Warning: Permanently added '18.234.179.224' (ED25519) to the list of known hosts. Running: /usr/bin/copr-rpmbuild --verbose --drop-resultdir --build-id 5742064 --chroot fedora-rawhide-x86_64 --detached Version: 0.64 PID: 24826 Logging PID: 24827 Task: {'appstream': True, 'background': True, 'build_id': 5742064, 'buildroot_pkgs': [], 'chroot': 'fedora-rawhide-x86_64', 'enable_net': False, 'fedora_review': False, 'git_hash': '60f44ac77f39b17c4322dcda1c18cb418cc52d74', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/thrnciar/Cython-3.0.0b2/bout++', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'bout++', 'package_version': '4.4.2-5.fc37', 'project_dirname': 'Cython-3.0.0b2', 'project_name': 'Cython-3.0.0b2', 'project_owner': 'thrnciar', 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/thrnciar/Cython-3.0.0b2/fedora-rawhide-x86_64/', 'id': 'copr_base', 'name': 'Copr repository'}], 'sandbox': 'thrnciar/Cython-3.0.0b2--thrnciar', 'source_json': {}, 'source_type': None, 'submitter': 'thrnciar', 'tags': [], 'task_id': '5742064-fedora-rawhide-x86_64', 'timeout': 18000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/thrnciar/Cython-3.0.0b2/bout++ /var/lib/copr-rpmbuild/workspace/workdir-d9blk9yn/bout++ --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/thrnciar/Cython-3.0.0b2/bout++', '/var/lib/copr-rpmbuild/workspace/workdir-d9blk9yn/bout++', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-d9blk9yn/bout++'... Running: git checkout 60f44ac77f39b17c4322dcda1c18cb418cc52d74 cmd: ['git', 'checkout', '60f44ac77f39b17c4322dcda1c18cb418cc52d74'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-d9blk9yn/bout++ rc: 0 stdout: stderr: Note: switching to '60f44ac77f39b17c4322dcda1c18cb418cc52d74'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 60f44ac automatic import of bout++ Running: copr-distgit-client sources /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated cmd: ['copr-distgit-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-d9blk9yn/bout++ rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading BOUT++-v4.4.2.tar.gz INFO: Calling: curl -H Pragma: -o BOUT++-v4.4.2.tar.gz --location --remote-time --show-error --fail https://copr-dist-git.fedorainfracloud.org/repo/pkgs/thrnciar/Cython-3.0.0b2/bout++/BOUT++-v4.4.2.tar.gz/md5/2fe29429c1201c3629fe7da8afac0afc/BOUT++-v4.4.2.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 18.6M 100 18.6M 0 0 123M 0 --:--:-- --:--:-- --:--:-- 123M INFO: Reading stdout from command: md5sum BOUT++-v4.4.2.tar.gz Running (timeout=18000): unbuffer mock --buildsrpm --spec /var/lib/copr-rpmbuild/workspace/workdir-d9blk9yn/bout++/bout++.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-d9blk9yn/bout++ --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1680615527.303785 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 3.5 starting (python version = 3.11.0, NVR = mock-3.5-1.fc37)... Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-d9blk9yn/bout++/bout++.spec) Config(fedora-rawhide-x86_64) Start: clean chroot Finish: clean chroot Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1680615527.303785/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 3.5 INFO: Mock Version: 3.5 Start(bootstrap): dnf install No matches found for the following disable plugin patterns: local, spacewalk, versionlock Updating Subscription Management repositories. Unable to read consumer identity This system is not registered with an entitlement server. You can use subscription-manager to register. Copr repository 33 kB/s | 8.5 kB 00:00 fedora 45 MB/s | 66 MB 00:01 Dependencies resolved. ================================================================================ Package Arch Version Repo Size ================================================================================ Installing: dnf noarch 4.14.0-2.fc38 fedora 478 k dnf-plugins-core noarch 4.3.1-2.fc38 fedora 33 k Installing dependencies: alternatives x86_64 1.22-1.fc39 fedora 38 k audit-libs x86_64 3.1-2.fc39 fedora 117 k basesystem noarch 11-15.fc38 fedora 7.0 k bash x86_64 5.2.15-3.fc38 fedora 1.8 M bzip2-libs x86_64 1.0.8-13.fc38 fedora 41 k ca-certificates noarch 2023.2.60-2.fc38 fedora 845 k coreutils x86_64 9.2-3.fc39 fedora 1.1 M coreutils-common x86_64 9.2-3.fc39 fedora 2.1 M crypto-policies noarch 20230301-1.gita12f7b2.fc39 fedora 93 k curl x86_64 8.0.1-2.fc39 fedora 350 k cyrus-sasl-lib x86_64 2.1.28-9.fc38 fedora 794 k dbus-libs x86_64 1:1.14.6-1.fc38 fedora 156 k dnf-data noarch 4.14.0-2.fc38 fedora 40 k elfutils-default-yama-scope noarch 0.189-1.fc39 fedora 15 k elfutils-libelf x86_64 0.189-1.fc39 fedora 196 k elfutils-libs x86_64 0.189-1.fc39 fedora 260 k expat x86_64 2.5.0-2.fc38 fedora 110 k fedora-gpg-keys noarch 39-0.1 fedora 126 k fedora-release noarch 39-0.8 fedora 12 k fedora-release-common noarch 39-0.8 fedora 22 k fedora-release-identity-basic noarch 39-0.8 fedora 13 k fedora-repos noarch 39-0.1 fedora 9.4 k fedora-repos-rawhide noarch 39-0.1 fedora 9.0 k file-libs x86_64 5.44-3.fc39 fedora 730 k filesystem x86_64 3.18-4.fc39 fedora 1.1 M findutils x86_64 1:4.9.0-3.fc38 fedora 492 k gawk x86_64 5.1.1-5.fc38 fedora 1.0 M gdbm-libs x86_64 1:1.23-3.fc38 fedora 56 k glib2 x86_64 2.76.1-1.fc39 fedora 2.8 M glibc x86_64 2.37.9000-5.fc39 fedora 2.1 M glibc-common x86_64 2.37.9000-5.fc39 fedora 323 k glibc-minimal-langpack x86_64 2.37.9000-5.fc39 fedora 45 k gmp x86_64 1:6.2.1-4.fc38 fedora 313 k gnupg2 x86_64 2.4.0-3.fc39 fedora 2.6 M gnutls x86_64 3.8.0-3.fc39 fedora 1.1 M gpgme x86_64 1.17.1-5.fc39 fedora 206 k grep x86_64 3.9-1.fc39 fedora 295 k ima-evm-utils x86_64 1.4-7.fc38 fedora 62 k json-c x86_64 0.16-4.fc38 fedora 41 k keyutils-libs x86_64 1.6.1-6.fc38 fedora 31 k krb5-libs x86_64 1.20.1-9.fc39 fedora 727 k libacl x86_64 2.3.1-7.fc39 fedora 23 k libarchive x86_64 3.6.1-5.fc39 fedora 400 k libassuan x86_64 2.5.5-6.fc38 fedora 67 k libattr x86_64 2.5.1-7.fc39 fedora 18 k libb2 x86_64 0.98.1-8.fc38 fedora 25 k libblkid x86_64 2.38.1-4.fc38 fedora 106 k libbrotli x86_64 1.0.9-11.fc38 fedora 317 k libcap x86_64 2.48-6.fc38 fedora 67 k libcap-ng x86_64 0.8.3-5.fc38 fedora 32 k libcom_err x86_64 1.46.5-4.fc38 fedora 26 k libcomps x86_64 0.1.19-1.fc39 fedora 77 k libcurl x86_64 8.0.1-2.fc39 fedora 313 k libdnf x86_64 0.70.0-1.fc39 fedora 662 k libeconf x86_64 0.4.0-5.fc38 fedora 27 k libevent x86_64 2.1.12-8.fc38 fedora 257 k libffi x86_64 3.4.4-2.fc38 fedora 38 k libfsverity x86_64 1.4-9.fc38 fedora 19 k libgcc x86_64 13.0.1-0.12.fc39 fedora 104 k libgcrypt x86_64 1.10.1-7.fc38 fedora 511 k libgomp x86_64 13.0.1-0.12.fc39 fedora 313 k libgpg-error x86_64 1.46-2.fc38 fedora 228 k libidn2 x86_64 2.3.4-2.fc38 fedora 160 k libksba x86_64 1.6.3-2.fc38 fedora 159 k libmodulemd x86_64 2.14.0-5.fc38 fedora 233 k libmount x86_64 2.38.1-4.fc38 fedora 135 k libnghttp2 x86_64 1.52.0-1.fc39 fedora 75 k libnsl2 x86_64 2.0.0-5.fc38 fedora 30 k libpsl x86_64 0.21.2-2.fc38 fedora 65 k librepo x86_64 1.15.1-2.fc38 fedora 96 k libreport-filesystem noarch 2.17.9-1.fc39 fedora 15 k libselinux x86_64 3.5-1.fc39 fedora 87 k libsemanage x86_64 3.5-2.fc39 fedora 120 k libsepol x86_64 3.5-1.fc39 fedora 324 k libsigsegv x86_64 2.14-4.fc38 fedora 27 k libsmartcols x86_64 2.38.1-4.fc38 fedora 64 k libsolv x86_64 0.7.22-4.fc38 fedora 412 k libssh x86_64 0.10.4-4.fc39 fedora 209 k libssh-config noarch 0.10.4-4.fc39 fedora 8.9 k libstdc++ x86_64 13.0.1-0.12.fc39 fedora 858 k libtasn1 x86_64 4.19.0-2.fc38 fedora 74 k libtirpc x86_64 1.3.3-1.fc38 fedora 94 k libunistring x86_64 1.1-3.fc38 fedora 545 k libunistring1.0 x86_64 1.0-1.fc38 fedora 539 k libuuid x86_64 2.38.1-4.fc38 fedora 28 k libverto x86_64 0.3.2-5.fc38 fedora 21 k libxcrypt x86_64 4.4.33-7.fc39 fedora 120 k libxml2 x86_64 2.10.3-3.fc38 fedora 700 k libyaml x86_64 0.2.5-9.fc38 fedora 59 k libzstd x86_64 1.5.4-1.fc39 fedora 302 k lua-libs x86_64 5.4.4-9.fc39 fedora 133 k lz4-libs x86_64 1.9.4-2.fc38 fedora 67 k mpdecimal x86_64 2.5.1-6.fc38 fedora 89 k mpfr x86_64 4.1.1-3.fc38 fedora 600 k ncurses-base noarch 6.4-3.20230114.fc38 fedora 87 k ncurses-libs x86_64 6.4-3.20230114.fc38 fedora 333 k nettle x86_64 3.8-3.fc38 fedora 412 k npth x86_64 1.6-12.fc38 fedora 24 k openldap x86_64 2.6.4-1.fc39 fedora 255 k openssl-libs x86_64 1:3.0.8-2.fc39 fedora 2.1 M p11-kit x86_64 0.24.1-6.fc38 fedora 359 k p11-kit-trust x86_64 0.24.1-6.fc38 fedora 136 k pcre2 x86_64 10.42-1.fc38.1 fedora 234 k pcre2-syntax noarch 10.42-1.fc38.1 fedora 144 k popt x86_64 1.19-2.fc38 fedora 67 k publicsuffix-list-dafsa noarch 20230318-1.fc39 fedora 60 k python-pip-wheel noarch 23.0.1-2.fc39 fedora 1.4 M python-setuptools-wheel noarch 65.5.1-2.fc38 fedora 715 k python3 x86_64 3.11.2-1.fc39 fedora 28 k python3-dateutil noarch 1:2.8.2-6.fc39 fedora 360 k python3-dbus x86_64 1.3.2-2.fc38 fedora 157 k python3-distro noarch 1.8.0-3.fc39 fedora 49 k python3-dnf noarch 4.14.0-2.fc38 fedora 604 k python3-dnf-plugins-core noarch 4.3.1-2.fc38 fedora 277 k python3-gpg x86_64 1.17.1-5.fc39 fedora 295 k python3-hawkey x86_64 0.70.0-1.fc39 fedora 106 k python3-libcomps x86_64 0.1.19-1.fc39 fedora 47 k python3-libdnf x86_64 0.70.0-1.fc39 fedora 822 k python3-libs x86_64 3.11.2-1.fc39 fedora 9.6 M python3-rpm x86_64 4.18.1-1.fc39 fedora 72 k python3-six noarch 1.16.0-9.fc38 fedora 42 k readline x86_64 8.2-3.fc38 fedora 212 k rpm x86_64 4.18.1-1.fc39 fedora 572 k rpm-build-libs x86_64 4.18.1-1.fc39 fedora 94 k rpm-libs x86_64 4.18.1-1.fc39 fedora 312 k rpm-sequoia x86_64 1.3.0-1.fc39 fedora 855 k rpm-sign-libs x86_64 4.18.1-1.fc39 fedora 26 k sed x86_64 4.8-12.fc38 fedora 306 k setup noarch 2.14.3-3.fc39 fedora 152 k shadow-utils x86_64 2:4.13-6.fc39 fedora 1.3 M sqlite-libs x86_64 3.41.2-1.fc39 fedora 669 k systemd-libs x86_64 253.2-1.fc39 fedora 662 k tpm2-tss x86_64 4.0.1-3.fc38 fedora 675 k tzdata noarch 2023c-1.fc39 fedora 718 k xz-libs x86_64 5.4.1-1.fc38 fedora 108 k zchunk-libs x86_64 1.3.0-1.fc39 fedora 51 k zlib x86_64 1.2.13-3.fc38 fedora 95 k Transaction Summary ================================================================================ Install 139 Packages Total download size: 58 M Installed size: 204 M Downloading Packages: (1/139): alternatives-1.22-1.fc39.x86_64.rpm 616 kB/s | 38 kB 00:00 (2/139): basesystem-11-15.fc38.noarch.rpm 111 kB/s | 7.0 kB 00:00 (3/139): audit-libs-3.1-2.fc39.x86_64.rpm 1.8 MB/s | 117 kB 00:00 (4/139): bzip2-libs-1.0.8-13.fc38.x86_64.rpm 5.6 MB/s | 41 kB 00:00 (5/139): bash-5.2.15-3.fc38.x86_64.rpm 134 MB/s | 1.8 MB 00:00 (6/139): ca-certificates-2023.2.60-2.fc38.noarc 65 MB/s | 845 kB 00:00 (7/139): coreutils-9.2-3.fc39.x86_64.rpm 109 MB/s | 1.1 MB 00:00 (8/139): crypto-policies-20230301-1.gita12f7b2. 12 MB/s | 93 kB 00:00 (9/139): coreutils-common-9.2-3.fc39.x86_64.rpm 174 MB/s | 2.1 MB 00:00 (10/139): curl-8.0.1-2.fc39.x86_64.rpm 45 MB/s | 350 kB 00:00 (11/139): cyrus-sasl-lib-2.1.28-9.fc38.x86_64.r 118 MB/s | 794 kB 00:00 (12/139): dbus-libs-1.14.6-1.fc38.x86_64.rpm 24 MB/s | 156 kB 00:00 (13/139): dnf-4.14.0-2.fc38.noarch.rpm 93 MB/s | 478 kB 00:00 (14/139): dnf-data-4.14.0-2.fc38.noarch.rpm 7.6 MB/s | 40 kB 00:00 (15/139): dnf-plugins-core-4.3.1-2.fc38.noarch. 7.3 MB/s | 33 kB 00:00 (16/139): elfutils-default-yama-scope-0.189-1.f 2.4 MB/s | 15 kB 00:00 (17/139): elfutils-libelf-0.189-1.fc39.x86_64.r 33 MB/s | 196 kB 00:00 (18/139): elfutils-libs-0.189-1.fc39.x86_64.rpm 49 MB/s | 260 kB 00:00 (19/139): expat-2.5.0-2.fc38.x86_64.rpm 24 MB/s | 110 kB 00:00 (20/139): fedora-gpg-keys-39-0.1.noarch.rpm 33 MB/s | 126 kB 00:00 (21/139): fedora-release-39-0.8.noarch.rpm 2.7 MB/s | 12 kB 00:00 (22/139): fedora-release-common-39-0.8.noarch.r 4.9 MB/s | 22 kB 00:00 (23/139): fedora-release-identity-basic-39-0.8. 2.8 MB/s | 13 kB 00:00 (24/139): fedora-repos-39-0.1.noarch.rpm 2.2 MB/s | 9.4 kB 00:00 (25/139): fedora-repos-rawhide-39-0.1.noarch.rp 2.7 MB/s | 9.0 kB 00:00 (26/139): file-libs-5.44-3.fc39.x86_64.rpm 96 MB/s | 730 kB 00:00 (27/139): filesystem-3.18-4.fc39.x86_64.rpm 139 MB/s | 1.1 MB 00:00 (28/139): findutils-4.9.0-3.fc38.x86_64.rpm 93 MB/s | 492 kB 00:00 (29/139): gdbm-libs-1.23-3.fc38.x86_64.rpm 10 MB/s | 56 kB 00:00 (30/139): gawk-5.1.1-5.fc38.x86_64.rpm 143 MB/s | 1.0 MB 00:00 (31/139): glib2-2.76.1-1.fc39.x86_64.rpm 138 MB/s | 2.8 MB 00:00 (32/139): glibc-2.37.9000-5.fc39.x86_64.rpm 108 MB/s | 2.1 MB 00:00 (33/139): glibc-common-2.37.9000-5.fc39.x86_64. 16 MB/s | 323 kB 00:00 (34/139): glibc-minimal-langpack-2.37.9000-5.fc 4.0 MB/s | 45 kB 00:00 (35/139): gmp-6.2.1-4.fc38.x86_64.rpm 21 MB/s | 313 kB 00:00 (36/139): gnupg2-2.4.0-3.fc39.x86_64.rpm 127 MB/s | 2.6 MB 00:00 (37/139): gpgme-1.17.1-5.fc39.x86_64.rpm 14 MB/s | 206 kB 00:00 (38/139): gnutls-3.8.0-3.fc39.x86_64.rpm 60 MB/s | 1.1 MB 00:00 (39/139): grep-3.9-1.fc39.x86_64.rpm 25 MB/s | 295 kB 00:00 (40/139): ima-evm-utils-1.4-7.fc38.x86_64.rpm 8.7 MB/s | 62 kB 00:00 (41/139): json-c-0.16-4.fc38.x86_64.rpm 7.3 MB/s | 41 kB 00:00 (42/139): keyutils-libs-1.6.1-6.fc38.x86_64.rpm 6.0 MB/s | 31 kB 00:00 (43/139): krb5-libs-1.20.1-9.fc39.x86_64.rpm 116 MB/s | 727 kB 00:00 (44/139): libacl-2.3.1-7.fc39.x86_64.rpm 4.0 MB/s | 23 kB 00:00 (45/139): libarchive-3.6.1-5.fc39.x86_64.rpm 56 MB/s | 400 kB 00:00 (46/139): libassuan-2.5.5-6.fc38.x86_64.rpm 5.1 MB/s | 67 kB 00:00 (47/139): libattr-2.5.1-7.fc39.x86_64.rpm 1.3 MB/s | 18 kB 00:00 (48/139): libb2-0.98.1-8.fc38.x86_64.rpm 1.9 MB/s | 25 kB 00:00 (49/139): libblkid-2.38.1-4.fc38.x86_64.rpm 27 MB/s | 106 kB 00:00 (50/139): libbrotli-1.0.9-11.fc38.x86_64.rpm 67 MB/s | 317 kB 00:00 (51/139): libcap-2.48-6.fc38.x86_64.rpm 14 MB/s | 67 kB 00:00 (52/139): libcap-ng-0.8.3-5.fc38.x86_64.rpm 23 MB/s | 32 kB 00:00 (53/139): libcom_err-1.46.5-4.fc38.x86_64.rpm 11 MB/s | 26 kB 00:00 (54/139): libcomps-0.1.19-1.fc39.x86_64.rpm 27 MB/s | 77 kB 00:00 (55/139): libcurl-8.0.1-2.fc39.x86_64.rpm 60 MB/s | 313 kB 00:00 (56/139): libdnf-0.70.0-1.fc39.x86_64.rpm 124 MB/s | 662 kB 00:00 (57/139): libeconf-0.4.0-5.fc38.x86_64.rpm 5.3 MB/s | 27 kB 00:00 (58/139): libevent-2.1.12-8.fc38.x86_64.rpm 110 MB/s | 257 kB 00:00 (59/139): libffi-3.4.4-2.fc38.x86_64.rpm 14 MB/s | 38 kB 00:00 (60/139): libfsverity-1.4-9.fc38.x86_64.rpm 7.3 MB/s | 19 kB 00:00 (61/139): libgcc-13.0.1-0.12.fc39.x86_64.rpm 43 MB/s | 104 kB 00:00 (62/139): libgcrypt-1.10.1-7.fc38.x86_64.rpm 125 MB/s | 511 kB 00:00 (63/139): libgomp-13.0.1-0.12.fc39.x86_64.rpm 67 MB/s | 313 kB 00:00 (64/139): libgpg-error-1.46-2.fc38.x86_64.rpm 46 MB/s | 228 kB 00:00 (65/139): libidn2-2.3.4-2.fc38.x86_64.rpm 62 MB/s | 160 kB 00:00 (66/139): libksba-1.6.3-2.fc38.x86_64.rpm 45 MB/s | 159 kB 00:00 (67/139): libmodulemd-2.14.0-5.fc38.x86_64.rpm 60 MB/s | 233 kB 00:00 (68/139): libmount-2.38.1-4.fc38.x86_64.rpm 45 MB/s | 135 kB 00:00 (69/139): libnghttp2-1.52.0-1.fc39.x86_64.rpm 30 MB/s | 75 kB 00:00 (70/139): libnsl2-2.0.0-5.fc38.x86_64.rpm 11 MB/s | 30 kB 00:00 (71/139): libpsl-0.21.2-2.fc38.x86_64.rpm 26 MB/s | 65 kB 00:00 (72/139): librepo-1.15.1-2.fc38.x86_64.rpm 33 MB/s | 96 kB 00:00 (73/139): libreport-filesystem-2.17.9-1.fc39.no 5.4 MB/s | 15 kB 00:00 (74/139): libselinux-3.5-1.fc39.x86_64.rpm 38 MB/s | 87 kB 00:00 (75/139): libsemanage-3.5-2.fc39.x86_64.rpm 49 MB/s | 120 kB 00:00 (76/139): libsepol-3.5-1.fc39.x86_64.rpm 101 MB/s | 324 kB 00:00 (77/139): libsigsegv-2.14-4.fc38.x86_64.rpm 5.0 MB/s | 27 kB 00:00 (78/139): libsmartcols-2.38.1-4.fc38.x86_64.rpm 12 MB/s | 64 kB 00:00 (79/139): libsolv-0.7.22-4.fc38.x86_64.rpm 68 MB/s | 412 kB 00:00 (80/139): libssh-0.10.4-4.fc39.x86_64.rpm 43 MB/s | 209 kB 00:00 (81/139): libssh-config-0.10.4-4.fc39.noarch.rp 2.7 MB/s | 8.9 kB 00:00 (82/139): libstdc++-13.0.1-0.12.fc39.x86_64.rpm 134 MB/s | 858 kB 00:00 (83/139): libtasn1-4.19.0-2.fc38.x86_64.rpm 15 MB/s | 74 kB 00:00 (84/139): libtirpc-1.3.3-1.fc38.x86_64.rpm 18 MB/s | 94 kB 00:00 (85/139): libunistring-1.1-3.fc38.x86_64.rpm 115 MB/s | 545 kB 00:00 (86/139): libunistring1.0-1.0-1.fc38.x86_64.rpm 99 MB/s | 539 kB 00:00 (87/139): libuuid-2.38.1-4.fc38.x86_64.rpm 5.3 MB/s | 28 kB 00:00 (88/139): libverto-0.3.2-5.fc38.x86_64.rpm 14 MB/s | 21 kB 00:00 (89/139): libxcrypt-4.4.33-7.fc39.x86_64.rpm 61 MB/s | 120 kB 00:00 (90/139): libxml2-2.10.3-3.fc38.x86_64.rpm 167 MB/s | 700 kB 00:00 (91/139): libyaml-0.2.5-9.fc38.x86_64.rpm 14 MB/s | 59 kB 00:00 (92/139): libzstd-1.5.4-1.fc39.x86_64.rpm 83 MB/s | 302 kB 00:00 (93/139): lua-libs-5.4.4-9.fc39.x86_64.rpm 44 MB/s | 133 kB 00:00 (94/139): lz4-libs-1.9.4-2.fc38.x86_64.rpm 16 MB/s | 67 kB 00:00 (95/139): mpdecimal-2.5.1-6.fc38.x86_64.rpm 19 MB/s | 89 kB 00:00 (96/139): mpfr-4.1.1-3.fc38.x86_64.rpm 95 MB/s | 600 kB 00:00 (97/139): ncurses-base-6.4-3.20230114.fc38.noar 17 MB/s | 87 kB 00:00 (98/139): ncurses-libs-6.4-3.20230114.fc38.x86_ 133 MB/s | 333 kB 00:00 (99/139): nettle-3.8-3.fc38.x86_64.rpm 109 MB/s | 412 kB 00:00 (100/139): npth-1.6-12.fc38.x86_64.rpm 5.9 MB/s | 24 kB 00:00 (101/139): openldap-2.6.4-1.fc39.x86_64.rpm 63 MB/s | 255 kB 00:00 (102/139): p11-kit-0.24.1-6.fc38.x86_64.rpm 58 MB/s | 359 kB 00:00 (103/139): openssl-libs-3.0.8-2.fc39.x86_64.rpm 236 MB/s | 2.1 MB 00:00 (104/139): p11-kit-trust-0.24.1-6.fc38.x86_64.r 14 MB/s | 136 kB 00:00 (105/139): pcre2-10.42-1.fc38.1.x86_64.rpm 53 MB/s | 234 kB 00:00 (106/139): pcre2-syntax-10.42-1.fc38.1.noarch.r 44 MB/s | 144 kB 00:00 (107/139): popt-1.19-2.fc38.x86_64.rpm 23 MB/s | 67 kB 00:00 (108/139): publicsuffix-list-dafsa-20230318-1.f 20 MB/s | 60 kB 00:00 (109/139): python-pip-wheel-23.0.1-2.fc39.noarc 209 MB/s | 1.4 MB 00:00 (110/139): python-setuptools-wheel-65.5.1-2.fc3 94 MB/s | 715 kB 00:00 (111/139): python3-3.11.2-1.fc39.x86_64.rpm 3.6 MB/s | 28 kB 00:00 (112/139): python3-dateutil-2.8.2-6.fc39.noarch 62 MB/s | 360 kB 00:00 (113/139): python3-dbus-1.3.2-2.fc38.x86_64.rpm 23 MB/s | 157 kB 00:00 (114/139): python3-distro-1.8.0-3.fc39.noarch.r 7.5 MB/s | 49 kB 00:00 (115/139): python3-dnf-4.14.0-2.fc38.noarch.rpm 69 MB/s | 604 kB 00:00 (116/139): python3-dnf-plugins-core-4.3.1-2.fc3 33 MB/s | 277 kB 00:00 (117/139): python3-gpg-1.17.1-5.fc39.x86_64.rpm 31 MB/s | 295 kB 00:00 (118/139): python3-hawkey-0.70.0-1.fc39.x86_64. 23 MB/s | 106 kB 00:00 (119/139): python3-libcomps-0.1.19-1.fc39.x86_6 9.2 MB/s | 47 kB 00:00 (120/139): python3-libdnf-0.70.0-1.fc39.x86_64. 114 MB/s | 822 kB 00:00 (121/139): python3-rpm-4.18.1-1.fc39.x86_64.rpm 9.6 MB/s | 72 kB 00:00 (122/139): python3-six-1.16.0-9.fc38.noarch.rpm 4.8 MB/s | 42 kB 00:00 (123/139): readline-8.2-3.fc38.x86_64.rpm 26 MB/s | 212 kB 00:00 (124/139): rpm-4.18.1-1.fc39.x86_64.rpm 74 MB/s | 572 kB 00:00 (125/139): rpm-build-libs-4.18.1-1.fc39.x86_64. 6.0 MB/s | 94 kB 00:00 (126/139): rpm-libs-4.18.1-1.fc39.x86_64.rpm 19 MB/s | 312 kB 00:00 (127/139): rpm-sequoia-1.3.0-1.fc39.x86_64.rpm 85 MB/s | 855 kB 00:00 (128/139): rpm-sign-libs-4.18.1-1.fc39.x86_64.r 3.0 MB/s | 26 kB 00:00 (129/139): python3-libs-3.11.2-1.fc39.x86_64.rp 163 MB/s | 9.6 MB 00:00 (130/139): sed-4.8-12.fc38.x86_64.rpm 20 MB/s | 306 kB 00:00 (131/139): setup-2.14.3-3.fc39.noarch.rpm 11 MB/s | 152 kB 00:00 (132/139): shadow-utils-4.13-6.fc39.x86_64.rpm 264 MB/s | 1.3 MB 00:00 (133/139): sqlite-libs-3.41.2-1.fc39.x86_64.rpm 93 MB/s | 669 kB 00:00 (134/139): systemd-libs-253.2-1.fc39.x86_64.rpm 78 MB/s | 662 kB 00:00 (135/139): tpm2-tss-4.0.1-3.fc38.x86_64.rpm 81 MB/s | 675 kB 00:00 (136/139): tzdata-2023c-1.fc39.noarch.rpm 85 MB/s | 718 kB 00:00 (137/139): xz-libs-5.4.1-1.fc38.x86_64.rpm 13 MB/s | 108 kB 00:00 (138/139): zchunk-libs-1.3.0-1.fc39.x86_64.rpm 8.0 MB/s | 51 kB 00:00 (139/139): zlib-1.2.13-3.fc38.x86_64.rpm 26 MB/s | 95 kB 00:00 -------------------------------------------------------------------------------- Total 105 MB/s | 58 MB 00:00 fedora 1.6 MB/s | 1.6 kB 00:00 Importing GPG key 0x18B8E74C: Userid : "Fedora (39) " Fingerprint: E8F2 3996 F232 1864 0CB4 4CBE 75CF 5AC4 18B8 E74C From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-39-primary Key imported successfully fedora 1.6 MB/s | 1.6 kB 00:00 GPG key at file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-39-primary (0x18B8E74C) is already installed fedora 1.6 MB/s | 1.6 kB 00:00 Importing GPG key 0xEB10B464: Userid : "Fedora (38) " Fingerprint: 6A51 BBAB BA3D 5467 B617 1221 809A 8D7C EB10 B464 From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-38-primary Key imported successfully Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Running scriptlet: filesystem-3.18-4.fc39.x86_64 1/1 Preparing : 1/1 Installing : libgcc-13.0.1-0.12.fc39.x86_64 1/139 Running scriptlet: libgcc-13.0.1-0.12.fc39.x86_64 1/139 Installing : tzdata-2023c-1.fc39.noarch 2/139 Installing : crypto-policies-20230301-1.gita12f7b2.fc39.noarc 3/139 Running scriptlet: crypto-policies-20230301-1.gita12f7b2.fc39.noarc 3/139 Installing : fedora-release-identity-basic-39-0.8.noarch 4/139 Installing : python-setuptools-wheel-65.5.1-2.fc38.noarch 5/139 Installing : publicsuffix-list-dafsa-20230318-1.fc39.noarch 6/139 Installing : pcre2-syntax-10.42-1.fc38.1.noarch 7/139 Installing : ncurses-base-6.4-3.20230114.fc38.noarch 8/139 Installing : libssh-config-0.10.4-4.fc39.noarch 9/139 Installing : libreport-filesystem-2.17.9-1.fc39.noarch 10/139 Installing : dnf-data-4.14.0-2.fc38.noarch 11/139 warning: /etc/dnf/dnf.conf created as /etc/dnf/dnf.conf.rpmnew Installing : fedora-gpg-keys-39-0.1.noarch 12/139 Installing : fedora-release-39-0.8.noarch 13/139 Installing : fedora-release-common-39-0.8.noarch 14/139 Installing : fedora-repos-rawhide-39-0.1.noarch 15/139 Installing : fedora-repos-39-0.1.noarch 16/139 Installing : setup-2.14.3-3.fc39.noarch 17/139 Running scriptlet: setup-2.14.3-3.fc39.noarch 17/139 Installing : filesystem-3.18-4.fc39.x86_64 18/139 Installing : basesystem-11-15.fc38.noarch 19/139 Installing : glibc-minimal-langpack-2.37.9000-5.fc39.x86_64 20/139 Installing : glibc-common-2.37.9000-5.fc39.x86_64 21/139 Running scriptlet: glibc-2.37.9000-5.fc39.x86_64 22/139 Installing : glibc-2.37.9000-5.fc39.x86_64 22/139 Running scriptlet: glibc-2.37.9000-5.fc39.x86_64 22/139 Installing : ncurses-libs-6.4-3.20230114.fc38.x86_64 23/139 Installing : bash-5.2.15-3.fc38.x86_64 24/139 Running scriptlet: bash-5.2.15-3.fc38.x86_64 24/139 Installing : zlib-1.2.13-3.fc38.x86_64 25/139 Installing : bzip2-libs-1.0.8-13.fc38.x86_64 26/139 Installing : libzstd-1.5.4-1.fc39.x86_64 27/139 Installing : xz-libs-5.4.1-1.fc38.x86_64 28/139 Installing : sqlite-libs-3.41.2-1.fc39.x86_64 29/139 Installing : libcap-2.48-6.fc38.x86_64 30/139 Installing : gmp-1:6.2.1-4.fc38.x86_64 31/139 Installing : libgpg-error-1.46-2.fc38.x86_64 32/139 Installing : popt-1.19-2.fc38.x86_64 33/139 Installing : libxml2-2.10.3-3.fc38.x86_64 34/139 Installing : libuuid-2.38.1-4.fc38.x86_64 35/139 Installing : lua-libs-5.4.4-9.fc39.x86_64 36/139 Installing : elfutils-libelf-0.189-1.fc39.x86_64 37/139 Installing : file-libs-5.44-3.fc39.x86_64 38/139 Installing : readline-8.2-3.fc38.x86_64 39/139 Installing : libattr-2.5.1-7.fc39.x86_64 40/139 Installing : libacl-2.3.1-7.fc39.x86_64 41/139 Installing : libffi-3.4.4-2.fc38.x86_64 42/139 Installing : p11-kit-0.24.1-6.fc38.x86_64 43/139 Installing : libstdc++-13.0.1-0.12.fc39.x86_64 44/139 Installing : libxcrypt-4.4.33-7.fc39.x86_64 45/139 Installing : pcre2-10.42-1.fc38.1.x86_64 46/139 Installing : libassuan-2.5.5-6.fc38.x86_64 47/139 Installing : expat-2.5.0-2.fc38.x86_64 48/139 Installing : gdbm-libs-1:1.23-3.fc38.x86_64 49/139 Installing : json-c-0.16-4.fc38.x86_64 50/139 Installing : keyutils-libs-1.6.1-6.fc38.x86_64 51/139 Installing : libcom_err-1.46.5-4.fc38.x86_64 52/139 Installing : libgomp-13.0.1-0.12.fc39.x86_64 53/139 Installing : libsepol-3.5-1.fc39.x86_64 54/139 Installing : libselinux-3.5-1.fc39.x86_64 55/139 Installing : sed-4.8-12.fc38.x86_64 56/139 Installing : libsmartcols-2.38.1-4.fc38.x86_64 57/139 Installing : libtasn1-4.19.0-2.fc38.x86_64 58/139 Installing : libunistring1.0-1.0-1.fc38.x86_64 59/139 Installing : libidn2-2.3.4-2.fc38.x86_64 60/139 Installing : lz4-libs-1.9.4-2.fc38.x86_64 61/139 Installing : systemd-libs-253.2-1.fc39.x86_64 62/139 Installing : dbus-libs-1:1.14.6-1.fc38.x86_64 63/139 Installing : libpsl-0.21.2-2.fc38.x86_64 64/139 Installing : findutils-1:4.9.0-3.fc38.x86_64 65/139 Installing : libb2-0.98.1-8.fc38.x86_64 66/139 Installing : cyrus-sasl-lib-2.1.28-9.fc38.x86_64 67/139 Installing : libcomps-0.1.19-1.fc39.x86_64 68/139 Installing : grep-3.9-1.fc39.x86_64 69/139 Installing : libblkid-2.38.1-4.fc38.x86_64 70/139 Installing : libmount-2.38.1-4.fc38.x86_64 71/139 Installing : libgcrypt-1.10.1-7.fc38.x86_64 72/139 Installing : libksba-1.6.3-2.fc38.x86_64 73/139 Installing : mpfr-4.1.1-3.fc38.x86_64 74/139 Installing : nettle-3.8-3.fc38.x86_64 75/139 Installing : elfutils-default-yama-scope-0.189-1.fc39.noarch 76/139 Running scriptlet: elfutils-default-yama-scope-0.189-1.fc39.noarch 76/139 Installing : elfutils-libs-0.189-1.fc39.x86_64 77/139 Installing : alternatives-1.22-1.fc39.x86_64 78/139 Installing : p11-kit-trust-0.24.1-6.fc38.x86_64 79/139 Running scriptlet: p11-kit-trust-0.24.1-6.fc38.x86_64 79/139 Installing : libbrotli-1.0.9-11.fc38.x86_64 80/139 Installing : libcap-ng-0.8.3-5.fc38.x86_64 81/139 Installing : audit-libs-3.1-2.fc39.x86_64 82/139 Installing : libsemanage-3.5-2.fc39.x86_64 83/139 Installing : libeconf-0.4.0-5.fc38.x86_64 84/139 Installing : shadow-utils-2:4.13-6.fc39.x86_64 85/139 Installing : libnghttp2-1.52.0-1.fc39.x86_64 86/139 Installing : libsigsegv-2.14-4.fc38.x86_64 87/139 Installing : gawk-5.1.1-5.fc38.x86_64 88/139 Installing : libunistring-1.1-3.fc38.x86_64 89/139 Installing : gnutls-3.8.0-3.fc39.x86_64 90/139 Installing : glib2-2.76.1-1.fc39.x86_64 91/139 Installing : libverto-0.3.2-5.fc38.x86_64 92/139 Installing : libyaml-0.2.5-9.fc38.x86_64 93/139 Installing : mpdecimal-2.5.1-6.fc38.x86_64 94/139 Installing : npth-1.6-12.fc38.x86_64 95/139 Installing : coreutils-common-9.2-3.fc39.x86_64 96/139 Installing : openssl-libs-1:3.0.8-2.fc39.x86_64 97/139 Installing : coreutils-9.2-3.fc39.x86_64 98/139 Running scriptlet: ca-certificates-2023.2.60-2.fc38.noarch 99/139 Installing : ca-certificates-2023.2.60-2.fc38.noarch 99/139 Running scriptlet: ca-certificates-2023.2.60-2.fc38.noarch 99/139 Installing : rpm-sequoia-1.3.0-1.fc39.x86_64 100/139 Installing : rpm-libs-4.18.1-1.fc39.x86_64 101/139 Installing : krb5-libs-1.20.1-9.fc39.x86_64 102/139 Installing : libtirpc-1.3.3-1.fc38.x86_64 103/139 Installing : libmodulemd-2.14.0-5.fc38.x86_64 104/139 Installing : libfsverity-1.4-9.fc38.x86_64 105/139 Installing : zchunk-libs-1.3.0-1.fc39.x86_64 106/139 Installing : libsolv-0.7.22-4.fc38.x86_64 107/139 Installing : libnsl2-2.0.0-5.fc38.x86_64 108/139 Installing : libssh-0.10.4-4.fc39.x86_64 109/139 Installing : rpm-build-libs-4.18.1-1.fc39.x86_64 110/139 Installing : python-pip-wheel-23.0.1-2.fc39.noarch 111/139 Installing : python3-3.11.2-1.fc39.x86_64 112/139 Installing : python3-libs-3.11.2-1.fc39.x86_64 113/139 Installing : python3-dbus-1.3.2-2.fc38.x86_64 114/139 Installing : python3-libcomps-0.1.19-1.fc39.x86_64 115/139 Installing : python3-distro-1.8.0-3.fc39.noarch 116/139 Installing : python3-six-1.16.0-9.fc38.noarch 117/139 Installing : python3-dateutil-1:2.8.2-6.fc39.noarch 118/139 Installing : libarchive-3.6.1-5.fc39.x86_64 119/139 Installing : libevent-2.1.12-8.fc38.x86_64 120/139 Installing : openldap-2.6.4-1.fc39.x86_64 121/139 Installing : libcurl-8.0.1-2.fc39.x86_64 122/139 Installing : gnupg2-2.4.0-3.fc39.x86_64 123/139 Installing : gpgme-1.17.1-5.fc39.x86_64 124/139 Installing : librepo-1.15.1-2.fc38.x86_64 125/139 Installing : libdnf-0.70.0-1.fc39.x86_64 126/139 Installing : python3-libdnf-0.70.0-1.fc39.x86_64 127/139 Installing : python3-hawkey-0.70.0-1.fc39.x86_64 128/139 Installing : python3-gpg-1.17.1-5.fc39.x86_64 129/139 Installing : curl-8.0.1-2.fc39.x86_64 130/139 Running scriptlet: tpm2-tss-4.0.1-3.fc38.x86_64 131/139 useradd: Warning: missing or non-executable shell '/usr/sbin/nologin' Installing : tpm2-tss-4.0.1-3.fc38.x86_64 131/139 Installing : ima-evm-utils-1.4-7.fc38.x86_64 132/139 Installing : rpm-sign-libs-4.18.1-1.fc39.x86_64 133/139 Installing : python3-rpm-4.18.1-1.fc39.x86_64 134/139 Installing : python3-dnf-4.14.0-2.fc38.noarch 135/139 Installing : python3-dnf-plugins-core-4.3.1-2.fc38.noarch 136/139 Installing : dnf-plugins-core-4.3.1-2.fc38.noarch 137/139 Installing : dnf-4.14.0-2.fc38.noarch 138/139 Running scriptlet: dnf-4.14.0-2.fc38.noarch 138/139 Running scriptlet: rpm-4.18.1-1.fc39.x86_64 139/139 Installing : rpm-4.18.1-1.fc39.x86_64 139/139 Running scriptlet: filesystem-3.18-4.fc39.x86_64 139/139 Running scriptlet: ca-certificates-2023.2.60-2.fc38.noarch 139/139 Running scriptlet: rpm-4.18.1-1.fc39.x86_64 139/139 Verifying : alternatives-1.22-1.fc39.x86_64 1/139 Verifying : audit-libs-3.1-2.fc39.x86_64 2/139 Verifying : basesystem-11-15.fc38.noarch 3/139 Verifying : bash-5.2.15-3.fc38.x86_64 4/139 Verifying : bzip2-libs-1.0.8-13.fc38.x86_64 5/139 Verifying : ca-certificates-2023.2.60-2.fc38.noarch 6/139 Verifying : coreutils-9.2-3.fc39.x86_64 7/139 Verifying : coreutils-common-9.2-3.fc39.x86_64 8/139 Verifying : crypto-policies-20230301-1.gita12f7b2.fc39.noarc 9/139 Verifying : curl-8.0.1-2.fc39.x86_64 10/139 Verifying : cyrus-sasl-lib-2.1.28-9.fc38.x86_64 11/139 Verifying : dbus-libs-1:1.14.6-1.fc38.x86_64 12/139 Verifying : dnf-4.14.0-2.fc38.noarch 13/139 Verifying : dnf-data-4.14.0-2.fc38.noarch 14/139 Verifying : dnf-plugins-core-4.3.1-2.fc38.noarch 15/139 Verifying : elfutils-default-yama-scope-0.189-1.fc39.noarch 16/139 Verifying : elfutils-libelf-0.189-1.fc39.x86_64 17/139 Verifying : elfutils-libs-0.189-1.fc39.x86_64 18/139 Verifying : expat-2.5.0-2.fc38.x86_64 19/139 Verifying : fedora-gpg-keys-39-0.1.noarch 20/139 Verifying : fedora-release-39-0.8.noarch 21/139 Verifying : fedora-release-common-39-0.8.noarch 22/139 Verifying : fedora-release-identity-basic-39-0.8.noarch 23/139 Verifying : fedora-repos-39-0.1.noarch 24/139 Verifying : fedora-repos-rawhide-39-0.1.noarch 25/139 Verifying : file-libs-5.44-3.fc39.x86_64 26/139 Verifying : filesystem-3.18-4.fc39.x86_64 27/139 Verifying : findutils-1:4.9.0-3.fc38.x86_64 28/139 Verifying : gawk-5.1.1-5.fc38.x86_64 29/139 Verifying : gdbm-libs-1:1.23-3.fc38.x86_64 30/139 Verifying : glib2-2.76.1-1.fc39.x86_64 31/139 Verifying : glibc-2.37.9000-5.fc39.x86_64 32/139 Verifying : glibc-common-2.37.9000-5.fc39.x86_64 33/139 Verifying : glibc-minimal-langpack-2.37.9000-5.fc39.x86_64 34/139 Verifying : gmp-1:6.2.1-4.fc38.x86_64 35/139 Verifying : gnupg2-2.4.0-3.fc39.x86_64 36/139 Verifying : gnutls-3.8.0-3.fc39.x86_64 37/139 Verifying : gpgme-1.17.1-5.fc39.x86_64 38/139 Verifying : grep-3.9-1.fc39.x86_64 39/139 Verifying : ima-evm-utils-1.4-7.fc38.x86_64 40/139 Verifying : json-c-0.16-4.fc38.x86_64 41/139 Verifying : keyutils-libs-1.6.1-6.fc38.x86_64 42/139 Verifying : krb5-libs-1.20.1-9.fc39.x86_64 43/139 Verifying : libacl-2.3.1-7.fc39.x86_64 44/139 Verifying : libarchive-3.6.1-5.fc39.x86_64 45/139 Verifying : libassuan-2.5.5-6.fc38.x86_64 46/139 Verifying : libattr-2.5.1-7.fc39.x86_64 47/139 Verifying : libb2-0.98.1-8.fc38.x86_64 48/139 Verifying : libblkid-2.38.1-4.fc38.x86_64 49/139 Verifying : libbrotli-1.0.9-11.fc38.x86_64 50/139 Verifying : libcap-2.48-6.fc38.x86_64 51/139 Verifying : libcap-ng-0.8.3-5.fc38.x86_64 52/139 Verifying : libcom_err-1.46.5-4.fc38.x86_64 53/139 Verifying : libcomps-0.1.19-1.fc39.x86_64 54/139 Verifying : libcurl-8.0.1-2.fc39.x86_64 55/139 Verifying : libdnf-0.70.0-1.fc39.x86_64 56/139 Verifying : libeconf-0.4.0-5.fc38.x86_64 57/139 Verifying : libevent-2.1.12-8.fc38.x86_64 58/139 Verifying : libffi-3.4.4-2.fc38.x86_64 59/139 Verifying : libfsverity-1.4-9.fc38.x86_64 60/139 Verifying : libgcc-13.0.1-0.12.fc39.x86_64 61/139 Verifying : libgcrypt-1.10.1-7.fc38.x86_64 62/139 Verifying : libgomp-13.0.1-0.12.fc39.x86_64 63/139 Verifying : libgpg-error-1.46-2.fc38.x86_64 64/139 Verifying : libidn2-2.3.4-2.fc38.x86_64 65/139 Verifying : libksba-1.6.3-2.fc38.x86_64 66/139 Verifying : libmodulemd-2.14.0-5.fc38.x86_64 67/139 Verifying : libmount-2.38.1-4.fc38.x86_64 68/139 Verifying : libnghttp2-1.52.0-1.fc39.x86_64 69/139 Verifying : libnsl2-2.0.0-5.fc38.x86_64 70/139 Verifying : libpsl-0.21.2-2.fc38.x86_64 71/139 Verifying : librepo-1.15.1-2.fc38.x86_64 72/139 Verifying : libreport-filesystem-2.17.9-1.fc39.noarch 73/139 Verifying : libselinux-3.5-1.fc39.x86_64 74/139 Verifying : libsemanage-3.5-2.fc39.x86_64 75/139 Verifying : libsepol-3.5-1.fc39.x86_64 76/139 Verifying : libsigsegv-2.14-4.fc38.x86_64 77/139 Verifying : libsmartcols-2.38.1-4.fc38.x86_64 78/139 Verifying : libsolv-0.7.22-4.fc38.x86_64 79/139 Verifying : libssh-0.10.4-4.fc39.x86_64 80/139 Verifying : libssh-config-0.10.4-4.fc39.noarch 81/139 Verifying : libstdc++-13.0.1-0.12.fc39.x86_64 82/139 Verifying : libtasn1-4.19.0-2.fc38.x86_64 83/139 Verifying : libtirpc-1.3.3-1.fc38.x86_64 84/139 Verifying : libunistring-1.1-3.fc38.x86_64 85/139 Verifying : libunistring1.0-1.0-1.fc38.x86_64 86/139 Verifying : libuuid-2.38.1-4.fc38.x86_64 87/139 Verifying : libverto-0.3.2-5.fc38.x86_64 88/139 Verifying : libxcrypt-4.4.33-7.fc39.x86_64 89/139 Verifying : libxml2-2.10.3-3.fc38.x86_64 90/139 Verifying : libyaml-0.2.5-9.fc38.x86_64 91/139 Verifying : libzstd-1.5.4-1.fc39.x86_64 92/139 Verifying : lua-libs-5.4.4-9.fc39.x86_64 93/139 Verifying : lz4-libs-1.9.4-2.fc38.x86_64 94/139 Verifying : mpdecimal-2.5.1-6.fc38.x86_64 95/139 Verifying : mpfr-4.1.1-3.fc38.x86_64 96/139 Verifying : ncurses-base-6.4-3.20230114.fc38.noarch 97/139 Verifying : ncurses-libs-6.4-3.20230114.fc38.x86_64 98/139 Verifying : nettle-3.8-3.fc38.x86_64 99/139 Verifying : npth-1.6-12.fc38.x86_64 100/139 Verifying : openldap-2.6.4-1.fc39.x86_64 101/139 Verifying : openssl-libs-1:3.0.8-2.fc39.x86_64 102/139 Verifying : p11-kit-0.24.1-6.fc38.x86_64 103/139 Verifying : p11-kit-trust-0.24.1-6.fc38.x86_64 104/139 Verifying : pcre2-10.42-1.fc38.1.x86_64 105/139 Verifying : pcre2-syntax-10.42-1.fc38.1.noarch 106/139 Verifying : popt-1.19-2.fc38.x86_64 107/139 Verifying : publicsuffix-list-dafsa-20230318-1.fc39.noarch 108/139 Verifying : python-pip-wheel-23.0.1-2.fc39.noarch 109/139 Verifying : python-setuptools-wheel-65.5.1-2.fc38.noarch 110/139 Verifying : python3-3.11.2-1.fc39.x86_64 111/139 Verifying : python3-dateutil-1:2.8.2-6.fc39.noarch 112/139 Verifying : python3-dbus-1.3.2-2.fc38.x86_64 113/139 Verifying : python3-distro-1.8.0-3.fc39.noarch 114/139 Verifying : python3-dnf-4.14.0-2.fc38.noarch 115/139 Verifying : python3-dnf-plugins-core-4.3.1-2.fc38.noarch 116/139 Verifying : python3-gpg-1.17.1-5.fc39.x86_64 117/139 Verifying : python3-hawkey-0.70.0-1.fc39.x86_64 118/139 Verifying : python3-libcomps-0.1.19-1.fc39.x86_64 119/139 Verifying : python3-libdnf-0.70.0-1.fc39.x86_64 120/139 Verifying : python3-libs-3.11.2-1.fc39.x86_64 121/139 Verifying : python3-rpm-4.18.1-1.fc39.x86_64 122/139 Verifying : python3-six-1.16.0-9.fc38.noarch 123/139 Verifying : readline-8.2-3.fc38.x86_64 124/139 Verifying : rpm-4.18.1-1.fc39.x86_64 125/139 Verifying : rpm-build-libs-4.18.1-1.fc39.x86_64 126/139 Verifying : rpm-libs-4.18.1-1.fc39.x86_64 127/139 Verifying : rpm-sequoia-1.3.0-1.fc39.x86_64 128/139 Verifying : rpm-sign-libs-4.18.1-1.fc39.x86_64 129/139 Verifying : sed-4.8-12.fc38.x86_64 130/139 Verifying : setup-2.14.3-3.fc39.noarch 131/139 Verifying : shadow-utils-2:4.13-6.fc39.x86_64 132/139 Verifying : sqlite-libs-3.41.2-1.fc39.x86_64 133/139 Verifying : systemd-libs-253.2-1.fc39.x86_64 134/139 Verifying : tpm2-tss-4.0.1-3.fc38.x86_64 135/139 Verifying : tzdata-2023c-1.fc39.noarch 136/139 Verifying : xz-libs-5.4.1-1.fc38.x86_64 137/139 Verifying : zchunk-libs-1.3.0-1.fc39.x86_64 138/139 Verifying : zlib-1.2.13-3.fc38.x86_64 139/139 Installed products updated. Installed: alternatives-1.22-1.fc39.x86_64 audit-libs-3.1-2.fc39.x86_64 basesystem-11-15.fc38.noarch bash-5.2.15-3.fc38.x86_64 bzip2-libs-1.0.8-13.fc38.x86_64 ca-certificates-2023.2.60-2.fc38.noarch coreutils-9.2-3.fc39.x86_64 coreutils-common-9.2-3.fc39.x86_64 crypto-policies-20230301-1.gita12f7b2.fc39.noarch curl-8.0.1-2.fc39.x86_64 cyrus-sasl-lib-2.1.28-9.fc38.x86_64 dbus-libs-1:1.14.6-1.fc38.x86_64 dnf-4.14.0-2.fc38.noarch dnf-data-4.14.0-2.fc38.noarch dnf-plugins-core-4.3.1-2.fc38.noarch elfutils-default-yama-scope-0.189-1.fc39.noarch elfutils-libelf-0.189-1.fc39.x86_64 elfutils-libs-0.189-1.fc39.x86_64 expat-2.5.0-2.fc38.x86_64 fedora-gpg-keys-39-0.1.noarch fedora-release-39-0.8.noarch fedora-release-common-39-0.8.noarch fedora-release-identity-basic-39-0.8.noarch fedora-repos-39-0.1.noarch fedora-repos-rawhide-39-0.1.noarch file-libs-5.44-3.fc39.x86_64 filesystem-3.18-4.fc39.x86_64 findutils-1:4.9.0-3.fc38.x86_64 gawk-5.1.1-5.fc38.x86_64 gdbm-libs-1:1.23-3.fc38.x86_64 glib2-2.76.1-1.fc39.x86_64 glibc-2.37.9000-5.fc39.x86_64 glibc-common-2.37.9000-5.fc39.x86_64 glibc-minimal-langpack-2.37.9000-5.fc39.x86_64 gmp-1:6.2.1-4.fc38.x86_64 gnupg2-2.4.0-3.fc39.x86_64 gnutls-3.8.0-3.fc39.x86_64 gpgme-1.17.1-5.fc39.x86_64 grep-3.9-1.fc39.x86_64 ima-evm-utils-1.4-7.fc38.x86_64 json-c-0.16-4.fc38.x86_64 keyutils-libs-1.6.1-6.fc38.x86_64 krb5-libs-1.20.1-9.fc39.x86_64 libacl-2.3.1-7.fc39.x86_64 libarchive-3.6.1-5.fc39.x86_64 libassuan-2.5.5-6.fc38.x86_64 libattr-2.5.1-7.fc39.x86_64 libb2-0.98.1-8.fc38.x86_64 libblkid-2.38.1-4.fc38.x86_64 libbrotli-1.0.9-11.fc38.x86_64 libcap-2.48-6.fc38.x86_64 libcap-ng-0.8.3-5.fc38.x86_64 libcom_err-1.46.5-4.fc38.x86_64 libcomps-0.1.19-1.fc39.x86_64 libcurl-8.0.1-2.fc39.x86_64 libdnf-0.70.0-1.fc39.x86_64 libeconf-0.4.0-5.fc38.x86_64 libevent-2.1.12-8.fc38.x86_64 libffi-3.4.4-2.fc38.x86_64 libfsverity-1.4-9.fc38.x86_64 libgcc-13.0.1-0.12.fc39.x86_64 libgcrypt-1.10.1-7.fc38.x86_64 libgomp-13.0.1-0.12.fc39.x86_64 libgpg-error-1.46-2.fc38.x86_64 libidn2-2.3.4-2.fc38.x86_64 libksba-1.6.3-2.fc38.x86_64 libmodulemd-2.14.0-5.fc38.x86_64 libmount-2.38.1-4.fc38.x86_64 libnghttp2-1.52.0-1.fc39.x86_64 libnsl2-2.0.0-5.fc38.x86_64 libpsl-0.21.2-2.fc38.x86_64 librepo-1.15.1-2.fc38.x86_64 libreport-filesystem-2.17.9-1.fc39.noarch libselinux-3.5-1.fc39.x86_64 libsemanage-3.5-2.fc39.x86_64 libsepol-3.5-1.fc39.x86_64 libsigsegv-2.14-4.fc38.x86_64 libsmartcols-2.38.1-4.fc38.x86_64 libsolv-0.7.22-4.fc38.x86_64 libssh-0.10.4-4.fc39.x86_64 libssh-config-0.10.4-4.fc39.noarch libstdc++-13.0.1-0.12.fc39.x86_64 libtasn1-4.19.0-2.fc38.x86_64 libtirpc-1.3.3-1.fc38.x86_64 libunistring-1.1-3.fc38.x86_64 libunistring1.0-1.0-1.fc38.x86_64 libuuid-2.38.1-4.fc38.x86_64 libverto-0.3.2-5.fc38.x86_64 libxcrypt-4.4.33-7.fc39.x86_64 libxml2-2.10.3-3.fc38.x86_64 libyaml-0.2.5-9.fc38.x86_64 libzstd-1.5.4-1.fc39.x86_64 lua-libs-5.4.4-9.fc39.x86_64 lz4-libs-1.9.4-2.fc38.x86_64 mpdecimal-2.5.1-6.fc38.x86_64 mpfr-4.1.1-3.fc38.x86_64 ncurses-base-6.4-3.20230114.fc38.noarch ncurses-libs-6.4-3.20230114.fc38.x86_64 nettle-3.8-3.fc38.x86_64 npth-1.6-12.fc38.x86_64 openldap-2.6.4-1.fc39.x86_64 openssl-libs-1:3.0.8-2.fc39.x86_64 p11-kit-0.24.1-6.fc38.x86_64 p11-kit-trust-0.24.1-6.fc38.x86_64 pcre2-10.42-1.fc38.1.x86_64 pcre2-syntax-10.42-1.fc38.1.noarch popt-1.19-2.fc38.x86_64 publicsuffix-list-dafsa-20230318-1.fc39.noarch python-pip-wheel-23.0.1-2.fc39.noarch python-setuptools-wheel-65.5.1-2.fc38.noarch python3-3.11.2-1.fc39.x86_64 python3-dateutil-1:2.8.2-6.fc39.noarch python3-dbus-1.3.2-2.fc38.x86_64 python3-distro-1.8.0-3.fc39.noarch python3-dnf-4.14.0-2.fc38.noarch python3-dnf-plugins-core-4.3.1-2.fc38.noarch python3-gpg-1.17.1-5.fc39.x86_64 python3-hawkey-0.70.0-1.fc39.x86_64 python3-libcomps-0.1.19-1.fc39.x86_64 python3-libdnf-0.70.0-1.fc39.x86_64 python3-libs-3.11.2-1.fc39.x86_64 python3-rpm-4.18.1-1.fc39.x86_64 python3-six-1.16.0-9.fc38.noarch readline-8.2-3.fc38.x86_64 rpm-4.18.1-1.fc39.x86_64 rpm-build-libs-4.18.1-1.fc39.x86_64 rpm-libs-4.18.1-1.fc39.x86_64 rpm-sequoia-1.3.0-1.fc39.x86_64 rpm-sign-libs-4.18.1-1.fc39.x86_64 sed-4.8-12.fc38.x86_64 setup-2.14.3-3.fc39.noarch shadow-utils-2:4.13-6.fc39.x86_64 sqlite-libs-3.41.2-1.fc39.x86_64 systemd-libs-253.2-1.fc39.x86_64 tpm2-tss-4.0.1-3.fc38.x86_64 tzdata-2023c-1.fc39.noarch xz-libs-5.4.1-1.fc38.x86_64 zchunk-libs-1.3.0-1.fc39.x86_64 zlib-1.2.13-3.fc38.x86_64 Complete! Finish(bootstrap): dnf install Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1680615527.303785/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 3.5 INFO: Mock Version: 3.5 Start: dnf install No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 112 kB/s | 3.3 kB 00:00 fedora 160 kB/s | 8.4 kB 00:00 Dependencies resolved. ================================================================================ Package Arch Version Repo Size ================================================================================ Installing group/module packages: bash x86_64 5.2.15-3.fc38 fedora 1.8 M bzip2 x86_64 1.0.8-13.fc38 fedora 52 k coreutils x86_64 9.2-3.fc39 fedora 1.1 M cpio x86_64 2.13-14.fc38 fedora 276 k diffutils x86_64 3.9-4.fc39 fedora 397 k fedora-release-common noarch 39-0.8 fedora 22 k findutils x86_64 1:4.9.0-3.fc38 fedora 492 k gawk x86_64 5.1.1-5.fc38 fedora 1.0 M glibc-minimal-langpack x86_64 2.37.9000-5.fc39 fedora 45 k grep x86_64 3.9-1.fc39 fedora 295 k gzip x86_64 1.12-3.fc38 fedora 166 k info x86_64 7.0.3-1.fc39 fedora 184 k patch x86_64 2.7.6-21.fc39 fedora 126 k redhat-rpm-config noarch 254-1.fc39 fedora 83 k rpm-build x86_64 4.18.1-1.fc39 fedora 76 k sed x86_64 4.8-12.fc38 fedora 306 k shadow-utils x86_64 2:4.13-6.fc39 fedora 1.3 M tar x86_64 2:1.34-8.fc39 fedora 888 k unzip x86_64 6.0-60.fc38 fedora 184 k util-linux x86_64 2.38.1-4.fc38 fedora 2.3 M which x86_64 2.21-39.fc39 fedora 42 k xz x86_64 5.4.1-1.fc38 fedora 419 k Installing dependencies: alternatives x86_64 1.22-1.fc39 fedora 38 k ansible-srpm-macros noarch 1-9.1.fc38 fedora 8.8 k audit-libs x86_64 3.1-2.fc39 fedora 117 k authselect x86_64 1.4.2-2.fc38 fedora 144 k authselect-libs x86_64 1.4.2-2.fc38 fedora 249 k basesystem noarch 11-15.fc38 fedora 7.0 k binutils x86_64 2.40-5.fc39 fedora 5.6 M binutils-gold x86_64 2.40-5.fc39 fedora 780 k bzip2-libs x86_64 1.0.8-13.fc38 fedora 41 k ca-certificates noarch 2023.2.60-2.fc38 fedora 845 k coreutils-common x86_64 9.2-3.fc39 fedora 2.1 M cracklib x86_64 2.9.7-31.fc38 fedora 92 k crypto-policies noarch 20230301-1.gita12f7b2.fc39 fedora 93 k curl x86_64 8.0.1-2.fc39 fedora 350 k cyrus-sasl-lib x86_64 2.1.28-9.fc38 fedora 794 k debugedit x86_64 5.0-7.fc38 fedora 78 k dwz x86_64 0.15-2.fc38 fedora 135 k ed x86_64 1.19-2.fc38 fedora 78 k efi-srpm-macros noarch 5-7.fc38 fedora 22 k elfutils x86_64 0.189-1.fc39 fedora 536 k elfutils-debuginfod-client x86_64 0.189-1.fc39 fedora 39 k elfutils-default-yama-scope noarch 0.189-1.fc39 fedora 15 k elfutils-libelf x86_64 0.189-1.fc39 fedora 196 k elfutils-libs x86_64 0.189-1.fc39 fedora 260 k fedora-gpg-keys noarch 39-0.1 fedora 126 k fedora-release noarch 39-0.8 fedora 12 k fedora-release-identity-basic noarch 39-0.8 fedora 13 k fedora-repos noarch 39-0.1 fedora 9.4 k fedora-repos-rawhide noarch 39-0.1 fedora 9.0 k file x86_64 5.44-3.fc39 fedora 50 k file-libs x86_64 5.44-3.fc39 fedora 730 k filesystem x86_64 3.18-4.fc39 fedora 1.1 M fonts-srpm-macros noarch 1:2.0.5-11.fc38 fedora 26 k fpc-srpm-macros noarch 1.3-7.fc38 fedora 7.8 k gdb-minimal x86_64 13.1-4.fc39 fedora 4.2 M gdbm-libs x86_64 1:1.23-3.fc38 fedora 56 k ghc-srpm-macros noarch 1.6.1-1.fc38 fedora 8.0 k glibc x86_64 2.37.9000-5.fc39 fedora 2.1 M glibc-common x86_64 2.37.9000-5.fc39 fedora 323 k glibc-gconv-extra x86_64 2.37.9000-5.fc39 fedora 1.6 M gmp x86_64 1:6.2.1-4.fc38 fedora 313 k gnat-srpm-macros noarch 6-2.fc38 fedora 8.8 k go-srpm-macros noarch 3.2.0-2.fc38 fedora 27 k jansson x86_64 2.13.1-6.fc38 fedora 44 k kernel-srpm-macros noarch 1.0-16.fc38 fedora 9.3 k keyutils-libs x86_64 1.6.1-6.fc38 fedora 31 k krb5-libs x86_64 1.20.1-9.fc39 fedora 727 k libacl x86_64 2.3.1-7.fc39 fedora 23 k libarchive x86_64 3.6.1-5.fc39 fedora 400 k libattr x86_64 2.5.1-7.fc39 fedora 18 k libblkid x86_64 2.38.1-4.fc38 fedora 106 k libbrotli x86_64 1.0.9-11.fc38 fedora 317 k libcap x86_64 2.48-6.fc38 fedora 67 k libcap-ng x86_64 0.8.3-5.fc38 fedora 32 k libcom_err x86_64 1.46.5-4.fc38 fedora 26 k libcurl x86_64 8.0.1-2.fc39 fedora 313 k libdb x86_64 5.3.28-55.fc38 fedora 758 k libeconf x86_64 0.4.0-5.fc38 fedora 27 k libevent x86_64 2.1.12-8.fc38 fedora 257 k libfdisk x86_64 2.38.1-4.fc38 fedora 161 k libffi x86_64 3.4.4-2.fc38 fedora 38 k libgcc x86_64 13.0.1-0.12.fc39 fedora 104 k libgomp x86_64 13.0.1-0.12.fc39 fedora 313 k libidn2 x86_64 2.3.4-2.fc38 fedora 160 k libmount x86_64 2.38.1-4.fc38 fedora 135 k libnghttp2 x86_64 1.52.0-1.fc39 fedora 75 k libnsl2 x86_64 2.0.0-5.fc38 fedora 30 k libpkgconf x86_64 1.9.4-1.fc39 fedora 38 k libpsl x86_64 0.21.2-2.fc38 fedora 65 k libpwquality x86_64 1.4.5-3.fc38 fedora 119 k libselinux x86_64 3.5-1.fc39 fedora 87 k libsemanage x86_64 3.5-2.fc39 fedora 120 k libsepol x86_64 3.5-1.fc39 fedora 324 k libsigsegv x86_64 2.14-4.fc38 fedora 27 k libsmartcols x86_64 2.38.1-4.fc38 fedora 64 k libssh x86_64 0.10.4-4.fc39 fedora 209 k libssh-config noarch 0.10.4-4.fc39 fedora 8.9 k libstdc++ x86_64 13.0.1-0.12.fc39 fedora 858 k libtasn1 x86_64 4.19.0-2.fc38 fedora 74 k libtirpc x86_64 1.3.3-1.fc38 fedora 94 k libunistring1.0 x86_64 1.0-1.fc38 fedora 539 k libutempter x86_64 1.2.1-9.fc39 fedora 26 k libuuid x86_64 2.38.1-4.fc38 fedora 28 k libverto x86_64 0.3.2-5.fc38 fedora 21 k libxcrypt x86_64 4.4.33-7.fc39 fedora 120 k libxml2 x86_64 2.10.3-3.fc38 fedora 700 k libzstd x86_64 1.5.4-1.fc39 fedora 302 k lua-libs x86_64 5.4.4-9.fc39 fedora 133 k lua-srpm-macros noarch 1-8.fc38 fedora 8.6 k lz4-libs x86_64 1.9.4-2.fc38 fedora 67 k mpfr x86_64 4.1.1-3.fc38 fedora 600 k ncurses-base noarch 6.4-3.20230114.fc38 fedora 87 k ncurses-libs x86_64 6.4-3.20230114.fc38 fedora 333 k ocaml-srpm-macros noarch 7-3.fc38 fedora 13 k openblas-srpm-macros noarch 2-13.fc38 fedora 7.5 k openldap x86_64 2.6.4-1.fc39 fedora 255 k openssl-libs x86_64 1:3.0.8-2.fc39 fedora 2.1 M p11-kit x86_64 0.24.1-6.fc38 fedora 359 k p11-kit-trust x86_64 0.24.1-6.fc38 fedora 136 k package-notes-srpm-macros noarch 0.5-7.fc38 fedora 11 k pam x86_64 1.5.2-17.fc39 fedora 533 k pam-libs x86_64 1.5.2-17.fc39 fedora 57 k pcre2 x86_64 10.42-1.fc38.1 fedora 234 k pcre2-syntax noarch 10.42-1.fc38.1 fedora 144 k perl-srpm-macros noarch 1-48.fc38 fedora 8.4 k pkgconf x86_64 1.9.4-1.fc39 fedora 42 k pkgconf-m4 noarch 1.9.4-1.fc39 fedora 14 k pkgconf-pkg-config x86_64 1.9.4-1.fc39 fedora 9.6 k popt x86_64 1.19-2.fc38 fedora 67 k publicsuffix-list-dafsa noarch 20230318-1.fc39 fedora 60 k pyproject-srpm-macros noarch 1.6.3-1.fc39 fedora 14 k python-srpm-macros noarch 3.11-10.fc39 fedora 26 k qt5-srpm-macros noarch 5.15.8-2.fc38 fedora 8.1 k readline x86_64 8.2-3.fc38 fedora 212 k rpm x86_64 4.18.1-1.fc39 fedora 572 k rpm-build-libs x86_64 4.18.1-1.fc39 fedora 94 k rpm-libs x86_64 4.18.1-1.fc39 fedora 312 k rpm-sequoia x86_64 1.3.0-1.fc39 fedora 855 k rpmautospec-rpm-macros noarch 0.3.5-1.fc38 fedora 9.3 k rust-srpm-macros noarch 24-1.fc39 fedora 12 k setup noarch 2.14.3-3.fc39 fedora 152 k sqlite-libs x86_64 3.41.2-1.fc39 fedora 669 k systemd-libs x86_64 253.2-1.fc39 fedora 662 k tzdata noarch 2023c-1.fc39 fedora 718 k util-linux-core x86_64 2.38.1-4.fc38 fedora 473 k xxhash-libs x86_64 0.8.1-4.fc38 fedora 40 k xz-libs x86_64 5.4.1-1.fc38 fedora 108 k zip x86_64 3.0-36.fc38 fedora 265 k zlib x86_64 1.2.13-3.fc38 fedora 95 k zstd x86_64 1.5.4-1.fc39 fedora 475 k Installing Groups: Buildsystem building group Transaction Summary ================================================================================ Install 152 Packages Total size: 53 M Installed size: 185 M Downloading Packages: [SKIPPED] alternatives-1.22-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] ansible-srpm-macros-1-9.1.fc38.noarch.rpm: Already downloaded [SKIPPED] audit-libs-3.1-2.fc39.x86_64.rpm: Already downloaded [SKIPPED] authselect-1.4.2-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] authselect-libs-1.4.2-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] basesystem-11-15.fc38.noarch.rpm: Already downloaded [SKIPPED] bash-5.2.15-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] binutils-2.40-5.fc39.x86_64.rpm: Already downloaded [SKIPPED] binutils-gold-2.40-5.fc39.x86_64.rpm: Already downloaded [SKIPPED] bzip2-1.0.8-13.fc38.x86_64.rpm: Already downloaded [SKIPPED] bzip2-libs-1.0.8-13.fc38.x86_64.rpm: Already downloaded [SKIPPED] ca-certificates-2023.2.60-2.fc38.noarch.rpm: Already downloaded [SKIPPED] coreutils-9.2-3.fc39.x86_64.rpm: Already downloaded [SKIPPED] coreutils-common-9.2-3.fc39.x86_64.rpm: Already downloaded [SKIPPED] cpio-2.13-14.fc38.x86_64.rpm: Already downloaded [SKIPPED] cracklib-2.9.7-31.fc38.x86_64.rpm: Already downloaded [SKIPPED] crypto-policies-20230301-1.gita12f7b2.fc39.noarch.rpm: Already downloaded [SKIPPED] curl-8.0.1-2.fc39.x86_64.rpm: Already downloaded [SKIPPED] cyrus-sasl-lib-2.1.28-9.fc38.x86_64.rpm: Already downloaded [SKIPPED] debugedit-5.0-7.fc38.x86_64.rpm: Already downloaded [SKIPPED] diffutils-3.9-4.fc39.x86_64.rpm: Already downloaded [SKIPPED] dwz-0.15-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] ed-1.19-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] efi-srpm-macros-5-7.fc38.noarch.rpm: Already downloaded [SKIPPED] elfutils-0.189-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] elfutils-debuginfod-client-0.189-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] elfutils-default-yama-scope-0.189-1.fc39.noarch.rpm: Already downloaded [SKIPPED] elfutils-libelf-0.189-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] elfutils-libs-0.189-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] fedora-gpg-keys-39-0.1.noarch.rpm: Already downloaded [SKIPPED] fedora-release-39-0.8.noarch.rpm: Already downloaded [SKIPPED] fedora-release-common-39-0.8.noarch.rpm: Already downloaded [SKIPPED] fedora-release-identity-basic-39-0.8.noarch.rpm: Already downloaded [SKIPPED] fedora-repos-39-0.1.noarch.rpm: Already downloaded [SKIPPED] fedora-repos-rawhide-39-0.1.noarch.rpm: Already downloaded [SKIPPED] file-5.44-3.fc39.x86_64.rpm: Already downloaded [SKIPPED] file-libs-5.44-3.fc39.x86_64.rpm: Already downloaded [SKIPPED] filesystem-3.18-4.fc39.x86_64.rpm: Already downloaded [SKIPPED] findutils-4.9.0-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] fonts-srpm-macros-2.0.5-11.fc38.noarch.rpm: Already downloaded [SKIPPED] fpc-srpm-macros-1.3-7.fc38.noarch.rpm: Already downloaded [SKIPPED] gawk-5.1.1-5.fc38.x86_64.rpm: Already downloaded [SKIPPED] gdb-minimal-13.1-4.fc39.x86_64.rpm: Already downloaded [SKIPPED] gdbm-libs-1.23-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] ghc-srpm-macros-1.6.1-1.fc38.noarch.rpm: Already downloaded [SKIPPED] glibc-2.37.9000-5.fc39.x86_64.rpm: Already downloaded [SKIPPED] glibc-common-2.37.9000-5.fc39.x86_64.rpm: Already downloaded [SKIPPED] glibc-gconv-extra-2.37.9000-5.fc39.x86_64.rpm: Already downloaded [SKIPPED] glibc-minimal-langpack-2.37.9000-5.fc39.x86_64.rpm: Already downloaded [SKIPPED] gmp-6.2.1-4.fc38.x86_64.rpm: Already downloaded [SKIPPED] gnat-srpm-macros-6-2.fc38.noarch.rpm: Already downloaded [SKIPPED] go-srpm-macros-3.2.0-2.fc38.noarch.rpm: Already downloaded [SKIPPED] grep-3.9-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] gzip-1.12-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] info-7.0.3-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] jansson-2.13.1-6.fc38.x86_64.rpm: Already downloaded [SKIPPED] kernel-srpm-macros-1.0-16.fc38.noarch.rpm: Already downloaded [SKIPPED] keyutils-libs-1.6.1-6.fc38.x86_64.rpm: Already downloaded [SKIPPED] krb5-libs-1.20.1-9.fc39.x86_64.rpm: Already downloaded [SKIPPED] libacl-2.3.1-7.fc39.x86_64.rpm: Already downloaded [SKIPPED] libarchive-3.6.1-5.fc39.x86_64.rpm: Already downloaded [SKIPPED] libattr-2.5.1-7.fc39.x86_64.rpm: Already downloaded [SKIPPED] libblkid-2.38.1-4.fc38.x86_64.rpm: Already downloaded [SKIPPED] libbrotli-1.0.9-11.fc38.x86_64.rpm: Already downloaded [SKIPPED] libcap-2.48-6.fc38.x86_64.rpm: Already downloaded [SKIPPED] libcap-ng-0.8.3-5.fc38.x86_64.rpm: Already downloaded [SKIPPED] libcom_err-1.46.5-4.fc38.x86_64.rpm: Already downloaded [SKIPPED] libcurl-8.0.1-2.fc39.x86_64.rpm: Already downloaded [SKIPPED] libdb-5.3.28-55.fc38.x86_64.rpm: Already downloaded [SKIPPED] libeconf-0.4.0-5.fc38.x86_64.rpm: Already downloaded [SKIPPED] libevent-2.1.12-8.fc38.x86_64.rpm: Already downloaded [SKIPPED] libfdisk-2.38.1-4.fc38.x86_64.rpm: Already downloaded [SKIPPED] libffi-3.4.4-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] libgcc-13.0.1-0.12.fc39.x86_64.rpm: Already downloaded [SKIPPED] libgomp-13.0.1-0.12.fc39.x86_64.rpm: Already downloaded [SKIPPED] libidn2-2.3.4-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] libmount-2.38.1-4.fc38.x86_64.rpm: Already downloaded [SKIPPED] libnghttp2-1.52.0-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] libnsl2-2.0.0-5.fc38.x86_64.rpm: Already downloaded [SKIPPED] libpkgconf-1.9.4-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] libpsl-0.21.2-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] libpwquality-1.4.5-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] libselinux-3.5-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] libsemanage-3.5-2.fc39.x86_64.rpm: Already downloaded [SKIPPED] libsepol-3.5-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] libsigsegv-2.14-4.fc38.x86_64.rpm: Already downloaded [SKIPPED] libsmartcols-2.38.1-4.fc38.x86_64.rpm: Already downloaded [SKIPPED] libssh-0.10.4-4.fc39.x86_64.rpm: Already downloaded [SKIPPED] libssh-config-0.10.4-4.fc39.noarch.rpm: Already downloaded [SKIPPED] libstdc++-13.0.1-0.12.fc39.x86_64.rpm: Already downloaded [SKIPPED] libtasn1-4.19.0-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] libtirpc-1.3.3-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] libunistring1.0-1.0-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] libutempter-1.2.1-9.fc39.x86_64.rpm: Already downloaded [SKIPPED] libuuid-2.38.1-4.fc38.x86_64.rpm: Already downloaded [SKIPPED] libverto-0.3.2-5.fc38.x86_64.rpm: Already downloaded [SKIPPED] libxcrypt-4.4.33-7.fc39.x86_64.rpm: Already downloaded [SKIPPED] libxml2-2.10.3-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] libzstd-1.5.4-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] lua-libs-5.4.4-9.fc39.x86_64.rpm: Already downloaded [SKIPPED] lua-srpm-macros-1-8.fc38.noarch.rpm: Already downloaded [SKIPPED] lz4-libs-1.9.4-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] mpfr-4.1.1-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] ncurses-base-6.4-3.20230114.fc38.noarch.rpm: Already downloaded [SKIPPED] ncurses-libs-6.4-3.20230114.fc38.x86_64.rpm: Already downloaded [SKIPPED] ocaml-srpm-macros-7-3.fc38.noarch.rpm: Already downloaded [SKIPPED] openblas-srpm-macros-2-13.fc38.noarch.rpm: Already downloaded [SKIPPED] openldap-2.6.4-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] openssl-libs-3.0.8-2.fc39.x86_64.rpm: Already downloaded [SKIPPED] p11-kit-0.24.1-6.fc38.x86_64.rpm: Already downloaded [SKIPPED] p11-kit-trust-0.24.1-6.fc38.x86_64.rpm: Already downloaded [SKIPPED] package-notes-srpm-macros-0.5-7.fc38.noarch.rpm: Already downloaded [SKIPPED] pam-1.5.2-17.fc39.x86_64.rpm: Already downloaded [SKIPPED] pam-libs-1.5.2-17.fc39.x86_64.rpm: Already downloaded [SKIPPED] patch-2.7.6-21.fc39.x86_64.rpm: Already downloaded [SKIPPED] pcre2-10.42-1.fc38.1.x86_64.rpm: Already downloaded [SKIPPED] pcre2-syntax-10.42-1.fc38.1.noarch.rpm: Already downloaded [SKIPPED] perl-srpm-macros-1-48.fc38.noarch.rpm: Already downloaded [SKIPPED] pkgconf-1.9.4-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] pkgconf-m4-1.9.4-1.fc39.noarch.rpm: Already downloaded [SKIPPED] pkgconf-pkg-config-1.9.4-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] popt-1.19-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] publicsuffix-list-dafsa-20230318-1.fc39.noarch.rpm: Already downloaded [SKIPPED] pyproject-srpm-macros-1.6.3-1.fc39.noarch.rpm: Already downloaded [SKIPPED] python-srpm-macros-3.11-10.fc39.noarch.rpm: Already downloaded [SKIPPED] qt5-srpm-macros-5.15.8-2.fc38.noarch.rpm: Already downloaded [SKIPPED] readline-8.2-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] redhat-rpm-config-254-1.fc39.noarch.rpm: Already downloaded [SKIPPED] rpm-4.18.1-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] rpm-build-4.18.1-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] rpm-build-libs-4.18.1-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] rpm-libs-4.18.1-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] rpm-sequoia-1.3.0-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] rpmautospec-rpm-macros-0.3.5-1.fc38.noarch.rpm: Already downloaded [SKIPPED] rust-srpm-macros-24-1.fc39.noarch.rpm: Already downloaded [SKIPPED] sed-4.8-12.fc38.x86_64.rpm: Already downloaded [SKIPPED] setup-2.14.3-3.fc39.noarch.rpm: Already downloaded [SKIPPED] shadow-utils-4.13-6.fc39.x86_64.rpm: Already downloaded [SKIPPED] sqlite-libs-3.41.2-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] systemd-libs-253.2-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] tar-1.34-8.fc39.x86_64.rpm: Already downloaded [SKIPPED] tzdata-2023c-1.fc39.noarch.rpm: Already downloaded [SKIPPED] unzip-6.0-60.fc38.x86_64.rpm: Already downloaded [SKIPPED] util-linux-2.38.1-4.fc38.x86_64.rpm: Already downloaded [SKIPPED] util-linux-core-2.38.1-4.fc38.x86_64.rpm: Already downloaded [SKIPPED] which-2.21-39.fc39.x86_64.rpm: Already downloaded [SKIPPED] xxhash-libs-0.8.1-4.fc38.x86_64.rpm: Already downloaded [SKIPPED] xz-5.4.1-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] xz-libs-5.4.1-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] zip-3.0-36.fc38.x86_64.rpm: Already downloaded [SKIPPED] zlib-1.2.13-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] zstd-1.5.4-1.fc39.x86_64.rpm: Already downloaded fedora 1.6 MB/s | 1.6 kB 00:00 Importing GPG key 0x18B8E74C: Userid : "Fedora (39) " Fingerprint: E8F2 3996 F232 1864 0CB4 4CBE 75CF 5AC4 18B8 E74C From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-39-primary Key imported successfully fedora 1.6 MB/s | 1.6 kB 00:00 GPG key at file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-39-primary (0x18B8E74C) is already installed fedora 1.6 MB/s | 1.6 kB 00:00 Importing GPG key 0xEB10B464: Userid : "Fedora (38) " Fingerprint: 6A51 BBAB BA3D 5467 B617 1221 809A 8D7C EB10 B464 From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-38-primary Key imported successfully Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Running scriptlet: filesystem-3.18-4.fc39.x86_64 1/1 Preparing : 1/1 Installing : libgcc-13.0.1-0.12.fc39.x86_64 1/152 Running scriptlet: libgcc-13.0.1-0.12.fc39.x86_64 1/152 Installing : crypto-policies-20230301-1.gita12f7b2.fc39.noarc 2/152 Running scriptlet: crypto-policies-20230301-1.gita12f7b2.fc39.noarc 2/152 Installing : tzdata-2023c-1.fc39.noarch 3/152 Installing : fedora-release-identity-basic-39-0.8.noarch 4/152 Installing : rust-srpm-macros-24-1.fc39.noarch 5/152 Installing : qt5-srpm-macros-5.15.8-2.fc38.noarch 6/152 Installing : pyproject-srpm-macros-1.6.3-1.fc39.noarch 7/152 Installing : publicsuffix-list-dafsa-20230318-1.fc39.noarch 8/152 Installing : pkgconf-m4-1.9.4-1.fc39.noarch 9/152 Installing : perl-srpm-macros-1-48.fc38.noarch 10/152 Installing : pcre2-syntax-10.42-1.fc38.1.noarch 11/152 Installing : package-notes-srpm-macros-0.5-7.fc38.noarch 12/152 Installing : openblas-srpm-macros-2-13.fc38.noarch 13/152 Installing : ocaml-srpm-macros-7-3.fc38.noarch 14/152 Installing : ncurses-base-6.4-3.20230114.fc38.noarch 15/152 Installing : libssh-config-0.10.4-4.fc39.noarch 16/152 Installing : kernel-srpm-macros-1.0-16.fc38.noarch 17/152 Installing : gnat-srpm-macros-6-2.fc38.noarch 18/152 Installing : ghc-srpm-macros-1.6.1-1.fc38.noarch 19/152 Installing : fpc-srpm-macros-1.3-7.fc38.noarch 20/152 Installing : fedora-gpg-keys-39-0.1.noarch 21/152 Installing : fedora-release-39-0.8.noarch 22/152 Installing : fedora-release-common-39-0.8.noarch 23/152 Installing : fedora-repos-rawhide-39-0.1.noarch 24/152 Installing : fedora-repos-39-0.1.noarch 25/152 Installing : setup-2.14.3-3.fc39.noarch 26/152 warning: /etc/hosts created as /etc/hosts.rpmnew Running scriptlet: setup-2.14.3-3.fc39.noarch 26/152 Installing : filesystem-3.18-4.fc39.x86_64 27/152 Installing : basesystem-11-15.fc38.noarch 28/152 Installing : glibc-gconv-extra-2.37.9000-5.fc39.x86_64 29/152 Running scriptlet: glibc-gconv-extra-2.37.9000-5.fc39.x86_64 29/152 Installing : glibc-minimal-langpack-2.37.9000-5.fc39.x86_64 30/152 Installing : glibc-common-2.37.9000-5.fc39.x86_64 31/152 Running scriptlet: glibc-2.37.9000-5.fc39.x86_64 32/152 Installing : glibc-2.37.9000-5.fc39.x86_64 32/152 Running scriptlet: glibc-2.37.9000-5.fc39.x86_64 32/152 Installing : ncurses-libs-6.4-3.20230114.fc38.x86_64 33/152 Installing : bash-5.2.15-3.fc38.x86_64 34/152 Running scriptlet: bash-5.2.15-3.fc38.x86_64 34/152 Installing : zlib-1.2.13-3.fc38.x86_64 35/152 Installing : xz-libs-5.4.1-1.fc38.x86_64 36/152 Installing : bzip2-libs-1.0.8-13.fc38.x86_64 37/152 Installing : libzstd-1.5.4-1.fc39.x86_64 38/152 Installing : elfutils-libelf-0.189-1.fc39.x86_64 39/152 Installing : libstdc++-13.0.1-0.12.fc39.x86_64 40/152 Installing : libuuid-2.38.1-4.fc38.x86_64 41/152 Installing : popt-1.19-2.fc38.x86_64 42/152 Installing : libblkid-2.38.1-4.fc38.x86_64 43/152 Installing : readline-8.2-3.fc38.x86_64 44/152 Installing : gmp-1:6.2.1-4.fc38.x86_64 45/152 Installing : libattr-2.5.1-7.fc39.x86_64 46/152 Installing : libacl-2.3.1-7.fc39.x86_64 47/152 Installing : libcap-2.48-6.fc38.x86_64 48/152 Installing : libxcrypt-4.4.33-7.fc39.x86_64 49/152 Installing : libeconf-0.4.0-5.fc38.x86_64 50/152 Installing : lz4-libs-1.9.4-2.fc38.x86_64 51/152 Installing : systemd-libs-253.2-1.fc39.x86_64 52/152 Installing : mpfr-4.1.1-3.fc38.x86_64 53/152 Installing : dwz-0.15-2.fc38.x86_64 54/152 Installing : unzip-6.0-60.fc38.x86_64 55/152 Installing : file-libs-5.44-3.fc39.x86_64 56/152 Installing : file-5.44-3.fc39.x86_64 57/152 Installing : sqlite-libs-3.41.2-1.fc39.x86_64 58/152 Installing : alternatives-1.22-1.fc39.x86_64 59/152 Installing : jansson-2.13.1-6.fc38.x86_64 60/152 Installing : libcap-ng-0.8.3-5.fc38.x86_64 61/152 Installing : audit-libs-3.1-2.fc39.x86_64 62/152 Installing : pam-libs-1.5.2-17.fc39.x86_64 63/152 Installing : libcom_err-1.46.5-4.fc38.x86_64 64/152 Installing : libsepol-3.5-1.fc39.x86_64 65/152 Installing : libsmartcols-2.38.1-4.fc38.x86_64 66/152 Installing : libunistring1.0-1.0-1.fc38.x86_64 67/152 Installing : libidn2-2.3.4-2.fc38.x86_64 68/152 Installing : lua-libs-5.4.4-9.fc39.x86_64 69/152 Installing : pcre2-10.42-1.fc38.1.x86_64 70/152 Installing : libselinux-3.5-1.fc39.x86_64 71/152 Installing : sed-4.8-12.fc38.x86_64 72/152 Installing : grep-3.9-1.fc39.x86_64 73/152 Installing : findutils-1:4.9.0-3.fc38.x86_64 74/152 Installing : xz-5.4.1-1.fc38.x86_64 75/152 Installing : libmount-2.38.1-4.fc38.x86_64 76/152 Installing : util-linux-core-2.38.1-4.fc38.x86_64 77/152 Installing : libsemanage-3.5-2.fc39.x86_64 78/152 Installing : shadow-utils-2:4.13-6.fc39.x86_64 79/152 Running scriptlet: libutempter-1.2.1-9.fc39.x86_64 80/152 Installing : libutempter-1.2.1-9.fc39.x86_64 80/152 Installing : tar-2:1.34-8.fc39.x86_64 81/152 Installing : libpsl-0.21.2-2.fc38.x86_64 82/152 Installing : zip-3.0-36.fc38.x86_64 83/152 Installing : zstd-1.5.4-1.fc39.x86_64 84/152 Installing : libfdisk-2.38.1-4.fc38.x86_64 85/152 Installing : bzip2-1.0.8-13.fc38.x86_64 86/152 Installing : libxml2-2.10.3-3.fc38.x86_64 87/152 Installing : ed-1.19-2.fc38.x86_64 88/152 Installing : patch-2.7.6-21.fc39.x86_64 89/152 Installing : elfutils-default-yama-scope-0.189-1.fc39.noarch 90/152 Running scriptlet: elfutils-default-yama-scope-0.189-1.fc39.noarch 90/152 Installing : cpio-2.13-14.fc38.x86_64 91/152 Installing : diffutils-3.9-4.fc39.x86_64 92/152 Installing : gdbm-libs-1:1.23-3.fc38.x86_64 93/152 Installing : cyrus-sasl-lib-2.1.28-9.fc38.x86_64 94/152 Installing : keyutils-libs-1.6.1-6.fc38.x86_64 95/152 Installing : libbrotli-1.0.9-11.fc38.x86_64 96/152 Installing : libdb-5.3.28-55.fc38.x86_64 97/152 Installing : libffi-3.4.4-2.fc38.x86_64 98/152 Installing : p11-kit-0.24.1-6.fc38.x86_64 99/152 Installing : libgomp-13.0.1-0.12.fc39.x86_64 100/152 Installing : libnghttp2-1.52.0-1.fc39.x86_64 101/152 Installing : libpkgconf-1.9.4-1.fc39.x86_64 102/152 Installing : pkgconf-1.9.4-1.fc39.x86_64 103/152 Installing : pkgconf-pkg-config-1.9.4-1.fc39.x86_64 104/152 Installing : libsigsegv-2.14-4.fc38.x86_64 105/152 Installing : gawk-5.1.1-5.fc38.x86_64 106/152 Installing : libtasn1-4.19.0-2.fc38.x86_64 107/152 Installing : p11-kit-trust-0.24.1-6.fc38.x86_64 108/152 Running scriptlet: p11-kit-trust-0.24.1-6.fc38.x86_64 108/152 Installing : libverto-0.3.2-5.fc38.x86_64 109/152 Installing : xxhash-libs-0.8.1-4.fc38.x86_64 110/152 Installing : coreutils-common-9.2-3.fc39.x86_64 111/152 Installing : openssl-libs-1:3.0.8-2.fc39.x86_64 112/152 Installing : coreutils-9.2-3.fc39.x86_64 113/152 Running scriptlet: ca-certificates-2023.2.60-2.fc38.noarch 114/152 Installing : ca-certificates-2023.2.60-2.fc38.noarch 114/152 Running scriptlet: ca-certificates-2023.2.60-2.fc38.noarch 114/152 Installing : krb5-libs-1.20.1-9.fc39.x86_64 115/152 Installing : libtirpc-1.3.3-1.fc38.x86_64 116/152 Running scriptlet: authselect-libs-1.4.2-2.fc38.x86_64 117/152 Installing : authselect-libs-1.4.2-2.fc38.x86_64 117/152 Installing : gzip-1.12-3.fc38.x86_64 118/152 Installing : rpm-sequoia-1.3.0-1.fc39.x86_64 119/152 Installing : rpm-libs-4.18.1-1.fc39.x86_64 120/152 Installing : cracklib-2.9.7-31.fc38.x86_64 121/152 Installing : libpwquality-1.4.5-3.fc38.x86_64 122/152 Installing : authselect-1.4.2-2.fc38.x86_64 123/152 Installing : libnsl2-2.0.0-5.fc38.x86_64 124/152 Installing : pam-1.5.2-17.fc39.x86_64 125/152 Installing : libssh-0.10.4-4.fc39.x86_64 126/152 Installing : libarchive-3.6.1-5.fc39.x86_64 127/152 Installing : libevent-2.1.12-8.fc38.x86_64 128/152 Installing : openldap-2.6.4-1.fc39.x86_64 129/152 Installing : libcurl-8.0.1-2.fc39.x86_64 130/152 Installing : elfutils-libs-0.189-1.fc39.x86_64 131/152 Installing : elfutils-debuginfod-client-0.189-1.fc39.x86_64 132/152 Installing : binutils-gold-2.40-5.fc39.x86_64 133/152 Installing : binutils-2.40-5.fc39.x86_64 134/152 Running scriptlet: binutils-2.40-5.fc39.x86_64 134/152 Installing : elfutils-0.189-1.fc39.x86_64 135/152 Installing : gdb-minimal-13.1-4.fc39.x86_64 136/152 Installing : debugedit-5.0-7.fc38.x86_64 137/152 Installing : rpm-build-libs-4.18.1-1.fc39.x86_64 138/152 Installing : curl-8.0.1-2.fc39.x86_64 139/152 Running scriptlet: rpm-4.18.1-1.fc39.x86_64 140/152 Installing : rpm-4.18.1-1.fc39.x86_64 140/152 Installing : efi-srpm-macros-5-7.fc38.noarch 141/152 Installing : lua-srpm-macros-1-8.fc38.noarch 142/152 Installing : rpmautospec-rpm-macros-0.3.5-1.fc38.noarch 143/152 Installing : ansible-srpm-macros-1-9.1.fc38.noarch 144/152 Installing : fonts-srpm-macros-1:2.0.5-11.fc38.noarch 145/152 Installing : go-srpm-macros-3.2.0-2.fc38.noarch 146/152 Installing : python-srpm-macros-3.11-10.fc39.noarch 147/152 Installing : redhat-rpm-config-254-1.fc39.noarch 148/152 Installing : rpm-build-4.18.1-1.fc39.x86_64 149/152 Installing : util-linux-2.38.1-4.fc38.x86_64 150/152 Installing : which-2.21-39.fc39.x86_64 151/152 Installing : info-7.0.3-1.fc39.x86_64 152/152 Running scriptlet: filesystem-3.18-4.fc39.x86_64 152/152 Running scriptlet: ca-certificates-2023.2.60-2.fc38.noarch 152/152 Running scriptlet: authselect-libs-1.4.2-2.fc38.x86_64 152/152 Running scriptlet: rpm-4.18.1-1.fc39.x86_64 152/152 Running scriptlet: info-7.0.3-1.fc39.x86_64 152/152 Verifying : alternatives-1.22-1.fc39.x86_64 1/152 Verifying : ansible-srpm-macros-1-9.1.fc38.noarch 2/152 Verifying : audit-libs-3.1-2.fc39.x86_64 3/152 Verifying : authselect-1.4.2-2.fc38.x86_64 4/152 Verifying : authselect-libs-1.4.2-2.fc38.x86_64 5/152 Verifying : basesystem-11-15.fc38.noarch 6/152 Verifying : bash-5.2.15-3.fc38.x86_64 7/152 Verifying : binutils-2.40-5.fc39.x86_64 8/152 Verifying : binutils-gold-2.40-5.fc39.x86_64 9/152 Verifying : bzip2-1.0.8-13.fc38.x86_64 10/152 Verifying : bzip2-libs-1.0.8-13.fc38.x86_64 11/152 Verifying : ca-certificates-2023.2.60-2.fc38.noarch 12/152 Verifying : coreutils-9.2-3.fc39.x86_64 13/152 Verifying : coreutils-common-9.2-3.fc39.x86_64 14/152 Verifying : cpio-2.13-14.fc38.x86_64 15/152 Verifying : cracklib-2.9.7-31.fc38.x86_64 16/152 Verifying : crypto-policies-20230301-1.gita12f7b2.fc39.noarc 17/152 Verifying : curl-8.0.1-2.fc39.x86_64 18/152 Verifying : cyrus-sasl-lib-2.1.28-9.fc38.x86_64 19/152 Verifying : debugedit-5.0-7.fc38.x86_64 20/152 Verifying : diffutils-3.9-4.fc39.x86_64 21/152 Verifying : dwz-0.15-2.fc38.x86_64 22/152 Verifying : ed-1.19-2.fc38.x86_64 23/152 Verifying : efi-srpm-macros-5-7.fc38.noarch 24/152 Verifying : elfutils-0.189-1.fc39.x86_64 25/152 Verifying : elfutils-debuginfod-client-0.189-1.fc39.x86_64 26/152 Verifying : elfutils-default-yama-scope-0.189-1.fc39.noarch 27/152 Verifying : elfutils-libelf-0.189-1.fc39.x86_64 28/152 Verifying : elfutils-libs-0.189-1.fc39.x86_64 29/152 Verifying : fedora-gpg-keys-39-0.1.noarch 30/152 Verifying : fedora-release-39-0.8.noarch 31/152 Verifying : fedora-release-common-39-0.8.noarch 32/152 Verifying : fedora-release-identity-basic-39-0.8.noarch 33/152 Verifying : fedora-repos-39-0.1.noarch 34/152 Verifying : fedora-repos-rawhide-39-0.1.noarch 35/152 Verifying : file-5.44-3.fc39.x86_64 36/152 Verifying : file-libs-5.44-3.fc39.x86_64 37/152 Verifying : filesystem-3.18-4.fc39.x86_64 38/152 Verifying : findutils-1:4.9.0-3.fc38.x86_64 39/152 Verifying : fonts-srpm-macros-1:2.0.5-11.fc38.noarch 40/152 Verifying : fpc-srpm-macros-1.3-7.fc38.noarch 41/152 Verifying : gawk-5.1.1-5.fc38.x86_64 42/152 Verifying : gdb-minimal-13.1-4.fc39.x86_64 43/152 Verifying : gdbm-libs-1:1.23-3.fc38.x86_64 44/152 Verifying : ghc-srpm-macros-1.6.1-1.fc38.noarch 45/152 Verifying : glibc-2.37.9000-5.fc39.x86_64 46/152 Verifying : glibc-common-2.37.9000-5.fc39.x86_64 47/152 Verifying : glibc-gconv-extra-2.37.9000-5.fc39.x86_64 48/152 Verifying : glibc-minimal-langpack-2.37.9000-5.fc39.x86_64 49/152 Verifying : gmp-1:6.2.1-4.fc38.x86_64 50/152 Verifying : gnat-srpm-macros-6-2.fc38.noarch 51/152 Verifying : go-srpm-macros-3.2.0-2.fc38.noarch 52/152 Verifying : grep-3.9-1.fc39.x86_64 53/152 Verifying : gzip-1.12-3.fc38.x86_64 54/152 Verifying : info-7.0.3-1.fc39.x86_64 55/152 Verifying : jansson-2.13.1-6.fc38.x86_64 56/152 Verifying : kernel-srpm-macros-1.0-16.fc38.noarch 57/152 Verifying : keyutils-libs-1.6.1-6.fc38.x86_64 58/152 Verifying : krb5-libs-1.20.1-9.fc39.x86_64 59/152 Verifying : libacl-2.3.1-7.fc39.x86_64 60/152 Verifying : libarchive-3.6.1-5.fc39.x86_64 61/152 Verifying : libattr-2.5.1-7.fc39.x86_64 62/152 Verifying : libblkid-2.38.1-4.fc38.x86_64 63/152 Verifying : libbrotli-1.0.9-11.fc38.x86_64 64/152 Verifying : libcap-2.48-6.fc38.x86_64 65/152 Verifying : libcap-ng-0.8.3-5.fc38.x86_64 66/152 Verifying : libcom_err-1.46.5-4.fc38.x86_64 67/152 Verifying : libcurl-8.0.1-2.fc39.x86_64 68/152 Verifying : libdb-5.3.28-55.fc38.x86_64 69/152 Verifying : libeconf-0.4.0-5.fc38.x86_64 70/152 Verifying : libevent-2.1.12-8.fc38.x86_64 71/152 Verifying : libfdisk-2.38.1-4.fc38.x86_64 72/152 Verifying : libffi-3.4.4-2.fc38.x86_64 73/152 Verifying : libgcc-13.0.1-0.12.fc39.x86_64 74/152 Verifying : libgomp-13.0.1-0.12.fc39.x86_64 75/152 Verifying : libidn2-2.3.4-2.fc38.x86_64 76/152 Verifying : libmount-2.38.1-4.fc38.x86_64 77/152 Verifying : libnghttp2-1.52.0-1.fc39.x86_64 78/152 Verifying : libnsl2-2.0.0-5.fc38.x86_64 79/152 Verifying : libpkgconf-1.9.4-1.fc39.x86_64 80/152 Verifying : libpsl-0.21.2-2.fc38.x86_64 81/152 Verifying : libpwquality-1.4.5-3.fc38.x86_64 82/152 Verifying : libselinux-3.5-1.fc39.x86_64 83/152 Verifying : libsemanage-3.5-2.fc39.x86_64 84/152 Verifying : libsepol-3.5-1.fc39.x86_64 85/152 Verifying : libsigsegv-2.14-4.fc38.x86_64 86/152 Verifying : libsmartcols-2.38.1-4.fc38.x86_64 87/152 Verifying : libssh-0.10.4-4.fc39.x86_64 88/152 Verifying : libssh-config-0.10.4-4.fc39.noarch 89/152 Verifying : libstdc++-13.0.1-0.12.fc39.x86_64 90/152 Verifying : libtasn1-4.19.0-2.fc38.x86_64 91/152 Verifying : libtirpc-1.3.3-1.fc38.x86_64 92/152 Verifying : libunistring1.0-1.0-1.fc38.x86_64 93/152 Verifying : libutempter-1.2.1-9.fc39.x86_64 94/152 Verifying : libuuid-2.38.1-4.fc38.x86_64 95/152 Verifying : libverto-0.3.2-5.fc38.x86_64 96/152 Verifying : libxcrypt-4.4.33-7.fc39.x86_64 97/152 Verifying : libxml2-2.10.3-3.fc38.x86_64 98/152 Verifying : libzstd-1.5.4-1.fc39.x86_64 99/152 Verifying : lua-libs-5.4.4-9.fc39.x86_64 100/152 Verifying : lua-srpm-macros-1-8.fc38.noarch 101/152 Verifying : lz4-libs-1.9.4-2.fc38.x86_64 102/152 Verifying : mpfr-4.1.1-3.fc38.x86_64 103/152 Verifying : ncurses-base-6.4-3.20230114.fc38.noarch 104/152 Verifying : ncurses-libs-6.4-3.20230114.fc38.x86_64 105/152 Verifying : ocaml-srpm-macros-7-3.fc38.noarch 106/152 Verifying : openblas-srpm-macros-2-13.fc38.noarch 107/152 Verifying : openldap-2.6.4-1.fc39.x86_64 108/152 Verifying : openssl-libs-1:3.0.8-2.fc39.x86_64 109/152 Verifying : p11-kit-0.24.1-6.fc38.x86_64 110/152 Verifying : p11-kit-trust-0.24.1-6.fc38.x86_64 111/152 Verifying : package-notes-srpm-macros-0.5-7.fc38.noarch 112/152 Verifying : pam-1.5.2-17.fc39.x86_64 113/152 Verifying : pam-libs-1.5.2-17.fc39.x86_64 114/152 Verifying : patch-2.7.6-21.fc39.x86_64 115/152 Verifying : pcre2-10.42-1.fc38.1.x86_64 116/152 Verifying : pcre2-syntax-10.42-1.fc38.1.noarch 117/152 Verifying : perl-srpm-macros-1-48.fc38.noarch 118/152 Verifying : pkgconf-1.9.4-1.fc39.x86_64 119/152 Verifying : pkgconf-m4-1.9.4-1.fc39.noarch 120/152 Verifying : pkgconf-pkg-config-1.9.4-1.fc39.x86_64 121/152 Verifying : popt-1.19-2.fc38.x86_64 122/152 Verifying : publicsuffix-list-dafsa-20230318-1.fc39.noarch 123/152 Verifying : pyproject-srpm-macros-1.6.3-1.fc39.noarch 124/152 Verifying : python-srpm-macros-3.11-10.fc39.noarch 125/152 Verifying : qt5-srpm-macros-5.15.8-2.fc38.noarch 126/152 Verifying : readline-8.2-3.fc38.x86_64 127/152 Verifying : redhat-rpm-config-254-1.fc39.noarch 128/152 Verifying : rpm-4.18.1-1.fc39.x86_64 129/152 Verifying : rpm-build-4.18.1-1.fc39.x86_64 130/152 Verifying : rpm-build-libs-4.18.1-1.fc39.x86_64 131/152 Verifying : rpm-libs-4.18.1-1.fc39.x86_64 132/152 Verifying : rpm-sequoia-1.3.0-1.fc39.x86_64 133/152 Verifying : rpmautospec-rpm-macros-0.3.5-1.fc38.noarch 134/152 Verifying : rust-srpm-macros-24-1.fc39.noarch 135/152 Verifying : sed-4.8-12.fc38.x86_64 136/152 Verifying : setup-2.14.3-3.fc39.noarch 137/152 Verifying : shadow-utils-2:4.13-6.fc39.x86_64 138/152 Verifying : sqlite-libs-3.41.2-1.fc39.x86_64 139/152 Verifying : systemd-libs-253.2-1.fc39.x86_64 140/152 Verifying : tar-2:1.34-8.fc39.x86_64 141/152 Verifying : tzdata-2023c-1.fc39.noarch 142/152 Verifying : unzip-6.0-60.fc38.x86_64 143/152 Verifying : util-linux-2.38.1-4.fc38.x86_64 144/152 Verifying : util-linux-core-2.38.1-4.fc38.x86_64 145/152 Verifying : which-2.21-39.fc39.x86_64 146/152 Verifying : xxhash-libs-0.8.1-4.fc38.x86_64 147/152 Verifying : xz-5.4.1-1.fc38.x86_64 148/152 Verifying : xz-libs-5.4.1-1.fc38.x86_64 149/152 Verifying : zip-3.0-36.fc38.x86_64 150/152 Verifying : zlib-1.2.13-3.fc38.x86_64 151/152 Verifying : zstd-1.5.4-1.fc39.x86_64 152/152 Installed: alternatives-1.22-1.fc39.x86_64 ansible-srpm-macros-1-9.1.fc38.noarch audit-libs-3.1-2.fc39.x86_64 authselect-1.4.2-2.fc38.x86_64 authselect-libs-1.4.2-2.fc38.x86_64 basesystem-11-15.fc38.noarch bash-5.2.15-3.fc38.x86_64 binutils-2.40-5.fc39.x86_64 binutils-gold-2.40-5.fc39.x86_64 bzip2-1.0.8-13.fc38.x86_64 bzip2-libs-1.0.8-13.fc38.x86_64 ca-certificates-2023.2.60-2.fc38.noarch coreutils-9.2-3.fc39.x86_64 coreutils-common-9.2-3.fc39.x86_64 cpio-2.13-14.fc38.x86_64 cracklib-2.9.7-31.fc38.x86_64 crypto-policies-20230301-1.gita12f7b2.fc39.noarch curl-8.0.1-2.fc39.x86_64 cyrus-sasl-lib-2.1.28-9.fc38.x86_64 debugedit-5.0-7.fc38.x86_64 diffutils-3.9-4.fc39.x86_64 dwz-0.15-2.fc38.x86_64 ed-1.19-2.fc38.x86_64 efi-srpm-macros-5-7.fc38.noarch elfutils-0.189-1.fc39.x86_64 elfutils-debuginfod-client-0.189-1.fc39.x86_64 elfutils-default-yama-scope-0.189-1.fc39.noarch elfutils-libelf-0.189-1.fc39.x86_64 elfutils-libs-0.189-1.fc39.x86_64 fedora-gpg-keys-39-0.1.noarch fedora-release-39-0.8.noarch fedora-release-common-39-0.8.noarch fedora-release-identity-basic-39-0.8.noarch fedora-repos-39-0.1.noarch fedora-repos-rawhide-39-0.1.noarch file-5.44-3.fc39.x86_64 file-libs-5.44-3.fc39.x86_64 filesystem-3.18-4.fc39.x86_64 findutils-1:4.9.0-3.fc38.x86_64 fonts-srpm-macros-1:2.0.5-11.fc38.noarch fpc-srpm-macros-1.3-7.fc38.noarch gawk-5.1.1-5.fc38.x86_64 gdb-minimal-13.1-4.fc39.x86_64 gdbm-libs-1:1.23-3.fc38.x86_64 ghc-srpm-macros-1.6.1-1.fc38.noarch glibc-2.37.9000-5.fc39.x86_64 glibc-common-2.37.9000-5.fc39.x86_64 glibc-gconv-extra-2.37.9000-5.fc39.x86_64 glibc-minimal-langpack-2.37.9000-5.fc39.x86_64 gmp-1:6.2.1-4.fc38.x86_64 gnat-srpm-macros-6-2.fc38.noarch go-srpm-macros-3.2.0-2.fc38.noarch grep-3.9-1.fc39.x86_64 gzip-1.12-3.fc38.x86_64 info-7.0.3-1.fc39.x86_64 jansson-2.13.1-6.fc38.x86_64 kernel-srpm-macros-1.0-16.fc38.noarch keyutils-libs-1.6.1-6.fc38.x86_64 krb5-libs-1.20.1-9.fc39.x86_64 libacl-2.3.1-7.fc39.x86_64 libarchive-3.6.1-5.fc39.x86_64 libattr-2.5.1-7.fc39.x86_64 libblkid-2.38.1-4.fc38.x86_64 libbrotli-1.0.9-11.fc38.x86_64 libcap-2.48-6.fc38.x86_64 libcap-ng-0.8.3-5.fc38.x86_64 libcom_err-1.46.5-4.fc38.x86_64 libcurl-8.0.1-2.fc39.x86_64 libdb-5.3.28-55.fc38.x86_64 libeconf-0.4.0-5.fc38.x86_64 libevent-2.1.12-8.fc38.x86_64 libfdisk-2.38.1-4.fc38.x86_64 libffi-3.4.4-2.fc38.x86_64 libgcc-13.0.1-0.12.fc39.x86_64 libgomp-13.0.1-0.12.fc39.x86_64 libidn2-2.3.4-2.fc38.x86_64 libmount-2.38.1-4.fc38.x86_64 libnghttp2-1.52.0-1.fc39.x86_64 libnsl2-2.0.0-5.fc38.x86_64 libpkgconf-1.9.4-1.fc39.x86_64 libpsl-0.21.2-2.fc38.x86_64 libpwquality-1.4.5-3.fc38.x86_64 libselinux-3.5-1.fc39.x86_64 libsemanage-3.5-2.fc39.x86_64 libsepol-3.5-1.fc39.x86_64 libsigsegv-2.14-4.fc38.x86_64 libsmartcols-2.38.1-4.fc38.x86_64 libssh-0.10.4-4.fc39.x86_64 libssh-config-0.10.4-4.fc39.noarch libstdc++-13.0.1-0.12.fc39.x86_64 libtasn1-4.19.0-2.fc38.x86_64 libtirpc-1.3.3-1.fc38.x86_64 libunistring1.0-1.0-1.fc38.x86_64 libutempter-1.2.1-9.fc39.x86_64 libuuid-2.38.1-4.fc38.x86_64 libverto-0.3.2-5.fc38.x86_64 libxcrypt-4.4.33-7.fc39.x86_64 libxml2-2.10.3-3.fc38.x86_64 libzstd-1.5.4-1.fc39.x86_64 lua-libs-5.4.4-9.fc39.x86_64 lua-srpm-macros-1-8.fc38.noarch lz4-libs-1.9.4-2.fc38.x86_64 mpfr-4.1.1-3.fc38.x86_64 ncurses-base-6.4-3.20230114.fc38.noarch ncurses-libs-6.4-3.20230114.fc38.x86_64 ocaml-srpm-macros-7-3.fc38.noarch openblas-srpm-macros-2-13.fc38.noarch openldap-2.6.4-1.fc39.x86_64 openssl-libs-1:3.0.8-2.fc39.x86_64 p11-kit-0.24.1-6.fc38.x86_64 p11-kit-trust-0.24.1-6.fc38.x86_64 package-notes-srpm-macros-0.5-7.fc38.noarch pam-1.5.2-17.fc39.x86_64 pam-libs-1.5.2-17.fc39.x86_64 patch-2.7.6-21.fc39.x86_64 pcre2-10.42-1.fc38.1.x86_64 pcre2-syntax-10.42-1.fc38.1.noarch perl-srpm-macros-1-48.fc38.noarch pkgconf-1.9.4-1.fc39.x86_64 pkgconf-m4-1.9.4-1.fc39.noarch pkgconf-pkg-config-1.9.4-1.fc39.x86_64 popt-1.19-2.fc38.x86_64 publicsuffix-list-dafsa-20230318-1.fc39.noarch pyproject-srpm-macros-1.6.3-1.fc39.noarch python-srpm-macros-3.11-10.fc39.noarch qt5-srpm-macros-5.15.8-2.fc38.noarch readline-8.2-3.fc38.x86_64 redhat-rpm-config-254-1.fc39.noarch rpm-4.18.1-1.fc39.x86_64 rpm-build-4.18.1-1.fc39.x86_64 rpm-build-libs-4.18.1-1.fc39.x86_64 rpm-libs-4.18.1-1.fc39.x86_64 rpm-sequoia-1.3.0-1.fc39.x86_64 rpmautospec-rpm-macros-0.3.5-1.fc38.noarch rust-srpm-macros-24-1.fc39.noarch sed-4.8-12.fc38.x86_64 setup-2.14.3-3.fc39.noarch shadow-utils-2:4.13-6.fc39.x86_64 sqlite-libs-3.41.2-1.fc39.x86_64 systemd-libs-253.2-1.fc39.x86_64 tar-2:1.34-8.fc39.x86_64 tzdata-2023c-1.fc39.noarch unzip-6.0-60.fc38.x86_64 util-linux-2.38.1-4.fc38.x86_64 util-linux-core-2.38.1-4.fc38.x86_64 which-2.21-39.fc39.x86_64 xxhash-libs-0.8.1-4.fc38.x86_64 xz-5.4.1-1.fc38.x86_64 xz-libs-5.4.1-1.fc38.x86_64 zip-3.0-36.fc38.x86_64 zlib-1.2.13-3.fc38.x86_64 zstd-1.5.4-1.fc39.x86_64 Complete! Finish: dnf install Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: gawk-5.1.1-5.fc38.x86_64 debugedit-5.0-7.fc38.x86_64 xxhash-libs-0.8.1-4.fc38.x86_64 libtasn1-4.19.0-2.fc38.x86_64 readline-8.2-3.fc38.x86_64 libarchive-3.6.1-5.fc39.x86_64 zlib-1.2.13-3.fc38.x86_64 fedora-release-identity-basic-39-0.8.noarch gnat-srpm-macros-6-2.fc38.noarch fedora-repos-39-0.1.noarch libsepol-3.5-1.fc39.x86_64 bzip2-libs-1.0.8-13.fc38.x86_64 libnsl2-2.0.0-5.fc38.x86_64 xz-libs-5.4.1-1.fc38.x86_64 elfutils-libs-0.189-1.fc39.x86_64 elfutils-debuginfod-client-0.189-1.fc39.x86_64 rpm-libs-4.18.1-1.fc39.x86_64 zip-3.0-36.fc38.x86_64 fedora-repos-rawhide-39-0.1.noarch libmount-2.38.1-4.fc38.x86_64 glibc-gconv-extra-2.37.9000-5.fc39.x86_64 libffi-3.4.4-2.fc38.x86_64 gdbm-libs-1.23-3.fc38.x86_64 openblas-srpm-macros-2-13.fc38.noarch ed-1.19-2.fc38.x86_64 libidn2-2.3.4-2.fc38.x86_64 xz-5.4.1-1.fc38.x86_64 pcre2-10.42-1.fc38.1.x86_64 unzip-6.0-60.fc38.x86_64 pam-1.5.2-17.fc39.x86_64 setup-2.14.3-3.fc39.noarch libevent-2.1.12-8.fc38.x86_64 libsigsegv-2.14-4.fc38.x86_64 libsemanage-3.5-2.fc39.x86_64 krb5-libs-1.20.1-9.fc39.x86_64 pkgconf-m4-1.9.4-1.fc39.noarch sed-4.8-12.fc38.x86_64 libgomp-13.0.1-0.12.fc39.x86_64 ansible-srpm-macros-1-9.1.fc38.noarch mpfr-4.1.1-3.fc38.x86_64 libcap-ng-0.8.3-5.fc38.x86_64 pyproject-srpm-macros-1.6.3-1.fc39.noarch findutils-4.9.0-3.fc38.x86_64 fonts-srpm-macros-2.0.5-11.fc38.noarch pam-libs-1.5.2-17.fc39.x86_64 tzdata-2023c-1.fc39.noarch libeconf-0.4.0-5.fc38.x86_64 rust-srpm-macros-24-1.fc39.noarch audit-libs-3.1-2.fc39.x86_64 lz4-libs-1.9.4-2.fc38.x86_64 qt5-srpm-macros-5.15.8-2.fc38.noarch ghc-srpm-macros-1.6.1-1.fc38.noarch filesystem-3.18-4.fc39.x86_64 ca-certificates-2023.2.60-2.fc38.noarch libselinux-3.5-1.fc39.x86_64 elfutils-0.189-1.fc39.x86_64 systemd-libs-253.2-1.fc39.x86_64 libtirpc-1.3.3-1.fc38.x86_64 libsmartcols-2.38.1-4.fc38.x86_64 openssl-libs-3.0.8-2.fc39.x86_64 curl-8.0.1-2.fc39.x86_64 libpkgconf-1.9.4-1.fc39.x86_64 libxml2-2.10.3-3.fc38.x86_64 authselect-libs-1.4.2-2.fc38.x86_64 libstdc++-13.0.1-0.12.fc39.x86_64 ocaml-srpm-macros-7-3.fc38.noarch libacl-2.3.1-7.fc39.x86_64 rpm-sequoia-1.3.0-1.fc39.x86_64 lua-libs-5.4.4-9.fc39.x86_64 libpwquality-1.4.5-3.fc38.x86_64 file-libs-5.44-3.fc39.x86_64 gpg-pubkey-18b8e74c-62f2920f libpsl-0.21.2-2.fc38.x86_64 libzstd-1.5.4-1.fc39.x86_64 cyrus-sasl-lib-2.1.28-9.fc38.x86_64 gpg-pubkey-eb10b464-6202d9c6 info-7.0.3-1.fc39.x86_64 libcom_err-1.46.5-4.fc38.x86_64 rpm-build-4.18.1-1.fc39.x86_64 libverto-0.3.2-5.fc38.x86_64 diffutils-3.9-4.fc39.x86_64 fedora-gpg-keys-39-0.1.noarch libssh-0.10.4-4.fc39.x86_64 coreutils-common-9.2-3.fc39.x86_64 binutils-2.40-5.fc39.x86_64 libssh-config-0.10.4-4.fc39.noarch binutils-gold-2.40-5.fc39.x86_64 libnghttp2-1.52.0-1.fc39.x86_64 elfutils-default-yama-scope-0.189-1.fc39.noarch tar-1.34-8.fc39.x86_64 ncurses-base-6.4-3.20230114.fc38.noarch jansson-2.13.1-6.fc38.x86_64 libbrotli-1.0.9-11.fc38.x86_64 shadow-utils-4.13-6.fc39.x86_64 util-linux-core-2.38.1-4.fc38.x86_64 lua-srpm-macros-1-8.fc38.noarch publicsuffix-list-dafsa-20230318-1.fc39.noarch keyutils-libs-1.6.1-6.fc38.x86_64 p11-kit-0.24.1-6.fc38.x86_64 elfutils-libelf-0.189-1.fc39.x86_64 glibc-2.37.9000-5.fc39.x86_64 zstd-1.5.4-1.fc39.x86_64 alternatives-1.22-1.fc39.x86_64 grep-3.9-1.fc39.x86_64 coreutils-9.2-3.fc39.x86_64 package-notes-srpm-macros-0.5-7.fc38.noarch libxcrypt-4.4.33-7.fc39.x86_64 pcre2-syntax-10.42-1.fc38.1.noarch crypto-policies-20230301-1.gita12f7b2.fc39.noarch cracklib-2.9.7-31.fc38.x86_64 rpm-4.18.1-1.fc39.x86_64 cpio-2.13-14.fc38.x86_64 openldap-2.6.4-1.fc39.x86_64 fpc-srpm-macros-1.3-7.fc38.noarch popt-1.19-2.fc38.x86_64 libgcc-13.0.1-0.12.fc39.x86_64 bzip2-1.0.8-13.fc38.x86_64 sqlite-libs-3.41.2-1.fc39.x86_64 util-linux-2.38.1-4.fc38.x86_64 libattr-2.5.1-7.fc39.x86_64 libutempter-1.2.1-9.fc39.x86_64 libblkid-2.38.1-4.fc38.x86_64 file-5.44-3.fc39.x86_64 perl-srpm-macros-1-48.fc38.noarch pkgconf-1.9.4-1.fc39.x86_64 patch-2.7.6-21.fc39.x86_64 redhat-rpm-config-254-1.fc39.noarch libcap-2.48-6.fc38.x86_64 pkgconf-pkg-config-1.9.4-1.fc39.x86_64 python-srpm-macros-3.11-10.fc39.noarch rpmautospec-rpm-macros-0.3.5-1.fc38.noarch basesystem-11-15.fc38.noarch libuuid-2.38.1-4.fc38.x86_64 libunistring1.0-1.0-1.fc38.x86_64 glibc-minimal-langpack-2.37.9000-5.fc39.x86_64 gzip-1.12-3.fc38.x86_64 rpm-build-libs-4.18.1-1.fc39.x86_64 go-srpm-macros-3.2.0-2.fc38.noarch libdb-5.3.28-55.fc38.x86_64 efi-srpm-macros-5-7.fc38.noarch fedora-release-39-0.8.noarch libfdisk-2.38.1-4.fc38.x86_64 authselect-1.4.2-2.fc38.x86_64 fedora-release-common-39-0.8.noarch bash-5.2.15-3.fc38.x86_64 ncurses-libs-6.4-3.20230114.fc38.x86_64 glibc-common-2.37.9000-5.fc39.x86_64 dwz-0.15-2.fc38.x86_64 kernel-srpm-macros-1.0-16.fc38.noarch gdb-minimal-13.1-4.fc39.x86_64 which-2.21-39.fc39.x86_64 libcurl-8.0.1-2.fc39.x86_64 p11-kit-trust-0.24.1-6.fc38.x86_64 gmp-6.2.1-4.fc38.x86_64 Start: buildsrpm Start: rpmbuild -bs Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1658275200 Wrote: /builddir/build/SRPMS/bout++-4.4.2-5.fc39.src.rpm Finish: rpmbuild -bs cp: ‘var/lib/mock/fedora-rawhide-x86_64-1680615527.303785/root/var/log’: No such file or directory INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-x86_64-1680615527.303785/root/var/log/dnf.rpm.log /var/lib/mock/fedora-rawhide-x86_64-1680615527.303785/root/var/log/dnf.librepo.log /var/lib/mock/fedora-rawhide-x86_64-1680615527.303785/root/var/log/dnf.log Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-d9blk9yn/bout++/bout++.spec) Config(child) 0 minutes 44 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running (timeout=18000): unbuffer mock --rebuild /var/lib/copr-rpmbuild/results/bout++-4.4.2-5.fc39.src.rpm --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1680615527.303785 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 3.5 starting (python version = 3.11.0, NVR = mock-3.5-1.fc37)... Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/results/bout++-4.4.2-5.fc39.src.rpm) Config(fedora-rawhide-x86_64) Start: clean chroot Finish: clean chroot Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1680615527.303785/root. INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1680615527.303785/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 3.5 INFO: Mock Version: 3.5 Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1680615527.303785/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 3.5 INFO: Mock Version: 3.5 Start: dnf update No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 114 kB/s | 3.3 kB 00:00 fedora 243 kB/s | 8.4 kB 00:00 Dependencies resolved. Nothing to do. Complete! Finish: dnf update Finish: chroot init Start: build phase for bout++-4.4.2-5.fc39.src.rpm Start: build setup for bout++-4.4.2-5.fc39.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1658275200 Wrote: /builddir/build/SRPMS/bout++-4.4.2-5.fc39.src.rpm No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 86 kB/s | 3.3 kB 00:00 fedora 30 kB/s | 8.4 kB 00:00 Dependencies resolved. =============================================================================================== Package Arch Version Repo Size =============================================================================================== Installing: autoconf noarch 2.71-5.fc38 fedora 733 k autoconf-archive noarch 2023.02.20-1.fc39 fedora 703 k automake noarch 1.16.5-12.fc39 fedora 696 k doxygen x86_64 2:1.9.6-7.fc39 fedora 4.8 M environment-modules x86_64 5.2.0-2.fc38 fedora 565 k fftw-devel x86_64 3.3.10-7.fc39 fedora 134 k flexiblas-devel x86_64 3.3.1-1.fc39 fedora 116 k gcc-c++ x86_64 13.0.1-0.12.fc39 fedora 13 M gettext-devel x86_64 0.21.1-3.fc39 fedora 221 k hdf5-devel x86_64 1.12.1-11.fc38 fedora 1.3 M hdf5-mpich-devel x86_64 1.12.1-11.fc38 fedora 1.3 M hdf5-openmpi-devel x86_64 1.12.1-11.fc38 fedora 1.3 M m4 x86_64 1.4.19-4.fc37 fedora 303 k make x86_64 1:4.4.1-1.fc39 fedora 589 k mpark-variant-devel x86_64 1.4.0-9.fc38 fedora 27 k mpich-devel x86_64 4.0.3-1.fc39 fedora 1.4 M netcdf-cxx4-devel x86_64 4.3.1-8.fc38 fedora 73 k netcdf-devel x86_64 4.9.0-5.fc38 fedora 99 k openmpi-devel x86_64 4.1.5-1.fc39 fedora 1.3 M petsc-mpich-devel x86_64 3.17.4-15.fc39 fedora 3.4 M petsc-openmpi-devel x86_64 3.17.4-15.fc39 fedora 6.4 M python3 x86_64 3.11.2-1.fc39 fedora 28 k python3-Cython x86_64 3.0.0~b2-1.fc39 copr_base 3.7 M python3-boutdata noarch 0.1.9-2.fc38 fedora 188 k python3-boututils noarch 0.1.9-3.fc38 fedora 171 k python3-devel x86_64 3.11.2-1.fc39 fedora 269 k python3-h5py-mpich x86_64 3.8.0-1.fc39 fedora 936 k python3-h5py-openmpi x86_64 3.8.0-1.fc39 fedora 936 k python3-jinja2 noarch 3.0.3-7.fc38 fedora 638 k python3-netcdf4 x86_64 1.6.3-1.fc39 fedora 564 k python3-numpy x86_64 1:1.24.1-3.fc39 fedora 7.8 M python3-scipy x86_64 1.10.1-2.fc39 fedora 21 M python3-sphinx noarch 1:5.3.0-4.fc39 fedora 2.7 M python3-tables x86_64 3.7.0-7.fc38 fedora 1.8 M sundials-devel x86_64 5.8.0-15.fc39 fedora 1.1 M sundials-mpich-devel x86_64 5.8.0-15.fc39 fedora 1.1 M sundials-openmpi-devel x86_64 5.8.0-15.fc39 fedora 1.1 M zlib-devel x86_64 1.2.13-3.fc38 fedora 45 k Installing dependencies: MUMPS-common noarch 5.5.1-3.fc39 fedora 830 k MUMPS-mpich x86_64 5.5.1-3.fc39 fedora 1.9 M MUMPS-openmpi x86_64 5.5.1-3.fc39 fedora 1.9 M SuperLUMT-common noarch 3.1.0-35.fc38 fedora 642 k SuperLUMT64-double x86_64 3.1.0-35.fc38 fedora 82 k adobe-mappings-cmap noarch 20230118-1.fc38 fedora 2.1 M adobe-mappings-cmap-deprecated noarch 20230118-1.fc38 fedora 113 k adobe-mappings-pdf noarch 20190401-3.fc38 fedora 698 k annobin-docs noarch 12.01-1.fc39 fedora 94 k annobin-plugin-gcc x86_64 12.01-1.fc39 fedora 896 k avahi-libs x86_64 0.8-20.fc38 fedora 67 k blosc x86_64 1.21.2-2.fc38 fedora 54 k cairo x86_64 1.17.8-3.fc39 fedora 703 k cairo-gobject x86_64 1.17.8-3.fc39 fedora 18 k cgnslib-libs x86_64 4.3.0-7.fc38 fedora 296 k clang-libs x86_64 15.0.7-2.fc38 fedora 21 M clang-resource-filesystem x86_64 15.0.7-2.fc38 fedora 13 k cmake-filesystem x86_64 3.26.2-1.fc39 fedora 17 k cpp x86_64 13.0.1-0.12.fc39 fedora 11 M crypto-policies-scripts noarch 20230301-1.gita12f7b2.fc39 fedora 116 k cryptsetup-libs x86_64 2.6.1-1.fc39 fedora 492 k cups-libs x86_64 1:2.4.2-11.fc39 fedora 265 k dbus x86_64 1:1.14.6-1.fc38 fedora 7.9 k dbus-broker x86_64 33-1.fc38 fedora 173 k dbus-common noarch 1:1.14.6-1.fc38 fedora 15 k dbus-libs x86_64 1:1.14.6-1.fc38 fedora 156 k dejavu-sans-fonts noarch 2.37-20.fc38 fedora 1.3 M device-mapper x86_64 1.02.193-2.fc39 fedora 137 k device-mapper-libs x86_64 1.02.193-2.fc39 fedora 175 k emacs-filesystem noarch 1:28.2-4.fc38 fedora 7.6 k expat x86_64 2.5.0-2.fc38 fedora 110 k fftw x86_64 3.3.10-7.fc39 fedora 45 k fftw-libs x86_64 3.3.10-7.fc39 fedora 7.6 k fftw-libs-double x86_64 3.3.10-7.fc39 fedora 1.2 M fftw-libs-long x86_64 3.3.10-7.fc39 fedora 505 k fftw-libs-quad x86_64 3.3.10-7.fc39 fedora 739 k fftw-libs-single x86_64 3.3.10-7.fc39 fedora 1.2 M flexiblas x86_64 3.3.1-1.fc39 fedora 32 k flexiblas-netlib x86_64 3.3.1-1.fc39 fedora 3.1 M flexiblas-netlib64 x86_64 3.3.1-1.fc39 fedora 3.0 M flexiblas-openblas-openmp x86_64 3.3.1-1.fc39 fedora 17 k flexiblas-openblas-openmp64 x86_64 3.3.1-1.fc39 fedora 17 k fontconfig x86_64 2.14.2-2.fc39 fedora 295 k fonts-filesystem noarch 1:2.0.5-11.fc38 fedora 8.1 k freetype x86_64 2.13.0-1.fc39 fedora 413 k fribidi x86_64 1.0.12-4.fc39 fedora 89 k gc x86_64 8.2.2-3.fc38 fedora 110 k gcc x86_64 13.0.1-0.12.fc39 fedora 34 M gcc-gfortran x86_64 13.0.1-0.12.fc39 fedora 12 M gcc-plugin-annobin x86_64 13.0.1-0.12.fc39 fedora 40 k gd x86_64 2.3.3-11.fc39 fedora 139 k gdk-pixbuf2 x86_64 2.42.10-2.fc38 fedora 485 k gettext x86_64 0.21.1-3.fc39 fedora 1.0 M gettext-common-devel noarch 0.21.1-3.fc39 fedora 409 k gettext-envsubst x86_64 0.21.1-3.fc39 fedora 37 k gettext-libs x86_64 0.21.1-3.fc39 fedora 325 k gettext-runtime x86_64 0.21.1-3.fc39 fedora 118 k glib2 x86_64 2.76.1-1.fc39 fedora 2.8 M glibc-devel x86_64 2.37.9000-5.fc39 fedora 62 k glibc-headers-x86 noarch 2.37.9000-5.fc39 fedora 542 k gnutls x86_64 3.8.0-3.fc39 fedora 1.1 M google-droid-sans-fonts noarch 20200215-14.fc38 fedora 2.7 M google-noto-fonts-common noarch 20230201-1.fc38 fedora 16 k google-noto-sans-vf-fonts noarch 20230201-1.fc38 fedora 580 k graphite2 x86_64 1.3.14-11.fc38 fedora 95 k graphviz x86_64 8.0.1-1.fc39 fedora 5.0 M groff-base x86_64 1.22.4-11.fc38 fedora 1.1 M gts x86_64 0.7.6-44.20121130.fc38 fedora 240 k guile22 x86_64 2.2.7-8.fc39 fedora 6.5 M harfbuzz x86_64 7.1.0-1.fc39 fedora 889 k hdf-libs x86_64 4.2.15-12.fc38 fedora 294 k hdf5 x86_64 1.12.1-11.fc38 fedora 2.2 M hdf5-mpich x86_64 1.12.1-11.fc38 fedora 2.1 M hdf5-openmpi x86_64 1.12.1-11.fc38 fedora 2.1 M highway x86_64 1.0.4-1.fc39 fedora 399 k hwloc-libs x86_64 2.9.0-6.fc39 fedora 2.2 M hypre-mpich x86_64 2.24.0-4.fc39 fedora 1.7 M hypre-openmpi x86_64 2.24.0-4.fc39 fedora 1.7 M infinipath-psm x86_64 3.3-26_g604758e_open.6.fc37.6 fedora 198 k jbig2dec-libs x86_64 0.19-8.fc38 fedora 73 k jbigkit-libs x86_64 2.1-25.fc38 fedora 53 k json-c x86_64 0.16-4.fc38 fedora 41 k kbd x86_64 2.5.1-5.fc39 fedora 429 k kbd-legacy noarch 2.5.1-5.fc39 fedora 550 k kbd-misc noarch 2.5.1-5.fc39 fedora 1.6 M kernel-headers x86_64 6.3.0-0.rc5.git0.1.fc39 fedora 1.5 M kmod x86_64 30-4.fc38 fedora 120 k kmod-libs x86_64 30-4.fc38 fedora 68 k langpacks-core-font-en noarch 3.0-31.fc38 fedora 10 k lasi x86_64 1.1.3-10.fc38 fedora 53 k lcms2 x86_64 2.15-1.fc39 fedora 177 k less x86_64 608-2.fc38 fedora 168 k libICE x86_64 1.0.10-10.fc38 fedora 71 k libSM x86_64 1.2.3-12.fc38 fedora 41 k libX11 x86_64 1.8.4-1.fc38 fedora 649 k libX11-common noarch 1.8.4-1.fc38 fedora 177 k libXau x86_64 1.0.11-2.fc38 fedora 32 k libXext x86_64 1.3.5-2.fc38 fedora 39 k libXft x86_64 2.3.6-2.fc38 fedora 71 k libXpm x86_64 3.5.15-3.fc38 fedora 63 k libXrender x86_64 0.9.11-2.fc38 fedora 27 k libXt x86_64 1.2.1-4.fc38 fedora 179 k libaec x86_64 1.0.6-4.fc38 fedora 42 k libaec-devel x86_64 1.0.6-4.fc38 fedora 12 k libaom x86_64 3.6.0-1.fc39 fedora 1.8 M libargon2 x86_64 20190702-2.fc38 fedora 28 k libavif x86_64 0.11.1-9.fc39 fedora 84 k libb2 x86_64 0.98.1-8.fc38 fedora 25 k libcbor x86_64 0.10.2-1.fc39 fedora 58 k libcurl-devel x86_64 8.0.1-2.fc39 fedora 988 k libdatrie x86_64 0.2.13-5.fc38 fedora 32 k libdav1d x86_64 1.1.0-1.fc39 fedora 606 k libedit x86_64 3.1-45.20221030cvs.fc38 fedora 107 k libfabric x86_64 1.17.1-1.fc39 fedora 1.6 M libfido2 x86_64 1.13.0-2.fc39 fedora 98 k libfontenc x86_64 1.1.6-2.fc38 fedora 32 k libgfortran x86_64 13.0.1-0.12.fc39 fedora 892 k libgs x86_64 10.01.0-1.fc39 fedora 3.5 M libibumad x86_64 44.0-3.fc38 fedora 27 k libibverbs x86_64 44.0-3.fc38 fedora 429 k libijs x86_64 0.35-17.fc38 fedora 29 k libimagequant x86_64 4.0.1-4.fc39 fedora 302 k libjpeg-turbo x86_64 2.1.4-2.fc38 fedora 183 k libjxl x86_64 1:0.7.0-6.fc38 fedora 1.0 M liblzf x86_64 3.6-25.fc38 fedora 28 k libmpc x86_64 1.3.1-2.fc38 fedora 70 k libnl3 x86_64 3.7.0-3.fc38 fedora 345 k libpaper x86_64 1:2.0.10-1.fc39 fedora 26 k libpipeline x86_64 1.5.7-2.fc38 fedora 52 k libpng x86_64 2:1.6.37-14.fc38 fedora 120 k libpsm2 x86_64 11.2.230-1.fc38 fedora 201 k libqhull_r x86_64 1:7.2.1-12.fc38 fedora 167 k libquadmath x86_64 13.0.1-0.12.fc39 fedora 189 k libquadmath-devel x86_64 13.0.1-0.12.fc39 fedora 30 k libraqm x86_64 0.8.0-4.fc38 fedora 20 k librdmacm x86_64 44.0-3.fc38 fedora 72 k librsvg2 x86_64 2.56.0-1.fc39 fedora 3.0 M libseccomp x86_64 2.5.3-4.fc38 fedora 71 k libstdc++-devel x86_64 13.0.1-0.12.fc39 fedora 2.6 M libthai x86_64 0.1.29-4.fc38 fedora 213 k libtiff x86_64 4.4.0-5.fc38 fedora 197 k libtool-ltdl x86_64 2.4.7-6.fc38 fedora 37 k libunistring x86_64 1.1-3.fc38 fedora 545 k libvmaf x86_64 2.3.0-5.fc38 fedora 180 k libwebp x86_64 1.3.0-2.fc38 fedora 282 k libxcb x86_64 1.13.1-11.fc38 fedora 231 k libxcrypt-devel x86_64 4.4.33-7.fc39 fedora 30 k libxslt x86_64 1.1.37-3.fc39 fedora 184 k llvm-libs x86_64 15.0.7-2.fc38 fedora 25 M lzo x86_64 2.10-8.fc38 fedora 66 k man-db x86_64 2.11.2-2.fc38 fedora 1.3 M metis x86_64 5.1.0-34.fc38 fedora 573 k mkfontscale x86_64 1.2.2-3.fc38 fedora 32 k mpdecimal x86_64 2.5.1-6.fc38 fedora 89 k mpi4py-common noarch 3.1.4-3.fc39 fedora 18 k mpich x86_64 4.0.3-1.fc39 fedora 1.7 M munge-libs x86_64 0.5.15-4.fc38 fedora 21 k ncurses x86_64 6.4-3.20230114.fc38 fedora 412 k netcdf x86_64 4.9.0-5.fc38 fedora 833 k netcdf-cxx4 x86_64 4.3.1-8.fc38 fedora 88 k netpbm x86_64 11.02.00-1.fc39 fedora 185 k nettle x86_64 3.8-3.fc38 fedora 412 k nspr x86_64 4.35.0-5.fc39 fedora 136 k nss x86_64 3.88.1-2.fc39 fedora 691 k nss-softokn x86_64 3.88.1-2.fc39 fedora 1.0 M nss-softokn-freebl x86_64 3.88.1-2.fc39 fedora 325 k nss-sysinit x86_64 3.88.1-2.fc39 fedora 18 k nss-util x86_64 3.88.1-2.fc39 fedora 86 k numactl-libs x86_64 2.0.16-2.fc38 fedora 31 k openblas x86_64 0.3.21-4.fc38 fedora 35 k openblas-openmp x86_64 0.3.21-4.fc38 fedora 5.1 M openblas-openmp64 x86_64 0.3.21-4.fc38 fedora 4.9 M openjpeg2 x86_64 2.5.0-3.fc38 fedora 178 k openmpi x86_64 4.1.5-1.fc39 fedora 2.7 M opensm-libs x86_64 3.3.24-5.fc38 fedora 73 k openssh x86_64 9.0p1-14.fc39.1 fedora 434 k openssh-clients x86_64 9.0p1-14.fc39.1 fedora 699 k orangefs x86_64 2.9.8-8.fc38 fedora 1.8 M pango x86_64 1.50.14-1.fc39 fedora 342 k perl-B x86_64 1.83-495.fc38 fedora 184 k perl-Carp noarch 1.52-490.fc38 fedora 29 k perl-Class-Struct noarch 0.66-495.fc38 fedora 24 k perl-Data-Dumper x86_64 2.184-491.fc38 fedora 56 k perl-DynaLoader x86_64 1.52-495.fc38 fedora 28 k perl-Encode x86_64 4:3.19-493.fc38 fedora 1.7 M perl-Errno x86_64 1.36-495.fc38 fedora 17 k perl-Exporter noarch 5.77-490.fc38 fedora 31 k perl-Fcntl x86_64 1.15-495.fc38 fedora 23 k perl-File-Basename noarch 2.85-495.fc38 fedora 19 k perl-File-Compare noarch 1.100.700-495.fc38 fedora 15 k perl-File-Copy noarch 2.39-495.fc38 fedora 22 k perl-File-Find noarch 1.40-495.fc38 fedora 27 k perl-File-Path noarch 2.18-490.fc38 fedora 35 k perl-File-Temp noarch 1:0.231.100-490.fc38 fedora 59 k perl-File-stat noarch 1.12-495.fc38 fedora 19 k perl-Getopt-Long noarch 1:2.54-2.fc38 fedora 60 k perl-Getopt-Std noarch 1.13-495.fc38 fedora 18 k perl-HTTP-Tiny noarch 0.082-2.fc38 fedora 55 k perl-IO x86_64 1.50-495.fc38 fedora 94 k perl-IPC-Open3 noarch 1.22-495.fc38 fedora 25 k perl-MIME-Base64 x86_64 3.16-490.fc38 fedora 30 k perl-POSIX x86_64 2.03-495.fc38 fedora 100 k perl-PathTools x86_64 3.84-490.fc38 fedora 87 k perl-Pod-Escapes noarch 1:1.07-490.fc38 fedora 20 k perl-Pod-Perldoc noarch 3.28.01-491.fc38 fedora 86 k perl-Pod-Simple noarch 1:3.43-491.fc38 fedora 219 k perl-Pod-Usage noarch 4:2.03-4.fc38 fedora 40 k perl-Scalar-List-Utils x86_64 5:1.63-490.fc38 fedora 72 k perl-SelectSaver noarch 1.02-495.fc38 fedora 14 k perl-Socket x86_64 4:2.036-2.fc38 fedora 55 k perl-Storable x86_64 1:3.26-490.fc38 fedora 97 k perl-Symbol noarch 1.09-495.fc38 fedora 16 k perl-Term-ANSIColor noarch 5.01-491.fc38 fedora 47 k perl-Term-Cap noarch 1.18-1.fc39 fedora 22 k perl-Text-ParseWords noarch 3.31-490.fc38 fedora 16 k perl-Text-Tabs+Wrap noarch 2021.0814-490.fc38 fedora 22 k perl-Thread-Queue noarch 3.14-490.fc38 fedora 21 k perl-Time-Local noarch 2:1.300-490.fc38 fedora 33 k perl-constant noarch 1.33-491.fc38 fedora 23 k perl-if noarch 0.61.000-495.fc38 fedora 16 k perl-interpreter x86_64 4:5.36.0-495.fc38 fedora 74 k perl-libs x86_64 4:5.36.0-495.fc38 fedora 2.2 M perl-mro x86_64 1.26-495.fc38 fedora 31 k perl-overload noarch 1.35-495.fc38 fedora 48 k perl-overloading noarch 0.02-495.fc38 fedora 15 k perl-parent noarch 1:0.241-1.fc39 fedora 14 k perl-podlators noarch 1:5.01-2.fc38 fedora 125 k perl-threads x86_64 1:2.27-490.fc38 fedora 57 k perl-threads-shared x86_64 1.64-490.fc38 fedora 44 k perl-vars noarch 1.05-495.fc38 fedora 15 k petsc-mpich x86_64 3.17.4-15.fc39 fedora 6.7 M petsc-openmpi x86_64 3.17.4-15.fc39 fedora 7.0 M pixman x86_64 0.42.2-1.fc39 fedora 284 k pmix x86_64 4.1.2-4.fc38 fedora 633 k poppler x86_64 23.02.0-1.fc38 fedora 1.2 M poppler-data noarch 0.4.11-4.fc38 fedora 2.0 M poppler-glib x86_64 23.02.0-1.fc38 fedora 177 k procps-ng x86_64 3.3.17-9.fc38 fedora 339 k ptscotch-mpich x86_64 6.1.2-3.fc37 fedora 546 k ptscotch-openmpi x86_64 6.1.2-3.fc37 fedora 547 k pyproject-rpm-macros noarch 1.6.3-1.fc39 fedora 41 k python-pip-wheel noarch 23.0.1-2.fc39 fedora 1.4 M python-rpm-macros noarch 3.11-10.fc39 fedora 20 k python-setuptools-wheel noarch 65.5.1-2.fc38 fedora 715 k python3-appdirs noarch 1.4.4-8.fc38 fedora 23 k python3-babel noarch 2.12.1-1.fc39 fedora 6.9 M python3-brotli x86_64 1.0.9-11.fc38 fedora 320 k python3-cached_property noarch 1.5.2-9.fc38 fedora 20 k python3-cairo x86_64 1.23.0-2.fc38 fedora 125 k python3-cftime x86_64 1.6.1-2.fc38 fedora 185 k python3-charset-normalizer noarch 3.1.0-1.fc39 fedora 107 k python3-contourpy x86_64 1.0.7-2.fc38 fedora 237 k python3-cycler noarch 0.11.0-7.fc38 fedora 21 k python3-dateutil noarch 1:2.8.2-6.fc39 fedora 360 k python3-docutils noarch 0.19-2.fc38 fedora 1.1 M python3-fonttools x86_64 4.39.3-1.fc39 fedora 2.8 M python3-fs noarch 2.4.16-1.fc39 fedora 312 k python3-idna noarch 3.4-2.fc38 fedora 110 k python3-imagesize noarch 1.4.1-2.fc38 fedora 22 k python3-kiwisolver x86_64 1.4.4-7.fc38 fedora 66 k python3-libs x86_64 3.11.2-1.fc39 fedora 9.6 M python3-lxml x86_64 4.9.2-2.fc38 fedora 1.3 M python3-markupsafe x86_64 2.1.2-1.fc38 fedora 30 k python3-matplotlib x86_64 3.7.1-1.fc39 fedora 4.3 M python3-matplotlib-data noarch 3.7.1-1.fc39 fedora 543 k python3-matplotlib-data-fonts noarch 3.7.1-1.fc39 fedora 2.3 M python3-matplotlib-tk x86_64 3.7.1-1.fc39 fedora 53 k python3-mpi4py-mpich x86_64 3.1.4-3.fc39 fedora 550 k python3-mpi4py-openmpi x86_64 3.1.4-3.fc39 fedora 552 k python3-mpich x86_64 4.0.3-1.fc39 fedora 8.8 k python3-mpmath noarch 1.3.0-1.fc39 fedora 1.1 M python3-munkres noarch 1.1.2-14.fc38 fedora 26 k python3-numexpr x86_64 2.8.4-1.fc38 fedora 168 k python3-numpy-f2py x86_64 1:1.24.1-3.fc39 fedora 498 k python3-olefile noarch 0.46-19.fc38 fedora 67 k python3-openmpi x86_64 4.1.5-1.fc39 fedora 8.9 k python3-packaging noarch 23.0-1.fc38 fedora 106 k python3-pillow x86_64 9.5.0-1.fc39 fedora 931 k python3-pillow-tk x86_64 9.5.0-1.fc39 fedora 30 k python3-pygments noarch 2.14.0-1.fc39 fedora 2.5 M python3-pyparsing noarch 3.0.9-3.fc38 fedora 262 k python3-pysocks noarch 1.7.1-17.fc39 fedora 40 k python3-requests noarch 2.28.2-1.fc38 fedora 155 k python3-rpm-generators noarch 14-3.fc39 fedora 30 k python3-rpm-macros noarch 3.11-10.fc39 fedora 15 k python3-setuptools noarch 65.5.1-2.fc38 fedora 1.7 M python3-six noarch 1.16.0-9.fc38 fedora 42 k python3-snowballstemmer noarch 2.2.0-5.fc38 fedora 258 k python3-sphinx-theme-alabaster noarch 0.7.12-17.fc38 fedora 29 k python3-sphinxcontrib-applehelp noarch 1.0.2-11.fc38 fedora 49 k python3-sphinxcontrib-devhelp noarch 1.0.2-11.fc38 fedora 42 k python3-sphinxcontrib-htmlhelp noarch 2.0.0-8.fc38 fedora 59 k python3-sphinxcontrib-jsmath noarch 1.0.1-19.fc38 fedora 18 k python3-sphinxcontrib-qthelp noarch 1.0.3-12.fc38 fedora 48 k python3-sphinxcontrib-serializinghtml noarch 1.1.5-7.fc38 fedora 48 k python3-sympy x86_64 1.11.1-4.fc39 fedora 18 M python3-tkinter x86_64 3.11.2-1.fc39 fedora 417 k python3-urllib3 noarch 1.26.12-2.fc38 fedora 252 k rav1e-libs x86_64 0.5.1-9.fc39 fedora 890 k rpm-mpi-hooks noarch 8-5.fc38 fedora 11 k scalapack-common x86_64 2.2.0-4.fc39 fedora 18 k scalapack-mpich x86_64 2.2.0-4.fc39 fedora 1.7 M scalapack-openmpi x86_64 2.2.0-4.fc39 fedora 1.7 M scotch x86_64 6.1.2-3.fc37 fedora 397 k shared-mime-info x86_64 2.2-3.fc38 fedora 381 k snappy x86_64 1.1.10-1.fc39 fedora 37 k suitesparse x86_64 5.13.0-2.fc38 fedora 1.1 M suitesparse64 x86_64 5.13.0-2.fc38 fedora 1.1 M sundials x86_64 5.8.0-15.fc39 fedora 1.0 M sundials-mpich x86_64 5.8.0-15.fc39 fedora 1.1 M sundials-openmpi x86_64 5.8.0-15.fc39 fedora 1.1 M superlu_dist-mpich x86_64 1:8.1.1-3.fc39 fedora 491 k superlu_dist-openmpi x86_64 1:8.1.1-3.fc39 fedora 494 k svt-av1-libs x86_64 1.4.1-2.fc38 fedora 2.0 M systemd x86_64 253.2-1.fc39 fedora 4.5 M systemd-pam x86_64 253.2-1.fc39 fedora 349 k systemd-rpm-macros noarch 253.2-1.fc39 fedora 31 k systemd-udev x86_64 253.2-1.fc39 fedora 2.1 M tcl x86_64 1:8.6.12-4.fc38 fedora 1.1 M tcsh x86_64 6.24.07-2.fc38 fedora 461 k tk x86_64 1:8.6.12-4.fc38 fedora 1.6 M ucx x86_64 1.13.1-4.fc39 fedora 742 k urw-base35-bookman-fonts noarch 20200910-16.fc38 fedora 848 k urw-base35-c059-fonts noarch 20200910-16.fc38 fedora 875 k urw-base35-d050000l-fonts noarch 20200910-16.fc38 fedora 76 k urw-base35-fonts noarch 20200910-16.fc38 fedora 11 k urw-base35-fonts-common noarch 20200910-16.fc38 fedora 21 k urw-base35-gothic-fonts noarch 20200910-16.fc38 fedora 643 k urw-base35-nimbus-mono-ps-fonts noarch 20200910-16.fc38 fedora 796 k urw-base35-nimbus-roman-fonts noarch 20200910-16.fc38 fedora 857 k urw-base35-nimbus-sans-fonts noarch 20200910-16.fc38 fedora 1.3 M urw-base35-p052-fonts noarch 20200910-16.fc38 fedora 974 k urw-base35-standard-symbols-ps-fonts noarch 20200910-16.fc38 fedora 42 k urw-base35-z003-fonts noarch 20200910-16.fc38 fedora 276 k vim-filesystem noarch 2:9.0.1429-1.fc39 fedora 18 k xapian-core-libs x86_64 1.4.20-3.fc39 fedora 757 k xml-common noarch 0.6.3-60.fc38 fedora 31 k xorg-x11-fonts-ISO8859-1-100dpi noarch 7.5-35.fc38 fedora 1.1 M Transaction Summary =============================================================================================== Install 376 Packages Total size: 418 M Total download size: 274 M Installed size: 1.6 G Downloading Packages: [SKIPPED] python3-Cython-3.0.0~b2-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] annobin-docs-12.01-1.fc39.noarch.rpm: Already downloaded [SKIPPED] annobin-plugin-gcc-12.01-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] autoconf-2.71-5.fc38.noarch.rpm: Already downloaded [SKIPPED] automake-1.16.5-12.fc39.noarch.rpm: Already downloaded [SKIPPED] cmake-filesystem-3.26.2-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] cpp-13.0.1-0.12.fc39.x86_64.rpm: Already downloaded [SKIPPED] cryptsetup-libs-2.6.1-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] dbus-1.14.6-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] dbus-broker-33-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] dbus-common-1.14.6-1.fc38.noarch.rpm: Already downloaded [SKIPPED] device-mapper-1.02.193-2.fc39.x86_64.rpm: Already downloaded [SKIPPED] device-mapper-libs-1.02.193-2.fc39.x86_64.rpm: Already downloaded [SKIPPED] emacs-filesystem-28.2-4.fc38.noarch.rpm: Already downloaded [SKIPPED] expat-2.5.0-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] gc-8.2.2-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] gcc-13.0.1-0.12.fc39.x86_64.rpm: Already downloaded [SKIPPED] gcc-c++-13.0.1-0.12.fc39.x86_64.rpm: Already downloaded [SKIPPED] gcc-gfortran-13.0.1-0.12.fc39.x86_64.rpm: Already downloaded [SKIPPED] gcc-plugin-annobin-13.0.1-0.12.fc39.x86_64.rpm: Already downloaded [SKIPPED] glibc-devel-2.37.9000-5.fc39.x86_64.rpm: Already downloaded [SKIPPED] glibc-headers-x86-2.37.9000-5.fc39.noarch.rpm: Already downloaded [SKIPPED] groff-base-1.22.4-11.fc38.x86_64.rpm: Already downloaded [SKIPPED] guile22-2.2.7-8.fc39.x86_64.rpm: Already downloaded [SKIPPED] hwloc-libs-2.9.0-6.fc39.x86_64.rpm: Already downloaded [SKIPPED] infinipath-psm-3.3-26_g604758e_open.6.fc37.6.x86_64.rpm: Already downloaded [SKIPPED] json-c-0.16-4.fc38.x86_64.rpm: Already downloaded [SKIPPED] kbd-2.5.1-5.fc39.x86_64.rpm: Already downloaded [SKIPPED] kbd-legacy-2.5.1-5.fc39.noarch.rpm: Already downloaded [SKIPPED] kbd-misc-2.5.1-5.fc39.noarch.rpm: Already downloaded [SKIPPED] kernel-headers-6.3.0-0.rc5.git0.1.fc39.x86_64.rpm: Already downloaded [SKIPPED] kmod-30-4.fc38.x86_64.rpm: Already downloaded [SKIPPED] kmod-libs-30-4.fc38.x86_64.rpm: Already downloaded [SKIPPED] libX11-1.8.4-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] libX11-common-1.8.4-1.fc38.noarch.rpm: Already downloaded [SKIPPED] libXau-1.0.11-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] libXext-1.3.5-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] libargon2-20190702-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] libb2-0.98.1-8.fc38.x86_64.rpm: Already downloaded [SKIPPED] libcbor-0.10.2-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] libedit-3.1-45.20221030cvs.fc38.x86_64.rpm: Already downloaded [SKIPPED] libfabric-1.17.1-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] libfido2-1.13.0-2.fc39.x86_64.rpm: Already downloaded [SKIPPED] libgfortran-13.0.1-0.12.fc39.x86_64.rpm: Already downloaded [SKIPPED] libibumad-44.0-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] libibverbs-44.0-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] libmpc-1.3.1-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] libnl3-3.7.0-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] libpsm2-11.2.230-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] libquadmath-13.0.1-0.12.fc39.x86_64.rpm: Already downloaded [SKIPPED] libquadmath-devel-13.0.1-0.12.fc39.x86_64.rpm: Already downloaded [SKIPPED] librdmacm-44.0-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] libseccomp-2.5.3-4.fc38.x86_64.rpm: Already downloaded [SKIPPED] libstdc++-devel-13.0.1-0.12.fc39.x86_64.rpm: Already downloaded [SKIPPED] libtool-ltdl-2.4.7-6.fc38.x86_64.rpm: Already downloaded [SKIPPED] libunistring-1.1-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] libxcb-1.13.1-11.fc38.x86_64.rpm: Already downloaded [SKIPPED] libxcrypt-devel-4.4.33-7.fc39.x86_64.rpm: Already downloaded [SKIPPED] m4-1.4.19-4.fc37.x86_64.rpm: Already downloaded [SKIPPED] make-4.4.1-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] mpdecimal-2.5.1-6.fc38.x86_64.rpm: Already downloaded [SKIPPED] mpi4py-common-3.1.4-3.fc39.noarch.rpm: Already downloaded [SKIPPED] mpich-4.0.3-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] mpich-devel-4.0.3-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] munge-libs-0.5.15-4.fc38.x86_64.rpm: Already downloaded [SKIPPED] ncurses-6.4-3.20230114.fc38.x86_64.rpm: Already downloaded [SKIPPED] numactl-libs-2.0.16-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] openmpi-4.1.5-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] openmpi-devel-4.1.5-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] opensm-libs-3.3.24-5.fc38.x86_64.rpm: Already downloaded [SKIPPED] openssh-9.0p1-14.fc39.1.x86_64.rpm: Already downloaded [SKIPPED] openssh-clients-9.0p1-14.fc39.1.x86_64.rpm: Already downloaded [SKIPPED] orangefs-2.9.8-8.fc38.x86_64.rpm: Already downloaded [SKIPPED] perl-B-1.83-495.fc38.x86_64.rpm: Already downloaded [SKIPPED] perl-Carp-1.52-490.fc38.noarch.rpm: Already downloaded [SKIPPED] perl-Class-Struct-0.66-495.fc38.noarch.rpm: Already downloaded [SKIPPED] perl-Data-Dumper-2.184-491.fc38.x86_64.rpm: Already downloaded [SKIPPED] perl-DynaLoader-1.52-495.fc38.x86_64.rpm: Already downloaded [SKIPPED] perl-Encode-3.19-493.fc38.x86_64.rpm: Already downloaded [SKIPPED] perl-Errno-1.36-495.fc38.x86_64.rpm: Already downloaded [SKIPPED] perl-Exporter-5.77-490.fc38.noarch.rpm: Already downloaded [SKIPPED] perl-Fcntl-1.15-495.fc38.x86_64.rpm: Already downloaded [SKIPPED] perl-File-Basename-2.85-495.fc38.noarch.rpm: Already downloaded [SKIPPED] perl-File-Compare-1.100.700-495.fc38.noarch.rpm: Already downloaded [SKIPPED] perl-File-Copy-2.39-495.fc38.noarch.rpm: Already downloaded [SKIPPED] perl-File-Find-1.40-495.fc38.noarch.rpm: Already downloaded [SKIPPED] perl-File-Path-2.18-490.fc38.noarch.rpm: Already downloaded [SKIPPED] perl-File-Temp-0.231.100-490.fc38.noarch.rpm: Already downloaded [SKIPPED] perl-File-stat-1.12-495.fc38.noarch.rpm: Already downloaded [SKIPPED] perl-Getopt-Long-2.54-2.fc38.noarch.rpm: Already downloaded [SKIPPED] perl-Getopt-Std-1.13-495.fc38.noarch.rpm: Already downloaded [SKIPPED] perl-HTTP-Tiny-0.082-2.fc38.noarch.rpm: Already downloaded [SKIPPED] perl-IO-1.50-495.fc38.x86_64.rpm: Already downloaded [SKIPPED] perl-IPC-Open3-1.22-495.fc38.noarch.rpm: Already downloaded [SKIPPED] perl-MIME-Base64-3.16-490.fc38.x86_64.rpm: Already downloaded [SKIPPED] perl-POSIX-2.03-495.fc38.x86_64.rpm: Already downloaded [SKIPPED] perl-PathTools-3.84-490.fc38.x86_64.rpm: Already downloaded [SKIPPED] perl-Pod-Escapes-1.07-490.fc38.noarch.rpm: Already downloaded [SKIPPED] perl-Pod-Perldoc-3.28.01-491.fc38.noarch.rpm: Already downloaded [SKIPPED] perl-Pod-Simple-3.43-491.fc38.noarch.rpm: Already downloaded [SKIPPED] perl-Pod-Usage-2.03-4.fc38.noarch.rpm: Already downloaded [SKIPPED] perl-Scalar-List-Utils-1.63-490.fc38.x86_64.rpm: Already downloaded [SKIPPED] perl-SelectSaver-1.02-495.fc38.noarch.rpm: Already downloaded [SKIPPED] perl-Socket-2.036-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] perl-Storable-3.26-490.fc38.x86_64.rpm: Already downloaded [SKIPPED] perl-Symbol-1.09-495.fc38.noarch.rpm: Already downloaded [SKIPPED] perl-Term-ANSIColor-5.01-491.fc38.noarch.rpm: Already downloaded [SKIPPED] perl-Term-Cap-1.18-1.fc39.noarch.rpm: Already downloaded [SKIPPED] perl-Text-ParseWords-3.31-490.fc38.noarch.rpm: Already downloaded [SKIPPED] perl-Text-Tabs+Wrap-2021.0814-490.fc38.noarch.rpm: Already downloaded [SKIPPED] perl-Thread-Queue-3.14-490.fc38.noarch.rpm: Already downloaded [SKIPPED] perl-Time-Local-1.300-490.fc38.noarch.rpm: Already downloaded [SKIPPED] perl-constant-1.33-491.fc38.noarch.rpm: Already downloaded [SKIPPED] perl-if-0.61.000-495.fc38.noarch.rpm: Already downloaded [SKIPPED] perl-interpreter-5.36.0-495.fc38.x86_64.rpm: Already downloaded [SKIPPED] perl-libs-5.36.0-495.fc38.x86_64.rpm: Already downloaded [SKIPPED] perl-mro-1.26-495.fc38.x86_64.rpm: Already downloaded [SKIPPED] perl-overload-1.35-495.fc38.noarch.rpm: Already downloaded [SKIPPED] perl-overloading-0.02-495.fc38.noarch.rpm: Already downloaded [SKIPPED] perl-parent-0.241-1.fc39.noarch.rpm: Already downloaded [SKIPPED] perl-podlators-5.01-2.fc38.noarch.rpm: Already downloaded [SKIPPED] perl-threads-2.27-490.fc38.x86_64.rpm: Already downloaded [SKIPPED] perl-threads-shared-1.64-490.fc38.x86_64.rpm: Already downloaded [SKIPPED] perl-vars-1.05-495.fc38.noarch.rpm: Already downloaded [SKIPPED] pmix-4.1.2-4.fc38.x86_64.rpm: Already downloaded [SKIPPED] procps-ng-3.3.17-9.fc38.x86_64.rpm: Already downloaded [SKIPPED] pyproject-rpm-macros-1.6.3-1.fc39.noarch.rpm: Already downloaded [SKIPPED] python-pip-wheel-23.0.1-2.fc39.noarch.rpm: Already downloaded [SKIPPED] python-rpm-macros-3.11-10.fc39.noarch.rpm: Already downloaded [SKIPPED] python-setuptools-wheel-65.5.1-2.fc38.noarch.rpm: Already downloaded [SKIPPED] python3-3.11.2-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] python3-devel-3.11.2-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] python3-libs-3.11.2-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] python3-mpi4py-mpich-3.1.4-3.fc39.x86_64.rpm: Already downloaded [SKIPPED] python3-mpi4py-openmpi-3.1.4-3.fc39.x86_64.rpm: Already downloaded [SKIPPED] python3-mpich-4.0.3-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] python3-openmpi-4.1.5-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] python3-packaging-23.0-1.fc38.noarch.rpm: Already downloaded [SKIPPED] python3-rpm-generators-14-3.fc39.noarch.rpm: Already downloaded [SKIPPED] python3-rpm-macros-3.11-10.fc39.noarch.rpm: Already downloaded [SKIPPED] python3-setuptools-65.5.1-2.fc38.noarch.rpm: Already downloaded [SKIPPED] rpm-mpi-hooks-8-5.fc38.noarch.rpm: Already downloaded [SKIPPED] systemd-253.2-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] systemd-pam-253.2-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] systemd-rpm-macros-253.2-1.fc39.noarch.rpm: Already downloaded [SKIPPED] systemd-udev-253.2-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] tcl-8.6.12-4.fc38.x86_64.rpm: Already downloaded [SKIPPED] tcsh-6.24.07-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] ucx-1.13.1-4.fc39.x86_64.rpm: Already downloaded (150/376): MUMPS-common-5.5.1-3.fc39.noarch.rpm 13 MB/s | 830 kB 00:00 (151/376): SuperLUMT-common-3.1.0-35.fc38.noarc 26 MB/s | 642 kB 00:00 (152/376): MUMPS-openmpi-5.5.1-3.fc39.x86_64.rp 21 MB/s | 1.9 MB 00:00 (153/376): MUMPS-mpich-5.5.1-3.fc39.x86_64.rpm 18 MB/s | 1.9 MB 00:00 (154/376): SuperLUMT64-double-3.1.0-35.fc38.x86 3.7 MB/s | 82 kB 00:00 (155/376): adobe-mappings-cmap-20230118-1.fc38. 94 MB/s | 2.1 MB 00:00 (156/376): adobe-mappings-cmap-deprecated-20230 14 MB/s | 113 kB 00:00 (157/376): avahi-libs-0.8-20.fc38.x86_64.rpm 15 MB/s | 67 kB 00:00 (158/376): adobe-mappings-pdf-20190401-3.fc38.n 56 MB/s | 698 kB 00:00 (159/376): cairo-1.17.8-3.fc39.x86_64.rpm 160 MB/s | 703 kB 00:00 (160/376): cairo-gobject-1.17.8-3.fc39.x86_64.r 14 MB/s | 18 kB 00:00 (161/376): blosc-1.21.2-2.fc38.x86_64.rpm 4.5 MB/s | 54 kB 00:00 (162/376): cgnslib-libs-4.3.0-7.fc38.x86_64.rpm 23 MB/s | 296 kB 00:00 (163/376): clang-resource-filesystem-15.0.7-2.f 2.4 MB/s | 13 kB 00:00 (164/376): autoconf-archive-2023.02.20-1.fc39.n 20 MB/s | 703 kB 00:00 (165/376): crypto-policies-scripts-20230301-1.g 35 MB/s | 116 kB 00:00 (166/376): cups-libs-2.4.2-11.fc39.x86_64.rpm 52 MB/s | 265 kB 00:00 (167/376): dbus-libs-1.14.6-1.fc38.x86_64.rpm 33 MB/s | 156 kB 00:00 (168/376): doxygen-1.9.6-7.fc39.x86_64.rpm 137 MB/s | 4.8 MB 00:00 (169/376): dejavu-sans-fonts-2.37-20.fc38.noarc 22 MB/s | 1.3 MB 00:00 (170/376): environment-modules-5.2.0-2.fc38.x86 19 MB/s | 565 kB 00:00 (171/376): fftw-3.3.10-7.fc39.x86_64.rpm 5.1 MB/s | 45 kB 00:00 (172/376): fftw-devel-3.3.10-7.fc39.x86_64.rpm 21 MB/s | 134 kB 00:00 (173/376): fftw-libs-3.3.10-7.fc39.x86_64.rpm 790 kB/s | 7.6 kB 00:00 (174/376): fftw-libs-long-3.3.10-7.fc39.x86_64. 32 MB/s | 505 kB 00:00 (175/376): fftw-libs-double-3.3.10-7.fc39.x86_6 43 MB/s | 1.2 MB 00:00 (176/376): fftw-libs-quad-3.3.10-7.fc39.x86_64. 51 MB/s | 739 kB 00:00 (177/376): fftw-libs-single-3.3.10-7.fc39.x86_6 61 MB/s | 1.2 MB 00:00 (178/376): flexiblas-3.3.1-1.fc39.x86_64.rpm 3.8 MB/s | 32 kB 00:00 (179/376): flexiblas-devel-3.3.1-1.fc39.x86_64. 8.3 MB/s | 116 kB 00:00 (180/376): flexiblas-netlib-3.3.1-1.fc39.x86_64 108 MB/s | 3.1 MB 00:00 (181/376): flexiblas-openblas-openmp-3.3.1-1.fc 4.2 MB/s | 17 kB 00:00 (182/376): flexiblas-openblas-openmp64-3.3.1-1. 1.6 MB/s | 17 kB 00:00 (183/376): fontconfig-2.14.2-2.fc39.x86_64.rpm 36 MB/s | 295 kB 00:00 (184/376): fonts-filesystem-2.0.5-11.fc38.noarc 1.3 MB/s | 8.1 kB 00:00 (185/376): freetype-2.13.0-1.fc39.x86_64.rpm 140 MB/s | 413 kB 00:00 (186/376): clang-libs-15.0.7-2.fc38.x86_64.rpm 92 MB/s | 21 MB 00:00 (187/376): fribidi-1.0.12-4.fc39.x86_64.rpm 3.7 MB/s | 89 kB 00:00 (188/376): flexiblas-netlib64-3.3.1-1.fc39.x86_ 38 MB/s | 3.0 MB 00:00 (189/376): gd-2.3.3-11.fc39.x86_64.rpm 20 MB/s | 139 kB 00:00 (190/376): gdk-pixbuf2-2.42.10-2.fc38.x86_64.rp 82 MB/s | 485 kB 00:00 (191/376): gettext-0.21.1-3.fc39.x86_64.rpm 211 MB/s | 1.0 MB 00:00 (192/376): gettext-envsubst-0.21.1-3.fc39.x86_6 7.7 MB/s | 37 kB 00:00 (193/376): gettext-devel-0.21.1-3.fc39.x86_64.r 23 MB/s | 221 kB 00:00 (194/376): gettext-common-devel-0.21.1-3.fc39.n 38 MB/s | 409 kB 00:00 (195/376): gettext-libs-0.21.1-3.fc39.x86_64.rp 115 MB/s | 325 kB 00:00 (196/376): gettext-runtime-0.21.1-3.fc39.x86_64 44 MB/s | 118 kB 00:00 (197/376): glib2-2.76.1-1.fc39.x86_64.rpm 293 MB/s | 2.8 MB 00:00 (198/376): gnutls-3.8.0-3.fc39.x86_64.rpm 96 MB/s | 1.1 MB 00:00 (199/376): google-noto-fonts-common-20230201-1. 3.9 MB/s | 16 kB 00:00 (200/376): google-droid-sans-fonts-20200215-14. 141 MB/s | 2.7 MB 00:00 (201/376): google-noto-sans-vf-fonts-20230201-1 56 MB/s | 580 kB 00:00 (202/376): graphite2-1.3.14-11.fc38.x86_64.rpm 11 MB/s | 95 kB 00:00 (203/376): harfbuzz-7.1.0-1.fc39.x86_64.rpm 143 MB/s | 889 kB 00:00 (204/376): gts-0.7.6-44.20121130.fc38.x86_64.rp 26 MB/s | 240 kB 00:00 (205/376): hdf5-1.12.1-11.fc38.x86_64.rpm 84 MB/s | 2.2 MB 00:00 (206/376): hdf-libs-4.2.15-12.fc38.x86_64.rpm 9.5 MB/s | 294 kB 00:00 (207/376): graphviz-8.0.1-1.fc39.x86_64.rpm 89 MB/s | 5.0 MB 00:00 (208/376): hdf5-devel-1.12.1-11.fc38.x86_64.rpm 54 MB/s | 1.3 MB 00:00 (209/376): hdf5-mpich-1.12.1-11.fc38.x86_64.rpm 72 MB/s | 2.1 MB 00:00 (210/376): hdf5-mpich-devel-1.12.1-11.fc38.x86_ 83 MB/s | 1.3 MB 00:00 (211/376): highway-1.0.4-1.fc39.x86_64.rpm 35 MB/s | 399 kB 00:00 (212/376): hdf5-openmpi-devel-1.12.1-11.fc38.x8 39 MB/s | 1.3 MB 00:00 (213/376): hdf5-openmpi-1.12.1-11.fc38.x86_64.r 43 MB/s | 2.1 MB 00:00 (214/376): jbig2dec-libs-0.19-8.fc38.x86_64.rpm 18 MB/s | 73 kB 00:00 (215/376): jbigkit-libs-2.1-25.fc38.x86_64.rpm 19 MB/s | 53 kB 00:00 (216/376): langpacks-core-font-en-3.0-31.fc38.n 7.6 MB/s | 10 kB 00:00 (217/376): lasi-1.1.3-10.fc38.x86_64.rpm 19 MB/s | 53 kB 00:00 (218/376): lcms2-2.15-1.fc39.x86_64.rpm 60 MB/s | 177 kB 00:00 (219/376): hypre-openmpi-2.24.0-4.fc39.x86_64.r 57 MB/s | 1.7 MB 00:00 (220/376): less-608-2.fc38.x86_64.rpm 37 MB/s | 168 kB 00:00 (221/376): libICE-1.0.10-10.fc38.x86_64.rpm 17 MB/s | 71 kB 00:00 (222/376): libSM-1.2.3-12.fc38.x86_64.rpm 11 MB/s | 41 kB 00:00 (223/376): libXft-2.3.6-2.fc38.x86_64.rpm 17 MB/s | 71 kB 00:00 (224/376): libXrender-0.9.11-2.fc38.x86_64.rpm 8.9 MB/s | 27 kB 00:00 (225/376): libXpm-3.5.15-3.fc38.x86_64.rpm 9.1 MB/s | 63 kB 00:00 (226/376): libXt-1.2.1-4.fc38.x86_64.rpm 90 MB/s | 179 kB 00:00 (227/376): libaec-1.0.6-4.fc38.x86_64.rpm 24 MB/s | 42 kB 00:00 (228/376): hypre-mpich-2.24.0-4.fc39.x86_64.rpm 25 MB/s | 1.7 MB 00:00 (229/376): libaec-devel-1.0.6-4.fc38.x86_64.rpm 2.0 MB/s | 12 kB 00:00 (230/376): libaom-3.6.0-1.fc39.x86_64.rpm 172 MB/s | 1.8 MB 00:00 (231/376): libavif-0.11.1-9.fc39.x86_64.rpm 8.8 MB/s | 84 kB 00:00 (232/376): libcurl-devel-8.0.1-2.fc39.x86_64.rp 114 MB/s | 988 kB 00:00 (233/376): libdatrie-0.2.13-5.fc38.x86_64.rpm 14 MB/s | 32 kB 00:00 (234/376): libfontenc-1.1.6-2.fc38.x86_64.rpm 22 MB/s | 32 kB 00:00 (235/376): libdav1d-1.1.0-1.fc39.x86_64.rpm 94 MB/s | 606 kB 00:00 (236/376): libijs-0.35-17.fc38.x86_64.rpm 5.3 MB/s | 29 kB 00:00 (237/376): libjpeg-turbo-2.1.4-2.fc38.x86_64.rp 59 MB/s | 183 kB 00:00 (238/376): libimagequant-4.0.1-4.fc39.x86_64.rp 49 MB/s | 302 kB 00:00 (239/376): liblzf-3.6-25.fc38.x86_64.rpm 5.7 MB/s | 28 kB 00:00 (240/376): libjxl-0.7.0-6.fc38.x86_64.rpm 93 MB/s | 1.0 MB 00:00 (241/376): libgs-10.01.0-1.fc39.x86_64.rpm 131 MB/s | 3.5 MB 00:00 (242/376): libpaper-2.0.10-1.fc39.x86_64.rpm 3.0 MB/s | 26 kB 00:00 (243/376): libpipeline-1.5.7-2.fc38.x86_64.rpm 11 MB/s | 52 kB 00:00 (244/376): libpng-1.6.37-14.fc38.x86_64.rpm 72 MB/s | 120 kB 00:00 (245/376): libqhull_r-7.2.1-12.fc38.x86_64.rpm 65 MB/s | 167 kB 00:00 (246/376): libraqm-0.8.0-4.fc38.x86_64.rpm 6.5 MB/s | 20 kB 00:00 (247/376): libthai-0.1.29-4.fc38.x86_64.rpm 111 MB/s | 213 kB 00:00 (248/376): libtiff-4.4.0-5.fc38.x86_64.rpm 44 MB/s | 197 kB 00:00 (249/376): librsvg2-2.56.0-1.fc39.x86_64.rpm 207 MB/s | 3.0 MB 00:00 (250/376): libwebp-1.3.0-2.fc38.x86_64.rpm 34 MB/s | 282 kB 00:00 (251/376): libvmaf-2.3.0-5.fc38.x86_64.rpm 14 MB/s | 180 kB 00:00 (252/376): libxslt-1.1.37-3.fc39.x86_64.rpm 63 MB/s | 184 kB 00:00 (253/376): lzo-2.10-8.fc38.x86_64.rpm 4.9 MB/s | 66 kB 00:00 (254/376): man-db-2.11.2-2.fc38.x86_64.rpm 34 MB/s | 1.3 MB 00:00 (255/376): metis-5.1.0-34.fc38.x86_64.rpm 20 MB/s | 573 kB 00:00 (256/376): mkfontscale-1.2.2-3.fc38.x86_64.rpm 2.4 MB/s | 32 kB 00:00 (257/376): mpark-variant-devel-1.4.0-9.fc38.x86 1.3 MB/s | 27 kB 00:00 (258/376): netcdf-cxx4-4.3.1-8.fc38.x86_64.rpm 5.6 MB/s | 88 kB 00:00 (259/376): llvm-libs-15.0.7-2.fc38.x86_64.rpm 231 MB/s | 25 MB 00:00 (260/376): netcdf-4.9.0-5.fc38.x86_64.rpm 15 MB/s | 833 kB 00:00 (261/376): netpbm-11.02.00-1.fc39.x86_64.rpm 34 MB/s | 185 kB 00:00 (262/376): nettle-3.8-3.fc38.x86_64.rpm 135 MB/s | 412 kB 00:00 (263/376): nspr-4.35.0-5.fc39.x86_64.rpm 50 MB/s | 136 kB 00:00 (264/376): nss-3.88.1-2.fc39.x86_64.rpm 195 MB/s | 691 kB 00:00 (265/376): netcdf-devel-4.9.0-5.fc38.x86_64.rpm 5.7 MB/s | 99 kB 00:00 (266/376): nss-softokn-3.88.1-2.fc39.x86_64.rpm 252 MB/s | 1.0 MB 00:00 (267/376): nss-softokn-freebl-3.88.1-2.fc39.x86 67 MB/s | 325 kB 00:00 (268/376): nss-sysinit-3.88.1-2.fc39.x86_64.rpm 9.0 MB/s | 18 kB 00:00 (269/376): nss-util-3.88.1-2.fc39.x86_64.rpm 35 MB/s | 86 kB 00:00 (270/376): openblas-0.3.21-4.fc38.x86_64.rpm 11 MB/s | 35 kB 00:00 (271/376): netcdf-cxx4-devel-4.3.1-8.fc38.x86_6 1.0 MB/s | 73 kB 00:00 (272/376): openjpeg2-2.5.0-3.fc38.x86_64.rpm 26 MB/s | 178 kB 00:00 (273/376): openblas-openmp-0.3.21-4.fc38.x86_64 139 MB/s | 5.1 MB 00:00 (274/376): pango-1.50.14-1.fc39.x86_64.rpm 31 MB/s | 342 kB 00:00 (275/376): openblas-openmp64-0.3.21-4.fc38.x86_ 96 MB/s | 4.9 MB 00:00 (276/376): petsc-mpich-3.17.4-15.fc39.x86_64.rp 85 MB/s | 6.7 MB 00:00 (277/376): petsc-mpich-devel-3.17.4-15.fc39.x86 41 MB/s | 3.4 MB 00:00 (278/376): pixman-0.42.2-1.fc39.x86_64.rpm 51 MB/s | 284 kB 00:00 (279/376): poppler-23.02.0-1.fc38.x86_64.rpm 87 MB/s | 1.2 MB 00:00 (280/376): poppler-data-0.4.11-4.fc38.noarch.rp 112 MB/s | 2.0 MB 00:00 (281/376): poppler-glib-23.02.0-1.fc38.x86_64.r 37 MB/s | 177 kB 00:00 (282/376): petsc-openmpi-3.17.4-15.fc39.x86_64. 56 MB/s | 7.0 MB 00:00 (283/376): petsc-openmpi-devel-3.17.4-15.fc39.x 70 MB/s | 6.4 MB 00:00 (284/376): ptscotch-openmpi-6.1.2-3.fc37.x86_64 17 MB/s | 547 kB 00:00 (285/376): ptscotch-mpich-6.1.2-3.fc37.x86_64.r 12 MB/s | 546 kB 00:00 (286/376): python3-appdirs-1.4.4-8.fc38.noarch. 3.3 MB/s | 23 kB 00:00 (287/376): python3-boutdata-0.1.9-2.fc38.noarch 11 MB/s | 188 kB 00:00 (288/376): python3-boututils-0.1.9-3.fc38.noarc 9.5 MB/s | 171 kB 00:00 (289/376): python3-brotli-1.0.9-11.fc38.x86_64. 34 MB/s | 320 kB 00:00 (290/376): python3-cairo-1.23.0-2.fc38.x86_64.r 23 MB/s | 125 kB 00:00 (291/376): python3-cached_property-1.5.2-9.fc38 2.0 MB/s | 20 kB 00:00 (292/376): python3-charset-normalizer-3.1.0-1.f 24 MB/s | 107 kB 00:00 (293/376): python3-contourpy-1.0.7-2.fc38.x86_6 62 MB/s | 237 kB 00:00 (294/376): python3-cftime-1.6.1-2.fc38.x86_64.r 15 MB/s | 185 kB 00:00 (295/376): python3-cycler-0.11.0-7.fc38.noarch. 5.7 MB/s | 21 kB 00:00 (296/376): python3-babel-2.12.1-1.fc39.noarch.r 125 MB/s | 6.9 MB 00:00 (297/376): python3-dateutil-2.8.2-6.fc39.noarch 36 MB/s | 360 kB 00:00 (298/376): python3-docutils-0.19-2.fc38.noarch. 58 MB/s | 1.1 MB 00:00 (299/376): python3-fs-2.4.16-1.fc39.noarch.rpm 26 MB/s | 312 kB 00:00 (300/376): python3-fonttools-4.39.3-1.fc39.x86_ 115 MB/s | 2.8 MB 00:00 (301/376): python3-h5py-openmpi-3.8.0-1.fc39.x8 49 MB/s | 936 kB 00:00 (302/376): python3-idna-3.4-2.fc38.noarch.rpm 14 MB/s | 110 kB 00:00 (303/376): python3-h5py-mpich-3.8.0-1.fc39.x86_ 35 MB/s | 936 kB 00:00 (304/376): python3-imagesize-1.4.1-2.fc38.noarc 5.2 MB/s | 22 kB 00:00 (305/376): python3-jinja2-3.0.3-7.fc38.noarch.r 68 MB/s | 638 kB 00:00 (306/376): python3-kiwisolver-1.4.4-7.fc38.x86_ 5.9 MB/s | 66 kB 00:00 (307/376): python3-markupsafe-2.1.2-1.fc38.x86_ 1.8 MB/s | 30 kB 00:00 (308/376): python3-lxml-4.9.2-2.fc38.x86_64.rpm 51 MB/s | 1.3 MB 00:00 (309/376): python3-matplotlib-data-3.7.1-1.fc39 56 MB/s | 543 kB 00:00 (310/376): python3-matplotlib-tk-3.7.1-1.fc39.x 6.7 MB/s | 53 kB 00:00 (311/376): python3-matplotlib-3.7.1-1.fc39.x86_ 81 MB/s | 4.3 MB 00:00 (312/376): python3-matplotlib-data-fonts-3.7.1- 59 MB/s | 2.3 MB 00:00 (313/376): python3-munkres-1.1.2-14.fc38.noarch 3.1 MB/s | 26 kB 00:00 (314/376): python3-mpmath-1.3.0-1.fc39.noarch.r 31 MB/s | 1.1 MB 00:00 (315/376): python3-numexpr-2.8.4-1.fc38.x86_64. 11 MB/s | 168 kB 00:00 (316/376): python3-numpy-f2py-1.24.1-3.fc39.x86 61 MB/s | 498 kB 00:00 (317/376): python3-netcdf4-1.6.3-1.fc39.x86_64. 17 MB/s | 564 kB 00:00 (318/376): python3-olefile-0.46-19.fc38.noarch. 13 MB/s | 67 kB 00:00 (319/376): python3-pillow-tk-9.5.0-1.fc39.x86_6 5.3 MB/s | 30 kB 00:00 (320/376): python3-pillow-9.5.0-1.fc39.x86_64.r 50 MB/s | 931 kB 00:00 (321/376): python3-pyparsing-3.0.9-3.fc38.noarc 42 MB/s | 262 kB 00:00 (322/376): python3-pysocks-1.7.1-17.fc39.noarch 2.9 MB/s | 40 kB 00:00 (323/376): python3-numpy-1.24.1-3.fc39.x86_64.r 109 MB/s | 7.8 MB 00:00 (324/376): python3-pygments-2.14.0-1.fc39.noarc 56 MB/s | 2.5 MB 00:00 (325/376): python3-requests-2.28.2-1.fc38.noarc 10 MB/s | 155 kB 00:00 (326/376): python3-six-1.16.0-9.fc38.noarch.rpm 17 MB/s | 42 kB 00:00 (327/376): python3-snowballstemmer-2.2.0-5.fc38 44 MB/s | 258 kB 00:00 (328/376): python3-sphinx-theme-alabaster-0.7.1 8.3 MB/s | 29 kB 00:00 (329/376): python3-sphinxcontrib-applehelp-1.0. 15 MB/s | 49 kB 00:00 (330/376): python3-sphinxcontrib-devhelp-1.0.2- 8.8 MB/s | 42 kB 00:00 (331/376): python3-sphinxcontrib-htmlhelp-2.0.0 8.4 MB/s | 59 kB 00:00 (332/376): python3-sphinx-5.3.0-4.fc39.noarch.r 95 MB/s | 2.7 MB 00:00 (333/376): python3-sphinxcontrib-jsmath-1.0.1-1 3.4 MB/s | 18 kB 00:00 (334/376): python3-sphinxcontrib-qthelp-1.0.3-1 15 MB/s | 48 kB 00:00 (335/376): python3-sphinxcontrib-serializinghtm 12 MB/s | 48 kB 00:00 (336/376): python3-tables-3.7.0-7.fc38.x86_64.r 32 MB/s | 1.8 MB 00:00 (337/376): python3-tkinter-3.11.2-1.fc39.x86_64 54 MB/s | 417 kB 00:00 (338/376): python3-urllib3-1.26.12-2.fc38.noarc 24 MB/s | 252 kB 00:00 (339/376): rav1e-libs-0.5.1-9.fc39.x86_64.rpm 80 MB/s | 890 kB 00:00 (340/376): scalapack-common-2.2.0-4.fc39.x86_64 1.1 MB/s | 18 kB 00:00 (341/376): python3-scipy-1.10.1-2.fc39.x86_64.r 119 MB/s | 21 MB 00:00 (342/376): scalapack-mpich-2.2.0-4.fc39.x86_64. 38 MB/s | 1.7 MB 00:00 (343/376): scalapack-openmpi-2.2.0-4.fc39.x86_6 49 MB/s | 1.7 MB 00:00 (344/376): scotch-6.1.2-3.fc37.x86_64.rpm 16 MB/s | 397 kB 00:00 (345/376): python3-sympy-1.11.1-4.fc39.x86_64.r 93 MB/s | 18 MB 00:00 (346/376): shared-mime-info-2.2-3.fc38.x86_64.r 15 MB/s | 381 kB 00:00 (347/376): snappy-1.1.10-1.fc39.x86_64.rpm 1.6 MB/s | 37 kB 00:00 (348/376): suitesparse-5.13.0-2.fc38.x86_64.rpm 79 MB/s | 1.1 MB 00:00 (349/376): suitesparse64-5.13.0-2.fc38.x86_64.r 52 MB/s | 1.1 MB 00:00 (350/376): sundials-5.8.0-15.fc39.x86_64.rpm 39 MB/s | 1.0 MB 00:00 (351/376): sundials-mpich-devel-5.8.0-15.fc39.x 51 MB/s | 1.1 MB 00:00 (352/376): sundials-mpich-5.8.0-15.fc39.x86_64. 38 MB/s | 1.1 MB 00:00 (353/376): sundials-devel-5.8.0-15.fc39.x86_64. 22 MB/s | 1.1 MB 00:00 (354/376): sundials-openmpi-devel-5.8.0-15.fc39 36 MB/s | 1.1 MB 00:00 (355/376): sundials-openmpi-5.8.0-15.fc39.x86_6 25 MB/s | 1.1 MB 00:00 (356/376): superlu_dist-mpich-8.1.1-3.fc39.x86_ 14 MB/s | 491 kB 00:00 (357/376): superlu_dist-openmpi-8.1.1-3.fc39.x8 26 MB/s | 494 kB 00:00 (358/376): svt-av1-libs-1.4.1-2.fc38.x86_64.rpm 73 MB/s | 2.0 MB 00:00 (359/376): urw-base35-bookman-fonts-20200910-16 36 MB/s | 848 kB 00:00 (360/376): tk-8.6.12-4.fc38.x86_64.rpm 42 MB/s | 1.6 MB 00:00 (361/376): urw-base35-d050000l-fonts-20200910-1 7.1 MB/s | 76 kB 00:00 (362/376): urw-base35-c059-fonts-20200910-16.fc 51 MB/s | 875 kB 00:00 (363/376): urw-base35-fonts-20200910-16.fc38.no 3.2 MB/s | 11 kB 00:00 (364/376): urw-base35-fonts-common-20200910-16. 9.7 MB/s | 21 kB 00:00 (365/376): urw-base35-gothic-fonts-20200910-16. 71 MB/s | 643 kB 00:00 (366/376): urw-base35-nimbus-roman-fonts-202009 92 MB/s | 857 kB 00:00 (367/376): urw-base35-nimbus-mono-ps-fonts-2020 71 MB/s | 796 kB 00:00 (368/376): urw-base35-p052-fonts-20200910-16.fc 98 MB/s | 974 kB 00:00 (369/376): urw-base35-nimbus-sans-fonts-2020091 109 MB/s | 1.3 MB 00:00 (370/376): urw-base35-standard-symbols-ps-fonts 3.7 MB/s | 42 kB 00:00 (371/376): urw-base35-z003-fonts-20200910-16.fc 80 MB/s | 276 kB 00:00 (372/376): vim-filesystem-9.0.1429-1.fc39.noarc 11 MB/s | 18 kB 00:00 (373/376): xml-common-0.6.3-60.fc38.noarch.rpm 10 MB/s | 31 kB 00:00 (374/376): xapian-core-libs-1.4.20-3.fc39.x86_6 126 MB/s | 757 kB 00:00 (375/376): xorg-x11-fonts-ISO8859-1-100dpi-7.5- 102 MB/s | 1.1 MB 00:00 (376/376): zlib-devel-1.2.13-3.fc38.x86_64.rpm 5.6 MB/s | 45 kB 00:00 -------------------------------------------------------------------------------- Total 148 MB/s | 274 MB 00:01 Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Preparing : 1/1 Installing : libgfortran-13.0.1-0.12.fc39.x86_64 1/376 Installing : libquadmath-13.0.1-0.12.fc39.x86_64 2/376 Installing : libpng-2:1.6.37-14.fc38.x86_64 3/376 Installing : libjpeg-turbo-2.1.4-2.fc38.x86_64 4/376 Installing : nspr-4.35.0-5.fc39.x86_64 5/376 Installing : metis-5.1.0-34.fc38.x86_64 6/376 Installing : libaec-1.0.6-4.fc38.x86_64 7/376 Installing : hdf5-1.12.1-11.fc38.x86_64 8/376 Installing : hwloc-libs-2.9.0-6.fc39.x86_64 9/376 Installing : fonts-filesystem-1:2.0.5-11.fc38.noarch 10/376 Installing : urw-base35-fonts-common-20200910-16.fc38.noarch 11/376 Installing : flexiblas-3.3.1-1.fc39.x86_64 12/376 Installing : nss-util-3.88.1-2.fc39.x86_64 13/376 Installing : libwebp-1.3.0-2.fc38.x86_64 14/376 Installing : libunistring-1.1-3.fc38.x86_64 15/376 Installing : libmpc-1.3.1-2.fc38.x86_64 16/376 Installing : gettext-libs-0.21.1-3.fc39.x86_64 17/376 Installing : libaec-devel-1.0.6-4.fc38.x86_64 18/376 Installing : zlib-devel-1.2.13-3.fc38.x86_64 19/376 Installing : tcl-1:8.6.12-4.fc38.x86_64 20/376 Installing : python-rpm-macros-3.11-10.fc39.noarch 21/376 Installing : openjpeg2-2.5.0-3.fc38.x86_64 22/376 Installing : numactl-libs-2.0.16-2.fc38.x86_64 23/376 Installing : libnl3-3.7.0-3.fc38.x86_64 24/376 Installing : libibverbs-44.0-3.fc38.x86_64 25/376 Installing : lcms2-2.15-1.fc39.x86_64 26/376 Installing : expat-2.5.0-2.fc38.x86_64 27/376 Installing : cmake-filesystem-3.26.2-1.fc39.x86_64 28/376 Installing : scalapack-common-2.2.0-4.fc39.x86_64 29/376 Installing : librdmacm-44.0-3.fc38.x86_64 30/376 Installing : libpsm2-11.2.230-1.fc38.x86_64 31/376 Installing : python3-rpm-macros-3.11-10.fc39.noarch 32/376 Installing : cgnslib-libs-4.3.0-7.fc38.x86_64 33/376 Installing : fftw-libs-quad-3.3.10-7.fc39.x86_64 34/376 Installing : python3-matplotlib-data-fonts-3.7.1-1.fc39.noarc 35/376 Installing : python3-matplotlib-data-3.7.1-1.fc39.noarch 36/376 Installing : scotch-6.1.2-3.fc37.x86_64 37/376 Installing : openblas-0.3.21-4.fc38.x86_64 38/376 Installing : mpi4py-common-3.1.4-3.fc39.noarch 39/376 Installing : libtool-ltdl-2.4.7-6.fc38.x86_64 40/376 Installing : liblzf-3.6-25.fc38.x86_64 41/376 Installing : libimagequant-4.0.1-4.fc39.x86_64 42/376 Installing : libedit-3.1-45.20221030cvs.fc38.x86_64 43/376 Installing : libICE-1.0.10-10.fc38.x86_64 44/376 Installing : less-608-2.fc38.x86_64 45/376 Installing : kmod-libs-30-4.fc38.x86_64 46/376 Running scriptlet: groff-base-1.22.4-11.fc38.x86_64 47/376 Installing : groff-base-1.22.4-11.fc38.x86_64 47/376 Running scriptlet: groff-base-1.22.4-11.fc38.x86_64 47/376 Installing : fribidi-1.0.12-4.fc39.x86_64 48/376 Installing : fftw-libs-single-3.3.10-7.fc39.x86_64 49/376 Installing : fftw-libs-long-3.3.10-7.fc39.x86_64 50/376 Installing : fftw-libs-double-3.3.10-7.fc39.x86_64 51/376 Installing : adobe-mappings-cmap-20230118-1.fc38.noarch 52/376 Installing : MUMPS-common-5.5.1-3.fc39.noarch 53/376 Installing : adobe-mappings-cmap-deprecated-20230118-1.fc38.n 54/376 Installing : fftw-3.3.10-7.fc39.x86_64 55/376 Installing : fftw-libs-3.3.10-7.fc39.x86_64 56/376 Installing : libSM-1.2.3-12.fc38.x86_64 57/376 Installing : llvm-libs-15.0.7-2.fc38.x86_64 58/376 Installing : openblas-openmp-0.3.21-4.fc38.x86_64 59/376 Installing : flexiblas-netlib-3.3.1-1.fc39.x86_64 60/376 Installing : flexiblas-openblas-openmp-3.3.1-1.fc39.x86_64 61/376 Installing : suitesparse-5.13.0-2.fc38.x86_64 62/376 Installing : openblas-openmp64-0.3.21-4.fc38.x86_64 63/376 Installing : flexiblas-netlib64-3.3.1-1.fc39.x86_64 64/376 Installing : flexiblas-openblas-openmp64-3.3.1-1.fc39.x86_64 65/376 Installing : suitesparse64-5.13.0-2.fc38.x86_64 66/376 Installing : pyproject-rpm-macros-1.6.3-1.fc39.noarch 67/376 Installing : ucx-1.13.1-4.fc39.x86_64 68/376 Installing : cpp-13.0.1-0.12.fc39.x86_64 69/376 Installing : nss-softokn-freebl-3.88.1-2.fc39.x86_64 70/376 Installing : nss-softokn-3.88.1-2.fc39.x86_64 71/376 Installing : urw-base35-bookman-fonts-20200910-16.fc38.noarch 72/376 Running scriptlet: urw-base35-bookman-fonts-20200910-16.fc38.noarch 72/376 Installing : urw-base35-c059-fonts-20200910-16.fc38.noarch 73/376 Running scriptlet: urw-base35-c059-fonts-20200910-16.fc38.noarch 73/376 Installing : urw-base35-d050000l-fonts-20200910-16.fc38.noarc 74/376 Running scriptlet: urw-base35-d050000l-fonts-20200910-16.fc38.noarc 74/376 Installing : urw-base35-gothic-fonts-20200910-16.fc38.noarch 75/376 Running scriptlet: urw-base35-gothic-fonts-20200910-16.fc38.noarch 75/376 Installing : urw-base35-nimbus-mono-ps-fonts-20200910-16.fc38 76/376 Running scriptlet: urw-base35-nimbus-mono-ps-fonts-20200910-16.fc38 76/376 Installing : urw-base35-nimbus-roman-fonts-20200910-16.fc38.n 77/376 Running scriptlet: urw-base35-nimbus-roman-fonts-20200910-16.fc38.n 77/376 Installing : urw-base35-nimbus-sans-fonts-20200910-16.fc38.no 78/376 Running scriptlet: urw-base35-nimbus-sans-fonts-20200910-16.fc38.no 78/376 Installing : urw-base35-p052-fonts-20200910-16.fc38.noarch 79/376 Running scriptlet: urw-base35-p052-fonts-20200910-16.fc38.noarch 79/376 Installing : urw-base35-standard-symbols-ps-fonts-20200910-16 80/376 Running scriptlet: urw-base35-standard-symbols-ps-fonts-20200910-16 80/376 Installing : urw-base35-z003-fonts-20200910-16.fc38.noarch 81/376 Running scriptlet: urw-base35-z003-fonts-20200910-16.fc38.noarch 81/376 Installing : urw-base35-fonts-20200910-16.fc38.noarch 82/376 Installing : dejavu-sans-fonts-2.37-20.fc38.noarch 83/376 Installing : hdf-libs-4.2.15-12.fc38.x86_64 84/376 Running scriptlet: xml-common-0.6.3-60.fc38.noarch 85/376 Installing : xml-common-0.6.3-60.fc38.noarch 85/376 Installing : xapian-core-libs-1.4.20-3.fc39.x86_64 86/376 Installing : vim-filesystem-2:9.0.1429-1.fc39.noarch 87/376 Installing : tcsh-6.24.07-2.fc38.x86_64 88/376 Running scriptlet: tcsh-6.24.07-2.fc38.x86_64 88/376 Installing : orangefs-2.9.8-8.fc38.x86_64 89/376 Installing : svt-av1-libs-1.4.1-2.fc38.x86_64 90/376 Installing : snappy-1.1.10-1.fc39.x86_64 91/376 Installing : blosc-1.21.2-2.fc38.x86_64 92/376 Installing : netcdf-4.9.0-5.fc38.x86_64 93/376 Installing : rav1e-libs-0.5.1-9.fc39.x86_64 94/376 Installing : python-setuptools-wheel-65.5.1-2.fc38.noarch 95/376 Installing : python-pip-wheel-23.0.1-2.fc39.noarch 96/376 Installing : procps-ng-3.3.17-9.fc38.x86_64 97/376 Installing : poppler-data-0.4.11-4.fc38.noarch 98/376 Installing : pixman-0.42.2-1.fc39.x86_64 99/376 Installing : openssh-9.0p1-14.fc39.1.x86_64 100/376 Installing : nettle-3.8-3.fc38.x86_64 101/376 Installing : gnutls-3.8.0-3.fc39.x86_64 102/376 Installing : glib2-2.76.1-1.fc39.x86_64 103/376 Installing : shared-mime-info-2.2-3.fc38.x86_64 104/376 Running scriptlet: shared-mime-info-2.2-3.fc38.x86_64 104/376 Installing : gdk-pixbuf2-2.42.10-2.fc38.x86_64 105/376 Installing : netpbm-11.02.00-1.fc39.x86_64 106/376 Installing : gts-0.7.6-44.20121130.fc38.x86_64 107/376 Installing : netcdf-cxx4-4.3.1-8.fc38.x86_64 108/376 Installing : ncurses-6.4-3.20230114.fc38.x86_64 109/376 Installing : perl-Text-Tabs+Wrap-2021.0814-490.fc38.noarch 110/376 Installing : perl-if-0.61.000-495.fc38.noarch 111/376 Installing : perl-Time-Local-2:1.300-490.fc38.noarch 112/376 Installing : perl-File-Path-2.18-490.fc38.noarch 113/376 Installing : perl-Pod-Escapes-1:1.07-490.fc38.noarch 114/376 Installing : perl-Class-Struct-0.66-495.fc38.noarch 115/376 Installing : perl-POSIX-2.03-495.fc38.x86_64 116/376 Installing : perl-Term-ANSIColor-5.01-491.fc38.noarch 117/376 Installing : perl-IPC-Open3-1.22-495.fc38.noarch 118/376 Installing : perl-HTTP-Tiny-0.082-2.fc38.noarch 119/376 Installing : perl-File-Temp-1:0.231.100-490.fc38.noarch 120/376 Installing : perl-Term-Cap-1.18-1.fc39.noarch 121/376 Installing : perl-Pod-Simple-1:3.43-491.fc38.noarch 122/376 Installing : perl-Socket-4:2.036-2.fc38.x86_64 123/376 Installing : perl-SelectSaver-1.02-495.fc38.noarch 124/376 Installing : perl-Symbol-1.09-495.fc38.noarch 125/376 Installing : perl-File-stat-1.12-495.fc38.noarch 126/376 Installing : perl-podlators-1:5.01-2.fc38.noarch 127/376 Installing : perl-Pod-Perldoc-3.28.01-491.fc38.noarch 128/376 Installing : perl-Fcntl-1.15-495.fc38.x86_64 129/376 Installing : perl-Text-ParseWords-3.31-490.fc38.noarch 130/376 Installing : perl-mro-1.26-495.fc38.x86_64 131/376 Installing : perl-IO-1.50-495.fc38.x86_64 132/376 Installing : perl-overloading-0.02-495.fc38.noarch 133/376 Installing : perl-Pod-Usage-4:2.03-4.fc38.noarch 134/376 Installing : perl-Errno-1.36-495.fc38.x86_64 135/376 Installing : perl-File-Basename-2.85-495.fc38.noarch 136/376 Installing : perl-Getopt-Std-1.13-495.fc38.noarch 137/376 Installing : perl-MIME-Base64-3.16-490.fc38.x86_64 138/376 Installing : perl-Scalar-List-Utils-5:1.63-490.fc38.x86_64 139/376 Installing : perl-constant-1.33-491.fc38.noarch 140/376 Installing : perl-Storable-1:3.26-490.fc38.x86_64 141/376 Installing : perl-overload-1.35-495.fc38.noarch 142/376 Installing : perl-parent-1:0.241-1.fc39.noarch 143/376 Installing : perl-vars-1.05-495.fc38.noarch 144/376 Installing : perl-Getopt-Long-1:2.54-2.fc38.noarch 145/376 Installing : perl-Carp-1.52-490.fc38.noarch 146/376 Installing : perl-Exporter-5.77-490.fc38.noarch 147/376 Installing : perl-PathTools-3.84-490.fc38.x86_64 148/376 Installing : perl-DynaLoader-1.52-495.fc38.x86_64 149/376 Installing : perl-Encode-4:3.19-493.fc38.x86_64 150/376 Installing : perl-libs-4:5.36.0-495.fc38.x86_64 151/376 Installing : perl-interpreter-4:5.36.0-495.fc38.x86_64 152/376 Installing : perl-threads-1:2.27-490.fc38.x86_64 153/376 Installing : perl-threads-shared-1.64-490.fc38.x86_64 154/376 Installing : perl-Thread-Queue-3.14-490.fc38.noarch 155/376 Installing : perl-Data-Dumper-2.184-491.fc38.x86_64 156/376 Installing : perl-B-1.83-495.fc38.x86_64 157/376 Installing : perl-File-Compare-1.100.700-495.fc38.noarch 158/376 Installing : perl-File-Copy-2.39-495.fc38.noarch 159/376 Installing : perl-File-Find-1.40-495.fc38.noarch 160/376 Installing : munge-libs-0.5.15-4.fc38.x86_64 161/376 Installing : pmix-4.1.2-4.fc38.x86_64 162/376 Installing : mpdecimal-2.5.1-6.fc38.x86_64 163/376 Installing : m4-1.4.19-4.fc37.x86_64 164/376 Installing : lzo-2.10-8.fc38.x86_64 165/376 Installing : libxslt-1.1.37-3.fc39.x86_64 166/376 Installing : libvmaf-2.3.0-5.fc38.x86_64 167/376 Installing : libstdc++-devel-13.0.1-0.12.fc39.x86_64 168/376 Installing : libseccomp-2.5.3-4.fc38.x86_64 169/376 Installing : libqhull_r-1:7.2.1-12.fc38.x86_64 170/376 Installing : libpipeline-1.5.7-2.fc38.x86_64 171/376 Running scriptlet: man-db-2.11.2-2.fc38.x86_64 172/376 Installing : man-db-2.11.2-2.fc38.x86_64 172/376 Running scriptlet: man-db-2.11.2-2.fc38.x86_64 172/376 Installing : environment-modules-5.2.0-2.fc38.x86_64 173/376 Running scriptlet: environment-modules-5.2.0-2.fc38.x86_64 173/376 Installing : rpm-mpi-hooks-8-5.fc38.noarch 174/376 Installing : libpaper-1:2.0.10-1.fc39.x86_64 175/376 Installing : libijs-0.35-17.fc38.x86_64 176/376 Installing : libibumad-44.0-3.fc38.x86_64 177/376 Installing : opensm-libs-3.3.24-5.fc38.x86_64 178/376 Installing : libfontenc-1.1.6-2.fc38.x86_64 179/376 Installing : libdav1d-1.1.0-1.fc39.x86_64 180/376 Installing : libdatrie-0.2.13-5.fc38.x86_64 181/376 Installing : libthai-0.1.29-4.fc38.x86_64 182/376 Installing : libcurl-devel-8.0.1-2.fc39.x86_64 183/376 Installing : libcbor-0.10.2-1.fc39.x86_64 184/376 Installing : libfido2-1.13.0-2.fc39.x86_64 185/376 Installing : openssh-clients-9.0p1-14.fc39.1.x86_64 186/376 Running scriptlet: openssh-clients-9.0p1-14.fc39.1.x86_64 186/376 Installing : libb2-0.98.1-8.fc38.x86_64 187/376 Installing : libargon2-20190702-2.fc38.x86_64 188/376 Installing : libXau-1.0.11-2.fc38.x86_64 189/376 Installing : libxcb-1.13.1-11.fc38.x86_64 190/376 Installing : libX11-common-1.8.4-1.fc38.noarch 191/376 Installing : libX11-1.8.4-1.fc38.x86_64 192/376 Installing : libXrender-0.9.11-2.fc38.x86_64 193/376 Installing : libXext-1.3.5-2.fc38.x86_64 194/376 Installing : libXpm-3.5.15-3.fc38.x86_64 195/376 Installing : libXt-1.2.1-4.fc38.x86_64 196/376 Installing : kmod-30-4.fc38.x86_64 197/376 Installing : kernel-headers-6.3.0-0.rc5.git0.1.fc39.x86_64 198/376 Installing : kbd-misc-2.5.1-5.fc39.noarch 199/376 Installing : kbd-legacy-2.5.1-5.fc39.noarch 200/376 Installing : kbd-2.5.1-5.fc39.x86_64 201/376 Installing : json-c-0.16-4.fc38.x86_64 202/376 Installing : jbigkit-libs-2.1-25.fc38.x86_64 203/376 Installing : libtiff-4.4.0-5.fc38.x86_64 204/376 Installing : jbig2dec-libs-0.19-8.fc38.x86_64 205/376 Installing : highway-1.0.4-1.fc39.x86_64 206/376 Installing : libjxl-1:0.7.0-6.fc38.x86_64 207/376 Installing : libaom-3.6.0-1.fc39.x86_64 208/376 Installing : libavif-0.11.1-9.fc39.x86_64 209/376 Installing : graphite2-1.3.14-11.fc38.x86_64 210/376 Installing : google-noto-fonts-common-20230201-1.fc38.noarch 211/376 Installing : google-noto-sans-vf-fonts-20230201-1.fc38.noarch 212/376 Installing : google-droid-sans-fonts-20200215-14.fc38.noarch 213/376 Installing : langpacks-core-font-en-3.0-31.fc38.noarch 214/376 Installing : cairo-1.17.8-3.fc39.x86_64 215/376 Installing : harfbuzz-7.1.0-1.fc39.x86_64 216/376 Installing : freetype-2.13.0-1.fc39.x86_64 217/376 Installing : fontconfig-2.14.2-2.fc39.x86_64 218/376 Running scriptlet: fontconfig-2.14.2-2.fc39.x86_64 218/376 Installing : libXft-2.3.6-2.fc38.x86_64 219/376 Installing : pango-1.50.14-1.fc39.x86_64 220/376 Installing : lasi-1.1.3-10.fc38.x86_64 221/376 Running scriptlet: tk-1:8.6.12-4.fc38.x86_64 222/376 Installing : tk-1:8.6.12-4.fc38.x86_64 222/376 Installing : python3-3.11.2-1.fc39.x86_64 223/376 Installing : python3-tkinter-3.11.2-1.fc39.x86_64 224/376 Installing : python3-libs-3.11.2-1.fc39.x86_64 225/376 Installing : mpich-4.0.3-1.fc39.x86_64 226/376 Installing : python3-numpy-1:1.24.1-3.fc39.x86_64 227/376 Installing : python3-six-1.16.0-9.fc38.noarch 228/376 Installing : ptscotch-mpich-6.1.2-3.fc37.x86_64 229/376 Installing : python3-packaging-23.0-1.fc38.noarch 230/376 Installing : hdf5-mpich-1.12.1-11.fc38.x86_64 231/376 Installing : python3-numexpr-2.8.4-1.fc38.x86_64 232/376 Installing : scalapack-mpich-2.2.0-4.fc39.x86_64 233/376 Installing : python3-Cython-3.0.0~b2-1.fc39.x86_64 234/376 Installing : python3-cached_property-1.5.2-9.fc38.noarch 235/376 Installing : python3-idna-3.4-2.fc38.noarch 236/376 Installing : MUMPS-mpich-5.5.1-3.fc39.x86_64 237/376 Installing : python3-rpm-generators-14-3.fc39.noarch 238/376 Installing : python3-devel-3.11.2-1.fc39.x86_64 239/376 Installing : python3-numpy-f2py-1:1.24.1-3.fc39.x86_64 240/376 Installing : python3-scipy-1.10.1-2.fc39.x86_64 241/376 Installing : python3-dateutil-1:2.8.2-6.fc39.noarch 242/376 Installing : python3-cftime-1.6.1-2.fc38.x86_64 243/376 Installing : python3-netcdf4-1.6.3-1.fc39.x86_64 244/376 Installing : python3-contourpy-1.0.7-2.fc38.x86_64 245/376 Installing : python3-mpich-4.0.3-1.fc39.x86_64 246/376 Installing : python3-mpi4py-mpich-3.1.4-3.fc39.x86_64 247/376 Installing : crypto-policies-scripts-20230301-1.gita12f7b2.fc 248/376 Installing : nss-sysinit-3.88.1-2.fc39.x86_64 249/376 Installing : nss-3.88.1-2.fc39.x86_64 250/376 Running scriptlet: nss-3.88.1-2.fc39.x86_64 250/376 Installing : poppler-23.02.0-1.fc38.x86_64 251/376 Installing : poppler-glib-23.02.0-1.fc38.x86_64 252/376 Installing : python3-appdirs-1.4.4-8.fc38.noarch 253/376 Installing : python3-babel-2.12.1-1.fc39.noarch 254/376 Installing : python3-brotli-1.0.9-11.fc38.x86_64 255/376 Installing : python3-cairo-1.23.0-2.fc38.x86_64 256/376 Installing : python3-charset-normalizer-3.1.0-1.fc39.noarch 257/376 Installing : python3-cycler-0.11.0-7.fc38.noarch 258/376 Installing : python3-docutils-0.19-2.fc38.noarch 259/376 Installing : python3-imagesize-1.4.1-2.fc38.noarch 260/376 Installing : python3-kiwisolver-1.4.4-7.fc38.x86_64 261/376 Installing : python3-lxml-4.9.2-2.fc38.x86_64 262/376 Installing : python3-markupsafe-2.1.2-1.fc38.x86_64 263/376 Installing : python3-jinja2-3.0.3-7.fc38.noarch 264/376 Installing : python3-munkres-1.1.2-14.fc38.noarch 265/376 Installing : python3-olefile-0.46-19.fc38.noarch 266/376 Installing : python3-pygments-2.14.0-1.fc39.noarch 267/376 Installing : python3-pyparsing-3.0.9-3.fc38.noarch 268/376 Installing : python3-pysocks-1.7.1-17.fc39.noarch 269/376 Installing : python3-urllib3-1.26.12-2.fc38.noarch 270/376 Installing : python3-requests-2.28.2-1.fc38.noarch 271/376 Installing : python3-setuptools-65.5.1-2.fc38.noarch 272/376 Installing : python3-fs-2.4.16-1.fc39.noarch 273/376 Installing : python3-fonttools-4.39.3-1.fc39.x86_64 274/376 Installing : python3-snowballstemmer-2.2.0-5.fc38.noarch 275/376 Installing : python3-sphinx-theme-alabaster-0.7.12-17.fc38.no 276/376 Installing : python3-sphinxcontrib-applehelp-1.0.2-11.fc38.no 277/376 Installing : python3-sphinxcontrib-devhelp-1.0.2-11.fc38.noar 278/376 Installing : python3-sphinxcontrib-htmlhelp-2.0.0-8.fc38.noar 279/376 Installing : python3-sphinxcontrib-jsmath-1.0.1-19.fc38.noarc 280/376 Installing : python3-sphinxcontrib-qthelp-1.0.3-12.fc38.noarc 281/376 Installing : python3-sphinxcontrib-serializinghtml-1.1.5-7.fc 282/376 Installing : gd-2.3.3-11.fc39.x86_64 283/376 Installing : libraqm-0.8.0-4.fc38.x86_64 284/376 Installing : python3-pillow-9.5.0-1.fc39.x86_64 285/376 Installing : python3-pillow-tk-9.5.0-1.fc39.x86_64 286/376 Installing : python3-matplotlib-tk-3.7.1-1.fc39.x86_64 287/376 Installing : python3-matplotlib-3.7.1-1.fc39.x86_64 288/376 Installing : python3-boututils-0.1.9-3.fc38.noarch 289/376 Installing : python3-mpmath-1.3.0-1.fc39.noarch 290/376 Installing : python3-sympy-1.11.1-4.fc39.x86_64 291/376 Installing : mkfontscale-1.2.2-3.fc38.x86_64 292/376 Installing : xorg-x11-fonts-ISO8859-1-100dpi-7.5-35.fc38.noar 293/376 Running scriptlet: xorg-x11-fonts-ISO8859-1-100dpi-7.5-35.fc38.noar 293/376 Installing : cairo-gobject-1.17.8-3.fc39.x86_64 294/376 Installing : librsvg2-2.56.0-1.fc39.x86_64 295/376 Installing : glibc-headers-x86-2.37.9000-5.fc39.noarch 296/376 Installing : libxcrypt-devel-4.4.33-7.fc39.x86_64 297/376 Installing : glibc-devel-2.37.9000-5.fc39.x86_64 298/376 Installing : gettext-envsubst-0.21.1-3.fc39.x86_64 299/376 Installing : gettext-runtime-0.21.1-3.fc39.x86_64 300/376 Installing : gettext-0.21.1-3.fc39.x86_64 301/376 Installing : gettext-common-devel-0.21.1-3.fc39.noarch 302/376 Installing : gc-8.2.2-3.fc38.x86_64 303/376 Installing : guile22-2.2.7-8.fc39.x86_64 304/376 Installing : make-1:4.4.1-1.fc39.x86_64 305/376 Installing : gcc-13.0.1-0.12.fc39.x86_64 306/376 Running scriptlet: gcc-13.0.1-0.12.fc39.x86_64 306/376 Installing : libquadmath-devel-13.0.1-0.12.fc39.x86_64 307/376 Installing : gcc-gfortran-13.0.1-0.12.fc39.x86_64 308/376 Installing : mpich-devel-4.0.3-1.fc39.x86_64 309/376 Installing : superlu_dist-mpich-1:8.1.1-3.fc39.x86_64 310/376 Installing : hypre-mpich-2.24.0-4.fc39.x86_64 311/376 Installing : petsc-mpich-3.17.4-15.fc39.x86_64 312/376 Installing : hdf5-mpich-devel-1.12.1-11.fc38.x86_64 313/376 Installing : hdf5-devel-1.12.1-11.fc38.x86_64 314/376 Installing : netcdf-devel-4.9.0-5.fc38.x86_64 315/376 Installing : emacs-filesystem-1:28.2-4.fc38.noarch 316/376 Installing : autoconf-2.71-5.fc38.noarch 317/376 Installing : dbus-libs-1:1.14.6-1.fc38.x86_64 318/376 Installing : avahi-libs-0.8-20.fc38.x86_64 319/376 Installing : cups-libs-1:2.4.2-11.fc39.x86_64 320/376 Installing : dbus-common-1:1.14.6-1.fc38.noarch 321/376 Running scriptlet: dbus-common-1:1.14.6-1.fc38.noarch 321/376 Running scriptlet: dbus-broker-33-1.fc38.x86_64 322/376 Installing : dbus-broker-33-1.fc38.x86_64 322/376 Running scriptlet: dbus-broker-33-1.fc38.x86_64 322/376 Installing : dbus-1:1.14.6-1.fc38.x86_64 323/376 Installing : device-mapper-libs-1.02.193-2.fc39.x86_64 324/376 Installing : cryptsetup-libs-2.6.1-1.fc39.x86_64 325/376 Installing : device-mapper-1.02.193-2.fc39.x86_64 326/376 Installing : systemd-pam-253.2-1.fc39.x86_64 327/376 Installing : systemd-253.2-1.fc39.x86_64 328/376 Running scriptlet: systemd-253.2-1.fc39.x86_64 328/376 Creating group 'input' with GID 104. Creating group 'kvm' with GID 36. Creating group 'render' with GID 105. Creating group 'sgx' with GID 106. Creating group 'systemd-journal' with GID 190. Creating group 'systemd-oom' with GID 999. Creating user 'systemd-oom' (systemd Userspace OOM Killer) with UID 999 and GID 999. Installing : systemd-udev-253.2-1.fc39.x86_64 329/376 Running scriptlet: systemd-udev-253.2-1.fc39.x86_64 329/376 ⚠️ /proc/ is not mounted. This is not a supported mode of operation. Please fix your invocation environment to mount /proc/ and /sys/ properly. Proceeding anyway. Your mileage may vary. Installing : infinipath-psm-3.3-26_g604758e_open.6.fc37.6.x86 330/376 Installing : libfabric-1.17.1-1.fc39.x86_64 331/376 Installing : openmpi-4.1.5-1.fc39.x86_64 332/376 Installing : ptscotch-openmpi-6.1.2-3.fc37.x86_64 333/376 Installing : hdf5-openmpi-1.12.1-11.fc38.x86_64 334/376 Installing : superlu_dist-openmpi-1:8.1.1-3.fc39.x86_64 335/376 Installing : hypre-openmpi-2.24.0-4.fc39.x86_64 336/376 Installing : openmpi-devel-4.1.5-1.fc39.x86_64 337/376 Installing : scalapack-openmpi-2.2.0-4.fc39.x86_64 338/376 Installing : MUMPS-openmpi-5.5.1-3.fc39.x86_64 339/376 Installing : petsc-openmpi-3.17.4-15.fc39.x86_64 340/376 Installing : hdf5-openmpi-devel-1.12.1-11.fc38.x86_64 341/376 Installing : python3-openmpi-4.1.5-1.fc39.x86_64 342/376 Installing : python3-mpi4py-openmpi-3.1.4-3.fc39.x86_64 343/376 Installing : clang-resource-filesystem-15.0.7-2.fc38.x86_64 344/376 Installing : clang-libs-15.0.7-2.fc38.x86_64 345/376 Installing : annobin-docs-12.01-1.fc39.noarch 346/376 Installing : adobe-mappings-pdf-20190401-3.fc38.noarch 347/376 Installing : libgs-10.01.0-1.fc39.x86_64 348/376 Installing : graphviz-8.0.1-1.fc39.x86_64 349/376 Running scriptlet: graphviz-8.0.1-1.fc39.x86_64 349/376 Installing : SuperLUMT-common-3.1.0-35.fc38.noarch 350/376 Installing : SuperLUMT64-double-3.1.0-35.fc38.x86_64 351/376 Installing : sundials-5.8.0-15.fc39.x86_64 352/376 Installing : sundials-mpich-5.8.0-15.fc39.x86_64 353/376 Installing : sundials-openmpi-5.8.0-15.fc39.x86_64 354/376 Installing : sundials-openmpi-devel-5.8.0-15.fc39.x86_64 355/376 Installing : sundials-mpich-devel-5.8.0-15.fc39.x86_64 356/376 Installing : sundials-devel-5.8.0-15.fc39.x86_64 357/376 Installing : doxygen-2:1.9.6-7.fc39.x86_64 358/376 Installing : python3-sphinx-1:5.3.0-4.fc39.noarch 359/376 Installing : annobin-plugin-gcc-12.01-1.fc39.x86_64 360/376 Running scriptlet: annobin-plugin-gcc-12.01-1.fc39.x86_64 360/376 Installing : python3-h5py-mpich-3.8.0-1.fc39.x86_64 361/376 Installing : python3-h5py-openmpi-3.8.0-1.fc39.x86_64 362/376 Installing : petsc-openmpi-devel-3.17.4-15.fc39.x86_64 363/376 Installing : autoconf-archive-2023.02.20-1.fc39.noarch 364/376 Installing : automake-1.16.5-12.fc39.noarch 365/376 Installing : netcdf-cxx4-devel-4.3.1-8.fc38.x86_64 366/376 Installing : petsc-mpich-devel-3.17.4-15.fc39.x86_64 367/376 Installing : gcc-c++-13.0.1-0.12.fc39.x86_64 368/376 Installing : gcc-plugin-annobin-13.0.1-0.12.fc39.x86_64 369/376 Running scriptlet: gcc-plugin-annobin-13.0.1-0.12.fc39.x86_64 369/376 Installing : gettext-devel-0.21.1-3.fc39.x86_64 370/376 Installing : python3-boutdata-0.1.9-2.fc38.noarch 371/376 Installing : python3-tables-3.7.0-7.fc38.x86_64 372/376 Installing : flexiblas-devel-3.3.1-1.fc39.x86_64 373/376 Installing : fftw-devel-3.3.10-7.fc39.x86_64 374/376 Installing : mpark-variant-devel-1.4.0-9.fc38.x86_64 375/376 Installing : systemd-rpm-macros-253.2-1.fc39.noarch 376/376 Running scriptlet: urw-base35-bookman-fonts-20200910-16.fc38.noarch 376/376 Running scriptlet: urw-base35-c059-fonts-20200910-16.fc38.noarch 376/376 Running scriptlet: urw-base35-d050000l-fonts-20200910-16.fc38.noarc 376/376 Running scriptlet: urw-base35-gothic-fonts-20200910-16.fc38.noarch 376/376 Running scriptlet: urw-base35-nimbus-mono-ps-fonts-20200910-16.fc38 376/376 Running scriptlet: urw-base35-nimbus-roman-fonts-20200910-16.fc38.n 376/376 Running scriptlet: urw-base35-nimbus-sans-fonts-20200910-16.fc38.no 376/376 Running scriptlet: urw-base35-p052-fonts-20200910-16.fc38.noarch 376/376 Running scriptlet: urw-base35-standard-symbols-ps-fonts-20200910-16 376/376 Running scriptlet: urw-base35-z003-fonts-20200910-16.fc38.noarch 376/376 Running scriptlet: fontconfig-2.14.2-2.fc39.x86_64 376/376 Running scriptlet: crypto-policies-scripts-20230301-1.gita12f7b2.fc 376/376 Running scriptlet: nss-3.88.1-2.fc39.x86_64 376/376 Running scriptlet: systemd-rpm-macros-253.2-1.fc39.noarch 376/376 Creating group 'systemd-coredump' with GID 998. Creating user 'systemd-coredump' (systemd Core Dumper) with UID 998 and GID 998. Creating group 'systemd-timesync' with GID 997. Creating user 'systemd-timesync' (systemd Time Synchronization) with UID 997 and GID 997. Verifying : python3-Cython-3.0.0~b2-1.fc39.x86_64 1/376 Verifying : MUMPS-common-5.5.1-3.fc39.noarch 2/376 Verifying : MUMPS-mpich-5.5.1-3.fc39.x86_64 3/376 Verifying : MUMPS-openmpi-5.5.1-3.fc39.x86_64 4/376 Verifying : SuperLUMT-common-3.1.0-35.fc38.noarch 5/376 Verifying : SuperLUMT64-double-3.1.0-35.fc38.x86_64 6/376 Verifying : adobe-mappings-cmap-20230118-1.fc38.noarch 7/376 Verifying : adobe-mappings-cmap-deprecated-20230118-1.fc38.n 8/376 Verifying : adobe-mappings-pdf-20190401-3.fc38.noarch 9/376 Verifying : annobin-docs-12.01-1.fc39.noarch 10/376 Verifying : annobin-plugin-gcc-12.01-1.fc39.x86_64 11/376 Verifying : autoconf-2.71-5.fc38.noarch 12/376 Verifying : autoconf-archive-2023.02.20-1.fc39.noarch 13/376 Verifying : automake-1.16.5-12.fc39.noarch 14/376 Verifying : avahi-libs-0.8-20.fc38.x86_64 15/376 Verifying : blosc-1.21.2-2.fc38.x86_64 16/376 Verifying : cairo-1.17.8-3.fc39.x86_64 17/376 Verifying : cairo-gobject-1.17.8-3.fc39.x86_64 18/376 Verifying : cgnslib-libs-4.3.0-7.fc38.x86_64 19/376 Verifying : clang-libs-15.0.7-2.fc38.x86_64 20/376 Verifying : clang-resource-filesystem-15.0.7-2.fc38.x86_64 21/376 Verifying : cmake-filesystem-3.26.2-1.fc39.x86_64 22/376 Verifying : cpp-13.0.1-0.12.fc39.x86_64 23/376 Verifying : crypto-policies-scripts-20230301-1.gita12f7b2.fc 24/376 Verifying : cryptsetup-libs-2.6.1-1.fc39.x86_64 25/376 Verifying : cups-libs-1:2.4.2-11.fc39.x86_64 26/376 Verifying : dbus-1:1.14.6-1.fc38.x86_64 27/376 Verifying : dbus-broker-33-1.fc38.x86_64 28/376 Verifying : dbus-common-1:1.14.6-1.fc38.noarch 29/376 Verifying : dbus-libs-1:1.14.6-1.fc38.x86_64 30/376 Verifying : dejavu-sans-fonts-2.37-20.fc38.noarch 31/376 Verifying : device-mapper-1.02.193-2.fc39.x86_64 32/376 Verifying : device-mapper-libs-1.02.193-2.fc39.x86_64 33/376 Verifying : doxygen-2:1.9.6-7.fc39.x86_64 34/376 Verifying : emacs-filesystem-1:28.2-4.fc38.noarch 35/376 Verifying : environment-modules-5.2.0-2.fc38.x86_64 36/376 Verifying : expat-2.5.0-2.fc38.x86_64 37/376 Verifying : fftw-3.3.10-7.fc39.x86_64 38/376 Verifying : fftw-devel-3.3.10-7.fc39.x86_64 39/376 Verifying : fftw-libs-3.3.10-7.fc39.x86_64 40/376 Verifying : fftw-libs-double-3.3.10-7.fc39.x86_64 41/376 Verifying : fftw-libs-long-3.3.10-7.fc39.x86_64 42/376 Verifying : fftw-libs-quad-3.3.10-7.fc39.x86_64 43/376 Verifying : fftw-libs-single-3.3.10-7.fc39.x86_64 44/376 Verifying : flexiblas-3.3.1-1.fc39.x86_64 45/376 Verifying : flexiblas-devel-3.3.1-1.fc39.x86_64 46/376 Verifying : flexiblas-netlib-3.3.1-1.fc39.x86_64 47/376 Verifying : flexiblas-netlib64-3.3.1-1.fc39.x86_64 48/376 Verifying : flexiblas-openblas-openmp-3.3.1-1.fc39.x86_64 49/376 Verifying : flexiblas-openblas-openmp64-3.3.1-1.fc39.x86_64 50/376 Verifying : fontconfig-2.14.2-2.fc39.x86_64 51/376 Verifying : fonts-filesystem-1:2.0.5-11.fc38.noarch 52/376 Verifying : freetype-2.13.0-1.fc39.x86_64 53/376 Verifying : fribidi-1.0.12-4.fc39.x86_64 54/376 Verifying : gc-8.2.2-3.fc38.x86_64 55/376 Verifying : gcc-13.0.1-0.12.fc39.x86_64 56/376 Verifying : gcc-c++-13.0.1-0.12.fc39.x86_64 57/376 Verifying : gcc-gfortran-13.0.1-0.12.fc39.x86_64 58/376 Verifying : gcc-plugin-annobin-13.0.1-0.12.fc39.x86_64 59/376 Verifying : gd-2.3.3-11.fc39.x86_64 60/376 Verifying : gdk-pixbuf2-2.42.10-2.fc38.x86_64 61/376 Verifying : gettext-0.21.1-3.fc39.x86_64 62/376 Verifying : gettext-common-devel-0.21.1-3.fc39.noarch 63/376 Verifying : gettext-devel-0.21.1-3.fc39.x86_64 64/376 Verifying : gettext-envsubst-0.21.1-3.fc39.x86_64 65/376 Verifying : gettext-libs-0.21.1-3.fc39.x86_64 66/376 Verifying : gettext-runtime-0.21.1-3.fc39.x86_64 67/376 Verifying : glib2-2.76.1-1.fc39.x86_64 68/376 Verifying : glibc-devel-2.37.9000-5.fc39.x86_64 69/376 Verifying : glibc-headers-x86-2.37.9000-5.fc39.noarch 70/376 Verifying : gnutls-3.8.0-3.fc39.x86_64 71/376 Verifying : google-droid-sans-fonts-20200215-14.fc38.noarch 72/376 Verifying : google-noto-fonts-common-20230201-1.fc38.noarch 73/376 Verifying : google-noto-sans-vf-fonts-20230201-1.fc38.noarch 74/376 Verifying : graphite2-1.3.14-11.fc38.x86_64 75/376 Verifying : graphviz-8.0.1-1.fc39.x86_64 76/376 Verifying : groff-base-1.22.4-11.fc38.x86_64 77/376 Verifying : gts-0.7.6-44.20121130.fc38.x86_64 78/376 Verifying : guile22-2.2.7-8.fc39.x86_64 79/376 Verifying : harfbuzz-7.1.0-1.fc39.x86_64 80/376 Verifying : hdf-libs-4.2.15-12.fc38.x86_64 81/376 Verifying : hdf5-1.12.1-11.fc38.x86_64 82/376 Verifying : hdf5-devel-1.12.1-11.fc38.x86_64 83/376 Verifying : hdf5-mpich-1.12.1-11.fc38.x86_64 84/376 Verifying : hdf5-mpich-devel-1.12.1-11.fc38.x86_64 85/376 Verifying : hdf5-openmpi-1.12.1-11.fc38.x86_64 86/376 Verifying : hdf5-openmpi-devel-1.12.1-11.fc38.x86_64 87/376 Verifying : highway-1.0.4-1.fc39.x86_64 88/376 Verifying : hwloc-libs-2.9.0-6.fc39.x86_64 89/376 Verifying : hypre-mpich-2.24.0-4.fc39.x86_64 90/376 Verifying : hypre-openmpi-2.24.0-4.fc39.x86_64 91/376 Verifying : infinipath-psm-3.3-26_g604758e_open.6.fc37.6.x86 92/376 Verifying : jbig2dec-libs-0.19-8.fc38.x86_64 93/376 Verifying : jbigkit-libs-2.1-25.fc38.x86_64 94/376 Verifying : json-c-0.16-4.fc38.x86_64 95/376 Verifying : kbd-2.5.1-5.fc39.x86_64 96/376 Verifying : kbd-legacy-2.5.1-5.fc39.noarch 97/376 Verifying : kbd-misc-2.5.1-5.fc39.noarch 98/376 Verifying : kernel-headers-6.3.0-0.rc5.git0.1.fc39.x86_64 99/376 Verifying : kmod-30-4.fc38.x86_64 100/376 Verifying : kmod-libs-30-4.fc38.x86_64 101/376 Verifying : langpacks-core-font-en-3.0-31.fc38.noarch 102/376 Verifying : lasi-1.1.3-10.fc38.x86_64 103/376 Verifying : lcms2-2.15-1.fc39.x86_64 104/376 Verifying : less-608-2.fc38.x86_64 105/376 Verifying : libICE-1.0.10-10.fc38.x86_64 106/376 Verifying : libSM-1.2.3-12.fc38.x86_64 107/376 Verifying : libX11-1.8.4-1.fc38.x86_64 108/376 Verifying : libX11-common-1.8.4-1.fc38.noarch 109/376 Verifying : libXau-1.0.11-2.fc38.x86_64 110/376 Verifying : libXext-1.3.5-2.fc38.x86_64 111/376 Verifying : libXft-2.3.6-2.fc38.x86_64 112/376 Verifying : libXpm-3.5.15-3.fc38.x86_64 113/376 Verifying : libXrender-0.9.11-2.fc38.x86_64 114/376 Verifying : libXt-1.2.1-4.fc38.x86_64 115/376 Verifying : libaec-1.0.6-4.fc38.x86_64 116/376 Verifying : libaec-devel-1.0.6-4.fc38.x86_64 117/376 Verifying : libaom-3.6.0-1.fc39.x86_64 118/376 Verifying : libargon2-20190702-2.fc38.x86_64 119/376 Verifying : libavif-0.11.1-9.fc39.x86_64 120/376 Verifying : libb2-0.98.1-8.fc38.x86_64 121/376 Verifying : libcbor-0.10.2-1.fc39.x86_64 122/376 Verifying : libcurl-devel-8.0.1-2.fc39.x86_64 123/376 Verifying : libdatrie-0.2.13-5.fc38.x86_64 124/376 Verifying : libdav1d-1.1.0-1.fc39.x86_64 125/376 Verifying : libedit-3.1-45.20221030cvs.fc38.x86_64 126/376 Verifying : libfabric-1.17.1-1.fc39.x86_64 127/376 Verifying : libfido2-1.13.0-2.fc39.x86_64 128/376 Verifying : libfontenc-1.1.6-2.fc38.x86_64 129/376 Verifying : libgfortran-13.0.1-0.12.fc39.x86_64 130/376 Verifying : libgs-10.01.0-1.fc39.x86_64 131/376 Verifying : libibumad-44.0-3.fc38.x86_64 132/376 Verifying : libibverbs-44.0-3.fc38.x86_64 133/376 Verifying : libijs-0.35-17.fc38.x86_64 134/376 Verifying : libimagequant-4.0.1-4.fc39.x86_64 135/376 Verifying : libjpeg-turbo-2.1.4-2.fc38.x86_64 136/376 Verifying : libjxl-1:0.7.0-6.fc38.x86_64 137/376 Verifying : liblzf-3.6-25.fc38.x86_64 138/376 Verifying : libmpc-1.3.1-2.fc38.x86_64 139/376 Verifying : libnl3-3.7.0-3.fc38.x86_64 140/376 Verifying : libpaper-1:2.0.10-1.fc39.x86_64 141/376 Verifying : libpipeline-1.5.7-2.fc38.x86_64 142/376 Verifying : libpng-2:1.6.37-14.fc38.x86_64 143/376 Verifying : libpsm2-11.2.230-1.fc38.x86_64 144/376 Verifying : libqhull_r-1:7.2.1-12.fc38.x86_64 145/376 Verifying : libquadmath-13.0.1-0.12.fc39.x86_64 146/376 Verifying : libquadmath-devel-13.0.1-0.12.fc39.x86_64 147/376 Verifying : libraqm-0.8.0-4.fc38.x86_64 148/376 Verifying : librdmacm-44.0-3.fc38.x86_64 149/376 Verifying : librsvg2-2.56.0-1.fc39.x86_64 150/376 Verifying : libseccomp-2.5.3-4.fc38.x86_64 151/376 Verifying : libstdc++-devel-13.0.1-0.12.fc39.x86_64 152/376 Verifying : libthai-0.1.29-4.fc38.x86_64 153/376 Verifying : libtiff-4.4.0-5.fc38.x86_64 154/376 Verifying : libtool-ltdl-2.4.7-6.fc38.x86_64 155/376 Verifying : libunistring-1.1-3.fc38.x86_64 156/376 Verifying : libvmaf-2.3.0-5.fc38.x86_64 157/376 Verifying : libwebp-1.3.0-2.fc38.x86_64 158/376 Verifying : libxcb-1.13.1-11.fc38.x86_64 159/376 Verifying : libxcrypt-devel-4.4.33-7.fc39.x86_64 160/376 Verifying : libxslt-1.1.37-3.fc39.x86_64 161/376 Verifying : llvm-libs-15.0.7-2.fc38.x86_64 162/376 Verifying : lzo-2.10-8.fc38.x86_64 163/376 Verifying : m4-1.4.19-4.fc37.x86_64 164/376 Verifying : make-1:4.4.1-1.fc39.x86_64 165/376 Verifying : man-db-2.11.2-2.fc38.x86_64 166/376 Verifying : metis-5.1.0-34.fc38.x86_64 167/376 Verifying : mkfontscale-1.2.2-3.fc38.x86_64 168/376 Verifying : mpark-variant-devel-1.4.0-9.fc38.x86_64 169/376 Verifying : mpdecimal-2.5.1-6.fc38.x86_64 170/376 Verifying : mpi4py-common-3.1.4-3.fc39.noarch 171/376 Verifying : mpich-4.0.3-1.fc39.x86_64 172/376 Verifying : mpich-devel-4.0.3-1.fc39.x86_64 173/376 Verifying : munge-libs-0.5.15-4.fc38.x86_64 174/376 Verifying : ncurses-6.4-3.20230114.fc38.x86_64 175/376 Verifying : netcdf-4.9.0-5.fc38.x86_64 176/376 Verifying : netcdf-cxx4-4.3.1-8.fc38.x86_64 177/376 Verifying : netcdf-cxx4-devel-4.3.1-8.fc38.x86_64 178/376 Verifying : netcdf-devel-4.9.0-5.fc38.x86_64 179/376 Verifying : netpbm-11.02.00-1.fc39.x86_64 180/376 Verifying : nettle-3.8-3.fc38.x86_64 181/376 Verifying : nspr-4.35.0-5.fc39.x86_64 182/376 Verifying : nss-3.88.1-2.fc39.x86_64 183/376 Verifying : nss-softokn-3.88.1-2.fc39.x86_64 184/376 Verifying : nss-softokn-freebl-3.88.1-2.fc39.x86_64 185/376 Verifying : nss-sysinit-3.88.1-2.fc39.x86_64 186/376 Verifying : nss-util-3.88.1-2.fc39.x86_64 187/376 Verifying : numactl-libs-2.0.16-2.fc38.x86_64 188/376 Verifying : openblas-0.3.21-4.fc38.x86_64 189/376 Verifying : openblas-openmp-0.3.21-4.fc38.x86_64 190/376 Verifying : openblas-openmp64-0.3.21-4.fc38.x86_64 191/376 Verifying : openjpeg2-2.5.0-3.fc38.x86_64 192/376 Verifying : openmpi-4.1.5-1.fc39.x86_64 193/376 Verifying : openmpi-devel-4.1.5-1.fc39.x86_64 194/376 Verifying : opensm-libs-3.3.24-5.fc38.x86_64 195/376 Verifying : openssh-9.0p1-14.fc39.1.x86_64 196/376 Verifying : openssh-clients-9.0p1-14.fc39.1.x86_64 197/376 Verifying : orangefs-2.9.8-8.fc38.x86_64 198/376 Verifying : pango-1.50.14-1.fc39.x86_64 199/376 Verifying : perl-B-1.83-495.fc38.x86_64 200/376 Verifying : perl-Carp-1.52-490.fc38.noarch 201/376 Verifying : perl-Class-Struct-0.66-495.fc38.noarch 202/376 Verifying : perl-Data-Dumper-2.184-491.fc38.x86_64 203/376 Verifying : perl-DynaLoader-1.52-495.fc38.x86_64 204/376 Verifying : perl-Encode-4:3.19-493.fc38.x86_64 205/376 Verifying : perl-Errno-1.36-495.fc38.x86_64 206/376 Verifying : perl-Exporter-5.77-490.fc38.noarch 207/376 Verifying : perl-Fcntl-1.15-495.fc38.x86_64 208/376 Verifying : perl-File-Basename-2.85-495.fc38.noarch 209/376 Verifying : perl-File-Compare-1.100.700-495.fc38.noarch 210/376 Verifying : perl-File-Copy-2.39-495.fc38.noarch 211/376 Verifying : perl-File-Find-1.40-495.fc38.noarch 212/376 Verifying : perl-File-Path-2.18-490.fc38.noarch 213/376 Verifying : perl-File-Temp-1:0.231.100-490.fc38.noarch 214/376 Verifying : perl-File-stat-1.12-495.fc38.noarch 215/376 Verifying : perl-Getopt-Long-1:2.54-2.fc38.noarch 216/376 Verifying : perl-Getopt-Std-1.13-495.fc38.noarch 217/376 Verifying : perl-HTTP-Tiny-0.082-2.fc38.noarch 218/376 Verifying : perl-IO-1.50-495.fc38.x86_64 219/376 Verifying : perl-IPC-Open3-1.22-495.fc38.noarch 220/376 Verifying : perl-MIME-Base64-3.16-490.fc38.x86_64 221/376 Verifying : perl-POSIX-2.03-495.fc38.x86_64 222/376 Verifying : perl-PathTools-3.84-490.fc38.x86_64 223/376 Verifying : perl-Pod-Escapes-1:1.07-490.fc38.noarch 224/376 Verifying : perl-Pod-Perldoc-3.28.01-491.fc38.noarch 225/376 Verifying : perl-Pod-Simple-1:3.43-491.fc38.noarch 226/376 Verifying : perl-Pod-Usage-4:2.03-4.fc38.noarch 227/376 Verifying : perl-Scalar-List-Utils-5:1.63-490.fc38.x86_64 228/376 Verifying : perl-SelectSaver-1.02-495.fc38.noarch 229/376 Verifying : perl-Socket-4:2.036-2.fc38.x86_64 230/376 Verifying : perl-Storable-1:3.26-490.fc38.x86_64 231/376 Verifying : perl-Symbol-1.09-495.fc38.noarch 232/376 Verifying : perl-Term-ANSIColor-5.01-491.fc38.noarch 233/376 Verifying : perl-Term-Cap-1.18-1.fc39.noarch 234/376 Verifying : perl-Text-ParseWords-3.31-490.fc38.noarch 235/376 Verifying : perl-Text-Tabs+Wrap-2021.0814-490.fc38.noarch 236/376 Verifying : perl-Thread-Queue-3.14-490.fc38.noarch 237/376 Verifying : perl-Time-Local-2:1.300-490.fc38.noarch 238/376 Verifying : perl-constant-1.33-491.fc38.noarch 239/376 Verifying : perl-if-0.61.000-495.fc38.noarch 240/376 Verifying : perl-interpreter-4:5.36.0-495.fc38.x86_64 241/376 Verifying : perl-libs-4:5.36.0-495.fc38.x86_64 242/376 Verifying : perl-mro-1.26-495.fc38.x86_64 243/376 Verifying : perl-overload-1.35-495.fc38.noarch 244/376 Verifying : perl-overloading-0.02-495.fc38.noarch 245/376 Verifying : perl-parent-1:0.241-1.fc39.noarch 246/376 Verifying : perl-podlators-1:5.01-2.fc38.noarch 247/376 Verifying : perl-threads-1:2.27-490.fc38.x86_64 248/376 Verifying : perl-threads-shared-1.64-490.fc38.x86_64 249/376 Verifying : perl-vars-1.05-495.fc38.noarch 250/376 Verifying : petsc-mpich-3.17.4-15.fc39.x86_64 251/376 Verifying : petsc-mpich-devel-3.17.4-15.fc39.x86_64 252/376 Verifying : petsc-openmpi-3.17.4-15.fc39.x86_64 253/376 Verifying : petsc-openmpi-devel-3.17.4-15.fc39.x86_64 254/376 Verifying : pixman-0.42.2-1.fc39.x86_64 255/376 Verifying : pmix-4.1.2-4.fc38.x86_64 256/376 Verifying : poppler-23.02.0-1.fc38.x86_64 257/376 Verifying : poppler-data-0.4.11-4.fc38.noarch 258/376 Verifying : poppler-glib-23.02.0-1.fc38.x86_64 259/376 Verifying : procps-ng-3.3.17-9.fc38.x86_64 260/376 Verifying : ptscotch-mpich-6.1.2-3.fc37.x86_64 261/376 Verifying : ptscotch-openmpi-6.1.2-3.fc37.x86_64 262/376 Verifying : pyproject-rpm-macros-1.6.3-1.fc39.noarch 263/376 Verifying : python-pip-wheel-23.0.1-2.fc39.noarch 264/376 Verifying : python-rpm-macros-3.11-10.fc39.noarch 265/376 Verifying : python-setuptools-wheel-65.5.1-2.fc38.noarch 266/376 Verifying : python3-3.11.2-1.fc39.x86_64 267/376 Verifying : python3-appdirs-1.4.4-8.fc38.noarch 268/376 Verifying : python3-babel-2.12.1-1.fc39.noarch 269/376 Verifying : python3-boutdata-0.1.9-2.fc38.noarch 270/376 Verifying : python3-boututils-0.1.9-3.fc38.noarch 271/376 Verifying : python3-brotli-1.0.9-11.fc38.x86_64 272/376 Verifying : python3-cached_property-1.5.2-9.fc38.noarch 273/376 Verifying : python3-cairo-1.23.0-2.fc38.x86_64 274/376 Verifying : python3-cftime-1.6.1-2.fc38.x86_64 275/376 Verifying : python3-charset-normalizer-3.1.0-1.fc39.noarch 276/376 Verifying : python3-contourpy-1.0.7-2.fc38.x86_64 277/376 Verifying : python3-cycler-0.11.0-7.fc38.noarch 278/376 Verifying : python3-dateutil-1:2.8.2-6.fc39.noarch 279/376 Verifying : python3-devel-3.11.2-1.fc39.x86_64 280/376 Verifying : python3-docutils-0.19-2.fc38.noarch 281/376 Verifying : python3-fonttools-4.39.3-1.fc39.x86_64 282/376 Verifying : python3-fs-2.4.16-1.fc39.noarch 283/376 Verifying : python3-h5py-mpich-3.8.0-1.fc39.x86_64 284/376 Verifying : python3-h5py-openmpi-3.8.0-1.fc39.x86_64 285/376 Verifying : python3-idna-3.4-2.fc38.noarch 286/376 Verifying : python3-imagesize-1.4.1-2.fc38.noarch 287/376 Verifying : python3-jinja2-3.0.3-7.fc38.noarch 288/376 Verifying : python3-kiwisolver-1.4.4-7.fc38.x86_64 289/376 Verifying : python3-libs-3.11.2-1.fc39.x86_64 290/376 Verifying : python3-lxml-4.9.2-2.fc38.x86_64 291/376 Verifying : python3-markupsafe-2.1.2-1.fc38.x86_64 292/376 Verifying : python3-matplotlib-3.7.1-1.fc39.x86_64 293/376 Verifying : python3-matplotlib-data-3.7.1-1.fc39.noarch 294/376 Verifying : python3-matplotlib-data-fonts-3.7.1-1.fc39.noarc 295/376 Verifying : python3-matplotlib-tk-3.7.1-1.fc39.x86_64 296/376 Verifying : python3-mpi4py-mpich-3.1.4-3.fc39.x86_64 297/376 Verifying : python3-mpi4py-openmpi-3.1.4-3.fc39.x86_64 298/376 Verifying : python3-mpich-4.0.3-1.fc39.x86_64 299/376 Verifying : python3-mpmath-1.3.0-1.fc39.noarch 300/376 Verifying : python3-munkres-1.1.2-14.fc38.noarch 301/376 Verifying : python3-netcdf4-1.6.3-1.fc39.x86_64 302/376 Verifying : python3-numexpr-2.8.4-1.fc38.x86_64 303/376 Verifying : python3-numpy-1:1.24.1-3.fc39.x86_64 304/376 Verifying : python3-numpy-f2py-1:1.24.1-3.fc39.x86_64 305/376 Verifying : python3-olefile-0.46-19.fc38.noarch 306/376 Verifying : python3-openmpi-4.1.5-1.fc39.x86_64 307/376 Verifying : python3-packaging-23.0-1.fc38.noarch 308/376 Verifying : python3-pillow-9.5.0-1.fc39.x86_64 309/376 Verifying : python3-pillow-tk-9.5.0-1.fc39.x86_64 310/376 Verifying : python3-pygments-2.14.0-1.fc39.noarch 311/376 Verifying : python3-pyparsing-3.0.9-3.fc38.noarch 312/376 Verifying : python3-pysocks-1.7.1-17.fc39.noarch 313/376 Verifying : python3-requests-2.28.2-1.fc38.noarch 314/376 Verifying : python3-rpm-generators-14-3.fc39.noarch 315/376 Verifying : python3-rpm-macros-3.11-10.fc39.noarch 316/376 Verifying : python3-scipy-1.10.1-2.fc39.x86_64 317/376 Verifying : python3-setuptools-65.5.1-2.fc38.noarch 318/376 Verifying : python3-six-1.16.0-9.fc38.noarch 319/376 Verifying : python3-snowballstemmer-2.2.0-5.fc38.noarch 320/376 Verifying : python3-sphinx-1:5.3.0-4.fc39.noarch 321/376 Verifying : python3-sphinx-theme-alabaster-0.7.12-17.fc38.no 322/376 Verifying : python3-sphinxcontrib-applehelp-1.0.2-11.fc38.no 323/376 Verifying : python3-sphinxcontrib-devhelp-1.0.2-11.fc38.noar 324/376 Verifying : python3-sphinxcontrib-htmlhelp-2.0.0-8.fc38.noar 325/376 Verifying : python3-sphinxcontrib-jsmath-1.0.1-19.fc38.noarc 326/376 Verifying : python3-sphinxcontrib-qthelp-1.0.3-12.fc38.noarc 327/376 Verifying : python3-sphinxcontrib-serializinghtml-1.1.5-7.fc 328/376 Verifying : python3-sympy-1.11.1-4.fc39.x86_64 329/376 Verifying : python3-tables-3.7.0-7.fc38.x86_64 330/376 Verifying : python3-tkinter-3.11.2-1.fc39.x86_64 331/376 Verifying : python3-urllib3-1.26.12-2.fc38.noarch 332/376 Verifying : rav1e-libs-0.5.1-9.fc39.x86_64 333/376 Verifying : rpm-mpi-hooks-8-5.fc38.noarch 334/376 Verifying : scalapack-common-2.2.0-4.fc39.x86_64 335/376 Verifying : scalapack-mpich-2.2.0-4.fc39.x86_64 336/376 Verifying : scalapack-openmpi-2.2.0-4.fc39.x86_64 337/376 Verifying : scotch-6.1.2-3.fc37.x86_64 338/376 Verifying : shared-mime-info-2.2-3.fc38.x86_64 339/376 Verifying : snappy-1.1.10-1.fc39.x86_64 340/376 Verifying : suitesparse-5.13.0-2.fc38.x86_64 341/376 Verifying : suitesparse64-5.13.0-2.fc38.x86_64 342/376 Verifying : sundials-5.8.0-15.fc39.x86_64 343/376 Verifying : sundials-devel-5.8.0-15.fc39.x86_64 344/376 Verifying : sundials-mpich-5.8.0-15.fc39.x86_64 345/376 Verifying : sundials-mpich-devel-5.8.0-15.fc39.x86_64 346/376 Verifying : sundials-openmpi-5.8.0-15.fc39.x86_64 347/376 Verifying : sundials-openmpi-devel-5.8.0-15.fc39.x86_64 348/376 Verifying : superlu_dist-mpich-1:8.1.1-3.fc39.x86_64 349/376 Verifying : superlu_dist-openmpi-1:8.1.1-3.fc39.x86_64 350/376 Verifying : svt-av1-libs-1.4.1-2.fc38.x86_64 351/376 Verifying : systemd-253.2-1.fc39.x86_64 352/376 Verifying : systemd-pam-253.2-1.fc39.x86_64 353/376 Verifying : systemd-rpm-macros-253.2-1.fc39.noarch 354/376 Verifying : systemd-udev-253.2-1.fc39.x86_64 355/376 Verifying : tcl-1:8.6.12-4.fc38.x86_64 356/376 Verifying : tcsh-6.24.07-2.fc38.x86_64 357/376 Verifying : tk-1:8.6.12-4.fc38.x86_64 358/376 Verifying : ucx-1.13.1-4.fc39.x86_64 359/376 Verifying : urw-base35-bookman-fonts-20200910-16.fc38.noarch 360/376 Verifying : urw-base35-c059-fonts-20200910-16.fc38.noarch 361/376 Verifying : urw-base35-d050000l-fonts-20200910-16.fc38.noarc 362/376 Verifying : urw-base35-fonts-20200910-16.fc38.noarch 363/376 Verifying : urw-base35-fonts-common-20200910-16.fc38.noarch 364/376 Verifying : urw-base35-gothic-fonts-20200910-16.fc38.noarch 365/376 Verifying : urw-base35-nimbus-mono-ps-fonts-20200910-16.fc38 366/376 Verifying : urw-base35-nimbus-roman-fonts-20200910-16.fc38.n 367/376 Verifying : urw-base35-nimbus-sans-fonts-20200910-16.fc38.no 368/376 Verifying : urw-base35-p052-fonts-20200910-16.fc38.noarch 369/376 Verifying : urw-base35-standard-symbols-ps-fonts-20200910-16 370/376 Verifying : urw-base35-z003-fonts-20200910-16.fc38.noarch 371/376 Verifying : vim-filesystem-2:9.0.1429-1.fc39.noarch 372/376 Verifying : xapian-core-libs-1.4.20-3.fc39.x86_64 373/376 Verifying : xml-common-0.6.3-60.fc38.noarch 374/376 Verifying : xorg-x11-fonts-ISO8859-1-100dpi-7.5-35.fc38.noar 375/376 Verifying : zlib-devel-1.2.13-3.fc38.x86_64 376/376 Installed: MUMPS-common-5.5.1-3.fc39.noarch MUMPS-mpich-5.5.1-3.fc39.x86_64 MUMPS-openmpi-5.5.1-3.fc39.x86_64 SuperLUMT-common-3.1.0-35.fc38.noarch SuperLUMT64-double-3.1.0-35.fc38.x86_64 adobe-mappings-cmap-20230118-1.fc38.noarch adobe-mappings-cmap-deprecated-20230118-1.fc38.noarch adobe-mappings-pdf-20190401-3.fc38.noarch annobin-docs-12.01-1.fc39.noarch annobin-plugin-gcc-12.01-1.fc39.x86_64 autoconf-2.71-5.fc38.noarch autoconf-archive-2023.02.20-1.fc39.noarch automake-1.16.5-12.fc39.noarch avahi-libs-0.8-20.fc38.x86_64 blosc-1.21.2-2.fc38.x86_64 cairo-1.17.8-3.fc39.x86_64 cairo-gobject-1.17.8-3.fc39.x86_64 cgnslib-libs-4.3.0-7.fc38.x86_64 clang-libs-15.0.7-2.fc38.x86_64 clang-resource-filesystem-15.0.7-2.fc38.x86_64 cmake-filesystem-3.26.2-1.fc39.x86_64 cpp-13.0.1-0.12.fc39.x86_64 crypto-policies-scripts-20230301-1.gita12f7b2.fc39.noarch cryptsetup-libs-2.6.1-1.fc39.x86_64 cups-libs-1:2.4.2-11.fc39.x86_64 dbus-1:1.14.6-1.fc38.x86_64 dbus-broker-33-1.fc38.x86_64 dbus-common-1:1.14.6-1.fc38.noarch dbus-libs-1:1.14.6-1.fc38.x86_64 dejavu-sans-fonts-2.37-20.fc38.noarch device-mapper-1.02.193-2.fc39.x86_64 device-mapper-libs-1.02.193-2.fc39.x86_64 doxygen-2:1.9.6-7.fc39.x86_64 emacs-filesystem-1:28.2-4.fc38.noarch environment-modules-5.2.0-2.fc38.x86_64 expat-2.5.0-2.fc38.x86_64 fftw-3.3.10-7.fc39.x86_64 fftw-devel-3.3.10-7.fc39.x86_64 fftw-libs-3.3.10-7.fc39.x86_64 fftw-libs-double-3.3.10-7.fc39.x86_64 fftw-libs-long-3.3.10-7.fc39.x86_64 fftw-libs-quad-3.3.10-7.fc39.x86_64 fftw-libs-single-3.3.10-7.fc39.x86_64 flexiblas-3.3.1-1.fc39.x86_64 flexiblas-devel-3.3.1-1.fc39.x86_64 flexiblas-netlib-3.3.1-1.fc39.x86_64 flexiblas-netlib64-3.3.1-1.fc39.x86_64 flexiblas-openblas-openmp-3.3.1-1.fc39.x86_64 flexiblas-openblas-openmp64-3.3.1-1.fc39.x86_64 fontconfig-2.14.2-2.fc39.x86_64 fonts-filesystem-1:2.0.5-11.fc38.noarch freetype-2.13.0-1.fc39.x86_64 fribidi-1.0.12-4.fc39.x86_64 gc-8.2.2-3.fc38.x86_64 gcc-13.0.1-0.12.fc39.x86_64 gcc-c++-13.0.1-0.12.fc39.x86_64 gcc-gfortran-13.0.1-0.12.fc39.x86_64 gcc-plugin-annobin-13.0.1-0.12.fc39.x86_64 gd-2.3.3-11.fc39.x86_64 gdk-pixbuf2-2.42.10-2.fc38.x86_64 gettext-0.21.1-3.fc39.x86_64 gettext-common-devel-0.21.1-3.fc39.noarch gettext-devel-0.21.1-3.fc39.x86_64 gettext-envsubst-0.21.1-3.fc39.x86_64 gettext-libs-0.21.1-3.fc39.x86_64 gettext-runtime-0.21.1-3.fc39.x86_64 glib2-2.76.1-1.fc39.x86_64 glibc-devel-2.37.9000-5.fc39.x86_64 glibc-headers-x86-2.37.9000-5.fc39.noarch gnutls-3.8.0-3.fc39.x86_64 google-droid-sans-fonts-20200215-14.fc38.noarch google-noto-fonts-common-20230201-1.fc38.noarch google-noto-sans-vf-fonts-20230201-1.fc38.noarch graphite2-1.3.14-11.fc38.x86_64 graphviz-8.0.1-1.fc39.x86_64 groff-base-1.22.4-11.fc38.x86_64 gts-0.7.6-44.20121130.fc38.x86_64 guile22-2.2.7-8.fc39.x86_64 harfbuzz-7.1.0-1.fc39.x86_64 hdf-libs-4.2.15-12.fc38.x86_64 hdf5-1.12.1-11.fc38.x86_64 hdf5-devel-1.12.1-11.fc38.x86_64 hdf5-mpich-1.12.1-11.fc38.x86_64 hdf5-mpich-devel-1.12.1-11.fc38.x86_64 hdf5-openmpi-1.12.1-11.fc38.x86_64 hdf5-openmpi-devel-1.12.1-11.fc38.x86_64 highway-1.0.4-1.fc39.x86_64 hwloc-libs-2.9.0-6.fc39.x86_64 hypre-mpich-2.24.0-4.fc39.x86_64 hypre-openmpi-2.24.0-4.fc39.x86_64 infinipath-psm-3.3-26_g604758e_open.6.fc37.6.x86_64 jbig2dec-libs-0.19-8.fc38.x86_64 jbigkit-libs-2.1-25.fc38.x86_64 json-c-0.16-4.fc38.x86_64 kbd-2.5.1-5.fc39.x86_64 kbd-legacy-2.5.1-5.fc39.noarch kbd-misc-2.5.1-5.fc39.noarch kernel-headers-6.3.0-0.rc5.git0.1.fc39.x86_64 kmod-30-4.fc38.x86_64 kmod-libs-30-4.fc38.x86_64 langpacks-core-font-en-3.0-31.fc38.noarch lasi-1.1.3-10.fc38.x86_64 lcms2-2.15-1.fc39.x86_64 less-608-2.fc38.x86_64 libICE-1.0.10-10.fc38.x86_64 libSM-1.2.3-12.fc38.x86_64 libX11-1.8.4-1.fc38.x86_64 libX11-common-1.8.4-1.fc38.noarch libXau-1.0.11-2.fc38.x86_64 libXext-1.3.5-2.fc38.x86_64 libXft-2.3.6-2.fc38.x86_64 libXpm-3.5.15-3.fc38.x86_64 libXrender-0.9.11-2.fc38.x86_64 libXt-1.2.1-4.fc38.x86_64 libaec-1.0.6-4.fc38.x86_64 libaec-devel-1.0.6-4.fc38.x86_64 libaom-3.6.0-1.fc39.x86_64 libargon2-20190702-2.fc38.x86_64 libavif-0.11.1-9.fc39.x86_64 libb2-0.98.1-8.fc38.x86_64 libcbor-0.10.2-1.fc39.x86_64 libcurl-devel-8.0.1-2.fc39.x86_64 libdatrie-0.2.13-5.fc38.x86_64 libdav1d-1.1.0-1.fc39.x86_64 libedit-3.1-45.20221030cvs.fc38.x86_64 libfabric-1.17.1-1.fc39.x86_64 libfido2-1.13.0-2.fc39.x86_64 libfontenc-1.1.6-2.fc38.x86_64 libgfortran-13.0.1-0.12.fc39.x86_64 libgs-10.01.0-1.fc39.x86_64 libibumad-44.0-3.fc38.x86_64 libibverbs-44.0-3.fc38.x86_64 libijs-0.35-17.fc38.x86_64 libimagequant-4.0.1-4.fc39.x86_64 libjpeg-turbo-2.1.4-2.fc38.x86_64 libjxl-1:0.7.0-6.fc38.x86_64 liblzf-3.6-25.fc38.x86_64 libmpc-1.3.1-2.fc38.x86_64 libnl3-3.7.0-3.fc38.x86_64 libpaper-1:2.0.10-1.fc39.x86_64 libpipeline-1.5.7-2.fc38.x86_64 libpng-2:1.6.37-14.fc38.x86_64 libpsm2-11.2.230-1.fc38.x86_64 libqhull_r-1:7.2.1-12.fc38.x86_64 libquadmath-13.0.1-0.12.fc39.x86_64 libquadmath-devel-13.0.1-0.12.fc39.x86_64 libraqm-0.8.0-4.fc38.x86_64 librdmacm-44.0-3.fc38.x86_64 librsvg2-2.56.0-1.fc39.x86_64 libseccomp-2.5.3-4.fc38.x86_64 libstdc++-devel-13.0.1-0.12.fc39.x86_64 libthai-0.1.29-4.fc38.x86_64 libtiff-4.4.0-5.fc38.x86_64 libtool-ltdl-2.4.7-6.fc38.x86_64 libunistring-1.1-3.fc38.x86_64 libvmaf-2.3.0-5.fc38.x86_64 libwebp-1.3.0-2.fc38.x86_64 libxcb-1.13.1-11.fc38.x86_64 libxcrypt-devel-4.4.33-7.fc39.x86_64 libxslt-1.1.37-3.fc39.x86_64 llvm-libs-15.0.7-2.fc38.x86_64 lzo-2.10-8.fc38.x86_64 m4-1.4.19-4.fc37.x86_64 make-1:4.4.1-1.fc39.x86_64 man-db-2.11.2-2.fc38.x86_64 metis-5.1.0-34.fc38.x86_64 mkfontscale-1.2.2-3.fc38.x86_64 mpark-variant-devel-1.4.0-9.fc38.x86_64 mpdecimal-2.5.1-6.fc38.x86_64 mpi4py-common-3.1.4-3.fc39.noarch mpich-4.0.3-1.fc39.x86_64 mpich-devel-4.0.3-1.fc39.x86_64 munge-libs-0.5.15-4.fc38.x86_64 ncurses-6.4-3.20230114.fc38.x86_64 netcdf-4.9.0-5.fc38.x86_64 netcdf-cxx4-4.3.1-8.fc38.x86_64 netcdf-cxx4-devel-4.3.1-8.fc38.x86_64 netcdf-devel-4.9.0-5.fc38.x86_64 netpbm-11.02.00-1.fc39.x86_64 nettle-3.8-3.fc38.x86_64 nspr-4.35.0-5.fc39.x86_64 nss-3.88.1-2.fc39.x86_64 nss-softokn-3.88.1-2.fc39.x86_64 nss-softokn-freebl-3.88.1-2.fc39.x86_64 nss-sysinit-3.88.1-2.fc39.x86_64 nss-util-3.88.1-2.fc39.x86_64 numactl-libs-2.0.16-2.fc38.x86_64 openblas-0.3.21-4.fc38.x86_64 openblas-openmp-0.3.21-4.fc38.x86_64 openblas-openmp64-0.3.21-4.fc38.x86_64 openjpeg2-2.5.0-3.fc38.x86_64 openmpi-4.1.5-1.fc39.x86_64 openmpi-devel-4.1.5-1.fc39.x86_64 opensm-libs-3.3.24-5.fc38.x86_64 openssh-9.0p1-14.fc39.1.x86_64 openssh-clients-9.0p1-14.fc39.1.x86_64 orangefs-2.9.8-8.fc38.x86_64 pango-1.50.14-1.fc39.x86_64 perl-B-1.83-495.fc38.x86_64 perl-Carp-1.52-490.fc38.noarch perl-Class-Struct-0.66-495.fc38.noarch perl-Data-Dumper-2.184-491.fc38.x86_64 perl-DynaLoader-1.52-495.fc38.x86_64 perl-Encode-4:3.19-493.fc38.x86_64 perl-Errno-1.36-495.fc38.x86_64 perl-Exporter-5.77-490.fc38.noarch perl-Fcntl-1.15-495.fc38.x86_64 perl-File-Basename-2.85-495.fc38.noarch perl-File-Compare-1.100.700-495.fc38.noarch perl-File-Copy-2.39-495.fc38.noarch perl-File-Find-1.40-495.fc38.noarch perl-File-Path-2.18-490.fc38.noarch perl-File-Temp-1:0.231.100-490.fc38.noarch perl-File-stat-1.12-495.fc38.noarch perl-Getopt-Long-1:2.54-2.fc38.noarch perl-Getopt-Std-1.13-495.fc38.noarch perl-HTTP-Tiny-0.082-2.fc38.noarch perl-IO-1.50-495.fc38.x86_64 perl-IPC-Open3-1.22-495.fc38.noarch perl-MIME-Base64-3.16-490.fc38.x86_64 perl-POSIX-2.03-495.fc38.x86_64 perl-PathTools-3.84-490.fc38.x86_64 perl-Pod-Escapes-1:1.07-490.fc38.noarch perl-Pod-Perldoc-3.28.01-491.fc38.noarch perl-Pod-Simple-1:3.43-491.fc38.noarch perl-Pod-Usage-4:2.03-4.fc38.noarch perl-Scalar-List-Utils-5:1.63-490.fc38.x86_64 perl-SelectSaver-1.02-495.fc38.noarch perl-Socket-4:2.036-2.fc38.x86_64 perl-Storable-1:3.26-490.fc38.x86_64 perl-Symbol-1.09-495.fc38.noarch perl-Term-ANSIColor-5.01-491.fc38.noarch perl-Term-Cap-1.18-1.fc39.noarch perl-Text-ParseWords-3.31-490.fc38.noarch perl-Text-Tabs+Wrap-2021.0814-490.fc38.noarch perl-Thread-Queue-3.14-490.fc38.noarch perl-Time-Local-2:1.300-490.fc38.noarch perl-constant-1.33-491.fc38.noarch perl-if-0.61.000-495.fc38.noarch perl-interpreter-4:5.36.0-495.fc38.x86_64 perl-libs-4:5.36.0-495.fc38.x86_64 perl-mro-1.26-495.fc38.x86_64 perl-overload-1.35-495.fc38.noarch perl-overloading-0.02-495.fc38.noarch perl-parent-1:0.241-1.fc39.noarch perl-podlators-1:5.01-2.fc38.noarch perl-threads-1:2.27-490.fc38.x86_64 perl-threads-shared-1.64-490.fc38.x86_64 perl-vars-1.05-495.fc38.noarch petsc-mpich-3.17.4-15.fc39.x86_64 petsc-mpich-devel-3.17.4-15.fc39.x86_64 petsc-openmpi-3.17.4-15.fc39.x86_64 petsc-openmpi-devel-3.17.4-15.fc39.x86_64 pixman-0.42.2-1.fc39.x86_64 pmix-4.1.2-4.fc38.x86_64 poppler-23.02.0-1.fc38.x86_64 poppler-data-0.4.11-4.fc38.noarch poppler-glib-23.02.0-1.fc38.x86_64 procps-ng-3.3.17-9.fc38.x86_64 ptscotch-mpich-6.1.2-3.fc37.x86_64 ptscotch-openmpi-6.1.2-3.fc37.x86_64 pyproject-rpm-macros-1.6.3-1.fc39.noarch python-pip-wheel-23.0.1-2.fc39.noarch python-rpm-macros-3.11-10.fc39.noarch python-setuptools-wheel-65.5.1-2.fc38.noarch python3-3.11.2-1.fc39.x86_64 python3-Cython-3.0.0~b2-1.fc39.x86_64 python3-appdirs-1.4.4-8.fc38.noarch python3-babel-2.12.1-1.fc39.noarch python3-boutdata-0.1.9-2.fc38.noarch python3-boututils-0.1.9-3.fc38.noarch python3-brotli-1.0.9-11.fc38.x86_64 python3-cached_property-1.5.2-9.fc38.noarch python3-cairo-1.23.0-2.fc38.x86_64 python3-cftime-1.6.1-2.fc38.x86_64 python3-charset-normalizer-3.1.0-1.fc39.noarch python3-contourpy-1.0.7-2.fc38.x86_64 python3-cycler-0.11.0-7.fc38.noarch python3-dateutil-1:2.8.2-6.fc39.noarch python3-devel-3.11.2-1.fc39.x86_64 python3-docutils-0.19-2.fc38.noarch python3-fonttools-4.39.3-1.fc39.x86_64 python3-fs-2.4.16-1.fc39.noarch python3-h5py-mpich-3.8.0-1.fc39.x86_64 python3-h5py-openmpi-3.8.0-1.fc39.x86_64 python3-idna-3.4-2.fc38.noarch python3-imagesize-1.4.1-2.fc38.noarch python3-jinja2-3.0.3-7.fc38.noarch python3-kiwisolver-1.4.4-7.fc38.x86_64 python3-libs-3.11.2-1.fc39.x86_64 python3-lxml-4.9.2-2.fc38.x86_64 python3-markupsafe-2.1.2-1.fc38.x86_64 python3-matplotlib-3.7.1-1.fc39.x86_64 python3-matplotlib-data-3.7.1-1.fc39.noarch python3-matplotlib-data-fonts-3.7.1-1.fc39.noarch python3-matplotlib-tk-3.7.1-1.fc39.x86_64 python3-mpi4py-mpich-3.1.4-3.fc39.x86_64 python3-mpi4py-openmpi-3.1.4-3.fc39.x86_64 python3-mpich-4.0.3-1.fc39.x86_64 python3-mpmath-1.3.0-1.fc39.noarch python3-munkres-1.1.2-14.fc38.noarch python3-netcdf4-1.6.3-1.fc39.x86_64 python3-numexpr-2.8.4-1.fc38.x86_64 python3-numpy-1:1.24.1-3.fc39.x86_64 python3-numpy-f2py-1:1.24.1-3.fc39.x86_64 python3-olefile-0.46-19.fc38.noarch python3-openmpi-4.1.5-1.fc39.x86_64 python3-packaging-23.0-1.fc38.noarch python3-pillow-9.5.0-1.fc39.x86_64 python3-pillow-tk-9.5.0-1.fc39.x86_64 python3-pygments-2.14.0-1.fc39.noarch python3-pyparsing-3.0.9-3.fc38.noarch python3-pysocks-1.7.1-17.fc39.noarch python3-requests-2.28.2-1.fc38.noarch python3-rpm-generators-14-3.fc39.noarch python3-rpm-macros-3.11-10.fc39.noarch python3-scipy-1.10.1-2.fc39.x86_64 python3-setuptools-65.5.1-2.fc38.noarch python3-six-1.16.0-9.fc38.noarch python3-snowballstemmer-2.2.0-5.fc38.noarch python3-sphinx-1:5.3.0-4.fc39.noarch python3-sphinx-theme-alabaster-0.7.12-17.fc38.noarch python3-sphinxcontrib-applehelp-1.0.2-11.fc38.noarch python3-sphinxcontrib-devhelp-1.0.2-11.fc38.noarch python3-sphinxcontrib-htmlhelp-2.0.0-8.fc38.noarch python3-sphinxcontrib-jsmath-1.0.1-19.fc38.noarch python3-sphinxcontrib-qthelp-1.0.3-12.fc38.noarch python3-sphinxcontrib-serializinghtml-1.1.5-7.fc38.noarch python3-sympy-1.11.1-4.fc39.x86_64 python3-tables-3.7.0-7.fc38.x86_64 python3-tkinter-3.11.2-1.fc39.x86_64 python3-urllib3-1.26.12-2.fc38.noarch rav1e-libs-0.5.1-9.fc39.x86_64 rpm-mpi-hooks-8-5.fc38.noarch scalapack-common-2.2.0-4.fc39.x86_64 scalapack-mpich-2.2.0-4.fc39.x86_64 scalapack-openmpi-2.2.0-4.fc39.x86_64 scotch-6.1.2-3.fc37.x86_64 shared-mime-info-2.2-3.fc38.x86_64 snappy-1.1.10-1.fc39.x86_64 suitesparse-5.13.0-2.fc38.x86_64 suitesparse64-5.13.0-2.fc38.x86_64 sundials-5.8.0-15.fc39.x86_64 sundials-devel-5.8.0-15.fc39.x86_64 sundials-mpich-5.8.0-15.fc39.x86_64 sundials-mpich-devel-5.8.0-15.fc39.x86_64 sundials-openmpi-5.8.0-15.fc39.x86_64 sundials-openmpi-devel-5.8.0-15.fc39.x86_64 superlu_dist-mpich-1:8.1.1-3.fc39.x86_64 superlu_dist-openmpi-1:8.1.1-3.fc39.x86_64 svt-av1-libs-1.4.1-2.fc38.x86_64 systemd-253.2-1.fc39.x86_64 systemd-pam-253.2-1.fc39.x86_64 systemd-rpm-macros-253.2-1.fc39.noarch systemd-udev-253.2-1.fc39.x86_64 tcl-1:8.6.12-4.fc38.x86_64 tcsh-6.24.07-2.fc38.x86_64 tk-1:8.6.12-4.fc38.x86_64 ucx-1.13.1-4.fc39.x86_64 urw-base35-bookman-fonts-20200910-16.fc38.noarch urw-base35-c059-fonts-20200910-16.fc38.noarch urw-base35-d050000l-fonts-20200910-16.fc38.noarch urw-base35-fonts-20200910-16.fc38.noarch urw-base35-fonts-common-20200910-16.fc38.noarch urw-base35-gothic-fonts-20200910-16.fc38.noarch urw-base35-nimbus-mono-ps-fonts-20200910-16.fc38.noarch urw-base35-nimbus-roman-fonts-20200910-16.fc38.noarch urw-base35-nimbus-sans-fonts-20200910-16.fc38.noarch urw-base35-p052-fonts-20200910-16.fc38.noarch urw-base35-standard-symbols-ps-fonts-20200910-16.fc38.noarch urw-base35-z003-fonts-20200910-16.fc38.noarch vim-filesystem-2:9.0.1429-1.fc39.noarch xapian-core-libs-1.4.20-3.fc39.x86_64 xml-common-0.6.3-60.fc38.noarch xorg-x11-fonts-ISO8859-1-100dpi-7.5-35.fc38.noarch zlib-devel-1.2.13-3.fc38.x86_64 Complete! Finish: build setup for bout++-4.4.2-5.fc39.src.rpm Start: rpmbuild bout++-4.4.2-5.fc39.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1658275200 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.7Y6YEa + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf BOUT++-v4.4.2 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/BOUT++-v4.4.2.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd BOUT++-v4.4.2 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + sed -e /boututils/d -e /boutdata/d -i make.config.in + rm -rf externalpackages/mpark.variant/ + mkdir -p externalpackages/mpark.variant/include/ + rm -rf tools/pylib/boutdata + rm -rf tools/pylib/boututils ++ find -L tools/pylib/ -type f ++ grep -v _boutcore_build + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/zoidberg/zoidberg.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/zoidberg/test_zoidberg.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/zoidberg/test_rzline.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/zoidberg/test_poloidal_grid.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/zoidberg/test_grid.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/zoidberg/test_fieldtracer.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/zoidberg/test_field.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/zoidberg/rzline.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/zoidberg/progress.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/zoidberg/poloidal_grid.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/zoidberg/plot.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/zoidberg/grid.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/zoidberg/fieldtracer.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/zoidberg/field.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/zoidberg/boundary.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/zoidberg/__init__.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/post_bout/rms.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/post_bout/read_inp.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/post_bout/read_cxx.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/post_bout/pb_present.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/post_bout/pb_nonlinear.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/post_bout/pb_draw.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/post_bout/pb_corral.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/post_bout/grate2.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/post_bout/basic_info.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/post_bout/__init__.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/post_bout/ListDict.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/boutconfig/__init__.py.in + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/boutconfig/__init__.py.cin + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/bout_runners/bout_runners.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/bout_runners/__init__.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/bout_runners/README.md + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/README.md + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/Makefile + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build) + sed -i '/^#!\//d' tools/pylib/.gitignore + autoupdate configure.ac:178: warning: The preprocessor macro `STDC_HEADERS' is obsolete. Except in unusual embedded environments, you can safely include all ISO C90 headers unconditionally. + touch build-aux/config.rpath + autoreconf -vif autoreconf: export WARNINGS= autoreconf: Entering directory '.' autoreconf: configure.ac: not using Gettext autoreconf: running: aclocal --force autoreconf: configure.ac: tracing configure.ac: warning: AM_GNU_GETTEXT is used, but not AM_GNU_GETTEXT_VERSION or AM_GNU_GETTEXT_REQUIRE_VERSION autoreconf: configure.ac: not using Libtool autoreconf: configure.ac: not using Intltool autoreconf: configure.ac: not using Gtkdoc autoreconf: running: /usr/bin/autoconf --force configure.ac:178: warning: The preprocessor macro `STDC_HEADERS' is obsolete. configure.ac:178: Except in unusual embedded environments, you can safely include all configure.ac:178: ISO C90 headers unconditionally. configure.ac:636: warning: The macro `AC_HAVE_LIBRARY' is obsolete. configure.ac:636: You should run autoupdate. ./lib/autoconf/libs.m4:138: AC_HAVE_LIBRARY is expanded from... m4/ax_lib_hdf5.m4:93: AX_LIB_HDF5 is expanded from... configure.ac:636: the top level configure.ac:649: warning: The macro `AC_HAVE_LIBRARY' is obsolete. configure.ac:649: You should run autoupdate. ./lib/autoconf/libs.m4:138: AC_HAVE_LIBRARY is expanded from... m4/ax_lib_parallelhdf5.m4:93: AX_LIB_PARALLELHDF5 is expanded from... configure.ac:649: the top level autoreconf: configure.ac: not using Autoheader autoreconf: configure.ac: not using Automake autoreconf: 'build-aux/install-sh' is updated autoreconf: 'build-aux/config.sub' is updated autoreconf: 'build-aux/config.guess' is updated autoreconf: Leaving directory '.' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.RIIDr4 + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd BOUT++-v4.4.2 + export CC=mpicc + CC=mpicc + export CXX=mpicxx + CXX=mpicxx + for mpi in mpich openmpi + mkdir build_mpich + cp -al CHANGELOG.md CITATION.bib CITATION.cff CMakeLists.txt CONTRIBUTING.md LICENSE LICENSE.GPL README.md aclocal.m4 aminclude_static.am autom4te.cache change_summary.md cmake configure configure.ac configure.ac~ configure~ examples externalpackages include locale m4 make.config.in makefile makefile.submodules manual output.make requirements.txt src tests tools build-aux bin build_mpich + for mpi in mpich openmpi + mkdir build_openmpi + cp -al CHANGELOG.md CITATION.bib CITATION.cff CMakeLists.txt CONTRIBUTING.md LICENSE LICENSE.GPL README.md aclocal.m4 aminclude_static.am autom4te.cache change_summary.md cmake configure configure.ac configure.ac~ configure~ examples externalpackages include locale m4 make.config.in makefile makefile.submodules manual output.make requirements.txt src tests tools build-aux bin build_openmpi + for mpi in mpich openmpi + pushd build_mpich ~/build/BUILD/BOUT++-v4.4.2/build_mpich ~/build/BUILD/BOUT++-v4.4.2 + '[' mpich = mpich ']' + . /etc/profile.d/modules.sh ++ '[' -n /bin/sh ']' ++ '[' sh = sh ']' ++ shell=sh ++ '[' -f /usr/share/Modules/init/sh ']' ++ . /usr/share/Modules/init/sh +++ unset _mlshdbg +++ '[' 0 = 1 ']' +++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD' +++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD' +++ unset _mlre _mlIFS +++ '[' -n x ']' +++ _mlIFS=' ' +++ IFS=' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' ++++ eval 'echo ${LD_LIBRARY_PATH+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH ++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}' +++++ echo +++ _mlre='LD_LIBRARY_PATH='\'''\'' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_PRELOAD = LD_PRELOAD ']' +++ '[' LD_PRELOAD = LD_PRELOAD ']' ++++ eval 'echo ${LD_PRELOAD+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_PRELOAD ++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}' +++++ echo +++ _mlre='LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' +++ '[' -n 'LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']' +++ _mlre='eval LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 ' ++++ eval 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++++ LD_LIBRARY_PATH= +++++ LD_PRELOAD= +++++ __MODULES_QUARANTINE_SET=1 +++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++ _mlcode='_module_raw() { eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")"; _mlstatus=$?; return $_mlstatus; }; module() { local _mlredir=0; if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then _mlredir=0; elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then _mlredir=1; fi; fi; case " $@ " in *'\'' --no-redirect '\''*) _mlredir=0 ;; *'\'' --redirect '\''*) _mlredir=1 ;; esac; if [ $_mlredir -eq 0 ]; then _module_raw "$@"; else _module_raw "$@" 2>&1; fi; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; unset __MODULES_AUTOINIT_INPROGRESS; MODULESHOME=/usr/share/Modules; export MODULESHOME; test 0;' +++ _mlret=0 +++ '[' -n x ']' +++ IFS=' ' +++ unset _mlIFS +++ unset _mlre _mlv _mlrv +++ '[' 0 -eq 0 ']' +++ eval '_module_raw() { eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")"; _mlstatus=$?; return $_mlstatus; }; module() { local _mlredir=0; if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then _mlredir=0; elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then _mlredir=1; fi; fi; case " $@ " in *'\'' --no-redirect '\''*) _mlredir=0 ;; *'\'' --redirect '\''*) _mlredir=1 ;; esac; if [ $_mlredir -eq 0 ]; then _module_raw "$@"; else _module_raw "$@" 2>&1; fi; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; unset __MODULES_AUTOINIT_INPROGRESS; MODULESHOME=/usr/share/Modules; export MODULESHOME; test 0;' ++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl ++++ export MODULES_CMD ++++ unset __MODULES_AUTOINIT_INPROGRESS ++++ MODULESHOME=/usr/share/Modules ++++ export MODULESHOME ++++ test 0 +++ '[' /bin/sh '!=' '' ']' +++ export -f _module_raw +++ export -f module ++++ type -t ml +++ '[' function = function ']' +++ export -f ml +++ unset _mlcode _mlret +++ '[' -n '' ']' + module load mpi/mpich-x86_64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw load mpi/mpich-x86_64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh load mpi/mpich-x86_64 + eval 'LD_LIBRARY_PATH=/usr/lib64/mpich/lib; export LD_LIBRARY_PATH; MPI_COMPILER=mpich-x86_64; export MPI_COMPILER; MANPATH=/usr/share/man/mpich-x86_64:/usr/share/man:; export MANPATH; MPI_INCLUDE=/usr/include/mpich-x86_64; export MPI_INCLUDE; MPI_MAN=/usr/share/man/mpich-x86_64; export MPI_MAN; MPI_PYTHON_SITEARCH=%\{python2_sitearch\}/mpich; export MPI_PYTHON_SITEARCH; _LMFILES_=/usr/share/modulefiles/mpi/mpich-x86_64; export _LMFILES_; LOADEDMODULES=mpi/mpich-x86_64; export LOADEDMODULES; PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH; MPI_PYTHON3_SITEARCH=/usr/lib64/python3.11/site-packages/mpich; export MPI_PYTHON3_SITEARCH; MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich; export MPI_FORTRAN_MOD_DIR; MPI_HOME=/usr/lib64/mpich; export MPI_HOME; __MODULES_LMCONFLICT=mpi/mpich-x86_64\&mpi; export __MODULES_LMCONFLICT; __MODULES_SHARE_MANPATH=:2; export __MODULES_SHARE_MANPATH; MPI_SYSCONFIG=/etc/mpich-x86_64; export MPI_SYSCONFIG; MPI_SUFFIX=_mpich; export MPI_SUFFIX; __MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH; MPI_PYTHON2_SITEARCH=%\{python2_sitearch\}/mpich; export MPI_PYTHON2_SITEARCH; MPI_LIB=/usr/lib64/mpich/lib; export MPI_LIB; PATH=/usr/lib64/mpich/bin:/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH; MPI_BIN=/usr/lib64/mpich/bin; export MPI_BIN; test 0;' ++ LD_LIBRARY_PATH=/usr/lib64/mpich/lib ++ export LD_LIBRARY_PATH ++ MPI_COMPILER=mpich-x86_64 ++ export MPI_COMPILER ++ MANPATH=/usr/share/man/mpich-x86_64:/usr/share/man: ++ export MANPATH ++ MPI_INCLUDE=/usr/include/mpich-x86_64 ++ export MPI_INCLUDE ++ MPI_MAN=/usr/share/man/mpich-x86_64 ++ export MPI_MAN ++ MPI_PYTHON_SITEARCH='%{python2_sitearch}/mpich' ++ export MPI_PYTHON_SITEARCH ++ _LMFILES_=/usr/share/modulefiles/mpi/mpich-x86_64 ++ export _LMFILES_ ++ LOADEDMODULES=mpi/mpich-x86_64 ++ export LOADEDMODULES ++ PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.11/site-packages/mpich ++ export MPI_PYTHON3_SITEARCH ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich ++ export MPI_FORTRAN_MOD_DIR ++ MPI_HOME=/usr/lib64/mpich ++ export MPI_HOME ++ __MODULES_LMCONFLICT='mpi/mpich-x86_64&mpi' ++ export __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:2 ++ export __MODULES_SHARE_MANPATH ++ MPI_SYSCONFIG=/etc/mpich-x86_64 ++ export MPI_SYSCONFIG ++ MPI_SUFFIX=_mpich ++ export MPI_SUFFIX ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ MPI_PYTHON2_SITEARCH='%{python2_sitearch}/mpich' ++ export MPI_PYTHON2_SITEARCH ++ MPI_LIB=/usr/lib64/mpich/lib ++ export MPI_LIB ++ PATH=/usr/lib64/mpich/bin:/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ MPI_BIN=/usr/lib64/mpich/bin ++ export MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + export 'CFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=mpicc + export CC + CXX=mpicxx + export CXX + '[' '-flto=auto -ffat-lto-objectsx' '!=' x ']' ++ find . -type f -name configure -print + for file in $(find . -type f -name configure -print) + /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\) = /__attribute__ ((used)) char (*f) () = /g' ./tools/pdb2idl/configure + diff -u ./tools/pdb2idl/configure.backup ./tools/pdb2idl/configure + mv ./tools/pdb2idl/configure.backup ./tools/pdb2idl/configure + /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\);/__attribute__ ((used)) char (*f) ();/g' ./tools/pdb2idl/configure + diff -u ./tools/pdb2idl/configure.backup ./tools/pdb2idl/configure + mv ./tools/pdb2idl/configure.backup ./tools/pdb2idl/configure + /usr/bin/sed -r --in-place=.backup 's/^char \$2 \(\);/__attribute__ ((used)) char \$2 ();/g' ./tools/pdb2idl/configure + diff -u ./tools/pdb2idl/configure.backup ./tools/pdb2idl/configure + mv ./tools/pdb2idl/configure.backup ./tools/pdb2idl/configure + /usr/bin/sed --in-place=.backup '1{$!N;$!N};$!N;s/int x = 1;\nint y = 0;\nint z;\nint nan;/volatile int x = 1; volatile int y = 0; volatile int z, nan;/;P;D' ./tools/pdb2idl/configure + diff -u ./tools/pdb2idl/configure.backup ./tools/pdb2idl/configure + mv ./tools/pdb2idl/configure.backup ./tools/pdb2idl/configure + /usr/bin/sed --in-place=.backup 's#^lt_cv_sys_global_symbol_to_cdecl=.*#lt_cv_sys_global_symbol_to_cdecl="sed -n -e '\''s/^T .* \\(.*\\)$/extern int \\1();/p'\'' -e '\''s/^$symcode* .* \\(.*\\)$/extern char \\1;/p'\''"#' ./tools/pdb2idl/configure + diff -u ./tools/pdb2idl/configure.backup ./tools/pdb2idl/configure + mv ./tools/pdb2idl/configure.backup ./tools/pdb2idl/configure + for file in $(find . -type f -name configure -print) + /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\) = /__attribute__ ((used)) char (*f) () = /g' ./configure + diff -u ./configure.backup ./configure + mv ./configure.backup ./configure + /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\);/__attribute__ ((used)) char (*f) ();/g' ./configure + diff -u ./configure.backup ./configure + mv ./configure.backup ./configure + /usr/bin/sed -r --in-place=.backup 's/^char \$2 \(\);/__attribute__ ((used)) char \$2 ();/g' ./configure + diff -u ./configure.backup ./configure --- ./configure.backup 2023-04-04 13:40:05.050067820 +0000 +++ ./configure 2023-04-04 13:40:05.190066456 +0000 @@ -1864,7 +1864,7 @@ #ifdef __cplusplus extern "C" #endif -char $2 (); +__attribute__ ((used)) char $2 (); /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ + /usr/bin/sed --in-place=.backup '1{$!N;$!N};$!N;s/int x = 1;\nint y = 0;\nint z;\nint nan;/volatile int x = 1; volatile int y = 0; volatile int z, nan;/;P;D' ./configure + diff -u ./configure.backup ./configure + mv ./configure.backup ./configure + /usr/bin/sed --in-place=.backup 's#^lt_cv_sys_global_symbol_to_cdecl=.*#lt_cv_sys_global_symbol_to_cdecl="sed -n -e '\''s/^T .* \\(.*\\)$/extern int \\1();/p'\'' -e '\''s/^$symcode* .* \\(.*\\)$/extern char \\1;/p'\''"#' ./configure + diff -u ./configure.backup ./configure + mv ./configure.backup ./configure + '[' 1 = 1 ']' +++ dirname ./configure ++ find . -name config.guess -o -name config.sub + for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub) ++ basename ./build-aux/config.guess + '[' -f /usr/lib/rpm/redhat/config.guess ']' + /usr/bin/rm -f ./build-aux/config.guess ++ basename ./build-aux/config.guess + /usr/bin/cp -fv /usr/lib/rpm/redhat/config.guess ./build-aux/config.guess '/usr/lib/rpm/redhat/config.guess' -> './build-aux/config.guess' + for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub) ++ basename ./build-aux/config.sub + '[' -f /usr/lib/rpm/redhat/config.sub ']' + /usr/bin/rm -f ./build-aux/config.sub ++ basename ./build-aux/config.sub + /usr/bin/cp -fv /usr/lib/rpm/redhat/config.sub ./build-aux/config.sub '/usr/lib/rpm/redhat/config.sub' -> './build-aux/config.sub' + '[' 1 = 1 ']' + '[' x '!=' 'x-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' ']' ++ find . -name ltmain.sh + for i in $(find . -name ltmain.sh) + /usr/bin/sed -i.backup -e 's~compiler_flags=$~compiler_flags="-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld"~' ./build-aux/ltmain.sh ++ grep -q runstatedir=DIR ./configure ++ echo --runstatedir=/run + ./configure --build=x86_64-redhat-linux-gnu --host=x86_64-redhat-linux-gnu --program-prefix= --disable-dependency-tracking --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib64 --libexecdir=/usr/libexec --localstatedir=/var --runstatedir=/run --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info --with-netcdf --with-hdf5 --enable-shared --with-system-mpark --libdir=/usr/lib64/mpich/lib --bindir=/usr/lib64/mpich/bin --sbindir=/usr/lib64/mpich/sbin --includedir=/usr/include/mpich-x86_64 --datarootdir=/usr/share --with-petsc --with-sundials configure: WARNING: unrecognized options: --disable-dependency-tracking checking for x86_64-redhat-linux-gnu-mpic++... no checking for x86_64-redhat-linux-gnu-mpicxx... no checking for x86_64-redhat-linux-gnu-mpiCC... no checking for x86_64-redhat-linux-gnu-sxmpic++... no checking for x86_64-redhat-linux-gnu-hcp... no checking for x86_64-redhat-linux-gnu-mpxlC_r... no checking for x86_64-redhat-linux-gnu-mpxlC... no checking for x86_64-redhat-linux-gnu-mpixlcxx_r... no checking for x86_64-redhat-linux-gnu-mpixlcxx... no checking for x86_64-redhat-linux-gnu-mpg++... no checking for x86_64-redhat-linux-gnu-mpc++... no checking for x86_64-redhat-linux-gnu-mpCC... no checking for x86_64-redhat-linux-gnu-cmpic++... no checking for x86_64-redhat-linux-gnu-mpiFCC... no checking for x86_64-redhat-linux-gnu-CCicpc... no checking for x86_64-redhat-linux-gnu-pgCC... no checking for x86_64-redhat-linux-gnu-pathCC... no checking for x86_64-redhat-linux-gnu-sxc++... no checking for x86_64-redhat-linux-gnu-xlC_r... no checking for x86_64-redhat-linux-gnu-xlC... no checking for x86_64-redhat-linux-gnu-bgxlC_r... no checking for x86_64-redhat-linux-gnu-bgxlC... no checking for x86_64-redhat-linux-gnu-openCC... no checking for x86_64-redhat-linux-gnu-sunCC... no checking for x86_64-redhat-linux-gnu-crayCC... no checking for x86_64-redhat-linux-gnu-aCC... no checking for x86_64-redhat-linux-gnu-CC... no checking for x86_64-redhat-linux-gnu-g++... no checking for x86_64-redhat-linux-gnu-c++... no checking for x86_64-redhat-linux-gnu-gpp... no checking for x86_64-redhat-linux-gnu-cxx... no checking for x86_64-redhat-linux-gnu-cc++... no checking for x86_64-redhat-linux-gnu-cl.exe... no checking for x86_64-redhat-linux-gnu-FCC... no checking for x86_64-redhat-linux-gnu-KCC... no checking for x86_64-redhat-linux-gnu-RCC... no checking for mpic++... mpic++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C++... yes checking whether mpic++ accepts -g... yes checking for mpic++ option to enable C++11 features... none needed checking for function MPI_Init... yes checking for mpi.h... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking whether ln -s works... yes checking whether make sets $(MAKE)... yes checking for a BSD-compatible install... /usr/bin/install -c checking for gmake... gmake checking for x86_64-redhat-linux-gnu-ranlib... no checking for ranlib... ranlib checking whether mpic++ supports C++11 features by default... yes checking for sqrt in -lm... yes checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for malloc.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for strings.h... (cached) yes checking build system type... x86_64-redhat-linux-gnu checking host system type... x86_64-redhat-linux-gnu checking for GNU libc compatible malloc... yes checking for GNU libc compatible realloc... yes checking for vprintf... yes checking does C++ compiler support __PRETTY_FUNCTION__... yes checking for a sed that does not truncate output... /usr/bin/sed checking whether to build with code coverage support... no checking whether C++ compiler accepts -Werror=unknown-warning-option... no checking whether C++ compiler accepts -we10006,10148... no checking whether C++ compiler accepts -Wall... yes checking whether C++ compiler accepts -Wextra... yes checking whether C++ compiler accepts -Wnull-dereference... yes checking whether C++ compiler accepts -Wno-cast-function-type... yes configure: Enabling default optimisations checking whether C++ compiler accepts -O2... yes configure: Run-time checking enabled configure: -> Level 2 (Basic checking + stack tracing) configure: Segmentation fault handling enabled configure: Output coloring enabled configure: Field name tracking disabled configure: Signaling floating point exceptions disabled checking for addr2line... yes checking for popen... yes checking for backtrace... yes checking for execinfo.h... yes checking for dlfcn.h... yes checking for library containing dladdr... none required configure: Native backtrace enabled ./configure: line 7057: git: command not found checking for fftw-wisdom... /usr/bin/fftw-wisdom checking for fftw3.h... yes checking for libfftw3... yes checking for ncxx4-config... /usr/bin/ncxx4-config configure: -> NetCDF-4 support enabled configure: Parallel-NetCDF support disabled checking for gawk... gawk checking for x86_64-redhat-linux-gnu-gcc... mpicc checking whether the compiler supports GNU C... yes checking whether mpicc accepts -g... yes checking for mpicc option to enable C11 features... none needed checking for h5cc... /usr/bin/h5cc checking for HDF5 type... serial checking for HDF5 libraries... yes (version 1.12.1) checking for hdf5.h... yes checking for H5Fcreate in -lhdf5... yes checking for main in -lhdf5_hl... yes configure: Found HDF5 checking how to run the C++ preprocessor... mpic++ -E configure: Parallel HDF5 support disabled configure: Supported file formats: netCDF HDF5 checking for libblas... no checking for liblapack... no checking for x86_64-redhat-linux-gnu-pkg-config... /usr/bin/x86_64-redhat-linux-gnu-pkg-config checking pkg-config is at least version 0.9.0... yes configure: Using PETSC_DIR=, PETSC_ARCH= checking for //conf... no checking for //lib/petsc/conf... no checking for PETSc >= 3.4.0 ... yes checking PETSc has SUNDIALS support... no checking for SUNDIALS config header... yes checking for SUNDIALS minor version... ok configure: Searching for SUNDIALS IDA library checking for sundials-config... no configure: WARNING: No sundials-config available, no path given, will try compiling with IDA anyway checking if we can compile with SUNDIALS IDA... yes configure: Using SUNDIALS IDA solver configure: => IDA solver enabled configure: Searching for SUNDIALS CVODE library checking for sundials-config... (cached) no checking if we can compile with SUNDIALS CVODE... configure: WARNING: No sundials-config available, no path given, will try compiling with CVODE anyway yes configure: Using SUNDIALS CVODE solver configure: => CVODE solver enabled configure: Searching for SUNDIALS ARKODE library checking for sundials-config... (cached) no checking if we can compile with SUNDIALS ARKODE... configure: WARNING: No sundials-config available, no path given, will try compiling with ARKODE anyway yes configure: Using SUNDIALS ARKODE solver configure: => ARKODE solver enabled configure: Scorep support disabled checking for mpark.variant... yes checking for uuid/uuid.h... no configure: PVODE being built without OpenMP support configure: Building PVODE configure: Successfully built PVODE configure: Installing PVODE into BOUT++ sourcetree checking whether NLS is requested... yes checking for msgfmt... /usr/bin/msgfmt checking for gmsgfmt... /usr/bin/msgfmt checking for xgettext... /usr/bin/xgettext checking for msgmerge... /usr/bin/msgmerge checking for ld used by mpicc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for shared library run path origin... done checking 32-bit host C ABI... no checking for ELF binary format... yes checking for the common suffixes of directories in the library search path... lib,lib,lib64 checking for CFPreferencesCopyAppValue... no checking for CFLocaleCopyPreferredLanguages... no checking for GNU gettext in libc... yes checking whether to use NLS... yes checking where the gettext function comes from... libc configure: Enabling language support with gettext gmake: Entering directory '/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/locale' Building language: de Building language: es Building language: fr Building language: zh_CN Building language: zh_TW gmake: Leaving directory '/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/locale' configure: creating ./config.status config.status: creating make.config config.status: executing po-directories commands configure: WARNING: unrecognized options: --disable-dependency-tracking configure: creating ./config.status config.status: creating make.config config.status: creating bin/bout-config config.status: creating src/makefile config.status: creating tools/pylib/boutconfig/__init__.py config.status: executing po-directories commands configure: WARNING: unrecognized options: --disable-dependency-tracking configure: ------------------------- configure: Configuration summary configure: ------------------------- configure: PETSc support : yes (has SUNDIALS: no) configure: SLEPc support : no configure: IDA support : yes configure: CVODE support : yes configure: ARKODE support : yes configure: FFTW support : yes configure: NetCDF support : yes configure: Parallel-NetCDF support : no configure: HDF5 support : yes (parallel: no) configure: MUMPS support : no configure: Lapack support : no configure: Scorep support : no configure: OpenMP support : no (schedule: ) configure: Natural language support: yes (path: ${datarootdir}/locale) configure: System UUID generator : no configure: configure: ------------------------------- configure: Data analysis configuration configure: ------------------------------- configure: configure: === IDL === configure: configure: Make sure that the tools/idllib directory is in your IDL_PATH configure: e.g. by adding to your ~/.bashrc file configure: configure: export IDL_PATH=+/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tools/idllib:'':$IDL_PATH configure: configure: === Python === configure: configure: Make sure that the tools/pylib directory is in your PYTHONPATH configure: e.g. by adding to your ~/.bashrc file configure: configure: export PYTHONPATH=/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tools/pylib/:$PYTHONPATH configure: configure: *** Now run 'gmake' to compile BOUT++ *** + sed -e 's| -L/usr/lib64 | |g' -e 's| -Wl,--as-needed | |g' -i make.config + sed -e 's|-lblas|-lflexiblas|g' -e 's|-llapack|-lflexiblas|g' -i make.config + sed -e 's/\\#/#/g' -i make.config + cat make.config # configuration file for BOUT++ # September 2008: Converted to use autoconf. Can be manually edited # for the (very) rare occasions when autoconf fails # extra compilation flags: # -DCHECK=lvl Enables a host of additional checks on each operation # such as uninitialised data if lvl is > 0. -DCHECK=3 # enables all tests, while -DCHECK=0 disables them. # Helps when debugging # -DTRACK Keeps track of variable names. # Enables more useful error messages # for SSE2: -msse2 -mfpmath=sse # # This must also specify one or more file formats # -DPDBF PDB format (need to include pdb_format.cxx) # -DNCDF NetCDF format (nc_format.cxx) # PETSc config variables need to be first, else they may clobber other # options (e.g. CXX, CXXFLAGS) PETSC_DIR ?= PETSC_ARCH ?= SLEPC_DIR ?= SLEPC_ARCH ?= # These lines can be replaced in "make install" to point to install directories # They are used in the CXXFLAGS variable below rather than hard-coding the directories BOUT_INCLUDE_PATH=$(BOUT_TOP)/include BOUT_LIB_PATH=$(BOUT_TOP)/lib BOUT_CONFIG_FILE=$(BOUT_TOP)/make.config SONAME=4.4.0 prefix = /usr exec_prefix = /usr datarootdir = /usr/share # This path to the locale (.mo) files is hard-wired into bout++.cxx at compile time BOUT_LOCALE_PATH=${datarootdir}/locale # Created this variable so that a user won't overwrite the CXXFLAGS variable # on the command line, just add to this one BOUT_FLAGS = $(CXXFLAGS) -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DHAS_PRETTY_FUNCTION -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -DSIGHANDLE -DLOGCOLOR -DBOUT_VERSION_STRING="\"4.4.2\"" -DBOUT_VERSION_DOUBLE=4.42 -DBACKTRACE -fPIC -DBOUT_HAS_FFTW -DNCDF4 -DHDF5 -DBOUT_HAS_PETSC -DBOUT_HAS_IDA -DBOUT_HAS_CVODE -DBOUT_HAS_ARKODE -DBOUT_HAS_PVODE -DBOUT_HAS_GETTEXT -DBOUT_LOCALE_PATH=$(BOUT_LOCALE_PATH) #Use := here to force a "static" evaluation of the current state of BOUT_FLAGS to #avoid infinite recursion that would arise if BOUT_FLAGS appeared on both sides of = BOUT_FLAGS := $(BOUT_FLAGS) -DBOUT_FLAGS_STRING="$(BOUT_FLAGS)" # Specify the MPI C++ compiler in CXX CXX = mpic++ CC = $(CXX) AR = ar ARFLAGS = cruU RANLIB = ranlib MKDIR = /usr/bin/mkdir -p #################################################################### # Do not need to alter anything below #################################################################### LD = $(CXX) LDFLAGS = -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes LIBS = -lm CPPFLAGS = #################################################################### # Extra (optional) source files, includes and libs # NOTE: EXTRA_SRC must include a solver (solver.cxx or ida_solver.cxx) # and a file format (nc_format.cxx or pdb_format.cxx) #################################################################### EXTRA_INCS = $(CPPFLAGS) -I/usr/include -I/usr/include -I/usr/include/mpich-x86_64/petsc EXTRA_LIBS = $(LIBS) -lfftw3 -lnetcdf_c++4 -lnetcdf -lhdf5_hl -lhdf5 -lhdf5_hl -lsz -lz -ldl -lm -L/usr/lib64/mpich/lib -lpetsc -lhdf5 -lsundials_ida -lsundials_nvecparallel -lsundials_cvode -lsundials_nvecparallel -lsundials_arkode -lsundials_nvecparallel -L$(BOUT_LIB_PATH) -lpvode -lpvpre PRECON_SOURCE = BOUT_VERSION = 4.4.2 #################################################################### # These are used for compiling physics modules using BOUT++ library #################################################################### # Files that are needed by configure and should be dependencies for 'all' OBJ = $(SOURCEC:%.cxx=%.o) ifndef RELEASE LIB_A = $(BOUT_LIB_PATH)/libbout++.a LIB_SO = $(BOUT_LIB_PATH)/libbout++.so LIB = $(BOUT_LIB_PATH)/libbout++.so endif MPARK_VARIANT_INCLUDE_PATH= BOUT_INCLUDE = -I$(BOUT_INCLUDE_PATH) $(CXXINCLUDE) $(EXTRA_INCS) BOUT_LIBS = -lm -L$(BOUT_LIB_PATH) -lbout++ $(EXTRA_LIBS) CHANGED = $(shell find -f $(BOUT_TOP)/include $(BOUT_TOP)/src -type f \( -name \*.cxx -or -name \*.h \) -newer $(LIB) -print 2> /dev/null) # This will set a default if no TARGET is provided TARGET ?= $(SOURCEC:%.cxx=%) #################################################################### # Definining stuff for recursive make #################################################################### # Phony targets since they are directory names .PHONY: $(DIRS) lib install libfast runtest manual sphinx doxygen ifneq ("$(TARGET)","libfast") all: $(BOUT_CONFIG_FILE) $(DIRS) $(TARGET) else all: $(BOUT_TOP)/config.status $(BOUT_CONFIG_FILE) $(DIRS) endif libfast: $(BOUT_CONFIG_FILE) $(DIRS) #################################################################### # Recursively run make through subdirs #################################################################### ifeq ("$(TARGET)" , "lib") $(DIRS): # make $@ slowly using the old method where parallel builds can cause # race conditions that @$(MAKE) -s --no-print-directory TARGET=lib -C $@ all else ifeq ("$(TARGET)","libfast") $(DIRS): # make $@ using the libfast method, where all .o files # are only created in the end @$(MAKE) -s --no-print-directory TARGET=$(TARGET) -C $@ $(TARGET) else MODULE_DIR?=$(shell pwd) $(DIRS): # MODULE_DIR: pass the module directory, where the libraries should be # created. # SUB_NAME is used for creating a library with the expected name. # first a potential trailing slash is removed, and after that the # directory name is extracted. This allows to e.g. specify a directory # as fuu/bar/ and still get an archive named bar.a # The # probably doesn't need to be escaped as everything in the # recipy is passed to the shell, even lines starting with # @$(MAKE) -s --no-print-directory MODULE_DIR=$(MODULE_DIR) SUB_NAME=$(shell f=$@ ; g=$${f%/} ; echo $${g##*/}) TARGET=sub -C $@ endif endif # Create 'lib' and 'include' incase they don't exist $(BOUT_TOP)/include $(BOUT_TOP)/lib: $(MKDIR) $@ #################################################################### # Install header files and libraries #################################################################### INSTALL = /usr/bin/install -c INSTALL_PROGRAM = ${INSTALL} INSTALL_DATA = ${INSTALL} -m 644 INSTALL_INCLUDE_PATH = $(DESTDIR)/usr/include/mpich-x86_64/bout++/ # A list of relative paths e.g. "fr/LC_MESSAGES/libbout.mo zh_CN/LC_MESSAGES/libbout.mo" MO_FILES = $(shell cd locale; ls */LC_MESSAGES/libbout.mo) install: libfast $(PRE_INSTALL) # Pre-install commands follow. $(NORMAL_INSTALL) # Normal commands follow. $(MKDIR) $(INSTALL_INCLUDE_PATH)/{,pvode,bout/sys,bout/invert} $(MKDIR) $(DESTDIR)/{/usr/lib64/mpich/lib,/usr/lib64/mpich/bin,/usr/share/bout++/idllib} $(INSTALL_DATA) include/*.hxx $(INSTALL_INCLUDE_PATH) ifeq ("", "yes") $(MKDIR) $(INSTALL_INCLUDE_PATH)/mpark $(INSTALL_DATA) $(MPARK_VARIANT_INCLUDE_PATH)/mpark/*.hpp $(INSTALL_INCLUDE_PATH)/mpark endif $(INSTALL_DATA) include/pvode/*.h $(INSTALL_INCLUDE_PATH)/pvode/ $(INSTALL_DATA) include/bout/*.hxx $(INSTALL_INCLUDE_PATH)/bout/ $(INSTALL_DATA) include/bout/sys/*.hxx $(INSTALL_INCLUDE_PATH)/bout/sys/ $(INSTALL_DATA) include/bout/invert/*.hxx $(INSTALL_INCLUDE_PATH)/bout/invert/ ifneq ("x", "x") $(INSTALL_DATA) lib/libbout++.a $(DESTDIR)/usr/lib64/mpich/lib $(INSTALL_DATA) lib/libpvode.a $(DESTDIR)/usr/lib64/mpich/lib $(INSTALL_DATA) lib/libpvpre.a $(DESTDIR)/usr/lib64/mpich/lib endif ifneq ("$(RM) -f $(BOUT_LIB_PATH)/libbout++.ax", "x") $(INSTALL_PROGRAM) lib/libbout++.so.$(SONAME) $(DESTDIR)/usr/lib64/mpich/lib $(INSTALL_PROGRAM) lib/libpvode.so.* $(DESTDIR)/usr/lib64/mpich/lib $(INSTALL_PROGRAM) lib/libpvpre.so.* $(DESTDIR)/usr/lib64/mpich/lib rm -f $(DESTDIR)/usr/lib64/mpich/lib/lib{bout++,pvode,pvpre}.so ln -s libbout++.so.$(SONAME) $(DESTDIR)/usr/lib64/mpich/lib/libbout++.so ln -s libpvode.so.1.0.0 $(DESTDIR)/usr/lib64/mpich/lib/libpvode.so ln -s libpvpre.so.1.0.0 $(DESTDIR)/usr/lib64/mpich/lib/libpvpre.so endif $(INSTALL_PROGRAM) bin/bout-config $(DESTDIR)/usr/lib64/mpich/bin $(INSTALL_PROGRAM) bin/bout-log-color $(DESTDIR)/usr/lib64/mpich/bin $(INSTALL_DATA) tools/idllib/*.pro $(DESTDIR)/usr/share/bout++/idllib/ $(INSTALL_DATA) tools/idllib/README $(DESTDIR)/usr/share/bout++/idllib/ $(INSTALL_DATA) make.config $(INSTALL_INCLUDE_PATH) for mo in $(MO_FILES); do $(MKDIR) $(DESTDIR)${datarootdir}/locale/`dirname $$mo`; $(INSTALL_DATA) locale/$$mo $(DESTDIR)${datarootdir}/locale/$$mo; done $(POST_INSTALL) # Post-install commands follow. @# Modify paths in the bout-config script sed -i "s|^BOUT_INCLUDE_PATH=.*|BOUT_INCLUDE_PATH=/usr/include/mpich-x86_64/bout++|" $(DESTDIR)/usr/lib64/mpich/bin/bout-config sed -i "s|^BOUT_LIB_PATH=.*|BOUT_LIB_PATH=/usr/lib64/mpich/lib|" $(DESTDIR)/usr/lib64/mpich/bin/bout-config sed -i "s|^BOUT_CONFIG_FILE=.*|BOUT_CONFIG_FILE=/usr/share/bout++/make.config|" $(DESTDIR)/usr/lib64/mpich/bin/bout-config sed -i "s|^idlpath=.*|idlpath=/usr/share/bout++/idllib/|" $(DESTDIR)/usr/lib64/mpich/bin/bout-config sed -i "s|^pythonpath=.*|pythonpath=/usr/share/bout++/pylib/|" $(DESTDIR)/usr/lib64/mpich/bin/bout-config ifeq ("", "yes") sed -i "s|^MPARK_VARIANT_INCLUDE_PATH=.*|MPARK_VARIANT_INCLUDE_PATH=/usr/include/mpich-x86_64/bout++|" $(DESTDIR)/usr/lib64/mpich/bin/bout-config endif @# Modify paths in the make.config file sed -i "s|^BOUT_INCLUDE_PATH=.*|BOUT_INCLUDE_PATH=/usr/include/mpich-x86_64/bout++|" $(INSTALL_INCLUDE_PATH)/make.config sed -i "s|^BOUT_LIB_PATH=.*|BOUT_LIB_PATH=/usr/lib64/mpich/lib|" $(INSTALL_INCLUDE_PATH)/make.config sed -i "s|^BOUT_CONFIG_FILE=.*|BOUT_CONFIG_FILE=/usr/include/mpich-x86_64/bout++/make.config|" $(INSTALL_INCLUDE_PATH)/make.config ifeq ("", "yes") sed -i "s|^MPARK_VARIANT_INCLUDE_PATH=.*|MPARK_VARIANT_INCLUDE_PATH=/usr/include/mpich-x86_64/bout++|" $(INSTALL_INCLUDE_PATH)/make.config endif # Set the make.config as released, so the library isn't rebuild. This way the .a file doesn't need to be preserved/installed sed -i '26 i RELEASED = yes' $(INSTALL_INCLUDE_PATH)/make.config uninstall: $(PRE_UNINSTALL) # Pre-uninstall commands follow. $(NORMAL_UNINSTALL) # Normal commands follow. $(RM) $(INSTALL_INCLUDE_PATH)/make.config $(RM) -r $(DESTDIR)/usr/share/bout++/idllib/ $(RM) $(DESTDIR)/usr/lib64/mpich/bin/bout-config $(RM) $(DESTDIR)/usr/lib64/mpich/bin/bout-log-color $(RM) $(DESTDIR)/usr/lib64/mpich/lib/libbout++.a $(RM) $(DESTDIR)/usr/lib64/mpich/lib/libpvode.a $(RM) $(DESTDIR)/usr/lib64/mpich/lib/libpvpre.a $(RM) -r $(DESTDIR)/usr/include/mpich-x86_64/bout++/ $(RM) $(DESTDIR)${datarootdir}/locale/*/LC_MESSAGES/libbout.mo $(POST_UNINSTALL) # Post-uninstall commands follow. #################################################################### # Builds the library with $(OBJ) which is defined from the SOURCEC variable #################################################################### # Rules for downloading submodules -include $(BOUT_TOP)/makefile.submodules ifeq ("$(TARGET)", "libfast") libfast: makefile $(BOUT_CONFIG_FILE) $(BOUT_TOP)/include $(OBJ) $(DIRS) endif ifeq ("$(TARGET)", "lib") lib: makefile $(BOUT_CONFIG_FILE) $(BOUT_TOP)/include $(BOUT_TOP)/lib $(OBJ) ifneq ("$(OBJ)foo", "foo") @echo " Adding $(OBJ) to libbout++.a" @$(AR) $(ARFLAGS) $(LIB_A) $(OBJ) @$(RANLIB) $(LIB) endif endif ifeq ("$(TARGET)", "sub") LIB=$(MODULE_DIR)/$(SUB_NAME).a sub: makefile $(BOUT_CONFIG_FILE) $(BOUT_TOP)/include $(BOUT_TOP)/lib $(OBJ) ifneq ("$(OBJ)foo", "foo") @echo " Adding $(OBJ) to $(LIB)" @$(AR) $(ARFLAGS) $(LIB) $(OBJ) @$(RANLIB) $(LIB) endif endif runtest: ./runtest ifneq ("$(TARGET)", "sub") ifneq ("$(TARGET)", "libfast") ifneq ("$(TARGET)", "lib") ifneq ("$(TARGET)", "runtest") #################################################################### # Make libbout++.a if it doesn't exist with the checklib target #################################################################### libbout++.a: @echo "Rebuilding out-of-date bout++ library" @$(MAKE) --no-print-directory -C $(BOUT_TOP) #################################################################### # Make the target (e.g. gas_compress) #################################################################### # first we remove a trailing slash, if present. Note that currently we # dont support several trailing slashes, as in fuu/bar/// DIRS_=$(DIRS:%/=%) # then we extract the directory name, in case it is a longer path # We are not in a recipe, so # needs to be escaped # $$ is an escaped $ DIRS__=$(shell for f in $(DIRS_) ; do echo $${f##*/};done) # now we can generate a list of libraries SUB_LIBS=$(DIRS__:%=%.a) $(SUB_LIBS):$(DIRS__) $(SOURCEC): checklib $(SOURCEC:%.cxx=%.o): $(LIB) $(TARGET): makefile $(BOUT_CONFIG_FILE) $(OBJ) $(SUB_LIBS) @echo " Linking" $(TARGET) @$(LD) -o $(TARGET) $(OBJ) $(SUB_LIBS) $(BOUT_LIBS) $(LDFLAGS) checklib: ifneq ("$(CHANGED)foo", "foo") @echo "Rebuilding out-of-date bout++ library" @$(MAKE) --no-print-directory -C $(BOUT_TOP) endif endif endif endif endif # Ignore missing requirement files -include .*.mk # If it is a libfast target, track changes to rebuild library if needed # # Further track dependencies using gcc's -M feature: # -MF write the generated dependency rule to a file # -MG assume missing headers will be generated and don't stop with an error # -MM generate dependency rule for prerequisite, skipping system headers # -MP add phony target for each header to prevent errors when header is missing # -MT add a target to the generated dependency # Ignore failure, in case some compiler does not support this %.o: $(BOUT_CONFIG_FILE) %.cxx @echo " Compiling " $(@:.o=.cxx) @$(CXX) $(BOUT_INCLUDE) $(BOUT_FLAGS) -c $(@:.o=.cxx) -o $@ ifeq ("$(TARGET)","libfast") test "$@" = "bout++-time.o" || touch $(BOUT_TOP)/lib/.last.o.file endif #################################################################### # Clean target. Pretty self explanatory. # NOTE: See that double colon (::) below? That's signifies a rule that can be added to later # See: # http://owen.sj.ca.us/~rk/howto/slides/make/slides/makecolon.html #################################################################### clean:: -@$(RM) -rf $(OBJ) $(DEPS) $(TARGET) @for pp in $(DIRS) $(DIRS_CLEAN); do echo " " cleaning $$pp; $(MAKE) --no-print-directory -C $$pp clean; done @$(RM) -f $(SUB_LIBS) -@$(RM) .*.mk @test -f make.config && ( find src | grep '\.o$$' && echo "WARNING: Some object files remain - which might cause issues. Clean with $(MAKE) clean-remove-object-files" ) || exit 0 clean-remove-object-files: find src|grep '\.o$$' | xargs rm distclean:: clean clean-tests @echo include cleaned # Removing the externalpackage installation. When we have more packages, need a better way @$(RM) -rf $(BOUT_TOP)/include/pvode @echo lib cleaned @$(RM) -rf $(BOUT_TOP)/lib/* -@$(RM) $(BOUT_TOP)/externalpackages/PVODE/lib/*.a -@$(RM) $(BOUT_TOP)/externalpackages/PVODE/source/obj/*.o -@$(RM) $(BOUT_TOP)/externalpackages/PVODE/precon/obj/*.o -@$(RM) -rf $(BOUT_TOP)/autom4te.cache make.config @echo externalpackages cleaned @touch $(BOUT_TOP)/configure @echo autom4te.cache cleaned -@$(RM) $(BOUT_TOP)/tools/pylib/boutconfig/__init__.py @echo generated Python boutconfig module cleaned clean-tests: clean-unit-tests clean-integrated-tests clean-mms-tests clean-unit-tests: @echo " tests/unit cleaned" @$(MAKE) --no-print-directory -C tests/unit clean clean-integrated-tests: @echo " tests/integrated cleaned" @$(MAKE) --no-print-directory -C tests/integrated clean clean-mms-tests: @echo " tests/MMS cleaned" @$(MAKE) --no-print-directory -C tests/MMS clean #################################################################### # Documentation #################################################################### MANUAL_DIR=$(BOUT_TOP)/manual doxygen: $(MAKE) -C $(MANUAL_DIR) doxygen breathe-autogen: $(MAKE) -C $(MANUAL_DIR) breathe_autogen sphinx-docs-html: $(MAKE) -C $(MANUAL_DIR) sphinx-html sphinx-docs-latex: $(MAKE) -C $(MANUAL_DIR) sphinx-pdf manual: $(MAKE) -C $(MANUAL_DIR) manual-html: $(MAKE) -C $(MANUAL_DIR) html manual-pdf: $(MAKE) -C $(MANUAL_DIR) pdf python: libfast $(MAKE) -C tools/pylib python3 python2: libfast $(MAKE) -C tools/pylib python2 python-all:python python2 ###################################################################### # Code coverage ###################################################################### GCOV = LCOV = GENHTML = abs_builddir = /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich # Code coverage # # Optional: # - CODE_COVERAGE_DIRECTORY: Top-level directory for code coverage reporting. # Multiple directories may be specified, separated by whitespace. # (Default: $(top_builddir)) # - CODE_COVERAGE_OUTPUT_FILE: Filename and path for the .info file generated # by lcov for code coverage. (Default: # bout-coverage.info) # - CODE_COVERAGE_OUTPUT_DIRECTORY: Directory for generated code coverage # reports to be created. (Default: # bout-coverage) # - CODE_COVERAGE_BRANCH_COVERAGE: Set to 1 to enforce branch coverage, # set to 0 to disable it and leave empty to stay with the default. # (Default: empty) # - CODE_COVERAGE_LCOV_SHOPTS_DEFAULT: Extra options shared between both lcov # instances. (Default: based on $CODE_COVERAGE_BRANCH_COVERAGE) # - CODE_COVERAGE_LCOV_SHOPTS: Extra options to shared between both lcov # instances. (Default: $CODE_COVERAGE_LCOV_SHOPTS_DEFAULT) # - CODE_COVERAGE_LCOV_OPTIONS_GCOVPATH: --gcov-tool pathtogcov # - CODE_COVERAGE_LCOV_OPTIONS_DEFAULT: Extra options to pass to the # collecting lcov instance. (Default: $CODE_COVERAGE_LCOV_OPTIONS_GCOVPATH) # - CODE_COVERAGE_LCOV_OPTIONS: Extra options to pass to the collecting lcov # instance. (Default: $CODE_COVERAGE_LCOV_OPTIONS_DEFAULT) # - CODE_COVERAGE_LCOV_RMOPTS_DEFAULT: Extra options to pass to the filtering # lcov instance. (Default: empty) # - CODE_COVERAGE_LCOV_RMOPTS: Extra options to pass to the filtering lcov # instance. (Default: $CODE_COVERAGE_LCOV_RMOPTS_DEFAULT) # - CODE_COVERAGE_GENHTML_OPTIONS_DEFAULT: Extra options to pass to the # genhtml instance. (Default: based on $CODE_COVERAGE_BRANCH_COVERAGE) # - CODE_COVERAGE_GENHTML_OPTIONS: Extra options to pass to the genhtml # instance. (Default: $CODE_COVERAGE_GENHTML_OPTIONS_DEFAULT) # - CODE_COVERAGE_IGNORE_PATTERN: Extra glob pattern of files to ignore # # The generated report will be titled using the $(PACKAGE_NAME) and # $(PACKAGE_VERSION). In order to add the current git hash to the title, # use the git-version-gen script, available online. # Optional variables CODE_COVERAGE_DIRECTORY ?= $(abs_builddir) CODE_COVERAGE_OUTPUT_FILE ?= bout-coverage.info CODE_COVERAGE_OUTPUT_DIRECTORY ?= bout-coverage CODE_COVERAGE_BRANCH_COVERAGE ?= CODE_COVERAGE_LCOV_SHOPTS_DEFAULT ?= $(if $(CODE_COVERAGE_BRANCH_COVERAGE),\ --rc lcov_branch_coverage=$(CODE_COVERAGE_BRANCH_COVERAGE)) CODE_COVERAGE_LCOV_SHOPTS ?= $(CODE_COVERAGE_LCOV_SHOPTS_DEFAULT) CODE_COVERAGE_LCOV_OPTIONS_GCOVPATH ?= --gcov-tool "$(GCOV)" CODE_COVERAGE_LCOV_OPTIONS_DEFAULT ?= $(CODE_COVERAGE_LCOV_OPTIONS_GCOVPATH) CODE_COVERAGE_LCOV_OPTIONS ?= $(CODE_COVERAGE_LCOV_OPTIONS_DEFAULT) CODE_COVERAGE_LCOV_RMOPTS_DEFAULT ?= CODE_COVERAGE_LCOV_RMOPTS ?= $(CODE_COVERAGE_LCOV_RMOPTS_DEFAULT) CODE_COVERAGE_GENHTML_OPTIONS_DEFAULT ?=\ $(if $(CODE_COVERAGE_BRANCH_COVERAGE),\ --rc genhtml_branch_coverage=$(CODE_COVERAGE_BRANCH_COVERAGE)) CODE_COVERAGE_GENHTML_OPTIONS ?= $(CODE_COVERAGE_GENHTML_OPTIONS_DEFAULT) CODE_COVERAGE_IGNORE_PATTERN ?= "*test*/*" # Use recursive makes in order to ignore errors during check check-code-coverage: @echo "Need to reconfigure with --enable-code-coverage" # Capture code coverage data code-coverage-capture: code-coverage-capture-hook @echo "Need to reconfigure with --enable-code-coverage" # Hook rule executed before code-coverage-capture, overridable by the user code-coverage-capture-hook: GITIGNOREFILES ?= GITIGNOREFILES += $(CODE_COVERAGE_OUTPUT_FILE) $(CODE_COVERAGE_OUTPUT_DIRECTORY) .PHONY: check-code-coverage code-coverage-capture code-coverage-capture-hook code-coverage-clean + make -j2 shared Compiling field.cxx Compiling nc_format.cxx Compiling ncxx4.cxx In file included from ../../include/field.hxx:41, from field.cxx:28: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../include/field.hxx:34: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../include/bout/scorepwrapper.hxx:5, from ../../../../include/bout/deriv_store.hxx:37, from ../../../../include/bout/mesh.hxx:49, from ncxx4.cxx:27: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../../include/dataformat.hxx:40, from ncxx4.hxx:48, from ncxx4.cxx:23: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling field2d.cxx In file included from /usr/include/mpich-x86_64/ncFile.h:2, from /usr/include/mpich-x86_64/netcdf:16, from ncxx4.hxx:51: /usr/include/mpich-x86_64/ncGroup.h: At global scope: /usr/include/mpich-x86_64/ncGroup.h:18:14: warning: 'netCDF::file_id' defined but not used [-Wunused-variable] 18 | static int file_id; | ^~~~~~~ In file included from ../../include/field.hxx:41, from ../../include/field2d.hxx:34, from field2d.cxx:33: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/globals.hxx:30, from field2d.cxx:31: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling pnetcdf.cxx Compiling h5_format.cxx Compiling field3d.cxx In file included from ../../../../include/utils.hxx:38, from h5_format.cxx:28: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../../include/dataformat.hxx:40, from ../../../../include/datafile.hxx:20, from ../../../../include/globals.hxx:30, from h5_format.cxx:23: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/field.hxx:41, from ../../include/field3d.hxx:30, from field3d.cxx:33: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/globals.hxx:30, from field3d.cxx:29: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling datafile.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from datafile.cxx:39: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/globals.hxx:30, from datafile.cxx:38: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling fieldperp.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from fieldperp.cxx:31: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/globals.hxx:30, from fieldperp.cxx:27: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling field_data.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from field_data.cxx:2: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../include/msg_stack.hxx:35: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling dataformat.cxx Compiling fieldgroup.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from dataformat.cxx:2: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../include/msg_stack.hxx:35: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/field.hxx:41, from ../../include/field3d.hxx:30, from ../../include/bout/fieldgroup.hxx:5, from fieldgroup.cxx:2: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../include/field_data.hxx:37, from ../../include/bout/fieldgroup.hxx:4: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling field_factory.cxx Compiling formatfactory.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ../../include/field_factory.hxx:32, from field_factory.cxx:24: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/globals.hxx:30, from field_factory.cxx:22: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/utils.hxx:38, from formatfactory.cxx:15: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/globals.hxx:30, from formatfactory.cxx:2: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/mpich-x86_64/ncFile.h:2, from /usr/include/mpich-x86_64/netcdf:16, from impls/netcdf4/ncxx4.hxx:51, from formatfactory.cxx:8: /usr/include/mpich-x86_64/ncGroup.h: At global scope: /usr/include/mpich-x86_64/ncGroup.h:18:14: warning: 'netCDF::file_id' defined but not used [-Wunused-variable] 18 | static int file_id; | ^~~~~~~ Compiling fieldgenerators.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ../../include/field_factory.hxx:32, from fieldgenerators.hxx:11, from fieldgenerators.cxx:2: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../include/boutexception.hxx:7, from fieldgenerators.hxx:10: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling initialprofiles.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from initialprofiles.cxx:39: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../include/msg_stack.hxx:35: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling vecops.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from vecops.cxx:27: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../include/msg_stack.hxx:35: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling vector2d.cxx In file included from ../../include/field.hxx:41, from ../../include/field2d.hxx:34, from ../../include/vector2d.hxx:40, from vector2d.cxx:33: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/globals.hxx:30, from vector2d.cxx:31: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling cyclic.cxx In file included from ../../../../../include/field.hxx:41, from ../../../../../include/field2d.hxx:34, from ../../../../../include/derivs.hxx:32, from cyclic.cxx:38: ../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../../../include/field.hxx:34: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling vector3d.cxx In file included from ../../include/field.hxx:41, from ../../include/field3d.hxx:30, from ../../include/vector3d.hxx:37, from vector3d.cxx:33: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/globals.hxx:30, from vector3d.cxx:31: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling invert_parderiv.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/invert_parderiv.hxx:34, from invert_parderiv.cxx:30: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../include/field.hxx:34: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling where.cxx Compiling parderiv_factory.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from where.cxx:26: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../include/msg_stack.hxx:35: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/invert_parderiv.hxx:34, from parderiv_factory.cxx:3: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../include/field.hxx:34: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling globalfield.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ../../include/bout/globalfield.hxx:12, from globalfield.cxx:2: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../include/msg_stack.hxx:35: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling serial_tri.cxx In file included from ../../../../../include/field.hxx:41, from ../../../../../include/fieldperp.hxx:31, from ../../../../../include/invert_laplace.hxx:41, from serial_tri.hxx:32, from serial_tri.cxx:28: ../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../../../include/dataformat.hxx:40, from ../../../../../include/datafile.hxx:20, from ../../../../../include/globals.hxx:30, from serial_tri.cxx:27: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling generated_fieldops.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from generated_fieldops.cxx:2: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../include/msg_stack.hxx:35: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling serial_band.cxx In file included from ../../../../../include/field.hxx:41, from ../../../../../include/fieldperp.hxx:31, from ../../../../../include/invert_laplace.hxx:41, from serial_band.hxx:32, from serial_band.cxx:28: ../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../../../include/dataformat.hxx:40, from ../../../../../include/datafile.hxx:20, from ../../../../../include/globals.hxx:30, from serial_band.cxx:27: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling boutmesh.cxx In file included from ../../../../include/bout/scorepwrapper.hxx:5, from ../../../../include/bout/deriv_store.hxx:37, from ../../../../include/bout/mesh.hxx:49, from boutmesh.hxx:7, from boutmesh.cxx:36: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../../../include/msg_stack.hxx:35: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling pdd.cxx In file included from ../../../../../include/bout/bout_enum_class.hxx:27, from ../../../../../include/fft.hxx:33, from pdd.cxx:34: ../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../../../../include/boutexception.hxx:7, from pdd.cxx:33: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../../include/bout/array.hxx:31, from ../../../../include/utils.hxx:36, from ../../../../include/options.hxx:45, from ../../../../include/bout/deriv_store.hxx:42: In member function 'std::__shared_ptr, (__gnu_cxx::_Lock_policy)2>::operator bool() const', inlined from 'std::operator== >(std::shared_ptr > const&, decltype(nullptr))bool' at /usr/include/c++/13/bits/shared_ptr.h:562:14, inlined from 'Array >::empty() const' at ../../../../include/bout/array.hxx:202:16, inlined from 'Field3D::isAllocated() const' at ../../../../include/field3d.hxx:206:48, inlined from 'BoutMesh::pack_data(std::vector > const&, int, int, int, int, double*)' at boutmesh.cxx:2029:7: /usr/include/c++/13/bits/shared_ptr_base.h:1670:16: warning: potential null pointer dereference [-Wnull-dereference] 1670 | { return _M_ptr != nullptr; } | ^~~~~~ In member function 'std::__shared_ptr, (__gnu_cxx::_Lock_policy)2>::operator bool() const', inlined from 'std::operator== >(std::shared_ptr > const&, decltype(nullptr))bool' at /usr/include/c++/13/bits/shared_ptr.h:562:14, inlined from 'Array >::empty() const' at ../../../../include/bout/array.hxx:202:16, inlined from 'Field2D::isAllocated() const' at ../../../../include/field2d.hxx:104:48, inlined from 'BoutMesh::pack_data(std::vector > const&, int, int, int, int, double*)' at boutmesh.cxx:2040:7: /usr/include/c++/13/bits/shared_ptr_base.h:1670:16: warning: potential null pointer dereference [-Wnull-dereference] 1670 | { return _M_ptr != nullptr; } | ^~~~~~ Compiling spt.cxx In file included from ../../../../../include/bout/scorepwrapper.hxx:5, from ../../../../../include/bout/deriv_store.hxx:37, from ../../../../../include/bout/mesh.hxx:49, from spt.cxx:35: ../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../../../../include/msg_stack.hxx:35: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling shiftedmetric.cxx Compiling petsc_laplace.cxx In file included from ../../../include/bout/scorepwrapper.hxx:5, from ../../../include/bout/deriv_store.hxx:37, from ../../../include/bout/mesh.hxx:49, from shiftedmetric.cxx:10: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../../include/msg_stack.hxx:35: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../../include/utils.hxx:38, from ../../../../../include/options.hxx:45, from petsc_laplace.hxx:66, from petsc_laplace.cxx:28: ../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../../../include/dataformat.hxx:40, from ../../../../../include/datafile.hxx:20, from ../../../../../include/globals.hxx:30, from petsc_laplace.hxx:63: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling fci.cxx Compiling mumps_laplace.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/bout/paralleltransform.hxx:10, from fci.hxx:29, from fci.cxx:39: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../include/field.hxx:34: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../../include/field.hxx:41, from ../../../../../include/fieldperp.hxx:31, from ../../../../../include/invert_laplace.hxx:41, from mumps_laplace.hxx:31, from mumps_laplace.cxx:26: ../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../../../include/field.hxx:34: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling cyclic_laplace.cxx In file included from ../../../../../include/bout/scorepwrapper.hxx:5, from ../../../../../include/bout/deriv_store.hxx:37, from ../../../../../include/bout/mesh.hxx:49, from cyclic_laplace.cxx:38: ../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../../../include/dataformat.hxx:40, from ../../../../../include/datafile.hxx:20, from ../../../../../include/globals.hxx:30, from cyclic_laplace.cxx:36: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling identity.cxx In file included from ../../../include/bout/scorepwrapper.hxx:5, from ../../../include/bout/deriv_store.hxx:37, from ../../../include/bout/mesh.hxx:49, from identity.cxx:9: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../../include/msg_stack.hxx:35: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling gridfromoptions.cxx Compiling shoot_laplace.cxx In file included from ../../../include/utils.hxx:38, from ../../../include/options.hxx:45, from ../../../include/bout/griddata.hxx:31, from gridfromoptions.cxx:2: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/stdexcept:38, from /usr/include/c++/13/system_error:43, from /usr/include/c++/13/bits/ios_base.h:46, from /usr/include/c++/13/streambuf:43, from ../../../include/multiostream.hxx:4, from ../../../include/output.hxx:32, from ../../../include/options.hxx:44: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../../include/field.hxx:41, from ../../../../../include/fieldperp.hxx:31, from ../../../../../include/invert_laplace.hxx:41, from shoot_laplace.hxx:33, from shoot_laplace.cxx:34: ../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../../../include/field.hxx:34: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling multigrid_laplace.cxx Compiling gridfromfile.cxx In file included from ../../../include/utils.hxx:38, from ../../../include/options.hxx:45, from ../../../include/bout/griddata.hxx:31, from gridfromfile.cxx:3: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/stdexcept:38, from /usr/include/c++/13/system_error:43, from /usr/include/c++/13/bits/ios_base.h:46, from /usr/include/c++/13/streambuf:43, from ../../../include/multiostream.hxx:4, from ../../../include/output.hxx:32, from ../../../include/options.hxx:44: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../../include/utils.hxx:38, from ../../../../../include/options.hxx:45, from multigrid_laplace.hxx:38, from multigrid_laplace.cxx:30: ../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../../../include/dataformat.hxx:40, from ../../../../../include/datafile.hxx:20, from ../../../../../include/globals.hxx:30, from multigrid_laplace.hxx:36: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling bilinear.cxx In file included from ../../../include/bout/scorepwrapper.hxx:5, from ../../../include/bout/deriv_store.hxx:37, from ../../../include/bout/mesh.hxx:49, from bilinear.cxx:23: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../../include/msg_stack.hxx:35: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling multigrid_alg.cxx In file included from ../../../../../include/utils.hxx:38, from ../../../../../include/options.hxx:45, from multigrid_laplace.hxx:38, from multigrid_alg.cxx:30: ../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../../../include/dataformat.hxx:40, from ../../../../../include/datafile.hxx:20, from ../../../../../include/globals.hxx:30, from multigrid_laplace.hxx:36: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling hermite_spline.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/interpolation.hxx:31, from hermite_spline.cxx:24: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/globals.hxx:30, from hermite_spline.cxx:23: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling multigrid_solver.cxx In file included from ../../../../../include/utils.hxx:38, from ../../../../../include/options.hxx:45, from multigrid_laplace.hxx:38, from multigrid_solver.cxx:30: ../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../../../include/dataformat.hxx:40, from ../../../../../include/datafile.hxx:20, from ../../../../../include/globals.hxx:30, from multigrid_laplace.hxx:36: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling naulin_laplace.cxx Compiling monotonic_hermite_spline.cxx In file included from ../../../../../include/bout/scorepwrapper.hxx:5, from ../../../../../include/bout/deriv_store.hxx:37, from ../../../../../include/bout/mesh.hxx:49, from naulin_laplace.cxx:140: ../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../../../../include/boutexception.hxx:7, from naulin_laplace.cxx:139: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/interpolation.hxx:31, from monotonic_hermite_spline.cxx:24: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/globals.hxx:30, from monotonic_hermite_spline.cxx:23: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling lagrange_4pt.cxx In file included from ../../../include/bout/scorepwrapper.hxx:5, from ../../../include/bout/deriv_store.hxx:37, from ../../../include/bout/mesh.hxx:49, from lagrange_4pt.cxx:23: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../../include/msg_stack.hxx:35: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling invert_laplace.cxx In file included from ../../../include/bout/scorepwrapper.hxx:5, from ../../../include/bout/deriv_store.hxx:37, from ../../../include/bout/mesh.hxx:49, from invert_laplace.cxx:34: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../../include/msg_stack.hxx:35: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ invert_laplace.cxx: In constructor 'Laplacian::Laplacian(Options*, CELL_LOC, Mesh*)': invert_laplace.cxx:100:24: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations] 100 | Laplacian::setFlags(flags); | ~~~~~~~~~~~~~~~~~~~^~~~~~~ In file included from invert_laplace.cxx:36: ../../../include/invert_laplace.hxx:189:16: note: declared here 189 | virtual void setFlags(int f); | ^~~~~~~~ invert_laplace.cxx: In function 'int invert_laplace(const FieldPerp&, FieldPerp&, int, const Field2D*, const Field2D*, const Field2D*)': invert_laplace.cxx:770:16: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations] 770 | lap->setFlags(flags); | ~~~~~~~~~~~~~^~~~~~~ ../../../include/invert_laplace.hxx:189:16: note: declared here 189 | virtual void setFlags(int f); | ^~~~~~~~ invert_laplace.cxx: In function 'int invert_laplace(const Field3D&, Field3D&, int, const Field2D*, const Field2D*, const Field2D*)': invert_laplace.cxx:800:16: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations] 800 | lap->setFlags(flags); | ~~~~~~~~~~~~~^~~~~~~ ../../../include/invert_laplace.hxx:189:16: note: declared here 189 | virtual void setFlags(int f); | ^~~~~~~~ invert_laplace.cxx: In function 'const Field3D invert_laplace(const Field3D&, int, const Field2D*, const Field2D*, const Field2D*)': invert_laplace.cxx:831:16: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations] 831 | lap->setFlags(flags); | ~~~~~~~~~~~~~^~~~~~~ ../../../include/invert_laplace.hxx:189:16: note: declared here 189 | virtual void setFlags(int f); | ^~~~~~~~ Compiling interpolation_factory.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/interpolation.hxx:31, from ../../../include/interpolation_factory.hxx:4, from interpolation_factory.cxx:1: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../include/field.hxx:34: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling laplacefactory.cxx In file included from ../../../include/field.hxx:41, from ../../../include/fieldperp.hxx:31, from ../../../include/invert_laplace.hxx:41, from laplacefactory.hxx:7, from laplacefactory.cxx:6: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/globals.hxx:30, from laplacefactory.cxx:2: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling difops.cxx In file included from ../../include/utils.hxx:38, from ../../include/options.hxx:45, from ../../include/bout/solver.hxx:42, from difops.cxx:27: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/globals.hxx:30, from difops.cxx:26: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling laplacexy.cxx In file included from ../../../include/bout/scorepwrapper.hxx:5, from ../../../include/bout/deriv_store.hxx:37, from ../../../include/bout/mesh.hxx:49, from ../../../include/bout/invert/laplacexy.hxx:69, from laplacexy.cxx:6: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/sstream:40, from /usr/include/c++/13/complex:45, from /usr/include/mpich-x86_64/petsc/petscsystypes.h:315, from /usr/include/mpich-x86_64/petsc/petscsys.h:47, from /usr/include/mpich-x86_64/petsc/petscvec.h:9, from /usr/include/mpich-x86_64/petsc/petscmat.h:6, from /usr/include/mpich-x86_64/petsc/petscpc.h:6, from /usr/include/mpich-x86_64/petsc/petscksp.h:6, from laplacexy.cxx:4: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling interpolation.cxx In file included from ../../include/field.hxx:41, from ../../include/field3d.hxx:30, from ../../include/interpolation.hxx:31, from interpolation.cxx:27: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/globals.hxx:30, from interpolation.cxx:26: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling mesh.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from mesh.cxx:3: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/globals.hxx:30, from mesh.cxx:2: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling laplacexz-cyclic.cxx In file included from ../../../../../include/utils.hxx:38, from ../../../../../include/options.hxx:45, from ../../../../../include/bout/invert/laplacexz.hxx:34, from laplacexz-cyclic.hxx:2, from laplacexz-cyclic.cxx:1: ../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/stdexcept:38, from /usr/include/c++/13/system_error:43, from /usr/include/c++/13/bits/ios_base.h:46, from /usr/include/c++/13/streambuf:43, from ../../../../../include/multiostream.hxx:4, from ../../../../../include/output.hxx:32, from ../../../../../include/options.hxx:44: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling laplacexz-petsc.cxx In file included from ../../../../../include/utils.hxx:38, from ../../../../../include/options.hxx:45, from ../../../../../include/bout/invert/laplacexz.hxx:34, from laplacexz-petsc.hxx:12, from laplacexz-petsc.cxx:11: ../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/stdexcept:38, from /usr/include/c++/13/system_error:43, from /usr/include/c++/13/bits/ios_base.h:46, from /usr/include/c++/13/streambuf:43, from ../../../../../include/multiostream.hxx:4, from ../../../../../include/output.hxx:32, from ../../../../../include/options.hxx:44: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling boundary_standard.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from boundary_standard.cxx:1: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../include/msg_stack.hxx:35: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling laplacexz.cxx In file included from ../../../include/utils.hxx:38, from ../../../include/options.hxx:45, from ../../../include/bout/invert/laplacexz.hxx:34, from impls/cyclic/laplacexz-cyclic.hxx:2, from laplacexz.cxx:1: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/stdexcept:38, from /usr/include/c++/13/system_error:43, from /usr/include/c++/13/bits/ios_base.h:46, from /usr/include/c++/13/streambuf:43, from ../../../include/multiostream.hxx:4, from ../../../include/output.hxx:32, from ../../../include/options.hxx:44: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling boundary_factory.cxx In file included from ../../include/field.hxx:41, from ../../include/field2d.hxx:34, from ../../include/boundary_op.hxx:9, from ../../include/boundary_factory.hxx:7, from boundary_factory.cxx:2: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/globals.hxx:30, from boundary_factory.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling fft_fftw.cxx In file included from ../../include/utils.hxx:38, from ../../include/options.hxx:45, from fft_fftw.cxx:29: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/globals.hxx:30, from fft_fftw.cxx:28: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling boundary_region.cxx Compiling lapack_routines.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from boundary_region.cxx:2: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../include/msg_stack.hxx:35: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/utils.hxx:38, from lapack_routines.cxx:41: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/globals.hxx:30, from lapack_routines.cxx:38: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling physicsmodel.cxx Compiling meshfactory.cxx In file included from ../../include/field.hxx:41, from ../../include/field3d.hxx:30, from ../../include/difops.hxx:39, from ../../include/bout.hxx:41, from ../../include/bout/physicsmodel.hxx:40, from physicsmodel.cxx:32: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/bout.hxx:40: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from meshfactory.hxx:7, from meshfactory.cxx:2: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../include/msg_stack.hxx:35: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling surfaceiter.cxx Compiling smoothing.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ../../include/bout/surfaceiter.hxx:10, from surfaceiter.cxx:2: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../include/msg_stack.hxx:35: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from smoothing.cxx:35: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../include/msg_stack.hxx:35: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling coordinates.cxx In file included from ../../include/field.hxx:41, from ../../include/field3d.hxx:30, from ../../include/bout/paralleltransform.hxx:10, from ../../include/bout/coordinates.hxx:36, from coordinates.cxx:9: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../include/bout/../boutexception.hxx:7, from ../../include/bout/assert.hxx:20, from coordinates.cxx:7: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling sourcex.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from sourcex.cxx:8: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/globals.hxx:30, from sourcex.cxx:5: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling gyro_average.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from gyro_average.cxx:30: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../include/msg_stack.hxx:35: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ gyro_average.cxx: In function 'Field3D gyroPade0(const Field3D&, BoutReal, int)': gyro_average.cxx:170:16: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations] 170 | lap->setFlags(flags); | ~~~~~~~~~~~~~^~~~~~~ In file included from ../../include/gyro_average.hxx:36, from gyro_average.cxx:34: ../../include/invert_laplace.hxx:189:16: note: declared here 189 | virtual void setFlags(int f); | ^~~~~~~~ gyro_average.cxx: In function 'Field3D gyroPade0(const Field3D&, const Field2D&, int)': gyro_average.cxx:187:16: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations] 187 | lap->setFlags(flags); | ~~~~~~~~~~~~~^~~~~~~ ../../include/invert_laplace.hxx:189:16: note: declared here 189 | virtual void setFlags(int f); | ^~~~~~~~ gyro_average.cxx: In function 'Field3D gyroPade0(const Field3D&, const Field3D&, int)': gyro_average.cxx:194:19: warning: 'Field3D gyroPade0(const Field3D&, const Field2D&, int)' is deprecated: Please use version with separate inner_boundary_flags and outer_boundary_flags [-Wdeprecated-declarations] 194 | return gyroPade0(f, DC(rho), flags); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~ gyro_average.cxx:175:9: note: declared here 175 | Field3D gyroPade0(const Field3D& f, const Field2D& rho, int flags) { | ^~~~~~~~~ gyro_average.cxx: In function 'Field3D gyroPade1(const Field3D&, BoutReal, int)': gyro_average.cxx:209:16: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations] 209 | lap->setFlags(flags); | ~~~~~~~~~~~~~^~~~~~~ ../../include/invert_laplace.hxx:189:16: note: declared here 189 | virtual void setFlags(int f); | ^~~~~~~~ gyro_average.cxx: In function 'Field3D gyroPade1(const Field3D&, const Field2D&, int)': gyro_average.cxx:226:16: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations] 226 | lap->setFlags(flags); | ~~~~~~~~~~~~~^~~~~~~ ../../include/invert_laplace.hxx:189:16: note: declared here 189 | virtual void setFlags(int f); | ^~~~~~~~ gyro_average.cxx: In function 'Field3D gyroPade1(const Field3D&, const Field3D&, int)': gyro_average.cxx:232:19: warning: 'Field3D gyroPade1(const Field3D&, const Field2D&, int)' is deprecated: Please use version with separate inner_boundary_flags and outer_boundary_flags [-Wdeprecated-declarations] 232 | return gyroPade1(f, DC(rho), flags); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~ gyro_average.cxx:214:9: note: declared here 214 | Field3D gyroPade1(const Field3D& f, const Field2D& rho, int flags) { | ^~~~~~~~~ gyro_average.cxx: In function 'Field2D gyroPade1(const Field2D&, const Field2D&, int)': gyro_average.cxx:238:18: warning: 'Field3D gyroPade1(const Field3D&, const Field2D&, int)' is deprecated: Please use version with separate inner_boundary_flags and outer_boundary_flags [-Wdeprecated-declarations] 238 | tmp = gyroPade1(tmp, rho, flags); | ~~~~~~~~~^~~~~~~~~~~~~~~~~ gyro_average.cxx:214:9: note: declared here 214 | Field3D gyroPade1(const Field3D& f, const Field2D& rho, int flags) { | ^~~~~~~~~ gyro_average.cxx: In function 'Field3D gyroPade2(const Field3D&, BoutReal, int)': gyro_average.cxx:243:39: warning: 'Field3D gyroPade1(const Field3D&, BoutReal, int)' is deprecated: Please use version with separate inner_boundary_flags and outer_boundary_flags [-Wdeprecated-declarations] 243 | Field3D result = gyroPade1(gyroPade1(f, rho, flags), rho, flags); | ~~~~~~~~~^~~~~~~~~~~~~~~ gyro_average.cxx:197:9: note: declared here 197 | Field3D gyroPade1(const Field3D& f, BoutReal rho, int flags) { | ^~~~~~~~~ gyro_average.cxx:243:29: warning: 'Field3D gyroPade1(const Field3D&, BoutReal, int)' is deprecated: Please use version with separate inner_boundary_flags and outer_boundary_flags [-Wdeprecated-declarations] 243 | Field3D result = gyroPade1(gyroPade1(f, rho, flags), rho, flags); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gyro_average.cxx:197:9: note: declared here 197 | Field3D gyroPade1(const Field3D& f, BoutReal rho, int flags) { | ^~~~~~~~~ gyro_average.cxx: In function 'Field3D gyroPade2(const Field3D&, const Field2D&, int)': gyro_average.cxx:251:39: warning: 'Field3D gyroPade1(const Field3D&, const Field2D&, int)' is deprecated: Please use version with separate inner_boundary_flags and outer_boundary_flags [-Wdeprecated-declarations] 251 | Field3D result = gyroPade1(gyroPade1(f, rho, flags), rho, flags); | ~~~~~~~~~^~~~~~~~~~~~~~~ gyro_average.cxx:214:9: note: declared here 214 | Field3D gyroPade1(const Field3D& f, const Field2D& rho, int flags) { | ^~~~~~~~~ gyro_average.cxx:251:29: warning: 'Field3D gyroPade1(const Field3D&, const Field2D&, int)' is deprecated: Please use version with separate inner_boundary_flags and outer_boundary_flags [-Wdeprecated-declarations] 251 | Field3D result = gyroPade1(gyroPade1(f, rho, flags), rho, flags); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gyro_average.cxx:214:9: note: declared here 214 | Field3D gyroPade1(const Field3D& f, const Field2D& rho, int flags) { | ^~~~~~~~~ gyro_average.cxx: In function 'Field3D gyroPade2(const Field3D&, const Field3D&, int)': gyro_average.cxx:260:19: warning: 'Field3D gyroPade2(const Field3D&, const Field2D&, int)' is deprecated: Please use version with separate inner_boundary_flags and outer_boundary_flags [-Wdeprecated-declarations] 260 | return gyroPade2(f, DC(rho), flags); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~ gyro_average.cxx:250:9: note: declared here 250 | Field3D gyroPade2(const Field3D& f, const Field2D& rho, int flags) { | ^~~~~~~~~ Compiling snb.cxx In file included from ../../include/field.hxx:41, from ../../include/field3d.hxx:30, from ../../include/invert_parderiv.hxx:34, from ../../include/bout/snb.hxx:1, from snb.cxx:4: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../include/field.hxx:34: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling index_derivs.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/index_derivs.hxx:37, from index_derivs.cxx:24: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from ../../include/bout/index_derivs.hxx:33: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling parallel_boundary_region.cxx Compiling parallel_boundary_op.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from parallel_boundary_op.cxx:2: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../include/msg_stack.hxx:35: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling fv_ops.cxx In file included from ../../include/bout/../field.hxx:41, from ../../include/bout/../field3d.hxx:30, from ../../include/bout/fv_ops.hxx:9, from fv_ops.cxx:2: ../../include/bout/../msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/bout/../msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../include/bout/../dataformat.hxx:40, from ../../include/bout/../datafile.hxx:20, from ../../include/bout/../globals.hxx:30, from ../../include/bout/fv_ops.hxx:8: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ fv_ops.cxx: In function 'FV::communicateFluxes(Field3D&)': fv_ops.cxx:436:17: warning: 'xout' may be used uninitialized [-Wmaybe-uninitialized] 436 | mesh->wait(xout); | ~~~~~~~~~~^~~~~~ fv_ops.cxx:408:22: note: 'xout' was declared here 408 | comm_handle xin, xout; | ^~~~ Compiling arkode.cxx In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/solver.hxx:42, from arkode.hxx:35, from arkode.cxx:28: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../../../include/boutexception.hxx:7, from ../../../../include/bout/solver.hxx:40: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling pvode.cxx In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/solver.hxx:42, from pvode.hxx:34, from pvode.cxx:26: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../../../include/boutexception.hxx:7, from ../../../../include/bout/solver.hxx:40: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling cvode.cxx In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/solver.hxx:42, from cvode.hxx:34, from cvode.cxx:27: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../../../include/boutexception.hxx:7, from ../../../../include/bout/solver.hxx:40: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling ida.cxx In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/solver.hxx:42, from ida.hxx:35, from ida.cxx:30: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../../../include/boutexception.hxx:7, from ../../../../include/bout/solver.hxx:40: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling petsc.cxx In file included from ../../../../include/field.hxx:41, from ../../../../include/field2d.hxx:34, from petsc.hxx:36, from petsc.cxx:27: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/sstream:40, from /usr/include/c++/13/complex:45, from /usr/include/mpich-x86_64/petsc/petscsystypes.h:315, from /usr/include/mpich-x86_64/petsc/petscsys.h:47, from /usr/include/mpich-x86_64/petsc/petscbag.h:4, from /usr/include/mpich-x86_64/petsc/petsc.h:5, from petsc.hxx:34: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ petsc.cxx: In function 'PetscErrorCode PetscMonitor(TS, PetscInt, PetscReal, Vec, void*)': petsc.cxx:838:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 838 | if (s->interpolate) ierr = TSInterpolate(ts,s->next_output,interpolatedX);CHKERRQ(ierr); | ^~ In file included from /usr/include/mpich-x86_64/petsc/petscsys.h:1207: /usr/include/mpich-x86_64/petsc/petscerror.h:336:24: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 336 | #define PetscCall(...) do { \ | ^~ /usr/include/mpich-x86_64/petsc/petscerror.h:368:22: note: in expansion of macro 'PetscCall' 368 | #define CHKERRQ(...) PetscCall(__VA_ARGS__) | ^~~~~~~~~ petsc.cxx:838:79: note: in expansion of macro 'CHKERRQ' 838 | if (s->interpolate) ierr = TSInterpolate(ts,s->next_output,interpolatedX);CHKERRQ(ierr); | ^~~~~~~ Compiling snes.cxx In file included from ../../../../include/bout/bout_enum_class.hxx:27, from snes.hxx:38, from snes.cxx:4: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../../../include/boutexception.hxx:7, from ../../../../include/bout/bout_enum_class.hxx:26: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling options_ini.cxx In file included from ../../../include/utils.hxx:38, from options_ini.cxx:52: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/sstream:40, from /usr/include/c++/13/complex:45, from ../../../include/dcomplex.hxx:35, from ../../../include/utils.hxx:33: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling imex-bdf2.cxx In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/solver.hxx:42, from imex-bdf2.hxx:45, from imex-bdf2.cxx:4: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../../../include/boutexception.hxx:7, from ../../../../include/bout/solver.hxx:40: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling options_netcdf.cxx In file included from ../../../include/utils.hxx:38, from ../../../include/options.hxx:45, from ../../../include/options_netcdf.hxx:44, from options_netcdf.cxx:4: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/stdexcept:38, from /usr/include/c++/13/system_error:43, from /usr/include/c++/13/bits/ios_base.h:46, from /usr/include/c++/13/streambuf:43, from ../../../include/multiostream.hxx:4, from ../../../include/output.hxx:32, from ../../../include/options.hxx:44: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/mpich-x86_64/ncFile.h:2, from /usr/include/mpich-x86_64/netcdf:16, from options_netcdf.cxx:7: /usr/include/mpich-x86_64/ncGroup.h: At global scope: /usr/include/mpich-x86_64/ncGroup.h:18:14: warning: 'netCDF::file_id' defined but not used [-Wunused-variable] 18 | static int file_id; | ^~~~~~~ Compiling power.cxx Compiling bout_types.cxx In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/solver.hxx:42, from power.hxx:33, from power.cxx:3: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../../../include/boutexception.hxx:7, from ../../../../include/bout/solver.hxx:40: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from bout_types.cxx:4: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../include/boutexception.hxx:7, from bout_types.cxx:2: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling boutexception.cxx In file included from boutexception.cxx:5: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../include/boutexception.hxx:7, from boutexception.cxx:3: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling slepc.cxx Compiling adams_bashforth.cxx Compiling derivs.cxx In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/solver.hxx:42, from adams_bashforth.hxx:31, from adams_bashforth.cxx:1: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../../../include/boutexception.hxx:7, from ../../../../include/bout/solver.hxx:40: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/field.hxx:41, from ../../include/field2d.hxx:34, from ../../include/derivs.hxx:32, from derivs.cxx:42: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/globals.hxx:30, from derivs.cxx:41: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling karniadakis.cxx In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/solver.hxx:42, from karniadakis.hxx:41, from karniadakis.cxx:39: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../../../include/boutexception.hxx:7, from ../../../../include/bout/solver.hxx:40: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling msg_stack.cxx In file included from msg_stack.cxx:28: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../include/msg_stack.hxx:35: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling options.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ../../include/field_factory.hxx:32, from options.cxx:2: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../include/boutexception.hxx:7, from options.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling rk4.cxx In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/solver.hxx:42, from rk4.hxx:36, from rk4.cxx:2: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../../../include/boutexception.hxx:7, from ../../../../include/bout/solver.hxx:40: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling output.cxx In file included from ../../include/utils.hxx:38, from output.cxx:30: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/stdexcept:38, from /usr/include/c++/13/system_error:43, from /usr/include/c++/13/bits/ios_base.h:46, from /usr/include/c++/13/streambuf:43, from ../../include/multiostream.hxx:4, from ../../include/output.hxx:32, from output.cxx:29: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling euler.cxx Compiling utils.cxx In file included from ../../include/utils.hxx:38, from utils.cxx:26: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/sstream:40, from /usr/include/c++/13/complex:45, from ../../include/dcomplex.hxx:35, from ../../include/utils.hxx:33: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/solver.hxx:42, from euler.hxx:36, from euler.cxx:2: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../../../include/boutexception.hxx:7, from ../../../../include/bout/solver.hxx:40: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling optionsreader.cxx In file included from ../../include/utils.hxx:38, from ../../include/options.hxx:45, from ../../include/optionsreader.hxx:37, from optionsreader.cxx:1: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/stdexcept:38, from /usr/include/c++/13/system_error:43, from /usr/include/c++/13/bits/ios_base.h:46, from /usr/include/c++/13/streambuf:43, from ../../include/multiostream.hxx:4, from ../../include/output.hxx:32, from ../../include/options.hxx:44: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling rk3-ssp.cxx Compiling boutcomm.cxx Compiling timer.cxx In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/solver.hxx:42, from rk3-ssp.hxx:42, from rk3-ssp.cxx:2: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../../../include/boutexception.hxx:7, from ../../../../include/bout/solver.hxx:40: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/sys/timer.hxx:11, from timer.cxx:1: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/stdexcept:38, from /usr/include/c++/13/system_error:43, from /usr/include/c++/13/bits/ios_base.h:46, from /usr/include/c++/13/iomanip:42, from ../../include/bout/sys/timer.hxx:8: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling range.cxx Compiling petsclib.cxx In file included from ../../include/utils.hxx:38, from ../../include/options.hxx:45, from petsclib.cxx:5: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/stdexcept:38, from /usr/include/c++/13/system_error:43, from /usr/include/c++/13/bits/ios_base.h:46, from /usr/include/c++/13/streambuf:43, from ../../include/multiostream.hxx:4, from ../../include/output.hxx:32, from ../../include/options.hxx:44: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling rkf45.cxx Compiling expressionparser.cxx In file included from ../../include/utils.hxx:38, from expressionparser.cxx:28: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../include/bout/sys/expressionparser.hxx:33, from expressionparser.cxx:25: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../../../include/utils.hxx:38, from ../../../../../../include/options.hxx:45, from ../../../../../../include/bout/rkscheme.hxx:39, from rkf45.hxx:7, from rkf45.cxx:1: ../../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/stdexcept:38, from /usr/include/c++/13/system_error:43, from /usr/include/c++/13/bits/ios_base.h:46, from /usr/include/c++/13/streambuf:43, from ../../../../../../include/multiostream.hxx:4, from ../../../../../../include/output.hxx:32, from ../../../../../../include/options.hxx:44: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling slepclib.cxx Compiling type_name.cxx In file included from ../../include/field.hxx:41, from ../../include/field2d.hxx:34, from type_name.cxx:3: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../include/field.hxx:34: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling cashkarp.cxx Compiling rkgeneric.cxx In file included from ../../../../../../include/utils.hxx:38, from ../../../../../../include/options.hxx:45, from ../../../../../../include/bout/rkscheme.hxx:39, from cashkarp.hxx:7, from cashkarp.cxx:1: ../../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/stdexcept:38, from /usr/include/c++/13/system_error:43, from /usr/include/c++/13/bits/ios_base.h:46, from /usr/include/c++/13/streambuf:43, from ../../../../../../include/multiostream.hxx:4, from ../../../../../../include/output.hxx:32, from ../../../../../../include/options.hxx:44: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/solver.hxx:42, from rkgeneric.hxx:34, from rkgeneric.cxx:2: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../../../include/boutexception.hxx:7, from ../../../../include/bout/solver.hxx:40: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling rk4simple.cxx In file included from ../../../../../../include/utils.hxx:38, from ../../../../../../include/options.hxx:45, from ../../../../../../include/bout/rkscheme.hxx:39, from rk4simple.hxx:7, from rk4simple.cxx:1: ../../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/stdexcept:38, from /usr/include/c++/13/system_error:43, from /usr/include/c++/13/bits/ios_base.h:46, from /usr/include/c++/13/streambuf:43, from ../../../../../../include/multiostream.hxx:4, from ../../../../../../include/output.hxx:32, from ../../../../../../include/options.hxx:44: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling rkscheme.cxx In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/rkscheme.hxx:39, from rkschemefactory.hxx:7, from rkscheme.cxx:1: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/stdexcept:38, from /usr/include/c++/13/system_error:43, from /usr/include/c++/13/bits/ios_base.h:46, from /usr/include/c++/13/streambuf:43, from ../../../../include/multiostream.hxx:4, from ../../../../include/output.hxx:32, from ../../../../include/options.hxx:44: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling rkf34.cxx In file included from ../../../../../../include/utils.hxx:38, from ../../../../../../include/options.hxx:45, from ../../../../../../include/bout/rkscheme.hxx:39, from rkf34.hxx:7, from rkf34.cxx:1: ../../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/stdexcept:38, from /usr/include/c++/13/system_error:43, from /usr/include/c++/13/bits/ios_base.h:46, from /usr/include/c++/13/streambuf:43, from ../../../../../../include/multiostream.hxx:4, from ../../../../../../include/output.hxx:32, from ../../../../../../include/options.hxx:44: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling rkschemefactory.cxx In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/rkscheme.hxx:39, from rkschemefactory.hxx:7, from rkschemefactory.cxx:1: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/stdexcept:38, from /usr/include/c++/13/system_error:43, from /usr/include/c++/13/bits/ios_base.h:46, from /usr/include/c++/13/streambuf:43, from ../../../../include/multiostream.hxx:4, from ../../../../include/output.hxx:32, from ../../../../include/options.hxx:44: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling solver.cxx In file included from ../../include/utils.hxx:38, from ../../include/options.hxx:45, from ../../include/bout/solver.hxx:42, from solver.cxx:23: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../include/boutexception.hxx:7, from ../../include/bout/solver.hxx:40: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling split-rk.cxx In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/solver.hxx:42, from split-rk.hxx:36, from split-rk.cxx:1: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../../../include/boutexception.hxx:7, from ../../../../include/bout/solver.hxx:40: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling solverfactory.cxx In file included from impls/pvode/pvode.hxx:37, from solverfactory.cxx:12: ../../include/pvode/nvector.h:93: warning: "PVEC_REAL_MPI_TYPE" redefined 93 | #define PVEC_REAL_MPI_TYPE MPI_DOUBLE | In file included from /usr/include/mpich-x86_64/nvector/nvector_parallel.h:44, from impls/arkode/arkode.hxx:47, from solverfactory.cxx:4: /usr/include/mpich-x86_64/sundials/sundials_mpi_types.h:38: note: this is the location of the previous definition 38 | #define PVEC_REAL_MPI_TYPE MPI_SUNREALTYPE | Compiling bout++.cxx In file included from ../../include/utils.hxx:38, from ../../include/options.hxx:45, from ../../include/bout/solver.hxx:42, from ../../include/bout/solverfactory.hxx:8, from solverfactory.cxx:1: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../include/boutexception.hxx:7, from ../../include/bout/generic_factory.hxx:7, from ../../include/bout/solverfactory.hxx:7: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../include/field.hxx:41, from ../include/field2d.hxx:34, from ../include/boundary_op.hxx:9, from ../include/boundary_factory.hxx:7, from bout++.cxx:41: ../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../include/field.hxx:34: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling bout++-time.cxx Creating libbout++.so invert/laplace/impls/spt/spt.cxx: In member function '__ct_base ': invert/laplace/impls/spt/spt.cxx:63:37: warning: argument 1 value '18446744073709551615' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 63 | alldata = new SPT_data[ye - ys + 1]; | ^ /usr/include/c++/13/new:128:26: note: in a call to allocation function 'operator new []' declared here 128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ invert/laplace/impls/pdd/pdd.cxx: In member function 'solve': invert/laplace/impls/pdd/pdd.cxx:83:38: warning: argument 1 value '18446744073709551615' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 83 | data = new PDD_data[ye - ys + 1]; | ^ /usr/include/c++/13/new:128:26: note: in a call to allocation function 'operator new []' declared here 128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ Creating libbout++.so src/invert/laplace/impls/spt/spt.cxx: In member function '__ct_base ': src/invert/laplace/impls/spt/spt.cxx:63:37: warning: argument 1 value '18446744073709551615' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 63 | alldata = new SPT_data[ye - ys + 1]; | ^ /usr/include/c++/13/new:128:26: note: in a call to allocation function 'operator new []' declared here 128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ src/invert/laplace/impls/pdd/pdd.cxx: In member function 'solve': src/invert/laplace/impls/pdd/pdd.cxx:83:38: warning: argument 1 value '18446744073709551615' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 83 | data = new PDD_data[ye - ys + 1]; | ^ /usr/include/c++/13/new:128:26: note: in a call to allocation function 'operator new []' declared here 128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ + ls -l lib total 74864 lrwxrwxrwx. 1 mockbuild mock 18 Apr 4 13:47 libbout++.so -> libbout++.so.4.4.0 -rwxr-xr-x. 1 mockbuild mock 75137488 Apr 4 13:47 libbout++.so.4.4.0 -rw-r--r--. 1 mockbuild mock 969146 Apr 4 13:40 libpvode.a lrwxrwxrwx. 1 mockbuild mock 17 Apr 4 13:47 libpvode.so -> libpvode.so.1.0.0 -rwxr-xr-x. 1 mockbuild mock 255344 Apr 4 13:47 libpvode.so.1.0.0 -rw-r--r--. 1 mockbuild mock 213578 Apr 4 13:40 libpvpre.a lrwxrwxrwx. 1 mockbuild mock 17 Apr 4 13:47 libpvpre.so -> libpvpre.so.1.0.0 -rwxr-xr-x. 1 mockbuild mock 71928 Apr 4 13:47 libpvpre.so.1.0.0 + make -j2 python make -C tools/pylib python3 make[1]: Entering directory '/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tools/pylib' PY=python3 make -C _boutcore_build pseudoinstall make[2]: Entering directory '/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tools/pylib/_boutcore_build' Generating boutcore.pyx Generating setup.py Generating helper.cxx Generating helper.h Generating resolve_enum.pxd resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied Generating boutcpp.pxd warning: resolve_enum.pxd:49:25: 'deflt' redeclared warning: resolve_enum.pxd:189:28: 'Standard' redeclared warning: resolve_enum.pxd:223:19: 'Standard' redeclared Compiling boutcore.pyx because it changed. [1/1] Cythonizing boutcore.pyx running build_ext building 'boutcore' extension creating build creating build/temp.linux-x86_64-cpython-311 mpic++ -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include -I/usr/include -I/usr/include -I/usr/include/mpich-x86_64/petsc -I/usr/include/python3.11 -c boutcore.cpp -o build/temp.linux-x86_64-cpython-311/boutcore.o -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DHAS_PRETTY_FUNCTION -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -DSIGHANDLE -DLOGCOLOR -DBOUT_VERSION_STRING=4.4.2 -DBOUT_VERSION_DOUBLE=4.42 -DBACKTRACE -fPIC -DBOUT_HAS_FFTW -DNCDF4 -DHDF5 -DBOUT_HAS_PETSC -DBOUT_HAS_IDA -DBOUT_HAS_CVODE -DBOUT_HAS_ARKODE -DBOUT_HAS_PVODE -DBOUT_HAS_GETTEXT -DBOUT_LOCALE_PATH=/usr/share/locale -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DHAS_PRETTY_FUNCTION -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -DSIGHANDLE -DLOGCOLOR -DBOUT_VERSION_STRING=4.4.2 -DBOUT_VERSION_DOUBLE=4.42 -DBACKTRACE -fPIC -DBOUT_HAS_FFTW -DNCDF4 -DHDF5 -DBOUT_HAS_PETSC -DBOUT_HAS_IDA -DBOUT_HAS_CVODE -DBOUT_HAS_ARKODE -DBOUT_HAS_PVODE -DBOUT_HAS_GETTEXT -DBOUT_LOCALE_PATH=/usr/share/locale -DBOUT_FLAGS_STRING=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DHAS_PRETTY_FUNCTION -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -DSIGHANDLE -DLOGCOLOR -DBOUT_VERSION_STRING=4.4.2 -DBOUT_VERSION_DOUBLE=4.42 -DBACKTRACE -fPIC -DBOUT_HAS_FFTW -DNCDF4 -DHDF5 -DBOUT_HAS_PETSC -DBOUT_HAS_IDA -DBOUT_HAS_CVODE -DBOUT_HAS_ARKODE -DBOUT_HAS_PVODE -DBOUT_HAS_GETTEXT -DBOUT_LOCALE_PATH=/usr/share/locale -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DHAS_PRETTY_FUNCTION -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -DSIGHANDLE -DLOGCOLOR -DBOUT_VERSION_STRING=4.4.2 -DBOUT_VERSION_DOUBLE=4.42 -DBACKTRACE -fPIC -DBOUT_HAS_FFTW -DNCDF4 -DHDF5 -DBOUT_HAS_PETSC -DBOUT_HAS_IDA -DBOUT_HAS_CVODE -DBOUT_HAS_ARKODE -DBOUT_HAS_PVODE -DBOUT_HAS_GETTEXT -DBOUT_LOCALE_PATH=/usr/share/locale In file included from /usr/lib64/python3.11/site-packages/numpy/core/include/numpy/ndarraytypes.h:1940, from /usr/lib64/python3.11/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib64/python3.11/site-packages/numpy/core/include/numpy/arrayobject.h:5, from boutcore.cpp:1366: /usr/lib64/python3.11/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ In file included from /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/field.hxx:41, from /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/field3d.hxx:30, from boutcore.cpp:1343: /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/msg_stack.hxx: In destructor ‘MsgStackItem::~MsgStackItem()’: /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/msg_stack.hxx:147:33: warning: ‘bool std::uncaught_exception()’ is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from boutcore.cpp:1337: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ boutcore.cpp: At global scope: boutcore.cpp:33619:45: warning: ‘__pyx_obj_8boutcore_Vector2D* __pyx_f_8boutcore_v2dFromObj(Vector2D)’ defined but not used [-Wunused-function] 33619 | static struct __pyx_obj_8boutcore_Vector2D *__pyx_f_8boutcore_v2dFromObj(Vector2D __pyx_v_i) { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ boutcore.cpp: In function ‘__pyx_f_12resolve_enum_resolve_cell_loc(_object*)’: boutcore.cpp:9074:10: warning: ‘__pyx_r’ may be used uninitialized [-Wmaybe-uninitialized] 9074 | return __pyx_r; | ^~~~~~~ boutcore.cpp:8717:12: note: ‘__pyx_r’ was declared here 8717 | CELL_LOC __pyx_r; | ^~~~~~~ In function ‘__pyx_pf_8boutcore_44bracket(_object*, __pyx_obj_8boutcore_Field3D*, __pyx_obj_8boutcore_Field3D*, _object*, _object*)’, inlined from ‘__pyx_pw_8boutcore_45bracket(_object*, _object* const*, long, _object*)’ at boutcore.cpp:54423:41: boutcore.cpp:54509:64: warning: ‘__pyx_r’ may be used uninitialized [-Wmaybe-uninitialized] 54509 | __pyx_t_1 = ((PyObject *)__pyx_f_8boutcore_f3dFromObj(bracket((__pyx_v_a->cobj[0]), (__pyx_v_b->cobj[0]), __pyx_v_method_, __pyx_v_outloc_))); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 2642, __pyx_L1_error) | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ boutcore.cpp: In function ‘__pyx_pw_8boutcore_45bracket(_object*, _object* const*, long, _object*)’: boutcore.cpp:10585:18: note: ‘__pyx_r’ was declared here 10585 | BRACKET_METHOD __pyx_r; | ^~~~~~~ mpic++ -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include -I/usr/include -I/usr/include -I/usr/include/mpich-x86_64/petsc -I/usr/include/python3.11 -c boutexception_helper.cxx -o build/temp.linux-x86_64-cpython-311/boutexception_helper.o -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DHAS_PRETTY_FUNCTION -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -DSIGHANDLE -DLOGCOLOR -DBOUT_VERSION_STRING=4.4.2 -DBOUT_VERSION_DOUBLE=4.42 -DBACKTRACE -fPIC -DBOUT_HAS_FFTW -DNCDF4 -DHDF5 -DBOUT_HAS_PETSC -DBOUT_HAS_IDA -DBOUT_HAS_CVODE -DBOUT_HAS_ARKODE -DBOUT_HAS_PVODE -DBOUT_HAS_GETTEXT -DBOUT_LOCALE_PATH=/usr/share/locale -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DHAS_PRETTY_FUNCTION -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -DSIGHANDLE -DLOGCOLOR -DBOUT_VERSION_STRING=4.4.2 -DBOUT_VERSION_DOUBLE=4.42 -DBACKTRACE -fPIC -DBOUT_HAS_FFTW -DNCDF4 -DHDF5 -DBOUT_HAS_PETSC -DBOUT_HAS_IDA -DBOUT_HAS_CVODE -DBOUT_HAS_ARKODE -DBOUT_HAS_PVODE -DBOUT_HAS_GETTEXT -DBOUT_LOCALE_PATH=/usr/share/locale -DBOUT_FLAGS_STRING=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DHAS_PRETTY_FUNCTION -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -DSIGHANDLE -DLOGCOLOR -DBOUT_VERSION_STRING=4.4.2 -DBOUT_VERSION_DOUBLE=4.42 -DBACKTRACE -fPIC -DBOUT_HAS_FFTW -DNCDF4 -DHDF5 -DBOUT_HAS_PETSC -DBOUT_HAS_IDA -DBOUT_HAS_CVODE -DBOUT_HAS_ARKODE -DBOUT_HAS_PVODE -DBOUT_HAS_GETTEXT -DBOUT_LOCALE_PATH=/usr/share/locale -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DHAS_PRETTY_FUNCTION -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -DSIGHANDLE -DLOGCOLOR -DBOUT_VERSION_STRING=4.4.2 -DBOUT_VERSION_DOUBLE=4.42 -DBACKTRACE -fPIC -DBOUT_HAS_FFTW -DNCDF4 -DHDF5 -DBOUT_HAS_PETSC -DBOUT_HAS_IDA -DBOUT_HAS_CVODE -DBOUT_HAS_ARKODE -DBOUT_HAS_PVODE -DBOUT_HAS_GETTEXT -DBOUT_LOCALE_PATH=/usr/share/locale mpic++ -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include -I/usr/include -I/usr/include -I/usr/include/mpich-x86_64/petsc -I/usr/include/python3.11 -c helper.cxx -o build/temp.linux-x86_64-cpython-311/helper.o -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DHAS_PRETTY_FUNCTION -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -DSIGHANDLE -DLOGCOLOR -DBOUT_VERSION_STRING=4.4.2 -DBOUT_VERSION_DOUBLE=4.42 -DBACKTRACE -fPIC -DBOUT_HAS_FFTW -DNCDF4 -DHDF5 -DBOUT_HAS_PETSC -DBOUT_HAS_IDA -DBOUT_HAS_CVODE -DBOUT_HAS_ARKODE -DBOUT_HAS_PVODE -DBOUT_HAS_GETTEXT -DBOUT_LOCALE_PATH=/usr/share/locale -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DHAS_PRETTY_FUNCTION -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -DSIGHANDLE -DLOGCOLOR -DBOUT_VERSION_STRING=4.4.2 -DBOUT_VERSION_DOUBLE=4.42 -DBACKTRACE -fPIC -DBOUT_HAS_FFTW -DNCDF4 -DHDF5 -DBOUT_HAS_PETSC -DBOUT_HAS_IDA -DBOUT_HAS_CVODE -DBOUT_HAS_ARKODE -DBOUT_HAS_PVODE -DBOUT_HAS_GETTEXT -DBOUT_LOCALE_PATH=/usr/share/locale -DBOUT_FLAGS_STRING=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DHAS_PRETTY_FUNCTION -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -DSIGHANDLE -DLOGCOLOR -DBOUT_VERSION_STRING=4.4.2 -DBOUT_VERSION_DOUBLE=4.42 -DBACKTRACE -fPIC -DBOUT_HAS_FFTW -DNCDF4 -DHDF5 -DBOUT_HAS_PETSC -DBOUT_HAS_IDA -DBOUT_HAS_CVODE -DBOUT_HAS_ARKODE -DBOUT_HAS_PVODE -DBOUT_HAS_GETTEXT -DBOUT_LOCALE_PATH=/usr/share/locale -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DHAS_PRETTY_FUNCTION -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -DSIGHANDLE -DLOGCOLOR -DBOUT_VERSION_STRING=4.4.2 -DBOUT_VERSION_DOUBLE=4.42 -DBACKTRACE -fPIC -DBOUT_HAS_FFTW -DNCDF4 -DHDF5 -DBOUT_HAS_PETSC -DBOUT_HAS_IDA -DBOUT_HAS_CVODE -DBOUT_HAS_ARKODE -DBOUT_HAS_PVODE -DBOUT_HAS_GETTEXT -DBOUT_LOCALE_PATH=/usr/share/locale In file included from /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/field.hxx:41, from /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/field3d.hxx:30, from helper.cxx:1: /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/msg_stack.hxx: In destructor ‘MsgStackItem::~MsgStackItem()’: /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/msg_stack.hxx:147:33: warning: ‘bool std::uncaught_exception()’ is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/field.hxx:34: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ creating build/lib.linux-x86_64-cpython-311 mpic++ -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-x86_64-cpython-311/boutcore.o build/temp.linux-x86_64-cpython-311/boutexception_helper.o build/temp.linux-x86_64-cpython-311/helper.o -L/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/lib -L/usr/lib64 -L/usr/lib64 -L/usr/lib64/mpich/lib -L/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/lib -L/usr/lib64 -lm -lbout++ -lm -lfftw3 -lnetcdf_c++4 -lnetcdf -lhdf5_hl -lhdf5 -lhdf5_hl -lsz -lz -ldl -lm -lpetsc -lhdf5 -lsundials_ida -lsundials_nvecparallel -lsundials_cvode -lsundials_nvecparallel -lsundials_arkode -lsundials_nvecparallel -lpvode -lpvpre -o build/lib.linux-x86_64-cpython-311/boutcore.cpython-311-x86_64-linux-gnu.so -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes copying build/lib.linux-x86_64-cpython-311/boutcore.cpython-311-x86_64-linux-gnu.so -> cp boutcore*.so .. make[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tools/pylib/_boutcore_build' make[1]: Leaving directory '/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tools/pylib' ++ pwd + export LD_LIBRARY_PATH=/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/lib + LD_LIBRARY_PATH=/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/lib + make -j2 -C manual html make: Entering directory '/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual' cd doxygen && doxygen Doxyfile warning: Tag 'TCL_SUBST' at line 247 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'COLS_IN_ALPHA_INDEX' at line 1056 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'FORMULA_TRANSPARENT' at line 1473 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'LATEX_SOURCE_CODE' at line 1761 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'RTF_SOURCE_CODE' at line 1843 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOCBOOK_PROGRAMLISTING' at line 1941 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'PERL_PATH' at line 2149 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'CLASS_DIAGRAMS' at line 2162 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'MSCGEN_PATH' at line 2171 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOT_FONTNAME' at line 2213 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOT_FONTSIZE' at line 2220 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOT_TRANSPARENT' at line 2439 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: argument 'a4wide' for option PAPER_TYPE is not a valid enum value Using the default: a4! Doxygen version used: 1.9.6 Notice: Output directory 'bout' does not exist. I have created it for you. Searching for include files... Searching for example files... Searching for images... Searching for dot files... Searching for msc files... Searching for dia files... Searching for files to exclude Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/zoidberg Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/wave-slab Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/wave-slab/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/uedge-benchmark Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/uedge-benchmark/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/tokamak-grids Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/tokamak-2fluid Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/tokamak-2fluid/idlTools Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/tokamak-2fluid/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/tokamak-2fluid/d3d-129131 Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/tokamak-2fluid/d3d-119919 Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/subsampling Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/subsampling/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/staggered_grid Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/staggered_grid/test Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/staggered_grid/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/shear-alfven-wave Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/shear-alfven-wave/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/reconnect-2field Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/reconnect-2field/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/preconditioning Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/preconditioning/diffusion-nl Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/IMEX/diffusion-nl/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/preconditioning/wave Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/preconditioning/wave/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/performance Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/performance/tuning_regionblocksize Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/performance/tuning_regionblocksize/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/performance/laplace Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/performance/laplace/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/performance/iterator Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/performance/iterator/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/performance/iterator-offsets Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/performance/iterator-offsets/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/performance/ddz Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/performance/ddz/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/performance/ddy Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/performance/ddy/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/performance/ddx Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/performance/ddx/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/performance/communications Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/performance/bracket Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/performance/bracket/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/performance/arithmetic_3d2d Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/performance/arithmetic_3d2d/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/performance/arithmetic Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/performance/arithmetic/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/orszag-tang Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/orszag-tang/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/monitor Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/monitor/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/monitor-newapi Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/monitor-newapi/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/make-script Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/laplacexy Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/laplacexy/simple Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/laplacexy/simple/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/laplacexy/laplace_perp Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/laplacexy/laplace_perp/torus Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/laplacexy/laplace_perp/square Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/laplacexy/alfven-wave Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/laplacexy/alfven-wave/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/laplacexy/alfven-wave/cbm18 Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/laplace-petsc3d Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/lapd-drift Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/lapd-drift/pisces Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/lapd-drift/lapd Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/lapd-drift/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/jorek-compare Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/jorek-compare/doc Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/jorek-compare/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/invertable_operator Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/invertable_operator/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/hasegawa-wakatani Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/hasegawa-wakatani/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/gyro-gem Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/gyro-gem/doc Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/gyro-gem/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/gravity_reduced Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/gravity_reduced/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/gas-compress Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/gas-compress/sod-shock Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/gas-compress/rayleigh-taylor Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/gas-compress/advect1d Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/finite-volume Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/finite-volume/test Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/finite-volume/test/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/finite-volume/fluid Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/finite-volume/fluid/mms Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/finite-volume/fluid/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/finite-volume/diffusion Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/finite-volume/diffusion/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/fci-wave Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/fci-wave/logn Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/fci-wave/div Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/fci-wave/div-integrate Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/fci-wave-logn Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/fci-wave-logn/expanded Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/fci-wave-logn/div-integrate Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/fci-wave-logn/boundary Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/em-drift Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/em-drift/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/elm-pb Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/elm-pb/test Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/elm-pb/eigen Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/elm-pb/doc Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/elm-pb/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/elm-pb/Python Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/elm-pb/Python/data0 Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/elm-pb/Python/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/eigen-box Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/eigen-box/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/dalf3 Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/dalf3/doc Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/dalf3/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/constraints Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/constraints/drift-wave-constraint Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/IMEX/drift-wave-constraint/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/constraints/laplace-dae Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/constraints/laplace-dae/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/constraints/alfven-wave Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/constraints/alfven-wave/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/constraints/alfven-wave/cbm18 Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/conduction Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/conduction/fromfile Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/conduction/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/conduction-snb Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/conduction-snb/step Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/conduction-snb/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/conducting-wall-mode Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/conducting-wall-mode/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/boutcore Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/boutcore/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/boutcore/blob Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/bout_runners_example Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/bout_runners_example/pre_and_post_processing Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/bout_runners_example/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/bout_runners_example/MMS Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/boundary-conditions Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/boundary-conditions/advection Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/boundary-conditions/advection/upwind Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/boundary-conditions/advection/central-free Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/boundary-conditions/advection/central-free-o3 Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/boundary-conditions/advection/central-dirichlet Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/blob2d Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/blob2d/two_blobs Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/blob2d/delta_10 Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/blob2d/delta_1 Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/blob2d/delta_0.25 Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/blob2d-laplacexz Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/blob2d-laplacexz/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/backtrace Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/backtrace/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/advdiff2 Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/advdiff2/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/advdiff Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/advdiff/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/IMEX Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/IMEX/drift-wave Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/IMEX/drift-wave/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/IMEX/advection-reaction Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/IMEX/advection-reaction/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/IMEX/advection-diffusion Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/IMEX/advection-diffusion/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/6field-simple Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/6field-simple/gfile Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/6field-simple/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/2Dturbulence_multigrid Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/examples/2Dturbulence_multigrid/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tools/ Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tools/vagrant Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tools/tokamak_grids Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tools/tokamak_grids/shifted_circle Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tools/tokamak_grids/pyGridGen Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tools/tokamak_grids/gridgen Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tools/tokamak_grids/gridgen/efit Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tools/tokamak_grids/gridgen/doc Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tools/tokamak_grids/gridgen/bfield Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tools/tokamak_grids/gato Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tools/tokamak_grids/elite Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tools/tokamak_grids/cyclone Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tools/tokamak_grids/coils Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tools/tokamak_grids/coils/surface Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tools/tokamak_grids/all Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tools/slab Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tools/pylib Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tools/pylib/zoidberg Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tools/pylib/post_bout Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tools/pylib/boutconfig Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tools/pylib/bout_runners Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tools/pylib/_boutcore_build Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tools/pylib/_boutcore_build/build Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tools/pylib/_boutcore_build/build/lib.linux-x86_64-cpython-311 Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tools/pylib/_boutcore_build/build/temp.linux-x86_64-cpython-311 Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tools/plasmalib Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tools/pdb2idl Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tools/octave Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tools/numlib Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tools/matlablib Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tools/mathematicalib Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tools/line_tracing_v2 Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tools/line_tracing_v2/doc Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tools/line_tracing_v2/MISC Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tools/line_tracing Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tools/line_tracing/misc Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tools/line_tracing/doc Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tools/idllib Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tools/eigensolver Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tools/eigensolver/GLF_ITG Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tools/cyl_and_helimak_grids Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tools/archiving Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tools/archiving/sdctools Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tools/archiving/sdctools/sdclib Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tools/archiving/pdb2cdf Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tools/archiving/mdsplus Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tools/archiving/mdsplus/manual Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tools/archiving/mdsplus/idl Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tools/archiving/mdsplus/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tools/archiving/dumpsample Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/ Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/workshop2011 Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/user_docs Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/figs Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/figs/zoidberg Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/figs/figure_creators Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/_static Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/_static/css Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/_apidoc Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/doxygen Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/doxygen/bout Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/doxygen/bout/latex Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/doxygen/bout/xml Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/doxygen/bout/html Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/bin/ Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/externalpackages/googletest/ Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/externalpackages/googletest/googletest Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/externalpackages/googletest/googletest/test Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/externalpackages/googletest/googletest/src Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/externalpackages/googletest/googletest/scripts Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/externalpackages/googletest/googletest/scripts/test Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/externalpackages/googletest/googletest/samples Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/externalpackages/googletest/googletest/include Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/externalpackages/googletest/googletest/include/gtest Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/externalpackages/googletest/googletest/include/gtest/internal Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/externalpackages/googletest/googletest/include/gtest/internal/custom Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/externalpackages/googletest/googletest/docs Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/externalpackages/googletest/googletest/cmake Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/externalpackages/googletest/googlemock Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/externalpackages/googletest/googlemock/test Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/externalpackages/googletest/googlemock/src Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/externalpackages/googletest/googlemock/scripts Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/externalpackages/googletest/googlemock/scripts/generator Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/externalpackages/googletest/googlemock/scripts/generator/cpp Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/externalpackages/googletest/googlemock/include Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/externalpackages/googletest/googlemock/include/gmock Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/externalpackages/googletest/googlemock/include/gmock/internal Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/externalpackages/googletest/googlemock/include/gmock/internal/custom Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/externalpackages/googletest/googlemock/docs Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/externalpackages/googletest/googlemock/cmake Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/externalpackages/googletest/docs Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/externalpackages/googletest/docs/reference Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/externalpackages/googletest/docs/assets Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/externalpackages/googletest/docs/assets/css Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/externalpackages/googletest/docs/_sass Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/externalpackages/googletest/docs/_layouts Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/externalpackages/googletest/docs/_data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/externalpackages/googletest/ci Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/ Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/unit Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/unit/sys Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/unit/src Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/unit/solver Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/unit/mesh Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/unit/mesh/parallel Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/unit/mesh/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/unit/invert Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/unit/include Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/unit/include/bout Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/unit/field Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/requirements Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-yupdown Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-yupdown/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-visitor Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-visitor/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-vec Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-vec/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-twistshift Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-twistshift/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-twistshift-staggered Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-twistshift-staggered/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-subdir Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-subdir/fuu Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-subdir/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-subdir/bar Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-stopCheck Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-stopCheck/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-stopCheck-file Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-stopCheck-file/dataSecond Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-stopCheck-file/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-squash Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-squash/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-solver Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-snb Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-snb/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-smooth Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-smooth/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-slepc-solver Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-slepc-solver/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-restarting Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-restarting/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-restart-io_hdf5 Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-restart-io_hdf5/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-restart-io Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-restart-io/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-region-iterator Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-region-iterator/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-petsc_laplace_MAST-grid Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-petsc_laplace_MAST-grid/grids Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-petsc_laplace_MAST-grid/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-petsc_laplace Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-petsc_laplace/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-options-netcdf Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-options-netcdf/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-nonuniform Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-nonuniform/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-naulin-laplace Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-naulin-laplace/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-multigrid_laplace Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-multigrid_laplace/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-laplacexz Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-laplacexz/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-laplacexy Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-laplacexy/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-laplacexy-short Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-laplacexy-short/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-laplace2 Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-laplace2/shoot Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-laplace2/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-laplace Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-laplace/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-io_hdf5 Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-io_hdf5/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-io Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-io/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-invpar Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-invpar/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-invertable-operator Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-invertable-operator/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-interpolate Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-interpolate/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-interchange-instability Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-interchange-instability/data_10 Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-interchange-instability/data_1 Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-integrate Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-integrate/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-initial Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-initial/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-include Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-gyro Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-gyro/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-griddata Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-griddata/screw Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-griddata-yboundary-guards Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-griddata-yboundary-guards/data-singlenull-2 Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-griddata-yboundary-guards/data-singlenull-1 Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-griddata-yboundary-guards/data-singlenull-0 Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-griddata-yboundary-guards/data-doublenull-2 Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-griddata-yboundary-guards/data-doublenull-1 Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-griddata-yboundary-guards/data-doublenull-0 Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-globalfield Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-globalfield/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-fieldgroupComm Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-fieldgroupComm/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-fieldfactory2 Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-fieldfactory2/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-fieldfactory Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-fieldfactory/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-drift-instability Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-drift-instability/doc Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-drift-instability/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-drift-instability-staggered Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-drift-instability-staggered/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-delp2 Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-delp2/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-dataformat Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-dataformat/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-cyclic Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-cyclic/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-coordinates-initialization Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-coordinates-initialization/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-compile-examples Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-compile-examples-petsc Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-command-args Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-collect Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-collect/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-code-style Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-boutcore Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-boutcore/simple-model Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-boutcore/simple-model/mini Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-boutcore/print Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-boutcore/print/test Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-boutcore/mms-ddz Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-boutcore/mms-ddz/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-boutcore/legacy-model Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-boutcore/legacy-model/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-boutcore/collect Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-boutcore/collect/input Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-boutcore/collect-staggered Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-boutcore/collect-staggered/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-bout-override-default-option Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-beuler Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-attribs Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-attribs/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/MMS Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/MMS/wave-1d Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/MMS/wave-1d/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/MMS/wave-1d-y Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/MMS/wave-1d-y/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/MMS/upwinding3 Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/MMS/upwinding3/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/MMS/tokamak Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/MMS/tokamak/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/MMS/time Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/MMS/time/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/MMS/time-petsc Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/MMS/spatial Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/MMS/spatial/fci Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/MMS/spatial/fci/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/MMS/spatial/diffusion Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/MMS/spatial/diffusion/X Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/MMS/spatial/d2dz2 Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/MMS/spatial/d2dz2/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/MMS/spatial/d2dx2 Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/MMS/spatial/d2dx2/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/MMS/spatial/advection Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/MMS/spatial/advection/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/MMS/laplace Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/MMS/laplace/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/MMS/hw Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/MMS/hw/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/MMS/fieldalign Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/MMS/fieldalign/shifted Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/MMS/fieldalign/shear Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/MMS/fieldalign/polshear_shifted Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/MMS/fieldalign/polshear_shear Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/MMS/fieldalign/polshear Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/MMS/fieldalign/orthogonal Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/MMS/fieldalign/nonorthogonal Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/MMS/fieldalign/nonorth_shifted Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/MMS/fieldalign/nonorth_shear Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/MMS/fieldalign/doc Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/MMS/elm-pb Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/MMS/elm-pb/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/MMS/diffusion2 Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/MMS/diffusion2/Z Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/MMS/diffusion2/Y Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/MMS/diffusion2/XYZ Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/MMS/diffusion2/X Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/MMS/diffusion Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/MMS/diffusion/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/MMS/derivatives3 Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/MMS/derivatives3/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/MMS/bracket Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/MMS/bracket/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/MMS/advection Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/MMS/advection/weno3 Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/MMS/advection/weno3/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/MMS/advection/upwind Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/MMS/advection/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/MMS/advection/central Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/MMS/advection/arakawa Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/MMS/GBS Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/MMS/GBS/slab2d Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/MMS/GBS/mms-slab3d Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/MMS/GBS/mms-slab2d Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/MMS/GBS/circle2d Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/MMS/GBS/circle Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/MMS/GBS/blob2d Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/MMS/GBS/beta Searching INPUT for files to process... Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/pvode Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/sys Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/invert Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/options Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/split-rk Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/snes Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/slepc Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/impls Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/impls/rkf45 Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/impls/rkf34 Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/impls/rk4simple Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/impls/cashkarp Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rk4 Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rk3-ssp Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/pvode Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/power Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/petsc Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/karniadakis Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/imex-bdf2 Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/ida Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/euler Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/cvode Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/arkode Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/adams_bashforth Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/physics Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/parallel Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/interpolation Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/impls Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/impls/bout Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/parderiv Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/parderiv/impls Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/parderiv/impls/cyclic Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplacexz Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplacexz/impls Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplacexz/impls/petsc Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplacexz/impls/cyclic Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplacexy Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/spt Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/shoot Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/serial_tri Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/serial_band Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/petsc Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/pdd Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/naulin Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/mumps Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/multigrid Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/cyclic Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4 Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5 Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/field Reading and parsing tag files Parsing files Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/boundary_factory.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/boundary_factory.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/boundary_op.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/boundary_op.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/boundary_region.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/boundary_region.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/boundary_standard.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/boundary_standard.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/array.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/array.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/assert.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/assert.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/bout_enum_class.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/bout_enum_class.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/constants.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/constants.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/coordinates.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/coordinates.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/deprecated.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/deprecated.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/deriv_store.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/deriv_store.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/expr.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/expr.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/field_visitor.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/field_visitor.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/fieldgroup.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/fieldgroup.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/format.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/format.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/fv_ops.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/fv_ops.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/generic_factory.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/generic_factory.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/globalfield.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/globalfield.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/griddata.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/griddata.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/index_derivs.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/index_derivs.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/index_derivs_interface.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/index_derivs_interface.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/invert/laplacexy.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/invert/laplacexy.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/invert/laplacexz.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/invert/laplacexz.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/invertable_operator.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/invertable_operator.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/macro_for_each.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/macro_for_each.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/mesh.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/mesh.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/monitor.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/monitor.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/openmpwrap.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/openmpwrap.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/paralleltransform.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/paralleltransform.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/petsclib.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/petsclib.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/physicsmodel.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/physicsmodel.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/region.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/region.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/rkscheme.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/rkscheme.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/rvec.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/rvec.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/scorepwrapper.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/scorepwrapper.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/slepclib.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/slepclib.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/snb.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/snb.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/solver.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/solver.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/solverfactory.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/solverfactory.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/surfaceiter.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/surfaceiter.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/sys/expressionparser.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/sys/expressionparser.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/sys/gettext.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/sys/gettext.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/sys/range.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/sys/range.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/sys/timer.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/sys/timer.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/sys/type_name.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/sys/type_name.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/sys/uncopyable.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/sys/uncopyable.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/sys/uuid.h... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/sys/uuid.h... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/sys/variant.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/sys/variant.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/template_combinations.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/template_combinations.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/traits.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/traits.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout_types.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout_types.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/boutcomm.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/boutcomm.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/boutexception.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/boutexception.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/boutmain.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/boutmain.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/cyclic_reduction.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/cyclic_reduction.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/datafile.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/datafile.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dcomplex.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dcomplex.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/derivs.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/derivs.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/difops.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/difops.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/fft.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/fft.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/field.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/field.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/field2d.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/field2d.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/field3d.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/field3d.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/field_data.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/field_data.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/field_factory.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/field_factory.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/fieldperp.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/fieldperp.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/globals.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/globals.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/gyro_average.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/gyro_average.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/initialprofiles.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/initialprofiles.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/interpolation.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/interpolation.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/interpolation_factory.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/interpolation_factory.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/invert_laplace.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/invert_laplace.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/invert_parderiv.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/invert_parderiv.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/lapack_routines.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/lapack_routines.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/mask.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/mask.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/msg_stack.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/msg_stack.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/multiostream.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/multiostream.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/options.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/options.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/options_netcdf.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/options_netcdf.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/optionsreader.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/optionsreader.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/output.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/output.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/parallel_boundary_op.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/parallel_boundary_op.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/parallel_boundary_region.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/parallel_boundary_region.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/pvode/band.h... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/pvode/band.h... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/pvode/cvdiag.h... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/pvode/cvdiag.h... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/pvode/cvode.h... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/pvode/cvode.h... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/pvode/cvspgmr.h... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/pvode/cvspgmr.h... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/pvode/iterativ.h... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/pvode/iterativ.h... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/pvode/llnlmath.h... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/pvode/llnlmath.h... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/pvode/llnltyps.h... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/pvode/llnltyps.h... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/pvode/nvector.h... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/pvode/nvector.h... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/pvode/pvbbdpre.h... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/pvode/pvbbdpre.h... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/pvode/smalldense.h... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/pvode/smalldense.h... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/pvode/spgmr.h... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/pvode/spgmr.h... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/pvode/vector.h... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/pvode/vector.h... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/smoothing.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/smoothing.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/sourcex.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/sourcex.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/stencils.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/stencils.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/unused.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/unused.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/utils.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/utils.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/vecops.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/vecops.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/vector2d.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/vector2d.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/vector3d.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/vector3d.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/where.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/where.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/bout++-time.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/bout++-time.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/bout++-time.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/bout++-time.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/bout++.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/bout++.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/field/field.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/field/field.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/field/field2d.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/field/field2d.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/field/field3d.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/field/field3d.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/field/field_data.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/field/field_data.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/field/field_factory.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/field/field_factory.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/field/fieldgenerators.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/field/fieldgenerators.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/field/fieldgenerators.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/field/fieldgenerators.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/field/fieldgroup.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/field/fieldgroup.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/field/fieldperp.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/field/fieldperp.cxx... Reading /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/field/gen_fieldops.py... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/field/gen_fieldops.py... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/field/generated_fieldops.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/field/generated_fieldops.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/field/globalfield.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/field/globalfield.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/field/initialprofiles.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/field/initialprofiles.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/field/vecops.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/field/vecops.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/field/vector2d.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/field/vector2d.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/field/vector3d.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/field/vector3d.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/field/where.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/field/where.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/datafile.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/datafile.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/dataformat.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/dataformat.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/formatfactory.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/formatfactory.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/formatfactory.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/formatfactory.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/fft_fftw.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/fft_fftw.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/lapack_routines.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/lapack_routines.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/cyclic/cyclic_laplace.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/cyclic/cyclic_laplace.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/cyclic/cyclic_laplace.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/cyclic/cyclic_laplace.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/multigrid/multigrid_alg.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/multigrid/multigrid_alg.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/multigrid/multigrid_laplace.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/multigrid/multigrid_laplace.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/multigrid/multigrid_laplace.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/multigrid/multigrid_laplace.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/multigrid/multigrid_solver.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/multigrid/multigrid_solver.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/mumps/mumps_laplace.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/mumps/mumps_laplace.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/mumps/mumps_laplace.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/mumps/mumps_laplace.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/naulin/naulin_laplace.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/naulin/naulin_laplace.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/naulin/naulin_laplace.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/naulin/naulin_laplace.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/pdd/pdd.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/pdd/pdd.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/pdd/pdd.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/pdd/pdd.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/petsc/petsc_laplace.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/petsc/petsc_laplace.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/petsc/petsc_laplace.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/petsc/petsc_laplace.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/serial_band/serial_band.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/serial_band/serial_band.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/serial_band/serial_band.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/serial_band/serial_band.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/serial_tri/serial_tri.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/serial_tri/serial_tri.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/serial_tri/serial_tri.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/serial_tri/serial_tri.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/shoot/shoot_laplace.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/shoot/shoot_laplace.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/shoot/shoot_laplace.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/shoot/shoot_laplace.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/spt/spt.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/spt/spt.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/spt/spt.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/spt/spt.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/invert_laplace.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/invert_laplace.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/laplacefactory.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/laplacefactory.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/laplacefactory.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/laplacefactory.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplacexy/laplacexy.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplacexy/laplacexy.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplacexz/impls/cyclic/laplacexz-cyclic.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplacexz/impls/cyclic/laplacexz-cyclic.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplacexz/impls/cyclic/laplacexz-cyclic.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplacexz/impls/cyclic/laplacexz-cyclic.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplacexz/impls/petsc/laplacexz-petsc.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplacexz/impls/petsc/laplacexz-petsc.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplacexz/impls/petsc/laplacexz-petsc.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplacexz/impls/petsc/laplacexz-petsc.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplacexz/laplacexz.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplacexz/laplacexz.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/parderiv/impls/cyclic/cyclic.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/parderiv/impls/cyclic/cyclic.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/parderiv/impls/cyclic/cyclic.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/parderiv/impls/cyclic/cyclic.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/parderiv/invert_parderiv.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/parderiv/invert_parderiv.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/parderiv/parderiv_factory.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/parderiv/parderiv_factory.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/boundary_factory.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/boundary_factory.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/boundary_region.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/boundary_region.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/boundary_standard.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/boundary_standard.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/coordinates.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/coordinates.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/data/gridfromfile.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/data/gridfromfile.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/data/gridfromoptions.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/data/gridfromoptions.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/difops.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/difops.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/fv_ops.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/fv_ops.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/impls/bout/boutmesh.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/impls/bout/boutmesh.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/impls/bout/boutmesh.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/impls/bout/boutmesh.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/index_derivs.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/index_derivs.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/interpolation.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/interpolation.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/interpolation/bilinear.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/interpolation/bilinear.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/interpolation/hermite_spline.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/interpolation/hermite_spline.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/interpolation/interpolation_factory.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/interpolation/interpolation_factory.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/interpolation/lagrange_4pt.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/interpolation/lagrange_4pt.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/interpolation/monotonic_hermite_spline.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/interpolation/monotonic_hermite_spline.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/mesh.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/mesh.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/meshfactory.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/meshfactory.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/meshfactory.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/meshfactory.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/parallel/fci.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/parallel/fci.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/parallel/fci.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/parallel/fci.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/parallel/identity.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/parallel/identity.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/parallel/shiftedmetric.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/parallel/shiftedmetric.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/parallel_boundary_op.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/parallel_boundary_op.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/parallel_boundary_region.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/parallel_boundary_region.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/surfaceiter.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/surfaceiter.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/physics/gyro_average.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/physics/gyro_average.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/physics/physicsmodel.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/physics/physicsmodel.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/physics/smoothing.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/physics/smoothing.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/physics/snb.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/physics/snb.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/physics/sourcex.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/physics/sourcex.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/adams_bashforth/adams_bashforth.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/adams_bashforth/adams_bashforth.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/adams_bashforth/adams_bashforth.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/adams_bashforth/adams_bashforth.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/arkode/arkode.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/arkode/arkode.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/arkode/arkode.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/arkode/arkode.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/cvode/cvode.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/cvode/cvode.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/cvode/cvode.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/cvode/cvode.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/euler/euler.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/euler/euler.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/euler/euler.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/euler/euler.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/ida/ida.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/ida/ida.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/ida/ida.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/ida/ida.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/imex-bdf2/imex-bdf2.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/imex-bdf2/imex-bdf2.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/imex-bdf2/imex-bdf2.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/imex-bdf2/imex-bdf2.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/karniadakis/karniadakis.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/karniadakis/karniadakis.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/karniadakis/karniadakis.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/karniadakis/karniadakis.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/petsc/petsc.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/petsc/petsc.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/petsc/petsc.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/petsc/petsc.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/power/power.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/power/power.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/power/power.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/power/power.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/pvode/pvode.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/pvode/pvode.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/pvode/pvode.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/pvode/pvode.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rk3-ssp/rk3-ssp.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rk3-ssp/rk3-ssp.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rk3-ssp/rk3-ssp.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rk3-ssp/rk3-ssp.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rk4/rk4.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rk4/rk4.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rk4/rk4.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rk4/rk4.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/impls/cashkarp/cashkarp.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/impls/cashkarp/cashkarp.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/impls/cashkarp/cashkarp.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/impls/cashkarp/cashkarp.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/impls/rk4simple/rk4simple.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/impls/rk4simple/rk4simple.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/impls/rk4simple/rk4simple.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/impls/rk4simple/rk4simple.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/impls/rkf34/rkf34.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/impls/rkf34/rkf34.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/impls/rkf34/rkf34.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/impls/rkf34/rkf34.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/impls/rkf45/rkf45.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/impls/rkf45/rkf45.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/impls/rkf45/rkf45.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/impls/rkf45/rkf45.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/rkgeneric.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/rkgeneric.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/rkgeneric.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/rkgeneric.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/rkscheme.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/rkscheme.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/rkschemefactory.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/rkschemefactory.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/rkschemefactory.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/rkschemefactory.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/slepc/slepc.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/slepc/slepc.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/slepc/slepc.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/slepc/slepc.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/snes/snes.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/snes/snes.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/snes/snes.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/snes/snes.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/split-rk/split-rk.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/split-rk/split-rk.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/split-rk/split-rk.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/split-rk/split-rk.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/solver.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/solver.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/solverfactory.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/solverfactory.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/bout_types.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/bout_types.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/boutcomm.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/sr/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/generic_factory.hxx:1: warning: the name 'Base' supplied as the argument in the \file statement is not an input file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.cxx:347: warning: no uniquely matching class member found for const vector< int > NcFormat::getSize(const string &var) Possible candidates: 'virtual const std::vector< int > DataFormat::getSize(const char *var)=0' at line 70 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual const std::vector< int > DataFormat::getSize(const std::string &var)=0' at line 71 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'const std::vector< int > EmptyFormat::getSize(const char *var)' at line 46 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'const std::vector< int > EmptyFormat::getSize(const std::string &var)' at line 47 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'const std::vector< int > H5Format::getSize(const char *var) override' at line 76 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'const std::vector< int > H5Format::getSize(const std::string &var) override' at line 77 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'const std::vector< int > NcFormat::getSize(const char *var) override' at line 77 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'const std::vector< int > NcFormat::getSize(const std::string &var) override' at line 78 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'const std::vector< int > Ncxx4::getSize(const char *var) override' at line 78 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'const std::vector< int > Ncxx4::getSize(const std::string &var) override' at line 79 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'const vector< int > PncFormat::getSize(const char *var) override' at line 75 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'const vector< int > PncFormat::getSize(const std::string &var) override' at line 76 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.cxx:659: warning: no uniquely matching class member found for bool NcFormat::read(int *var, const string &name, int lx, int ly, int lz) Possible candidates: 'bool Datafile::read()' at line 94 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/datafile.hxx 'virtual bool DataFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 89 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 90 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::read(char *var, const char *name, int n=1)=0' at line 91 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::read(char *var, const std::string &name, int n=1)=0' at line 92 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 93 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 94 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'Options bout::experimental::OptionsNetCDF::read()' at line 60 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/options_netcdf.hxx 'void OptionsReader::read(Options *options, const char *file,...)' at line 65 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/optionsreader.hxx 'bool EmptyFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 52 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 54 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 56 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 58 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool H5Format::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 95 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 96 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(char *var, const char *name, int n=1) override' at line 97 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(char *var, const std::string &name, int n=1) override' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(void *var, hid_t hdf5_type, const char *name, int lx=1, int ly=0, int lz=0)' at line 161 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool NcFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read(char *var, const char *name, int n=1) override' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read(char *var, const std::string &name, int n=1) override' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool Ncxx4::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read(char *var, const char *name, int n=1) override' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read(char *var, const std::string &name, int n=1) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 105 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool PncFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 84 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 85 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 86 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 87 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'virtual void OptionParser::read(Options *options, const std::string &filename)=0' at line 56 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/options/optionparser.hxx 'void OptionINI::read(Options *options, const std::string &filename) override' at line 51 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/options/options_ini.hxx /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.cxx:715: warning: no uniquely matching class member found for bool NcFormat::read(char *var, const string &name, int n) Possible candidates: 'bool Datafile::read()' at line 94 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/datafile.hxx 'virtual bool DataFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 89 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 90 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::read(char *var, const char *name, int n=1)=0' at line 91 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::read(char *var, const std::string &name, int n=1)=0' at line 92 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 93 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 94 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'Options bout::experimental::OptionsNetCDF::read()' at line 60 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/options_netcdf.hxx 'void OptionsReader::read(Options *options, const char *file,...)' at line 65 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/optionsreader.hxx 'bool EmptyFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 52 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 54 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 56 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 58 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool H5Format::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 95 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 96 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(char *var, const char *name, int n=1) override' at line 97 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(char *var, const std::string &name, int n=1) override' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(void *var, hid_t hdf5_type, const char *name, int lx=1, int ly=0, int lz=0)' at line 161 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool NcFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read(char *var, const char *name, int n=1) override' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read(char *var, const std::string &name, int n=1) override' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool Ncxx4::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read(char *var, const char *name, int n=1) override' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read(char *var, const std::string &name, int n=1) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 105 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool PncFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 84 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 85 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 86 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 87 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'virtual void OptionParser::read(Options *options, const std::string &filename)=0' at line 56 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/options/optionparser.hxx 'void OptionINI::read(Options *options, const std::string &filename) override' at line 51 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/options/options_ini.hxx /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.cxx:756: warning: no uniquely matching class member found for bool NcFormat::read(double *var, const string &name, int lx, int ly, int lz) Possible candidates: 'bool Datafile::read()' at line 94 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/datafile.hxx 'virtual bool DataFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 89 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 90 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::read(char *var, const char *name, int n=1)=0' at line 91 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::read(char *var, const std::string &name, int n=1)=0' at line 92 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 93 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 94 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'Options bout::experimental::OptionsNetCDF::read()' at line 60 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/options_netcdf.hxx 'void OptionsReader::read(Options *options, const char *file,...)' at line 65 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/optionsreader.hxx 'bool EmptyFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 52 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 54 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 56 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 58 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool H5Format::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 95 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 96 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(char *var, const char *name, int n=1) override' at line 97 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(char *var, const std::string &name, int n=1) override' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(void *var, hid_t hdf5_type, const char *name, int lx=1, int ly=0, int lz=0)' at line 161 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool NcFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read(char *var, const char *name, int n=1) override' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read(char *var, const std::string &name, int n=1) override' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool Ncxx4::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read(char *var, const char *name, int n=1) override' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read(char *var, const std::string &name, int n=1) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 105 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool PncFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 84 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 85 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 86 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 87 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'virtual void OptionParser::read(Options *options, const std::string &filename)=0' at line 56 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/options/optionparser.hxx 'void OptionINI::read(Options *options, const std::string &filename) override' at line 51 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/options/options_ini.hxx /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.cxx:834: warning: no uniquely matching class member found for bool NcFormat::write(int *var, const string &name, int lx, int ly, int lz) Possible candidates: 'bool Datafile::write()' at line 95 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/datafile.hxx 'bool Datafile::write(const char *filename,...) const' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/datafile.hxx 'virtual bool DataFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 97 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::write(char *var, const char *name, int n=1)=0' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::write(char *var, const std::string &name, int n=1)=0' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'void bout::experimental::OptionsNetCDF::write(const Options &options)' at line 63 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/options_netcdf.hxx 'void OptionsReader::write(Options *options, const char *file,...)' at line 72 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/optionsreader.hxx 'virtual void Output::write(const char *string,...)' at line 92 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/output.hxx 'void DummyOutput::write(const char *str,...) override' at line 133 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/output.hxx 'void ConditionalOutput::write(const char *str,...) override' at line 162 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/output.hxx 'bool EmptyFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 61 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 63 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 65 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 67 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool H5Format::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(char *var, const char *name, int n=1) override' at line 105 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(char *var, const std::string &name, int n=1) override' at line 106 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 107 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(void *var, hid_t mem_hdf5_type, const char *name, int lx=0, int ly=0, int lz=0)' at line 162 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool NcFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 107 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write(char *var, const char *name, int n=1) override' at line 109 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write(char *var, const std::string &name, int n=1) override' at line 110 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 111 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 112 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool Ncxx4::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 109 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write(char *var, const char *name, int n=1) override' at line 110 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write(char *var, const std::string &name, int n=1) override' at line 111 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 112 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 113 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool PncFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 89 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 90 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 91 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 92 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'virtual void OptionParser::write(Options *options, const std::string &filename)=0' at line 59 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/options/optionparser.hxx 'void OptionINI::write(Options *options, const std::string &filename) override' at line 54 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/options/options_ini.hxx /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.cxx:879: warning: no uniquely matching class member found for bool NcFormat::write(char *var, const string &name, int n) Possible candidates: 'bool Datafile::write()' at line 95 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/datafile.hxx 'bool Datafile::write(const char *filename,...) const' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/datafile.hxx 'virtual bool DataFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 97 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::write(char *var, const char *name, int n=1)=0' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::write(char *var, const std::string &name, int n=1)=0' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'void bout::experimental::OptionsNetCDF::write(const Options &options)' at line 63 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/options_netcdf.hxx 'void OptionsReader::write(Options *options, const char *file,...)' at line 72 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/optionsreader.hxx 'virtual void Output::write(const char *string,...)' at line 92 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/output.hxx 'void DummyOutput::write(const char *str,...) override' at line 133 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/output.hxx 'void ConditionalOutput::write(const char *str,...) override' at line 162 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/output.hxx 'bool EmptyFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 61 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 63 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 65 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 67 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool H5Format::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(char *var, const char *name, int n=1) override' at line 105 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(char *var, const std::string &name, int n=1) override' at line 106 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 107 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(void *var, hid_t mem_hdf5_type, const char *name, int lx=0, int ly=0, int lz=0)' at line 162 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool NcFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 107 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write(char *var, const char *name, int n=1) override' at line 109 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write(char *var, const std::string &name, int n=1) override' at line 110 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 111 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 112 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool Ncxx4::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 109 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write(char *var, const char *name, int n=1) override' at line 110 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write(char *var, const std::string &name, int n=1) override' at line 111 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 112 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 113 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool PncFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 89 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 90 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 91 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 92 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'virtual void OptionParser::write(Options *options, const std::string &filename)=0' at line 59 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/options/optionparser.hxx 'void OptionINI::write(Options *options, const std::string &filename) override' at line 54 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/options/options_ini.hxx /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.cxx:941: warning: no uniquely matching class member found for bool NcFormat::write(double *var, const string &name, int lx, int ly, int lz) Possible candidates: 'bool Datafile::write()' at line 95 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/datafile.hxx 'bool Datafile::write(const char *filename,...) const' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/datafile.hxx 'virtual bool DataFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 97 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::write(char *var, const char *name, int n=1)=0' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::write(char *var, const std::string &name, int n=1)=0' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'void bout::experimental::OptionsNetCDF::write(const Options &options)' at line 63 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/options_netcdf.hxx 'void OptionsReader::write(Options *options, const char *file,...)' at line 72 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/optionsreader.hxx 'virtual void Output::write(const char *string,...)' at line 92 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/output.hxx 'void DummyOutput::write(const char *str,...) override' at line 133 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/output.hxx 'void ConditionalOutput::write(const char *str,...) override' at line 162 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/output.hxx 'bool EmptyFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 61 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 63 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 65 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 67 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool H5Format::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(char *var, const char *name, int n=1) override' at line 105 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(char *var, const std::string &name, int n=1) override' at line 106 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 107 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(void *var, hid_t mem_hdf5_type, const char *name, int lx=0, int ly=0, int lz=0)' at line 162 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool NcFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 107 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write(char *var, const char *name, int n=1) override' at line 109 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write(char *var, const std::string &name, int n=1) override' at line 110 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 111 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 112 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool Ncxx4::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 109 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write(char *var, const char *name, int n=1) override' at line 110 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write(char *var, const std::string &name, int n=1) override' at line 111 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 112 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 113 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool PncFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 89 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 90 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 91 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 92 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'virtual void OptionParser::write(Options *options, const std::string &filename)=0' at line 59 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/options/optionparser.hxx 'void OptionINI::write(Options *options, const std::string &filename) override' at line 54 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/options/options_ini.hxx /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.cxx:1043: warning: no uniquely matching class member found for bool NcFormat::read_rec(int *var, const string &name, int lx, int ly, int lz) Possible candidates: 'virtual bool DataFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 107 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::read_rec(char *var, const char *name, int n=1)=0' at line 109 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::read_rec(char *var, const std::string &name, int n=1)=0' at line 110 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 111 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 112 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'bool EmptyFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 70 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 72 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 74 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 76 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool H5Format::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 113 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 114 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(char *var, const char *name, int n=1) override' at line 115 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(char *var, const std::string &name, int n=1) override' at line 116 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 117 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(void *var, hid_t hdf5_type, const char *name, int lx=1, int ly=0, int lz=0)' at line 163 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool NcFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 117 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read_rec(char *var, const char *name, int n=1) override' at line 119 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read_rec(char *var, const std::string &name, int n=1) override' at line 120 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 121 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 122 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool Ncxx4::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 119 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read_rec(char *var, const char *name, int n=1) override' at line 120 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read_rec(char *var, const std::string &name, int n=1) override' at line 121 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 122 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 123 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool PncFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 96 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 97 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.cxx:1089: warning: no uniquely matching class member found for bool NcFormat::read_rec(char *var, const string &name, int n) Possible candidates: 'virtual bool DataFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 107 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::read_rec(char *var, const char *name, int n=1)=0' at line 109 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::read_rec(char *var, const std::string &name, int n=1)=0' at line 110 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 111 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 112 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'bool EmptyFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 70 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 72 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 74 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 76 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool H5Format::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 113 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 114 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(char *var, const char *name, int n=1) override' at line 115 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(char *var, const std::string &name, int n=1) override' at line 116 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 117 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(void *var, hid_t hdf5_type, const char *name, int lx=1, int ly=0, int lz=0)' at line 163 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool NcFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 117 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read_rec(char *var, const char *name, int n=1) override' at line 119 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read_rec(char *var, const std::string &name, int n=1) override' at line 120 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 121 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 122 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool Ncxx4::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 119 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read_rec(char *var, const char *name, int n=1) override' at line 120 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read_rec(char *var, const std::string &name, int n=1) override' at line 121 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 122 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 123 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool PncFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 96 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 97 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.cxx:1130: warning: no uniquely matching class member found for bool NcFormat::read_rec(double *var, const string &name, int lx, int ly, int lz) Possible candidates: 'virtual bool DataFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 107 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::read_rec(char *var, const char *name, int n=1)=0' at line 109 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::read_rec(char *var, const std::string &name, int n=1)=0' at line 110 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 111 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 112 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'bool EmptyFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 70 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 72 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 74 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 76 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool H5Format::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 113 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 114 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(char *var, const char *name, int n=1) override' at line 115 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(char *var, const std::string &name, int n=1) override' at line 116 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 117 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(void *var, hid_t hdf5_type, const char *name, int lx=1, int ly=0, int lz=0)' at line 163 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool NcFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 117 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read_rec(char *var, const char *name, int n=1) override' at line 119 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read_rec(char *var, const std::string &name, int n=1) override' at line 120 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 121 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 122 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool Ncxx4::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 119 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read_rec(char *var, const char *name, int n=1) override' at line 120 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read_rec(char *var, const std::string &name, int n=1) override' at line 121 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 122 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 123 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool PncFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 96 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 97 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.cxx:1212: warning: no uniquely matching class member found for bool NcFormat::write_rec(int *var, const string &name, int lx, int ly, int lz) Possible candidates: 'virtual bool DataFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 115 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 116 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::write_rec(char *var, const char *name, int n=1)=0' at line 117 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::write_rec(char *var, const std::string &name, int n=1)=0' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 119 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 120 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'bool EmptyFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 79 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 81 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 83 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 85 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool H5Format::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 121 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 122 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(char *var, const char *name, int n=1) override' at line 123 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(char *var, const std::string &name, int n=1) override' at line 124 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 125 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 126 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(void *var, hid_t mem_hdf5_type, const char *name, int lx=0, int ly=0, int lz=0)' at line 164 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool NcFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 125 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 126 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write_rec(char *var, const char *name, int n=1) override' at line 127 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write_rec(char *var, const std::string &name, int n=1) override' at line 128 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 129 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 130 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool Ncxx4::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 126 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 127 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write_rec(char *var, const char *name, int n=1) override' at line 128 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write_rec(char *var, const std::string &name, int n=1) override' at line 129 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 130 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 131 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool PncFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.cxx:1260: warning: no uniquely matching class member found for bool NcFormat::write_rec(char *var, const string &name, int n) Possible candidates: 'virtual bool DataFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 115 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 116 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::write_rec(char *var, const char *name, int n=1)=0' at line 117 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::write_rec(char *var, const std::string &name, int n=1)=0' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 119 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 120 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'bool EmptyFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 79 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 81 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 83 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 85 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool H5Format::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 121 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 122 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(char *var, const char *name, int n=1) override' at line 123 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(char *var, const std::string &name, int n=1) override' at line 124 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 125 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 126 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(void *var, hid_t mem_hdf5_type, const char *name, int lx=0, int ly=0, int lz=0)' at line 164 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool NcFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 125 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 126 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write_rec(char *var, const char *name, int n=1) override' at line 127 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write_rec(char *var, const std::string &name, int n=1) override' at line 128 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 129 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 130 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool Ncxx4::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 126 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 127 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write_rec(char *var, const char *name, int n=1) override' at line 128 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write_rec(char *var, const std::string &name, int n=1) override' at line 129 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 130 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 131 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool PncFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.cxx:1335: warning: no uniquely matching class member found for bool NcFormat::write_rec(double *var, const string &name, int lx, int ly, int lz) Possible candidates: 'virtual bool DataFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 115 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 116 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::write_rec(char *var, const char *name, int n=1)=0' at line 117 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::write_rec(char *var, const std::string &name, int n=1)=0' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 119 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 120 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'bool EmptyFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 79 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 81 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 83 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 85 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool H5Format::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 121 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 122 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(char *var, const char *name, int n=1) override' at line 123 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(char *var, const std::string &name, int n=1) override' at line 124 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 125 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 126 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(void *var, hid_t mem_hdf5_type, const char *name, int lx=0, int ly=0, int lz=0)' at line 164 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool NcFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 125 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 126 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write_rec(char *var, const char *name, int n=1) override' at line 127 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write_rec(char *var, const std::string &name, int n=1) override' at line 128 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 129 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 130 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool Ncxx4::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 126 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 127 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write_rec(char *var, const char *name, int n=1) override' at line 128 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write_rec(char *var, const std::string &name, int n=1) override' at line 129 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 130 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 131 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool PncFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.cxx:295: warning: no uniquely matching class member found for bool PncFormat::read(int *var, const string &name, int lx, int ly, int lz) Possible candidates: 'bool Datafile::read()' at line 94 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/datafile.hxx 'virtual bool DataFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 89 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 90 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::read(char *var, const char *name, int n=1)=0' at line 91 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::read(char *var, const std::string &name, int n=1)=0' at line 92 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 93 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 94 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'Options bout::experimental::OptionsNetCDF::read()' at line 60 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/options_netcdf.hxx 'void OptionsReader::read(Options *options, const char *file,...)' at line 65 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/optionsreader.hxx 'bool EmptyFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 52 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 54 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 56 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 58 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool H5Format::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 95 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 96 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(char *var, const char *name, int n=1) override' at line 97 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(char *var, const std::string &name, int n=1) override' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(void *var, hid_t hdf5_type, const char *name, int lx=1, int ly=0, int lz=0)' at line 161 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool NcFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read(char *var, const char *name, int n=1) override' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read(char *var, const std::string &name, int n=1) override' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool Ncxx4::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read(char *var, const char *name, int n=1) override' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read(char *var, const std::string &name, int n=1) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 105 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool PncFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 84 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 85 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 86 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 87 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'virtual void OptionParser::read(Options *options, const std::string &filename)=0' at line 56 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/options/optionparser.hxx 'void OptionINI::read(Options *options, const std::string &filename) override' at line 51 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/options/options_ini.hxx /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.cxx:354: warning: no uniquely matching class member found for bool PncFormat::read(double *var, const string &name, int lx, int ly, int lz) Possible candidates: 'bool Datafile::read()' at line 94 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/datafile.hxx 'virtual bool DataFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 89 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 90 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::read(char *var, const char *name, int n=1)=0' at line 91 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::read(char *var, const std::string &name, int n=1)=0' at line 92 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 93 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 94 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'Options bout::experimental::OptionsNetCDF::read()' at line 60 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/options_netcdf.hxx 'void OptionsReader::read(Options *options, const char *file,...)' at line 65 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/optionsreader.hxx 'bool EmptyFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 52 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 54 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 56 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 58 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool H5Format::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 95 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 96 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(char *var, const char *name, int n=1) override' at line 97 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(char *var, const std::string &name, int n=1) override' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(void *var, hid_t hdf5_type, const char *name, int lx=1, int ly=0, int lz=0)' at line 161 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool NcFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read(char *var, const char *name, int n=1) override' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read(char *var, const std::string &name, int n=1) override' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool Ncxx4::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read(char *var, const char *name, int n=1) override' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read(char *var, const std::string &name, int n=1) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 105 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool PncFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 84 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 85 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 86 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 87 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'virtual void OptionParser::read(Options *options, const std::string &filename)=0' at line 56 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/options/optionparser.hxx 'void OptionINI::read(Options *options, const std::string &filename) override' at line 51 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/options/options_ini.hxx /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.cxx:402: warning: no uniquely matching class member found for bool PncFormat::write(int *var, const string &name, int lx, int ly, int lz) Possible candidates: 'bool Datafile::write()' at line 95 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/datafile.hxx 'bool Datafile::write(const char *filename,...) const' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/datafile.hxx 'virtual bool DataFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 97 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::write(char *var, const char *name, int n=1)=0' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::write(char *var, const std::string &name, int n=1)=0' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'void bout::experimental::OptionsNetCDF::write(const Options &options)' at line 63 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/options_netcdf.hxx 'void OptionsReader::write(Options *options, const char *file,...)' at line 72 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/optionsreader.hxx 'virtual void Output::write(const char *string,...)' at line 92 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/output.hxx 'void DummyOutput::write(const char *str,...) override' at line 133 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/output.hxx 'void ConditionalOutput::write(const char *str,...) override' at line 162 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/output.hxx 'bool EmptyFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 61 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 63 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 65 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 67 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool H5Format::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(char *var, const char *name, int n=1) override' at line 105 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(char *var, const std::string &name, int n=1) override' at line 106 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 107 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(void *var, hid_t mem_hdf5_type, const char *name, int lx=0, int ly=0, int lz=0)' at line 162 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool NcFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 107 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write(char *var, const char *name, int n=1) override' at line 109 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write(char *var, const std::string &name, int n=1) override' at line 110 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 111 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 112 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool Ncxx4::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 109 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write(char *var, const char *name, int n=1) override' at line 110 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write(char *var, const std::string &name, int n=1) override' at line 111 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 112 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 113 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool PncFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 89 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 90 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 91 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 92 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'virtual void OptionParser::write(Options *options, const std::string &filename)=0' at line 59 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/options/optionparser.hxx 'void OptionINI::write(Options *options, const std::string &filename) override' at line 54 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/options/options_ini.hxx /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.cxx:488: warning: no uniquely matching class member found for bool PncFormat::write(double *var, const string &name, int lx, int ly, int lz) Possible candidates: 'bool Datafile::write()' at line 95 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/datafile.hxx 'bool Datafile::write(const char *filename,...) const' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/datafile.hxx 'virtual bool DataFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 97 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::write(char *var, const char *name, int n=1)=0' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::write(char *var, const std::string &name, int n=1)=0' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'void bout::experimental::OptionsNetCDF::write(const Options &options)' at line 63 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/options_netcdf.hxx 'void OptionsReader::write(Options *options, const char *file,...)' at line 72 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/optionsreader.hxx 'virtual void Output::write(const char *string,...)' at line 92 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/output.hxx 'void DummyOutput::write(const char *str,...) override' at line 133 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/output.hxx 'void ConditionalOutput::write(const char *str,...) override' at line 162 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/output.hxx 'bool EmptyFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 61 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 63 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 65 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 67 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool H5Format::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(char *var, const char *name, int n=1) override' at line 105 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(char *var, const std::string &name, int n=1) override' at line 106 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 107 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(void *var, hid_t mem_hdf5_type, const char *name, int lx=0, int ly=0, int lz=0)' at line 162 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool NcFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 107 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write(char *var, const char *name, int n=1) override' at line 109 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write(char *var, const std::string &name, int n=1) override' at line 110 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 111 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 112 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool Ncxx4::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 109 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write(char *var, const char *name, int n=1) override' at line 110 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write(char *var, const std::string &name, int n=1) override' at line 111 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 112 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 113 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool PncFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 89 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 90 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 91 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 92 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'virtual void OptionParser::write(Options *options, const std::string &filename)=0' at line 59 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/options/optionparser.hxx 'void OptionINI::write(Options *options, const std::string &filename) override' at line 54 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/options/options_ini.hxx /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.cxx:524: warning: no uniquely matching class member found for bool PncFormat::read_rec(int *var, const string &name, int lx, int ly, int lz) Possible candidates: 'virtual bool DataFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 107 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::read_rec(char *var, const char *name, int n=1)=0' at line 109 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::read_rec(char *var, const std::string &name, int n=1)=0' at line 110 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 111 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 112 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'bool EmptyFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 70 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 72 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 74 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 76 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool H5Format::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 113 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 114 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(char *var, const char *name, int n=1) override' at line 115 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(char *var, const std::string &name, int n=1) override' at line 116 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 117 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(void *var, hid_t hdf5_type, const char *name, int lx=1, int ly=0, int lz=0)' at line 163 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool NcFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 117 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read_rec(char *var, const char *name, int n=1) override' at line 119 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read_rec(char *var, const std::string &name, int n=1) override' at line 120 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 121 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 122 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool Ncxx4::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 119 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read_rec(char *var, const char *name, int n=1) override' at line 120 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read_rec(char *var, const std::string &name, int n=1) override' at line 121 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 122 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 123 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool PncFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 96 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 97 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.cxx:556: warning: no uniquely matching class member found for bool PncFormat::read_rec(double *var, const string &name, int lx, int ly, int lz) Possible candidates: 'virtual bool DataFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 107 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::read_rec(char *var, const char *name, int n=1)=0' at line 109 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::read_rec(char *var, const std::string &name, int n=1)=0' at line 110 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 111 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 112 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'bool EmptyFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 70 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 72 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 74 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 76 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool H5Format::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 113 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 114 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(char *var, const char *name, int n=1) override' at line 115 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(char *var, const std::string &name, int n=1) override' at line 116 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 117 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(void *var, hid_t hdf5_type, const char *name, int lx=1, int ly=0, int lz=0)' at line 163 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool NcFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 117 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read_rec(char *var, const char *name, int n=1) override' at line 119 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read_rec(char *var, const std::string &name, int n=1) override' at line 120 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 121 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 122 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool Ncxx4::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 119 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read_rec(char *var, const char *name, int n=1) override' at line 120 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read_rec(char *var, const std::string &name, int n=1) override' at line 121 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 122 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 123 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool PncFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 96 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 97 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.cxx:605: warning: no uniquely matching class member found for bool PncFormat::write_rec(int *var, const string &name, int lx, int ly, int lz) Possible candidates: 'virtual bool DataFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 115 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 116 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::write_rec(char *var, const char *name, int n=1)=0' at line 117 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::write_rec(char *var, const std::string &name, int n=1)=0' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 119 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 120 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'bool EmptyFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 79 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 81 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 83 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 85 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool H5Format::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 121 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 122 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(char *var, const char *name, int n=1) override' at line 123 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(char *var, const std::string &name, int n=1) override' at line 124 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 125 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 126 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(void *var, hid_t mem_hdf5_type, const char *name, int lx=0, int ly=0, int lz=0)' at line 164 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool NcFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 125 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 126 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write_rec(char *var, const char *name, int n=1) override' at line 127 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write_rec(char *var, const std::string &name, int n=1) override' at line 128 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 129 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 130 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool Ncxx4::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 126 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 127 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write_rec(char *var, const char *name, int n=1) override' at line 128 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write_rec(char *var, const std::string &name, int n=1) override' at line 129 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 130 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 131 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool PncFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx c/sys/boutcomm.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/boutexception.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/boutexception.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/derivs.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/derivs.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/expressionparser.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/expressionparser.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/msg_stack.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/msg_stack.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/options.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/options.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/options/optionparser.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/options/optionparser.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/options/options_ini.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/options/options_ini.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/options/options_ini.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/options/options_ini.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/options/options_netcdf.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/options/options_netcdf.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/optionsreader.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/optionsreader.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/output.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/output.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/petsclib.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/petsclib.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/range.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/range.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/slepclib.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/slepclib.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/timer.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/timer.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/type_name.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/type_name.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/utils.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/utils.cxx... Building macro definition list... Building group list... Building directory list... Building namespace list... Building file list... Building class list... Building concept list... Computing nesting relations for classes... Associating documentation with classes... Associating documentation with concepts... Building example list... Searching for enumerations... Searching for documented typedefs... Searching for members imported via using declarations... Searching for included using directives... Searching for documented variables... Building interface member list... Building member list... Searching for friends... Searching for documented defines... Computing class inheritance relations... Computing class usage relations... Flushing cached template relations that have become invalid... Computing class relations... Add enum values to enums... Searching for member function documentation... Creating members for template instances... Building page list... Search for main page... Computing page relations... Determining the scope of groups... Sortin/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.cxx:681: warning: no uniquely matching class member found for bool PncFormat::write_rec(double *var, const string &name, int lx, int ly, int lz) Possible candidates: 'virtual bool DataFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 115 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 116 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::write_rec(char *var, const char *name, int n=1)=0' at line 117 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::write_rec(char *var, const std::string &name, int n=1)=0' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 119 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'virtual bool DataFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 120 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx 'bool EmptyFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 79 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 81 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 83 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 85 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx 'bool H5Format::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 121 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 122 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(char *var, const char *name, int n=1) override' at line 123 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(char *var, const std::string &name, int n=1) override' at line 124 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 125 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 126 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(void *var, hid_t mem_hdf5_type, const char *name, int lx=0, int ly=0, int lz=0)' at line 164 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx 'bool NcFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 125 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 126 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write_rec(char *var, const char *name, int n=1) override' at line 127 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write_rec(char *var, const std::string &name, int n=1) override' at line 128 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 129 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 130 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool Ncxx4::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 126 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 127 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write_rec(char *var, const char *name, int n=1) override' at line 128 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write_rec(char *var, const std::string &name, int n=1) override' at line 129 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 130 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 131 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx 'bool PncFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/boundary_factory.cxx:80: warning: no uniquely matching class member found for BoundaryOpBase * BoundaryFactory::create(const string &name, BoundaryRegionBase *region) Possible candidates: 'BoundaryOpBase * BoundaryFactory::create(const std::string &name, BoundaryRegionBase *region)' at line 70 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/boundary_factory.hxx 'BoundaryOpBase * BoundaryFactory::create(const char *name, BoundaryRegionBase *region)' at line 71 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/boundary_factory.hxx 'template < Args > BaseType * Factory< BaseType, TypeCreator >::create(const std::string &name, Args &&... args)' at line 57 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/generic_factory.hxx 'static LaplaceXZ * LaplaceXZ::create(Mesh *m=nullptr, Options *opt=nullptr, const CELL_LOC loc=CELL_CENTRE)' at line 51 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/invert/laplacexz.hxx 'static Mesh * Mesh::create(GridDataSource *source, Options *opt=nullptr)' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/mesh.hxx 'static Mesh * Mesh::create(Options *opt=nullptr)' at line 110 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/mesh.hxx 'static Solver * Solver::create(Options *opts=nullptr)' at line 308 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/solver.hxx 'static Solver * Solver::create(const SolverType &type, Options *opts=nullptr)' at line 311 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/solver.hxx 'Interpolation * InterpolationFactory::create(Mesh *mesh)' at line 49 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/interpolation_factory.hxx 'Interpolation * InterpolationFactory::create(Options *options=nullptr, Mesh *mesh=nullptr)' at line 50 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/interpolation_factory.hxx 'Interpolation * InterpolationFactory::create(const std::string &name, Options *options=nullptr, Mesh *mesh=nullptr)' at line 59 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/interpolation_factory.hxx 'static Laplacian * Laplacian::create(Options *opt=nullptr, const CELL_LOC loc=CELL_CENTRE, Mesh *mesh_in=nullptr)' at line 212 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/invert_laplace.hxx /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/boundary_factory.cxx:210: warning: no matching class member found for BoundaryOpBase * BoundaryFactory::createFromOptions(const string &varname, BoundaryRegionBase *region) Possible candidates: 'BoundaryOpBase * BoundaryFactory::createFromOptions(const std::string &varname, BoundaryRegionBase *region)' at line 74 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/boundary_factory.hxx 'BoundaryOpBase * BoundaryFactory::createFromOptions(const char *varname, BoundaryRegionBase *region)' at line 75 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/boundary_factory.hxx /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/boundary_factory.cxx:313: warning: no uniquely matching class member found for void BoundaryFactory::add(BoundaryOp *bop, const string &name) Possible candidates: 'void BoundaryFactory::add(BoundaryOp *bop, const std::string &name)' at line 81 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/boundary_factory.hxx 'void BoundaryFactory::add(BoundaryOp *bop, const char *name)' at line 88 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/boundary_factory.hxx 'void BoundaryFactory::add(BoundaryOpPar *bop, const std::string &name)' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/boundary_factory.hxx 'void BoundaryFactory::add(BoundaryOpPar *bop, const char *name)' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/boundary_factory.hxx 'void FieldGroup::add(const FieldGroup &other)' at line 70 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/fieldgroup.hxx 'void FieldGroup::add(FieldData &f)' at line 86 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/fieldgroup.hxx 'void FieldGroup::add(Field3D &f)' at line 95 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/fieldgroup.hxx 'void FieldGroup::add(Vector2D &v)' at line 105 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/fieldgroup.hxx 'void FieldGroup::add(Vector3D &v)' at line 116 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/fieldgroup.hxx 'template < Ts > void FieldGroup::add(FieldData &t, Ts &... ts)' at line 131 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/fieldgroup.hxx 'template < Ts > void FieldGroup::add(Field3D &t, Ts &... ts)' at line 137 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/fieldgroup.hxx 'template < Ts > void FieldGroup::add(Vector3D &t, Ts &... ts)' at line 143 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/fieldgroup.hxx 'template < Ts > void FieldGroup::add(Vector2D &t, Ts &... ts)' at line 149 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/fieldgroup.hxx 'virtual bool Factory< BaseType, TypeCreator >::add(const std::string &name, TypeCreator creator)' at line 42 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/generic_factory.hxx 'virtual void Solver::add(Field2D &v, const std::string &name, const std::string &description="")' at line 236 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/solver.hxx 'virtual void Solver::add(Field3D &v, const std::string &name, const std::string &description="")' at line 237 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/solver.hxx 'virtual void Solver::add(Vector2D &v, const std::string &name, const std::string &description="")' at line 238 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/solver.hxx 'virtual void Solver::add(Vector3D &v, const std::string &name, const std::string &description="")' at line 239 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/solver.hxx 'void Datafile::add(int &i, const char *name, bool save_repeat=false, const std::string &description="")' at line 73 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/datafile.hxx 'void Datafile::add(std::vector< int > &ivec, const char *name, bool save_repeat=false, const std::string &description="")' at line 75 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/datafile.hxx 'void Datafile::add(std::string &s, const char *name, bool save_repeat=false, const std::string &description="")' at line 77 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/datafile.hxx 'void Datafile::add(BoutReal &r, const char *name, bool save_repeat=false, const std::string &description="")' at line 79 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/datafile.hxx 'void Datafile::add(bool &b, const char *name, bool save_repeat=false, const std::string &description="")' at line 81 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/datafile.hxx 'void Datafile::add(Field2D &f, const char *name, bool save_repeat=false, const std::string &description="")' at line 83 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/datafile.hxx 'void Datafile::add(Field3D &f, const char *name, bool save_repeat=false, const std::string &description="")' at line 85 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/datafile.hxx 'void Datafile::add(FieldPerp &f, const char *name, bool save_repeat=false, const std::string &description="")' at line 87 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/datafile.hxx 'void Datafile::add(Vector2D &f, const char *name, bool save_repeat=false, const std::string &description="")' at line 89 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/datafile.hxx 'void Datafile::add(Vector3D &f, const char *name, bool save_repeat=false, const std::string &description="")' at line 91 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/datafile.hxx 'void InterpolationFactory::add(CreateInterpCallback interp, const std::string &name)' at line 63 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/interpolation_factory.hxx 'void multioutbuf< char_type, traits >::add(std::basic_ostream< char_type, traits > &str)' at line 19 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/multiostream.hxx 'void multiostream< char_type, traits >::add(std::basic_ostream< char_type, traits > &str)' at line 84 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/multiostream.hxx 'void Output::add(std::basic_ostream< char, _Tr > &str)' at line 105 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/output.hxx 'void SlepcSolver::add(Field2D &v, const std::string &name, const std::string &description="") override' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/slepc/slepc.hxx 'void SlepcSolver::add(Field3D &v, const std::string &name, const std::string &description="") override' at line 106 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/slepc/slepc.hxx 'void SlepcSolver::add(Vector2D &v, const std::string &name, const std::string &description="") override' at line 113 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/slepc/slepc.hxx 'void SlepcSolver::add(Vector3D &v, const std::string &name, const std::string &description="") override' at line 120 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/slepc/slepc.hxx /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/boundary_factory.cxx:326: warning: no uniquely matching class member found for void BoundaryFactory::add(BoundaryOpPar *bop, const string &name) Possible candidates: 'void BoundaryFactory::add(BoundaryOp *bop, const std::string &name)' at line 81 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/boundary_factory.hxx 'void BoundaryFactory::add(BoundaryOp *bop, const char *name)' at line 88 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/boundary_factory.hxx 'void BoundaryFactory::add(BoundaryOpPar *bop, const std::string &name)' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/boundary_factory.hxx 'void BoundaryFactory::add(BoundaryOpPar *bop, const char *name)' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/boundary_factory.hxx 'void FieldGroup::add(const FieldGroup &other)' at line 70 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/fieldgroup.hxx 'void FieldGroup::add(FieldData &f)' at line 86 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/fieldgroup.hxx 'void FieldGroup::add(Field3D &f)' at line 95 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/fieldgroup.hxx 'void FieldGroup::add(Vector2D &v)' at line 105 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/fieldgroup.hxx 'void FieldGroup::add(Vector3D &v)' at line 116 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/fieldgroup.hxx 'template < Ts > void FieldGroup::add(FieldData &t, Ts &... ts)' at line 131 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/fieldgroup.hxx 'template < Ts > void FieldGroup::add(Field3D &t, Ts &... ts)' at line 137 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/fieldgroup.hxx 'template < Ts > void FieldGroup::add(Vector3D &t, Ts &... ts)' at line 143 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/fieldgroup.hxx 'template < Ts > void FieldGroup::add(Vector2D &t, Ts &... ts)' at line 149 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/fieldgroup.hxx 'virtual bool Factory< BaseType, TypeCreator >::add(const std::string &name, TypeCreator creator)' at line 42 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/generic_factory.hxx 'virtual void Solver::add(Field2D &v, const std::string &name, const std::string &description="")' at line 236 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/solver.hxx 'virtual void Solver::add(Field3D &v, const std::string &name, const std::string &description="")' at line 237 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/solver.hxx 'virtual void Solver::add(Vector2D &v, const std::string &name, const std::string &description="")' at line 238 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/solver.hxx 'virtual void Solver::add(Vector3D &v, const std::string &name, const std::string &description="")' at line 239 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/solver.hxx 'void Datafile::add(int &i, const char *name, bool save_repeat=false, const std::string &description="")' at line 73 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/datafile.hxx 'void Datafile::add(std::vector< int > &ivec, const char *name, bool save_repeat=false, const std::string &description="")' at line 75 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/datafile.hxx 'void Datafile::add(std::string &s, const char *name, bool save_repeat=false, const std::string &description="")' at line 77 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/datafile.hxx 'void Datafile::add(BoutReal &r, const char *name, bool save_repeat=false, const std::string &description="")' at line 79 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/datafile.hxx 'void Datafile::add(bool &b, const char *name, bool save_repeat=false, const std::string &description="")' at line 81 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/datafile.hxx 'void Datafile::add(Field2D &f, const char *name, bool save_repeat=false, const std::string &description="")' at line 83 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/datafile.hxx 'void Datafile::add(Field3D &f, const char *name, bool save_repeat=false, const std::string &description="")' at line 85 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/datafile.hxx 'void Datafile::add(FieldPerp &f, const char *name, bool save_repeat=false, const std::string &description="")' at line 87 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/datafile.hxx 'void Datafile::add(Vector2D &f, const char *name, bool save_repeat=false, const std::string &description="")' at line 89 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/datafile.hxx 'void Datafile::add(Vector3D &f, const char *name, bool save_repeat=false, const std::string &description="")' at line 91 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/datafile.hxx 'void InterpolationFactory::add(CreateInterpCallback interp, const std::string &name)' at line 63 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/interpolation_factory.hxx 'void multioutbuf< char_type, traits >::add(std::basic_ostream< char_type, traits > &str)' at line 19 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/multiostream.hxx 'void multiostream< char_type, traits >::add(std::basic_ostream< char_type, traits > &str)' at line 84 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/multiostream.hxx 'void Output::add(std::basic_ostream< char, _Tr > &str)' at line 105 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/output.hxx 'void SlepcSolver::add(Field2D &v, const std::string &name, const std::string &description="") override' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/slepc/slepc.hxx 'void SlepcSolver::add(Field3D &v, const std::string &name, const std::string &description="") override' at line 106 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/slepc/slepc.hxx 'void SlepcSolver::add(Vector2D &v, const std::string &name, const std::string &description="") override' at line 113 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/slepc/slepc.hxx 'void SlepcSolver::add(Vector3D &v, const std::string &name, const std::string &description="") override' at line 120 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/slepc/slepc.hxx /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/boundary_factory.cxx:339: warning: no matching class member found for void BoundaryFactory::addMod(BoundaryModifier *bmod, const string &name) Possible candidates: 'void BoundaryFactory::addMod(BoundaryModifier *bmod, const std::string &name)' at line 93 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/boundary_factory.hxx 'void BoundaryFactory::addMod(BoundaryModifier *bmod, const char *name)' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/boundary_factory.hxx /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/coordinates.cxx:1229: warning: no matching class member found for Field2D Coordinates::DDZ(const MAYBE_UNUSED(Field2D &f), CELL_LOC loc, const std::string &method, const std::string ®ion) Possible candidates: 'Field2D Coordinates::DDZ(const Field2D &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT", const std::string ®ion="RGN_NOBNDRY")' at line 184 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/coordinates.hxx 'Field2D Coordinates::DDZ(const Field2D &f, CELL_LOC outloc, const std::string &method, REGION region)' at line 186 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/coordinates.hxx 'Field2D Coordinates::DDZ(const Field2D &f, CELL_LOC outloc, DIFF_METHOD method, REGION region=RGN_NOBNDRY)' at line 186 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/coordinates.hxx /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/coordinates.cxx:1244: warning: no matching class member found for Field2D Coordinates::Grad_par(const Field2D &var, MAYBE_UNUSED(CELL_LOC outloc), const std::string &method) Possible candidates: 'Field2D Coordinates::Grad_par(const Field2D &var, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT")' at line 189 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/coordinates.hxx 'Field2D Coordinates::Grad_par(const Field2D &f, CELL_LOC outloc, DIFF_METHOD method)' at line 191 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/coordinates.hxx 'Field3D Coordinates::Grad_par(const Field3D &var, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT")' at line 193 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/coordinates.hxx 'Field3D Coordinates::Grad_par(const Field3D &f, CELL_LOC outloc, DIFF_METHOD method)' at line 195 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/coordinates.hxx /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/coordinates.cxx:1265: warning: no matching class member found for Field2D Coordinates::Vpar_Grad_par(const Field2D &v, const Field2D &f, MAYBE_UNUSED(CELL_LOC outloc), const std::string &method) Possible candidates: 'Field2D Coordinates::Vpar_Grad_par(const Field2D &v, const Field2D &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT")' at line 198 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/coordinates.hxx 'Field2D Coordinates::Vpar_Grad_par(const Field2D &v, const Field2D &f, CELL_LOC outloc, DIFF_METHOD method)' at line 203 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/coordinates.hxx 'Field3D Coordinates::Vpar_Grad_par(const Field3D &v, const Field3D &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT")' at line 208 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/coordinates.hxx 'Field3D Coordinates::Vpar_Grad_par(const Field3D &v, const Field3D &f, CELL_LOC outloc, DIFF_METHOD method)' at line 213 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/coordinates.hxx /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/index_derivs.cxx:59: warning: no matching class member found for STAGGER Mesh::getStagger(CELL_LOC vloc, MAYBE_UNUSED(CELL_LOC inloc), const CELL_LOC outloc, const CELL_LOC allowedStaggerLoc) const Possible candidates: 'STAGGER Mesh::getStagger(const CELL_LOC inloc, const CELL_LOC outloc, const CELL_LOC allowedloc) const' at line 662 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/mesh.hxx 'STAGGER Mesh::getStagger(const CELL_LOC vloc, const CELL_LOC inloc, const CELL_LOC outloc, const CELL_LOC allowedloc) const' at line 669 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/mesh.hxx sh: line 1: latex: command not found error: Problems running latex. Check your installation or look for typos in _formulas.tex and check _formulas.log! sh: line 1: latex: command not found error: Problems running latex. Check your installation or look for typos in _formulas_dark.tex and check _formulas_dark.log! /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/bout_enum_class.hxx:68: warning: Unsupported xml/html tag found g lists... Determining which enums are documented Computing member relations... Building full member lists recursively... Adding members to member groups. Computing member references... Inheriting documentation... Generating disk names... Adding source references... Adding xrefitems... Sorting member lists... Setting anonymous enum type... Computing dependencies between directories... Generating citations page... Counting members... Counting data structures... Resolving user defined references... Finding anchors and sections in the documentation... Transferring function references... Combining using relations... Adding members to index pages... Correcting members for VHDL... Computing tooltip texts... Generating style sheet... Generating search indices... Generating images for formulas in HTML... Generating example documentation... Generating file sources... Generating file documentation... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/boundary_factory.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/boundary_op.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/boundary_region.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/boundary_standard.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/array.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/assert.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/bout_enum_class.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/constants.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/coordinates.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/deprecated.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/deriv_store.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/expr.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/field_visitor.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/fieldgroup.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/format.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/fv_ops.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/generic_factory.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/globalfield.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/griddata.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/index_derivs.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/index_derivs_interface.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/invert/laplacexy.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/invert/laplacexz.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/invertable_operator.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/macro_for_each.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/mesh.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/monitor.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/openmpwrap.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/paralleltransform.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4./builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/difops.hxx:290: warning: The following parameter of Div_par_K_Grad_par(BoutReal kY, const Field2D &f, CELL_LOC outloc=CELL_DEFAULT) is not documented: parameter 'outloc' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/difops.hxx:198: warning: The following parameter of Grad2_par2(const Field2D &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT") is not documented: parameter 'method' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/gyro_average.hxx:52: warning: argument 'flags' of command @param is not found in the argument list of gyroPade0(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/gyro_average.hxx:52: warning: The following parameters of gyroPade0(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) are not documented: parameter 'inner_boundary_flags' parameter 'outer_boundary_flags' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/gyro_average.hxx:84: warning: argument 'flags' of command @param is not found in the argument list of gyroPade1(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/gyro_average.hxx:84: warning: The following parameters of gyroPade1(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) are not documented: parameter 'inner_boundary_flags' parameter 'outer_boundary_flags' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/gyro_average.hxx:120: warning: argument 'flags' of command @param is not found in the argument list of gyroPade2(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/gyro_average.hxx:120: warning: The following parameters of gyroPade2(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) are not documented: parameter 'inner_boundary_flags' parameter 'outer_boundary_flags' 4.2/build_mpich/include/bout/petsclib.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/physicsmodel.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/region.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/rkscheme.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/rvec.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/scorepwrapper.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/slepclib.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/snb.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/solver.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/solverfactory.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/surfaceiter.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/sys/expressionparser.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/sys/gettext.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/sys/range.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/sys/timer.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/sys/type_name.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/sys/uncopyable.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/sys/uuid.h... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/sys/variant.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/template_combinations.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/traits.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout_types.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/boutcomm.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/boutexception.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/boutmain.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/cyclic_reduction.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/datafile.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dcomplex.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/derivs.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/difops.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/fft.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/field.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/field2d.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/field3d.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/field_data.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/field_factory.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/fieldperp.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/globals.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/gyro_average.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/initialprofiles.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/interpolation.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/interpolation_factory.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/invert_laplace.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/invert_parderiv.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/lapack_routines.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/mask.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/msg_stack.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/multiostream.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/options.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/options_netcdf.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/optionsreader.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/output.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/parallel_boundary_op.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/parallel_boundary_region.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/pvode/band.h... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/pvode/cvdiag.h... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/pvode/cvode.h... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/pvode/cvspgmr.h... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/pvode/iterativ.h... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/pvode/llnlmath.h... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/pvode/llnltyps.h... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/pvode/nvector.h... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/pvode/pvbbdpre.h... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/pvode/smalldense.h... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/pvode/spgmr.h... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/pvode/vector.h... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/smoothing.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/sourcex.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/stencils.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/unused.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/utils.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/vecops.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/vector2d.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/vector3d.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/where.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/bout++-time.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/bout++-time.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/bout++.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/field/field.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/field/field2d.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/field/field3d.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/field/field_data.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/field/field_factory.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/field/fieldgenerators.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/field/fieldgenerators.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/field/fieldgroup.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/field/fieldperp.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/field/gen_fieldops.py... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/field/generated_fieldops.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/field/globalfield.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/field/initialprofiles.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/field/vecops.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/field/vector2d.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/field/vector3d.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/field/where.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/datafile.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/dataformat.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/formatfactory.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/formatfactory.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/fft_fftw.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/lapack_routines.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/cyclic/cyclic_laplace.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/cyclic/cyclic_laplace.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/multigrid/multigrid_alg.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/multigrid/multigrid_laplace.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/multigrid/multigrid_laplace.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/multigrid/multigrid_solver.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/mumps/mumps_laplace.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/mumps/mumps_laplace.hxx... Generating docs for file /builddir/build/B/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/difops.hxx:290: warning: The following parameter of Div_par_K_Grad_par(BoutReal kY, const Field2D &f, CELL_LOC outloc=CELL_DEFAULT) is not documented: parameter 'outloc' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/difops.hxx:198: warning: The following parameter of Grad2_par2(const Field2D &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT") is not documented: parameter 'method' UILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/naulin/naulin_laplace.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/naulin/naulin_laplace.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/pdd/pdd.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/pdd/pdd.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/petsc/petsc_laplace.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/petsc/petsc_laplace.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/serial_band/serial_band.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/serial_band/serial_band.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/serial_tri/serial_tri.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/serial_tri/serial_tri.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/shoot/shoot_laplace.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/shoot/shoot_laplace.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/spt/spt.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/spt/spt.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/invert_laplace.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/laplacefactory.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/laplacefactory.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplacexy/laplacexy.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplacexz/impls/cyclic/laplacexz-cyclic.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplacexz/impls/cyclic/laplacexz-cyclic.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplacexz/impls/petsc/laplacexz-petsc.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplacexz/impls/petsc/laplacexz-petsc.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplacexz/laplacexz.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/parderiv/impls/cyclic/cyclic.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/parderiv/impls/cyclic/cyclic.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/parderiv/invert_parderiv.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/parderiv/parderiv_factory.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/boundary_factory.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/boundary_region.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/boundary_standard.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/coordinates.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/data/gridfromfile.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/data/gridfromoptions.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/difops.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/fv_ops.cxx... Generating docs for file /builddir//builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/gyro_average.hxx:52: warning: argument 'flags' of command @param is not found in the argument list of gyroPade0(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/gyro_average.hxx:52: warning: The following parameters of gyroPade0(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) are not documented: parameter 'inner_boundary_flags' parameter 'outer_boundary_flags' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/gyro_average.hxx:84: warning: argument 'flags' of command @param is not found in the argument list of gyroPade1(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/gyro_average.hxx:84: warning: The following parameters of gyroPade1(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) are not documented: parameter 'inner_boundary_flags' parameter 'outer_boundary_flags' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/gyro_average.hxx:120: warning: argument 'flags' of command @param is not found in the argument list of gyroPade2(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/gyro_average.hxx:120: warning: The following parameters of gyroPade2(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) are not documented: parameter 'inner_boundary_flags' parameter 'outer_boundary_flags' build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/impls/bout/boutmesh.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/impls/bout/boutmesh.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/index_derivs.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/interpolation.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/interpolation/bilinear.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/interpolation/hermite_spline.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/interpolation/interpolation_factory.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/interpolation/lagrange_4pt.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/interpolation/monotonic_hermite_spline.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/mesh.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/meshfactory.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/meshfactory.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/parallel/fci.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/parallel/fci.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/parallel/identity.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/parallel/shiftedmetric.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/parallel_boundary_op.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/parallel_boundary_region.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/surfaceiter.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/physics/gyro_average.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/physics/physicsmodel.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/physics/smoothing.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/physics/snb.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/physics/sourcex.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/adams_bashforth/adams_bashforth.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/adams_bashforth/adams_bashforth.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/arkode/arkode.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/arkode/arkode.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/cvode/cvode.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/cvode/cvode.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/euler/euler.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/euler/euler.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/ida/ida.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/ida/ida.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/imex-bdf2/imex-bdf2.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/imex-bdf2/imex-bdf2.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/karniadakis/karniadakis.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/karniadakis/karniadakis.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/petsc/petsc.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/petsc/petsc.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/power/power.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/power/power.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/pvode/pvode.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/pvode/pvode.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rk3-ssp/rk3-ssp.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rk3-ssp/rk3-ssp.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rk4/rk4.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rk4/rk4.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/impls/cashkarp/cashkarp.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/impls/cashkarp/cashkarp.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/impls/rk4simple/rk4simple.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/impls/rk4simple/rk4simple.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/impls/rkf34/rkf34.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/impls/rkf34/rkf34.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/impls/rkf45/rkf45.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/impls/rkf45/rkf45.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/rkgeneric.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/rkgeneric.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/rkscheme.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/rkschemefactory.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/rkschemefactory.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/slepc/slepc.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/slepc/slepc.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/snes/snes.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/snes/snes.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/split-rk/split-rk.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/split-rk/split-rk.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/solver.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/solverfactory.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/bout_types.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/boutcomm.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/boutexception.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/derivs.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sy/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/array.hxx:385: warning: Unsupported xml/html tag found s/expressionparser.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/msg_stack.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/options.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/options/optionparser.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/options/options_ini.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/options/options_ini.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/options/options_netcdf.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/optionsreader.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/output.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/petsclib.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/range.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/slepclib.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/timer.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/type_name.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/utils.cxx... Generating page documentation... Generating group documentation... Generating class documentation... Generating docs for compound AdamsBashforthSolver... Generating docs for compound Add... Generating docs for compound ArkodeSolver... Generating docs for compound Array... Generating docs for compound ArrayData... Generating docs for compound asExpr... Generating docs for compound asExpr< double >... Generating docs for compound asExpr< Field3D >... Generating docs for compound asExpr< float >... Generating docs for compound asExpr< int >... Generating docs for compound Bilinear... Generating docs for compound BinaryExpr... Generating docs for compound BinaryResult... Generating docs for compound BoundaryConstGradient... Generating docs for compound BoundaryConstLaplace... Generating docs for compound BoundaryDirichlet... Generating docs for compound BoundaryDirichlet_2ndOrder... Generating docs for compound BoundaryDirichlet_4thOrder... Generating docs for compound BoundaryDirichlet_O3... Generating docs for compound BoundaryDirichlet_O4... Generating docs for compound BoundaryDivCurl... Generating docs for compound BoundaryFactory... Generating docs for compound BoundaryFree... Generating docs for compound BoundaryFree_O2... Generating docs for compound BoundaryFree_O3... Generating docs for compound BoundaryFromFieldAligned... Generating docs for compound BoundaryModifier... Generating docs for compound BoundaryNeumann... Generating docs for compound BoundaryNeumann2... Generating docs for compound BoundaryNeumann_2ndOrder... Generating docs for compound BoundaryNeumann_4thOrder... Generating docs for compound BoundaryNeumann_NonOrthogonal... Generating docs for compound BoundaryNeumann_O4... Generating docs for compound BoundaryNeumannPar... Generating docs for compound BoundaryOp... Generating docs for compound BoundaryOpBase... Generating docs for compound BoundaryOpPar... Generating docs for compound BoundaryOpPar_dirichlet... Generating docs for compound BoundaryOpPar_dirichlet_interp... Generating docs for compound BoundaryOpPar_dirichlet_O3... Generating docs for compound BoundaryOpPar_neumann... Generating docs for compound BoundaryRegion... Generating docs for compound BoundaryRegionBase... Generating docs for compound BoundaryRegionPar... Generating docs for nested compound BoundaryRegionPar::IndexPoint... Generating docs for nested compound BoundaryRegionPar::Indices... Generating docs for nested compound BoundaryRegionPar::RealPoint... Generating docs for compound BoundaryRegionXIn... Generating docs for compound BoundaryRegionXOut... Generating docs for compound BoundaryRegionYDown... Generating docs for co/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx:203: warning: The following parameter of DataFormat::getAttribute(const std::string &varname, const std::string &attrname, BoutReal &value)=0 is not documented: parameter 'value' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx:187: warning: The following parameter of DataFormat::getAttribute(const std::string &varname, const std::string &attrname, int &value)=0 is not documented: parameter 'value' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx:171: warning: The following parameter of DataFormat::getAttribute(const std::string &varname, const std::string &attrname, std::string &text)=0 is not documented: parameter 'text' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/generic_factory.hxx:52: warning: The following parameter of Factory::create(const std::string &name, Args &&... args) is not documented: parameter 'args' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/field2d.hxx:58: warning: The following parameters of Field2D::Field2D(Mesh *localmesh=nullptr, CELL_LOC location_in=CELL_CENTRE, DirectionTypes directions_in={YDirectionType::Standard, ZDirectionType::Average}) are not documented: parameter 'location_in' parameter 'directions_in' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/griddata.hxx:208: warning: The following parameter of GridFromOptions::get(Mesh *mesh, BoutReal &rval, const std::string &name, BoutReal def=0.0) is not documented: parameter 'def' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/griddata.hxx:182: warning: The following parameter of GridFromOptions::get(Mesh *mesh, std::string &sval, const std::string &name, const std::string &def="") is not documented: parameter 'def' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx:203: warning: The following parameter of H5Format::getAttribute(const std::string &varname, const std::string &attrname, BoutReal &value) is not documented: parameter 'value' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx:187: warning: The following parameter of H5Format::getAttribute(const std::string &varname, const std::string &attrname, int &value) is not documented: parameter 'value' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx:171: warning: The following parameter of H5Format::getAttribute(const std::string &varname, const std::string &attrname, std::string &text) is not documented: parameter 'text' mpound BoundaryRegionYUp... Generating docs for compound BoundaryRelax... Generating docs for compound BoundaryRobin... Generating docs for compound BoundaryToFieldAligned... Generating docs for compound BoundaryWidth... Generating docs for compound BoundaryZeroLaplace... Generating docs for compound BoundaryZeroLaplace2... Generating docs for compound BoutComm... Generating docs for compound BoutException... Generating docs for compound BoutIterationFail... Generating docs for compound BoutMask... Generating docs for compound BoutMesh... Generating docs for nested compound BoutMesh::CommHandle... Generating docs for compound BoutMonitor... Generating docs for compound BoutRhsFail... Generating docs for compound CASHKARPScheme... Generating docs for compound ConditionalOutput... Generating docs for compound Coordinates... Generating docs for compound CvodeSolver... Generating docs for compound CyclicReduce... Generating docs for compound Datafile... Generating docs for nested compound Datafile::VarStr... Generating docs for compound DataFormat... Generating docs for compound DeferredFunction... Generating docs for compound DerivativeStore... Generating docs for compound DerivativeType... Generating docs for compound DirectionTypes... Generating docs for compound Divide... Generating docs for compound DummyOutput... Generating docs for compound EmptyFormat... Generating docs for compound enumWrapper... Generating docs for compound EulerSolver... Generating docs for compound ExpressionParser... Generating docs for nested compound ExpressionParser::LexInfo... Generating docs for compound exprTraits... Generating docs for compound exprTraits< double >... Generating docs for compound exprTraits< float >... Generating docs for compound exprTraits< int >... Generating docs for compound Factory... Generating docs for compound FCIMap... Generating docs for compound FCITransform... Generating docs for compound fcmplx... Generating docs for compound Field... Generating docs for compound Field2D... Generating docs for compound Field2DExpr... Generating docs for compound Field3D... Generating docs for compound Field3DExpr... Generating docs for compound FieldAbs... Generating docs for compound FieldATan... Generating docs for compound FieldBallooning... Generating docs for compound FieldBinary... Generating docs for compound FieldCos... Generating docs for compound FieldCosh... Generating docs for compound FieldData... Generating docs for compound FieldErf... Generating docs for compound FieldFactory... Generating docs for compound FieldFunction... Generating docs for compound FieldGaussian... Generating docs for compound FieldGenerator... Generating docs for compound FieldGenOneArg... Generating docs for compound FieldGenTwoArg... Generating docs for compound FieldGroup... Generating docs for compound FieldHeaviside... Generating docs for compound FieldMax... Generating docs for compound FieldMin... Generating docs for compound FieldMixmode... Generating docs for compound FieldNull... Generating docs for compound FieldPerp... Generating docs for compound FieldRound... Generating docs for compound FieldSin... Generating docs for compound FieldSinh... Generating docs for compound FieldSqrt... Generating docs for compound FieldTanh... Generating docs for compound FieldTanhHat... Generating docs for compound FieldValue... Generating docs for compound FieldValuePtr... Generating docs for compound FieldVisitor... Generating docs for compound FormatFactory... Generating docs for compound GlobalField... Generating docs for compound GlobalField2D... Generating docs for compound GlobalField3D... Generating docs for compound GridDataSource... Generating docs for compound GridFile... Generating docs for compound GridFromOptions... Generating docs for compound H5Format... Generating docs for compound HermiteSpline... Generating docs for compound IdaSolver... Generating docs for compound IMEXBDF2... Generating docs for compound Interpolation... Generating docs for compound InterpolationFactory... Generating docs for compound InvertPar... Generati/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/petsc/petsc_laplace.cxx:908: warning: argument 'coef1' from the argument list of LaplacePetsc::Coeffs has multiple @param documentation sections /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/petsc/petsc_laplace.cxx:908: warning: argument 'coef2' from the argument list of LaplacePetsc::Coeffs has multiple @param documentation sections /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/petsc/petsc_laplace.cxx:908: warning: argument 'coef3' from the argument list of LaplacePetsc::Coeffs has multiple @param documentation sections /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/petsc/petsc_laplace.cxx:908: warning: argument 'coef4' from the argument list of LaplacePetsc::Coeffs has multiple @param documentation sections /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/petsc/petsc_laplace.cxx:908: warning: argument 'coef5' from the argument list of LaplacePetsc::Coeffs has multiple @param documentation sections /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/petsc/petsc_laplace.cxx:851: warning: argument 'MatA' from the argument list of LaplacePetsc::Element has multiple @param documentation sections /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/invert_laplace.hxx:208: warning: The following parameters of Laplacian::create(Options *opt=nullptr, const CELL_LOC loc=CELL_CENTRE, Mesh *mesh_in=nullptr) are not documented: parameter 'loc' parameter 'mesh_in' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/invert_laplace.cxx:380: warning: argument 'avec' from the argument list of Laplacian::tridagMatrix has multiple @param documentation sections /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/invert_laplace.cxx:380: warning: argument 'bvec' from the argument list of Laplacian::tridagMatrix has multiple @param documentation sections /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/invert_laplace.cxx:380: warning: argument 'cvec' from the argument list of Laplacian::tridagMatrix has multiple @param documentation sections /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/mesh.hxx:756: warning: argument 'v' of command @param is not found in the argument list of Mesh::indexVDDX(const T &vel, const T &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT", REGION region=RGN_NOBNDRY) const /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/mesh.hxx:756: warning: The following parameter of Mesh::indexVDDX(const T &vel, const T &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT", REGION region=RGN_NOBNDRY) const is not documented: parameter 'vel' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx:203: warning: The following parameter of NcFormat::getAttribute(const std::string &varname, const std::string &attrname, BoutReal &value) is not documented: parameter 'value' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx:187: warning: The following parameter of NcFormat::getAttribute(const std::string &varname, const std::string &attrname, int &value) is not documented: parameter 'value' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx:171: warning: The following parameter of NcFormat::getAttribute(const std::string &varname, const std::string &attrname, std::string &text) is not documented: parameter 'text' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx:203: warning: The following parameter of Ncxx4::getAttribute(const std::string &varname, const std::string &attrname, BoutReal &value) is not documented: parameter 'value' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx:187: warning: The following parameter of Ncxx4::getAttribute(const std::string &varname, const std::string &attrname, int &value) is not documented: parameter 'value' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx:171: warning: The following parameter of Ncxx4::getAttribute(const std::string &varname, const std::string &attrname, std::string &text) is not documented: parameter 'text' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/options.hxx:161: warning: argument 'parent' of command @param is not found in the argument list of Options::Options(Options *parent_instance, std::string full_name) /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/options.hxx:161: warning: argument 'sectionName' of command @param is not found in the argument list of Options::Options(Options *parent_instance, std::string full_name) /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/options.hxx:161: warning: The following parameters of Options::Options(Options *parent_instance, std::string full_name) are not documented: parameter 'parent_instance' parameter 'full_name' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/physicsmodel.hxx:229: warning: The following parameter of PhysicsModel::bout_solve(Field2D &var, const char *name, const std::string &description="") is not documented: parameter 'description' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/paralleltransform.hxx:259: warning: The following parameter of ShiftedMetric::shiftZ(const Field3D &f, const Field2D &zangle, const std::string ®ion="RGN_NOX") const is not documented: parameter 'region' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/paralleltransform.hxx:275: warning: The following parameter of ShiftedMetric::shiftZ(const Field3D &f, const Tensor< dcomplex > &phs, const YDirectionType y_direction_out, const std::string ®ion="RGN_NOX") const is not documented: parameter 'region' ng docs for compound InvertParCR... Generating docs for compound KarniadakisSolver... Generating docs for compound Lagrange4pt... Generating docs for compound LaplaceCyclic... Generating docs for compound LaplaceFactory... Generating docs for compound LaplaceMultigrid... Generating docs for compound LaplaceMumps... Generating docs for compound LaplaceNaulin... Generating docs for compound LaplacePDD... Generating docs for nested compound LaplacePDD::PDD_data... Generating docs for compound LaplacePetsc... Generating docs for compound LaplaceSerialBand... Generating docs for compound LaplaceSerialTri... Generating docs for compound LaplaceShoot... Generating docs for compound LaplaceSPT... Generating docs for nested compound LaplaceSPT::SPT_data... Generating docs for compound LaplaceXY... Generating docs for nested compound LaplaceXY::LaplaceXYMonitor... Generating docs for compound LaplaceXZ... Generating docs for compound LaplaceXZcyclic... Generating docs for compound LaplaceXZpetsc... Generating docs for nested compound LaplaceXZpetsc::YSlice... Generating docs for compound Laplacian... Generating docs for compound LegacyModel... Generating docs for compound Literal... Generating docs for compound LoadVarOp... Generating docs for compound Matrix... Generating docs for compound Mesh... Generating docs for compound MeshFactory... Generating docs for compound metaData... Generating docs for compound Monitor... Generating docs for compound MonotonicHermiteSpline... Generating docs for compound MsgStack... Generating docs for compound MsgStackItem... Generating docs for compound Multigrid1DP... Generating docs for compound Multigrid2DPf1D... Generating docs for compound MultigridAlg... Generating docs for compound MultigridSerial... Generating docs for compound multiostream... Generating docs for compound multioutbuf... Generating docs for compound multioutbuf_init... Generating docs for compound Multiply... Generating docs for compound NcFormat... Generating docs for compound Ncxx4... Generating docs for compound OptionINI... Generating docs for compound OptionParser... Generating docs for compound Options... Generating docs for nested compound Options::AttributeType... Generating docs for nested compound Options::OptionValue... Generating docs for compound OptionsReader... Generating docs for compound Output... Generating docs for compound ParallelTransform... Generating docs for compound ParallelTransformIdentity... Generating docs for compound ParDerivFactory... Generating docs for compound ParseException... Generating docs for compound PetscLib... Generating docs for compound PetscSolver... Generating docs for compound PhysicsModel... Generating docs for nested compound PhysicsModel::PhysicsModelMonitor... Generating docs for compound PncFormat... Generating docs for compound Power... Generating docs for compound PowerSolver... Generating docs for compound produceCombinations... Generating docs for compound PromoteType... Generating docs for compound PvodeSolver... Generating docs for compound RangeIterator... Generating docs for compound Region... Generating docs for compound RegionStats... Generating docs for compound RegisterInFactory... Generating docs for compound RegisterInFactory< Solver, DerivedType >... Generating docs for compound registerMethod... Generating docs for compound RK3SSP... Generating docs for compound RK4SIMPLEScheme... Generating docs for compound RK4Solver... Generating docs for compound RKF34Scheme... Generating docs for compound RKF45Scheme... Generating docs for compound RKGenericSolver... Generating docs for compound RKScheme... Generating docs for compound RKSchemeFactory... Generating docs for compound RunMetrics... Generating docs for compound SaveDerivsOp... Generating docs for compound SaveVarOp... Generating docs for compound Set... Generating docs for compound ShiftedMetric... Generating docs for nested compound ShiftedMetric::ParallelSlicePhase... Generating docs for compound SlepcLib... Generating docs for compound SlepcSolver... Generating docs for compound snes_info... Generat/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/surfaceiter.hxx:35: warning: The following parameter of SurfaceIter::SurfaceIter(Mesh *mesh, bool include_guards=false) is not documented: parameter 'include_guards' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/index_derivs_interface.hxx:276: warning: argument 'v' of command @param is not found in the argument list of bout::derivatives::index::VDDX(const T &vel, const T &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT", const std::string ®ion="RGN_NOBNDRY") /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/index_derivs_interface.hxx:276: warning: The following parameter of bout::derivatives::index::VDDX(const T &vel, const T &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT", const std::string ®ion="RGN_NOBNDRY") is not documented: parameter 'vel' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/sys/variant.hxx:81: warning: Found unknown command '\v' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/sys/variant.hxx:118: warning: Found unknown command '\v' ing docs for compound SNESSolver... Generating docs for compound Solver... Generating docs for nested compound Solver::VarStr... Generating docs for compound SolverFactory... Generating docs for compound SpecificInd... Generating docs for compound SplitFluxDerivativeType... Generating docs for compound SplitRK... Generating docs for compound stencil... Generating docs for compound Subtract... Generating docs for compound SurfaceIter... Generating docs for compound Tensor... Generating docs for compound Timer... Generating docs for nested compound Timer::timer_info... Generating docs for compound TypeContainer... Generating docs for compound Uncopyable... Generating docs for compound Vector2D... Generating docs for compound Vector3D... Generating concept documentation... Generating namespace index... Generating docs for namespace bout Generating docs for compound bout::HeatFluxSNB... Generating docs for namespace bout::derivatives Generating docs for namespace bout::derivatives::index Generating docs for namespace bout::experimental Generating docs for compound bout::experimental::CommandLineArgs... Generating docs for compound bout::experimental::OptionsNetCDF... Generating docs for namespace bout::fft Generating docs for namespace bout::globals Generating docs for namespace bout::inversion Generating docs for compound bout::inversion::InvertableOperator... Generating docs for namespace bout::utils Generating docs for compound bout::utils::_Unique_if... Generating docs for compound bout::utils::_Unique_if< T[]>... Generating docs for compound bout::utils::_Unique_if< T[N]>... Generating docs for compound bout::utils::function_traits... Generating docs for compound bout::utils::function_traits< R(*)(Args...)>... Generating docs for nested compound bout::utils::function_traits< R(*)(Args...)>::arg... Generating docs for namespace bout::utils::details Generating docs for compound bout::utils::details::CompareTypes... Generating docs for compound bout::utils::details::CompareTypes< T, T >... Generating docs for compound bout::utils::details::IsEqual... Generating docs for compound bout::utils::details::StaticCastOrThrow... Generating docs for compound bout::utils::details::ToString... Generating docs for namespace FV Generating docs for compound FV::Fromm... Generating docs for compound FV::MC... Generating docs for compound FV::MinMod... Generating docs for compound FV::Stencil1D... Generating docs for compound FV::Upwind... Generating docs for namespace gen_fieldops Generating docs for compound gen_fieldops::Field... Generating docs for namespace pvode Generating docs for compound pvode::bandmat_type... Generating docs for compound pvode::CVodeMemRec... Generating docs for compound pvode::machenv_type... Generating docs for compound pvode::nvec_type... Generating docs for compound pvode::pvbbddata_type... Generating docs for compound pvode::SpgmrMemRec... Generating docs for namespace SI Generating docs for namespace std Generating docs for compound std::hash< uuids::uuid >... Generating docs for namespace uuids Generating docs for compound uuids::basic_uuid_random_generator... Generating docs for compound uuids::uuid... Generating docs for compound uuids::uuid_name_generator... Generating docs for compound uuids::uuid_time_generator... Generating docs for namespace uuids::detail Generating docs for compound uuids::detail::sha1... Generating graph info page... Generating directory documentation... Generating index page... Generating page index... Generating module index... Generating namespace index... Generating namespace member index... Generating concept index... Generating annotated compound index... Generating alphabetical compound index... Generating hierarchical class index... Generating member index... Generating file index... Generating file member index... Generating example index... finalizing index lists... writing tag file... Generating XML output... Generating XML output for class bout::utils::_Unique_if Generating XML output for class bout::utils::_Unique_if< T[]> Generating XML output for class bout::utils:/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/array.hxx:385: warning: Unsupported xml/html tag found /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx:171: warning: The following parameter of DataFormat::getAttribute(const std::string &varname, const std::string &attrname, std::string &text)=0 is not documented: parameter 'text' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx:187: warning: The following parameter of DataFormat::getAttribute(const std::string &varname, const std::string &attrname, int &value)=0 is not documented: parameter 'value' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx:203: warning: The following parameter of DataFormat::getAttribute(const std::string &varname, const std::string &attrname, BoutReal &value)=0 is not documented: parameter 'value' :_Unique_if< T[N]> Generating XML output for class AdamsBashforthSolver Generating XML output for class Add Generating XML output for class bout::utils::function_traits< R(*)(Args...)>::arg Generating XML output for class ArkodeSolver Generating XML output for class Array Generating XML output for class ArrayData Generating XML output for class asExpr Generating XML output for class asExpr< double > Generating XML output for class asExpr< Field3D > Generating XML output for class asExpr< float > Generating XML output for class asExpr< int > Generating XML output for class Options::AttributeType Generating XML output for class pvode::bandmat_type Generating XML output for class uuids::basic_uuid_random_generator Generating XML output for class Bilinear Generating XML output for class BinaryExpr Generating XML output for class BinaryResult Generating XML output for class BoundaryConstGradient Generating XML output for class BoundaryConstLaplace Generating XML output for class BoundaryDirichlet Generating XML output for class BoundaryDirichlet_2ndOrder Generating XML output for class BoundaryDirichlet_4thOrder Generating XML output for class BoundaryDirichlet_O3 Generating XML output for class BoundaryDirichlet_O4 Generating XML output for class BoundaryDivCurl Generating XML output for class BoundaryFactory Generating XML output for class BoundaryFree Generating XML output for class BoundaryFree_O2 Generating XML output for class BoundaryFree_O3 Generating XML output for class BoundaryFromFieldAligned Generating XML output for class BoundaryModifier Generating XML output for class BoundaryNeumann Generating XML output for class BoundaryNeumann2 Generating XML output for class BoundaryNeumann_2ndOrder Generating XML output for class BoundaryNeumann_4thOrder Generating XML output for class BoundaryNeumann_NonOrthogonal Generating XML output for class BoundaryNeumann_O4 Generating XML output for class BoundaryNeumannPar Generating XML output for class BoundaryOp Generating XML output for class BoundaryOpBase Generating XML output for class BoundaryOpPar Generating XML output for class BoundaryOpPar_dirichlet Generating XML output for class BoundaryOpPar_dirichlet_interp Generating XML output for class BoundaryOpPar_dirichlet_O3 Generating XML output for class BoundaryOpPar_neumann Generating XML output for class BoundaryRegion Generating XML output for class BoundaryRegionBase Generating XML output for class BoundaryRegionPar Generating XML output for class BoundaryRegionXIn Generating XML output for class BoundaryRegionXOut Generating XML output for class BoundaryRegionYDown Generating XML output for class BoundaryRegionYUp Generating XML output for class BoundaryRelax Generating XML output for class BoundaryRobin Generating XML output for class BoundaryToFieldAligned Generating XML output for class BoundaryWidth Generating XML output for class BoundaryZeroLaplace Generating XML output for class BoundaryZeroLaplace2 Generating XML output for class BoutComm Generating XML output for class BoutException Generating XML output for class BoutIterationFail Generating XML output for class BoutMask Generating XML output for class BoutMesh Generating XML output for class BoutMonitor Generating XML output for class BoutRhsFail Generating XML output for class CASHKARPScheme Generating XML output for class bout::experimental::CommandLineArgs Generating XML output for class BoutMesh::CommHandle Generating XML output for class bout::utils::details::CompareTypes Generating XML output for class bout::utils::details::CompareTypes< T, T > Generating XML output for class ConditionalOutput Generating XML output for class Coordinates Generating XML output for class pvode::CVodeMemRec Generating XML output for class CvodeSolver Generating XML output for class CyclicReduce Generating XML output for class Datafile Generating XML output for class DataFormat Generating XML output for class DeferredFunction Generating XML output for class DerivativeStore Generating XML output for class DerivativeType Generating XML output for class DirectionTypes Gene/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/generic_factory.hxx:52: warning: The following parameter of Factory::create(const std::string &name, Args &&... args) is not documented: parameter 'args' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/field2d.hxx:58: warning: The following parameters of Field2D::Field2D(Mesh *localmesh=nullptr, CELL_LOC location_in=CELL_CENTRE, DirectionTypes directions_in={YDirectionType::Standard, ZDirectionType::Average}) are not documented: parameter 'location_in' parameter 'directions_in' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/griddata.hxx:182: warning: The following parameter of GridFromOptions::get(Mesh *mesh, std::string &sval, const std::string &name, const std::string &def="") is not documented: parameter 'def' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/griddata.hxx:208: warning: The following parameter of GridFromOptions::get(Mesh *mesh, BoutReal &rval, const std::string &name, BoutReal def=0.0) is not documented: parameter 'def' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx:171: warning: The following parameter of H5Format::getAttribute(const std::string &varname, const std::string &attrname, std::string &text) is not documented: parameter 'text' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx:187: warning: The following parameter of H5Format::getAttribute(const std::string &varname, const std::string &attrname, int &value) is not documented: parameter 'value' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx:203: warning: The following parameter of H5Format::getAttribute(const std::string &varname, const std::string &attrname, BoutReal &value) is not documented: parameter 'value' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/petsc/petsc_laplace.cxx:851: warning: argument 'MatA' from the argument list of LaplacePetsc::Element has multiple @param documentation sections /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/petsc/petsc_laplace.cxx:908: warning: argument 'coef1' from the argument list of LaplacePetsc::Coeffs has multiple @param documentation sections /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/petsc/petsc_laplace.cxx:908: warning: argument 'coef2' from the argument list of LaplacePetsc::Coeffs has multiple @param documentation sections /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/petsc/petsc_laplace.cxx:908: warning: argument 'coef3' from the argument list of LaplacePetsc::Coeffs has multiple @param documentation sections /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/petsc/petsc_laplace.cxx:908: warning: argument 'coef4' from the argument list of LaplacePetsc::Coeffs has multiple @param documentation sections /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/petsc/petsc_laplace.cxx:908: warning: argument 'coef5' from the argument list of LaplacePetsc::Coeffs has multiple @param documentation sections rating XML output for class Divide Generating XML output for class DummyOutput Generating XML output for class EmptyFormat Generating XML output for class enumWrapper Generating XML output for class EulerSolver Generating XML output for class ExpressionParser Generating XML output for class exprTraits Generating XML output for class exprTraits< double > Generating XML output for class exprTraits< float > Generating XML output for class exprTraits< int > Generating XML output for class Factory Generating XML output for class FCIMap Generating XML output for class FCITransform Generating XML output for class fcmplx Generating XML output for class Field Generating XML output for class gen_fieldops::Field Generating XML output for class Field2D Generating XML output for class Field2DExpr Generating XML output for class Field3D Generating XML output for class Field3DExpr Generating XML output for class FieldAbs Generating XML output for class FieldATan Generating XML output for class FieldBallooning Generating XML output for class FieldBinary Generating XML output for class FieldCos Generating XML output for class FieldCosh Generating XML output for class FieldData Generating XML output for class FieldErf Generating XML output for class FieldFactory Generating XML output for class FieldFunction Generating XML output for class FieldGaussian Generating XML output for class FieldGenerator Generating XML output for class FieldGenOneArg Generating XML output for class FieldGenTwoArg Generating XML output for class FieldGroup Generating XML output for class FieldHeaviside Generating XML output for class FieldMax Generating XML output for class FieldMin Generating XML output for class FieldMixmode Generating XML output for class FieldNull Generating XML output for class FieldPerp Generating XML output for class FieldRound Generating XML output for class FieldSin Generating XML output for class FieldSinh Generating XML output for class FieldSqrt Generating XML output for class FieldTanh Generating XML output for class FieldTanhHat Generating XML output for class FieldValue Generating XML output for class FieldValuePtr Generating XML output for class FieldVisitor Generating XML output for class FormatFactory Generating XML output for class FV::Fromm Generating XML output for class bout::utils::function_traits Generating XML output for class bout::utils::function_traits< R(*)(Args...)> Generating XML output for class GlobalField Generating XML output for class GlobalField2D Generating XML output for class GlobalField3D Generating XML output for class GridDataSource Generating XML output for class GridFile Generating XML output for class GridFromOptions Generating XML output for class H5Format Generating XML output for class std::hash< uuids::uuid > Generating XML output for class bout::HeatFluxSNB Generating XML output for class HermiteSpline Generating XML output for class IdaSolver Generating XML output for class IMEXBDF2 Generating XML output for class BoundaryRegionPar::IndexPoint Generating XML output for class BoundaryRegionPar::Indices Generating XML output for class Interpolation Generating XML output for class InterpolationFactory Generating XML output for class bout::inversion::InvertableOperator Generating XML output for class InvertPar Generating XML output for class InvertParCR Generating XML output for class bout::utils::details::IsEqual Generating XML output for class KarniadakisSolver Generating XML output for class Lagrange4pt Generating XML output for class LaplaceCyclic Generating XML output for class LaplaceFactory Generating XML output for class LaplaceMultigrid Generating XML output for class LaplaceMumps Generating XML output for class LaplaceNaulin Generating XML output for class LaplacePDD Generating XML output for class LaplacePetsc Generating XML output for class LaplaceSerialBand Generating XML output for class LaplaceSerialTri Generating XML output for class LaplaceShoot Generating XML output for class LaplaceSPT Generating XML output for class LaplaceXY Generating XML output for class LaplaceXY::LaplaceXYM/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/invert_laplace.hxx:208: warning: The following parameters of Laplacian::create(Options *opt=nullptr, const CELL_LOC loc=CELL_CENTRE, Mesh *mesh_in=nullptr) are not documented: parameter 'loc' parameter 'mesh_in' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/invert_laplace.cxx:380: warning: argument 'avec' from the argument list of Laplacian::tridagMatrix has multiple @param documentation sections /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/invert_laplace.cxx:380: warning: argument 'bvec' from the argument list of Laplacian::tridagMatrix has multiple @param documentation sections /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/invert_laplace.cxx:380: warning: argument 'cvec' from the argument list of Laplacian::tridagMatrix has multiple @param documentation sections /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/mesh.hxx:756: warning: argument 'v' of command @param is not found in the argument list of Mesh::indexVDDX(const T &vel, const T &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT", REGION region=RGN_NOBNDRY) const /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/mesh.hxx:756: warning: The following parameter of Mesh::indexVDDX(const T &vel, const T &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT", REGION region=RGN_NOBNDRY) const is not documented: parameter 'vel' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx:171: warning: The following parameter of NcFormat::getAttribute(const std::string &varname, const std::string &attrname, std::string &text) is not documented: parameter 'text' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx:187: warning: The following parameter of NcFormat::getAttribute(const std::string &varname, const std::string &attrname, int &value) is not documented: parameter 'value' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx:203: warning: The following parameter of NcFormat::getAttribute(const std::string &varname, const std::string &attrname, BoutReal &value) is not documented: parameter 'value' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx:171: warning: The following parameter of Ncxx4::getAttribute(const std::string &varname, const std::string &attrname, std::string &text) is not documented: parameter 'text' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx:187: warning: The following parameter of Ncxx4::getAttribute(const std::string &varname, const std::string &attrname, int &value) is not documented: parameter 'value' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx:203: warning: The following parameter of Ncxx4::getAttribute(const std::string &varname, const std::string &attrname, BoutReal &value) is not documented: parameter 'value' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/options.hxx:161: warning: argument 'parent' of command @param is not found in the argument list of Options::Options(Options *parent_instance, std::string full_name) /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/options.hxx:161: warning: argument 'sectionName' of command @param is not found in the argument list of Options::Options(Options *parent_instance, std::string full_name) /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/options.hxx:161: warning: The following parameters of Options::Options(Options *parent_instance, std::string full_name) are not documented: parameter 'parent_instance' parameter 'full_name' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/physicsmodel.hxx:229: warning: The following parameter of PhysicsModel::bout_solve(Field2D &var, const char *name, const std::string &description="") is not documented: parameter 'description' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/paralleltransform.hxx:259: warning: The following parameter of ShiftedMetric::shiftZ(const Field3D &f, const Field2D &zangle, const std::string ®ion="RGN_NOX") const is not documented: parameter 'region' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/paralleltransform.hxx:275: warning: The following parameter of ShiftedMetric::shiftZ(const Field3D &f, const Tensor< dcomplex > &phs, const YDirectionType y_direction_out, const std::string ®ion="RGN_NOX") const is not documented: parameter 'region' onitor Generating XML output for class LaplaceXZ Generating XML output for class LaplaceXZcyclic Generating XML output for class LaplaceXZpetsc Generating XML output for class Laplacian Generating XML output for class LegacyModel Generating XML output for class ExpressionParser::LexInfo Generating XML output for class Literal Generating XML output for class LoadVarOp Generating XML output for class pvode::machenv_type Generating XML output for class Matrix Generating XML output for class FV::MC Generating XML output for class Mesh Generating XML output for class MeshFactory Generating XML output for class metaData Generating XML output for class FV::MinMod Generating XML output for class Monitor Generating XML output for class MonotonicHermiteSpline Generating XML output for class MsgStack Generating XML output for class MsgStackItem Generating XML output for class Multigrid1DP Generating XML output for class Multigrid2DPf1D Generating XML output for class MultigridAlg Generating XML output for class MultigridSerial Generating XML output for class multiostream Generating XML output for class multioutbuf Generating XML output for class multioutbuf_init Generating XML output for class Multiply Generating XML output for class NcFormat Generating XML output for class Ncxx4 Generating XML output for class pvode::nvec_type Generating XML output for class OptionINI Generating XML output for class OptionParser Generating XML output for class Options Generating XML output for class bout::experimental::OptionsNetCDF Generating XML output for class OptionsReader Generating XML output for class Options::OptionValue Generating XML output for class Output Generating XML output for class ShiftedMetric::ParallelSlicePhase Generating XML output for class ParallelTransform Generating XML output for class ParallelTransformIdentity Generating XML output for class ParDerivFactory Generating XML output for class ParseException Generating XML output for class LaplacePDD::PDD_data Generating XML output for class PetscLib Generating XML output for class PetscSolver Generating XML output for class PhysicsModel Generating XML output for class PhysicsModel::PhysicsModelMonitor Generating XML output for class PncFormat Generating XML output for class Power Generating XML output for class PowerSolver Generating XML output for class produceCombinations Generating XML output for class PromoteType Generating XML output for class pvode::pvbbddata_type Generating XML output for class PvodeSolver Generating XML output for class RangeIterator Generating XML output for class BoundaryRegionPar::RealPoint Generating XML output for class Region Generating XML output for class RegionStats Generating XML output for class RegisterInFactory Generating XML output for class RegisterInFactory< Solver, DerivedType > Generating XML output for class registerMethod Generating XML output for class RK3SSP Generating XML output for class RK4SIMPLEScheme Generating XML output for class RK4Solver Generating XML output for class RKF34Scheme Generating XML output for class RKF45Scheme Generating XML output for class RKGenericSolver Generating XML output for class RKScheme Generating XML output for class RKSchemeFactory Generating XML output for class RunMetrics Generating XML output for class SaveDerivsOp Generating XML output for class SaveVarOp Generating XML output for class Set Generating XML output for class uuids::detail::sha1 Generating XML output for class ShiftedMetric Generating XML output for class SlepcLib Generating XML output for class SlepcSolver Generating XML output for class snes_info Generating XML output for class SNESSolver Generating XML output for class Solver Generating XML output for class SolverFactory Generating XML output for class SpecificInd Generating XML output for class pvode::SpgmrMemRec Generating XML output for class SplitFluxDerivativeType Generating XML output for class SplitRK Generating XML output for class LaplaceSPT::SPT_data Generating XML output for class bout::utils::details::StaticCastOrThrow Generating XML output for class stencil G/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/surfaceiter.hxx:35: warning: The following parameter of SurfaceIter::SurfaceIter(Mesh *mesh, bool include_guards=false) is not documented: parameter 'include_guards' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/index_derivs_interface.hxx:276: warning: argument 'v' of command @param is not found in the argument list of bout::derivatives::index::VDDX(const T &vel, const T &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT", const std::string ®ion="RGN_NOBNDRY") /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/index_derivs_interface.hxx:276: warning: The following parameter of bout::derivatives::index::VDDX(const T &vel, const T &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT", const std::string ®ion="RGN_NOBNDRY") is not documented: parameter 'vel' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/sys/variant.hxx:81: warning: Found unknown command '\v' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/sys/variant.hxx:118: warning: Found unknown command '\v' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/bout_enum_class.hxx:68: warning: Unsupported xml/html tag found enerating XML output for class FV::Stencil1D Generating XML output for class Subtract Generating XML output for class SurfaceIter Generating XML output for class Tensor Generating XML output for class Timer Generating XML output for class Timer::timer_info Generating XML output for class bout::utils::details::ToString Generating XML output for class TypeContainer Generating XML output for class Uncopyable Generating XML output for class FV::Upwind Generating XML output for class uuids::uuid Generating XML output for class uuids::uuid_name_generator Generating XML output for class uuids::uuid_time_generator Generating XML output for class Datafile::VarStr Generating XML output for class Solver::VarStr Generating XML output for class Vector2D Generating XML output for class Vector3D Generating XML output for class LaplaceXZpetsc::YSlice Generating XML output for namespace @110 Generating XML output for namespace @111 Generating XML output for namespace @125 Generating XML output for namespace @178 Generating XML output for namespace @179 Generating XML output for namespace @180 Generating XML output for namespace @192 Generating XML output for namespace @207 Generating XML output for namespace @208 Generating XML output for namespace @210 Generating XML output for namespace @212 Generating XML output for namespace @214 Generating XML output for namespace @216 Generating XML output for namespace @218 Generating XML output for namespace @220 Generating XML output for namespace @222 Generating XML output for namespace @224 Generating XML output for namespace @226 Generating XML output for namespace @228 Generating XML output for namespace @230 Generating XML output for namespace @240 Generating XML output for namespace @245 Generating XML output for namespace @247 Generating XML output for namespace @249 Generating XML output for namespace @252 Generating XML output for namespace @256 Generating XML output for namespace @258 Generating XML output for namespace @262 Generating XML output for namespace @5 Generating XML output for namespace bout Generating XML output for namespace bout::derivatives Generating XML output for namespace bout::derivatives::index Generating XML output for namespace bout::experimental Generating XML output for namespace bout::fft Generating XML output for namespace bout::globals Generating XML output for namespace bout::inversion Generating XML output for namespace bout::utils Generating XML output for namespace bout::utils::details Generating XML output for namespace FV Generating XML output for namespace gen_fieldops Generating XML output for namespace netCDF Generating XML output for namespace pvode Generating XML output for namespace SI Generating XML output for namespace std Generating XML output for namespace uuids Generating XML output for namespace uuids::detail Generating XML output for file boundary_factory.hxx Generating XML output for file boundary_op.hxx Generating XML output for file boundary_region.hxx Generating XML output for file boundary_standard.hxx Generating XML output for file bout.hxx Generating XML output for file array.hxx Generating XML output for file assert.hxx Generating XML output for file bout_enum_class.hxx Generating XML output for file constants.hxx Generating XML output for file coordinates.hxx Generating XML output for file deprecated.hxx Generating XML output for file deriv_store.hxx Generating XML output for file expr.hxx Generating XML output for file field_visitor.hxx Generating XML output for file fieldgroup.hxx Generating XML output for file format.hxx Generating XML output for file fv_ops.hxx Generating XML output for file generic_factory.hxx Generating XML output for file globalfield.hxx Generating XML output for file griddata.hxx Generating XML output for file index_derivs.hxx Generating XML output for file index_derivs_interface.hxx Generating XML output for file laplacexy.hxx Generating XML output for file laplacexz.hxx Generating XML output for file invertable_operator.hxx Generating XML output for file macro_for_each.hxx Generating XML output for file/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/difops.hxx:198: warning: The following parameter of Grad2_par2(const Field2D &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT") is not documented: parameter 'method' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/difops.hxx:290: warning: The following parameter of Div_par_K_Grad_par(BoutReal kY, const Field2D &f, CELL_LOC outloc=CELL_DEFAULT) is not documented: parameter 'outloc' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/gyro_average.hxx:52: warning: argument 'flags' of command @param is not found in the argument list of gyroPade0(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/gyro_average.hxx:52: warning: The following parameters of gyroPade0(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) are not documented: parameter 'inner_boundary_flags' parameter 'outer_boundary_flags' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/gyro_average.hxx:84: warning: argument 'flags' of command @param is not found in the argument list of gyroPade1(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/gyro_average.hxx:84: warning: The following parameters of gyroPade1(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) are not documented: parameter 'inner_boundary_flags' parameter 'outer_boundary_flags' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/gyro_average.hxx:120: warning: argument 'flags' of command @param is not found in the argument list of gyroPade2(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/gyro_average.hxx:120: warning: The following parameters of gyroPade2(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) are not documented: parameter 'inner_boundary_flags' parameter 'outer_boundary_flags' mesh.hxx Generating XML output for file monitor.hxx Generating XML output for file openmpwrap.hxx Generating XML output for file paralleltransform.hxx Generating XML output for file petsclib.hxx Generating XML output for file physicsmodel.hxx Generating XML output for file region.hxx Generating XML output for file rkscheme.hxx Generating XML output for file rvec.hxx Generating XML output for file scorepwrapper.hxx Generating XML output for file slepclib.hxx Generating XML output for file snb.hxx Generating XML output for file solver.hxx Generating XML output for file solverfactory.hxx Generating XML output for file surfaceiter.hxx Generating XML output for file expressionparser.hxx Generating XML output for file gettext.hxx Generating XML output for file range.hxx Generating XML output for file timer.hxx Generating XML output for file type_name.hxx Generating XML output for file uncopyable.hxx Generating XML output for file uuid.h Generating XML output for file variant.hxx Generating XML output for file template_combinations.hxx Generating XML output for file traits.hxx Generating XML output for file bout_types.hxx Generating XML output for file boutcomm.hxx Generating XML output for file boutexception.hxx Generating XML output for file boutmain.hxx Generating XML output for file cyclic_reduction.hxx Generating XML output for file datafile.hxx Generating XML output for file dataformat.hxx Generating XML output for file dcomplex.hxx Generating XML output for file derivs.hxx Generating XML output for file difops.hxx Generating XML output for file fft.hxx Generating XML output for file field.hxx Generating XML output for file field2d.hxx Generating XML output for file field3d.hxx Generating XML output for file field_data.hxx Generating XML output for file field_factory.hxx Generating XML output for file fieldperp.hxx Generating XML output for file globals.hxx Generating XML output for file gyro_average.hxx Generating XML output for file initialprofiles.hxx Generating XML output for file interpolation.hxx Generating XML output for file interpolation_factory.hxx Generating XML output for file invert_laplace.hxx Generating XML output for file invert_parderiv.hxx Generating XML output for file lapack_routines.hxx Generating XML output for file mask.hxx Generating XML output for file msg_stack.hxx Generating XML output for file multiostream.hxx Generating XML output for file options.hxx Generating XML output for file options_netcdf.hxx Generating XML output for file optionsreader.hxx Generating XML output for file output.hxx Generating XML output for file parallel_boundary_op.hxx Generating XML output for file parallel_boundary_region.hxx Generating XML output for file band.h Generating XML output for file cvdiag.h Generating XML output for file cvode.h Generating XML output for file cvspgmr.h Generating XML output for file iterativ.h Generating XML output for file llnlmath.h Generating XML output for file llnltyps.h Generating XML output for file nvector.h Generating XML output for file pvbbdpre.h Generating XML output for file smalldense.h Generating XML output for file spgmr.h Generating XML output for file vector.h Generating XML output for file smoothing.hxx Generating XML output for file sourcex.hxx Generating XML output for file stencils.hxx Generating XML output for file unused.hxx Generating XML output for file utils.hxx Generating XML output for file vecops.hxx Generating XML output for file vector2d.hxx Generating XML output for file vector3d.hxx Generating XML output for file where.hxx Generating XML output for file bout++-time.cxx Generating XML output for file bout++-time.hxx Generating XML output for file bout++.cxx Generating XML output for file field.cxx Generating XML output for file field2d.cxx Generating XML output for file field3d.cxx Generating XML output for file field_data.cxx Generating XML output for file field_factory.cxx Generating XML output for file fieldgenerators.cxx Generating XML output for file fieldgenerators.hxx Generating XML output for file fieldgroup.cxx Generating XML output for file fie/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/difops.hxx:198: warning: The following parameter of Grad2_par2(const Field2D &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT") is not documented: parameter 'method' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/difops.hxx:290: warning: The following parameter of Div_par_K_Grad_par(BoutReal kY, const Field2D &f, CELL_LOC outloc=CELL_DEFAULT) is not documented: parameter 'outloc' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/gyro_average.hxx:52: warning: argument 'flags' of command @param is not found in the argument list of gyroPade0(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/gyro_average.hxx:52: warning: The following parameters of gyroPade0(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) are not documented: parameter 'inner_boundary_flags' parameter 'outer_boundary_flags' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/gyro_average.hxx:84: warning: argument 'flags' of command @param is not found in the argument list of gyroPade1(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/gyro_average.hxx:84: warning: The following parameters of gyroPade1(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) are not documented: parameter 'inner_boundary_flags' parameter 'outer_boundary_flags' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/gyro_average.hxx:120: warning: argument 'flags' of command @param is not found in the argument list of gyroPade2(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/gyro_average.hxx:120: warning: The following parameters of gyroPade2(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) are not documented: parameter 'inner_boundary_flags' parameter 'outer_boundary_flags' ldperp.cxx Generating XML output for file gen_fieldops.py Generating XML output for file generated_fieldops.cxx Generating XML output for file globalfield.cxx Generating XML output for file initialprofiles.cxx Generating XML output for file vecops.cxx Generating XML output for file vector2d.cxx Generating XML output for file vector3d.cxx Generating XML output for file where.cxx Generating XML output for file datafile.cxx Generating XML output for file dataformat.cxx Generating XML output for file formatfactory.cxx Generating XML output for file formatfactory.hxx Generating XML output for file emptyformat.hxx Generating XML output for file h5_format.cxx Generating XML output for file h5_format.hxx Generating XML output for file nc_format.cxx Generating XML output for file nc_format.hxx Generating XML output for file ncxx4.cxx Generating XML output for file ncxx4.hxx Generating XML output for file pnetcdf.cxx Generating XML output for file pnetcdf.hxx Generating XML output for file fft_fftw.cxx Generating XML output for file lapack_routines.cxx Generating XML output for file cyclic_laplace.cxx Generating XML output for file cyclic_laplace.hxx Generating XML output for file multigrid_alg.cxx Generating XML output for file multigrid_laplace.cxx Generating XML output for file multigrid_laplace.hxx Generating XML output for file multigrid_solver.cxx Generating XML output for file mumps_laplace.cxx Generating XML output for file mumps_laplace.hxx Generating XML output for file naulin_laplace.cxx Generating XML output for file naulin_laplace.hxx Generating XML output for file pdd.cxx Generating XML output for file pdd.hxx Generating XML output for file petsc_laplace.cxx Generating XML output for file petsc_laplace.hxx Generating XML output for file serial_band.cxx Generating XML output for file serial_band.hxx Generating XML output for file serial_tri.cxx Generating XML output for file serial_tri.hxx Generating XML output for file shoot_laplace.cxx Generating XML output for file shoot_laplace.hxx Generating XML output for file spt.cxx Generating XML output for file spt.hxx Generating XML output for file invert_laplace.cxx Generating XML output for file laplacefactory.cxx Generating XML output for file laplacefactory.hxx Generating XML output for file laplacexy.cxx Generating XML output for file laplacexz-cyclic.cxx Generating XML output for file laplacexz-cyclic.hxx Generating XML output for file laplacexz-petsc.cxx Generating XML output for file laplacexz-petsc.hxx Generating XML output for file laplacexz.cxx Generating XML output for file cyclic.cxx Generating XML output for file cyclic.hxx Generating XML output for file invert_parderiv.cxx Generating XML output for file parderiv_factory.cxx Generating XML output for file boundary_factory.cxx Generating XML output for file boundary_region.cxx Generating XML output for file boundary_standard.cxx Generating XML output for file coordinates.cxx Generating XML output for file gridfromfile.cxx Generating XML output for file gridfromoptions.cxx Generating XML output for file difops.cxx Generating XML output for file fv_ops.cxx Generating XML output for file boutmesh.cxx Generating XML output for file boutmesh.hxx Generating XML output for file index_derivs.cxx Generating XML output for file interpolation.cxx Generating XML output for file bilinear.cxx Generating XML output for file hermite_spline.cxx Generating XML output for file interpolation_factory.cxx Generating XML output for file lagrange_4pt.cxx Generating XML output for file monotonic_hermite_spline.cxx Generating XML output for file mesh.cxx Generating XML output for file meshfactory.cxx Generating XML output for file meshfactory.hxx Generating XML output for file fci.cxx Generating XML output for file fci.hxx Generating XML output for file identity.cxx Generating XML output for file shiftedmetric.cxx Generating XML output for file parallel_boundary_op.cxx Generating XML output for file parallel_boundary_region.cxx Generating XML output for file surfaceiter.cxx Generating XML output for file gyro_average.cxx Generating XML output for file physicsmodel.cxx Generating XML output for file smoothing.cxx Generating XML output for file snb.cxx Generating XML output for file sourcex.cxx Generating XML output for file adams_bashforth.cxx Generating XML output for file adams_bashforth.hxx Generating XML output for file arkode.cxx Generating XML output for file arkode.hxx Generating XML output for file cvode.cxx Generating XML output for file cvode.hxx Generating XML output for file euler.cxx Generating XML output for file euler.hxx Generating XML output for file ida.cxx Generating XML output for file ida.hxx Generating XML output for file imex-bdf2.cxx Generating XML output for file imex-bdf2.hxx Generating XML output for file karniadakis.cxx Generating XML output for file karniadakis.hxx Generating XML output for file petsc.cxx Generating XML output for file petsc.hxx Generating XML output for file power.cxx Generating XML output for file power.hxx Generating XML output for file pvode.cxx Generating XML output for file pvode.hxx Generating XML output for file rk3-ssp.cxx Generating XML output for file rk3-ssp.hxx Generating XML output for file rk4.cxx Generating XML output for file rk4.hxx Generating XML output for file cashkarp.cxx Generating XML output for file cashkarp.hxx Generating XML output for file rk4simple.cxx Generating XML output for file rk4simple.hxx Generating XML output for file rkf34.cxx Generating XML output for file rkf34.hxx Generating XML output for file rkf45.cxx Generating XML output for file rkf45.hxx Generating XML output for file rkgeneric.cxx Generating XML output for file rkgeneric.hxx Generating XML output for file rkscheme.cxx Generating XML output for file rkschemefactory.cxx Generating XML output for file rkschemefactory.hxx Generating XML output for file slepc.cxx Generating XML output for file slepc.hxx Generating XML output for file snes.cxx Generating XML output for file snes.hxx Generating XML output for file split-rk.cxx Generating XML output for file split-rk.hxx Generating XML output for file solver.cxx Generating XML output for file solverfactory.cxx Generating XML output for file bout_types.cxx Generating XML output for file boutcomm.cxx Generating XML output for file boutexception.cxx Generating XML output for file derivs.cxx Generating XML output for file expressionparser.cxx Generating XML output for file msg_stack.cxx Generating XML output for file options.cxx Generating XML output for file optionparser.hxx Generating XML output for file options_ini.cxx Generating XML output for file options_ini.hxx Generating XML output for file options_netcdf.cxx Generating XML output for file optionsreader.cxx Generating XML output for file output.cxx Generating XML output for file petsclib.cxx Generating XML output for file range.cxx Generating XML output for file slepclib.cxx Generating XML output for file timer.cxx Generating XML output for file type_name.cxx Generating XML output for file utils.cxx Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/adams_bashforth/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/arkode/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/impls/bout/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/impls/cashkarp/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/cvode/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/cyclic/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplacexz/impls/cyclic/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/parderiv/impls/cyclic/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/data/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/euler/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/field/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/ida/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/imex-bdf2/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplacexz/impls/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/parderiv/impls/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/impls/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/impls/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/interpolation/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/invert/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/karniadakis/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplacexy/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplacexz/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/multigrid/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/mumps/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/naulin/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/options/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/parallel/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/parderiv/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/pdd/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/petsc/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplacexz/impls/petsc/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/petsc/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/physics/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/power/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/pvode/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/pvode/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rk3-ssp/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rk4/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/impls/rk4simple/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/impls/rkf34/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/impls/rkf45/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/serial_band/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/serial_tri/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/shoot/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/slepc/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/snes/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/split-rk/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/spt/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/sys/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/ Generating XML output for the main page Running plantuml with JAVA... type lookup cache used 18676/65536 hits=185173 misses=19455 symbol lookup cache used 21545/65536 hits=227687 misses=21545 finished... PYTHONPATH=../tools/pylib:$PYTHONPATH sphinx-build-3 -b html sphinx/ html/ Running Sphinx v5.3.0 WARNING: Invalid configuration value found: 'language = None'. Update your configuration to a valid language code. Falling back to 'en' (English). breathe module not installed recommonmark module not installed making output directory... done building [mo]: targets for 0 po files that are out of date building [html]: targets for 41 source files that are out of date updating environment: [new config] 41 added, 0 changed, 0 removed reading sources... [ 2%] _apidoc/boutdata reading sources... [ 4%] _apidoc/boututils No mlab available reading sources... [ 7%] _apidoc/zoidberg reading sources... [ 9%] api_reference reading sources... [ 12%] developer_docs/code_layout reading sources... [ 14%] developer_docs/contributing reading sources... [ 17%] developer_docs/data_types reading sources... [ 19%] developer_docs/file_io reading sources... [ 21%] developer_docs/git_basics reading sources... [ 24%] developer_docs/mesh reading sources... [ 26%] developer_docs/natural_language reading sources... [ 29%] developer_docs/performance_profiling reading sources... [ 31%] index reading sources... [ 34%] user_docs/BOUT_Gradperp_op reading sources... [ 36%] user_docs/advanced_install reading sources... [ 39%] user_docs/algebraic_operators reading sources... [ 41%] user_docs/boundary_options reading sources... [ 43%] user_docs/bout_functions_for_physics reading sources... [ 46%] user_docs/bout_options reading sources... [ 48%] user_docs/coordinates reading sources... [ 51%] user_docs/differential_operators reading sources... [ 53%] user_docs/eigenvalue_solver reading sources... [ 56%] user_docs/input_grids reading sources... [ 58%] user_docs/installing reading sources... [ 60%] user_docs/introduction reading sources... [ 63%] user_docs/invertable_operator reading sources... [ 65%] user_docs/laplacian reading sources... [ 68%] user_docs/makefiles reading sources... [ 70%] user_docs/nonlocal reading sources... [ 73%] user_docs/output_and_post reading sources... [ 75%] user_docs/parallel-transforms reading sources... [ 78%] user_docs/petsc reading sources... [ 80%] user_docs/physics_models reading sources... [ 82%] user_docs/preconditioning reading sources... [ 85%] user_docs/python reading sources... [ 87%] user_docs/python_boutcore reading sources... [ 90%] user_docs/running_bout reading sources... [ 92%] user_docs/staggered_grids reading sources... [ 95%] user_docs/testing reading sources... [ 97%] user_docs/time_integration reading sources... [100%] user_docs/variable_init /usr/lib/python3.11/site-packages/boutdata/collect.py:docstring of boutdata.collect:1: WARNING: duplicate object description of boutdata.collect, other instance in _apidoc/boutdata, use :noindex: for one of them WARNING: autodoc: failed to import module 'mayavi2' from module 'boutdata'; the following exception was raised: No module named 'enthought' /usr/lib/python3.11/site-packages/boutdata/__init__.py:docstring of boutdata:1: WARNING: duplicate object description of boutdata, other instance in _apidoc/boutdata, use :noindex: for one of them /usr/lib/python3.11/site-packages/boutdata/__init__.py:docstring of boutdata.collect.attributes:1: WARNING: duplicate object description of boutdata.attributes, other instance in _apidoc/boutdata, use :noindex: for one of them /usr/lib/python3.11/site-packages/boutdata/__init__.py:docstring of boutdata.collect.collect:1: WARNING: duplicate object description of boutdata.collect, other instance in _apidoc/boutdata, use :noindex: for one of them /usr/lib/python3.11/site-packages/boutdata/restart.py:docstring of boutdata.restart.normal:56: WARNING: Footnote [1] is not referenced. WARNING: autodoc: failed to import module 'analyse_equil_2' from module 'boututils'; the following exception was raised: No module named 'crosslines' WARNING: autodoc: failed to import module 'anim' from module 'boututils'; the following exception was raised: No module named 'tvtk' WARNING: autodoc: failed to import module 'boutgrid' from module 'boututils'; the following exception was raised: No module named 'tvtk' /usr/lib/python3.11/site-packages/boututils/calculus.py:docstring of boututils.calculus.deriv2D:14: ERROR: Unexpected indentation. WARNING: autodoc: failed to import module 'contour' from module 'boututils'; the following exception was raised: No module named 'boututils.contour' WARNING: autodoc: failed to import module 'crosslines' from module 'boututils'; the following exception was raised: No module named 'past' WARNING: autodoc: failed to import module 'efit_analyzer' from module 'boututils'; the following exception was raised: No module named 'past' WARNING: autodoc: failed to import module 'fft_deriv' from module 'boututils'; the following exception was raised: No module named 'past' WARNING: autodoc: failed to import module 'int_func' from module 'boututils'; the following exception was raised: No module named 'past' WARNING: autodoc: failed to import module 'mode_structure' from module 'boututils'; the following exception was raised: No module named 'past' looking for now-outdated files... WARNING: autodoc: failed to import module 'moment_xyzt' from module 'boututils'; the following exception was raised: No module named 'past' WARNING: autodoc: failed to import module 'plotpolslice' from module 'boututils'; the following exception was raised: No module named 'past' WARNING: autodoc: failed to import module 'radial_grid' from module 'boututils'; the following exception was raised: No module named 'past' WARNING: autodoc: failed to import module 'surface_average' from module 'boututils'; the following exception was raised: No module named 'past' WARNING: autodoc: failed to import module 'volume_integral' from module 'boututils'; the following exception was raised: No module named 'past' /usr/lib/python3.11/site-packages/boututils/__init__.py:docstring of boututils:1: WARNING: duplicate object description of boututils, other instance in _apidoc/boututils, use :noindex: for one of them /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tools/pylib/zoidberg/field.py:docstring of zoidberg.field.MagneticField.attributes:1: WARNING: duplicate object description of zoidberg.field.MagneticField.attributes, other instance in _apidoc/zoidberg, use :noindex: for one of them /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tools/pylib/zoidberg/field.py:docstring of zoidberg.field.MagneticField.boundary:1: WARNING: duplicate object description of zoidberg.field.MagneticField.boundary, other instance in _apidoc/zoidberg, use :noindex: for one of them /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tools/pylib/zoidberg/__init__.py:docstring of zoidberg:1: WARNING: duplicate object description of zoidberg, other instance in _apidoc/zoidberg, use :noindex: for one of them /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tools/pylib/zoidberg/__init__.py:docstring of zoidberg.zoidberg.make_maps:1: WARNING: duplicate object description of zoidberg.make_maps, other instance in _apidoc/zoidberg, use :noindex: for one of them /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tools/pylib/zoidberg/__init__.py:docstring of zoidberg.zoidberg.write_maps:1: WARNING: duplicate object description of zoidberg.write_maps, other instance in _apidoc/zoidberg, use :noindex: for one of them /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/api_reference.rst:4: WARNING: toctree glob pattern '_breathe_autogen/*' didn't match any documents /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/data_types.rst:75: WARNING: Definition list ends without a blank line; unexpected unindent. /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/user_docs/bout_options.rst:533: ERROR: Unexpected indentation. /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/user_docs/installing.rst:416: ERROR: Unexpected indentation. /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/user_docs/installing.rst:417: WARNING: Block quote ends without a blank line; unexpected unindent. /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/user_docs/nonlocal.rst:119: WARNING: malformed hyperlink target. /usr/lib/python3.11/site-packages/boututils/__init__.py:docstring of boututils:1: WARNING: duplicate object description of boututils, other instance in _apidoc/boututils, use :noindex: for one of them /usr/lib/python3.11/site-packages/boutdata/__init__.py:docstring of boutdata:1: WARNING: duplicate object description of boutdata, other instance in _apidoc/boutdata, use :noindex: for one of them /usr/lib/python3.11/site-packages/boutdata/__init__.py:docstring of boutdata.collect.attributes:1: WARNING: duplicate object description of boutdata.attributes, other instance in _apidoc/boutdata, use :noindex: for one of them /usr/lib/python3.11/site-packages/boutdata/__init__.py:docstring of boutdata.collect.collect:1: WARNING: duplicate object description of boutdata.collect, other instance in _apidoc/boutdata, use :noindex: for one of them WARNING: autodoc: failed to import module 'boutcore'; the following exception was raised: /usr/lib64/mpich/lib/libpetsc.so.3.17: undefined symbol: H5Pset_dxpl_mpio WARNING: autodoc: failed to import module 'boutcore'; the following exception was raised: /usr/lib64/mpich/lib/libpetsc.so.3.17: undefined symbol: H5Pset_dxpl_mpio WARNING: autodoc: failed to import module 'boutcore'; the following exception was raised: /usr/lib64/mpich/lib/libpetsc.so.3.17: undefined symbol: H5Pset_dxpl_mpio /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/user_docs/running_bout.rst:445: WARNING: Literal block expected; none found. none found pickling environment... done checking consistency... done preparing documents... done writing output... [ 2%] _apidoc/boutdata writing output... [ 4%] _apidoc/boututils writing output... [ 7%] _apidoc/zoidberg writing output... [ 9%] api_reference writing output... [ 12%] developer_docs/code_layout writing output... [ 14%] developer_docs/contributing writing output... [ 17%] developer_docs/data_types writing output... [ 19%] developer_docs/file_io writing output... [ 21%] developer_docs/git_basics writing output... [ 24%] developer_docs/mesh writing output... [ 26%] developer_docs/natural_language writing output... [ 29%] developer_docs/performance_profiling writing output... [ 31%] index writing output... [ 34%] user_docs/BOUT_Gradperp_op writing output... [ 36%] user_docs/advanced_install writing output... [ 39%] user_docs/algebraic_operators writing output... [ 41%] user_docs/boundary_options writing output... [ 43%] user_docs/bout_functions_for_physics writing output... [ 46%] user_docs/bout_options writing output... [ 48%] user_docs/coordinates writing output... [ 51%] user_docs/differential_operators writing output... [ 53%] user_docs/eigenvalue_solver writing output... [ 56%] user_docs/input_grids writing output... [ 58%] user_docs/installing writing output... [ 60%] user_docs/introduction writing output... [ 63%] user_docs/invertable_operator writing output... [ 65%] user_docs/laplacian writing output... [ 68%] user_docs/makefiles writing output... [ 70%] user_docs/nonlocal writing output... [ 73%] user_docs/output_and_post writing output... [ 75%] user_docs/parallel-transforms writing output... [ 78%] user_docs/petsc writing output... [ 80%] user_docs/physics_models writing output... [ 82%] user_docs/preconditioning writing output... [ 85%] user_docs/python writing output... [ 87%] user_docs/python_boutcore writing output... [ 90%] user_docs/running_bout writing output... [ 92%] user_docs/staggered_grids writing output... [ 95%] user_docs/testing writing output... [ 97%] user_docs/time_integration writing output... [100%] user_docs/variable_init /usr/lib/python3.11/site-packages/boutdata/restart.py:docstring of boutdata.restart.addnoise:1: WARNING: Unparseable C++ cross-reference: 'numpy.random.Generator.normal' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected end of definition. [error at 5] numpy.random.Generator.normal -----^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expecting "(" in parameters-and-qualifiers. [error at 5] numpy.random.Generator.normal -----^ If the function has a return type: Error in declarator or parameters-and-qualifiers If pointer to member declarator: Invalid C++ declaration: Expected identifier in nested name. [error at 5] numpy.random.Generator.normal -----^ If declarator-id: Invalid C++ declaration: Expected identifier in nested name. [error at 5] numpy.random.Generator.normal -----^ /usr/lib/python3.11/site-packages/boutdata/restart.py:docstring of boutdata.restart.addnoise:1: WARNING: Unparseable C++ cross-reference: 'numpy.random.Generator' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected end of definition. [error at 5] numpy.random.Generator -----^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expecting "(" in parameters-and-qualifiers. [error at 5] numpy.random.Generator -----^ If the function has a return type: Error in declarator or parameters-and-qualifiers If pointer to member declarator: Invalid C++ declaration: Expected identifier in nested name. [error at 5] numpy.random.Generator -----^ If declarator-id: Invalid C++ declaration: Expected identifier in nested name. [error at 5] numpy.random.Generator -----^ /usr/lib/python3.11/site-packages/boutdata/restart.py:docstring of boutdata.restart.addnoise:1: WARNING: undefined label: 'random-quick-start' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:81: WARNING: unknown document: '../_breathe_autogen/file/bout_09_09_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:87: WARNING: unknown document: '../_breathe_autogen/file/field2d_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:93: WARNING: unknown document: '../_breathe_autogen/file/field3d_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:100: WARNING: unknown document: '../_breathe_autogen/file/field__data_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:105: WARNING: unknown document: '../_breathe_autogen/file/fieldperp_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:112: WARNING: unknown document: '../_breathe_autogen/file/initialprofiles_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:117: WARNING: unknown document: '../_breathe_autogen/file/vecops_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:117: WARNING: unknown document: '../_breathe_autogen/file/difops_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:124: WARNING: unknown document: '../_breathe_autogen/file/vector2d_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:129: WARNING: unknown document: '../_breathe_autogen/file/vector3d_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:133: WARNING: unknown document: '../_breathe_autogen/file/where_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:139: WARNING: unknown document: '../_breathe_autogen/file/datafile_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:145: WARNING: unknown document: '../_breathe_autogen/file/formatfactory_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:147: WARNING: unknown document: '../_breathe_autogen/file/formatfactory_8hxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:151: WARNING: unknown document: '../_breathe_autogen/file/emptyformat_8hxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:155: WARNING: unknown document: '../_breathe_autogen/file/h5__format_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:158: WARNING: unknown document: '../_breathe_autogen/file/h5__format_8hxx' generating indices... /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:162: WARNING: unknown document: '../_breathe_autogen/file/nc__format_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:165: WARNING: unknown document: '../_breathe_autogen/file/nc__format_8hxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:169: WARNING: unknown document: '../_breathe_autogen/file/ncxx4_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:173: WARNING: unknown document: '../_breathe_autogen/file/ncxx4_8hxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:177: WARNING: unknown document: '../_breathe_autogen/file/pnetcdf_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:180: WARNING: unknown document: '../_breathe_autogen/file/pnetcdf_8hxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:184: WARNING: unknown document: '../_breathe_autogen/file/fft__fftw_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:184: WARNING: unknown document: '../_breathe_autogen/file/fft_8hxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:193: WARNING: unknown document: '../_breathe_autogen/file/invert__laplace_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:195: WARNING: unknown document: '../_breathe_autogen/file/laplacefactory_8hxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:197: WARNING: unknown document: '../_breathe_autogen/file/laplacefactory_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:203: WARNING: unknown document: '../_breathe_autogen/file/serial__tri_8hxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:205: WARNING: unknown document: '../_breathe_autogen/file/serial__tri_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:209: WARNING: unknown document: '../_breathe_autogen/file/serial__band_8hxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:211: WARNING: unknown document: '../_breathe_autogen/file/serial__band_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:215: WARNING: unknown document: '../_breathe_autogen/file/spt_8hxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:217: WARNING: unknown document: '../_breathe_autogen/file/spt_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:221: WARNING: unknown document: '../_breathe_autogen/file/pdd_8hxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:223: WARNING: unknown document: '../_breathe_autogen/file/pdd_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:228: WARNING: unknown document: '../_breathe_autogen/file/invert__parderiv_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:232: WARNING: unknown document: '../_breathe_autogen/file/parderiv__factory_8hxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:234: WARNING: unknown document: '../_breathe_autogen/file/parderiv__factory_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:240: WARNING: unknown document: '../_breathe_autogen/file/serial_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:242: WARNING: unknown document: '../_breathe_autogen/file/serial_8hxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:246: WARNING: unknown document: '../_breathe_autogen/file/cyclic_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:248: WARNING: unknown document: '../_breathe_autogen/file/cyclic_8hxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:252: WARNING: unknown document: '../_breathe_autogen/file/lapack__routines_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:256: WARNING: unknown document: '../_breathe_autogen/file/boundary__factory_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:260: WARNING: unknown document: '../_breathe_autogen/file/boundary__region_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:265: WARNING: unknown document: '../_breathe_autogen/file/boundary__standard_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:269: WARNING: unknown document: '../_breathe_autogen/file/difops_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:269: WARNING: unknown document: '../_breathe_autogen/file/derivs_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:274: WARNING: unknown document: '../_breathe_autogen/file/interpolation_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:277: WARNING: unknown document: '../_breathe_autogen/file/mesh_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:285: WARNING: unknown document: '../_breathe_autogen/file/boutmesh_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:289: WARNING: unknown document: '../_breathe_autogen/file/boutmesh_8hxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:294: WARNING: unknown document: '../_breathe_autogen/file/gyro__average_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:296: WARNING: unknown document: '../_breathe_autogen/file/smoothing_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:299: WARNING: unknown document: '../_breathe_autogen/file/sourcex_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:305: WARNING: unknown document: '../_breathe_autogen/file/solver_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:308: WARNING: unknown document: '../_breathe_autogen/file/solverfactory_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:311: WARNING: unknown document: '../_breathe_autogen/file/solverfactory_8hxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:317: WARNING: unknown document: '../_breathe_autogen/file/cvode_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:321: WARNING: unknown document: '../_breathe_autogen/file/cvode_8hxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:325: WARNING: unknown document: '../_breathe_autogen/file/ida_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:329: WARNING: unknown document: '../_breathe_autogen/file/ida_8hxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:333: WARNING: unknown document: '../_breathe_autogen/file/petsc_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:336: WARNING: unknown document: '../_breathe_autogen/file/petsc_8hxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:340: WARNING: unknown document: '../_breathe_autogen/file/pvode_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:344: WARNING: unknown document: '../_breathe_autogen/file/pvode_8hxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:348: WARNING: unknown document: '../_breathe_autogen/file/boutcomm_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:350: WARNING: unknown document: '../_breathe_autogen/file/boutexception_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:353: WARNING: unknown document: '../_breathe_autogen/file/derivs_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:353: WARNING: unknown document: '../_breathe_autogen/file/difops_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:353: WARNING: undefined label: 'sec-derivatives' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:359: WARNING: unknown document: '../_breathe_autogen/file/msg__stack_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:366: WARNING: unknown document: '../_breathe_autogen/file/options_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:370: WARNING: unknown document: '../_breathe_autogen/file/optionsreader_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:372: WARNING: unknown document: '../_breathe_autogen/file/output_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:374: WARNING: unknown document: '../_breathe_autogen/file/range_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:378: WARNING: unknown document: '../_breathe_autogen/file/stencils_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:382: WARNING: unknown document: '../_breathe_autogen/file/timer_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:386: WARNING: unknown document: '../_breathe_autogen/file/utils_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:392: WARNING: unknown document: '../_breathe_autogen/file/optionparser_8hxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:394: WARNING: unknown document: '../_breathe_autogen/file/options__ini_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:396: WARNING: unknown document: '../_breathe_autogen/file/options__ini_8hxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/data_types.rst:385: WARNING: Unparseable C++ cross-reference: 'mesh:maxregionblocksize' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected end of definition. [error at 4] mesh:maxregionblocksize ----^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expecting "(" in parameters-and-qualifiers. [error at 4] mesh:maxregionblocksize ----^ If the function has a return type: Error in declarator or parameters-and-qualifiers If pointer to member declarator: Invalid C++ declaration: Expected identifier in nested name. [error at 4] mesh:maxregionblocksize ----^ If declarator-id: Invalid C++ declaration: Expected identifier in nested name. [error at 4] mesh:maxregionblocksize ----^ /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/data_types.rst:385: WARNING: Unparseable C++ cross-reference: 'BOUT.inp' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected end of definition. [error at 4] BOUT.inp ----^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expecting "(" in parameters-and-qualifiers. [error at 4] BOUT.inp ----^ If the function has a return type: Error in declarator or parameters-and-qualifiers If pointer to member declarator: Invalid C++ declaration: Expected identifier in nested name. [error at 4] BOUT.inp ----^ If declarator-id: Invalid C++ declaration: Expected identifier in nested name. [error at 4] BOUT.inp ----^ /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/file_io.rst:4: WARNING: unknown document: '../_breathe_autogen/file/griddata_8hxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/file_io.rst:4: WARNING: unknown document: '../_breathe_autogen/file/datafile_8hxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/file_io.rst:4: WARNING: unknown document: '../_breathe_autogen/file/datafile_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/file_io.rst:13: WARNING: unknown document: '../_breathe_autogen/file/dataformat_8hxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/file_io.rst:268: WARNING: Unparseable C++ cross-reference: 'restart.redistribute' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected end of definition. [error at 7] restart.redistribute -------^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expecting "(" in parameters-and-qualifiers. [error at 7] restart.redistribute -------^ If the function has a return type: Error in declarator or parameters-and-qualifiers If pointer to member declarator: Invalid C++ declaration: Expected identifier in nested name. [error at 7] restart.redistribute -------^ If declarator-id: Invalid C++ declaration: Expected identifier in nested name. [error at 7] restart.redistribute -------^ /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/mesh.rst:31: WARNING: unknown document: '../_breathe_autogen/file/bout_09_09_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/user_docs/algebraic_operators.rst:8: WARNING: unknown document: '../_breathe_autogen/file/field2d_8hxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/user_docs/algebraic_operators.rst:8: WARNING: unknown document: '../_breathe_autogen/file/field3d_8hxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/user_docs/algebraic_operators.rst:8: WARNING: unknown document: '../_breathe_autogen/file/fieldperp_8hxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/user_docs/differential_operators.rst:182: WARNING: Unparseable C++ cross-reference: 'return\n0.5*(f.p - f.m);' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected identifier in nested name, got keyword: return [error at 6] return 0.5*(f.p - f.m); ------^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expected identifier in nested name, got keyword: return [error at 6] return 0.5*(f.p - f.m); ------^ If the function has a return type: Invalid C++ declaration: Expected identifier in nested name, got keyword: return [error at 6] return 0.5*(f.p - f.m); ------^ /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/user_docs/differential_operators.rst:192: WARNING: Unparseable C++ cross-reference: '"C2"' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected identifier in nested name. [error at 0] "C2" ^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expected identifier in nested name. [error at 0] "C2" ^ If the function has a return type: Invalid C++ declaration: Expected identifier in nested name. [error at 0] "C2" ^ /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/user_docs/differential_operators.rst:196: WARNING: Unparseable C++ cross-reference: '1' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected identifier in nested name. [error at 0] 1 ^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expected identifier in nested name. [error at 0] 1 ^ If the function has a return type: Invalid C++ declaration: Expected identifier in nested name. [error at 0] 1 ^ /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/user_docs/differential_operators.rst:221: WARNING: Unparseable C++ cross-reference: 'REGISTER_DERIVATIVE(DDX_C2)()' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected end of definition. [error at 19] REGISTER_DERIVATIVE(DDX_C2)() -------------------^ If full function ref: Error when parsing function declaration. If the function has no return type: Invalid C++ declaration: Expected end of definition or ;. [error at 27] REGISTER_DERIVATIVE(DDX_C2)() ---------------------------^ If the function has a return type: Error in declarator If declarator-id with parameters-and-qualifiers: Invalid C++ declaration: Expected identifier in nested name. [error at 19] REGISTER_DERIVATIVE(DDX_C2)() -------------------^ If parenthesis in noptr-declarator: Error in declarator or parameters-and-qualifiers If pointer to member declarator: Invalid C++ declaration: Expected '::' in pointer to member (function). [error at 26] REGISTER_DERIVATIVE(DDX_C2)() --------------------------^ If declarator-id: Invalid C++ declaration: Expecting "(" in parameters-and-qualifiers. [error at 26] REGISTER_DERIVATIVE(DDX_C2)() --------------------------^ /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/user_docs/differential_operators.rst:238: WARNING: Unparseable C++ cross-reference: '"C2"' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected identifier in nested name. [error at 0] "C2" ^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expected identifier in nested name. [error at 0] "C2" ^ If the function has a return type: Invalid C++ declaration: Expected identifier in nested name. [error at 0] "C2" ^ /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/user_docs/differential_operators.rst:530: WARNING: unknown document: '../_breathe_autogen/file/fv__ops_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/user_docs/differential_operators.rst:538: WARNING: unknown document: '../_breathe_autogen/file/fv__ops_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/user_docs/differential_operators.rst:278: WARNING: Could not lex literal_block as "cpp". Highlighting skipped. /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/user_docs/installing.rst:190: WARNING: Unparseable C++ cross-reference: 'export LC_CTYPE=C.utf8' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected identifier in nested name, got keyword: export [error at 6] export LC_CTYPE=C.utf8 ------^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expected identifier in nested name, got keyword: export [error at 6] export LC_CTYPE=C.utf8 ------^ If the function has a return type: Invalid C++ declaration: Expected identifier in nested name, got keyword: export [error at 6] export LC_CTYPE=C.utf8 ------^ /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/user_docs/installing.rst:423: WARNING: Unparseable C++ cross-reference: '-DBOUT_IGNORE_CONDA_ENV=ON' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected identifier in nested name. [error at 0] -DBOUT_IGNORE_CONDA_ENV=ON ^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expected identifier in nested name. [error at 0] -DBOUT_IGNORE_CONDA_ENV=ON ^ If the function has a return type: Invalid C++ declaration: Expected identifier in nested name. [error at 0] -DBOUT_IGNORE_CONDA_ENV=ON ^ /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/user_docs/installing.rst:436: WARNING: Failed to create a cross reference. A title or caption not found: 'sec-install-bout' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/user_docs/invertable_operator.rst:30: WARNING: Unparseable C++ cross-reference: 'examples/invertable_operator' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected end of definition. [error at 8] examples/invertable_operator --------^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expecting "(" in parameters-and-qualifiers. [error at 8] examples/invertable_operator --------^ If the function has a return type: Error in declarator or parameters-and-qualifiers If pointer to member declarator: Invalid C++ declaration: Expected identifier in nested name. [error at 8] examples/invertable_operator --------^ If declarator-id: Invalid C++ declaration: Expected identifier in nested name. [error at 8] examples/invertable_operator --------^ /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/user_docs/invertable_operator.rst:98: WARNING: Unparseable C++ cross-reference: '-invertable' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected identifier in nested name. [error at 0] -invertable ^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expected identifier in nested name. [error at 0] -invertable ^ If the function has a return type: Invalid C++ declaration: Expected identifier in nested name. [error at 0] -invertable ^ /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/user_docs/invertable_operator.rst:98: WARNING: Unparseable C++ cross-reference: '-ksp_type' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected identifier in nested name. [error at 0] -ksp_type ^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expected identifier in nested name. [error at 0] -ksp_type ^ If the function has a return type: Invalid C++ declaration: Expected identifier in nested name. [error at 0] -ksp_type ^ /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/user_docs/invertable_operator.rst:98: WARNING: Unparseable C++ cross-reference: '-invertable_ksp_type' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected identifier in nested name. [error at 0] -invertable_ksp_type ^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expected identifier in nested name. [error at 0] -invertable_ksp_type ^ If the function has a return type: Invalid C++ declaration: Expected identifier in nested name. [error at 0] -invertable_ksp_type ^ /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/user_docs/laplacian.rst:186: WARNING: unknown document: '../_breathe_autogen/file/invert__laplace_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/user_docs/nonlocal.rst:117: WARNING: undefined label: 'tab-snb-options' /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/user_docs/output_and_post.rst:659: WARNING: Unparseable C++ cross-reference: '"zzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzz"' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected identifier in nested name. [error at 0] "zzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzz" ^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expected identifier in nested name. [error at 0] "zzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzz" ^ If the function has a return type: Invalid C++ declaration: Expected identifier in nested name. [error at 0] "zzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzz" ^ /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/user_docs/output_and_post.rst:587: WARNING: Could not lex literal_block as "mathematica". Highlighting skipped. /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/user_docs/running_bout.rst:119: WARNING: Unparseable C++ cross-reference: 'https://xbout.readthedocs.io/en/latest' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected end of definition. [error at 5] https://xbout.readthedocs.io/en/latest -----^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expecting "(" in parameters-and-qualifiers. [error at 5] https://xbout.readthedocs.io/en/latest -----^ If the function has a return type: Error in declarator or parameters-and-qualifiers If pointer to member declarator: Invalid C++ declaration: Expected identifier in nested name. [error at 5] https://xbout.readthedocs.io/en/latest -----^ If declarator-id: Invalid C++ declaration: Expected identifier in nested name. [error at 5] https://xbout.readthedocs.io/en/latest -----^ /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/user_docs/running_bout.rst:464: WARNING: Unparseable C++ cross-reference: 'https://en.wikipedia.org/wiki/Universally_unique_identifier' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected end of definition. [error at 5] https://en.wikipedia.org/wiki/Universally_unique_identifier -----^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expecting "(" in parameters-and-qualifiers. [error at 5] https://en.wikipedia.org/wiki/Universally_unique_identifier -----^ If the function has a return type: Error in declarator or parameters-and-qualifiers If pointer to member declarator: Invalid C++ declaration: Expected identifier in nested name. [error at 5] https://en.wikipedia.org/wiki/Universally_unique_identifier -----^ If declarator-id: Invalid C++ declaration: Expected identifier in nested name. [error at 5] https://en.wikipedia.org/wiki/Universally_unique_identifier -----^ /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/user_docs/running_bout.rst:537: WARNING: Unparseable C++ cross-reference: 'https://xbout.readthedocs.io/en/latest' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected end of definition. [error at 5] https://xbout.readthedocs.io/en/latest -----^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expecting "(" in parameters-and-qualifiers. [error at 5] https://xbout.readthedocs.io/en/latest -----^ If the function has a return type: Error in declarator or parameters-and-qualifiers If pointer to member declarator: Invalid C++ declaration: Expected identifier in nested name. [error at 5] https://xbout.readthedocs.io/en/latest -----^ If declarator-id: Invalid C++ declaration: Expected identifier in nested name. [error at 5] https://xbout.readthedocs.io/en/latest -----^ /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/user_docs/running_bout.rst:537: WARNING: Unparseable C++ cross-reference: 'https://xbout.readthedocs.io/en/latest/xbout.html#xbout.boutdataset.BoutDatasetAccessor.to_restart' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected end of definition. [error at 5] https://xbout.readthedocs.io/en/latest/xbout.html#xbout.boutdataset.BoutDatasetAccessor.to_restart -----^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expecting "(" in parameters-and-qualifiers. [error at 5] https://xbout.readthedocs.io/en/latest/xbout.html#xbout.boutdataset.BoutDatasetAccessor.to_restart -----^ If the function has a return type: Error in declarator or parameters-and-qualifiers If pointer to member declarator: Invalid C++ declaration: Expected identifier in nested name. [error at 5] https://xbout.readthedocs.io/en/latest/xbout.html#xbout.boutdataset.BoutDatasetAccessor.to_restart -----^ If declarator-id: Invalid C++ declaration: Expected identifier in nested name. [error at 5] https://xbout.readthedocs.io/en/latest/xbout.html#xbout.boutdataset.BoutDatasetAccessor.to_restart -----^ /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/user_docs/time_integration.rst:366: WARNING: Unparseable C++ cross-reference: 'predictor = false' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected end of definition. [error at 10] predictor = false ----------^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expecting "(" in parameters-and-qualifiers. [error at 10] predictor = false ----------^ If the function has a return type: Error in declarator or parameters-and-qualifiers If pointer to member declarator: Invalid C++ declaration: Expected identifier in nested name. [error at 10] predictor = false ----------^ If declarator-id: Invalid C++ declaration: Expected identifier in nested name. [error at 10] predictor = false ----------^ /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/user_docs/time_integration.rst:960: WARNING: unknown document: '../_breathe_autogen/file/bout_09_09_8cxx' genindex py-modindex done writing additional pages... search done copying images... [ 4%] figs/layout1.png copying images... [ 8%] figs/layout2.png copying images... [ 13%] figs/memory.png copying images... [ 17%] figs/fluid_norm_mc.png copying images... [ 21%] figs/diffStencils.png copying images... [ 26%] figs/topology_cross_section.png copying images... [ 30%] figs/topology_schematic.png copying images... [ 34%] figs/boutmesh-comms.png copying images... [ 39%] figs/grid_gen.png copying images... [ 43%] figs/zoidberg/elliptic_grid.png copying images... [ 47%] figs/zoidberg/poincare.png copying images... [ 52%] figs/5PointStencilMesh.png copying images... [ 56%] figs/5PointStencilMeshWithStencil.png copying images... [ 60%] figs/5PointStencilMatrix.png copying images... [ 65%] figs/5PointStencilGlobalIndices.png copying images... [ 69%] figs/par_laplace.png copying images... [ 73%] figs/snb-sinusoidal.png copying images... [ 78%] figs/snb-step.png copying images... [ 82%] figs/interchange_inst_test.png copying images... [ 86%] figs/sod_result.png copying images... [ 91%] figs/folder_tree.png copying images... [ 95%] figs/stagLocations.png copying images... [100%] figs/init_balloon.png copying static files... done copying extra files... done dumping search index in English (code: en)... done dumping object inventory... done build succeeded, 164 warnings. The HTML pages are in html. Documentation available in file:///builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/html/index.html make: Leaving directory '/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual' + '[' mpich = mpich ']' + . /etc/profile.d/modules.sh ++ '[' -n /bin/sh ']' ++ '[' sh = sh ']' ++ shell=sh ++ '[' -f /usr/share/Modules/init/sh ']' ++ . /usr/share/Modules/init/sh +++ unset _mlshdbg +++ '[' 0 = 1 ']' +++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD' +++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD' +++ unset _mlre _mlIFS +++ '[' -n x ']' +++ _mlIFS=' ' +++ IFS=' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' ++++ eval 'echo ${LD_LIBRARY_PATH+x}' +++++ echo x +++ '[' -n x ']' ++++ eval 'echo ${LD_LIBRARY_PATH}' +++++ echo /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/lib +++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/lib'\'' ' +++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH ++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}' +++++ echo +++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_PRELOAD = LD_PRELOAD ']' +++ '[' LD_PRELOAD = LD_PRELOAD ']' ++++ eval 'echo ${LD_PRELOAD+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_PRELOAD ++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}' +++++ echo +++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' +++ '[' -n '__MODULES_QUAR_LD_LIBRARY_PATH='\''/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']' +++ _mlre='eval __MODULES_QUAR_LD_LIBRARY_PATH='\''/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 ' ++++ eval '__MODULES_QUAR_LD_LIBRARY_PATH='\''/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/lib'\''' 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++++ __MODULES_QUAR_LD_LIBRARY_PATH=/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/lib +++++ LD_LIBRARY_PATH= +++++ LD_PRELOAD= +++++ __MODULES_QUARANTINE_SET=1 +++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++ _mlcode='_module_raw() { eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")"; _mlstatus=$?; return $_mlstatus; }; module() { local _mlredir=0; if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then _mlredir=0; elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then _mlredir=1; fi; fi; case " $@ " in *'\'' --no-redirect '\''*) _mlredir=0 ;; *'\'' --redirect '\''*) _mlredir=1 ;; esac; if [ $_mlredir -eq 0 ]; then _module_raw "$@"; else _module_raw "$@" 2>&1; fi; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; unset __MODULES_AUTOINIT_INPROGRESS; MODULESHOME=/usr/share/Modules; export MODULESHOME; test 0;' +++ _mlret=0 +++ '[' -n x ']' +++ IFS=' ' +++ unset _mlIFS +++ unset _mlre _mlv _mlrv +++ '[' 0 -eq 0 ']' +++ eval '_module_raw() { eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")"; _mlstatus=$?; return $_mlstatus; }; module() { local _mlredir=0; if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then _mlredir=0; elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then _mlredir=1; fi; fi; case " $@ " in *'\'' --no-redirect '\''*) _mlredir=0 ;; *'\'' --redirect '\''*) _mlredir=1 ;; esac; if [ $_mlredir -eq 0 ]; then _module_raw "$@"; else _module_raw "$@" 2>&1; fi; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; unset __MODULES_AUTOINIT_INPROGRESS; MODULESHOME=/usr/share/Modules; export MODULESHOME; test 0;' ++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl ++++ export MODULES_CMD ++++ unset __MODULES_AUTOINIT_INPROGRESS ++++ MODULESHOME=/usr/share/Modules ++++ export MODULESHOME ++++ test 0 +++ '[' /bin/sh '!=' '' ']' +++ export -f _module_raw +++ export -f module ++++ type -t ml +++ '[' function = function ']' +++ export -f ml +++ unset _mlcode _mlret +++ '[' -n '' ']' + module unload mpi/mpich-x86_64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw unload mpi/mpich-x86_64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh unload mpi/mpich-x86_64 + eval 'LD_LIBRARY_PATH=/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/lib; export LD_LIBRARY_PATH; unset MPI_COMPILER; MANPATH=/usr/share/man:; export MANPATH; unset MPI_INCLUDE; unset MPI_MAN; unset MPI_PYTHON_SITEARCH; unset _LMFILES_; unset LOADEDMODULES; PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH; unset MPI_PYTHON3_SITEARCH; unset MPI_FORTRAN_MOD_DIR; unset MPI_HOME; unset __MODULES_LMCONFLICT; __MODULES_SHARE_MANPATH=:1; export __MODULES_SHARE_MANPATH; unset MPI_SYSCONFIG; unset MPI_SUFFIX; __MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH; unset MPI_PYTHON2_SITEARCH; unset MPI_LIB; PATH=/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH; unset MPI_BIN; test 0;' ~/build/BUILD/BOUT++-v4.4.2 ~/build/BUILD/BOUT++-v4.4.2/build_openmpi ~/build/BUILD/BOUT++-v4.4.2 ++ LD_LIBRARY_PATH=/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/lib ++ export LD_LIBRARY_PATH ++ unset MPI_COMPILER ++ MANPATH=/usr/share/man: ++ export MANPATH ++ unset MPI_INCLUDE ++ unset MPI_MAN ++ unset MPI_PYTHON_SITEARCH ++ unset _LMFILES_ ++ unset LOADEDMODULES ++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_FORTRAN_MOD_DIR ++ unset MPI_HOME ++ unset __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:1 ++ export __MODULES_SHARE_MANPATH ++ unset MPI_SYSCONFIG ++ unset MPI_SUFFIX ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ unset MPI_PYTHON2_SITEARCH ++ unset MPI_LIB ++ PATH=/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ unset MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + popd + for mpi in mpich openmpi + pushd build_openmpi + '[' openmpi = mpich ']' + '[' openmpi = openmpi ']' + . /etc/profile.d/modules.sh ++ '[' -n /bin/sh ']' ++ '[' sh = sh ']' ++ shell=sh ++ '[' -f /usr/share/Modules/init/sh ']' ++ . /usr/share/Modules/init/sh +++ unset _mlshdbg +++ '[' 0 = 1 ']' +++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD' +++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD' +++ unset _mlre _mlIFS +++ '[' -n x ']' +++ _mlIFS=' ' +++ IFS=' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' ++++ eval 'echo ${LD_LIBRARY_PATH+x}' +++++ echo x +++ '[' -n x ']' ++++ eval 'echo ${LD_LIBRARY_PATH}' +++++ echo /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/lib +++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/lib'\'' ' +++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH ++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}' +++++ echo +++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_PRELOAD = LD_PRELOAD ']' +++ '[' LD_PRELOAD = LD_PRELOAD ']' ++++ eval 'echo ${LD_PRELOAD+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_PRELOAD ++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}' +++++ echo +++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' +++ '[' -n '__MODULES_QUAR_LD_LIBRARY_PATH='\''/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']' +++ _mlre='eval __MODULES_QUAR_LD_LIBRARY_PATH='\''/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 ' ++++ eval '__MODULES_QUAR_LD_LIBRARY_PATH='\''/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/lib'\''' 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++++ __MODULES_QUAR_LD_LIBRARY_PATH=/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/lib +++++ LD_LIBRARY_PATH= +++++ LD_PRELOAD= +++++ __MODULES_QUARANTINE_SET=1 +++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++ _mlcode='_module_raw() { eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")"; _mlstatus=$?; return $_mlstatus; }; module() { local _mlredir=0; if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then _mlredir=0; elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then _mlredir=1; fi; fi; case " $@ " in *'\'' --no-redirect '\''*) _mlredir=0 ;; *'\'' --redirect '\''*) _mlredir=1 ;; esac; if [ $_mlredir -eq 0 ]; then _module_raw "$@"; else _module_raw "$@" 2>&1; fi; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; unset __MODULES_AUTOINIT_INPROGRESS; MODULESHOME=/usr/share/Modules; export MODULESHOME; LOADEDMODULES=; export LOADEDMODULES; test 0;' +++ _mlret=0 +++ '[' -n x ']' +++ IFS=' ' +++ unset _mlIFS +++ unset _mlre _mlv _mlrv +++ '[' 0 -eq 0 ']' +++ eval '_module_raw() { eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")"; _mlstatus=$?; return $_mlstatus; }; module() { local _mlredir=0; if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then _mlredir=0; elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then _mlredir=1; fi; fi; case " $@ " in *'\'' --no-redirect '\''*) _mlredir=0 ;; *'\'' --redirect '\''*) _mlredir=1 ;; esac; if [ $_mlredir -eq 0 ]; then _module_raw "$@"; else _module_raw "$@" 2>&1; fi; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; unset __MODULES_AUTOINIT_INPROGRESS; MODULESHOME=/usr/share/Modules; export MODULESHOME; LOADEDMODULES=; export LOADEDMODULES; test 0;' ++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl ++++ export MODULES_CMD ++++ unset __MODULES_AUTOINIT_INPROGRESS ++++ MODULESHOME=/usr/share/Modules ++++ export MODULESHOME ++++ LOADEDMODULES= ++++ export LOADEDMODULES ++++ test 0 +++ '[' /bin/sh '!=' '' ']' +++ export -f _module_raw +++ export -f module ++++ type -t ml +++ '[' function = function ']' +++ export -f ml +++ unset _mlcode _mlret +++ '[' -n '' ']' + module load mpi/openmpi-x86_64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw load mpi/openmpi-x86_64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh load mpi/openmpi-x86_64 + eval 'MPI_COMPILER=openmpi-x86_64; export MPI_COMPILER; LD_LIBRARY_PATH=/usr/lib64/openmpi/lib:/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/lib; export LD_LIBRARY_PATH; MANPATH=/usr/share/man/openmpi-x86_64:/usr/share/man:; export MANPATH; MPI_INCLUDE=/usr/include/openmpi-x86_64; export MPI_INCLUDE; MPI_MAN=/usr/share/man/openmpi-x86_64; export MPI_MAN; _LMFILES_=/usr/share/modulefiles/mpi/openmpi-x86_64; export _LMFILES_; LOADEDMODULES=mpi/openmpi-x86_64; export LOADEDMODULES; PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH; MPI_PYTHON3_SITEARCH=/usr/lib64/python3.11/site-packages/openmpi; export MPI_PYTHON3_SITEARCH; MPI_HOME=/usr/lib64/openmpi; export MPI_HOME; MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi; export MPI_FORTRAN_MOD_DIR; __MODULES_LMALTNAME=mpi/openmpi-x86_64\&as\|mpi/default\&as\|mpi/latest; export __MODULES_LMALTNAME; __MODULES_LMCONFLICT=mpi/openmpi-x86_64\&mpi; export __MODULES_LMCONFLICT; __MODULES_SHARE_MANPATH=:2; export __MODULES_SHARE_MANPATH; MPI_SUFFIX=_openmpi; export MPI_SUFFIX; MPI_SYSCONFIG=/etc/openmpi-x86_64; export MPI_SYSCONFIG; __MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH; MPI_LIB=/usr/lib64/openmpi/lib; export MPI_LIB; PATH=/usr/lib64/openmpi/bin:/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH; MPI_BIN=/usr/lib64/openmpi/bin; export MPI_BIN; test 0;' ++ MPI_COMPILER=openmpi-x86_64 ++ export MPI_COMPILER ++ LD_LIBRARY_PATH=/usr/lib64/openmpi/lib:/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/lib ++ export LD_LIBRARY_PATH ++ MANPATH=/usr/share/man/openmpi-x86_64:/usr/share/man: ++ export MANPATH ++ MPI_INCLUDE=/usr/include/openmpi-x86_64 ++ export MPI_INCLUDE ++ MPI_MAN=/usr/share/man/openmpi-x86_64 ++ export MPI_MAN ++ _LMFILES_=/usr/share/modulefiles/mpi/openmpi-x86_64 ++ export _LMFILES_ ++ LOADEDMODULES=mpi/openmpi-x86_64 ++ export LOADEDMODULES ++ PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.11/site-packages/openmpi ++ export MPI_PYTHON3_SITEARCH ++ MPI_HOME=/usr/lib64/openmpi ++ export MPI_HOME ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi ++ export MPI_FORTRAN_MOD_DIR ++ __MODULES_LMALTNAME='mpi/openmpi-x86_64&as|mpi/default&as|mpi/latest' ++ export __MODULES_LMALTNAME ++ __MODULES_LMCONFLICT='mpi/openmpi-x86_64&mpi' ++ export __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:2 ++ export __MODULES_SHARE_MANPATH ++ MPI_SUFFIX=_openmpi ++ export MPI_SUFFIX ++ MPI_SYSCONFIG=/etc/openmpi-x86_64 ++ export MPI_SYSCONFIG ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ MPI_LIB=/usr/lib64/openmpi/lib ++ export MPI_LIB ++ PATH=/usr/lib64/openmpi/bin:/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ MPI_BIN=/usr/lib64/openmpi/bin ++ export MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + export OMPI_MCA_rmaps_base_oversubscribe=1 + OMPI_MCA_rmaps_base_oversubscribe=1 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=mpicc + export CC + CXX=mpicxx + export CXX + '[' '-flto=auto -ffat-lto-objectsx' '!=' x ']' ++ find . -type f -name configure -print + for file in $(find . -type f -name configure -print) + /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\) = /__attribute__ ((used)) char (*f) () = /g' ./tools/pdb2idl/configure + diff -u ./tools/pdb2idl/configure.backup ./tools/pdb2idl/configure + mv ./tools/pdb2idl/configure.backup ./tools/pdb2idl/configure + /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\);/__attribute__ ((used)) char (*f) ();/g' ./tools/pdb2idl/configure + diff -u ./tools/pdb2idl/configure.backup ./tools/pdb2idl/configure + mv ./tools/pdb2idl/configure.backup ./tools/pdb2idl/configure + /usr/bin/sed -r --in-place=.backup 's/^char \$2 \(\);/__attribute__ ((used)) char \$2 ();/g' ./tools/pdb2idl/configure + diff -u ./tools/pdb2idl/configure.backup ./tools/pdb2idl/configure + mv ./tools/pdb2idl/configure.backup ./tools/pdb2idl/configure + /usr/bin/sed --in-place=.backup '1{$!N;$!N};$!N;s/int x = 1;\nint y = 0;\nint z;\nint nan;/volatile int x = 1; volatile int y = 0; volatile int z, nan;/;P;D' ./tools/pdb2idl/configure + diff -u ./tools/pdb2idl/configure.backup ./tools/pdb2idl/configure + mv ./tools/pdb2idl/configure.backup ./tools/pdb2idl/configure + /usr/bin/sed --in-place=.backup 's#^lt_cv_sys_global_symbol_to_cdecl=.*#lt_cv_sys_global_symbol_to_cdecl="sed -n -e '\''s/^T .* \\(.*\\)$/extern int \\1();/p'\'' -e '\''s/^$symcode* .* \\(.*\\)$/extern char \\1;/p'\''"#' ./tools/pdb2idl/configure + diff -u ./tools/pdb2idl/configure.backup ./tools/pdb2idl/configure + mv ./tools/pdb2idl/configure.backup ./tools/pdb2idl/configure + for file in $(find . -type f -name configure -print) + /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\) = /__attribute__ ((used)) char (*f) () = /g' ./configure + diff -u ./configure.backup ./configure + mv ./configure.backup ./configure + /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\);/__attribute__ ((used)) char (*f) ();/g' ./configure + diff -u ./configure.backup ./configure + mv ./configure.backup ./configure + /usr/bin/sed -r --in-place=.backup 's/^char \$2 \(\);/__attribute__ ((used)) char \$2 ();/g' ./configure + diff -u ./configure.backup ./configure --- ./configure.backup 2023-04-04 13:40:05.050067820 +0000 +++ ./configure 2023-04-04 13:48:10.728723210 +0000 @@ -1864,7 +1864,7 @@ #ifdef __cplusplus extern "C" #endif -char $2 (); +__attribute__ ((used)) char $2 (); /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ + /usr/bin/sed --in-place=.backup '1{$!N;$!N};$!N;s/int x = 1;\nint y = 0;\nint z;\nint nan;/volatile int x = 1; volatile int y = 0; volatile int z, nan;/;P;D' ./configure + diff -u ./configure.backup ./configure + mv ./configure.backup ./configure + /usr/bin/sed --in-place=.backup 's#^lt_cv_sys_global_symbol_to_cdecl=.*#lt_cv_sys_global_symbol_to_cdecl="sed -n -e '\''s/^T .* \\(.*\\)$/extern int \\1();/p'\'' -e '\''s/^$symcode* .* \\(.*\\)$/extern char \\1;/p'\''"#' ./configure + diff -u ./configure.backup ./configure + mv ./configure.backup ./configure + '[' 1 = 1 ']' +++ dirname ./configure ++ find . -name config.guess -o -name config.sub + for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub) ++ basename ./build-aux/config.guess + '[' -f /usr/lib/rpm/redhat/config.guess ']' + /usr/bin/rm -f ./build-aux/config.guess ++ basename ./build-aux/config.guess + /usr/bin/cp -fv /usr/lib/rpm/redhat/config.guess ./build-aux/config.guess '/usr/lib/rpm/redhat/config.guess' -> './build-aux/config.guess' + for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub) ++ basename ./build-aux/config.sub + '[' -f /usr/lib/rpm/redhat/config.sub ']' + /usr/bin/rm -f ./build-aux/config.sub ++ basename ./build-aux/config.sub + /usr/bin/cp -fv /usr/lib/rpm/redhat/config.sub ./build-aux/config.sub '/usr/lib/rpm/redhat/config.sub' -> './build-aux/config.sub' + '[' 1 = 1 ']' + '[' x '!=' 'x-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' ']' ++ find . -name ltmain.sh + for i in $(find . -name ltmain.sh) + /usr/bin/sed -i.backup -e 's~compiler_flags=$~compiler_flags="-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld"~' ./build-aux/ltmain.sh ++ grep -q runstatedir=DIR ./configure ++ echo --runstatedir=/run + ./configure --build=x86_64-redhat-linux-gnu --host=x86_64-redhat-linux-gnu --program-prefix= --disable-dependency-tracking --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib64 --libexecdir=/usr/libexec --localstatedir=/var --runstatedir=/run --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info --with-netcdf --with-hdf5 --enable-shared --with-system-mpark --libdir=/usr/lib64/openmpi/lib --bindir=/usr/lib64/openmpi/bin --sbindir=/usr/lib64/openmpi/sbin --includedir=/usr/include/openmpi-x86_64 --datarootdir=/usr/share --with-petsc --with-sundials configure: WARNING: unrecognized options: --disable-dependency-tracking checking for x86_64-redhat-linux-gnu-mpic++... no checking for x86_64-redhat-linux-gnu-mpicxx... no checking for x86_64-redhat-linux-gnu-mpiCC... no checking for x86_64-redhat-linux-gnu-sxmpic++... no checking for x86_64-redhat-linux-gnu-hcp... no checking for x86_64-redhat-linux-gnu-mpxlC_r... no checking for x86_64-redhat-linux-gnu-mpxlC... no checking for x86_64-redhat-linux-gnu-mpixlcxx_r... no checking for x86_64-redhat-linux-gnu-mpixlcxx... no checking for x86_64-redhat-linux-gnu-mpg++... no checking for x86_64-redhat-linux-gnu-mpc++... no checking for x86_64-redhat-linux-gnu-mpCC... no checking for x86_64-redhat-linux-gnu-cmpic++... no checking for x86_64-redhat-linux-gnu-mpiFCC... no checking for x86_64-redhat-linux-gnu-CCicpc... no checking for x86_64-redhat-linux-gnu-pgCC... no checking for x86_64-redhat-linux-gnu-pathCC... no checking for x86_64-redhat-linux-gnu-sxc++... no checking for x86_64-redhat-linux-gnu-xlC_r... no checking for x86_64-redhat-linux-gnu-xlC... no checking for x86_64-redhat-linux-gnu-bgxlC_r... no checking for x86_64-redhat-linux-gnu-bgxlC... no checking for x86_64-redhat-linux-gnu-openCC... no checking for x86_64-redhat-linux-gnu-sunCC... no checking for x86_64-redhat-linux-gnu-crayCC... no checking for x86_64-redhat-linux-gnu-aCC... no checking for x86_64-redhat-linux-gnu-CC... no checking for x86_64-redhat-linux-gnu-g++... no checking for x86_64-redhat-linux-gnu-c++... no checking for x86_64-redhat-linux-gnu-gpp... no checking for x86_64-redhat-linux-gnu-cxx... no checking for x86_64-redhat-linux-gnu-cc++... no checking for x86_64-redhat-linux-gnu-cl.exe... no checking for x86_64-redhat-linux-gnu-FCC... no checking for x86_64-redhat-linux-gnu-KCC... no checking for x86_64-redhat-linux-gnu-RCC... no checking for mpic++... mpic++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C++... yes checking whether mpic++ accepts -g... yes checking for mpic++ option to enable C++11 features... none needed checking for function MPI_Init... yes checking for mpi.h... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking whether ln -s works... yes checking whether make sets $(MAKE)... yes checking for a BSD-compatible install... /usr/bin/install -c checking for gmake... gmake checking for x86_64-redhat-linux-gnu-ranlib... no checking for ranlib... ranlib checking whether mpic++ supports C++11 features by default... yes checking for sqrt in -lm... yes checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for malloc.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for strings.h... (cached) yes checking build system type... x86_64-redhat-linux-gnu checking host system type... x86_64-redhat-linux-gnu checking for GNU libc compatible malloc... yes checking for GNU libc compatible realloc... yes checking for vprintf... yes checking does C++ compiler support __PRETTY_FUNCTION__... yes checking for a sed that does not truncate output... /usr/bin/sed checking whether to build with code coverage support... no checking whether C++ compiler accepts -Werror=unknown-warning-option... no checking whether C++ compiler accepts -we10006,10148... no checking whether C++ compiler accepts -Wall... yes checking whether C++ compiler accepts -Wextra... yes checking whether C++ compiler accepts -Wnull-dereference... yes checking whether C++ compiler accepts -Wno-cast-function-type... yes configure: Enabling default optimisations checking whether C++ compiler accepts -O2... yes configure: Run-time checking enabled configure: -> Level 2 (Basic checking + stack tracing) configure: Segmentation fault handling enabled configure: Output coloring enabled configure: Field name tracking disabled configure: Signaling floating point exceptions disabled checking for addr2line... yes checking for popen... yes checking for backtrace... yes checking for execinfo.h... yes checking for dlfcn.h... yes checking for library containing dladdr... none required configure: Native backtrace enabled ./configure: line 7057: git: command not found checking for fftw-wisdom... /usr/bin/fftw-wisdom checking for fftw3.h... yes checking for libfftw3... yes checking for ncxx4-config... /usr/bin/ncxx4-config configure: -> NetCDF-4 support enabled configure: Parallel-NetCDF support disabled checking for gawk... gawk checking for x86_64-redhat-linux-gnu-gcc... mpicc checking whether the compiler supports GNU C... yes checking whether mpicc accepts -g... yes checking for mpicc option to enable C11 features... none needed checking for h5cc... /usr/bin/h5cc checking for HDF5 type... serial checking for HDF5 libraries... yes (version 1.12.1) checking for hdf5.h... yes checking for H5Fcreate in -lhdf5... yes checking for main in -lhdf5_hl... yes configure: Found HDF5 checking how to run the C++ preprocessor... mpic++ -E configure: Parallel HDF5 support disabled configure: Supported file formats: netCDF HDF5 checking for libblas... no checking for liblapack... no checking for x86_64-redhat-linux-gnu-pkg-config... /usr/bin/x86_64-redhat-linux-gnu-pkg-config checking pkg-config is at least version 0.9.0... yes configure: Using PETSC_DIR=, PETSC_ARCH= checking for //conf... no checking for //lib/petsc/conf... no checking for PETSc >= 3.4.0 ... yes checking PETSc has SUNDIALS support... no checking for SUNDIALS config header... yes checking for SUNDIALS minor version... ok configure: Searching for SUNDIALS IDA library checking for sundials-config... no checking if we can compile with SUNDIALS IDA... configure: WARNING: No sundials-config available, no path given, will try compiling with IDA anyway yes configure: Using SUNDIALS IDA solver configure: => IDA solver enabled configure: Searching for SUNDIALS CVODE library checking for sundials-config... (cached) no configure: WARNING: No sundials-config available, no path given, will try compiling with CVODE anyway checking if we can compile with SUNDIALS CVODE... yes configure: Using SUNDIALS CVODE solver configure: => CVODE solver enabled configure: Searching for SUNDIALS ARKODE library checking for sundials-config... (cached) no checking if we can compile with SUNDIALS ARKODE... configure: WARNING: No sundials-config available, no path given, will try compiling with ARKODE anyway yes configure: Using SUNDIALS ARKODE solver configure: => ARKODE solver enabled configure: Scorep support disabled checking for mpark.variant... yes checking for uuid/uuid.h... no configure: PVODE being built without OpenMP support configure: Building PVODE configure: Successfully built PVODE configure: Installing PVODE into BOUT++ sourcetree checking whether NLS is requested... yes checking for msgfmt... /usr/bin/msgfmt checking for gmsgfmt... /usr/bin/msgfmt checking for xgettext... /usr/bin/xgettext checking for msgmerge... /usr/bin/msgmerge checking for ld used by mpicc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for shared library run path origin... done checking 32-bit host C ABI... no checking for ELF binary format... yes checking for the common suffixes of directories in the library search path... lib,lib,lib64 checking for CFPreferencesCopyAppValue... no checking for CFLocaleCopyPreferredLanguages... no checking for GNU gettext in libc... yes checking whether to use NLS... yes checking where the gettext function comes from... libc configure: Enabling language support with gettext gmake: Entering directory '/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/locale' Building language: de Building language: es Building language: fr Building language: zh_CN Building language: zh_TW gmake: Leaving directory '/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/locale' configure: creating ./config.status config.status: creating make.config config.status: executing po-directories commands configure: WARNING: unrecognized options: --disable-dependency-tracking configure: creating ./config.status config.status: creating make.config config.status: creating bin/bout-config config.status: creating src/makefile config.status: creating tools/pylib/boutconfig/__init__.py config.status: executing po-directories commands configure: WARNING: unrecognized options: --disable-dependency-tracking configure: ------------------------- configure: Configuration summary configure: ------------------------- configure: PETSc support : yes (has SUNDIALS: no) configure: SLEPc support : no configure: IDA support : yes configure: CVODE support : yes configure: ARKODE support : yes configure: FFTW support : yes configure: NetCDF support : yes configure: Parallel-NetCDF support : no configure: HDF5 support : yes (parallel: no) configure: MUMPS support : no configure: Lapack support : no configure: Scorep support : no configure: OpenMP support : no (schedule: ) configure: Natural language support: yes (path: ${datarootdir}/locale) configure: System UUID generator : no configure: configure: ------------------------------- configure: Data analysis configuration configure: ------------------------------- configure: configure: === IDL === configure: configure: Make sure that the tools/idllib directory is in your IDL_PATH configure: e.g. by adding to your ~/.bashrc file configure: configure: export IDL_PATH=+/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tools/idllib:'':$IDL_PATH configure: configure: === Python === configure: configure: Make sure that the tools/pylib directory is in your PYTHONPATH configure: e.g. by adding to your ~/.bashrc file configure: configure: export PYTHONPATH=/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tools/pylib/:$PYTHONPATH configure: configure: *** Now run 'gmake' to compile BOUT++ *** + sed -e 's| -L/usr/lib64 | |g' -e 's| -Wl,--as-needed | |g' -i make.config + sed -e 's|-lblas|-lflexiblas|g' -e 's|-llapack|-lflexiblas|g' -i make.config + sed -e 's/\\#/#/g' -i make.config + cat make.config # configuration file for BOUT++ # September 2008: Converted to use autoconf. Can be manually edited # for the (very) rare occasions when autoconf fails # extra compilation flags: # -DCHECK=lvl Enables a host of additional checks on each operation # such as uninitialised data if lvl is > 0. -DCHECK=3 # enables all tests, while -DCHECK=0 disables them. # Helps when debugging # -DTRACK Keeps track of variable names. # Enables more useful error messages # for SSE2: -msse2 -mfpmath=sse # # This must also specify one or more file formats # -DPDBF PDB format (need to include pdb_format.cxx) # -DNCDF NetCDF format (nc_format.cxx) # PETSc config variables need to be first, else they may clobber other # options (e.g. CXX, CXXFLAGS) PETSC_DIR ?= PETSC_ARCH ?= SLEPC_DIR ?= SLEPC_ARCH ?= # These lines can be replaced in "make install" to point to install directories # They are used in the CXXFLAGS variable below rather than hard-coding the directories BOUT_INCLUDE_PATH=$(BOUT_TOP)/include BOUT_LIB_PATH=$(BOUT_TOP)/lib BOUT_CONFIG_FILE=$(BOUT_TOP)/make.config SONAME=4.4.0 prefix = /usr exec_prefix = /usr datarootdir = /usr/share # This path to the locale (.mo) files is hard-wired into bout++.cxx at compile time BOUT_LOCALE_PATH=${datarootdir}/locale # Created this variable so that a user won't overwrite the CXXFLAGS variable # on the command line, just add to this one BOUT_FLAGS = $(CXXFLAGS) -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DHAS_PRETTY_FUNCTION -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -DSIGHANDLE -DLOGCOLOR -DBOUT_VERSION_STRING="\"4.4.2\"" -DBOUT_VERSION_DOUBLE=4.42 -DBACKTRACE -fPIC -DBOUT_HAS_FFTW -DNCDF4 -DHDF5 -DBOUT_HAS_PETSC -DBOUT_HAS_IDA -DBOUT_HAS_CVODE -DBOUT_HAS_ARKODE -DBOUT_HAS_PVODE -DBOUT_HAS_GETTEXT -DBOUT_LOCALE_PATH=$(BOUT_LOCALE_PATH) #Use := here to force a "static" evaluation of the current state of BOUT_FLAGS to #avoid infinite recursion that would arise if BOUT_FLAGS appeared on both sides of = BOUT_FLAGS := $(BOUT_FLAGS) -DBOUT_FLAGS_STRING="$(BOUT_FLAGS)" # Specify the MPI C++ compiler in CXX CXX = mpic++ CC = $(CXX) AR = ar ARFLAGS = cruU RANLIB = ranlib MKDIR = /usr/bin/mkdir -p #################################################################### # Do not need to alter anything below #################################################################### LD = $(CXX) LDFLAGS = -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes LIBS = -lm CPPFLAGS = #################################################################### # Extra (optional) source files, includes and libs # NOTE: EXTRA_SRC must include a solver (solver.cxx or ida_solver.cxx) # and a file format (nc_format.cxx or pdb_format.cxx) #################################################################### EXTRA_INCS = $(CPPFLAGS) -I/usr/include -I/usr/include -I/usr/include/openmpi-x86_64/petsc EXTRA_LIBS = $(LIBS) -lfftw3 -lnetcdf_c++4 -lnetcdf -lhdf5_hl -lhdf5 -lhdf5_hl -lsz -lz -ldl -lm -L/usr/lib64/openmpi/lib -lpetsc -lhdf5 -lsundials_ida -lsundials_nvecparallel -lsundials_cvode -lsundials_nvecparallel -lsundials_arkode -lsundials_nvecparallel -L$(BOUT_LIB_PATH) -lpvode -lpvpre PRECON_SOURCE = BOUT_VERSION = 4.4.2 #################################################################### # These are used for compiling physics modules using BOUT++ library #################################################################### # Files that are needed by configure and should be dependencies for 'all' OBJ = $(SOURCEC:%.cxx=%.o) ifndef RELEASE LIB_A = $(BOUT_LIB_PATH)/libbout++.a LIB_SO = $(BOUT_LIB_PATH)/libbout++.so LIB = $(BOUT_LIB_PATH)/libbout++.so endif MPARK_VARIANT_INCLUDE_PATH= BOUT_INCLUDE = -I$(BOUT_INCLUDE_PATH) $(CXXINCLUDE) $(EXTRA_INCS) BOUT_LIBS = -lm -L$(BOUT_LIB_PATH) -lbout++ $(EXTRA_LIBS) CHANGED = $(shell find -f $(BOUT_TOP)/include $(BOUT_TOP)/src -type f \( -name \*.cxx -or -name \*.h \) -newer $(LIB) -print 2> /dev/null) # This will set a default if no TARGET is provided TARGET ?= $(SOURCEC:%.cxx=%) #################################################################### # Definining stuff for recursive make #################################################################### # Phony targets since they are directory names .PHONY: $(DIRS) lib install libfast runtest manual sphinx doxygen ifneq ("$(TARGET)","libfast") all: $(BOUT_CONFIG_FILE) $(DIRS) $(TARGET) else all: $(BOUT_TOP)/config.status $(BOUT_CONFIG_FILE) $(DIRS) endif libfast: $(BOUT_CONFIG_FILE) $(DIRS) #################################################################### # Recursively run make through subdirs #################################################################### ifeq ("$(TARGET)" , "lib") $(DIRS): # make $@ slowly using the old method where parallel builds can cause # race conditions that @$(MAKE) -s --no-print-directory TARGET=lib -C $@ all else ifeq ("$(TARGET)","libfast") $(DIRS): # make $@ using the libfast method, where all .o files # are only created in the end @$(MAKE) -s --no-print-directory TARGET=$(TARGET) -C $@ $(TARGET) else MODULE_DIR?=$(shell pwd) $(DIRS): # MODULE_DIR: pass the module directory, where the libraries should be # created. # SUB_NAME is used for creating a library with the expected name. # first a potential trailing slash is removed, and after that the # directory name is extracted. This allows to e.g. specify a directory # as fuu/bar/ and still get an archive named bar.a # The # probably doesn't need to be escaped as everything in the # recipy is passed to the shell, even lines starting with # @$(MAKE) -s --no-print-directory MODULE_DIR=$(MODULE_DIR) SUB_NAME=$(shell f=$@ ; g=$${f%/} ; echo $${g##*/}) TARGET=sub -C $@ endif endif # Create 'lib' and 'include' incase they don't exist $(BOUT_TOP)/include $(BOUT_TOP)/lib: $(MKDIR) $@ #################################################################### # Install header files and libraries #################################################################### INSTALL = /usr/bin/install -c INSTALL_PROGRAM = ${INSTALL} INSTALL_DATA = ${INSTALL} -m 644 INSTALL_INCLUDE_PATH = $(DESTDIR)/usr/include/openmpi-x86_64/bout++/ # A list of relative paths e.g. "fr/LC_MESSAGES/libbout.mo zh_CN/LC_MESSAGES/libbout.mo" MO_FILES = $(shell cd locale; ls */LC_MESSAGES/libbout.mo) install: libfast $(PRE_INSTALL) # Pre-install commands follow. $(NORMAL_INSTALL) # Normal commands follow. $(MKDIR) $(INSTALL_INCLUDE_PATH)/{,pvode,bout/sys,bout/invert} $(MKDIR) $(DESTDIR)/{/usr/lib64/openmpi/lib,/usr/lib64/openmpi/bin,/usr/share/bout++/idllib} $(INSTALL_DATA) include/*.hxx $(INSTALL_INCLUDE_PATH) ifeq ("", "yes") $(MKDIR) $(INSTALL_INCLUDE_PATH)/mpark $(INSTALL_DATA) $(MPARK_VARIANT_INCLUDE_PATH)/mpark/*.hpp $(INSTALL_INCLUDE_PATH)/mpark endif $(INSTALL_DATA) include/pvode/*.h $(INSTALL_INCLUDE_PATH)/pvode/ $(INSTALL_DATA) include/bout/*.hxx $(INSTALL_INCLUDE_PATH)/bout/ $(INSTALL_DATA) include/bout/sys/*.hxx $(INSTALL_INCLUDE_PATH)/bout/sys/ $(INSTALL_DATA) include/bout/invert/*.hxx $(INSTALL_INCLUDE_PATH)/bout/invert/ ifneq ("x", "x") $(INSTALL_DATA) lib/libbout++.a $(DESTDIR)/usr/lib64/openmpi/lib $(INSTALL_DATA) lib/libpvode.a $(DESTDIR)/usr/lib64/openmpi/lib $(INSTALL_DATA) lib/libpvpre.a $(DESTDIR)/usr/lib64/openmpi/lib endif ifneq ("$(RM) -f $(BOUT_LIB_PATH)/libbout++.ax", "x") $(INSTALL_PROGRAM) lib/libbout++.so.$(SONAME) $(DESTDIR)/usr/lib64/openmpi/lib $(INSTALL_PROGRAM) lib/libpvode.so.* $(DESTDIR)/usr/lib64/openmpi/lib $(INSTALL_PROGRAM) lib/libpvpre.so.* $(DESTDIR)/usr/lib64/openmpi/lib rm -f $(DESTDIR)/usr/lib64/openmpi/lib/lib{bout++,pvode,pvpre}.so ln -s libbout++.so.$(SONAME) $(DESTDIR)/usr/lib64/openmpi/lib/libbout++.so ln -s libpvode.so.1.0.0 $(DESTDIR)/usr/lib64/openmpi/lib/libpvode.so ln -s libpvpre.so.1.0.0 $(DESTDIR)/usr/lib64/openmpi/lib/libpvpre.so endif $(INSTALL_PROGRAM) bin/bout-config $(DESTDIR)/usr/lib64/openmpi/bin $(INSTALL_PROGRAM) bin/bout-log-color $(DESTDIR)/usr/lib64/openmpi/bin $(INSTALL_DATA) tools/idllib/*.pro $(DESTDIR)/usr/share/bout++/idllib/ $(INSTALL_DATA) tools/idllib/README $(DESTDIR)/usr/share/bout++/idllib/ $(INSTALL_DATA) make.config $(INSTALL_INCLUDE_PATH) for mo in $(MO_FILES); do $(MKDIR) $(DESTDIR)${datarootdir}/locale/`dirname $$mo`; $(INSTALL_DATA) locale/$$mo $(DESTDIR)${datarootdir}/locale/$$mo; done $(POST_INSTALL) # Post-install commands follow. @# Modify paths in the bout-config script sed -i "s|^BOUT_INCLUDE_PATH=.*|BOUT_INCLUDE_PATH=/usr/include/openmpi-x86_64/bout++|" $(DESTDIR)/usr/lib64/openmpi/bin/bout-config sed -i "s|^BOUT_LIB_PATH=.*|BOUT_LIB_PATH=/usr/lib64/openmpi/lib|" $(DESTDIR)/usr/lib64/openmpi/bin/bout-config sed -i "s|^BOUT_CONFIG_FILE=.*|BOUT_CONFIG_FILE=/usr/share/bout++/make.config|" $(DESTDIR)/usr/lib64/openmpi/bin/bout-config sed -i "s|^idlpath=.*|idlpath=/usr/share/bout++/idllib/|" $(DESTDIR)/usr/lib64/openmpi/bin/bout-config sed -i "s|^pythonpath=.*|pythonpath=/usr/share/bout++/pylib/|" $(DESTDIR)/usr/lib64/openmpi/bin/bout-config ifeq ("", "yes") sed -i "s|^MPARK_VARIANT_INCLUDE_PATH=.*|MPARK_VARIANT_INCLUDE_PATH=/usr/include/openmpi-x86_64/bout++|" $(DESTDIR)/usr/lib64/openmpi/bin/bout-config endif @# Modify paths in the make.config file sed -i "s|^BOUT_INCLUDE_PATH=.*|BOUT_INCLUDE_PATH=/usr/include/openmpi-x86_64/bout++|" $(INSTALL_INCLUDE_PATH)/make.config sed -i "s|^BOUT_LIB_PATH=.*|BOUT_LIB_PATH=/usr/lib64/openmpi/lib|" $(INSTALL_INCLUDE_PATH)/make.config sed -i "s|^BOUT_CONFIG_FILE=.*|BOUT_CONFIG_FILE=/usr/include/openmpi-x86_64/bout++/make.config|" $(INSTALL_INCLUDE_PATH)/make.config ifeq ("", "yes") sed -i "s|^MPARK_VARIANT_INCLUDE_PATH=.*|MPARK_VARIANT_INCLUDE_PATH=/usr/include/openmpi-x86_64/bout++|" $(INSTALL_INCLUDE_PATH)/make.config endif # Set the make.config as released, so the library isn't rebuild. This way the .a file doesn't need to be preserved/installed sed -i '26 i RELEASED = yes' $(INSTALL_INCLUDE_PATH)/make.config uninstall: $(PRE_UNINSTALL) # Pre-uninstall commands follow. $(NORMAL_UNINSTALL) # Normal commands follow. $(RM) $(INSTALL_INCLUDE_PATH)/make.config $(RM) -r $(DESTDIR)/usr/share/bout++/idllib/ $(RM) $(DESTDIR)/usr/lib64/openmpi/bin/bout-config $(RM) $(DESTDIR)/usr/lib64/openmpi/bin/bout-log-color $(RM) $(DESTDIR)/usr/lib64/openmpi/lib/libbout++.a $(RM) $(DESTDIR)/usr/lib64/openmpi/lib/libpvode.a $(RM) $(DESTDIR)/usr/lib64/openmpi/lib/libpvpre.a $(RM) -r $(DESTDIR)/usr/include/openmpi-x86_64/bout++/ $(RM) $(DESTDIR)${datarootdir}/locale/*/LC_MESSAGES/libbout.mo $(POST_UNINSTALL) # Post-uninstall commands follow. #################################################################### # Builds the library with $(OBJ) which is defined from the SOURCEC variable #################################################################### # Rules for downloading submodules -include $(BOUT_TOP)/makefile.submodules ifeq ("$(TARGET)", "libfast") libfast: makefile $(BOUT_CONFIG_FILE) $(BOUT_TOP)/include $(OBJ) $(DIRS) endif ifeq ("$(TARGET)", "lib") lib: makefile $(BOUT_CONFIG_FILE) $(BOUT_TOP)/include $(BOUT_TOP)/lib $(OBJ) ifneq ("$(OBJ)foo", "foo") @echo " Adding $(OBJ) to libbout++.a" @$(AR) $(ARFLAGS) $(LIB_A) $(OBJ) @$(RANLIB) $(LIB) endif endif ifeq ("$(TARGET)", "sub") LIB=$(MODULE_DIR)/$(SUB_NAME).a sub: makefile $(BOUT_CONFIG_FILE) $(BOUT_TOP)/include $(BOUT_TOP)/lib $(OBJ) ifneq ("$(OBJ)foo", "foo") @echo " Adding $(OBJ) to $(LIB)" @$(AR) $(ARFLAGS) $(LIB) $(OBJ) @$(RANLIB) $(LIB) endif endif runtest: ./runtest ifneq ("$(TARGET)", "sub") ifneq ("$(TARGET)", "libfast") ifneq ("$(TARGET)", "lib") ifneq ("$(TARGET)", "runtest") #################################################################### # Make libbout++.a if it doesn't exist with the checklib target #################################################################### libbout++.a: @echo "Rebuilding out-of-date bout++ library" @$(MAKE) --no-print-directory -C $(BOUT_TOP) #################################################################### # Make the target (e.g. gas_compress) #################################################################### # first we remove a trailing slash, if present. Note that currently we # dont support several trailing slashes, as in fuu/bar/// DIRS_=$(DIRS:%/=%) # then we extract the directory name, in case it is a longer path # We are not in a recipe, so # needs to be escaped # $$ is an escaped $ DIRS__=$(shell for f in $(DIRS_) ; do echo $${f##*/};done) # now we can generate a list of libraries SUB_LIBS=$(DIRS__:%=%.a) $(SUB_LIBS):$(DIRS__) $(SOURCEC): checklib $(SOURCEC:%.cxx=%.o): $(LIB) $(TARGET): makefile $(BOUT_CONFIG_FILE) $(OBJ) $(SUB_LIBS) @echo " Linking" $(TARGET) @$(LD) -o $(TARGET) $(OBJ) $(SUB_LIBS) $(BOUT_LIBS) $(LDFLAGS) checklib: ifneq ("$(CHANGED)foo", "foo") @echo "Rebuilding out-of-date bout++ library" @$(MAKE) --no-print-directory -C $(BOUT_TOP) endif endif endif endif endif # Ignore missing requirement files -include .*.mk # If it is a libfast target, track changes to rebuild library if needed # # Further track dependencies using gcc's -M feature: # -MF write the generated dependency rule to a file # -MG assume missing headers will be generated and don't stop with an error # -MM generate dependency rule for prerequisite, skipping system headers # -MP add phony target for each header to prevent errors when header is missing # -MT add a target to the generated dependency # Ignore failure, in case some compiler does not support this %.o: $(BOUT_CONFIG_FILE) %.cxx @echo " Compiling " $(@:.o=.cxx) @$(CXX) $(BOUT_INCLUDE) $(BOUT_FLAGS) -c $(@:.o=.cxx) -o $@ ifeq ("$(TARGET)","libfast") test "$@" = "bout++-time.o" || touch $(BOUT_TOP)/lib/.last.o.file endif #################################################################### # Clean target. Pretty self explanatory. # NOTE: See that double colon (::) below? That's signifies a rule that can be added to later # See: # http://owen.sj.ca.us/~rk/howto/slides/make/slides/makecolon.html #################################################################### clean:: -@$(RM) -rf $(OBJ) $(DEPS) $(TARGET) @for pp in $(DIRS) $(DIRS_CLEAN); do echo " " cleaning $$pp; $(MAKE) --no-print-directory -C $$pp clean; done @$(RM) -f $(SUB_LIBS) -@$(RM) .*.mk @test -f make.config && ( find src | grep '\.o$$' && echo "WARNING: Some object files remain - which might cause issues. Clean with $(MAKE) clean-remove-object-files" ) || exit 0 clean-remove-object-files: find src|grep '\.o$$' | xargs rm distclean:: clean clean-tests @echo include cleaned # Removing the externalpackage installation. When we have more packages, need a better way @$(RM) -rf $(BOUT_TOP)/include/pvode @echo lib cleaned @$(RM) -rf $(BOUT_TOP)/lib/* -@$(RM) $(BOUT_TOP)/externalpackages/PVODE/lib/*.a -@$(RM) $(BOUT_TOP)/externalpackages/PVODE/source/obj/*.o -@$(RM) $(BOUT_TOP)/externalpackages/PVODE/precon/obj/*.o -@$(RM) -rf $(BOUT_TOP)/autom4te.cache make.config @echo externalpackages cleaned @touch $(BOUT_TOP)/configure @echo autom4te.cache cleaned -@$(RM) $(BOUT_TOP)/tools/pylib/boutconfig/__init__.py @echo generated Python boutconfig module cleaned clean-tests: clean-unit-tests clean-integrated-tests clean-mms-tests clean-unit-tests: @echo " tests/unit cleaned" @$(MAKE) --no-print-directory -C tests/unit clean clean-integrated-tests: @echo " tests/integrated cleaned" @$(MAKE) --no-print-directory -C tests/integrated clean clean-mms-tests: @echo " tests/MMS cleaned" @$(MAKE) --no-print-directory -C tests/MMS clean #################################################################### # Documentation #################################################################### MANUAL_DIR=$(BOUT_TOP)/manual doxygen: $(MAKE) -C $(MANUAL_DIR) doxygen breathe-autogen: $(MAKE) -C $(MANUAL_DIR) breathe_autogen sphinx-docs-html: $(MAKE) -C $(MANUAL_DIR) sphinx-html sphinx-docs-latex: $(MAKE) -C $(MANUAL_DIR) sphinx-pdf manual: $(MAKE) -C $(MANUAL_DIR) manual-html: $(MAKE) -C $(MANUAL_DIR) html manual-pdf: $(MAKE) -C $(MANUAL_DIR) pdf python: libfast $(MAKE) -C tools/pylib python3 python2: libfast $(MAKE) -C tools/pylib python2 python-all:python python2 ###################################################################### # Code coverage ###################################################################### GCOV = LCOV = GENHTML = abs_builddir = /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi # Code coverage # # Optional: # - CODE_COVERAGE_DIRECTORY: Top-level directory for code coverage reporting. # Multiple directories may be specified, separated by whitespace. # (Default: $(top_builddir)) # - CODE_COVERAGE_OUTPUT_FILE: Filename and path for the .info file generated # by lcov for code coverage. (Default: # bout-coverage.info) # - CODE_COVERAGE_OUTPUT_DIRECTORY: Directory for generated code coverage # reports to be created. (Default: # bout-coverage) # - CODE_COVERAGE_BRANCH_COVERAGE: Set to 1 to enforce branch coverage, # set to 0 to disable it and leave empty to stay with the default. # (Default: empty) # - CODE_COVERAGE_LCOV_SHOPTS_DEFAULT: Extra options shared between both lcov # instances. (Default: based on $CODE_COVERAGE_BRANCH_COVERAGE) # - CODE_COVERAGE_LCOV_SHOPTS: Extra options to shared between both lcov # instances. (Default: $CODE_COVERAGE_LCOV_SHOPTS_DEFAULT) # - CODE_COVERAGE_LCOV_OPTIONS_GCOVPATH: --gcov-tool pathtogcov # - CODE_COVERAGE_LCOV_OPTIONS_DEFAULT: Extra options to pass to the # collecting lcov instance. (Default: $CODE_COVERAGE_LCOV_OPTIONS_GCOVPATH) # - CODE_COVERAGE_LCOV_OPTIONS: Extra options to pass to the collecting lcov # instance. (Default: $CODE_COVERAGE_LCOV_OPTIONS_DEFAULT) # - CODE_COVERAGE_LCOV_RMOPTS_DEFAULT: Extra options to pass to the filtering # lcov instance. (Default: empty) # - CODE_COVERAGE_LCOV_RMOPTS: Extra options to pass to the filtering lcov # instance. (Default: $CODE_COVERAGE_LCOV_RMOPTS_DEFAULT) # - CODE_COVERAGE_GENHTML_OPTIONS_DEFAULT: Extra options to pass to the # genhtml instance. (Default: based on $CODE_COVERAGE_BRANCH_COVERAGE) # - CODE_COVERAGE_GENHTML_OPTIONS: Extra options to pass to the genhtml # instance. (Default: $CODE_COVERAGE_GENHTML_OPTIONS_DEFAULT) # - CODE_COVERAGE_IGNORE_PATTERN: Extra glob pattern of files to ignore # # The generated report will be titled using the $(PACKAGE_NAME) and # $(PACKAGE_VERSION). In order to add the current git hash to the title, # use the git-version-gen script, available online. # Optional variables CODE_COVERAGE_DIRECTORY ?= $(abs_builddir) CODE_COVERAGE_OUTPUT_FILE ?= bout-coverage.info CODE_COVERAGE_OUTPUT_DIRECTORY ?= bout-coverage CODE_COVERAGE_BRANCH_COVERAGE ?= CODE_COVERAGE_LCOV_SHOPTS_DEFAULT ?= $(if $(CODE_COVERAGE_BRANCH_COVERAGE),\ --rc lcov_branch_coverage=$(CODE_COVERAGE_BRANCH_COVERAGE)) CODE_COVERAGE_LCOV_SHOPTS ?= $(CODE_COVERAGE_LCOV_SHOPTS_DEFAULT) CODE_COVERAGE_LCOV_OPTIONS_GCOVPATH ?= --gcov-tool "$(GCOV)" CODE_COVERAGE_LCOV_OPTIONS_DEFAULT ?= $(CODE_COVERAGE_LCOV_OPTIONS_GCOVPATH) CODE_COVERAGE_LCOV_OPTIONS ?= $(CODE_COVERAGE_LCOV_OPTIONS_DEFAULT) CODE_COVERAGE_LCOV_RMOPTS_DEFAULT ?= CODE_COVERAGE_LCOV_RMOPTS ?= $(CODE_COVERAGE_LCOV_RMOPTS_DEFAULT) CODE_COVERAGE_GENHTML_OPTIONS_DEFAULT ?=\ $(if $(CODE_COVERAGE_BRANCH_COVERAGE),\ --rc genhtml_branch_coverage=$(CODE_COVERAGE_BRANCH_COVERAGE)) CODE_COVERAGE_GENHTML_OPTIONS ?= $(CODE_COVERAGE_GENHTML_OPTIONS_DEFAULT) CODE_COVERAGE_IGNORE_PATTERN ?= "*test*/*" # Use recursive makes in order to ignore errors during check check-code-coverage: @echo "Need to reconfigure with --enable-code-coverage" # Capture code coverage data code-coverage-capture: code-coverage-capture-hook @echo "Need to reconfigure with --enable-code-coverage" # Hook rule executed before code-coverage-capture, overridable by the user code-coverage-capture-hook: GITIGNOREFILES ?= GITIGNOREFILES += $(CODE_COVERAGE_OUTPUT_FILE) $(CODE_COVERAGE_OUTPUT_DIRECTORY) .PHONY: check-code-coverage code-coverage-capture code-coverage-capture-hook code-coverage-clean + make -j2 shared Compiling field.cxx Compiling nc_format.cxx Compiling ncxx4.cxx In file included from ../../include/field.hxx:41, from field.cxx:28: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../include/field.hxx:34: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../include/bout/scorepwrapper.hxx:5, from ../../../../include/bout/deriv_store.hxx:37, from ../../../../include/bout/mesh.hxx:49, from ncxx4.cxx:27: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../../include/dataformat.hxx:40, from ncxx4.hxx:48, from ncxx4.cxx:23: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/openmpi-x86_64/ncFile.h:2, from /usr/include/openmpi-x86_64/netcdf:16, from ncxx4.hxx:51: /usr/include/openmpi-x86_64/ncGroup.h: At global scope: /usr/include/openmpi-x86_64/ncGroup.h:18:14: warning: 'netCDF::file_id' defined but not used [-Wunused-variable] 18 | static int file_id; | ^~~~~~~ Compiling field2d.cxx In file included from ../../include/field.hxx:41, from ../../include/field2d.hxx:34, from field2d.cxx:33: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../include/boutcomm.hxx:33, from field2d.cxx:28: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling pnetcdf.cxx Compiling h5_format.cxx In file included from ../../../../include/utils.hxx:38, from h5_format.cxx:28: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../../include/dataformat.hxx:40, from ../../../../include/datafile.hxx:20, from ../../../../include/globals.hxx:30, from h5_format.cxx:23: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling field3d.cxx In file included from ../../include/field.hxx:41, from ../../include/field3d.hxx:30, from field3d.cxx:33: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../include/boutcomm.hxx:33, from field3d.cxx:28: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling datafile.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from datafile.cxx:39: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/globals.hxx:30, from datafile.cxx:38: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling fieldperp.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from fieldperp.cxx:31: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../include/boutcomm.hxx:33, from fieldperp.cxx:26: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling field_data.cxx Compiling dataformat.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from field_data.cxx:2: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../include/bout/mesh.hxx:46: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from dataformat.cxx:2: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../include/bout/mesh.hxx:46: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling formatfactory.cxx Compiling fieldgroup.cxx In file included from ../../include/utils.hxx:38, from formatfactory.cxx:15: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/globals.hxx:30, from formatfactory.cxx:2: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/field.hxx:41, from ../../include/field3d.hxx:30, from ../../include/bout/fieldgroup.hxx:5, from fieldgroup.cxx:2: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../include/field_data.hxx:37, from ../../include/bout/fieldgroup.hxx:4: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/openmpi-x86_64/ncFile.h:2, from /usr/include/openmpi-x86_64/netcdf:16, from impls/netcdf4/ncxx4.hxx:51, from formatfactory.cxx:8: /usr/include/openmpi-x86_64/ncGroup.h: At global scope: /usr/include/openmpi-x86_64/ncGroup.h:18:14: warning: 'netCDF::file_id' defined but not used [-Wunused-variable] 18 | static int file_id; | ^~~~~~~ Compiling cyclic.cxx In file included from ../../../../../include/field.hxx:41, from ../../../../../include/field2d.hxx:34, from ../../../../../include/derivs.hxx:32, from cyclic.cxx:38: ../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../../../include/field.hxx:34: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling field_factory.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ../../include/field_factory.hxx:32, from field_factory.cxx:24: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/globals.hxx:30, from field_factory.cxx:22: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling invert_parderiv.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/invert_parderiv.hxx:34, from invert_parderiv.cxx:30: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../include/field.hxx:34: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling parderiv_factory.cxx Compiling fieldgenerators.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/invert_parderiv.hxx:34, from parderiv_factory.cxx:3: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../../include/boutcomm.hxx:33, from parderiv_factory.cxx:2: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ../../include/field_factory.hxx:32, from fieldgenerators.hxx:11, from fieldgenerators.cxx:2: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../include/boutexception.hxx:7, from fieldgenerators.hxx:10: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling serial_tri.cxx In file included from ../../../../../include/field.hxx:41, from ../../../../../include/fieldperp.hxx:31, from ../../../../../include/invert_laplace.hxx:41, from serial_tri.hxx:32, from serial_tri.cxx:28: ../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../../../include/dataformat.hxx:40, from ../../../../../include/datafile.hxx:20, from ../../../../../include/globals.hxx:30, from serial_tri.cxx:27: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling initialprofiles.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from initialprofiles.cxx:39: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../include/bout/mesh.hxx:46: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling serial_band.cxx In file included from ../../../../../include/field.hxx:41, from ../../../../../include/fieldperp.hxx:31, from ../../../../../include/invert_laplace.hxx:41, from serial_band.hxx:32, from serial_band.cxx:28: ../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../../../include/dataformat.hxx:40, from ../../../../../include/datafile.hxx:20, from ../../../../../include/globals.hxx:30, from serial_band.cxx:27: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling vecops.cxx Compiling pdd.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from vecops.cxx:27: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../include/bout/mesh.hxx:46: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../../include/bout/bout_enum_class.hxx:27, from ../../../../../include/fft.hxx:33, from pdd.cxx:34: ../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../../../../include/boutexception.hxx:7, from pdd.cxx:33: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling spt.cxx Compiling vector2d.cxx In file included from ../../../../../include/bout/scorepwrapper.hxx:5, from ../../../../../include/bout/deriv_store.hxx:37, from ../../../../../include/bout/mesh.hxx:49, from spt.cxx:35: ../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../../../../include/bout/mesh.hxx:46: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/field.hxx:41, from ../../include/field2d.hxx:34, from ../../include/vector2d.hxx:40, from vector2d.cxx:33: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/globals.hxx:30, from vector2d.cxx:31: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling vector3d.cxx In file included from ../../include/field.hxx:41, from ../../include/field3d.hxx:30, from ../../include/vector3d.hxx:37, from vector3d.cxx:33: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/globals.hxx:30, from vector3d.cxx:31: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling petsc_laplace.cxx In file included from ../../../../../include/utils.hxx:38, from ../../../../../include/options.hxx:45, from petsc_laplace.hxx:66, from petsc_laplace.cxx:28: ../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../../../include/dataformat.hxx:40, from ../../../../../include/datafile.hxx:20, from ../../../../../include/globals.hxx:30, from petsc_laplace.hxx:63: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling where.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from where.cxx:26: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../include/bout/mesh.hxx:46: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling globalfield.cxx Compiling mumps_laplace.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ../../include/bout/globalfield.hxx:12, from globalfield.cxx:2: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../include/bout/mesh.hxx:46: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../../include/field.hxx:41, from ../../../../../include/fieldperp.hxx:31, from ../../../../../include/invert_laplace.hxx:41, from mumps_laplace.hxx:31, from mumps_laplace.cxx:26: ../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../../../include/field.hxx:34: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling cyclic_laplace.cxx In file included from ../../../../../include/bout/scorepwrapper.hxx:5, from ../../../../../include/bout/deriv_store.hxx:37, from ../../../../../include/bout/mesh.hxx:49, from cyclic_laplace.cxx:38: ../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../../../include/dataformat.hxx:40, from ../../../../../include/datafile.hxx:20, from ../../../../../include/globals.hxx:30, from cyclic_laplace.cxx:36: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling generated_fieldops.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from generated_fieldops.cxx:2: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../include/bout/mesh.hxx:46: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling shoot_laplace.cxx In file included from ../../../../../include/field.hxx:41, from ../../../../../include/fieldperp.hxx:31, from ../../../../../include/invert_laplace.hxx:41, from shoot_laplace.hxx:33, from shoot_laplace.cxx:34: ../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../../../include/field.hxx:34: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling boutmesh.cxx In file included from ../../../../include/bout/scorepwrapper.hxx:5, from ../../../../include/bout/deriv_store.hxx:37, from ../../../../include/bout/mesh.hxx:49, from boutmesh.hxx:7, from boutmesh.cxx:36: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from boutmesh.hxx:5: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling multigrid_laplace.cxx In file included from ../../../../../include/utils.hxx:38, from ../../../../../include/options.hxx:45, from multigrid_laplace.hxx:38, from multigrid_laplace.cxx:30: ../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from multigrid_laplace.hxx:34: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../../include/bout/array.hxx:31, from ../../../../include/utils.hxx:36, from ../../../../include/options.hxx:45, from ../../../../include/bout/deriv_store.hxx:42: In member function 'std::__shared_ptr, (__gnu_cxx::_Lock_policy)2>::operator bool() const', inlined from 'std::operator== >(std::shared_ptr > const&, decltype(nullptr))bool' at /usr/include/c++/13/bits/shared_ptr.h:562:14, inlined from 'Array >::empty() const' at ../../../../include/bout/array.hxx:202:16, inlined from 'Field3D::isAllocated() const' at ../../../../include/field3d.hxx:206:48, inlined from 'BoutMesh::pack_data(std::vector > const&, int, int, int, int, double*)' at boutmesh.cxx:2029:7: /usr/include/c++/13/bits/shared_ptr_base.h:1670:16: warning: potential null pointer dereference [-Wnull-dereference] 1670 | { return _M_ptr != nullptr; } | ^~~~~~ In member function 'std::__shared_ptr, (__gnu_cxx::_Lock_policy)2>::operator bool() const', inlined from 'std::operator== >(std::shared_ptr > const&, decltype(nullptr))bool' at /usr/include/c++/13/bits/shared_ptr.h:562:14, inlined from 'Array >::empty() const' at ../../../../include/bout/array.hxx:202:16, inlined from 'Field2D::isAllocated() const' at ../../../../include/field2d.hxx:104:48, inlined from 'BoutMesh::pack_data(std::vector > const&, int, int, int, int, double*)' at boutmesh.cxx:2040:7: /usr/include/c++/13/bits/shared_ptr_base.h:1670:16: warning: potential null pointer dereference [-Wnull-dereference] 1670 | { return _M_ptr != nullptr; } | ^~~~~~ Compiling multigrid_alg.cxx In file included from ../../../../../include/utils.hxx:38, from ../../../../../include/options.hxx:45, from multigrid_laplace.hxx:38, from multigrid_alg.cxx:30: ../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from multigrid_laplace.hxx:34: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling shiftedmetric.cxx In file included from ../../../include/bout/scorepwrapper.hxx:5, from ../../../include/bout/deriv_store.hxx:37, from ../../../include/bout/mesh.hxx:49, from shiftedmetric.cxx:10: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../../include/bout/mesh.hxx:46: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling multigrid_solver.cxx In file included from ../../../../../include/utils.hxx:38, from ../../../../../include/options.hxx:45, from multigrid_laplace.hxx:38, from multigrid_solver.cxx:30: ../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from multigrid_laplace.hxx:34: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling naulin_laplace.cxx Compiling fci.cxx In file included from ../../../../../include/bout/scorepwrapper.hxx:5, from ../../../../../include/bout/deriv_store.hxx:37, from ../../../../../include/bout/mesh.hxx:49, from naulin_laplace.cxx:140: ../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../../../../include/boutexception.hxx:7, from naulin_laplace.cxx:139: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/bout/paralleltransform.hxx:10, from fci.hxx:29, from fci.cxx:39: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../include/field.hxx:34: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling identity.cxx In file included from ../../../include/bout/scorepwrapper.hxx:5, from ../../../include/bout/deriv_store.hxx:37, from ../../../include/bout/mesh.hxx:49, from identity.cxx:9: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../../include/bout/mesh.hxx:46: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling invert_laplace.cxx In file included from ../../../include/bout/scorepwrapper.hxx:5, from ../../../include/bout/deriv_store.hxx:37, from ../../../include/bout/mesh.hxx:49, from invert_laplace.cxx:34: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../../include/bout/mesh.hxx:46: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ invert_laplace.cxx: In constructor 'Laplacian::Laplacian(Options*, CELL_LOC, Mesh*)': invert_laplace.cxx:100:24: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations] 100 | Laplacian::setFlags(flags); | ~~~~~~~~~~~~~~~~~~~^~~~~~~ In file included from invert_laplace.cxx:36: ../../../include/invert_laplace.hxx:189:16: note: declared here 189 | virtual void setFlags(int f); | ^~~~~~~~ invert_laplace.cxx: In function 'int invert_laplace(const FieldPerp&, FieldPerp&, int, const Field2D*, const Field2D*, const Field2D*)': invert_laplace.cxx:770:16: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations] 770 | lap->setFlags(flags); | ~~~~~~~~~~~~~^~~~~~~ ../../../include/invert_laplace.hxx:189:16: note: declared here 189 | virtual void setFlags(int f); | ^~~~~~~~ invert_laplace.cxx: In function 'int invert_laplace(const Field3D&, Field3D&, int, const Field2D*, const Field2D*, const Field2D*)': invert_laplace.cxx:800:16: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations] 800 | lap->setFlags(flags); | ~~~~~~~~~~~~~^~~~~~~ ../../../include/invert_laplace.hxx:189:16: note: declared here 189 | virtual void setFlags(int f); | ^~~~~~~~ invert_laplace.cxx: In function 'const Field3D invert_laplace(const Field3D&, int, const Field2D*, const Field2D*, const Field2D*)': invert_laplace.cxx:831:16: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations] 831 | lap->setFlags(flags); | ~~~~~~~~~~~~~^~~~~~~ ../../../include/invert_laplace.hxx:189:16: note: declared here 189 | virtual void setFlags(int f); | ^~~~~~~~ Compiling gridfromoptions.cxx In file included from ../../../include/utils.hxx:38, from ../../../include/options.hxx:45, from ../../../include/bout/griddata.hxx:31, from gridfromoptions.cxx:2: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/stdexcept:38, from /usr/include/c++/13/system_error:43, from /usr/include/c++/13/bits/ios_base.h:46, from /usr/include/c++/13/streambuf:43, from ../../../include/multiostream.hxx:4, from ../../../include/output.hxx:32, from ../../../include/options.hxx:44: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling laplacefactory.cxx In file included from ../../../include/field.hxx:41, from ../../../include/fieldperp.hxx:31, from ../../../include/invert_laplace.hxx:41, from laplacefactory.hxx:7, from laplacefactory.cxx:6: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/globals.hxx:30, from laplacefactory.cxx:2: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling gridfromfile.cxx In file included from ../../../include/utils.hxx:38, from ../../../include/options.hxx:45, from ../../../include/bout/griddata.hxx:31, from gridfromfile.cxx:3: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/stdexcept:38, from /usr/include/c++/13/system_error:43, from /usr/include/c++/13/bits/ios_base.h:46, from /usr/include/c++/13/streambuf:43, from ../../../include/multiostream.hxx:4, from ../../../include/output.hxx:32, from ../../../include/options.hxx:44: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling laplacexy.cxx In file included from ../../../include/bout/scorepwrapper.hxx:5, from ../../../include/bout/deriv_store.hxx:37, from ../../../include/bout/mesh.hxx:49, from ../../../include/bout/invert/laplacexy.hxx:69, from laplacexy.cxx:6: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/sstream:40, from /usr/include/c++/13/complex:45, from /usr/include/openmpi-x86_64/petsc/petscsystypes.h:315, from /usr/include/openmpi-x86_64/petsc/petscsys.h:47, from /usr/include/openmpi-x86_64/petsc/petscvec.h:9, from /usr/include/openmpi-x86_64/petsc/petscmat.h:6, from /usr/include/openmpi-x86_64/petsc/petscpc.h:6, from /usr/include/openmpi-x86_64/petsc/petscksp.h:6, from laplacexy.cxx:4: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling bilinear.cxx In file included from ../../../include/bout/scorepwrapper.hxx:5, from ../../../include/bout/deriv_store.hxx:37, from ../../../include/bout/mesh.hxx:49, from bilinear.cxx:23: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../../include/bout/mesh.hxx:46: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling hermite_spline.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/interpolation.hxx:31, from hermite_spline.cxx:24: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/globals.hxx:30, from hermite_spline.cxx:23: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling laplacexz-cyclic.cxx In file included from ../../../../../include/utils.hxx:38, from ../../../../../include/options.hxx:45, from ../../../../../include/bout/invert/laplacexz.hxx:34, from laplacexz-cyclic.hxx:2, from laplacexz-cyclic.cxx:1: ../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/stdexcept:38, from /usr/include/c++/13/system_error:43, from /usr/include/c++/13/bits/ios_base.h:46, from /usr/include/c++/13/streambuf:43, from ../../../../../include/multiostream.hxx:4, from ../../../../../include/output.hxx:32, from ../../../../../include/options.hxx:44: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling monotonic_hermite_spline.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/interpolation.hxx:31, from monotonic_hermite_spline.cxx:24: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/globals.hxx:30, from monotonic_hermite_spline.cxx:23: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling laplacexz-petsc.cxx In file included from ../../../../../include/utils.hxx:38, from ../../../../../include/options.hxx:45, from ../../../../../include/bout/invert/laplacexz.hxx:34, from laplacexz-petsc.hxx:12, from laplacexz-petsc.cxx:11: ../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/stdexcept:38, from /usr/include/c++/13/system_error:43, from /usr/include/c++/13/bits/ios_base.h:46, from /usr/include/c++/13/streambuf:43, from ../../../../../include/multiostream.hxx:4, from ../../../../../include/output.hxx:32, from ../../../../../include/options.hxx:44: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling lagrange_4pt.cxx In file included from ../../../include/bout/scorepwrapper.hxx:5, from ../../../include/bout/deriv_store.hxx:37, from ../../../include/bout/mesh.hxx:49, from lagrange_4pt.cxx:23: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../../include/bout/mesh.hxx:46: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling laplacexz.cxx Compiling interpolation_factory.cxx In file included from ../../../include/utils.hxx:38, from ../../../include/options.hxx:45, from ../../../include/bout/invert/laplacexz.hxx:34, from impls/cyclic/laplacexz-cyclic.hxx:2, from laplacexz.cxx:1: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/stdexcept:38, from /usr/include/c++/13/system_error:43, from /usr/include/c++/13/bits/ios_base.h:46, from /usr/include/c++/13/streambuf:43, from ../../../include/multiostream.hxx:4, from ../../../include/output.hxx:32, from ../../../include/options.hxx:44: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/interpolation.hxx:31, from ../../../include/interpolation_factory.hxx:4, from interpolation_factory.cxx:1: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../include/field.hxx:34: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling fft_fftw.cxx Compiling difops.cxx In file included from ../../include/utils.hxx:38, from ../../include/options.hxx:45, from fft_fftw.cxx:29: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/globals.hxx:30, from fft_fftw.cxx:28: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/utils.hxx:38, from ../../include/options.hxx:45, from ../../include/bout/solver.hxx:42, from difops.cxx:27: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/globals.hxx:30, from difops.cxx:26: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling lapack_routines.cxx In file included from ../../include/utils.hxx:38, from lapack_routines.cxx:41: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/globals.hxx:30, from lapack_routines.cxx:38: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling interpolation.cxx Compiling physicsmodel.cxx In file included from ../../include/field.hxx:41, from ../../include/field3d.hxx:30, from ../../include/interpolation.hxx:31, from interpolation.cxx:27: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/globals.hxx:30, from interpolation.cxx:26: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/field.hxx:41, from ../../include/field3d.hxx:30, from ../../include/difops.hxx:39, from ../../include/bout.hxx:41, from ../../include/bout/physicsmodel.hxx:40, from physicsmodel.cxx:32: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../include/boutcomm.hxx:33, from ../../include/bout.hxx:39: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling mesh.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from mesh.cxx:3: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/globals.hxx:30, from mesh.cxx:2: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling smoothing.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from smoothing.cxx:35: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../include/bout/mesh.hxx:46: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling sourcex.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from sourcex.cxx:8: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/globals.hxx:30, from sourcex.cxx:5: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling boundary_standard.cxx Compiling gyro_average.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from boundary_standard.cxx:1: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../include/bout/mesh.hxx:46: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from gyro_average.cxx:30: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../include/bout/mesh.hxx:46: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ gyro_average.cxx: In function 'Field3D gyroPade0(const Field3D&, BoutReal, int)': gyro_average.cxx:170:16: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations] 170 | lap->setFlags(flags); | ~~~~~~~~~~~~~^~~~~~~ In file included from ../../include/gyro_average.hxx:36, from gyro_average.cxx:34: ../../include/invert_laplace.hxx:189:16: note: declared here 189 | virtual void setFlags(int f); | ^~~~~~~~ gyro_average.cxx: In function 'Field3D gyroPade0(const Field3D&, const Field2D&, int)': gyro_average.cxx:187:16: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations] 187 | lap->setFlags(flags); | ~~~~~~~~~~~~~^~~~~~~ ../../include/invert_laplace.hxx:189:16: note: declared here 189 | virtual void setFlags(int f); | ^~~~~~~~ gyro_average.cxx: In function 'Field3D gyroPade0(const Field3D&, const Field3D&, int)': gyro_average.cxx:194:19: warning: 'Field3D gyroPade0(const Field3D&, const Field2D&, int)' is deprecated: Please use version with separate inner_boundary_flags and outer_boundary_flags [-Wdeprecated-declarations] 194 | return gyroPade0(f, DC(rho), flags); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~ gyro_average.cxx:175:9: note: declared here 175 | Field3D gyroPade0(const Field3D& f, const Field2D& rho, int flags) { | ^~~~~~~~~ gyro_average.cxx: In function 'Field3D gyroPade1(const Field3D&, BoutReal, int)': gyro_average.cxx:209:16: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations] 209 | lap->setFlags(flags); | ~~~~~~~~~~~~~^~~~~~~ ../../include/invert_laplace.hxx:189:16: note: declared here 189 | virtual void setFlags(int f); | ^~~~~~~~ gyro_average.cxx: In function 'Field3D gyroPade1(const Field3D&, const Field2D&, int)': gyro_average.cxx:226:16: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations] 226 | lap->setFlags(flags); | ~~~~~~~~~~~~~^~~~~~~ ../../include/invert_laplace.hxx:189:16: note: declared here 189 | virtual void setFlags(int f); | ^~~~~~~~ gyro_average.cxx: In function 'Field3D gyroPade1(const Field3D&, const Field3D&, int)': gyro_average.cxx:232:19: warning: 'Field3D gyroPade1(const Field3D&, const Field2D&, int)' is deprecated: Please use version with separate inner_boundary_flags and outer_boundary_flags [-Wdeprecated-declarations] 232 | return gyroPade1(f, DC(rho), flags); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~ gyro_average.cxx:214:9: note: declared here 214 | Field3D gyroPade1(const Field3D& f, const Field2D& rho, int flags) { | ^~~~~~~~~ gyro_average.cxx: In function 'Field2D gyroPade1(const Field2D&, const Field2D&, int)': gyro_average.cxx:238:18: warning: 'Field3D gyroPade1(const Field3D&, const Field2D&, int)' is deprecated: Please use version with separate inner_boundary_flags and outer_boundary_flags [-Wdeprecated-declarations] 238 | tmp = gyroPade1(tmp, rho, flags); | ~~~~~~~~~^~~~~~~~~~~~~~~~~ gyro_average.cxx:214:9: note: declared here 214 | Field3D gyroPade1(const Field3D& f, const Field2D& rho, int flags) { | ^~~~~~~~~ gyro_average.cxx: In function 'Field3D gyroPade2(const Field3D&, BoutReal, int)': gyro_average.cxx:243:39: warning: 'Field3D gyroPade1(const Field3D&, BoutReal, int)' is deprecated: Please use version with separate inner_boundary_flags and outer_boundary_flags [-Wdeprecated-declarations] 243 | Field3D result = gyroPade1(gyroPade1(f, rho, flags), rho, flags); | ~~~~~~~~~^~~~~~~~~~~~~~~ gyro_average.cxx:197:9: note: declared here 197 | Field3D gyroPade1(const Field3D& f, BoutReal rho, int flags) { | ^~~~~~~~~ gyro_average.cxx:243:29: warning: 'Field3D gyroPade1(const Field3D&, BoutReal, int)' is deprecated: Please use version with separate inner_boundary_flags and outer_boundary_flags [-Wdeprecated-declarations] 243 | Field3D result = gyroPade1(gyroPade1(f, rho, flags), rho, flags); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gyro_average.cxx:197:9: note: declared here 197 | Field3D gyroPade1(const Field3D& f, BoutReal rho, int flags) { | ^~~~~~~~~ gyro_average.cxx: In function 'Field3D gyroPade2(const Field3D&, const Field2D&, int)': gyro_average.cxx:251:39: warning: 'Field3D gyroPade1(const Field3D&, const Field2D&, int)' is deprecated: Please use version with separate inner_boundary_flags and outer_boundary_flags [-Wdeprecated-declarations] 251 | Field3D result = gyroPade1(gyroPade1(f, rho, flags), rho, flags); | ~~~~~~~~~^~~~~~~~~~~~~~~ gyro_average.cxx:214:9: note: declared here 214 | Field3D gyroPade1(const Field3D& f, const Field2D& rho, int flags) { | ^~~~~~~~~ gyro_average.cxx:251:29: warning: 'Field3D gyroPade1(const Field3D&, const Field2D&, int)' is deprecated: Please use version with separate inner_boundary_flags and outer_boundary_flags [-Wdeprecated-declarations] 251 | Field3D result = gyroPade1(gyroPade1(f, rho, flags), rho, flags); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gyro_average.cxx:214:9: note: declared here 214 | Field3D gyroPade1(const Field3D& f, const Field2D& rho, int flags) { | ^~~~~~~~~ gyro_average.cxx: In function 'Field3D gyroPade2(const Field3D&, const Field3D&, int)': gyro_average.cxx:260:19: warning: 'Field3D gyroPade2(const Field3D&, const Field2D&, int)' is deprecated: Please use version with separate inner_boundary_flags and outer_boundary_flags [-Wdeprecated-declarations] 260 | return gyroPade2(f, DC(rho), flags); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~ gyro_average.cxx:250:9: note: declared here 250 | Field3D gyroPade2(const Field3D& f, const Field2D& rho, int flags) { | ^~~~~~~~~ Compiling snb.cxx In file included from ../../include/field.hxx:41, from ../../include/field3d.hxx:30, from ../../include/invert_parderiv.hxx:34, from ../../include/bout/snb.hxx:1, from snb.cxx:4: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../include/field.hxx:34: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling arkode.cxx In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/solver.hxx:42, from arkode.hxx:35, from arkode.cxx:28: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../../../include/boutexception.hxx:7, from ../../../../include/bout/solver.hxx:40: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling boundary_factory.cxx In file included from ../../include/field.hxx:41, from ../../include/field2d.hxx:34, from ../../include/boundary_op.hxx:9, from ../../include/boundary_factory.hxx:7, from boundary_factory.cxx:2: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/globals.hxx:30, from boundary_factory.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling pvode.cxx In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/solver.hxx:42, from pvode.hxx:34, from pvode.cxx:26: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../../../include/boutexception.hxx:7, from ../../../../include/bout/solver.hxx:40: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling boundary_region.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from boundary_region.cxx:2: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../include/bout/mesh.hxx:46: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling meshfactory.cxx Compiling cvode.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from meshfactory.hxx:7, from meshfactory.cxx:2: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../include/bout/mesh.hxx:46: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/solver.hxx:42, from cvode.hxx:34, from cvode.cxx:27: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../../../include/boutexception.hxx:7, from ../../../../include/bout/solver.hxx:40: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling surfaceiter.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ../../include/bout/surfaceiter.hxx:10, from surfaceiter.cxx:2: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../include/bout/mesh.hxx:46: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling ida.cxx Compiling coordinates.cxx In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/solver.hxx:42, from ida.hxx:35, from ida.cxx:30: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../../../include/boutexception.hxx:7, from ../../../../include/bout/solver.hxx:40: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/field.hxx:41, from ../../include/field3d.hxx:30, from ../../include/bout/paralleltransform.hxx:10, from ../../include/bout/coordinates.hxx:36, from coordinates.cxx:9: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../include/bout/../boutexception.hxx:7, from ../../include/bout/assert.hxx:20, from coordinates.cxx:7: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling petsc.cxx In file included from ../../../../include/field.hxx:41, from ../../../../include/field2d.hxx:34, from petsc.hxx:36, from petsc.cxx:27: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/sstream:40, from /usr/include/c++/13/complex:45, from /usr/include/openmpi-x86_64/petsc/petscsystypes.h:315, from /usr/include/openmpi-x86_64/petsc/petscsys.h:47, from /usr/include/openmpi-x86_64/petsc/petscbag.h:4, from /usr/include/openmpi-x86_64/petsc/petsc.h:5, from petsc.hxx:34: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ petsc.cxx: In function 'PetscErrorCode PetscMonitor(TS, PetscInt, PetscReal, Vec, void*)': petsc.cxx:838:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 838 | if (s->interpolate) ierr = TSInterpolate(ts,s->next_output,interpolatedX);CHKERRQ(ierr); | ^~ In file included from /usr/include/openmpi-x86_64/petsc/petscsys.h:1207: /usr/include/openmpi-x86_64/petsc/petscerror.h:336:24: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 336 | #define PetscCall(...) do { \ | ^~ /usr/include/openmpi-x86_64/petsc/petscerror.h:368:22: note: in expansion of macro 'PetscCall' 368 | #define CHKERRQ(...) PetscCall(__VA_ARGS__) | ^~~~~~~~~ petsc.cxx:838:79: note: in expansion of macro 'CHKERRQ' 838 | if (s->interpolate) ierr = TSInterpolate(ts,s->next_output,interpolatedX);CHKERRQ(ierr); | ^~~~~~~ Compiling snes.cxx In file included from ../../../../include/bout/bout_enum_class.hxx:27, from snes.hxx:38, from snes.cxx:4: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from snes.hxx:35: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling index_derivs.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/index_derivs.hxx:37, from index_derivs.cxx:24: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from ../../include/bout/index_derivs.hxx:33: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling imex-bdf2.cxx In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/solver.hxx:42, from imex-bdf2.hxx:45, from imex-bdf2.cxx:4: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from imex-bdf2.hxx:42: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling power.cxx In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/solver.hxx:42, from power.hxx:33, from power.cxx:3: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from power.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling slepc.cxx Compiling adams_bashforth.cxx In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/solver.hxx:42, from adams_bashforth.hxx:31, from adams_bashforth.cxx:1: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../../../include/boutexception.hxx:7, from ../../../../include/bout/solver.hxx:40: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling karniadakis.cxx In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/solver.hxx:42, from karniadakis.hxx:41, from karniadakis.cxx:39: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from karniadakis.hxx:38: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling rk4.cxx In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/solver.hxx:42, from rk4.hxx:36, from rk4.cxx:2: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from rk4.hxx:33: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling euler.cxx In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/solver.hxx:42, from euler.hxx:36, from euler.cxx:2: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from euler.hxx:33: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling rk3-ssp.cxx In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/solver.hxx:42, from rk3-ssp.hxx:42, from rk3-ssp.cxx:2: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from rk3-ssp.hxx:39: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling rkf45.cxx In file included from ../../../../../../include/utils.hxx:38, from ../../../../../../include/options.hxx:45, from ../../../../../../include/bout/rkscheme.hxx:39, from rkf45.hxx:7, from rkf45.cxx:1: ../../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/stdexcept:38, from /usr/include/c++/13/system_error:43, from /usr/include/c++/13/bits/ios_base.h:46, from /usr/include/c++/13/streambuf:43, from ../../../../../../include/multiostream.hxx:4, from ../../../../../../include/output.hxx:32, from ../../../../../../include/options.hxx:44: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling parallel_boundary_region.cxx Compiling parallel_boundary_op.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from parallel_boundary_op.cxx:2: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../include/bout/mesh.hxx:46: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling cashkarp.cxx Compiling fv_ops.cxx In file included from ../../../../../../include/utils.hxx:38, from ../../../../../../include/options.hxx:45, from ../../../../../../include/bout/rkscheme.hxx:39, from cashkarp.hxx:7, from cashkarp.cxx:1: ../../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/stdexcept:38, from /usr/include/c++/13/system_error:43, from /usr/include/c++/13/bits/ios_base.h:46, from /usr/include/c++/13/streambuf:43, from ../../../../../../include/multiostream.hxx:4, from ../../../../../../include/output.hxx:32, from ../../../../../../include/options.hxx:44: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/../field.hxx:41, from ../../include/bout/../field3d.hxx:30, from ../../include/bout/fv_ops.hxx:9, from fv_ops.cxx:2: ../../include/bout/../msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/bout/../msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../include/bout/../dataformat.hxx:40, from ../../include/bout/../datafile.hxx:20, from ../../include/bout/../globals.hxx:30, from ../../include/bout/fv_ops.hxx:8: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ fv_ops.cxx: In function 'FV::communicateFluxes(Field3D&)': fv_ops.cxx:436:17: warning: 'xout' may be used uninitialized [-Wmaybe-uninitialized] 436 | mesh->wait(xout); | ~~~~~~~~~~^~~~~~ fv_ops.cxx:408:22: note: 'xout' was declared here 408 | comm_handle xin, xout; | ^~~~ Compiling rkgeneric.cxx In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/solver.hxx:42, from rkgeneric.hxx:34, from rkgeneric.cxx:2: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from rkgeneric.hxx:31: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling rk4simple.cxx In file included from ../../../../../../include/utils.hxx:38, from ../../../../../../include/options.hxx:45, from ../../../../../../include/bout/rkscheme.hxx:39, from rk4simple.hxx:7, from rk4simple.cxx:1: ../../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/stdexcept:38, from /usr/include/c++/13/system_error:43, from /usr/include/c++/13/bits/ios_base.h:46, from /usr/include/c++/13/streambuf:43, from ../../../../../../include/multiostream.hxx:4, from ../../../../../../include/output.hxx:32, from ../../../../../../include/options.hxx:44: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling rkf34.cxx Compiling options_ini.cxx In file included from ../../../../../../include/utils.hxx:38, from ../../../../../../include/options.hxx:45, from ../../../../../../include/bout/rkscheme.hxx:39, from rkf34.hxx:7, from rkf34.cxx:1: ../../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/stdexcept:38, from /usr/include/c++/13/system_error:43, from /usr/include/c++/13/bits/ios_base.h:46, from /usr/include/c++/13/streambuf:43, from ../../../../../../include/multiostream.hxx:4, from ../../../../../../include/output.hxx:32, from ../../../../../../include/options.hxx:44: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/utils.hxx:38, from options_ini.cxx:52: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/sstream:40, from /usr/include/c++/13/complex:45, from ../../../include/dcomplex.hxx:35, from ../../../include/utils.hxx:33: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling rkscheme.cxx In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/rkscheme.hxx:39, from rkschemefactory.hxx:7, from rkscheme.cxx:1: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/stdexcept:38, from /usr/include/c++/13/system_error:43, from /usr/include/c++/13/bits/ios_base.h:46, from /usr/include/c++/13/streambuf:43, from ../../../../include/multiostream.hxx:4, from ../../../../include/output.hxx:32, from ../../../../include/options.hxx:44: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling options_netcdf.cxx In file included from ../../../include/utils.hxx:38, from ../../../include/options.hxx:45, from ../../../include/options_netcdf.hxx:44, from options_netcdf.cxx:4: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/stdexcept:38, from /usr/include/c++/13/system_error:43, from /usr/include/c++/13/bits/ios_base.h:46, from /usr/include/c++/13/streambuf:43, from ../../../include/multiostream.hxx:4, from ../../../include/output.hxx:32, from ../../../include/options.hxx:44: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/openmpi-x86_64/ncFile.h:2, from /usr/include/openmpi-x86_64/netcdf:16, from options_netcdf.cxx:7: /usr/include/openmpi-x86_64/ncGroup.h: At global scope: /usr/include/openmpi-x86_64/ncGroup.h:18:14: warning: 'netCDF::file_id' defined but not used [-Wunused-variable] 18 | static int file_id; | ^~~~~~~ Compiling rkschemefactory.cxx In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/rkscheme.hxx:39, from rkschemefactory.hxx:7, from rkschemefactory.cxx:1: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/stdexcept:38, from /usr/include/c++/13/system_error:43, from /usr/include/c++/13/bits/ios_base.h:46, from /usr/include/c++/13/streambuf:43, from ../../../../include/multiostream.hxx:4, from ../../../../include/output.hxx:32, from ../../../../include/options.hxx:44: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling bout_types.cxx In file included from bout_types.cxx:4: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../include/boutexception.hxx:7, from bout_types.cxx:2: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling split-rk.cxx In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/solver.hxx:42, from split-rk.hxx:36, from split-rk.cxx:1: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../../../include/boutexception.hxx:7, from ../../../../include/bout/solver.hxx:40: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling boutexception.cxx In file included from boutexception.cxx:5: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from boutexception.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling derivs.cxx In file included from ../../include/field.hxx:41, from ../../include/field2d.hxx:34, from ../../include/derivs.hxx:32, from derivs.cxx:42: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/globals.hxx:30, from derivs.cxx:41: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling solver.cxx In file included from ../../include/utils.hxx:38, from ../../include/options.hxx:45, from ../../include/bout/solver.hxx:42, from solver.cxx:23: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../include/boutexception.hxx:7, from ../../include/bout/solver.hxx:40: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling msg_stack.cxx In file included from msg_stack.cxx:28: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../include/msg_stack.hxx:35: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling options.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ../../include/field_factory.hxx:32, from options.cxx:2: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../include/boutexception.hxx:7, from options.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling solverfactory.cxx In file included from impls/pvode/pvode.hxx:37, from solverfactory.cxx:12: ../../include/pvode/nvector.h:93: warning: "PVEC_REAL_MPI_TYPE" redefined 93 | #define PVEC_REAL_MPI_TYPE MPI_DOUBLE | In file included from /usr/include/openmpi-x86_64/nvector/nvector_parallel.h:44, from impls/arkode/arkode.hxx:47, from solverfactory.cxx:4: /usr/include/openmpi-x86_64/sundials/sundials_mpi_types.h:38: note: this is the location of the previous definition 38 | #define PVEC_REAL_MPI_TYPE MPI_SUNREALTYPE | In file included from ../../include/utils.hxx:38, from ../../include/options.hxx:45, from ../../include/bout/solver.hxx:42, from ../../include/bout/solverfactory.hxx:8, from solverfactory.cxx:1: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../include/boutexception.hxx:7, from ../../include/bout/generic_factory.hxx:7, from ../../include/bout/solverfactory.hxx:7: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling output.cxx In file included from ../../include/utils.hxx:38, from output.cxx:30: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/stdexcept:38, from /usr/include/c++/13/system_error:43, from /usr/include/c++/13/bits/ios_base.h:46, from /usr/include/c++/13/streambuf:43, from ../../include/multiostream.hxx:4, from ../../include/output.hxx:32, from output.cxx:29: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling bout++.cxx Compiling utils.cxx In file included from ../include/field.hxx:41, from ../include/field2d.hxx:34, from ../include/boundary_op.hxx:9, from ../include/boundary_factory.hxx:7, from bout++.cxx:41: ../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../include/field.hxx:34: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/utils.hxx:38, from utils.cxx:26: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/sstream:40, from /usr/include/c++/13/complex:45, from ../../include/dcomplex.hxx:35, from ../../include/utils.hxx:33: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling optionsreader.cxx In file included from ../../include/utils.hxx:38, from ../../include/options.hxx:45, from ../../include/optionsreader.hxx:37, from optionsreader.cxx:1: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/stdexcept:38, from /usr/include/c++/13/system_error:43, from /usr/include/c++/13/bits/ios_base.h:46, from /usr/include/c++/13/streambuf:43, from ../../include/multiostream.hxx:4, from ../../include/output.hxx:32, from ../../include/options.hxx:44: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling boutcomm.cxx Compiling timer.cxx Compiling range.cxx Compiling petsclib.cxx In file included from ../../include/bout/sys/timer.hxx:11, from timer.cxx:1: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/stdexcept:38, from /usr/include/c++/13/system_error:43, from /usr/include/c++/13/bits/ios_base.h:46, from /usr/include/c++/13/iomanip:42, from ../../include/bout/sys/timer.hxx:8: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/utils.hxx:38, from ../../include/options.hxx:45, from petsclib.cxx:5: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../include/boutcomm.hxx:33, from petsclib.cxx:4: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling expressionparser.cxx In file included from ../../include/utils.hxx:38, from expressionparser.cxx:28: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from ../../include/bout/sys/expressionparser.hxx:33, from expressionparser.cxx:25: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling slepclib.cxx Compiling type_name.cxx In file included from ../../include/field.hxx:41, from ../../include/field2d.hxx:34, from type_name.cxx:3: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../include/field.hxx:34: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling bout++-time.cxx Creating libbout++.so invert/laplace/impls/spt/spt.cxx: In member function '__ct_base ': invert/laplace/impls/spt/spt.cxx:63:37: warning: argument 1 value '18446744073709551615' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 63 | alldata = new SPT_data[ye - ys + 1]; | ^ /usr/include/c++/13/new:128:26: note: in a call to allocation function 'operator new []' declared here 128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ invert/laplace/impls/pdd/pdd.cxx: In member function 'solve': invert/laplace/impls/pdd/pdd.cxx:83:38: warning: argument 1 value '18446744073709551615' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 83 | data = new PDD_data[ye - ys + 1]; | ^ /usr/include/c++/13/new:128:26: note: in a call to allocation function 'operator new []' declared here 128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ Creating libbout++.so src/invert/laplace/impls/spt/spt.cxx: In member function '__ct_base ': src/invert/laplace/impls/spt/spt.cxx:63:37: warning: argument 1 value '18446744073709551615' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 63 | alldata = new SPT_data[ye - ys + 1]; | ^ /usr/include/c++/13/new:128:26: note: in a call to allocation function 'operator new []' declared here 128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ src/invert/laplace/impls/pdd/pdd.cxx: In member function 'solve': src/invert/laplace/impls/pdd/pdd.cxx:83:38: warning: argument 1 value '18446744073709551615' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 83 | data = new PDD_data[ye - ys + 1]; | ^ /usr/include/c++/13/new:128:26: note: in a call to allocation function 'operator new []' declared here 128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ + ls -l lib total 86900 lrwxrwxrwx. 1 mockbuild mock 18 Apr 4 13:55 libbout++.so -> libbout++.so.4.4.0 -rwxr-xr-x. 1 mockbuild mock 79060552 Apr 4 13:55 libbout++.so.4.4.0 -rw-r--r--. 1 mockbuild mock 6658026 Apr 4 13:48 libpvode.a lrwxrwxrwx. 1 mockbuild mock 17 Apr 4 13:55 libpvode.so -> libpvode.so.1.0.0 -rwxr-xr-x. 1 mockbuild mock 785880 Apr 4 13:55 libpvode.so.1.0.0 -rw-r--r--. 1 mockbuild mock 2108398 Apr 4 13:48 libpvpre.a lrwxrwxrwx. 1 mockbuild mock 17 Apr 4 13:55 libpvpre.so -> libpvpre.so.1.0.0 -rwxr-xr-x. 1 mockbuild mock 367592 Apr 4 13:55 libpvpre.so.1.0.0 + make -j2 python make -C tools/pylib python3 make[1]: Entering directory '/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tools/pylib' PY=python3 make -C _boutcore_build pseudoinstall make[2]: Entering directory '/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tools/pylib/_boutcore_build' Generating boutcore.pyx Generating setup.py Generating helper.cxx Generating helper.h Generating resolve_enum.pxd resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied Generating boutcpp.pxd warning: resolve_enum.pxd:49:25: 'deflt' redeclared warning: resolve_enum.pxd:189:28: 'Standard' redeclared warning: resolve_enum.pxd:223:19: 'Standard' redeclared Compiling boutcore.pyx because it changed. [1/1] Cythonizing boutcore.pyx running build_ext building 'boutcore' extension creating build creating build/temp.linux-x86_64-cpython-311 mpic++ -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include -I/usr/include -I/usr/include -I/usr/include/openmpi-x86_64/petsc -I/usr/include/python3.11 -c boutcore.cpp -o build/temp.linux-x86_64-cpython-311/boutcore.o -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DHAS_PRETTY_FUNCTION -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -DSIGHANDLE -DLOGCOLOR -DBOUT_VERSION_STRING=4.4.2 -DBOUT_VERSION_DOUBLE=4.42 -DBACKTRACE -fPIC -DBOUT_HAS_FFTW -DNCDF4 -DHDF5 -DBOUT_HAS_PETSC -DBOUT_HAS_IDA -DBOUT_HAS_CVODE -DBOUT_HAS_ARKODE -DBOUT_HAS_PVODE -DBOUT_HAS_GETTEXT -DBOUT_LOCALE_PATH=/usr/share/locale -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DHAS_PRETTY_FUNCTION -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -DSIGHANDLE -DLOGCOLOR -DBOUT_VERSION_STRING=4.4.2 -DBOUT_VERSION_DOUBLE=4.42 -DBACKTRACE -fPIC -DBOUT_HAS_FFTW -DNCDF4 -DHDF5 -DBOUT_HAS_PETSC -DBOUT_HAS_IDA -DBOUT_HAS_CVODE -DBOUT_HAS_ARKODE -DBOUT_HAS_PVODE -DBOUT_HAS_GETTEXT -DBOUT_LOCALE_PATH=/usr/share/locale -DBOUT_FLAGS_STRING=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DHAS_PRETTY_FUNCTION -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -DSIGHANDLE -DLOGCOLOR -DBOUT_VERSION_STRING=4.4.2 -DBOUT_VERSION_DOUBLE=4.42 -DBACKTRACE -fPIC -DBOUT_HAS_FFTW -DNCDF4 -DHDF5 -DBOUT_HAS_PETSC -DBOUT_HAS_IDA -DBOUT_HAS_CVODE -DBOUT_HAS_ARKODE -DBOUT_HAS_PVODE -DBOUT_HAS_GETTEXT -DBOUT_LOCALE_PATH=/usr/share/locale -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DHAS_PRETTY_FUNCTION -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -DSIGHANDLE -DLOGCOLOR -DBOUT_VERSION_STRING=4.4.2 -DBOUT_VERSION_DOUBLE=4.42 -DBACKTRACE -fPIC -DBOUT_HAS_FFTW -DNCDF4 -DHDF5 -DBOUT_HAS_PETSC -DBOUT_HAS_IDA -DBOUT_HAS_CVODE -DBOUT_HAS_ARKODE -DBOUT_HAS_PVODE -DBOUT_HAS_GETTEXT -DBOUT_LOCALE_PATH=/usr/share/locale In file included from /usr/lib64/python3.11/site-packages/numpy/core/include/numpy/ndarraytypes.h:1940, from /usr/lib64/python3.11/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib64/python3.11/site-packages/numpy/core/include/numpy/arrayobject.h:5, from boutcore.cpp:1366: /usr/lib64/python3.11/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ In file included from /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/field.hxx:41, from /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/field3d.hxx:30, from boutcore.cpp:1343: /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/msg_stack.hxx: In destructor ‘MsgStackItem::~MsgStackItem()’: /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/msg_stack.hxx:147:33: warning: ‘bool std::uncaught_exception()’ is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from boutcore.cpp:1337: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ boutcore.cpp: At global scope: boutcore.cpp:33619:45: warning: ‘__pyx_obj_8boutcore_Vector2D* __pyx_f_8boutcore_v2dFromObj(Vector2D)’ defined but not used [-Wunused-function] 33619 | static struct __pyx_obj_8boutcore_Vector2D *__pyx_f_8boutcore_v2dFromObj(Vector2D __pyx_v_i) { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ boutcore.cpp: In function ‘__pyx_f_12resolve_enum_resolve_cell_loc(_object*)’: boutcore.cpp:9074:10: warning: ‘__pyx_r’ may be used uninitialized [-Wmaybe-uninitialized] 9074 | return __pyx_r; | ^~~~~~~ boutcore.cpp:8717:12: note: ‘__pyx_r’ was declared here 8717 | CELL_LOC __pyx_r; | ^~~~~~~ In function ‘__pyx_pf_8boutcore_44bracket(_object*, __pyx_obj_8boutcore_Field3D*, __pyx_obj_8boutcore_Field3D*, _object*, _object*)’, inlined from ‘__pyx_pw_8boutcore_45bracket(_object*, _object* const*, long, _object*)’ at boutcore.cpp:54423:41: boutcore.cpp:54509:64: warning: ‘__pyx_r’ may be used uninitialized [-Wmaybe-uninitialized] 54509 | __pyx_t_1 = ((PyObject *)__pyx_f_8boutcore_f3dFromObj(bracket((__pyx_v_a->cobj[0]), (__pyx_v_b->cobj[0]), __pyx_v_method_, __pyx_v_outloc_))); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 2642, __pyx_L1_error) | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ boutcore.cpp: In function ‘__pyx_pw_8boutcore_45bracket(_object*, _object* const*, long, _object*)’: boutcore.cpp:10585:18: note: ‘__pyx_r’ was declared here 10585 | BRACKET_METHOD __pyx_r; | ^~~~~~~ mpic++ -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include -I/usr/include -I/usr/include -I/usr/include/openmpi-x86_64/petsc -I/usr/include/python3.11 -c boutexception_helper.cxx -o build/temp.linux-x86_64-cpython-311/boutexception_helper.o -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DHAS_PRETTY_FUNCTION -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -DSIGHANDLE -DLOGCOLOR -DBOUT_VERSION_STRING=4.4.2 -DBOUT_VERSION_DOUBLE=4.42 -DBACKTRACE -fPIC -DBOUT_HAS_FFTW -DNCDF4 -DHDF5 -DBOUT_HAS_PETSC -DBOUT_HAS_IDA -DBOUT_HAS_CVODE -DBOUT_HAS_ARKODE -DBOUT_HAS_PVODE -DBOUT_HAS_GETTEXT -DBOUT_LOCALE_PATH=/usr/share/locale -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DHAS_PRETTY_FUNCTION -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -DSIGHANDLE -DLOGCOLOR -DBOUT_VERSION_STRING=4.4.2 -DBOUT_VERSION_DOUBLE=4.42 -DBACKTRACE -fPIC -DBOUT_HAS_FFTW -DNCDF4 -DHDF5 -DBOUT_HAS_PETSC -DBOUT_HAS_IDA -DBOUT_HAS_CVODE -DBOUT_HAS_ARKODE -DBOUT_HAS_PVODE -DBOUT_HAS_GETTEXT -DBOUT_LOCALE_PATH=/usr/share/locale -DBOUT_FLAGS_STRING=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DHAS_PRETTY_FUNCTION -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -DSIGHANDLE -DLOGCOLOR -DBOUT_VERSION_STRING=4.4.2 -DBOUT_VERSION_DOUBLE=4.42 -DBACKTRACE -fPIC -DBOUT_HAS_FFTW -DNCDF4 -DHDF5 -DBOUT_HAS_PETSC -DBOUT_HAS_IDA -DBOUT_HAS_CVODE -DBOUT_HAS_ARKODE -DBOUT_HAS_PVODE -DBOUT_HAS_GETTEXT -DBOUT_LOCALE_PATH=/usr/share/locale -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DHAS_PRETTY_FUNCTION -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -DSIGHANDLE -DLOGCOLOR -DBOUT_VERSION_STRING=4.4.2 -DBOUT_VERSION_DOUBLE=4.42 -DBACKTRACE -fPIC -DBOUT_HAS_FFTW -DNCDF4 -DHDF5 -DBOUT_HAS_PETSC -DBOUT_HAS_IDA -DBOUT_HAS_CVODE -DBOUT_HAS_ARKODE -DBOUT_HAS_PVODE -DBOUT_HAS_GETTEXT -DBOUT_LOCALE_PATH=/usr/share/locale mpic++ -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include -I/usr/include -I/usr/include -I/usr/include/openmpi-x86_64/petsc -I/usr/include/python3.11 -c helper.cxx -o build/temp.linux-x86_64-cpython-311/helper.o -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DHAS_PRETTY_FUNCTION -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -DSIGHANDLE -DLOGCOLOR -DBOUT_VERSION_STRING=4.4.2 -DBOUT_VERSION_DOUBLE=4.42 -DBACKTRACE -fPIC -DBOUT_HAS_FFTW -DNCDF4 -DHDF5 -DBOUT_HAS_PETSC -DBOUT_HAS_IDA -DBOUT_HAS_CVODE -DBOUT_HAS_ARKODE -DBOUT_HAS_PVODE -DBOUT_HAS_GETTEXT -DBOUT_LOCALE_PATH=/usr/share/locale -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DHAS_PRETTY_FUNCTION -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -DSIGHANDLE -DLOGCOLOR -DBOUT_VERSION_STRING=4.4.2 -DBOUT_VERSION_DOUBLE=4.42 -DBACKTRACE -fPIC -DBOUT_HAS_FFTW -DNCDF4 -DHDF5 -DBOUT_HAS_PETSC -DBOUT_HAS_IDA -DBOUT_HAS_CVODE -DBOUT_HAS_ARKODE -DBOUT_HAS_PVODE -DBOUT_HAS_GETTEXT -DBOUT_LOCALE_PATH=/usr/share/locale -DBOUT_FLAGS_STRING=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DHAS_PRETTY_FUNCTION -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -DSIGHANDLE -DLOGCOLOR -DBOUT_VERSION_STRING=4.4.2 -DBOUT_VERSION_DOUBLE=4.42 -DBACKTRACE -fPIC -DBOUT_HAS_FFTW -DNCDF4 -DHDF5 -DBOUT_HAS_PETSC -DBOUT_HAS_IDA -DBOUT_HAS_CVODE -DBOUT_HAS_ARKODE -DBOUT_HAS_PVODE -DBOUT_HAS_GETTEXT -DBOUT_LOCALE_PATH=/usr/share/locale -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DHAS_PRETTY_FUNCTION -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -DSIGHANDLE -DLOGCOLOR -DBOUT_VERSION_STRING=4.4.2 -DBOUT_VERSION_DOUBLE=4.42 -DBACKTRACE -fPIC -DBOUT_HAS_FFTW -DNCDF4 -DHDF5 -DBOUT_HAS_PETSC -DBOUT_HAS_IDA -DBOUT_HAS_CVODE -DBOUT_HAS_ARKODE -DBOUT_HAS_PVODE -DBOUT_HAS_GETTEXT -DBOUT_LOCALE_PATH=/usr/share/locale In file included from /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/field.hxx:41, from /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/field3d.hxx:30, from helper.cxx:1: /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/msg_stack.hxx: In destructor ‘MsgStackItem::~MsgStackItem()’: /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/msg_stack.hxx:147:33: warning: ‘bool std::uncaught_exception()’ is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/field.hxx:34: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ creating build/lib.linux-x86_64-cpython-311 mpic++ -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-x86_64-cpython-311/boutcore.o build/temp.linux-x86_64-cpython-311/boutexception_helper.o build/temp.linux-x86_64-cpython-311/helper.o -L/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/lib -L/usr/lib64 -L/usr/lib64 -L/usr/lib64/openmpi/lib -L/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/lib -L/usr/lib64 -lm -lbout++ -lm -lfftw3 -lnetcdf_c++4 -lnetcdf -lhdf5_hl -lhdf5 -lhdf5_hl -lsz -lz -ldl -lm -lpetsc -lhdf5 -lsundials_ida -lsundials_nvecparallel -lsundials_cvode -lsundials_nvecparallel -lsundials_arkode -lsundials_nvecparallel -lpvode -lpvpre -o build/lib.linux-x86_64-cpython-311/boutcore.cpython-311-x86_64-linux-gnu.so -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes copying build/lib.linux-x86_64-cpython-311/boutcore.cpython-311-x86_64-linux-gnu.so -> cp boutcore*.so .. make[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tools/pylib/_boutcore_build' make[1]: Leaving directory '/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tools/pylib' ++ pwd + export LD_LIBRARY_PATH=/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/lib + LD_LIBRARY_PATH=/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/lib + make -j2 -C manual html make: Entering directory '/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual' cd doxygen && doxygen Doxyfile warning: Tag 'TCL_SUBST' at line 247 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'COLS_IN_ALPHA_INDEX' at line 1056 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'FORMULA_TRANSPARENT' at line 1473 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'LATEX_SOURCE_CODE' at line 1761 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'RTF_SOURCE_CODE' at line 1843 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOCBOOK_PROGRAMLISTING' at line 1941 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'PERL_PATH' at line 2149 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'CLASS_DIAGRAMS' at line 2162 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'MSCGEN_PATH' at line 2171 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOT_FONTNAME' at line 2213 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOT_FONTSIZE' at line 2220 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOT_TRANSPARENT' at line 2439 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: argument 'a4wide' for option PAPER_TYPE is not a valid enum value Using the default: a4! Doxygen version used: 1.9.6 Notice: Output directory 'bout' does not exist. I have created it for you. Searching for include files... Searching for example files... Searching for images... Searching for dot files... Searching for msc files... Searching for dia files... Searching for files to exclude Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/zoidberg Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/wave-slab Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/wave-slab/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/uedge-benchmark Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/uedge-benchmark/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/tokamak-grids Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/tokamak-2fluid Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/tokamak-2fluid/idlTools Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/tokamak-2fluid/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/tokamak-2fluid/d3d-129131 Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/tokamak-2fluid/d3d-119919 Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/subsampling Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/subsampling/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/staggered_grid Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/staggered_grid/test Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/staggered_grid/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/shear-alfven-wave Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/shear-alfven-wave/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/reconnect-2field Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/reconnect-2field/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/preconditioning Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/preconditioning/diffusion-nl Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/IMEX/diffusion-nl/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/preconditioning/wave Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/preconditioning/wave/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/performance Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/performance/tuning_regionblocksize Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/performance/tuning_regionblocksize/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/performance/laplace Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/performance/laplace/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/performance/iterator Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/performance/iterator/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/performance/iterator-offsets Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/performance/iterator-offsets/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/performance/ddz Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/performance/ddz/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/performance/ddy Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/performance/ddy/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/performance/ddx Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/performance/ddx/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/performance/communications Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/performance/bracket Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/performance/bracket/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/performance/arithmetic_3d2d Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/performance/arithmetic_3d2d/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/performance/arithmetic Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/performance/arithmetic/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/orszag-tang Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/orszag-tang/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/monitor Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/monitor/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/monitor-newapi Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/monitor-newapi/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/make-script Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/laplacexy Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/laplacexy/simple Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/laplacexy/simple/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/laplacexy/laplace_perp Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/laplacexy/laplace_perp/torus Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/laplacexy/laplace_perp/square Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/laplacexy/alfven-wave Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/laplacexy/alfven-wave/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/laplacexy/alfven-wave/cbm18 Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/laplace-petsc3d Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/lapd-drift Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/lapd-drift/pisces Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/lapd-drift/lapd Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/lapd-drift/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/jorek-compare Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/jorek-compare/doc Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/jorek-compare/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/invertable_operator Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/invertable_operator/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/hasegawa-wakatani Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/hasegawa-wakatani/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/gyro-gem Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/gyro-gem/doc Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/gyro-gem/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/gravity_reduced Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/gravity_reduced/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/gas-compress Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/gas-compress/sod-shock Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/gas-compress/rayleigh-taylor Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/gas-compress/advect1d Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/finite-volume Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/finite-volume/test Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/finite-volume/test/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/finite-volume/fluid Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/finite-volume/fluid/mms Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/finite-volume/fluid/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/finite-volume/diffusion Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/finite-volume/diffusion/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/fci-wave Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/fci-wave/logn Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/fci-wave/div Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/fci-wave/div-integrate Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/fci-wave-logn Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/fci-wave-logn/expanded Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/fci-wave-logn/div-integrate Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/fci-wave-logn/boundary Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/em-drift Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/em-drift/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/elm-pb Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/elm-pb/test Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/elm-pb/eigen Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/elm-pb/doc Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/elm-pb/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/elm-pb/Python Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/elm-pb/Python/data0 Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/elm-pb/Python/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/eigen-box Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/eigen-box/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/dalf3 Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/dalf3/doc Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/dalf3/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/constraints Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/constraints/drift-wave-constraint Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/IMEX/drift-wave-constraint/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/constraints/laplace-dae Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/constraints/laplace-dae/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/constraints/alfven-wave Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/constraints/alfven-wave/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/constraints/alfven-wave/cbm18 Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/conduction Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/conduction/fromfile Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/conduction/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/conduction-snb Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/conduction-snb/step Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/conduction-snb/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/conducting-wall-mode Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/conducting-wall-mode/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/boutcore Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/boutcore/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/boutcore/blob Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/bout_runners_example Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/bout_runners_example/pre_and_post_processing Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/bout_runners_example/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/bout_runners_example/MMS Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/boundary-conditions Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/boundary-conditions/advection Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/boundary-conditions/advection/upwind Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/boundary-conditions/advection/central-free Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/boundary-conditions/advection/central-free-o3 Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/boundary-conditions/advection/central-dirichlet Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/blob2d Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/blob2d/two_blobs Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/blob2d/delta_10 Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/blob2d/delta_1 Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/blob2d/delta_0.25 Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/blob2d-laplacexz Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/blob2d-laplacexz/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/backtrace Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/backtrace/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/advdiff2 Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/advdiff2/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/advdiff Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/advdiff/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/IMEX Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/IMEX/drift-wave Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/IMEX/drift-wave/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/IMEX/advection-reaction Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/IMEX/advection-reaction/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/IMEX/advection-diffusion Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/IMEX/advection-diffusion/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/6field-simple Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/6field-simple/gfile Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/6field-simple/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/2Dturbulence_multigrid Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/examples/2Dturbulence_multigrid/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tools/ Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tools/vagrant Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tools/tokamak_grids Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tools/tokamak_grids/shifted_circle Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tools/tokamak_grids/pyGridGen Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tools/tokamak_grids/gridgen Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tools/tokamak_grids/gridgen/efit Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tools/tokamak_grids/gridgen/doc Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tools/tokamak_grids/gridgen/bfield Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tools/tokamak_grids/gato Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tools/tokamak_grids/elite Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tools/tokamak_grids/cyclone Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tools/tokamak_grids/coils Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tools/tokamak_grids/coils/surface Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tools/tokamak_grids/all Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tools/slab Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tools/pylib Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tools/pylib/zoidberg Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tools/pylib/post_bout Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tools/pylib/boutconfig Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tools/pylib/bout_runners Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tools/pylib/_boutcore_build Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tools/pylib/_boutcore_build/build Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tools/pylib/_boutcore_build/build/lib.linux-x86_64-cpython-311 Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tools/pylib/_boutcore_build/build/temp.linux-x86_64-cpython-311 Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tools/plasmalib Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tools/pdb2idl Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tools/octave Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tools/numlib Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tools/matlablib Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tools/mathematicalib Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tools/line_tracing_v2 Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tools/line_tracing_v2/doc Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tools/line_tracing_v2/MISC Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tools/line_tracing Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tools/line_tracing/misc Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tools/line_tracing/doc Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tools/idllib Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tools/eigensolver Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tools/eigensolver/GLF_ITG Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tools/cyl_and_helimak_grids Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tools/archiving Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tools/archiving/sdctools Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tools/archiving/sdctools/sdclib Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tools/archiving/pdb2cdf Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tools/archiving/mdsplus Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tools/archiving/mdsplus/manual Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tools/archiving/mdsplus/idl Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tools/archiving/mdsplus/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tools/archiving/dumpsample Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/ Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/workshop2011 Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/user_docs Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/figs Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/figs/zoidberg Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/figs/figure_creators Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/_static Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/_static/css Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/_apidoc Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/doxygen Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/doxygen/bout Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/doxygen/bout/latex Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/doxygen/bout/xml Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/doxygen/bout/html Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/bin/ Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/externalpackages/googletest/ Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/externalpackages/googletest/googletest Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/externalpackages/googletest/googletest/test Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/externalpackages/googletest/googletest/src Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/externalpackages/googletest/googletest/scripts Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/externalpackages/googletest/googletest/scripts/test Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/externalpackages/googletest/googletest/samples Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/externalpackages/googletest/googletest/include Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/externalpackages/googletest/googletest/include/gtest Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/externalpackages/googletest/googletest/include/gtest/internal Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/externalpackages/googletest/googletest/include/gtest/internal/custom Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/externalpackages/googletest/googletest/docs Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/externalpackages/googletest/googletest/cmake Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/externalpackages/googletest/googlemock Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/externalpackages/googletest/googlemock/test Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/externalpackages/googletest/googlemock/src Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/externalpackages/googletest/googlemock/scripts Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/externalpackages/googletest/googlemock/scripts/generator Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/externalpackages/googletest/googlemock/scripts/generator/cpp Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/externalpackages/googletest/googlemock/include Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/externalpackages/googletest/googlemock/include/gmock Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/externalpackages/googletest/googlemock/include/gmock/internal Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/externalpackages/googletest/googlemock/include/gmock/internal/custom Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/externalpackages/googletest/googlemock/docs Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/externalpackages/googletest/googlemock/cmake Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/externalpackages/googletest/docs Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/externalpackages/googletest/docs/reference Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/externalpackages/googletest/docs/assets Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/externalpackages/googletest/docs/assets/css Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/externalpackages/googletest/docs/_sass Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/externalpackages/googletest/docs/_layouts Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/externalpackages/googletest/docs/_data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/externalpackages/googletest/ci Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/ Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/unit Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/unit/sys Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/unit/src Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/unit/solver Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/unit/mesh Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/unit/mesh/parallel Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/unit/mesh/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/unit/invert Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/unit/include Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/unit/include/bout Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/unit/field Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/requirements Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-yupdown Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-yupdown/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-visitor Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-visitor/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-vec Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-vec/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-twistshift Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-twistshift/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-twistshift-staggered Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-twistshift-staggered/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-subdir Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-subdir/fuu Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-subdir/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-subdir/bar Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-stopCheck Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-stopCheck/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-stopCheck-file Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-stopCheck-file/dataSecond Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-stopCheck-file/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-squash Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-squash/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-solver Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-snb Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-snb/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-smooth Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-smooth/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-slepc-solver Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-slepc-solver/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-restarting Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-restarting/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-restart-io_hdf5 Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-restart-io_hdf5/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-restart-io Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-restart-io/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-region-iterator Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-region-iterator/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-petsc_laplace_MAST-grid Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-petsc_laplace_MAST-grid/grids Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-petsc_laplace_MAST-grid/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-petsc_laplace Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-petsc_laplace/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-options-netcdf Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-options-netcdf/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-nonuniform Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-nonuniform/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-naulin-laplace Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-naulin-laplace/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-multigrid_laplace Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-multigrid_laplace/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-laplacexz Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-laplacexz/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-laplacexy Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-laplacexy/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-laplacexy-short Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-laplacexy-short/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-laplace2 Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-laplace2/shoot Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-laplace2/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-laplace Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-laplace/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-io_hdf5 Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-io_hdf5/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-io Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-io/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-invpar Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-invpar/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-invertable-operator Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-invertable-operator/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-interpolate Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-interpolate/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-interchange-instability Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-interchange-instability/data_10 Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-interchange-instability/data_1 Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-integrate Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-integrate/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-initial Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-initial/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-include Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-gyro Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-gyro/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-griddata Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-griddata/screw Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-griddata-yboundary-guards Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-griddata-yboundary-guards/data-singlenull-2 Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-griddata-yboundary-guards/data-singlenull-1 Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-griddata-yboundary-guards/data-singlenull-0 Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-griddata-yboundary-guards/data-doublenull-2 Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-griddata-yboundary-guards/data-doublenull-1 Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-griddata-yboundary-guards/data-doublenull-0 Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-globalfield Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-globalfield/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-fieldgroupComm Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-fieldgroupComm/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-fieldfactory2 Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-fieldfactory2/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-fieldfactory Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-fieldfactory/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-drift-instability Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-drift-instability/doc Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-drift-instability/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-drift-instability-staggered Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-drift-instability-staggered/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-delp2 Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-delp2/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-dataformat Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-dataformat/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-cyclic Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-cyclic/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-coordinates-initialization Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-coordinates-initialization/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-compile-examples Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-compile-examples-petsc Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-command-args Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-collect Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-collect/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-code-style Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-boutcore Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-boutcore/simple-model Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-boutcore/simple-model/mini Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-boutcore/print Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-boutcore/print/test Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-boutcore/mms-ddz Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-boutcore/mms-ddz/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-boutcore/legacy-model Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-boutcore/legacy-model/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-boutcore/collect Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-boutcore/collect/input Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-boutcore/collect-staggered Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-boutcore/collect-staggered/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-bout-override-default-option Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-beuler Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-attribs Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-attribs/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/MMS Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/MMS/wave-1d Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/MMS/wave-1d/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/MMS/wave-1d-y Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/MMS/wave-1d-y/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/MMS/upwinding3 Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/MMS/upwinding3/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/MMS/tokamak Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/MMS/tokamak/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/MMS/time Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/MMS/time/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/MMS/time-petsc Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/MMS/spatial Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/MMS/spatial/fci Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/MMS/spatial/fci/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/MMS/spatial/diffusion Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/MMS/spatial/diffusion/X Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/MMS/spatial/d2dz2 Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/MMS/spatial/d2dz2/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/MMS/spatial/d2dx2 Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/MMS/spatial/d2dx2/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/MMS/spatial/advection Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/MMS/spatial/advection/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/MMS/laplace Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/MMS/laplace/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/MMS/hw Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/MMS/hw/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/MMS/fieldalign Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/MMS/fieldalign/shifted Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/MMS/fieldalign/shear Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/MMS/fieldalign/polshear_shifted Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/MMS/fieldalign/polshear_shear Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/MMS/fieldalign/polshear Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/MMS/fieldalign/orthogonal Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/MMS/fieldalign/nonorthogonal Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/MMS/fieldalign/nonorth_shifted Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/MMS/fieldalign/nonorth_shear Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/MMS/fieldalign/doc Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/MMS/elm-pb Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/MMS/elm-pb/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/MMS/diffusion2 Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/MMS/diffusion2/Z Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/MMS/diffusion2/Y Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/MMS/diffusion2/XYZ Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/MMS/diffusion2/X Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/MMS/diffusion Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/MMS/diffusion/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/MMS/derivatives3 Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/MMS/derivatives3/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/MMS/bracket Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/MMS/bracket/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/MMS/advection Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/MMS/advection/weno3 Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/MMS/advection/weno3/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/MMS/advection/upwind Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/MMS/advection/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/MMS/advection/central Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/MMS/advection/arakawa Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/MMS/GBS Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/MMS/GBS/slab2d Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/MMS/GBS/mms-slab3d Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/MMS/GBS/mms-slab2d Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/MMS/GBS/circle2d Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/MMS/GBS/circle Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/MMS/GBS/blob2d Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/MMS/GBS/beta Searching INPUT for files to process... Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/pvode Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/sys Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/invert Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/options Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/split-rk Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/snes Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/slepc Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rkgeneric Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rkgeneric/impls Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rkgeneric/impls/rkf45 Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rkgeneric/impls/rkf34 Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rkgeneric/impls/rk4simple Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rkgeneric/impls/cashkarp Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rk4 Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rk3-ssp Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/pvode Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/power Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/petsc Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/karniadakis Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/imex-bdf2 Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/ida Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/euler Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/cvode Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/arkode Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/adams_bashforth Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/physics Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/parallel Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/interpolation Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/impls Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/impls/bout Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/data Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/parderiv Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/parderiv/impls Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/parderiv/impls/cyclic Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplacexz Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplacexz/impls Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplacexz/impls/petsc Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplacexz/impls/cyclic Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplacexy Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/spt Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/shoot Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/serial_tri Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/serial_band Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/petsc Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/pdd Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/naulin Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/mumps Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/multigrid Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/cyclic Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4 Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5 Searching for files in directory /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/field Reading and parsing tag files Parsing files Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/boundary_factory.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/boundary_factory.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/boundary_op.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/boundary_op.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/boundary_region.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/boundary_region.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/boundary_standard.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/boundary_standard.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/array.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/array.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/assert.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/assert.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/bout_enum_class.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/bout_enum_class.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/constants.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/constants.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/coordinates.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/coordinates.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/deprecated.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/deprecated.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/deriv_store.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/deriv_store.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/expr.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/expr.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/field_visitor.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/field_visitor.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/fieldgroup.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/fieldgroup.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/format.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/format.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/fv_ops.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/fv_ops.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/generic_factory.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/generic_factory.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/globalfield.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/globalfield.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/griddata.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/griddata.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/index_derivs.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/index_derivs.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/index_derivs_interface.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/index_derivs_interface.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/invert/laplacexy.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/invert/laplacexy.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/invert/laplacexz.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/invert/laplacexz.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/invertable_operator.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/invertable_operator.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/macro_for_each.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/macro_for_each.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/mesh.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/mesh.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/monitor.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/monitor.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/openmpwrap.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/openmpwrap.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/paralleltransform.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/paralleltransform.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/petsclib.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/petsclib.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/physicsmodel.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/physicsmodel.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/region.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/region.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/rkscheme.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/rkscheme.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/rvec.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/rvec.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/scorepwrapper.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/scorepwrapper.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/slepclib.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/slepclib.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/snb.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/snb.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/solver.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/solver.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/solverfactory.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/solverfactory.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/surfaceiter.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/surfaceiter.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/sys/expressionparser.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/sys/expressionparser.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/sys/gettext.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/sys/gettext.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/sys/range.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/sys/range.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/sys/timer.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/sys/timer.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/sys/type_name.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/sys/type_name.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/sys/uncopyable.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/sys/uncopyable.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/sys/uuid.h... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/sys/uuid.h... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/sys/variant.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/sys/variant.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/template_combinations.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/template_combinations.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/traits.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/traits.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout_types.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout_types.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/boutcomm.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/boutcomm.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/boutexception.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/boutexception.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/boutmain.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/boutmain.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/cyclic_reduction.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/cyclic_reduction.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/datafile.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/datafile.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dcomplex.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dcomplex.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/derivs.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/derivs.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/difops.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/difops.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/fft.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/fft.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/field.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/field.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/field2d.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/field2d.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/field3d.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/field3d.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/field_data.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/field_data.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/field_factory.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/field_factory.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/fieldperp.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/fieldperp.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/globals.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/globals.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/gyro_average.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/gyro_average.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/initialprofiles.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/initialprofiles.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/interpolation.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/interpolation.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/interpolation_factory.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/interpolation_factory.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/invert_laplace.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/invert_laplace.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/invert_parderiv.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/invert_parderiv.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/lapack_routines.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/lapack_routines.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/mask.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/mask.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/msg_stack.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/msg_stack.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/multiostream.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/multiostream.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/options.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/options.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/options_netcdf.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/options_netcdf.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/optionsreader.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/optionsreader.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/output.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/output.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/parallel_boundary_op.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/parallel_boundary_op.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/parallel_boundary_region.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/parallel_boundary_region.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/pvode/band.h... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/pvode/band.h... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/pvode/cvdiag.h... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/pvode/cvdiag.h... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/pvode/cvode.h... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/pvode/cvode.h... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/pvode/cvspgmr.h... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/pvode/cvspgmr.h... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/pvode/iterativ.h... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/pvode/iterativ.h... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/pvode/llnlmath.h... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/pvode/llnlmath.h... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/pvode/llnltyps.h... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/pvode/llnltyps.h... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/pvode/nvector.h... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/pvode/nvector.h... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/pvode/pvbbdpre.h... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/pvode/pvbbdpre.h... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/pvode/smalldense.h... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/pvode/smalldense.h... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/pvode/spgmr.h... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/pvode/spgmr.h... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/pvode/vector.h... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/pvode/vector.h... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/smoothing.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/smoothing.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/sourcex.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/sourcex.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/stencils.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/stencils.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/unused.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/unused.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/utils.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/utils.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/vecops.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/vecops.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/vector2d.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/vector2d.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/vector3d.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/vector3d.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/where.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/where.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/bout++-time.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/bout++-time.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/bout++-time.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/bout++-time.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/bout++.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/bout++.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/field/field.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/field/field.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/field/field2d.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/field/field2d.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/field/field3d.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/field/field3d.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/field/field_data.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/field/field_data.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/field/field_factory.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/field/field_factory.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/field/fieldgenerators.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/field/fieldgenerators.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/field/fieldgenerators.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/field/fieldgenerators.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/field/fieldgroup.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/field/fieldgroup.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/field/fieldperp.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/field/fieldperp.cxx... Reading /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/field/gen_fieldops.py... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/field/gen_fieldops.py... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/field/generated_fieldops.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/field/generated_fieldops.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/field/globalfield.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/field/globalfield.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/field/initialprofiles.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/field/initialprofiles.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/field/vecops.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/field/vecops.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/field/vector2d.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/field/vector2d.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/field/vector3d.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/field/vector3d.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/field/where.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/field/where.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/datafile.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/datafile.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/dataformat.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/dataformat.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/formatfactory.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/formatfactory.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/formatfactory.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/formatfactory.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/fft_fftw.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/fft_fftw.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/lapack_routines.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/lapack_routines.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/cyclic/cyclic_laplace.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/cyclic/cyclic_laplace.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/cyclic/cyclic_laplace.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/cyclic/cyclic_laplace.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/multigrid/multigrid_alg.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/multigrid/multigrid_alg.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/multigrid/multigrid_laplace.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/multigrid/multigrid_laplace.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/multigrid/multigrid_laplace.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/multigrid/multigrid_laplace.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/multigrid/multigrid_solver.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/multigrid/multigrid_solver.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/mumps/mumps_laplace.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/mumps/mumps_laplace.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/mumps/mumps_laplace.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/mumps/mumps_laplace.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/naulin/naulin_laplace.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/naulin/naulin_laplace.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/naulin/naulin_laplace.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/naulin/naulin_laplace.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/pdd/pdd.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/pdd/pdd.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/pdd/pdd.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/pdd/pdd.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/petsc/petsc_laplace.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/petsc/petsc_laplace.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/petsc/petsc_laplace.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/petsc/petsc_laplace.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/serial_band/serial_band.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/serial_band/serial_band.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/serial_band/serial_band.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/serial_band/serial_band.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/serial_tri/serial_tri.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/serial_tri/serial_tri.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/serial_tri/serial_tri.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/serial_tri/serial_tri.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/shoot/shoot_laplace.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/shoot/shoot_laplace.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/shoot/shoot_laplace.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/shoot/shoot_laplace.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/spt/spt.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/spt/spt.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/spt/spt.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/spt/spt.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/invert_laplace.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/invert_laplace.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/laplacefactory.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/laplacefactory.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/laplacefactory.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/laplacefactory.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplacexy/laplacexy.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplacexy/laplacexy.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplacexz/impls/cyclic/laplacexz-cyclic.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplacexz/impls/cyclic/laplacexz-cyclic.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplacexz/impls/cyclic/laplacexz-cyclic.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplacexz/impls/cyclic/laplacexz-cyclic.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplacexz/impls/petsc/laplacexz-petsc.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplacexz/impls/petsc/laplacexz-petsc.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplacexz/impls/petsc/laplacexz-petsc.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplacexz/impls/petsc/laplacexz-petsc.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplacexz/laplacexz.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplacexz/laplacexz.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/parderiv/impls/cyclic/cyclic.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/parderiv/impls/cyclic/cyclic.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/parderiv/impls/cyclic/cyclic.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/parderiv/impls/cyclic/cyclic.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/parderiv/invert_parderiv.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/parderiv/invert_parderiv.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/parderiv/parderiv_factory.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/parderiv/parderiv_factory.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/boundary_factory.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/boundary_factory.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/boundary_region.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/boundary_region.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/boundary_standard.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/boundary_standard.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/coordinates.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/coordinates.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/data/gridfromfile.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/data/gridfromfile.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/data/gridfromoptions.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/data/gridfromoptions.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/difops.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/difops.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/fv_ops.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/fv_ops.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/impls/bout/boutmesh.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/impls/bout/boutmesh.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/impls/bout/boutmesh.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/impls/bout/boutmesh.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/index_derivs.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/index_derivs.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/interpolation.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/interpolation.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/interpolation/bilinear.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/interpolation/bilinear.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/interpolation/hermite_spline.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/interpolation/hermite_spline.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/interpolation/interpolation_factory.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/interpolation/interpolation_factory.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/interpolation/lagrange_4pt.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/interpolation/lagrange_4pt.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/interpolation/monotonic_hermite_spline.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/interpolation/monotonic_hermite_spline.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/mesh.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/mesh.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/meshfactory.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/meshfactory.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/meshfactory.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/meshfactory.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/parallel/fci.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/parallel/fci.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/parallel/fci.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/parallel/fci.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/parallel/identity.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/parallel/identity.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/parallel/shiftedmetric.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/parallel/shiftedmetric.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/parallel_boundary_op.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/parallel_boundary_op.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/parallel_boundary_region.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/parallel_boundary_region.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/surfaceiter.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/surfaceiter.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/physics/gyro_average.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/physics/gyro_average.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/physics/physicsmodel.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/physics/physicsmodel.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/physics/smoothing.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/physics/smoothing.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/physics/snb.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/physics/snb.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/physics/sourcex.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/physics/sourcex.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/adams_bashforth/adams_bashforth.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/adams_bashforth/adams_bashforth.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/adams_bashforth/adams_bashforth.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/adams_bashforth/adams_bashforth.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/arkode/arkode.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/arkode/arkode.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/arkode/arkode.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/arkode/arkode.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/cvode/cvode.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/cvode/cvode.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/cvode/cvode.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/cvode/cvode.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/euler/euler.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/euler/euler.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/euler/euler.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/euler/euler.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/ida/ida.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/ida/ida.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/ida/ida.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/ida/ida.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/imex-bdf2/imex-bdf2.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/imex-bdf2/imex-bdf2.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/imex-bdf2/imex-bdf2.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/imex-bdf2/imex-bdf2.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/karniadakis/karniadakis.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/karniadakis/karniadakis.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/karniadakis/karniadakis.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/karniadakis/karniadakis.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/petsc/petsc.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/petsc/petsc.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/petsc/petsc.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/petsc/petsc.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/power/power.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/power/power.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/power/power.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/power/power.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/pvode/pvode.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/pvode/pvode.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/pvode/pvode.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/pvode/pvode.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rk3-ssp/rk3-ssp.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rk3-ssp/rk3-ssp.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rk3-ssp/rk3-ssp.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rk3-ssp/rk3-ssp.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rk4/rk4.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rk4/rk4.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rk4/rk4.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rk4/rk4.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rkgeneric/impls/cashkarp/cashkarp.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rkgeneric/impls/cashkarp/cashkarp.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rkgeneric/impls/cashkarp/cashkarp.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rkgeneric/impls/cashkarp/cashkarp.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rkgeneric/impls/rk4simple/rk4simple.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rkgeneric/impls/rk4simple/rk4simple.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rkgeneric/impls/rk4simple/rk4simple.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rkgeneric/impls/rk4simple/rk4simple.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rkgeneric/impls/rkf34/rkf34.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rkgeneric/impls/rkf34/rkf34.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rkgeneric/impls/rkf34/rkf34.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rkgeneric/impls/rkf34/rkf34.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rkgeneric/impls/rkf45/rkf45.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rkgeneric/impls/rkf45/rkf45.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rkgeneric/impls/rkf45/rkf45.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rkgeneric/impls/rkf45/rkf45.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rkgeneric/rkgeneric.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rkgeneric/rkgeneric.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rkgeneric/rkgeneric.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rkgeneric/rkgeneric.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rkgeneric/rkscheme.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rkgeneric/rkscheme.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rkgeneric/rkschemefactory.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rkgeneric/rkschemefactory.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rkgeneric/rkschemefactory.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rkgeneric/rkschemefactory.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/slepc/slepc.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/slepc/slepc.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/slepc/slepc.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/slepc/slepc.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/snes/snes.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/snes/snes.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/snes/snes.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/snes/snes.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/split-rk/split-rk.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/split-rk/split-rk.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/split-rk/split-rk.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/split-rk/split-rk.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/solver.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/solver.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/solverfactory.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/solverfactory.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/bout_types.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/bout_types.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/boutcomm.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/boutcomm.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/boutexception.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/boutexception.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/derivs.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/derivs.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/expressionparser.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/expressionparser.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/msg_stack.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/msg_stack.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/options.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/options.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/options/optionparser.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/options/optionparser.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/options/options_ini.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/options/options_ini.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/options/options_ini.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/options/options_ini.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/options/options_netcdf.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/options/options_netcdf.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/optionsreader.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/optionsreader.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/output/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/generic_factory.hxx:1: warning: the name 'Base' supplied as the argument in the \file statement is not an input file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.cxx:347: warning: no uniquely matching class member found for const vector< int > NcFormat::getSize(const string &var) Possible candidates: 'virtual const std::vector< int > DataFormat::getSize(const char *var)=0' at line 70 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual const std::vector< int > DataFormat::getSize(const std::string &var)=0' at line 71 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'const std::vector< int > EmptyFormat::getSize(const char *var)' at line 46 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'const std::vector< int > EmptyFormat::getSize(const std::string &var)' at line 47 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'const std::vector< int > H5Format::getSize(const char *var) override' at line 76 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'const std::vector< int > H5Format::getSize(const std::string &var) override' at line 77 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'const std::vector< int > NcFormat::getSize(const char *var) override' at line 77 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'const std::vector< int > NcFormat::getSize(const std::string &var) override' at line 78 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'const std::vector< int > Ncxx4::getSize(const char *var) override' at line 78 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'const std::vector< int > Ncxx4::getSize(const std::string &var) override' at line 79 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'const vector< int > PncFormat::getSize(const char *var) override' at line 75 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'const vector< int > PncFormat::getSize(const std::string &var) override' at line 76 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.cxx:659: warning: no uniquely matching class member found for bool NcFormat::read(int *var, const string &name, int lx, int ly, int lz) Possible candidates: 'bool Datafile::read()' at line 94 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/datafile.hxx 'virtual bool DataFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 89 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 90 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::read(char *var, const char *name, int n=1)=0' at line 91 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::read(char *var, const std::string &name, int n=1)=0' at line 92 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 93 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 94 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'Options bout::experimental::OptionsNetCDF::read()' at line 60 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/options_netcdf.hxx 'void OptionsReader::read(Options *options, const char *file,...)' at line 65 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/optionsreader.hxx 'bool EmptyFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 52 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 54 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 56 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 58 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool H5Format::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 95 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 96 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(char *var, const char *name, int n=1) override' at line 97 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(char *var, const std::string &name, int n=1) override' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(void *var, hid_t hdf5_type, const char *name, int lx=1, int ly=0, int lz=0)' at line 161 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool NcFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read(char *var, const char *name, int n=1) override' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read(char *var, const std::string &name, int n=1) override' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool Ncxx4::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read(char *var, const char *name, int n=1) override' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read(char *var, const std::string &name, int n=1) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 105 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool PncFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 84 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 85 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 86 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 87 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'virtual void OptionParser::read(Options *options, const std::string &filename)=0' at line 56 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/options/optionparser.hxx 'void OptionINI::read(Options *options, const std::string &filename) override' at line 51 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/options/options_ini.hxx /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.cxx:715: warning: no uniquely matching class member found for bool NcFormat::read(char *var, const string &name, int n) Possible candidates: 'bool Datafile::read()' at line 94 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/datafile.hxx 'virtual bool DataFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 89 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 90 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::read(char *var, const char *name, int n=1)=0' at line 91 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::read(char *var, const std::string &name, int n=1)=0' at line 92 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 93 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 94 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'Options bout::experimental::OptionsNetCDF::read()' at line 60 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/options_netcdf.hxx 'void OptionsReader::read(Options *options, const char *file,...)' at line 65 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/optionsreader.hxx 'bool EmptyFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 52 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 54 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 56 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 58 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool H5Format::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 95 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 96 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(char *var, const char *name, int n=1) override' at line 97 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(char *var, const std::string &name, int n=1) override' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(void *var, hid_t hdf5_type, const char *name, int lx=1, int ly=0, int lz=0)' at line 161 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool NcFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read(char *var, const char *name, int n=1) override' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read(char *var, const std::string &name, int n=1) override' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool Ncxx4::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read(char *var, const char *name, int n=1) override' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read(char *var, const std::string &name, int n=1) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 105 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool PncFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 84 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 85 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 86 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 87 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'virtual void OptionParser::read(Options *options, const std::string &filename)=0' at line 56 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/options/optionparser.hxx 'void OptionINI::read(Options *options, const std::string &filename) override' at line 51 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/options/options_ini.hxx /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.cxx:756: warning: no uniquely matching class member found for bool NcFormat::read(double *var, const string &name, int lx, int ly, int lz) Possible candidates: 'bool Datafile::read()' at line 94 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/datafile.hxx 'virtual bool DataFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 89 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 90 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::read(char *var, const char *name, int n=1)=0' at line 91 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::read(char *var, const std::string &name, int n=1)=0' at line 92 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 93 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 94 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'Options bout::experimental::OptionsNetCDF::read()' at line 60 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/options_netcdf.hxx 'void OptionsReader::read(Options *options, const char *file,...)' at line 65 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/optionsreader.hxx 'bool EmptyFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 52 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 54 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 56 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 58 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool H5Format::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 95 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 96 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(char *var, const char *name, int n=1) override' at line 97 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(char *var, const std::string &name, int n=1) override' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(void *var, hid_t hdf5_type, const char *name, int lx=1, int ly=0, int lz=0)' at line 161 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool NcFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read(char *var, const char *name, int n=1) override' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read(char *var, const std::string &name, int n=1) override' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool Ncxx4::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read(char *var, const char *name, int n=1) override' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read(char *var, const std::string &name, int n=1) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 105 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool PncFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 84 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 85 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 86 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 87 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'virtual void OptionParser::read(Options *options, const std::string &filename)=0' at line 56 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/options/optionparser.hxx 'void OptionINI::read(Options *options, const std::string &filename) override' at line 51 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/options/options_ini.hxx /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.cxx:834: warning: no uniquely matching class member found for bool NcFormat::write(int *var, const string &name, int lx, int ly, int lz) Possible candidates: 'bool Datafile::write()' at line 95 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/datafile.hxx 'bool Datafile::write(const char *filename,...) const' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/datafile.hxx 'virtual bool DataFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 97 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::write(char *var, const char *name, int n=1)=0' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::write(char *var, const std::string &name, int n=1)=0' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'void bout::experimental::OptionsNetCDF::write(const Options &options)' at line 63 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/options_netcdf.hxx 'void OptionsReader::write(Options *options, const char *file,...)' at line 72 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/optionsreader.hxx 'virtual void Output::write(const char *string,...)' at line 92 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/output.hxx 'void DummyOutput::write(const char *str,...) override' at line 133 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/output.hxx 'void ConditionalOutput::write(const char *str,...) override' at line 162 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/output.hxx 'bool EmptyFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 61 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 63 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 65 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 67 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool H5Format::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(char *var, const char *name, int n=1) override' at line 105 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(char *var, const std::string &name, int n=1) override' at line 106 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 107 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(void *var, hid_t mem_hdf5_type, const char *name, int lx=0, int ly=0, int lz=0)' at line 162 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool NcFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 107 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write(char *var, const char *name, int n=1) override' at line 109 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write(char *var, const std::string &name, int n=1) override' at line 110 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 111 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 112 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool Ncxx4::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 109 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write(char *var, const char *name, int n=1) override' at line 110 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write(char *var, const std::string &name, int n=1) override' at line 111 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 112 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 113 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool PncFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 89 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 90 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 91 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 92 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'virtual void OptionParser::write(Options *options, const std::string &filename)=0' at line 59 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/options/optionparser.hxx 'void OptionINI::write(Options *options, const std::string &filename) override' at line 54 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/options/options_ini.hxx /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.cxx:879: warning: no uniquely matching class member found for bool NcFormat::write(char *var, const string &name, int n) Possible candidates: 'bool Datafile::write()' at line 95 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/datafile.hxx 'bool Datafile::write(const char *filename,...) const' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/datafile.hxx 'virtual bool DataFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 97 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::write(char *var, const char *name, int n=1)=0' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::write(char *var, const std::string &name, int n=1)=0' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'void bout::experimental::OptionsNetCDF::write(const Options &options)' at line 63 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/options_netcdf.hxx 'void OptionsReader::write(Options *options, const char *file,...)' at line 72 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/optionsreader.hxx 'virtual void Output::write(const char *string,...)' at line 92 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/output.hxx 'void DummyOutput::write(const char *str,...) override' at line 133 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/output.hxx 'void ConditionalOutput::write(const char *str,...) override' at line 162 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/output.hxx 'bool EmptyFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 61 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 63 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 65 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 67 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool H5Format::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(char *var, const char *name, int n=1) override' at line 105 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(char *var, const std::string &name, int n=1) override' at line 106 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 107 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(void *var, hid_t mem_hdf5_type, const char *name, int lx=0, int ly=0, int lz=0)' at line 162 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool NcFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 107 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write(char *var, const char *name, int n=1) override' at line 109 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write(char *var, const std::string &name, int n=1) override' at line 110 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 111 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 112 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool Ncxx4::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 109 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write(char *var, const char *name, int n=1) override' at line 110 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write(char *var, const std::string &name, int n=1) override' at line 111 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 112 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 113 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool PncFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 89 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 90 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 91 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 92 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'virtual void OptionParser::write(Options *options, const std::string &filename)=0' at line 59 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/options/optionparser.hxx 'void OptionINI::write(Options *options, const std::string &filename) override' at line 54 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/options/options_ini.hxx /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.cxx:941: warning: no uniquely matching class member found for bool NcFormat::write(double *var, const string &name, int lx, int ly, int lz) Possible candidates: 'bool Datafile::write()' at line 95 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/datafile.hxx 'bool Datafile::write(const char *filename,...) const' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/datafile.hxx 'virtual bool DataFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 97 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::write(char *var, const char *name, int n=1)=0' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::write(char *var, const std::string &name, int n=1)=0' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'void bout::experimental::OptionsNetCDF::write(const Options &options)' at line 63 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/options_netcdf.hxx 'void OptionsReader::write(Options *options, const char *file,...)' at line 72 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/optionsreader.hxx 'virtual void Output::write(const char *string,...)' at line 92 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/output.hxx 'void DummyOutput::write(const char *str,...) override' at line 133 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/output.hxx 'void ConditionalOutput::write(const char *str,...) override' at line 162 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/output.hxx 'bool EmptyFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 61 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 63 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 65 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 67 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool H5Format::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(char *var, const char *name, int n=1) override' at line 105 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(char *var, const std::string &name, int n=1) override' at line 106 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 107 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(void *var, hid_t mem_hdf5_type, const char *name, int lx=0, int ly=0, int lz=0)' at line 162 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool NcFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 107 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write(char *var, const char *name, int n=1) override' at line 109 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write(char *var, const std::string &name, int n=1) override' at line 110 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 111 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 112 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool Ncxx4::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 109 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write(char *var, const char *name, int n=1) override' at line 110 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write(char *var, const std::string &name, int n=1) override' at line 111 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 112 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 113 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool PncFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 89 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 90 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 91 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 92 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'virtual void OptionParser::write(Options *options, const std::string &filename)=0' at line 59 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/options/optionparser.hxx 'void OptionINI::write(Options *options, const std::string &filename) override' at line 54 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/options/options_ini.hxx /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.cxx:1043: warning: no uniquely matching class member found for bool NcFormat::read_rec(int *var, const string &name, int lx, int ly, int lz) Possible candidates: 'virtual bool DataFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 107 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::read_rec(char *var, const char *name, int n=1)=0' at line 109 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::read_rec(char *var, const std::string &name, int n=1)=0' at line 110 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 111 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 112 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'bool EmptyFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 70 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 72 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 74 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 76 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool H5Format::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 113 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 114 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(char *var, const char *name, int n=1) override' at line 115 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(char *var, const std::string &name, int n=1) override' at line 116 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 117 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(void *var, hid_t hdf5_type, const char *name, int lx=1, int ly=0, int lz=0)' at line 163 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool NcFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 117 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read_rec(char *var, const char *name, int n=1) override' at line 119 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read_rec(char *var, const std::string &name, int n=1) override' at line 120 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 121 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 122 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool Ncxx4::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 119 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read_rec(char *var, const char *name, int n=1) override' at line 120 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read_rec(char *var, const std::string &name, int n=1) override' at line 121 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 122 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 123 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool PncFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 96 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 97 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.cxx:1089: warning: no uniquely matching class member found for bool NcFormat::read_rec(char *var, const string &name, int n) Possible candidates: 'virtual bool DataFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 107 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::read_rec(char *var, const char *name, int n=1)=0' at line 109 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::read_rec(char *var, const std::string &name, int n=1)=0' at line 110 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 111 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 112 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'bool EmptyFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 70 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 72 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 74 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 76 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool H5Format::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 113 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 114 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(char *var, const char *name, int n=1) override' at line 115 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(char *var, const std::string &name, int n=1) override' at line 116 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 117 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(void *var, hid_t hdf5_type, const char *name, int lx=1, int ly=0, int lz=0)' at line 163 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool NcFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 117 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read_rec(char *var, const char *name, int n=1) override' at line 119 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read_rec(char *var, const std::string &name, int n=1) override' at line 120 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 121 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 122 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool Ncxx4::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 119 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read_rec(char *var, const char *name, int n=1) override' at line 120 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read_rec(char *var, const std::string &name, int n=1) override' at line 121 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 122 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 123 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool PncFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 96 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 97 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.cxx:1130: warning: no uniquely matching class member found for bool NcFormat::read_rec(double *var, const string &name, int lx, int ly, int lz) Possible candidates: 'virtual bool DataFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 107 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::read_rec(char *var, const char *name, int n=1)=0' at line 109 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::read_rec(char *var, const std::string &name, int n=1)=0' at line 110 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 111 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 112 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'bool EmptyFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 70 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 72 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 74 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 76 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool H5Format::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 113 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 114 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(char *var, const char *name, int n=1) override' at line 115 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(char *var, const std::string &name, int n=1) override' at line 116 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 117 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(void *var, hid_t hdf5_type, const char *name, int lx=1, int ly=0, int lz=0)' at line 163 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool NcFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 117 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read_rec(char *var, const char *name, int n=1) override' at line 119 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read_rec(char *var, const std::string &name, int n=1) override' at line 120 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 121 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 122 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool Ncxx4::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 119 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read_rec(char *var, const char *name, int n=1) override' at line 120 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read_rec(char *var, const std::string &name, int n=1) override' at line 121 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 122 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 123 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool PncFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 96 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 97 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.cxx:1212: warning: no uniquely matching class member found for bool NcFormat::write_rec(int *var, const string &name, int lx, int ly, int lz) Possible candidates: 'virtual bool DataFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 115 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 116 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::write_rec(char *var, const char *name, int n=1)=0' at line 117 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::write_rec(char *var, const std::string &name, int n=1)=0' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 119 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 120 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'bool EmptyFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 79 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 81 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 83 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 85 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool H5Format::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 121 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 122 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(char *var, const char *name, int n=1) override' at line 123 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(char *var, const std::string &name, int n=1) override' at line 124 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 125 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 126 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(void *var, hid_t mem_hdf5_type, const char *name, int lx=0, int ly=0, int lz=0)' at line 164 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool NcFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 125 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 126 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write_rec(char *var, const char *name, int n=1) override' at line 127 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write_rec(char *var, const std::string &name, int n=1) override' at line 128 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 129 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 130 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool Ncxx4::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 126 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 127 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write_rec(char *var, const char *name, int n=1) override' at line 128 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write_rec(char *var, const std::string &name, int n=1) override' at line 129 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 130 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 131 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool PncFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.cxx:1260: warning: no uniquely matching class member found for bool NcFormat::write_rec(char *var, const string &name, int n) Possible candidates: 'virtual bool DataFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 115 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 116 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::write_rec(char *var, const char *name, int n=1)=0' at line 117 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::write_rec(char *var, const std::string &name, int n=1)=0' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 119 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 120 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'bool EmptyFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 79 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 81 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 83 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 85 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool H5Format::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 121 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 122 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(char *var, const char *name, int n=1) override' at line 123 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(char *var, const std::string &name, int n=1) override' at line 124 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 125 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 126 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(void *var, hid_t mem_hdf5_type, const char *name, int lx=0, int ly=0, int lz=0)' at line 164 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool NcFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 125 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 126 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write_rec(char *var, const char *name, int n=1) override' at line 127 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write_rec(char *var, const std::string &name, int n=1) override' at line 128 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 129 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 130 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool Ncxx4::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 126 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 127 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write_rec(char *var, const char *name, int n=1) override' at line 128 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write_rec(char *var, const std::string &name, int n=1) override' at line 129 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 130 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 131 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool PncFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.cxx:1335: warning: no uniquely matching class member found for bool NcFormat::write_rec(double *var, const string &name, int lx, int ly, int lz) Possible candidates: 'virtual bool DataFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 115 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 116 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::write_rec(char *var, const char *name, int n=1)=0' at line 117 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::write_rec(char *var, const std::string &name, int n=1)=0' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 119 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 120 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'bool EmptyFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 79 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 81 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 83 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 85 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool H5Format::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 121 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 122 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(char *var, const char *name, int n=1) override' at line 123 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(char *var, const std::string &name, int n=1) override' at line 124 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 125 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 126 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(void *var, hid_t mem_hdf5_type, const char *name, int lx=0, int ly=0, int lz=0)' at line 164 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool NcFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 125 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 126 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write_rec(char *var, const char *name, int n=1) override' at line 127 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write_rec(char *var, const std::string &name, int n=1) override' at line 128 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 129 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 130 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool Ncxx4::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 126 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 127 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write_rec(char *var, const char *name, int n=1) override' at line 128 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write_rec(char *var, const std::string &name, int n=1) override' at line 129 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 130 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 131 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool PncFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.cxx:295: warning: no uniquely matching class member found for bool PncFormat::read(int *var, const string &name, int lx, int ly, int lz) Possible candidates: 'bool Datafile::read()' at line 94 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/datafile.hxx 'virtual bool DataFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 89 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 90 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::read(char *var, const char *name, int n=1)=0' at line 91 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::read(char *var, const std::string &name, int n=1)=0' at line 92 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 93 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 94 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'Options bout::experimental::OptionsNetCDF::read()' at line 60 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/options_netcdf.hxx 'void OptionsReader::read(Options *options, const char *file,...)' at line 65 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/optionsreader.hxx 'bool EmptyFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 52 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 54 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 56 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 58 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool H5Format::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 95 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 96 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(char *var, const char *name, int n=1) override' at line 97 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(char *var, const std::string &name, int n=1) override' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(void *var, hid_t hdf5_type, const char *name, int lx=1, int ly=0, int lz=0)' at line 161 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool NcFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read(char *var, const char *name, int n=1) override' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read(char *var, const std::string &name, int n=1) override' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool Ncxx4::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read(char *var, const char *name, int n=1) override' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read(char *var, const std::string &name, int n=1) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 105 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool PncFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 84 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 85 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 86 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 87 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'virtual void OptionParser::read(Options *options, const std::string &filename)=0' at line 56 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/options/optionparser.hxx 'void OptionINI::read(Options *options, const std::string &filename) override' at line 51 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/options/options_ini.hxx /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.cxx:354: warning: no uniquely matching class member found for bool PncFormat::read(double *var, const string &name, int lx, int ly, int lz) Possible candidates: 'bool Datafile::read()' at line 94 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/datafile.hxx 'virtual bool DataFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 89 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 90 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::read(char *var, const char *name, int n=1)=0' at line 91 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::read(char *var, const std::string &name, int n=1)=0' at line 92 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 93 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 94 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'Options bout::experimental::OptionsNetCDF::read()' at line 60 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/options_netcdf.hxx 'void OptionsReader::read(Options *options, const char *file,...)' at line 65 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/optionsreader.hxx 'bool EmptyFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 52 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 54 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 56 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 58 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool H5Format::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 95 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 96 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(char *var, const char *name, int n=1) override' at line 97 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(char *var, const std::string &name, int n=1) override' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read(void *var, hid_t hdf5_type, const char *name, int lx=1, int ly=0, int lz=0)' at line 161 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool NcFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read(char *var, const char *name, int n=1) override' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read(char *var, const std::string &name, int n=1) override' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool Ncxx4::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read(char *var, const char *name, int n=1) override' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read(char *var, const std::string &name, int n=1) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 105 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool PncFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 84 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 85 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 86 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 87 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'virtual void OptionParser::read(Options *options, const std::string &filename)=0' at line 56 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/options/optionparser.hxx 'void OptionINI::read(Options *options, const std::string &filename) override' at line 51 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/options/options_ini.hxx /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.cxx:402: warning: no uniquely matching class member found for bool PncFormat::write(int *var, const string &name, int lx, int ly, int lz) Possible candidates: 'bool Datafile::write()' at line 95 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/datafile.hxx 'bool Datafile::write(const char *filename,...) const' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/datafile.hxx 'virtual bool DataFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 97 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::write(char *var, const char *name, int n=1)=0' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::write(char *var, const std::string &name, int n=1)=0' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'void bout::experimental::OptionsNetCDF::write(const Options &options)' at line 63 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/options_netcdf.hxx 'void OptionsReader::write(Options *options, const char *file,...)' at line 72 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/optionsreader.hxx 'virtual void Output::write(const char *string,...)' at line 92 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/output.hxx 'void DummyOutput::write(const char *str,...) override' at line 133 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/output.hxx 'void ConditionalOutput::write(const char *str,...) override' at line 162 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/output.hxx 'bool EmptyFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 61 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 63 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 65 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 67 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool H5Format::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(char *var, const char *name, int n=1) override' at line 105 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(char *var, const std::string &name, int n=1) override' at line 106 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 107 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(void *var, hid_t mem_hdf5_type, const char *name, int lx=0, int ly=0, int lz=0)' at line 162 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool NcFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 107 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write(char *var, const char *name, int n=1) override' at line 109 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write(char *var, const std::string &name, int n=1) override' at line 110 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 111 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 112 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool Ncxx4::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 109 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write(char *var, const char *name, int n=1) override' at line 110 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write(char *var, const std::string &name, int n=1) override' at line 111 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 112 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 113 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool PncFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 89 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 90 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 91 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 92 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'virtual void OptionParser::write(Options *options, const std::string &filename)=0' at line 59 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/options/optionparser.hxx 'void OptionINI::write(Options *options, const std::string &filename) override' at line 54 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/options/options_ini.hxx /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.cxx:488: warning: no uniquely matching class member found for bool PncFormat::write(double *var, const string &name, int lx, int ly, int lz) Possible candidates: 'bool Datafile::write()' at line 95 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/datafile.hxx 'bool Datafile::write(const char *filename,...) const' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/datafile.hxx 'virtual bool DataFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 97 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::write(char *var, const char *name, int n=1)=0' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::write(char *var, const std::string &name, int n=1)=0' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'void bout::experimental::OptionsNetCDF::write(const Options &options)' at line 63 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/options_netcdf.hxx 'void OptionsReader::write(Options *options, const char *file,...)' at line 72 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/optionsreader.hxx 'virtual void Output::write(const char *string,...)' at line 92 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/output.hxx 'void DummyOutput::write(const char *str,...) override' at line 133 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/output.hxx 'void ConditionalOutput::write(const char *str,...) override' at line 162 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/output.hxx 'bool EmptyFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 61 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 63 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 65 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 67 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool H5Format::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(char *var, const char *name, int n=1) override' at line 105 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(char *var, const std::string &name, int n=1) override' at line 106 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 107 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write(void *var, hid_t mem_hdf5_type, const char *name, int lx=0, int ly=0, int lz=0)' at line 162 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool NcFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 107 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write(char *var, const char *name, int n=1) override' at line 109 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write(char *var, const std::string &name, int n=1) override' at line 110 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 111 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 112 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool Ncxx4::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 109 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write(char *var, const char *name, int n=1) override' at line 110 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write(char *var, const std::string &name, int n=1) override' at line 111 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 112 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 113 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool PncFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 89 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 90 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 91 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 92 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'virtual void OptionParser::write(Options *options, const std::string &filename)=0' at line 59 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/options/optionparser.hxx 'void OptionINI::write(Options *options, const std::string &filename) override' at line 54 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/options/options_ini.hxx /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.cxx:524: warning: no uniquely matching class member found for bool PncFormat::read_rec(int *var, const string &name, int lx, int ly, int lz) Possible candidates: 'virtual bool DataFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 107 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::read_rec(char *var, const char *name, int n=1)=0' at line 109 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::read_rec(char *var, const std::string &name, int n=1)=0' at line 110 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 111 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 112 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'bool EmptyFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 70 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 72 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 74 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 76 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool H5Format::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 113 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 114 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(char *var, const char *name, int n=1) override' at line 115 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(char *var, const std::string &name, int n=1) override' at line 116 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 117 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(void *var, hid_t hdf5_type, const char *name, int lx=1, int ly=0, int lz=0)' at line 163 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool NcFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 117 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read_rec(char *var, const char *name, int n=1) override' at line 119 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read_rec(char *var, const std::string &name, int n=1) override' at line 120 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 121 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 122 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool Ncxx4::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 119 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read_rec(char *var, const char *name, int n=1) override' at line 120 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read_rec(char *var, const std::string &name, int n=1) override' at line 121 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 122 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 123 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool PncFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 96 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 97 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.cxx:556: warning: no uniquely matching class member found for bool PncFormat::read_rec(double *var, const string &name, int lx, int ly, int lz) Possible candidates: 'virtual bool DataFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 107 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::read_rec(char *var, const char *name, int n=1)=0' at line 109 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::read_rec(char *var, const std::string &name, int n=1)=0' at line 110 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 111 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 112 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'bool EmptyFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 70 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 72 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 74 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 76 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool H5Format::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 113 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 114 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(char *var, const char *name, int n=1) override' at line 115 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(char *var, const std::string &name, int n=1) override' at line 116 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 117 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::read_rec(void *var, hid_t hdf5_type, const char *name, int lx=1, int ly=0, int lz=0)' at line 163 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool NcFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 117 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read_rec(char *var, const char *name, int n=1) override' at line 119 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read_rec(char *var, const std::string &name, int n=1) override' at line 120 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 121 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 122 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool Ncxx4::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 119 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read_rec(char *var, const char *name, int n=1) override' at line 120 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read_rec(char *var, const std::string &name, int n=1) override' at line 121 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 122 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 123 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool PncFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 96 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 97 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.cxx:605: warning: no uniquely matching class member found for bool PncFormat::write_rec(int *var, const string &name, int lx, int ly, int lz) Possible candidates: 'virtual bool DataFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 115 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 116 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::write_rec(char *var, const char *name, int n=1)=0' at line 117 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::write_rec(char *var, const std::string &name, int n=1)=0' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 119 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 120 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'bool EmptyFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 79 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 81 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 83 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 85 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool H5Format::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 121 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 122 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(char *var, const char *name, int n=1) override' at line 123 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(char *var, const std::string &name, int n=1) override' at line 124 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 125 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 126 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(void *var, hid_t mem_hdf5_type, const char *name, int lx=0, int ly=0, int lz=0)' at line 164 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool NcFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 125 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 126 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write_rec(char *var, const char *name, int n=1) override' at line 127 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write_rec(char *var, const std::string &name, int n=1) override' at line 128 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 129 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 130 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool Ncxx4::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 126 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 127 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write_rec(char *var, const char *name, int n=1) override' at line 128 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write_rec(char *var, const std::string &name, int n=1) override' at line 129 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 130 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 131 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool PncFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.cxx:681: warning: no uniquely matching class member found for bool PncFormat::write_rec(double *var, const string &name, int lx, int ly, int lz) Possible candidates: 'virtual bool DataFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 115 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 116 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::write_rec(char *var, const char *name, int n=1)=0' at line 117 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::write_rec(char *var, const std::string &name, int n=1)=0' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 119 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'virtual bool DataFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 120 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx 'bool EmptyFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 79 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 81 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 83 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool EmptyFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 85 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx 'bool H5Format::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 121 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 122 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(char *var, const char *name, int n=1) override' at line 123 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(char *var, const std::string &name, int n=1) override' at line 124 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 125 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 126 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool H5Format::write_rec(void *var, hid_t mem_hdf5_type, const char *name, int lx=0, int ly=0, int lz=0)' at line 164 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx 'bool NcFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 125 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 126 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write_rec(char *var, const char *name, int n=1) override' at line 127 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write_rec(char *var, const std::string &name, int n=1) override' at line 128 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 129 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 130 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool Ncxx4::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 126 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 127 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write_rec(char *var, const char *name, int n=1) override' at line 128 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write_rec(char *var, const std::string &name, int n=1) override' at line 129 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 130 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool Ncxx4::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 131 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx 'bool PncFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/boundary_factory.cxx:80: warning: no uniquely matching class member found for BoundaryOpBase * BoundaryFactory::create(const string &name, BoundaryRegionBase *region) Possible candidates: 'BoundaryOpBase * BoundaryFactory::create(const std::string &name, BoundaryRegionBase *region)' at line 70 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/boundary_factory.hxx 'BoundaryOpBase * BoundaryFactory::create(const char *name, BoundaryRegionBase *region)' at line 71 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/boundary_factory.hxx 'template < Args > BaseType * Factory< BaseType, TypeCreator >::create(const std::string &name, Args &&... args)' at line 57 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/generic_factory.hxx 'static LaplaceXZ * LaplaceXZ::create(Mesh *m=nullptr, Options *opt=nullptr, const CELL_LOC loc=CELL_CENTRE)' at line 51 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/invert/laplacexz.hxx 'static Mesh * Mesh::create(GridDataSource *source, Options *opt=nullptr)' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/mesh.hxx 'static Mesh * Mesh::create(Options *opt=nullptr)' at line 110 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/mesh.hxx 'static Solver * Solver::create(Options *opts=nullptr)' at line 308 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/solver.hxx 'static Solver * Solver::create(const SolverType &type, Options *opts=nullptr)' at line 311 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/solver.hxx 'Interpolation * InterpolationFactory::create(Mesh *mesh)' at line 49 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/interpolation_factory.hxx 'Interpolation * InterpolationFactory::create(Options *options=nullptr, Mesh *mesh=nullptr)' at line 50 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/interpolation_factory.hxx 'Interpolation * InterpolationFactory::create(const std::string &name, Options *options=nullptr, Mesh *mesh=nullptr)' at line 59 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/interpolation_factory.hxx 'static Laplacian * Laplacian::create(Options *opt=nullptr, const CELL_LOC loc=CELL_CENTRE, Mesh *mesh_in=nullptr)' at line 212 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/invert_laplace.hxx /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/boundary_factory.cxx:210: warning: no matching class member found for BoundaryOpBase * BoundaryFactory::createFromOptions(const string &varname, BoundaryRegionBase *region) Possible candidates: 'BoundaryOpBase * BoundaryFactory::createFromOptions(const std::string &varname, BoundaryRegionBase *region)' at line 74 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/boundary_factory.hxx 'BoundaryOpBase * BoundaryFactory::createFromOptions(const char *varname, BoundaryRegionBase *region)' at line 75 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/boundary_factory.hxx /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/boundary_factory.cxx:313: warning: no uniquely matching class member found for void BoundaryFactory::add(BoundaryOp *bop, const string &name) Possible candidates: 'void BoundaryFactory::add(BoundaryOp *bop, const std::string &name)' at line 81 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/boundary_factory.hxx 'void BoundaryFactory::add(BoundaryOp *bop, const char *name)' at line 88 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/boundary_factory.hxx 'void BoundaryFactory::add(BoundaryOpPar *bop, const std::string &name)' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/boundary_factory.hxx 'void BoundaryFactory::add(BoundaryOpPar *bop, const char *name)' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/boundary_factory.hxx 'void FieldGroup::add(const FieldGroup &other)' at line 70 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/fieldgroup.hxx 'void FieldGroup::add(FieldData &f)' at line 86 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/fieldgroup.hxx 'void FieldGroup::add(Field3D &f)' at line 95 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/fieldgroup.hxx 'void FieldGroup::add(Vector2D &v)' at line 105 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/fieldgroup.hxx 'void FieldGroup::add(Vector3D &v)' at line 116 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/fieldgroup.hxx 'template < Ts > void FieldGroup::add(FieldData &t, Ts &... ts)' at line 131 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/fieldgroup.hxx 'template < Ts > void FieldGroup::add(Field3D &t, Ts &... ts)' at line 137 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/fieldgroup.hxx 'template < Ts > void FieldGroup::add(Vector3D &t, Ts &... ts)' at line 143 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/fieldgroup.hxx 'template < Ts > void FieldGroup::add(Vector2D &t, Ts &... ts)' at line 149 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/fieldgroup.hxx 'virtual bool Factory< BaseType, TypeCreator >::add(const std::string &name, TypeCreator creator)' at line 42 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/generic_factory.hxx 'virtual void Solver::add(Field2D &v, const std::string &name, const std::string &description="")' at line 236 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/solver.hxx 'virtual void Solver::add(Field3D &v, const std::string &name, const std::string &description="")' at line 237 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/solver.hxx 'virtual void Solver::add(Vector2D &v, const std::string &name, const std::string &description="")' at line 238 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/solver.hxx 'virtual void Solver::add(Vector3D &v, const std::string &name, const std::string &description="")' at line 239 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/solver.hxx 'void Datafile::add(int &i, const char *name, bool save_repeat=false, const std::string &description="")' at line 73 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/datafile.hxx 'void Datafile::add(std::vector< int > &ivec, const char *name, bool save_repeat=false, const std::string &description="")' at line 75 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/datafile.hxx 'void Datafile::add(std::string &s, const char *name, bool save_repeat=false, const std::string &description="")' at line 77 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/datafile.hxx 'void Datafile::add(BoutReal &r, const char *name, bool save_repeat=false, const std::string &description="")' at line 79 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/datafile.hxx 'void Datafile::add(bool &b, const char *name, bool save_repeat=false, const std::string &description="")' at line 81 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/datafile.hxx 'void Datafile::add(Field2D &f, const char *name, bool save_repeat=false, const std::string &description="")' at line 83 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/datafile.hxx 'void Datafile::add(Field3D &f, const char *name, bool save_repeat=false, const std::string &description="")' at line 85 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/datafile.hxx 'void Datafile::add(FieldPerp &f, const char *name, bool save_repeat=false, const std::string &description="")' at line 87 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/datafile.hxx 'void Datafile::add(Vector2D &f, const char *name, bool save_repeat=false, const std::string &description="")' at line 89 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/datafile.hxx 'void Datafile::add(Vector3D &f, const char *name, bool save_repeat=false, const std::string &description="")' at line 91 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/datafile.hxx 'void InterpolationFactory::add(CreateInterpCallback interp, const std::string &name)' at line 63 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/interpolation_factory.hxx 'void multioutbuf< char_type, traits >::add(std::basic_ostream< char_type, traits > &str)' at line 19 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/multiostream.hxx 'void multiostream< char_type, traits >::add(std::basic_ostream< char_type, traits > &str)' at line 84 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/multiostream.hxx 'void Output::add(std::basic_ostream< char, _Tr > &str)' at line 105 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/output.hxx 'void SlepcSolver::add(Field2D &v, const std::string &name, const std::string &description="") override' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/slepc/slepc.hxx 'void SlepcSolver::add(Field3D &v, const std::string &name, const std::string &description="") override' at line 106 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/slepc/slepc.hxx 'void SlepcSolver::add(Vector2D &v, const std::string &name, const std::string &description="") override' at line 113 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/slepc/slepc.hxx 'void SlepcSolver::add(Vector3D &v, const std::string &name, const std::string &description="") override' at line 120 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/slepc/slepc.hxx /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/boundary_factory.cxx:326: warning: no uniquely matching class member found for void BoundaryFactory::add(BoundaryOpPar *bop, const string &name) Possible candidates: 'void BoundaryFactory::add(BoundaryOp *bop, const std::string &name)' at line 81 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/boundary_factory.hxx 'void BoundaryFactory::add(BoundaryOp *bop, const char *name)' at line 88 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/boundary_factory.hxx 'void BoundaryFactory::add(BoundaryOpPar *bop, const std::string &name)' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/boundary_factory.hxx 'void BoundaryFactory::add(BoundaryOpPar *bop, const char *name)' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/boundary_factory.hxx 'void FieldGroup::add(const FieldGroup &other)' at line 70 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/fieldgroup.hxx 'void FieldGroup::add(FieldData &f)' at line 86 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/fieldgroup.hxx 'void FieldGroup::add(Field3D &f)' at line 95 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/fieldgroup.hxx 'void FieldGroup::add(Vector2D &v)' at line 105 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/fieldgroup.hxx 'void FieldGroup::add(Vector3D &v)' at line 116 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/fieldgroup.hxx 'template < Ts > void FieldGroup::add(FieldData &t, Ts &... ts)' at line 131 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/fieldgroup.hxx 'template < Ts > void FieldGroup::add(Field3D &t, Ts &... ts)' at line 137 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/fieldgroup.hxx 'template < Ts > void FieldGroup::add(Vector3D &t, Ts &... ts)' at line 143 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/fieldgroup.hxx 'template < Ts > void FieldGroup::add(Vector2D &t, Ts &... ts)' at line 149 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/fieldgroup.hxx 'virtual bool Factory< BaseType, TypeCreator >::add(const std::string &name, TypeCreator creator)' at line 42 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/generic_factory.hxx 'virtual void Solver::add(Field2D &v, const std::string &name, const std::string &description="")' at line 236 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/solver.hxx 'virtual void Solver::add(Field3D &v, const std::string &name, const std::string &description="")' at line 237 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/solver.hxx 'virtual void Solver::add(Vector2D &v, const std::string &name, const std::string &description="")' at line 238 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/solver.hxx 'virtual void Solver::add(Vector3D &v, const std::string &name, const std::string &description="")' at line 239 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/solver.hxx 'void Datafile::add(int &i, const char *name, bool save_repeat=false, const std::string &description="")' at line 73 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/datafile.hxx 'void Datafile::add(std::vector< int > &ivec, const char *name, bool save_repeat=false, const std::string &description="")' at line 75 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/datafile.hxx 'void Datafile::add(std::string &s, const char *name, bool save_repeat=false, const std::string &description="")' at line 77 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/datafile.hxx 'void Datafile::add(BoutReal &r, const char *name, bool save_repeat=false, const std::string &description="")' at line 79 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/datafile.hxx 'void Datafile::add(bool &b, const char *name, bool save_repeat=false, const std::string &description="")' at line 81 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/datafile.hxx 'void Datafile::add(Field2D &f, const char *name, bool save_repeat=false, const std::string &description="")' at line 83 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/datafile.hxx 'void Datafile::add(Field3D &f, const char *name, bool save_repeat=false, const std::string &description="")' at line 85 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/datafile.hxx 'void Datafile::add(FieldPerp &f, const char *name, bool save_repeat=false, const std::string &description="")' at line 87 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/datafile.hxx 'void Datafile::add(Vector2D &f, const char *name, bool save_repeat=false, const std::string &description="")' at line 89 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/datafile.hxx 'void Datafile::add(Vector3D &f, const char *name, bool save_repeat=false, const std::string &description="")' at line 91 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/datafile.hxx 'void InterpolationFactory::add(CreateInterpCallback interp, const std::string &name)' at line 63 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/interpolation_factory.hxx 'void multioutbuf< char_type, traits >::add(std::basic_ostream< char_type, traits > &str)' at line 19 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/multiostream.hxx 'void multiostream< char_type, traits >::add(std::basic_ostream< char_type, traits > &str)' at line 84 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/multiostream.hxx 'void Output::add(std::basic_ostream< char, _Tr > &str)' at line 105 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/output.hxx 'void SlepcSolver::add(Field2D &v, const std::string &name, const std::string &description="") override' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/slepc/slepc.hxx 'void SlepcSolver::add(Field3D &v, const std::string &name, const std::string &description="") override' at line 106 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/slepc/slepc.hxx 'void SlepcSolver::add(Vector2D &v, const std::string &name, const std::string &description="") override' at line 113 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/slepc/slepc.hxx 'void SlepcSolver::add(Vector3D &v, const std::string &name, const std::string &description="") override' at line 120 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/slepc/slepc.hxx /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/boundary_factory.cxx:339: warning: no matching class member found for void BoundaryFactory::addMod(BoundaryModifier *bmod, const string &name) Possible candidates: 'void BoundaryFactory::addMod(BoundaryModifier *bmod, const std::string &name)' at line 93 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/boundary_factory.hxx 'void BoundaryFactory::addMod(BoundaryModifier *bmod, const char *name)' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/boundary_factory.hxx /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/coordinates.cxx:1229: warning: no matching class member found for Field2D Coordinates::DDZ(const MAYBE_UNUSED(Field2D &f), CELL_LOC loc, const std::string &method, const std::string ®ion) Possible candidates: 'Field2D Coordinates::DDZ(const Field2D &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT", const std::string ®ion="RGN_NOBNDRY")' at line 184 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/coordinates.hxx 'Field2D Coordinates::DDZ(const Field2D &f, CELL_LOC outloc, const std::string &method, REGION region)' at line 186 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/coordinates.hxx 'Field2D Coordinates::DDZ(const Field2D &f, CELL_LOC outloc, DIFF_METHOD method, REGION region=RGN_NOBNDRY)' at line 186 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/coordinates.hxx /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/coordinates.cxx:1244: warning: no matching class member found for Field2D Coordinates::Grad_par(const Field2D &var, MAYBE_UNUSED(CELL_LOC outloc), const std::string &method) Possible candidates: 'Field2D Coordinates::Grad_par(const Field2D &var, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT")' at line 189 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/coordinates.hxx 'Field2D Coordinates::Grad_par(const Field2D &f, CELL_LOC outloc, DIFF_METHOD method)' at line 191 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/coordinates.hxx 'Field3D Coordinates::Grad_par(const Field3D &var, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT")' at line 193 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/coordinates.hxx 'Field3D Coordinates::Grad_par(const Field3D &f, CELL_LOC outloc, DIFF_METHOD method)' at line 195 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/coordinates.hxx /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/coordinates.cxx:1265: warning: no matching class member found for Field2D Coordinates::Vpar_Grad_par(const Field2D &v, const Field2D &f, MAYBE_UNUSED(CELL_LOC outloc), const std::string &method) Possible candidates: 'Field2D Coordinates::Vpar_Grad_par(const Field2D &v, const Field2D &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT")' at line 198 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/coordinates.hxx 'Field2D Coordinates::Vpar_Grad_par(const Field2D &v, const Field2D &f, CELL_LOC outloc, DIFF_METHOD method)' at line 203 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/coordinates.hxx 'Field3D Coordinates::Vpar_Grad_par(const Field3D &v, const Field3D &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT")' at line 208 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/coordinates.hxx 'Field3D Coordinates::Vpar_Grad_par(const Field3D &v, const Field3D &f, CELL_LOC outloc, DIFF_METHOD method)' at line 213 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/coordinates.hxx /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/index_derivs.cxx:59: warning: no matching class member found for STAGGER Mesh::getStagger(CELL_LOC vloc, MAYBE_UNUSED(CELL_LOC inloc), const CELL_LOC outloc, const CELL_LOC allowedStaggerLoc) const Possible candidates: 'STAGGER Mesh::getStagger(const CELL_LOC inloc, const CELL_LOC outloc, const CELL_LOC allowedloc) const' at line 662 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/mesh.hxx 'STAGGER Mesh::getStagger(const CELL_LOC vloc, const CELL_LOC inloc, const CELL_LOC outloc, const CELL_LOC allowedloc) const' at line 669 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/mesh.hxx .cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/output.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/petsclib.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/petsclib.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/range.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/range.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/slepclib.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/slepclib.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/timer.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/timer.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/type_name.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/type_name.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/utils.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/utils.cxx... Building macro definition list... Building group list... Building directory list... Building namespace list... Building file list... Building class list... Building concept list... Computing nesting relations for classes... Associating documentation with classes... Associating documentation with concepts... Building example list... Searching for enumerations... Searching for documented typedefs... Searching for members imported via using declarations... Searching for included using directives... Searching for documented variables... Building interface member list... Building member list... Searching for friends... Searching for documented defines... Computing class inheritance relations... Computing class usage relations... Flushing cached template relations that have become invalid... Computing class relations... Add enum values to enums... Searching for member function documentation... Creating members for template instances... Building page list... Search for main page... Computing page relations... Determining the scope of groups... Sorting lists... Determining which enums are documented Computing member relations... Building full member lists recursively... Adding members to member groups. Computing member references... Inheriting documentation... Generating disk names... Adding source references... Adding xrefitems... Sorting member lists... Setting anonymous enum type... Computing dependencies between directories... Generating citations page... Counting members... Counting data structures... Resolving user defined references... Finding anchors and sections in the documentation... Transferring function references... Combining using relations... Adding members to index pages... Correcting members for VHDL... Computing tooltip texts... Generating style sheet... Generating search indices... Generating images for formulas in HTML... Generating example documentation... Generating file sources... Generating file documentation... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/boundary_factory.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/boundary_op.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/boundary_region.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/boundary_standard.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/array.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/assert.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/bout_enum_class.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/constants.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_opsh: line 1: latex: command not found error: Problems running latex. Check your installation or look for typos in _formulas.tex and check _formulas.log! sh: line 1: latex: command not found error: Problems running latex. Check your installation or look for typos in _formulas_dark.tex and check _formulas_dark.log! /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/bout_enum_class.hxx:68: warning: Unsupported xml/html tag found enmpi/include/bout/coordinates.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/deprecated.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/deriv_store.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/expr.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/field_visitor.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/fieldgroup.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/format.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/fv_ops.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/generic_factory.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/globalfield.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/griddata.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/index_derivs.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/index_derivs_interface.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/invert/laplacexy.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/invert/laplacexz.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/invertable_operator.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/macro_for_each.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/mesh.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/monitor.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/openmpwrap.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/paralleltransform.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/petsclib.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/physicsmodel.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/region.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/rkscheme.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/rvec.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/scorepwrapper.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/slepclib.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/snb.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/solver.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/solverfactory.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/surfaceiter.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/sys/expressionparser.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/sys/gettext.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/sys/range.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/sys/timer.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/sys/type_name.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/sys/uncopyable.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/sys/uuid.h... Gener/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/difops.hxx:290: warning: The following parameter of Div_par_K_Grad_par(BoutReal kY, const Field2D &f, CELL_LOC outloc=CELL_DEFAULT) is not documented: parameter 'outloc' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/difops.hxx:198: warning: The following parameter of Grad2_par2(const Field2D &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT") is not documented: parameter 'method' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/gyro_average.hxx:52: warning: argument 'flags' of command @param is not found in the argument list of gyroPade0(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/gyro_average.hxx:52: warning: The following parameters of gyroPade0(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) are not documented: parameter 'inner_boundary_flags' parameter 'outer_boundary_flags' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/gyro_average.hxx:84: warning: argument 'flags' of command @param is not found in the argument list of gyroPade1(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/gyro_average.hxx:84: warning: The following parameters of gyroPade1(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) are not documented: parameter 'inner_boundary_flags' parameter 'outer_boundary_flags' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/gyro_average.hxx:120: warning: argument 'flags' of command @param is not found in the argument list of gyroPade2(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/gyro_average.hxx:120: warning: The following parameters of gyroPade2(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) are not documented: parameter 'inner_boundary_flags' parameter 'outer_boundary_flags' ating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/sys/variant.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/template_combinations.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/traits.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout_types.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/boutcomm.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/boutexception.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/boutmain.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/cyclic_reduction.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/datafile.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dcomplex.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/derivs.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/difops.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/fft.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/field.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/field2d.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/field3d.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/field_data.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/field_factory.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/fieldperp.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/globals.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/gyro_average.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/initialprofiles.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/interpolation.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/interpolation_factory.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/invert_laplace.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/invert_parderiv.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/lapack_routines.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/mask.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/msg_stack.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/multiostream.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/options.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/options_netcdf.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/optionsreader.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/output.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/parallel_boundary_op.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/parallel_boundary_region.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/pvode/band.h... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/pvode/cvdiag.h... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/pvode/cvode.h... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/pvode/cvspgmr.h... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/pvode/iterativ.h... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/pvode/llnlmath.h... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/pvode/llnltyps.h... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/pvode/nvector.h... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/pvode/pvbbdpre.h... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/pvode/smalldense.h... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/pvode/spgmr.h... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/pvode/vector.h... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/smoothing.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/sourcex.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/stencils.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/unused.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/utils.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/vecops.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/vector2d.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/vector3d.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/where.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/bout++-time.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/bout++-time.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/bout++.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/field/field.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/field/field2d.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/field/field3d.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/field/field_data.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/field/field_factory.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/field/fieldgenerators.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/field/fieldgenerators.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/field/fieldgroup.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/field/fieldperp.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/field/gen_fieldops.py... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/field/generated_fieldops.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/field/globalfield.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/field/initialprofiles.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/field/vecops.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/field/vector2d.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/field/vector3d.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/field/where.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/datafile.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/dataformat.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/formatfactory.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/formatfactory.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/fft_fftw.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/lapack_routines.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/cyclic/cyclic_laplace.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/cyclic/cyclic_laplace.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/multigrid/multigrid_alg.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/multigrid/multigrid_laplace.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/multigrid/multigrid_laplace.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/multigrid/multigrid_solver.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/mumps/mumps_laplace.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/mumps/mumps_laplace.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/naulin/naulin_laplace.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/naulin/naulin_laplace.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/pdd/pdd.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/pdd/pdd.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/petsc/petsc_laplace.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/petsc/petsc_laplace.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/serial_band/serial_band.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/serial_band/serial_band.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/serial_tri/serial_tri.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/serial_tri/serial_tri.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/shoot/shoot_laplace.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/shoot/shoot_laplace.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/spt/spt.cxx... Generating docs for fil/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/difops.hxx:290: warning: The following parameter of Div_par_K_Grad_par(BoutReal kY, const Field2D &f, CELL_LOC outloc=CELL_DEFAULT) is not documented: parameter 'outloc' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/difops.hxx:198: warning: The following parameter of Grad2_par2(const Field2D &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT") is not documented: parameter 'method' e /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/spt/spt.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/invert_laplace.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/laplacefactory.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/laplacefactory.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplacexy/laplacexy.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplacexz/impls/cyclic/laplacexz-cyclic.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplacexz/impls/cyclic/laplacexz-cyclic.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplacexz/impls/petsc/laplacexz-petsc.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplacexz/impls/petsc/laplacexz-petsc.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplacexz/laplacexz.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/parderiv/impls/cyclic/cyclic.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/parderiv/impls/cyclic/cyclic.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/parderiv/invert_parderiv.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/parderiv/parderiv_factory.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/boundary_factory.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/boundary_region.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/boundary_standard.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/coordinates.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/data/gridfromfile.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/data/gridfromoptions.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/difops.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/fv_ops.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/impls/bout/boutmesh.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/impls/bout/boutmesh.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/index_derivs.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/interpolation.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/interpolation/bilinear.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/interpolation/hermite_spline.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/interpolation/interpolation_factory.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/interpolation/lagrange_4pt.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/interpolation/monotonic_hermite_spline.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/mesh.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/meshfactory.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/meshfactory.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/parallel/fci.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/parallel/fci.hxx... Generating docs for file /b/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/gyro_average.hxx:52: warning: argument 'flags' of command @param is not found in the argument list of gyroPade0(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/gyro_average.hxx:52: warning: The following parameters of gyroPade0(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) are not documented: parameter 'inner_boundary_flags' parameter 'outer_boundary_flags' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/gyro_average.hxx:84: warning: argument 'flags' of command @param is not found in the argument list of gyroPade1(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/gyro_average.hxx:84: warning: The following parameters of gyroPade1(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) are not documented: parameter 'inner_boundary_flags' parameter 'outer_boundary_flags' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/gyro_average.hxx:120: warning: argument 'flags' of command @param is not found in the argument list of gyroPade2(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/gyro_average.hxx:120: warning: The following parameters of gyroPade2(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) are not documented: parameter 'inner_boundary_flags' parameter 'outer_boundary_flags' uilddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/parallel/identity.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/parallel/shiftedmetric.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/parallel_boundary_op.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/parallel_boundary_region.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/surfaceiter.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/physics/gyro_average.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/physics/physicsmodel.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/physics/smoothing.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/physics/snb.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/physics/sourcex.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/adams_bashforth/adams_bashforth.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/adams_bashforth/adams_bashforth.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/arkode/arkode.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/arkode/arkode.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/cvode/cvode.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/cvode/cvode.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/euler/euler.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/euler/euler.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/ida/ida.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/ida/ida.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/imex-bdf2/imex-bdf2.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/imex-bdf2/imex-bdf2.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/karniadakis/karniadakis.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/karniadakis/karniadakis.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/petsc/petsc.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/petsc/petsc.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/power/power.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/power/power.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/pvode/pvode.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/pvode/pvode.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rk3-ssp/rk3-ssp.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rk3-ssp/rk3-ssp.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rk4/rk4.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rk4/rk4.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rkgeneric/impls/cashkarp/cashkarp.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rkgeneric/impls/cashkarp/cashkarp.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rkgeneric/impls/rk4simple/rk4simple.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rkgeneric/impls/rk4simple/rk4simple.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rkgeneric/impls/rkf34/rkf34.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rkgeneric/impls/rkf34/rkf34.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rkgeneric/impls/rkf45/rkf45.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rkgeneric/impls/rkf45/rkf45.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rkgeneric/rkgeneric.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rkgeneric/rkgeneric.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rkgeneric/rkscheme.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rkgeneric/rkschemefactory.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rkgeneric/rkschemefactory.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/slepc/slepc.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/slepc/slepc.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/snes/snes.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/snes/snes.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/split-rk/split-rk.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/split-rk/split-rk.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/solver.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/solverfactory.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/bout_types.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/boutcomm.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/boutexception.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/derivs.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/expressionparser.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/msg_stack.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/options.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/options/optionparser.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/options/options_ini.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/options/options_ini.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/options/options_netcdf.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/optionsreader.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/output.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/petsclib.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/range.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/slepclib.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/timer.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/type_name.cxx... Generating docs for file /builddir//builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/array.hxx:385: warning: Unsupported xml/html tag found /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx:203: warning: The following parameter of DataFormat::getAttribute(const std::string &varname, const std::string &attrname, BoutReal &value)=0 is not documented: parameter 'value' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx:187: warning: The following parameter of DataFormat::getAttribute(const std::string &varname, const std::string &attrname, int &value)=0 is not documented: parameter 'value' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx:171: warning: The following parameter of DataFormat::getAttribute(const std::string &varname, const std::string &attrname, std::string &text)=0 is not documented: parameter 'text' build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/utils.cxx... Generating page documentation... Generating group documentation... Generating class documentation... Generating docs for compound AdamsBashforthSolver... Generating docs for compound Add... Generating docs for compound ArkodeSolver... Generating docs for compound Array... Generating docs for compound ArrayData... Generating docs for compound asExpr... Generating docs for compound asExpr< double >... Generating docs for compound asExpr< Field3D >... Generating docs for compound asExpr< float >... Generating docs for compound asExpr< int >... Generating docs for compound Bilinear... Generating docs for compound BinaryExpr... Generating docs for compound BinaryResult... Generating docs for compound BoundaryConstGradient... Generating docs for compound BoundaryConstLaplace... Generating docs for compound BoundaryDirichlet... Generating docs for compound BoundaryDirichlet_2ndOrder... Generating docs for compound BoundaryDirichlet_4thOrder... Generating docs for compound BoundaryDirichlet_O3... Generating docs for compound BoundaryDirichlet_O4... Generating docs for compound BoundaryDivCurl... Generating docs for compound BoundaryFactory... Generating docs for compound BoundaryFree... Generating docs for compound BoundaryFree_O2... Generating docs for compound BoundaryFree_O3... Generating docs for compound BoundaryFromFieldAligned... Generating docs for compound BoundaryModifier... Generating docs for compound BoundaryNeumann... Generating docs for compound BoundaryNeumann2... Generating docs for compound BoundaryNeumann_2ndOrder... Generating docs for compound BoundaryNeumann_4thOrder... Generating docs for compound BoundaryNeumann_NonOrthogonal... Generating docs for compound BoundaryNeumann_O4... Generating docs for compound BoundaryNeumannPar... Generating docs for compound BoundaryOp... Generating docs for compound BoundaryOpBase... Generating docs for compound BoundaryOpPar... Generating docs for compound BoundaryOpPar_dirichlet... Generating docs for compound BoundaryOpPar_dirichlet_interp... Generating docs for compound BoundaryOpPar_dirichlet_O3... Generating docs for compound BoundaryOpPar_neumann... Generating docs for compound BoundaryRegion... Generating docs for compound BoundaryRegionBase... Generating docs for compound BoundaryRegionPar... Generating docs for nested compound BoundaryRegionPar::IndexPoint... Generating docs for nested compound BoundaryRegionPar::Indices... Generating docs for nested compound BoundaryRegionPar::RealPoint... Generating docs for compound BoundaryRegionXIn... Generating docs for compound BoundaryRegionXOut... Generating docs for compound BoundaryRegionYDown... Generating docs for compound BoundaryRegionYUp... Generating docs for compound BoundaryRelax... Generating docs for compound BoundaryRobin... Generating docs for compound BoundaryToFieldAligned... Generating docs for compound BoundaryWidth... Generating docs for compound BoundaryZeroLaplace... Generating docs for compound BoundaryZeroLaplace2... Generating docs for compound BoutComm... Generating docs for compound BoutException... Generating docs for compound BoutIterationFail... Generating docs for compound BoutMask... Generating docs for compound BoutMesh... Generating docs for nested compound BoutMesh::CommHandle... Generating docs for compound BoutMonitor... Generating docs for compound BoutRhsFail... Generating docs for compound CASHKARPScheme... Generating docs for compound ConditionalOutput... Generating docs for compound Coordinates... Generating docs for compound CvodeSolver... Generating docs for compound CyclicReduce... Generating docs for compound Datafile... Generating docs for nested compound Datafile::VarStr... Generating docs for compound DataFormat... Generating docs for compound DeferredFunction... Generating docs for compound DerivativeStore... Generating docs for compound DerivativeType... Generating docs for compound DirectionTypes... Generating docs for compound Divide... Generating docs for compound DummyOutput... Generating docs for compound /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/generic_factory.hxx:52: warning: The following parameter of Factory::create(const std::string &name, Args &&... args) is not documented: parameter 'args' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/field2d.hxx:58: warning: The following parameters of Field2D::Field2D(Mesh *localmesh=nullptr, CELL_LOC location_in=CELL_CENTRE, DirectionTypes directions_in={YDirectionType::Standard, ZDirectionType::Average}) are not documented: parameter 'location_in' parameter 'directions_in' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/griddata.hxx:208: warning: The following parameter of GridFromOptions::get(Mesh *mesh, BoutReal &rval, const std::string &name, BoutReal def=0.0) is not documented: parameter 'def' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/griddata.hxx:182: warning: The following parameter of GridFromOptions::get(Mesh *mesh, std::string &sval, const std::string &name, const std::string &def="") is not documented: parameter 'def' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx:203: warning: The following parameter of H5Format::getAttribute(const std::string &varname, const std::string &attrname, BoutReal &value) is not documented: parameter 'value' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx:187: warning: The following parameter of H5Format::getAttribute(const std::string &varname, const std::string &attrname, int &value) is not documented: parameter 'value' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx:171: warning: The following parameter of H5Format::getAttribute(const std::string &varname, const std::string &attrname, std::string &text) is not documented: parameter 'text' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/petsc/petsc_laplace.cxx:908: warning: argument 'coef1' from the argument list of LaplacePetsc::Coeffs has multiple @param documentation sections /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/petsc/petsc_laplace.cxx:908: warning: argument 'coef2' from the argument list of LaplacePetsc::Coeffs has multiple @param documentation sections /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/petsc/petsc_laplace.cxx:908: warning: argument 'coef3' from the argument list of LaplacePetsc::Coeffs has multiple @param documentation sections /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/petsc/petsc_laplace.cxx:908: warning: argument 'coef4' from the argument list of LaplacePetsc::Coeffs has multiple @param documentation sections /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/petsc/petsc_laplace.cxx:908: warning: argument 'coef5' from the argument list of LaplacePetsc::Coeffs has multiple @param documentation sections /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/petsc/petsc_laplace.cxx:851: warning: argument 'MatA' from the argument list of LaplacePetsc::Element has multiple @param documentation sections /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/invert_laplace.hxx:208: warning: The following parameters of Laplacian::create(Options *opt=nullptr, const CELL_LOC loc=CELL_CENTRE, Mesh *mesh_in=nullptr) are not documented: parameter 'loc' parameter 'mesh_in' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/invert_laplace.cxx:380: warning: argument 'avec' from the argument list of Laplacian::tridagMatrix has multiple @param documentation sections /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/invert_laplace.cxx:380: warning: argument 'bvec' from the argument list of Laplacian::tridagMatrix has multiple @param documentation sections /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/invert_laplace.cxx:380: warning: argument 'cvec' from the argument list of Laplacian::tridagMatrix has multiple @param documentation sections /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/mesh.hxx:756: warning: argument 'v' of command @param is not found in the argument list of Mesh::indexVDDX(const T &vel, const T &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT", REGION region=RGN_NOBNDRY) const /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/mesh.hxx:756: warning: The following parameter of Mesh::indexVDDX(const T &vel, const T &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT", REGION region=RGN_NOBNDRY) const is not documented: parameter 'vel' EmptyFormat... Generating docs for compound enumWrapper... Generating docs for compound EulerSolver... Generating docs for compound ExpressionParser... Generating docs for nested compound ExpressionParser::LexInfo... Generating docs for compound exprTraits... Generating docs for compound exprTraits< double >... Generating docs for compound exprTraits< float >... Generating docs for compound exprTraits< int >... Generating docs for compound Factory... Generating docs for compound FCIMap... Generating docs for compound FCITransform... Generating docs for compound fcmplx... Generating docs for compound Field... Generating docs for compound Field2D... Generating docs for compound Field2DExpr... Generating docs for compound Field3D... Generating docs for compound Field3DExpr... Generating docs for compound FieldAbs... Generating docs for compound FieldATan... Generating docs for compound FieldBallooning... Generating docs for compound FieldBinary... Generating docs for compound FieldCos... Generating docs for compound FieldCosh... Generating docs for compound FieldData... Generating docs for compound FieldErf... Generating docs for compound FieldFactory... Generating docs for compound FieldFunction... Generating docs for compound FieldGaussian... Generating docs for compound FieldGenerator... Generating docs for compound FieldGenOneArg... Generating docs for compound FieldGenTwoArg... Generating docs for compound FieldGroup... Generating docs for compound FieldHeaviside... Generating docs for compound FieldMax... Generating docs for compound FieldMin... Generating docs for compound FieldMixmode... Generating docs for compound FieldNull... Generating docs for compound FieldPerp... Generating docs for compound FieldRound... Generating docs for compound FieldSin... Generating docs for compound FieldSinh... Generating docs for compound FieldSqrt... Generating docs for compound FieldTanh... Generating docs for compound FieldTanhHat... Generating docs for compound FieldValue... Generating docs for compound FieldValuePtr... Generating docs for compound FieldVisitor... Generating docs for compound FormatFactory... Generating docs for compound GlobalField... Generating docs for compound GlobalField2D... Generating docs for compound GlobalField3D... Generating docs for compound GridDataSource... Generating docs for compound GridFile... Generating docs for compound GridFromOptions... Generating docs for compound H5Format... Generating docs for compound HermiteSpline... Generating docs for compound IdaSolver... Generating docs for compound IMEXBDF2... Generating docs for compound Interpolation... Generating docs for compound InterpolationFactory... Generating docs for compound InvertPar... Generating docs for compound InvertParCR... Generating docs for compound KarniadakisSolver... Generating docs for compound Lagrange4pt... Generating docs for compound LaplaceCyclic... Generating docs for compound LaplaceFactory... Generating docs for compound LaplaceMultigrid... Generating docs for compound LaplaceMumps... Generating docs for compound LaplaceNaulin... Generating docs for compound LaplacePDD... Generating docs for nested compound LaplacePDD::PDD_data... Generating docs for compound LaplacePetsc... Generating docs for compound LaplaceSerialBand... Generating docs for compound LaplaceSerialTri... Generating docs for compound LaplaceShoot... Generating docs for compound LaplaceSPT... Generating docs for nested compound LaplaceSPT::SPT_data... Generating docs for compound LaplaceXY... Generating docs for nested compound LaplaceXY::LaplaceXYMonitor... Generating docs for compound LaplaceXZ... Generating docs for compound LaplaceXZcyclic... Generating docs for compound LaplaceXZpetsc... Generating docs for nested compound LaplaceXZpetsc::YSlice... Generating docs for compound Laplacian... Generating docs for compound LegacyModel... Generating docs for compound Literal... Generating docs for compound LoadVarOp... Generating docs for compound Matrix... Generating docs for compound Mesh... Generating docs for compound MeshFactory... Generating d/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx:203: warning: The following parameter of NcFormat::getAttribute(const std::string &varname, const std::string &attrname, BoutReal &value) is not documented: parameter 'value' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx:187: warning: The following parameter of NcFormat::getAttribute(const std::string &varname, const std::string &attrname, int &value) is not documented: parameter 'value' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx:171: warning: The following parameter of NcFormat::getAttribute(const std::string &varname, const std::string &attrname, std::string &text) is not documented: parameter 'text' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx:203: warning: The following parameter of Ncxx4::getAttribute(const std::string &varname, const std::string &attrname, BoutReal &value) is not documented: parameter 'value' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx:187: warning: The following parameter of Ncxx4::getAttribute(const std::string &varname, const std::string &attrname, int &value) is not documented: parameter 'value' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx:171: warning: The following parameter of Ncxx4::getAttribute(const std::string &varname, const std::string &attrname, std::string &text) is not documented: parameter 'text' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/options.hxx:161: warning: argument 'parent' of command @param is not found in the argument list of Options::Options(Options *parent_instance, std::string full_name) /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/options.hxx:161: warning: argument 'sectionName' of command @param is not found in the argument list of Options::Options(Options *parent_instance, std::string full_name) /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/options.hxx:161: warning: The following parameters of Options::Options(Options *parent_instance, std::string full_name) are not documented: parameter 'parent_instance' parameter 'full_name' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/physicsmodel.hxx:229: warning: The following parameter of PhysicsModel::bout_solve(Field2D &var, const char *name, const std::string &description="") is not documented: parameter 'description' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/paralleltransform.hxx:259: warning: The following parameter of ShiftedMetric::shiftZ(const Field3D &f, const Field2D &zangle, const std::string ®ion="RGN_NOX") const is not documented: parameter 'region' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/paralleltransform.hxx:275: warning: The following parameter of ShiftedMetric::shiftZ(const Field3D &f, const Tensor< dcomplex > &phs, const YDirectionType y_direction_out, const std::string ®ion="RGN_NOX") const is not documented: parameter 'region' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/surfaceiter.hxx:35: warning: The following parameter of SurfaceIter::SurfaceIter(Mesh *mesh, bool include_guards=false) is not documented: parameter 'include_guards' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/index_derivs_interface.hxx:276: warning: argument 'v' of command @param is not found in the argument list of bout::derivatives::index::VDDX(const T &vel, const T &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT", const std::string ®ion="RGN_NOBNDRY") /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/index_derivs_interface.hxx:276: warning: The following parameter of bout::derivatives::index::VDDX(const T &vel, const T &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT", const std::string ®ion="RGN_NOBNDRY") is not documented: parameter 'vel' ocs for compound metaData... Generating docs for compound Monitor... Generating docs for compound MonotonicHermiteSpline... Generating docs for compound MsgStack... Generating docs for compound MsgStackItem... Generating docs for compound Multigrid1DP... Generating docs for compound Multigrid2DPf1D... Generating docs for compound MultigridAlg... Generating docs for compound MultigridSerial... Generating docs for compound multiostream... Generating docs for compound multioutbuf... Generating docs for compound multioutbuf_init... Generating docs for compound Multiply... Generating docs for compound NcFormat... Generating docs for compound Ncxx4... Generating docs for compound OptionINI... Generating docs for compound OptionParser... Generating docs for compound Options... Generating docs for nested compound Options::AttributeType... Generating docs for nested compound Options::OptionValue... Generating docs for compound OptionsReader... Generating docs for compound Output... Generating docs for compound ParallelTransform... Generating docs for compound ParallelTransformIdentity... Generating docs for compound ParDerivFactory... Generating docs for compound ParseException... Generating docs for compound PetscLib... Generating docs for compound PetscSolver... Generating docs for compound PhysicsModel... Generating docs for nested compound PhysicsModel::PhysicsModelMonitor... Generating docs for compound PncFormat... Generating docs for compound Power... Generating docs for compound PowerSolver... Generating docs for compound produceCombinations... Generating docs for compound PromoteType... Generating docs for compound PvodeSolver... Generating docs for compound RangeIterator... Generating docs for compound Region... Generating docs for compound RegionStats... Generating docs for compound RegisterInFactory... Generating docs for compound RegisterInFactory< Solver, DerivedType >... Generating docs for compound registerMethod... Generating docs for compound RK3SSP... Generating docs for compound RK4SIMPLEScheme... Generating docs for compound RK4Solver... Generating docs for compound RKF34Scheme... Generating docs for compound RKF45Scheme... Generating docs for compound RKGenericSolver... Generating docs for compound RKScheme... Generating docs for compound RKSchemeFactory... Generating docs for compound RunMetrics... Generating docs for compound SaveDerivsOp... Generating docs for compound SaveVarOp... Generating docs for compound Set... Generating docs for compound ShiftedMetric... Generating docs for nested compound ShiftedMetric::ParallelSlicePhase... Generating docs for compound SlepcLib... Generating docs for compound SlepcSolver... Generating docs for compound snes_info... Generating docs for compound SNESSolver... Generating docs for compound Solver... Generating docs for nested compound Solver::VarStr... Generating docs for compound SolverFactory... Generating docs for compound SpecificInd... Generating docs for compound SplitFluxDerivativeType... Generating docs for compound SplitRK... Generating docs for compound stencil... Generating docs for compound Subtract... Generating docs for compound SurfaceIter... Generating docs for compound Tensor... Generating docs for compound Timer... Generating docs for nested compound Timer::timer_info... Generating docs for compound TypeContainer... Generating docs for compound Uncopyable... Generating docs for compound Vector2D... Generating docs for compound Vector3D... Generating concept documentation... Generating namespace index... Generating docs for namespace bout Generating docs for compound bout::HeatFluxSNB... Generating docs for namespace bout::derivatives Generating docs for namespace bout::derivatives::index Generating docs for namespace bout::experimental Generating docs for compound bout::experimental::CommandLineArgs... Generating docs for compound bout::experimental::OptionsNetCDF... Generating docs for namespace bout::fft Generating docs for namespace bout::globals Generating docs for namespace bout::inversion Generating docs for compound bout::inversion::Invertab/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/sys/variant.hxx:81: warning: Found unknown command '\v' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/sys/variant.hxx:118: warning: Found unknown command '\v' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/array.hxx:385: warning: Unsupported xml/html tag found leOperator... Generating docs for namespace bout::utils Generating docs for compound bout::utils::_Unique_if... Generating docs for compound bout::utils::_Unique_if< T[]>... Generating docs for compound bout::utils::_Unique_if< T[N]>... Generating docs for compound bout::utils::function_traits... Generating docs for compound bout::utils::function_traits< R(*)(Args...)>... Generating docs for nested compound bout::utils::function_traits< R(*)(Args...)>::arg... Generating docs for namespace bout::utils::details Generating docs for compound bout::utils::details::CompareTypes... Generating docs for compound bout::utils::details::CompareTypes< T, T >... Generating docs for compound bout::utils::details::IsEqual... Generating docs for compound bout::utils::details::StaticCastOrThrow... Generating docs for compound bout::utils::details::ToString... Generating docs for namespace FV Generating docs for compound FV::Fromm... Generating docs for compound FV::MC... Generating docs for compound FV::MinMod... Generating docs for compound FV::Stencil1D... Generating docs for compound FV::Upwind... Generating docs for namespace gen_fieldops Generating docs for compound gen_fieldops::Field... Generating docs for namespace pvode Generating docs for compound pvode::bandmat_type... Generating docs for compound pvode::CVodeMemRec... Generating docs for compound pvode::machenv_type... Generating docs for compound pvode::nvec_type... Generating docs for compound pvode::pvbbddata_type... Generating docs for compound pvode::SpgmrMemRec... Generating docs for namespace SI Generating docs for namespace std Generating docs for compound std::hash< uuids::uuid >... Generating docs for namespace uuids Generating docs for compound uuids::basic_uuid_random_generator... Generating docs for compound uuids::uuid... Generating docs for compound uuids::uuid_name_generator... Generating docs for compound uuids::uuid_time_generator... Generating docs for namespace uuids::detail Generating docs for compound uuids::detail::sha1... Generating graph info page... Generating directory documentation... Generating index page... Generating page index... Generating module index... Generating namespace index... Generating namespace member index... Generating concept index... Generating annotated compound index... Generating alphabetical compound index... Generating hierarchical class index... Generating member index... Generating file index... Generating file member index... Generating example index... finalizing index lists... writing tag file... Generating XML output... Generating XML output for class bout::utils::_Unique_if Generating XML output for class bout::utils::_Unique_if< T[]> Generating XML output for class bout::utils::_Unique_if< T[N]> Generating XML output for class AdamsBashforthSolver Generating XML output for class Add Generating XML output for class bout::utils::function_traits< R(*)(Args...)>::arg Generating XML output for class ArkodeSolver Generating XML output for class Array Generating XML output for class ArrayData Generating XML output for class asExpr Generating XML output for class asExpr< double > Generating XML output for class asExpr< Field3D > Generating XML output for class asExpr< float > Generating XML output for class asExpr< int > Generating XML output for class Options::AttributeType Generating XML output for class pvode::bandmat_type Generating XML output for class uuids::basic_uuid_random_generator Generating XML output for class Bilinear Generating XML output for class BinaryExpr Generating XML output for class BinaryResult Generating XML output for class BoundaryConstGradient Generating XML output for class BoundaryConstLaplace Generating XML output for class BoundaryDirichlet Generating XML output for class BoundaryDirichlet_2ndOrder Generating XML output for class BoundaryDirichlet_4thOrder Generating XML output for class BoundaryDirichlet_O3 Generating XML output for class BoundaryDirichlet_O4 Generating XML output for class BoundaryDivCurl Generating XML output for class BoundaryFactory Generating XML output for class Boundar/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx:171: warning: The following parameter of DataFormat::getAttribute(const std::string &varname, const std::string &attrname, std::string &text)=0 is not documented: parameter 'text' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx:187: warning: The following parameter of DataFormat::getAttribute(const std::string &varname, const std::string &attrname, int &value)=0 is not documented: parameter 'value' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx:203: warning: The following parameter of DataFormat::getAttribute(const std::string &varname, const std::string &attrname, BoutReal &value)=0 is not documented: parameter 'value' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/generic_factory.hxx:52: warning: The following parameter of Factory::create(const std::string &name, Args &&... args) is not documented: parameter 'args' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/field2d.hxx:58: warning: The following parameters of Field2D::Field2D(Mesh *localmesh=nullptr, CELL_LOC location_in=CELL_CENTRE, DirectionTypes directions_in={YDirectionType::Standard, ZDirectionType::Average}) are not documented: parameter 'location_in' parameter 'directions_in' yFree Generating XML output for class BoundaryFree_O2 Generating XML output for class BoundaryFree_O3 Generating XML output for class BoundaryFromFieldAligned Generating XML output for class BoundaryModifier Generating XML output for class BoundaryNeumann Generating XML output for class BoundaryNeumann2 Generating XML output for class BoundaryNeumann_2ndOrder Generating XML output for class BoundaryNeumann_4thOrder Generating XML output for class BoundaryNeumann_NonOrthogonal Generating XML output for class BoundaryNeumann_O4 Generating XML output for class BoundaryNeumannPar Generating XML output for class BoundaryOp Generating XML output for class BoundaryOpBase Generating XML output for class BoundaryOpPar Generating XML output for class BoundaryOpPar_dirichlet Generating XML output for class BoundaryOpPar_dirichlet_interp Generating XML output for class BoundaryOpPar_dirichlet_O3 Generating XML output for class BoundaryOpPar_neumann Generating XML output for class BoundaryRegion Generating XML output for class BoundaryRegionBase Generating XML output for class BoundaryRegionPar Generating XML output for class BoundaryRegionXIn Generating XML output for class BoundaryRegionXOut Generating XML output for class BoundaryRegionYDown Generating XML output for class BoundaryRegionYUp Generating XML output for class BoundaryRelax Generating XML output for class BoundaryRobin Generating XML output for class BoundaryToFieldAligned Generating XML output for class BoundaryWidth Generating XML output for class BoundaryZeroLaplace Generating XML output for class BoundaryZeroLaplace2 Generating XML output for class BoutComm Generating XML output for class BoutException Generating XML output for class BoutIterationFail Generating XML output for class BoutMask Generating XML output for class BoutMesh Generating XML output for class BoutMonitor Generating XML output for class BoutRhsFail Generating XML output for class CASHKARPScheme Generating XML output for class bout::experimental::CommandLineArgs Generating XML output for class BoutMesh::CommHandle Generating XML output for class bout::utils::details::CompareTypes Generating XML output for class bout::utils::details::CompareTypes< T, T > Generating XML output for class ConditionalOutput Generating XML output for class Coordinates Generating XML output for class pvode::CVodeMemRec Generating XML output for class CvodeSolver Generating XML output for class CyclicReduce Generating XML output for class Datafile Generating XML output for class DataFormat Generating XML output for class DeferredFunction Generating XML output for class DerivativeStore Generating XML output for class DerivativeType Generating XML output for class DirectionTypes Generating XML output for class Divide Generating XML output for class DummyOutput Generating XML output for class EmptyFormat Generating XML output for class enumWrapper Generating XML output for class EulerSolver Generating XML output for class ExpressionParser Generating XML output for class exprTraits Generating XML output for class exprTraits< double > Generating XML output for class exprTraits< float > Generating XML output for class exprTraits< int > Generating XML output for class Factory Generating XML output for class FCIMap Generating XML output for class FCITransform Generating XML output for class fcmplx Generating XML output for class Field Generating XML output for class gen_fieldops::Field Generating XML output for class Field2D Generating XML output for class Field2DExpr Generating XML output for class Field3D Generating XML output for class Field3DExpr Generating XML output for class FieldAbs Generating XML output for class FieldATan Generating XML output for class FieldBallooning Generating XML output for class FieldBinary Generating XML output for class FieldCos Generating XML output for class FieldCosh Generating XML output for class FieldData Generating XML output for class FieldErf Generating XML output for class FieldFactory Generating XML output for class FieldFunction Generating XML output for class FieldGaussian Generatin/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/griddata.hxx:182: warning: The following parameter of GridFromOptions::get(Mesh *mesh, std::string &sval, const std::string &name, const std::string &def="") is not documented: parameter 'def' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/griddata.hxx:208: warning: The following parameter of GridFromOptions::get(Mesh *mesh, BoutReal &rval, const std::string &name, BoutReal def=0.0) is not documented: parameter 'def' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx:171: warning: The following parameter of H5Format::getAttribute(const std::string &varname, const std::string &attrname, std::string &text) is not documented: parameter 'text' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx:187: warning: The following parameter of H5Format::getAttribute(const std::string &varname, const std::string &attrname, int &value) is not documented: parameter 'value' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx:203: warning: The following parameter of H5Format::getAttribute(const std::string &varname, const std::string &attrname, BoutReal &value) is not documented: parameter 'value' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/petsc/petsc_laplace.cxx:851: warning: argument 'MatA' from the argument list of LaplacePetsc::Element has multiple @param documentation sections /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/petsc/petsc_laplace.cxx:908: warning: argument 'coef1' from the argument list of LaplacePetsc::Coeffs has multiple @param documentation sections /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/petsc/petsc_laplace.cxx:908: warning: argument 'coef2' from the argument list of LaplacePetsc::Coeffs has multiple @param documentation sections /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/petsc/petsc_laplace.cxx:908: warning: argument 'coef3' from the argument list of LaplacePetsc::Coeffs has multiple @param documentation sections /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/petsc/petsc_laplace.cxx:908: warning: argument 'coef4' from the argument list of LaplacePetsc::Coeffs has multiple @param documentation sections /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/petsc/petsc_laplace.cxx:908: warning: argument 'coef5' from the argument list of LaplacePetsc::Coeffs has multiple @param documentation sections /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/invert_laplace.hxx:208: warning: The following parameters of Laplacian::create(Options *opt=nullptr, const CELL_LOC loc=CELL_CENTRE, Mesh *mesh_in=nullptr) are not documented: parameter 'loc' parameter 'mesh_in' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/invert_laplace.cxx:380: warning: argument 'avec' from the argument list of Laplacian::tridagMatrix has multiple @param documentation sections /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/invert_laplace.cxx:380: warning: argument 'bvec' from the argument list of Laplacian::tridagMatrix has multiple @param documentation sections /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/invert_laplace.cxx:380: warning: argument 'cvec' from the argument list of Laplacian::tridagMatrix has multiple @param documentation sections /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/mesh.hxx:756: warning: argument 'v' of command @param is not found in the argument list of Mesh::indexVDDX(const T &vel, const T &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT", REGION region=RGN_NOBNDRY) const /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/mesh.hxx:756: warning: The following parameter of Mesh::indexVDDX(const T &vel, const T &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT", REGION region=RGN_NOBNDRY) const is not documented: parameter 'vel' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx:171: warning: The following parameter of NcFormat::getAttribute(const std::string &varname, const std::string &attrname, std::string &text) is not documented: parameter 'text' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx:187: warning: The following parameter of NcFormat::getAttribute(const std::string &varname, const std::string &attrname, int &value) is not documented: parameter 'value' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx:203: warning: The following parameter of NcFormat::getAttribute(const std::string &varname, const std::string &attrname, BoutReal &value) is not documented: parameter 'value' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx:171: warning: The following parameter of Ncxx4::getAttribute(const std::string &varname, const std::string &attrname, std::string &text) is not documented: parameter 'text' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx:187: warning: The following parameter of Ncxx4::getAttribute(const std::string &varname, const std::string &attrname, int &value) is not documented: parameter 'value' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx:203: warning: The following parameter of Ncxx4::getAttribute(const std::string &varname, const std::string &attrname, BoutReal &value) is not documented: parameter 'value' g XML output for class FieldGenerator Generating XML output for class FieldGenOneArg Generating XML output for class FieldGenTwoArg Generating XML output for class FieldGroup Generating XML output for class FieldHeaviside Generating XML output for class FieldMax Generating XML output for class FieldMin Generating XML output for class FieldMixmode Generating XML output for class FieldNull Generating XML output for class FieldPerp Generating XML output for class FieldRound Generating XML output for class FieldSin Generating XML output for class FieldSinh Generating XML output for class FieldSqrt Generating XML output for class FieldTanh Generating XML output for class FieldTanhHat Generating XML output for class FieldValue Generating XML output for class FieldValuePtr Generating XML output for class FieldVisitor Generating XML output for class FormatFactory Generating XML output for class FV::Fromm Generating XML output for class bout::utils::function_traits Generating XML output for class bout::utils::function_traits< R(*)(Args...)> Generating XML output for class GlobalField Generating XML output for class GlobalField2D Generating XML output for class GlobalField3D Generating XML output for class GridDataSource Generating XML output for class GridFile Generating XML output for class GridFromOptions Generating XML output for class H5Format Generating XML output for class std::hash< uuids::uuid > Generating XML output for class bout::HeatFluxSNB Generating XML output for class HermiteSpline Generating XML output for class IdaSolver Generating XML output for class IMEXBDF2 Generating XML output for class BoundaryRegionPar::IndexPoint Generating XML output for class BoundaryRegionPar::Indices Generating XML output for class Interpolation Generating XML output for class InterpolationFactory Generating XML output for class bout::inversion::InvertableOperator Generating XML output for class InvertPar Generating XML output for class InvertParCR Generating XML output for class bout::utils::details::IsEqual Generating XML output for class KarniadakisSolver Generating XML output for class Lagrange4pt Generating XML output for class LaplaceCyclic Generating XML output for class LaplaceFactory Generating XML output for class LaplaceMultigrid Generating XML output for class LaplaceMumps Generating XML output for class LaplaceNaulin Generating XML output for class LaplacePDD Generating XML output for class LaplacePetsc Generating XML output for class LaplaceSerialBand Generating XML output for class LaplaceSerialTri Generating XML output for class LaplaceShoot Generating XML output for class LaplaceSPT Generating XML output for class LaplaceXY Generating XML output for class LaplaceXY::LaplaceXYMonitor Generating XML output for class LaplaceXZ Generating XML output for class LaplaceXZcyclic Generating XML output for class LaplaceXZpetsc Generating XML output for class Laplacian Generating XML output for class LegacyModel Generating XML output for class ExpressionParser::LexInfo Generating XML output for class Literal Generating XML output for class LoadVarOp Generating XML output for class pvode::machenv_type Generating XML output for class Matrix Generating XML output for class FV::MC Generating XML output for class Mesh Generating XML output for class MeshFactory Generating XML output for class metaData Generating XML output for class FV::MinMod Generating XML output for class Monitor Generating XML output for class MonotonicHermiteSpline Generating XML output for class MsgStack Generating XML output for class MsgStackItem Generating XML output for class Multigrid1DP Generating XML output for class Multigrid2DPf1D Generating XML output for class MultigridAlg Generating XML output for class MultigridSerial Generating XML output for class multiostream Generating XML output for class multioutbuf Generating XML output for class multioutbuf_init Generating XML output for class Multiply Generating XML output for class NcFormat Generating XML output for class Ncxx4 Generating XML output for class pvode::nvec_type Generating XML output for c/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/options.hxx:161: warning: argument 'parent' of command @param is not found in the argument list of Options::Options(Options *parent_instance, std::string full_name) /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/options.hxx:161: warning: argument 'sectionName' of command @param is not found in the argument list of Options::Options(Options *parent_instance, std::string full_name) /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/options.hxx:161: warning: The following parameters of Options::Options(Options *parent_instance, std::string full_name) are not documented: parameter 'parent_instance' parameter 'full_name' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/physicsmodel.hxx:229: warning: The following parameter of PhysicsModel::bout_solve(Field2D &var, const char *name, const std::string &description="") is not documented: parameter 'description' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/paralleltransform.hxx:259: warning: The following parameter of ShiftedMetric::shiftZ(const Field3D &f, const Field2D &zangle, const std::string ®ion="RGN_NOX") const is not documented: parameter 'region' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/paralleltransform.hxx:275: warning: The following parameter of ShiftedMetric::shiftZ(const Field3D &f, const Tensor< dcomplex > &phs, const YDirectionType y_direction_out, const std::string ®ion="RGN_NOX") const is not documented: parameter 'region' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/surfaceiter.hxx:35: warning: The following parameter of SurfaceIter::SurfaceIter(Mesh *mesh, bool include_guards=false) is not documented: parameter 'include_guards' lass OptionINI Generating XML output for class OptionParser Generating XML output for class Options Generating XML output for class bout::experimental::OptionsNetCDF Generating XML output for class OptionsReader Generating XML output for class Options::OptionValue Generating XML output for class Output Generating XML output for class ShiftedMetric::ParallelSlicePhase Generating XML output for class ParallelTransform Generating XML output for class ParallelTransformIdentity Generating XML output for class ParDerivFactory Generating XML output for class ParseException Generating XML output for class LaplacePDD::PDD_data Generating XML output for class PetscLib Generating XML output for class PetscSolver Generating XML output for class PhysicsModel Generating XML output for class PhysicsModel::PhysicsModelMonitor Generating XML output for class PncFormat Generating XML output for class Power Generating XML output for class PowerSolver Generating XML output for class produceCombinations Generating XML output for class PromoteType Generating XML output for class pvode::pvbbddata_type Generating XML output for class PvodeSolver Generating XML output for class RangeIterator Generating XML output for class BoundaryRegionPar::RealPoint Generating XML output for class Region Generating XML output for class RegionStats Generating XML output for class RegisterInFactory Generating XML output for class RegisterInFactory< Solver, DerivedType > Generating XML output for class registerMethod Generating XML output for class RK3SSP Generating XML output for class RK4SIMPLEScheme Generating XML output for class RK4Solver Generating XML output for class RKF34Scheme Generating XML output for class RKF45Scheme Generating XML output for class RKGenericSolver Generating XML output for class RKScheme Generating XML output for class RKSchemeFactory Generating XML output for class RunMetrics Generating XML output for class SaveDerivsOp Generating XML output for class SaveVarOp Generating XML output for class Set Generating XML output for class uuids::detail::sha1 Generating XML output for class ShiftedMetric Generating XML output for class SlepcLib Generating XML output for class SlepcSolver Generating XML output for class snes_info Generating XML output for class SNESSolver Generating XML output for class Solver Generating XML output for class SolverFactory Generating XML output for class SpecificInd Generating XML output for class pvode::SpgmrMemRec Generating XML output for class SplitFluxDerivativeType Generating XML output for class SplitRK Generating XML output for class LaplaceSPT::SPT_data Generating XML output for class bout::utils::details::StaticCastOrThrow Generating XML output for class stencil Generating XML output for class FV::Stencil1D Generating XML output for class Subtract Generating XML output for class SurfaceIter Generating XML output for class Tensor Generating XML output for class Timer Generating XML output for class Timer::timer_info Generating XML output for class bout::utils::details::ToString Generating XML output for class TypeContainer Generating XML output for class Uncopyable Generating XML output for class FV::Upwind Generating XML output for class uuids::uuid Generating XML output for class uuids::uuid_name_generator Generating XML output for class uuids::uuid_time_generator Generating XML output for class Datafile::VarStr Generating XML output for class Solver::VarStr Generating XML output for class Vector2D Generating XML output for class Vector3D Generating XML output for class LaplaceXZpetsc::YSlice Generating XML output for namespace @110 Generating XML output for namespace @111 Generating XML output for namespace @125 Generating XML output for namespace @178 Generating XML output for namespace @179 Generating XML output for namespace @180 Generating XML output for namespace @192 Generating XML output for namespace @207 Generating XML output for namespace @208 Generating XML output for namespace @210 Generating XML output for namespace @212 Generating XML output for namespace @214 Generating XML output for n/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/index_derivs_interface.hxx:276: warning: argument 'v' of command @param is not found in the argument list of bout::derivatives::index::VDDX(const T &vel, const T &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT", const std::string ®ion="RGN_NOBNDRY") /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/index_derivs_interface.hxx:276: warning: The following parameter of bout::derivatives::index::VDDX(const T &vel, const T &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT", const std::string ®ion="RGN_NOBNDRY") is not documented: parameter 'vel' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/sys/variant.hxx:81: warning: Found unknown command '\v' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/sys/variant.hxx:118: warning: Found unknown command '\v' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/bout_enum_class.hxx:68: warning: Unsupported xml/html tag found amespace @216 Generating XML output for namespace @218 Generating XML output for namespace @220 Generating XML output for namespace @222 Generating XML output for namespace @224 Generating XML output for namespace @226 Generating XML output for namespace @228 Generating XML output for namespace @230 Generating XML output for namespace @240 Generating XML output for namespace @245 Generating XML output for namespace @247 Generating XML output for namespace @249 Generating XML output for namespace @252 Generating XML output for namespace @256 Generating XML output for namespace @258 Generating XML output for namespace @262 Generating XML output for namespace @5 Generating XML output for namespace bout Generating XML output for namespace bout::derivatives Generating XML output for namespace bout::derivatives::index Generating XML output for namespace bout::experimental Generating XML output for namespace bout::fft Generating XML output for namespace bout::globals Generating XML output for namespace bout::inversion Generating XML output for namespace bout::utils Generating XML output for namespace bout::utils::details Generating XML output for namespace FV Generating XML output for namespace gen_fieldops Generating XML output for namespace netCDF Generating XML output for namespace pvode Generating XML output for namespace SI Generating XML output for namespace std Generating XML output for namespace uuids Generating XML output for namespace uuids::detail Generating XML output for file boundary_factory.hxx Generating XML output for file boundary_op.hxx Generating XML output for file boundary_region.hxx Generating XML output for file boundary_standard.hxx Generating XML output for file bout.hxx Generating XML output for file array.hxx Generating XML output for file assert.hxx Generating XML output for file bout_enum_class.hxx Generating XML output for file constants.hxx Generating XML output for file coordinates.hxx Generating XML output for file deprecated.hxx Generating XML output for file deriv_store.hxx Generating XML output for file expr.hxx Generating XML output for file field_visitor.hxx Generating XML output for file fieldgroup.hxx Generating XML output for file format.hxx Generating XML output for file fv_ops.hxx Generating XML output for file generic_factory.hxx Generating XML output for file globalfield.hxx Generating XML output for file griddata.hxx Generating XML output for file index_derivs.hxx Generating XML output for file index_derivs_interface.hxx Generating XML output for file laplacexy.hxx Generating XML output for file laplacexz.hxx Generating XML output for file invertable_operator.hxx Generating XML output for file macro_for_each.hxx Generating XML output for file mesh.hxx Generating XML output for file monitor.hxx Generating XML output for file openmpwrap.hxx Generating XML output for file paralleltransform.hxx Generating XML output for file petsclib.hxx Generating XML output for file physicsmodel.hxx Generating XML output for file region.hxx Generating XML output for file rkscheme.hxx Generating XML output for file rvec.hxx Generating XML output for file scorepwrapper.hxx Generating XML output for file slepclib.hxx Generating XML output for file snb.hxx Generating XML output for file solver.hxx Generating XML output for file solverfactory.hxx Generating XML output for file surfaceiter.hxx Generating XML output for file expressionparser.hxx Generating XML output for file gettext.hxx Generating XML output for file range.hxx Generating XML output for file timer.hxx Generating XML output for file type_name.hxx Generating XML output for file uncopyable.hxx Generating XML output for file uuid.h Generating XML output for file variant.hxx Generating XML output for file template_combinations.hxx Generating XML output for file traits.hxx Generating XML output for file bout_types.hxx Generating XML output for file boutcomm.hxx Generating XML output for file boutexception.hxx Generating XML output for file boutmain.hxx Generating XML output for file cyclic_reduction.hxx Generating XML output for file datafile.hxx/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/difops.hxx:198: warning: The following parameter of Grad2_par2(const Field2D &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT") is not documented: parameter 'method' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/difops.hxx:290: warning: The following parameter of Div_par_K_Grad_par(BoutReal kY, const Field2D &f, CELL_LOC outloc=CELL_DEFAULT) is not documented: parameter 'outloc' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/gyro_average.hxx:52: warning: argument 'flags' of command @param is not found in the argument list of gyroPade0(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/gyro_average.hxx:52: warning: The following parameters of gyroPade0(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) are not documented: parameter 'inner_boundary_flags' parameter 'outer_boundary_flags' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/gyro_average.hxx:84: warning: argument 'flags' of command @param is not found in the argument list of gyroPade1(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/gyro_average.hxx:84: warning: The following parameters of gyroPade1(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) are not documented: parameter 'inner_boundary_flags' parameter 'outer_boundary_flags' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/gyro_average.hxx:120: warning: argument 'flags' of command @param is not found in the argument list of gyroPade2(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/gyro_average.hxx:120: warning: The following parameters of gyroPade2(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) are not documented: parameter 'inner_boundary_flags' parameter 'outer_boundary_flags' Generating XML output for file dataformat.hxx Generating XML output for file dcomplex.hxx Generating XML output for file derivs.hxx Generating XML output for file difops.hxx Generating XML output for file fft.hxx Generating XML output for file field.hxx Generating XML output for file field2d.hxx Generating XML output for file field3d.hxx Generating XML output for file field_data.hxx Generating XML output for file field_factory.hxx Generating XML output for file fieldperp.hxx Generating XML output for file globals.hxx Generating XML output for file gyro_average.hxx Generating XML output for file initialprofiles.hxx Generating XML output for file interpolation.hxx Generating XML output for file interpolation_factory.hxx Generating XML output for file invert_laplace.hxx Generating XML output for file invert_parderiv.hxx Generating XML output for file lapack_routines.hxx Generating XML output for file mask.hxx Generating XML output for file msg_stack.hxx Generating XML output for file multiostream.hxx Generating XML output for file options.hxx Generating XML output for file options_netcdf.hxx Generating XML output for file optionsreader.hxx Generating XML output for file output.hxx Generating XML output for file parallel_boundary_op.hxx Generating XML output for file parallel_boundary_region.hxx Generating XML output for file band.h Generating XML output for file cvdiag.h Generating XML output for file cvode.h Generating XML output for file cvspgmr.h Generating XML output for file iterativ.h Generating XML output for file llnlmath.h Generating XML output for file llnltyps.h Generating XML output for file nvector.h Generating XML output for file pvbbdpre.h Generating XML output for file smalldense.h Generating XML output for file spgmr.h Generating XML output for file vector.h Generating XML output for file smoothing.hxx Generating XML output for file sourcex.hxx Generating XML output for file stencils.hxx Generating XML output for file unused.hxx Generating XML output for file utils.hxx Generating XML output for file vecops.hxx Generating XML output for file vector2d.hxx Generating XML output for file vector3d.hxx Generating XML output for file where.hxx Generating XML output for file bout++-time.cxx Generating XML output for file bout++-time.hxx Generating XML output for file bout++.cxx Generating XML output for file field.cxx Generating XML output for file field2d.cxx Generating XML output for file field3d.cxx Generating XML output for file field_data.cxx Generating XML output for file field_factory.cxx Generating XML output for file fieldgenerators.cxx Generating XML output for file fieldgenerators.hxx Generating XML output for file fieldgroup.cxx Generating XML output for file fieldperp.cxx Generating XML output for file gen_fieldops.py Generating XML output for file generated_fieldops.cxx Generating XML output for file globalfield.cxx Generating XML output for file initialprofiles.cxx Generating XML output for file vecops.cxx Generating XML output for file vector2d.cxx Generating XML output for file vector3d.cxx Generating XML output for file where.cxx Generating XML output for file datafile.cxx Generating XML output for file dataformat.cxx Generating XML output for file formatfactory.cxx Generating XML output for file formatfactory.hxx Generating XML output for file emptyformat.hxx Generating XML output for file h5_format.cxx Generating XML output for file h5_format.hxx Generating XML output for file nc_format.cxx Generating XML output for file nc_format.hxx Generating XML output for file ncxx4.cxx Generating XML output for file ncxx4.hxx Generating XML output for file pnetcdf.cxx Generating XML output for file pnetcdf.hxx Generating XML output for file fft_fftw.cxx Generating XML output for file lapack_routines.cxx Generating XML output for file cyclic_laplace.cxx Generating XML output for file cyclic_laplace.hxx Generating XML output for file multigrid_alg.cxx Generating XML output for file multigrid_laplace.cxx Generating XML output for file multigrid_laplace.hxx Generating XML output for file multigrid_solver.cxx /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/difops.hxx:198: warning: The following parameter of Grad2_par2(const Field2D &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT") is not documented: parameter 'method' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/difops.hxx:290: warning: The following parameter of Div_par_K_Grad_par(BoutReal kY, const Field2D &f, CELL_LOC outloc=CELL_DEFAULT) is not documented: parameter 'outloc' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/gyro_average.hxx:52: warning: argument 'flags' of command @param is not found in the argument list of gyroPade0(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/gyro_average.hxx:52: warning: The following parameters of gyroPade0(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) are not documented: parameter 'inner_boundary_flags' parameter 'outer_boundary_flags' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/gyro_average.hxx:84: warning: argument 'flags' of command @param is not found in the argument list of gyroPade1(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/gyro_average.hxx:84: warning: The following parameters of gyroPade1(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) are not documented: parameter 'inner_boundary_flags' parameter 'outer_boundary_flags' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/gyro_average.hxx:120: warning: argument 'flags' of command @param is not found in the argument list of gyroPade2(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/gyro_average.hxx:120: warning: The following parameters of gyroPade2(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) are not documented: parameter 'inner_boundary_flags' parameter 'outer_boundary_flags' Generating XML output for file mumps_laplace.cxx Generating XML output for file mumps_laplace.hxx Generating XML output for file naulin_laplace.cxx Generating XML output for file naulin_laplace.hxx Generating XML output for file pdd.cxx Generating XML output for file pdd.hxx Generating XML output for file petsc_laplace.cxx Generating XML output for file petsc_laplace.hxx Generating XML output for file serial_band.cxx Generating XML output for file serial_band.hxx Generating XML output for file serial_tri.cxx Generating XML output for file serial_tri.hxx Generating XML output for file shoot_laplace.cxx Generating XML output for file shoot_laplace.hxx Generating XML output for file spt.cxx Generating XML output for file spt.hxx Generating XML output for file invert_laplace.cxx Generating XML output for file laplacefactory.cxx Generating XML output for file laplacefactory.hxx Generating XML output for file laplacexy.cxx Generating XML output for file laplacexz-cyclic.cxx Generating XML output for file laplacexz-cyclic.hxx Generating XML output for file laplacexz-petsc.cxx Generating XML output for file laplacexz-petsc.hxx Generating XML output for file laplacexz.cxx Generating XML output for file cyclic.cxx Generating XML output for file cyclic.hxx Generating XML output for file invert_parderiv.cxx Generating XML output for file parderiv_factory.cxx Generating XML output for file boundary_factory.cxx Generating XML output for file boundary_region.cxx Generating XML output for file boundary_standard.cxx Generating XML output for file coordinates.cxx Generating XML output for file gridfromfile.cxx Generating XML output for file gridfromoptions.cxx Generating XML output for file difops.cxx Generating XML output for file fv_ops.cxx Generating XML output for file boutmesh.cxx Generating XML output for file boutmesh.hxx Generating XML output for file index_derivs.cxx Generating XML output for file interpolation.cxx Generating XML output for file bilinear.cxx Generating XML output for file hermite_spline.cxx Generating XML output for file interpolation_factory.cxx Generating XML output for file lagrange_4pt.cxx Generating XML output for file monotonic_hermite_spline.cxx Generating XML output for file mesh.cxx Generating XML output for file meshfactory.cxx Generating XML output for file meshfactory.hxx Generating XML output for file fci.cxx Generating XML output for file fci.hxx Generating XML output for file identity.cxx Generating XML output for file shiftedmetric.cxx Generating XML output for file parallel_boundary_op.cxx Generating XML output for file parallel_boundary_region.cxx Generating XML output for file surfaceiter.cxx Generating XML output for file gyro_average.cxx Generating XML output for file physicsmodel.cxx Generating XML output for file smoothing.cxx Generating XML output for file snb.cxx Generating XML output for file sourcex.cxx Generating XML output for file adams_bashforth.cxx Generating XML output for file adams_bashforth.hxx Generating XML output for file arkode.cxx Generating XML output for file arkode.hxx Generating XML output for file cvode.cxx Generating XML output for file cvode.hxx Generating XML output for file euler.cxx Generating XML output for file euler.hxx Generating XML output for file ida.cxx Generating XML output for file ida.hxx Generating XML output for file imex-bdf2.cxx Generating XML output for file imex-bdf2.hxx Generating XML output for file karniadakis.cxx Generating XML output for file karniadakis.hxx Generating XML output for file petsc.cxx Generating XML output for file petsc.hxx Generating XML output for file power.cxx Generating XML output for file power.hxx Generating XML output for file pvode.cxx Generating XML output for file pvode.hxx Generating XML output for file rk3-ssp.cxx Generating XML output for file rk3-ssp.hxx Generating XML output for file rk4.cxx Generating XML output for file rk4.hxx Generating XML output for file cashkarp.cxx Generating XML output for file cashkarp.hxx Generating XML output for file rk4simple.cxx Generating XML output for file rk4simple.hxx Generating XML output for file rkf34.cxx Generating XML output for file rkf34.hxx Generating XML output for file rkf45.cxx Generating XML output for file rkf45.hxx Generating XML output for file rkgeneric.cxx Generating XML output for file rkgeneric.hxx Generating XML output for file rkscheme.cxx Generating XML output for file rkschemefactory.cxx Generating XML output for file rkschemefactory.hxx Generating XML output for file slepc.cxx Generating XML output for file slepc.hxx Generating XML output for file snes.cxx Generating XML output for file snes.hxx Generating XML output for file split-rk.cxx Generating XML output for file split-rk.hxx Generating XML output for file solver.cxx Generating XML output for file solverfactory.cxx Generating XML output for file bout_types.cxx Generating XML output for file boutcomm.cxx Generating XML output for file boutexception.cxx Generating XML output for file derivs.cxx Generating XML output for file expressionparser.cxx Generating XML output for file msg_stack.cxx Generating XML output for file options.cxx Generating XML output for file optionparser.hxx Generating XML output for file options_ini.cxx Generating XML output for file options_ini.hxx Generating XML output for file options_netcdf.cxx Generating XML output for file optionsreader.cxx Generating XML output for file output.cxx Generating XML output for file petsclib.cxx Generating XML output for file range.cxx Generating XML output for file slepclib.cxx Generating XML output for file timer.cxx Generating XML output for file type_name.cxx Generating XML output for file utils.cxx Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/adams_bashforth/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/arkode/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/impls/bout/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rkgeneric/impls/cashkarp/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/cvode/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/cyclic/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplacexz/impls/cyclic/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/parderiv/impls/cyclic/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/data/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/euler/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/field/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/ida/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/imex-bdf2/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplacexz/impls/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/parderiv/impls/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/impls/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rkgeneric/impls/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/interpolation/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/invert/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/karniadakis/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplacexy/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplacexz/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/multigrid/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/mumps/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/naulin/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/options/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/parallel/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/parderiv/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/pdd/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/petsc/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplacexz/impls/petsc/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/petsc/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/physics/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/power/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/pvode/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/pvode/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rk3-ssp/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rk4/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rkgeneric/impls/rk4simple/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rkgeneric/impls/rkf34/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rkgeneric/impls/rkf45/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rkgeneric/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/serial_band/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/serial_tri/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/shoot/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/slepc/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/snes/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/split-rk/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/spt/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/sys/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/ Generating XML output for the main page Running plantuml with JAVA... type lookup cache used 18676/65536 hits=185173 misses=19455 symbol lookup cache used 21545/65536 hits=227687 misses=21545 finished... PYTHONPATH=../tools/pylib:$PYTHONPATH sphinx-build-3 -b html sphinx/ html/ Running Sphinx v5.3.0 WARNING: Invalid configuration value found: 'language = None'. Update your configuration to a valid language code. Falling back to 'en' (English). breathe module not installed recommonmark module not installed making output directory... done building [mo]: targets for 0 po files that are out of date building [html]: targets for 41 source files that are out of date updating environment: [new config] 41 added, 0 changed, 0 removed reading sources... [ 2%] _apidoc/boutdata reading sources... [ 4%] _apidoc/boututils No mlab available reading sources... [ 7%] _apidoc/zoidberg reading sources... [ 9%] api_reference reading sources... [ 12%] developer_docs/code_layout reading sources... [ 14%] developer_docs/contributing reading sources... [ 17%] developer_docs/data_types reading sources... [ 19%] developer_docs/file_io reading sources... [ 21%] developer_docs/git_basics reading sources... [ 24%] developer_docs/mesh reading sources... [ 26%] developer_docs/natural_language reading sources... [ 29%] developer_docs/performance_profiling reading sources... [ 31%] index reading sources... [ 34%] user_docs/BOUT_Gradperp_op reading sources... [ 36%] user_docs/advanced_install reading sources... [ 39%] user_docs/algebraic_operators reading sources... [ 41%] user_docs/boundary_options reading sources... [ 43%] user_docs/bout_functions_for_physics reading sources... [ 46%] user_docs/bout_options reading sources... [ 48%] user_docs/coordinates reading sources... [ 51%] user_docs/differential_operators reading sources... [ 53%] user_docs/eigenvalue_solver reading sources... [ 56%] user_docs/input_grids reading sources... [ 58%] user_docs/installing reading sources... [ 60%] user_docs/introduction reading sources... [ 63%] user_docs/invertable_operator reading sources... [ 65%] user_docs/laplacian reading sources... [ 68%] user_docs/makefiles reading sources... [ 70%] user_docs/nonlocal reading sources... [ 73%] user_docs/output_and_post reading sources... [ 75%] user_docs/parallel-transforms reading sources... [ 78%] user_docs/petsc reading sources... [ 80%] user_docs/physics_models reading sources... [ 82%] user_docs/preconditioning reading sources... [ 85%] user_docs/python reading sources... [ 87%] user_docs/python_boutcore reading sources... [ 90%] user_docs/running_bout reading sources... [ 92%] user_docs/staggered_grids reading sources... [ 95%] user_docs/testing reading sources... [ 97%] user_docs/time_integration reading sources... [100%] user_docs/variable_init /usr/lib/python3.11/site-packages/boutdata/collect.py:docstring of boutdata.collect:1: WARNING: duplicate object description of boutdata.collect, other instance in _apidoc/boutdata, use :noindex: for one of them WARNING: autodoc: failed to import module 'mayavi2' from module 'boutdata'; the following exception was raised: No module named 'enthought' /usr/lib/python3.11/site-packages/boutdata/__init__.py:docstring of boutdata:1: WARNING: duplicate object description of boutdata, other instance in _apidoc/boutdata, use :noindex: for one of them /usr/lib/python3.11/site-packages/boutdata/__init__.py:docstring of boutdata.collect.attributes:1: WARNING: duplicate object description of boutdata.attributes, other instance in _apidoc/boutdata, use :noindex: for one of them /usr/lib/python3.11/site-packages/boutdata/__init__.py:docstring of boutdata.collect.collect:1: WARNING: duplicate object description of boutdata.collect, other instance in _apidoc/boutdata, use :noindex: for one of them /usr/lib/python3.11/site-packages/boutdata/restart.py:docstring of boutdata.restart.normal:56: WARNING: Footnote [1] is not referenced. WARNING: autodoc: failed to import module 'analyse_equil_2' from module 'boututils'; the following exception was raised: No module named 'crosslines' WARNING: autodoc: failed to import module 'anim' from module 'boututils'; the following exception was raised: No module named 'tvtk' WARNING: autodoc: failed to import module 'boutgrid' from module 'boututils'; the following exception was raised: No module named 'tvtk' /usr/lib/python3.11/site-packages/boututils/calculus.py:docstring of boututils.calculus.deriv2D:14: ERROR: Unexpected indentation. WARNING: autodoc: failed to import module 'contour' from module 'boututils'; the following exception was raised: No module named 'boututils.contour' WARNING: autodoc: failed to import module 'crosslines' from module 'boututils'; the following exception was raised: No module named 'past' WARNING: autodoc: failed to import module 'efit_analyzer' from module 'boututils'; the following exception was raised: No module named 'past' looking for now-outdated files... WARNING: autodoc: failed to import module 'fft_deriv' from module 'boututils'; the following exception was raised: No module named 'past' WARNING: autodoc: failed to import module 'int_func' from module 'boututils'; the following exception was raised: No module named 'past' WARNING: autodoc: failed to import module 'mode_structure' from module 'boututils'; the following exception was raised: No module named 'past' WARNING: autodoc: failed to import module 'moment_xyzt' from module 'boututils'; the following exception was raised: No module named 'past' WARNING: autodoc: failed to import module 'plotpolslice' from module 'boututils'; the following exception was raised: No module named 'past' WARNING: autodoc: failed to import module 'radial_grid' from module 'boututils'; the following exception was raised: No module named 'past' WARNING: autodoc: failed to import module 'surface_average' from module 'boututils'; the following exception was raised: No module named 'past' WARNING: autodoc: failed to import module 'volume_integral' from module 'boututils'; the following exception was raised: No module named 'past' /usr/lib/python3.11/site-packages/boututils/__init__.py:docstring of boututils:1: WARNING: duplicate object description of boututils, other instance in _apidoc/boututils, use :noindex: for one of them /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tools/pylib/zoidberg/field.py:docstring of zoidberg.field.MagneticField.attributes:1: WARNING: duplicate object description of zoidberg.field.MagneticField.attributes, other instance in _apidoc/zoidberg, use :noindex: for one of them /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tools/pylib/zoidberg/field.py:docstring of zoidberg.field.MagneticField.boundary:1: WARNING: duplicate object description of zoidberg.field.MagneticField.boundary, other instance in _apidoc/zoidberg, use :noindex: for one of them /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tools/pylib/zoidberg/__init__.py:docstring of zoidberg:1: WARNING: duplicate object description of zoidberg, other instance in _apidoc/zoidberg, use :noindex: for one of them /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tools/pylib/zoidberg/__init__.py:docstring of zoidberg.zoidberg.make_maps:1: WARNING: duplicate object description of zoidberg.make_maps, other instance in _apidoc/zoidberg, use :noindex: for one of them /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tools/pylib/zoidberg/__init__.py:docstring of zoidberg.zoidberg.write_maps:1: WARNING: duplicate object description of zoidberg.write_maps, other instance in _apidoc/zoidberg, use :noindex: for one of them /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/api_reference.rst:4: WARNING: toctree glob pattern '_breathe_autogen/*' didn't match any documents /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/data_types.rst:75: WARNING: Definition list ends without a blank line; unexpected unindent. /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/user_docs/bout_options.rst:533: ERROR: Unexpected indentation. /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/user_docs/installing.rst:416: ERROR: Unexpected indentation. /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/user_docs/installing.rst:417: WARNING: Block quote ends without a blank line; unexpected unindent. /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/user_docs/nonlocal.rst:119: WARNING: malformed hyperlink target. /usr/lib/python3.11/site-packages/boututils/__init__.py:docstring of boututils:1: WARNING: duplicate object description of boututils, other instance in _apidoc/boututils, use :noindex: for one of them /usr/lib/python3.11/site-packages/boutdata/__init__.py:docstring of boutdata:1: WARNING: duplicate object description of boutdata, other instance in _apidoc/boutdata, use :noindex: for one of them /usr/lib/python3.11/site-packages/boutdata/__init__.py:docstring of boutdata.collect.attributes:1: WARNING: duplicate object description of boutdata.attributes, other instance in _apidoc/boutdata, use :noindex: for one of them /usr/lib/python3.11/site-packages/boutdata/__init__.py:docstring of boutdata.collect.collect:1: WARNING: duplicate object description of boutdata.collect, other instance in _apidoc/boutdata, use :noindex: for one of them WARNING: autodoc: failed to import module 'boutcore'; the following exception was raised: /usr/lib64/openmpi/lib/libpetsc.so.3.17: undefined symbol: H5Pset_dxpl_mpio WARNING: autodoc: failed to import module 'boutcore'; the following exception was raised: /usr/lib64/openmpi/lib/libpetsc.so.3.17: undefined symbol: H5Pset_dxpl_mpio WARNING: autodoc: failed to import module 'boutcore'; the following exception was raised: /usr/lib64/openmpi/lib/libpetsc.so.3.17: undefined symbol: H5Pset_dxpl_mpio /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/user_docs/running_bout.rst:445: WARNING: Literal block expected; none found. none found pickling environment... done checking consistency... done preparing documents... done writing output... [ 2%] _apidoc/boutdata writing output... [ 4%] _apidoc/boututils writing output... [ 7%] _apidoc/zoidberg writing output... [ 9%] api_reference writing output... [ 12%] developer_docs/code_layout writing output... [ 14%] developer_docs/contributing writing output... [ 17%] developer_docs/data_types writing output... [ 19%] developer_docs/file_io writing output... [ 21%] developer_docs/git_basics writing output... [ 24%] developer_docs/mesh writing output... [ 26%] developer_docs/natural_language writing output... [ 29%] developer_docs/performance_profiling writing output... [ 31%] index writing output... [ 34%] user_docs/BOUT_Gradperp_op writing output... [ 36%] user_docs/advanced_install writing output... [ 39%] user_docs/algebraic_operators writing output... [ 41%] user_docs/boundary_options writing output... [ 43%] user_docs/bout_functions_for_physics writing output... [ 46%] user_docs/bout_options writing output... [ 48%] user_docs/coordinates writing output... [ 51%] user_docs/differential_operators writing output... [ 53%] user_docs/eigenvalue_solver writing output... [ 56%] user_docs/input_grids writing output... [ 58%] user_docs/installing writing output... [ 60%] user_docs/introduction writing output... [ 63%] user_docs/invertable_operator writing output... [ 65%] user_docs/laplacian writing output... [ 68%] user_docs/makefiles writing output... [ 70%] user_docs/nonlocal writing output... [ 73%] user_docs/output_and_post writing output... [ 75%] user_docs/parallel-transforms writing output... [ 78%] user_docs/petsc writing output... [ 80%] user_docs/physics_models writing output... [ 82%] user_docs/preconditioning writing output... [ 85%] user_docs/python writing output... [ 87%] user_docs/python_boutcore writing output... [ 90%] user_docs/running_bout writing output... [ 92%] user_docs/staggered_grids writing output... [ 95%] user_docs/testing writing output... [ 97%] user_docs/time_integration writing output... [100%] user_docs/variable_init /usr/lib/python3.11/site-packages/boutdata/restart.py:docstring of boutdata.restart.addnoise:1: WARNING: Unparseable C++ cross-reference: 'numpy.random.Generator.normal' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected end of definition. [error at 5] numpy.random.Generator.normal -----^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expecting "(" in parameters-and-qualifiers. [error at 5] numpy.random.Generator.normal -----^ If the function has a return type: Error in declarator or parameters-and-qualifiers If pointer to member declarator: Invalid C++ declaration: Expected identifier in nested name. [error at 5] numpy.random.Generator.normal -----^ If declarator-id: Invalid C++ declaration: Expected identifier in nested name. [error at 5] numpy.random.Generator.normal -----^ /usr/lib/python3.11/site-packages/boutdata/restart.py:docstring of boutdata.restart.addnoise:1: WARNING: Unparseable C++ cross-reference: 'numpy.random.Generator' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected end of definition. [error at 5] numpy.random.Generator -----^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expecting "(" in parameters-and-qualifiers. [error at 5] numpy.random.Generator -----^ If the function has a return type: Error in declarator or parameters-and-qualifiers If pointer to member declarator: Invalid C++ declaration: Expected identifier in nested name. [error at 5] numpy.random.Generator -----^ If declarator-id: Invalid C++ declaration: Expected identifier in nested name. [error at 5] numpy.random.Generator -----^ /usr/lib/python3.11/site-packages/boutdata/restart.py:docstring of boutdata.restart.addnoise:1: WARNING: undefined label: 'random-quick-start' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:81: WARNING: unknown document: '../_breathe_autogen/file/bout_09_09_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:87: WARNING: unknown document: '../_breathe_autogen/file/field2d_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:93: WARNING: unknown document: '../_breathe_autogen/file/field3d_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:100: WARNING: unknown document: '../_breathe_autogen/file/field__data_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:105: WARNING: unknown document: '../_breathe_autogen/file/fieldperp_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:112: WARNING: unknown document: '../_breathe_autogen/file/initialprofiles_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:117: WARNING: unknown document: '../_breathe_autogen/file/vecops_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:117: WARNING: unknown document: '../_breathe_autogen/file/difops_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:124: WARNING: unknown document: '../_breathe_autogen/file/vector2d_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:129: WARNING: unknown document: '../_breathe_autogen/file/vector3d_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:133: WARNING: unknown document: '../_breathe_autogen/file/where_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:139: WARNING: unknown document: '../_breathe_autogen/file/datafile_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:145: WARNING: unknown document: '../_breathe_autogen/file/formatfactory_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:147: WARNING: unknown document: '../_breathe_autogen/file/formatfactory_8hxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:151: WARNING: unknown document: '../_breathe_autogen/file/emptyformat_8hxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:155: WARNING: unknown document: '../_breathe_autogen/file/h5__format_8cxx' generating indices... /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:158: WARNING: unknown document: '../_breathe_autogen/file/h5__format_8hxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:162: WARNING: unknown document: '../_breathe_autogen/file/nc__format_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:165: WARNING: unknown document: '../_breathe_autogen/file/nc__format_8hxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:169: WARNING: unknown document: '../_breathe_autogen/file/ncxx4_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:173: WARNING: unknown document: '../_breathe_autogen/file/ncxx4_8hxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:177: WARNING: unknown document: '../_breathe_autogen/file/pnetcdf_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:180: WARNING: unknown document: '../_breathe_autogen/file/pnetcdf_8hxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:184: WARNING: unknown document: '../_breathe_autogen/file/fft__fftw_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:184: WARNING: unknown document: '../_breathe_autogen/file/fft_8hxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:193: WARNING: unknown document: '../_breathe_autogen/file/invert__laplace_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:195: WARNING: unknown document: '../_breathe_autogen/file/laplacefactory_8hxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:197: WARNING: unknown document: '../_breathe_autogen/file/laplacefactory_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:203: WARNING: unknown document: '../_breathe_autogen/file/serial__tri_8hxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:205: WARNING: unknown document: '../_breathe_autogen/file/serial__tri_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:209: WARNING: unknown document: '../_breathe_autogen/file/serial__band_8hxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:211: WARNING: unknown document: '../_breathe_autogen/file/serial__band_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:215: WARNING: unknown document: '../_breathe_autogen/file/spt_8hxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:217: WARNING: unknown document: '../_breathe_autogen/file/spt_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:221: WARNING: unknown document: '../_breathe_autogen/file/pdd_8hxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:223: WARNING: unknown document: '../_breathe_autogen/file/pdd_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:228: WARNING: unknown document: '../_breathe_autogen/file/invert__parderiv_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:232: WARNING: unknown document: '../_breathe_autogen/file/parderiv__factory_8hxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:234: WARNING: unknown document: '../_breathe_autogen/file/parderiv__factory_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:240: WARNING: unknown document: '../_breathe_autogen/file/serial_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:242: WARNING: unknown document: '../_breathe_autogen/file/serial_8hxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:246: WARNING: unknown document: '../_breathe_autogen/file/cyclic_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:248: WARNING: unknown document: '../_breathe_autogen/file/cyclic_8hxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:252: WARNING: unknown document: '../_breathe_autogen/file/lapack__routines_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:256: WARNING: unknown document: '../_breathe_autogen/file/boundary__factory_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:260: WARNING: unknown document: '../_breathe_autogen/file/boundary__region_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:265: WARNING: unknown document: '../_breathe_autogen/file/boundary__standard_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:269: WARNING: unknown document: '../_breathe_autogen/file/difops_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:269: WARNING: unknown document: '../_breathe_autogen/file/derivs_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:274: WARNING: unknown document: '../_breathe_autogen/file/interpolation_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:277: WARNING: unknown document: '../_breathe_autogen/file/mesh_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:285: WARNING: unknown document: '../_breathe_autogen/file/boutmesh_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:289: WARNING: unknown document: '../_breathe_autogen/file/boutmesh_8hxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:294: WARNING: unknown document: '../_breathe_autogen/file/gyro__average_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:296: WARNING: unknown document: '../_breathe_autogen/file/smoothing_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:299: WARNING: unknown document: '../_breathe_autogen/file/sourcex_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:305: WARNING: unknown document: '../_breathe_autogen/file/solver_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:308: WARNING: unknown document: '../_breathe_autogen/file/solverfactory_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:311: WARNING: unknown document: '../_breathe_autogen/file/solverfactory_8hxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:317: WARNING: unknown document: '../_breathe_autogen/file/cvode_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:321: WARNING: unknown document: '../_breathe_autogen/file/cvode_8hxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:325: WARNING: unknown document: '../_breathe_autogen/file/ida_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:329: WARNING: unknown document: '../_breathe_autogen/file/ida_8hxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:333: WARNING: unknown document: '../_breathe_autogen/file/petsc_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:336: WARNING: unknown document: '../_breathe_autogen/file/petsc_8hxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:340: WARNING: unknown document: '../_breathe_autogen/file/pvode_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:344: WARNING: unknown document: '../_breathe_autogen/file/pvode_8hxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:348: WARNING: unknown document: '../_breathe_autogen/file/boutcomm_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:350: WARNING: unknown document: '../_breathe_autogen/file/boutexception_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:353: WARNING: unknown document: '../_breathe_autogen/file/derivs_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:353: WARNING: unknown document: '../_breathe_autogen/file/difops_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:353: WARNING: undefined label: 'sec-derivatives' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:359: WARNING: unknown document: '../_breathe_autogen/file/msg__stack_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:366: WARNING: unknown document: '../_breathe_autogen/file/options_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:370: WARNING: unknown document: '../_breathe_autogen/file/optionsreader_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:372: WARNING: unknown document: '../_breathe_autogen/file/output_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:374: WARNING: unknown document: '../_breathe_autogen/file/range_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:378: WARNING: unknown document: '../_breathe_autogen/file/stencils_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:382: WARNING: unknown document: '../_breathe_autogen/file/timer_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:386: WARNING: unknown document: '../_breathe_autogen/file/utils_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:392: WARNING: unknown document: '../_breathe_autogen/file/optionparser_8hxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:394: WARNING: unknown document: '../_breathe_autogen/file/options__ini_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:396: WARNING: unknown document: '../_breathe_autogen/file/options__ini_8hxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/data_types.rst:385: WARNING: Unparseable C++ cross-reference: 'mesh:maxregionblocksize' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected end of definition. [error at 4] mesh:maxregionblocksize ----^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expecting "(" in parameters-and-qualifiers. [error at 4] mesh:maxregionblocksize ----^ If the function has a return type: Error in declarator or parameters-and-qualifiers If pointer to member declarator: Invalid C++ declaration: Expected identifier in nested name. [error at 4] mesh:maxregionblocksize ----^ If declarator-id: Invalid C++ declaration: Expected identifier in nested name. [error at 4] mesh:maxregionblocksize ----^ /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/data_types.rst:385: WARNING: Unparseable C++ cross-reference: 'BOUT.inp' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected end of definition. [error at 4] BOUT.inp ----^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expecting "(" in parameters-and-qualifiers. [error at 4] BOUT.inp ----^ If the function has a return type: Error in declarator or parameters-and-qualifiers If pointer to member declarator: Invalid C++ declaration: Expected identifier in nested name. [error at 4] BOUT.inp ----^ If declarator-id: Invalid C++ declaration: Expected identifier in nested name. [error at 4] BOUT.inp ----^ /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/file_io.rst:4: WARNING: unknown document: '../_breathe_autogen/file/griddata_8hxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/file_io.rst:4: WARNING: unknown document: '../_breathe_autogen/file/datafile_8hxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/file_io.rst:4: WARNING: unknown document: '../_breathe_autogen/file/datafile_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/file_io.rst:13: WARNING: unknown document: '../_breathe_autogen/file/dataformat_8hxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/file_io.rst:268: WARNING: Unparseable C++ cross-reference: 'restart.redistribute' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected end of definition. [error at 7] restart.redistribute -------^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expecting "(" in parameters-and-qualifiers. [error at 7] restart.redistribute -------^ If the function has a return type: Error in declarator or parameters-and-qualifiers If pointer to member declarator: Invalid C++ declaration: Expected identifier in nested name. [error at 7] restart.redistribute -------^ If declarator-id: Invalid C++ declaration: Expected identifier in nested name. [error at 7] restart.redistribute -------^ /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/mesh.rst:31: WARNING: unknown document: '../_breathe_autogen/file/bout_09_09_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/user_docs/algebraic_operators.rst:8: WARNING: unknown document: '../_breathe_autogen/file/field2d_8hxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/user_docs/algebraic_operators.rst:8: WARNING: unknown document: '../_breathe_autogen/file/field3d_8hxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/user_docs/algebraic_operators.rst:8: WARNING: unknown document: '../_breathe_autogen/file/fieldperp_8hxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/user_docs/differential_operators.rst:182: WARNING: Unparseable C++ cross-reference: 'return\n0.5*(f.p - f.m);' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected identifier in nested name, got keyword: return [error at 6] return 0.5*(f.p - f.m); ------^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expected identifier in nested name, got keyword: return [error at 6] return 0.5*(f.p - f.m); ------^ If the function has a return type: Invalid C++ declaration: Expected identifier in nested name, got keyword: return [error at 6] return 0.5*(f.p - f.m); ------^ /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/user_docs/differential_operators.rst:192: WARNING: Unparseable C++ cross-reference: '"C2"' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected identifier in nested name. [error at 0] "C2" ^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expected identifier in nested name. [error at 0] "C2" ^ If the function has a return type: Invalid C++ declaration: Expected identifier in nested name. [error at 0] "C2" ^ /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/user_docs/differential_operators.rst:196: WARNING: Unparseable C++ cross-reference: '1' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected identifier in nested name. [error at 0] 1 ^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expected identifier in nested name. [error at 0] 1 ^ If the function has a return type: Invalid C++ declaration: Expected identifier in nested name. [error at 0] 1 ^ /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/user_docs/differential_operators.rst:221: WARNING: Unparseable C++ cross-reference: 'REGISTER_DERIVATIVE(DDX_C2)()' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected end of definition. [error at 19] REGISTER_DERIVATIVE(DDX_C2)() -------------------^ If full function ref: Error when parsing function declaration. If the function has no return type: Invalid C++ declaration: Expected end of definition or ;. [error at 27] REGISTER_DERIVATIVE(DDX_C2)() ---------------------------^ If the function has a return type: Error in declarator If declarator-id with parameters-and-qualifiers: Invalid C++ declaration: Expected identifier in nested name. [error at 19] REGISTER_DERIVATIVE(DDX_C2)() -------------------^ If parenthesis in noptr-declarator: Error in declarator or parameters-and-qualifiers If pointer to member declarator: Invalid C++ declaration: Expected '::' in pointer to member (function). [error at 26] REGISTER_DERIVATIVE(DDX_C2)() --------------------------^ If declarator-id: Invalid C++ declaration: Expecting "(" in parameters-and-qualifiers. [error at 26] REGISTER_DERIVATIVE(DDX_C2)() --------------------------^ /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/user_docs/differential_operators.rst:238: WARNING: Unparseable C++ cross-reference: '"C2"' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected identifier in nested name. [error at 0] "C2" ^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expected identifier in nested name. [error at 0] "C2" ^ If the function has a return type: Invalid C++ declaration: Expected identifier in nested name. [error at 0] "C2" ^ /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/user_docs/differential_operators.rst:530: WARNING: unknown document: '../_breathe_autogen/file/fv__ops_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/user_docs/differential_operators.rst:538: WARNING: unknown document: '../_breathe_autogen/file/fv__ops_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/user_docs/differential_operators.rst:278: WARNING: Could not lex literal_block as "cpp". Highlighting skipped. /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/user_docs/installing.rst:190: WARNING: Unparseable C++ cross-reference: 'export LC_CTYPE=C.utf8' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected identifier in nested name, got keyword: export [error at 6] export LC_CTYPE=C.utf8 ------^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expected identifier in nested name, got keyword: export [error at 6] export LC_CTYPE=C.utf8 ------^ If the function has a return type: Invalid C++ declaration: Expected identifier in nested name, got keyword: export [error at 6] export LC_CTYPE=C.utf8 ------^ /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/user_docs/installing.rst:423: WARNING: Unparseable C++ cross-reference: '-DBOUT_IGNORE_CONDA_ENV=ON' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected identifier in nested name. [error at 0] -DBOUT_IGNORE_CONDA_ENV=ON ^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expected identifier in nested name. [error at 0] -DBOUT_IGNORE_CONDA_ENV=ON ^ If the function has a return type: Invalid C++ declaration: Expected identifier in nested name. [error at 0] -DBOUT_IGNORE_CONDA_ENV=ON ^ /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/user_docs/installing.rst:436: WARNING: Failed to create a cross reference. A title or caption not found: 'sec-install-bout' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/user_docs/invertable_operator.rst:30: WARNING: Unparseable C++ cross-reference: 'examples/invertable_operator' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected end of definition. [error at 8] examples/invertable_operator --------^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expecting "(" in parameters-and-qualifiers. [error at 8] examples/invertable_operator --------^ If the function has a return type: Error in declarator or parameters-and-qualifiers If pointer to member declarator: Invalid C++ declaration: Expected identifier in nested name. [error at 8] examples/invertable_operator --------^ If declarator-id: Invalid C++ declaration: Expected identifier in nested name. [error at 8] examples/invertable_operator --------^ /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/user_docs/invertable_operator.rst:98: WARNING: Unparseable C++ cross-reference: '-invertable' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected identifier in nested name. [error at 0] -invertable ^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expected identifier in nested name. [error at 0] -invertable ^ If the function has a return type: Invalid C++ declaration: Expected identifier in nested name. [error at 0] -invertable ^ /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/user_docs/invertable_operator.rst:98: WARNING: Unparseable C++ cross-reference: '-ksp_type' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected identifier in nested name. [error at 0] -ksp_type ^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expected identifier in nested name. [error at 0] -ksp_type ^ If the function has a return type: Invalid C++ declaration: Expected identifier in nested name. [error at 0] -ksp_type ^ /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/user_docs/invertable_operator.rst:98: WARNING: Unparseable C++ cross-reference: '-invertable_ksp_type' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected identifier in nested name. [error at 0] -invertable_ksp_type ^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expected identifier in nested name. [error at 0] -invertable_ksp_type ^ If the function has a return type: Invalid C++ declaration: Expected identifier in nested name. [error at 0] -invertable_ksp_type ^ /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/user_docs/laplacian.rst:186: WARNING: unknown document: '../_breathe_autogen/file/invert__laplace_8cxx' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/user_docs/nonlocal.rst:117: WARNING: undefined label: 'tab-snb-options' /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/user_docs/output_and_post.rst:659: WARNING: Unparseable C++ cross-reference: '"zzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzz"' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected identifier in nested name. [error at 0] "zzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzz" ^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expected identifier in nested name. [error at 0] "zzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzz" ^ If the function has a return type: Invalid C++ declaration: Expected identifier in nested name. [error at 0] "zzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzz" ^ /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/user_docs/output_and_post.rst:587: WARNING: Could not lex literal_block as "mathematica". Highlighting skipped. /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/user_docs/running_bout.rst:119: WARNING: Unparseable C++ cross-reference: 'https://xbout.readthedocs.io/en/latest' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected end of definition. [error at 5] https://xbout.readthedocs.io/en/latest -----^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expecting "(" in parameters-and-qualifiers. [error at 5] https://xbout.readthedocs.io/en/latest -----^ If the function has a return type: Error in declarator or parameters-and-qualifiers If pointer to member declarator: Invalid C++ declaration: Expected identifier in nested name. [error at 5] https://xbout.readthedocs.io/en/latest -----^ If declarator-id: Invalid C++ declaration: Expected identifier in nested name. [error at 5] https://xbout.readthedocs.io/en/latest -----^ /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/user_docs/running_bout.rst:464: WARNING: Unparseable C++ cross-reference: 'https://en.wikipedia.org/wiki/Universally_unique_identifier' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected end of definition. [error at 5] https://en.wikipedia.org/wiki/Universally_unique_identifier -----^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expecting "(" in parameters-and-qualifiers. [error at 5] https://en.wikipedia.org/wiki/Universally_unique_identifier -----^ If the function has a return type: Error in declarator or parameters-and-qualifiers If pointer to member declarator: Invalid C++ declaration: Expected identifier in nested name. [error at 5] https://en.wikipedia.org/wiki/Universally_unique_identifier -----^ If declarator-id: Invalid C++ declaration: Expected identifier in nested name. [error at 5] https://en.wikipedia.org/wiki/Universally_unique_identifier -----^ /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/user_docs/running_bout.rst:537: WARNING: Unparseable C++ cross-reference: 'https://xbout.readthedocs.io/en/latest' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected end of definition. [error at 5] https://xbout.readthedocs.io/en/latest -----^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expecting "(" in parameters-and-qualifiers. [error at 5] https://xbout.readthedocs.io/en/latest -----^ If the function has a return type: Error in declarator or parameters-and-qualifiers If pointer to member declarator: Invalid C++ declaration: Expected identifier in nested name. [error at 5] https://xbout.readthedocs.io/en/latest -----^ If declarator-id: Invalid C++ declaration: Expected identifier in nested name. [error at 5] https://xbout.readthedocs.io/en/latest -----^ /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/user_docs/running_bout.rst:537: WARNING: Unparseable C++ cross-reference: 'https://xbout.readthedocs.io/en/latest/xbout.html#xbout.boutdataset.BoutDatasetAccessor.to_restart' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected end of definition. [error at 5] https://xbout.readthedocs.io/en/latest/xbout.html#xbout.boutdataset.BoutDatasetAccessor.to_restart -----^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expecting "(" in parameters-and-qualifiers. [error at 5] https://xbout.readthedocs.io/en/latest/xbout.html#xbout.boutdataset.BoutDatasetAccessor.to_restart -----^ If the function has a return type: Error in declarator or parameters-and-qualifiers If pointer to member declarator: Invalid C++ declaration: Expected identifier in nested name. [error at 5] https://xbout.readthedocs.io/en/latest/xbout.html#xbout.boutdataset.BoutDatasetAccessor.to_restart -----^ If declarator-id: Invalid C++ declaration: Expected identifier in nested name. [error at 5] https://xbout.readthedocs.io/en/latest/xbout.html#xbout.boutdataset.BoutDatasetAccessor.to_restart -----^ /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/user_docs/time_integration.rst:366: WARNING: Unparseable C++ cross-reference: 'predictor = false' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected end of definition. [error at 10] predictor = false ----------^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expecting "(" in parameters-and-qualifiers. [error at 10] predictor = false ----------^ If the function has a return type: Error in declarator or parameters-and-qualifiers If pointer to member declarator: Invalid C++ declaration: Expected identifier in nested name. [error at 10] predictor = false ----------^ If declarator-id: Invalid C++ declaration: Expected identifier in nested name. [error at 10] predictor = false ----------^ /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/user_docs/time_integration.rst:960: WARNING: unknown document: '../_breathe_autogen/file/bout_09_09_8cxx' genindex py-modindex done writing additional pages... search done copying images... [ 4%] figs/layout1.png copying images... [ 8%] figs/layout2.png copying images... [ 13%] figs/memory.png copying images... [ 17%] figs/fluid_norm_mc.png copying images... [ 21%] figs/diffStencils.png copying images... [ 26%] figs/topology_cross_section.png copying images... [ 30%] figs/topology_schematic.png copying images... [ 34%] figs/boutmesh-comms.png copying images... [ 39%] figs/grid_gen.png copying images... [ 43%] figs/zoidberg/elliptic_grid.png copying images... [ 47%] figs/zoidberg/poincare.png copying images... [ 52%] figs/5PointStencilMesh.png copying images... [ 56%] figs/5PointStencilMeshWithStencil.png copying images... [ 60%] figs/5PointStencilMatrix.png copying images... [ 65%] figs/5PointStencilGlobalIndices.png copying images... [ 69%] figs/par_laplace.png copying images... [ 73%] figs/snb-sinusoidal.png copying images... [ 78%] figs/snb-step.png copying images... [ 82%] figs/interchange_inst_test.png copying images... [ 86%] figs/sod_result.png copying images... [ 91%] figs/folder_tree.png copying images... [ 95%] figs/stagLocations.png copying images... [100%] figs/init_balloon.png copying static files... done copying extra files... done dumping search index in English (code: en)... done dumping object inventory... done build succeeded, 164 warnings. The HTML pages are in html. Documentation available in file:///builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/html/index.html make: Leaving directory '/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual' + '[' openmpi = mpich ']' + '[' openmpi = openmpi ']' + . /etc/profile.d/modules.sh ++ '[' -n /bin/sh ']' ++ '[' sh = sh ']' ++ shell=sh ++ '[' -f /usr/share/Modules/init/sh ']' ++ . /usr/share/Modules/init/sh +++ unset _mlshdbg +++ '[' 0 = 1 ']' +++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD' +++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD' +++ unset _mlre _mlIFS +++ '[' -n x ']' +++ _mlIFS=' ' +++ IFS=' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' ++++ eval 'echo ${LD_LIBRARY_PATH+x}' +++++ echo x +++ '[' -n x ']' ++++ eval 'echo ${LD_LIBRARY_PATH}' +++++ echo /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/lib +++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/lib'\'' ' +++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH ++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}' +++++ echo +++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_PRELOAD = LD_PRELOAD ']' +++ '[' LD_PRELOAD = LD_PRELOAD ']' ++++ eval 'echo ${LD_PRELOAD+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_PRELOAD ++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}' +++++ echo +++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' +++ '[' -n '__MODULES_QUAR_LD_LIBRARY_PATH='\''/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']' +++ _mlre='eval __MODULES_QUAR_LD_LIBRARY_PATH='\''/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 ' ++++ eval '__MODULES_QUAR_LD_LIBRARY_PATH='\''/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/lib'\''' 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++++ __MODULES_QUAR_LD_LIBRARY_PATH=/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/lib +++++ LD_LIBRARY_PATH= +++++ LD_PRELOAD= +++++ __MODULES_QUARANTINE_SET=1 +++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++ _mlcode='_module_raw() { eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")"; _mlstatus=$?; return $_mlstatus; }; module() { local _mlredir=0; if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then _mlredir=0; elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then _mlredir=1; fi; fi; case " $@ " in *'\'' --no-redirect '\''*) _mlredir=0 ;; *'\'' --redirect '\''*) _mlredir=1 ;; esac; if [ $_mlredir -eq 0 ]; then _module_raw "$@"; else _module_raw "$@" 2>&1; fi; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; unset __MODULES_AUTOINIT_INPROGRESS; MODULESHOME=/usr/share/Modules; export MODULESHOME; test 0;' +++ _mlret=0 +++ '[' -n x ']' +++ IFS=' ' +++ unset _mlIFS +++ unset _mlre _mlv _mlrv +++ '[' 0 -eq 0 ']' +++ eval '_module_raw() { eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")"; _mlstatus=$?; return $_mlstatus; }; module() { local _mlredir=0; if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then _mlredir=0; elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then _mlredir=1; fi; fi; case " $@ " in *'\'' --no-redirect '\''*) _mlredir=0 ;; *'\'' --redirect '\''*) _mlredir=1 ;; esac; if [ $_mlredir -eq 0 ]; then _module_raw "$@"; else _module_raw "$@" 2>&1; fi; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; unset __MODULES_AUTOINIT_INPROGRESS; MODULESHOME=/usr/share/Modules; export MODULESHOME; test 0;' ++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl ++++ export MODULES_CMD ++++ unset __MODULES_AUTOINIT_INPROGRESS ++++ MODULESHOME=/usr/share/Modules ++++ export MODULESHOME ++++ test 0 +++ '[' /bin/sh '!=' '' ']' +++ export -f _module_raw +++ export -f module ++++ type -t ml +++ '[' function = function ']' +++ export -f ml +++ unset _mlcode _mlret +++ '[' -n '' ']' + module unload mpi/openmpi-x86_64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw unload mpi/openmpi-x86_64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh unload mpi/openmpi-x86_64 + eval 'unset MPI_COMPILER; LD_LIBRARY_PATH=/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/lib; export LD_LIBRARY_PATH; MANPATH=/usr/share/man:; export MANPATH; unset MPI_INCLUDE; unset MPI_MAN; unset _LMFILES_; unset LOADEDMODULES; PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH; unset MPI_PYTHON3_SITEARCH; unset MPI_HOME; unset MPI_FORTRAN_MOD_DIR; unset __MODULES_LMALTNAME; unset __MODULES_LMCONFLICT; __MODULES_SHARE_MANPATH=:1; export __MODULES_SHARE_MANPATH; unset MPI_SUFFIX; unset MPI_SYSCONFIG; __MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH; unset MPI_LIB; PATH=/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH; unset MPI_BIN; test 0;' ~/build/BUILD/BOUT++-v4.4.2 ++ unset MPI_COMPILER ++ LD_LIBRARY_PATH=/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/lib ++ export LD_LIBRARY_PATH ++ MANPATH=/usr/share/man: ++ export MANPATH ++ unset MPI_INCLUDE ++ unset MPI_MAN ++ unset _LMFILES_ ++ unset LOADEDMODULES ++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_HOME ++ unset MPI_FORTRAN_MOD_DIR ++ unset __MODULES_LMALTNAME ++ unset __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:1 ++ export __MODULES_SHARE_MANPATH ++ unset MPI_SUFFIX ++ unset MPI_SYSCONFIG ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ unset MPI_LIB ++ PATH=/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ unset MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + popd + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.x2YzlK + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64 ++ dirname /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS ~/build/BUILD/BOUT++-v4.4.2/build_mpich ~/build/BUILD/BOUT++-v4.4.2 + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd BOUT++-v4.4.2 + for mpi in mpich openmpi + pushd build_mpich + '[' mpich = mpich ']' + . /etc/profile.d/modules.sh ++ '[' -n /bin/sh ']' ++ '[' sh = sh ']' ++ shell=sh ++ '[' -f /usr/share/Modules/init/sh ']' ++ . /usr/share/Modules/init/sh +++ unset _mlshdbg +++ '[' 0 = 1 ']' +++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD' +++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD' +++ unset _mlre _mlIFS +++ '[' -n x ']' +++ _mlIFS=' ' +++ IFS=' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' ++++ eval 'echo ${LD_LIBRARY_PATH+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH ++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}' +++++ echo +++ _mlre='LD_LIBRARY_PATH='\'''\'' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_PRELOAD = LD_PRELOAD ']' +++ '[' LD_PRELOAD = LD_PRELOAD ']' ++++ eval 'echo ${LD_PRELOAD+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_PRELOAD ++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}' +++++ echo +++ _mlre='LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' +++ '[' -n 'LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']' +++ _mlre='eval LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 ' ++++ eval 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++++ LD_LIBRARY_PATH= +++++ LD_PRELOAD= +++++ __MODULES_QUARANTINE_SET=1 +++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++ _mlcode='_module_raw() { eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")"; _mlstatus=$?; return $_mlstatus; }; module() { local _mlredir=0; if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then _mlredir=0; elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then _mlredir=1; fi; fi; case " $@ " in *'\'' --no-redirect '\''*) _mlredir=0 ;; *'\'' --redirect '\''*) _mlredir=1 ;; esac; if [ $_mlredir -eq 0 ]; then _module_raw "$@"; else _module_raw "$@" 2>&1; fi; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; unset __MODULES_AUTOINIT_INPROGRESS; MODULESHOME=/usr/share/Modules; export MODULESHOME; test 0;' +++ _mlret=0 +++ '[' -n x ']' +++ IFS=' ' +++ unset _mlIFS +++ unset _mlre _mlv _mlrv +++ '[' 0 -eq 0 ']' +++ eval '_module_raw() { eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")"; _mlstatus=$?; return $_mlstatus; }; module() { local _mlredir=0; if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then _mlredir=0; elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then _mlredir=1; fi; fi; case " $@ " in *'\'' --no-redirect '\''*) _mlredir=0 ;; *'\'' --redirect '\''*) _mlredir=1 ;; esac; if [ $_mlredir -eq 0 ]; then _module_raw "$@"; else _module_raw "$@" 2>&1; fi; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; unset __MODULES_AUTOINIT_INPROGRESS; MODULESHOME=/usr/share/Modules; export MODULESHOME; test 0;' ++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl ++++ export MODULES_CMD ++++ unset __MODULES_AUTOINIT_INPROGRESS ++++ MODULESHOME=/usr/share/Modules ++++ export MODULESHOME ++++ test 0 +++ '[' /bin/sh '!=' '' ']' +++ export -f _module_raw +++ export -f module ++++ type -t ml +++ '[' function = function ']' +++ export -f ml +++ unset _mlcode _mlret +++ '[' -n '' ']' + module load mpi/mpich-x86_64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw load mpi/mpich-x86_64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh load mpi/mpich-x86_64 + eval 'LD_LIBRARY_PATH=/usr/lib64/mpich/lib; export LD_LIBRARY_PATH; MPI_COMPILER=mpich-x86_64; export MPI_COMPILER; MANPATH=/usr/share/man/mpich-x86_64:/usr/share/man:; export MANPATH; MPI_INCLUDE=/usr/include/mpich-x86_64; export MPI_INCLUDE; MPI_MAN=/usr/share/man/mpich-x86_64; export MPI_MAN; MPI_PYTHON_SITEARCH=%\{python2_sitearch\}/mpich; export MPI_PYTHON_SITEARCH; _LMFILES_=/usr/share/modulefiles/mpi/mpich-x86_64; export _LMFILES_; LOADEDMODULES=mpi/mpich-x86_64; export LOADEDMODULES; PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH; MPI_PYTHON3_SITEARCH=/usr/lib64/python3.11/site-packages/mpich; export MPI_PYTHON3_SITEARCH; MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich; export MPI_FORTRAN_MOD_DIR; MPI_HOME=/usr/lib64/mpich; export MPI_HOME; __MODULES_LMCONFLICT=mpi/mpich-x86_64\&mpi; export __MODULES_LMCONFLICT; __MODULES_SHARE_MANPATH=:2; export __MODULES_SHARE_MANPATH; MPI_SYSCONFIG=/etc/mpich-x86_64; export MPI_SYSCONFIG; MPI_SUFFIX=_mpich; export MPI_SUFFIX; __MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH; MPI_PYTHON2_SITEARCH=%\{python2_sitearch\}/mpich; export MPI_PYTHON2_SITEARCH; MPI_LIB=/usr/lib64/mpich/lib; export MPI_LIB; PATH=/usr/lib64/mpich/bin:/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH; MPI_BIN=/usr/lib64/mpich/bin; export MPI_BIN; test 0;' ++ LD_LIBRARY_PATH=/usr/lib64/mpich/lib ++ export LD_LIBRARY_PATH ++ MPI_COMPILER=mpich-x86_64 ++ export MPI_COMPILER ++ MANPATH=/usr/share/man/mpich-x86_64:/usr/share/man: ++ export MANPATH ++ MPI_INCLUDE=/usr/include/mpich-x86_64 ++ export MPI_INCLUDE ++ MPI_MAN=/usr/share/man/mpich-x86_64 ++ export MPI_MAN ++ MPI_PYTHON_SITEARCH='%{python2_sitearch}/mpich' ++ export MPI_PYTHON_SITEARCH ++ _LMFILES_=/usr/share/modulefiles/mpi/mpich-x86_64 ++ export _LMFILES_ ++ LOADEDMODULES=mpi/mpich-x86_64 ++ export LOADEDMODULES ++ PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.11/site-packages/mpich ++ export MPI_PYTHON3_SITEARCH ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich ++ export MPI_FORTRAN_MOD_DIR ++ MPI_HOME=/usr/lib64/mpich ++ export MPI_HOME ++ __MODULES_LMCONFLICT='mpi/mpich-x86_64&mpi' ++ export __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:2 ++ export __MODULES_SHARE_MANPATH ++ MPI_SYSCONFIG=/etc/mpich-x86_64 ++ export MPI_SYSCONFIG ++ MPI_SUFFIX=_mpich ++ export MPI_SUFFIX ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ MPI_PYTHON2_SITEARCH='%{python2_sitearch}/mpich' ++ export MPI_PYTHON2_SITEARCH ++ MPI_LIB=/usr/lib64/mpich/lib ++ export MPI_LIB ++ PATH=/usr/lib64/mpich/bin:/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ MPI_BIN=/usr/lib64/mpich/bin ++ export MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + export 'CFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' + make install DESTDIR=/builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64 # Pre-install commands follow. # Normal commands follow. /usr/bin/mkdir -p /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/include/mpich-x86_64/bout++//{,pvode,bout/sys,bout/invert} /usr/bin/mkdir -p /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/{/usr/lib64/mpich/lib,/usr/lib64/mpich/bin,/usr/share/bout++/idllib} /usr/bin/install -c -m 644 include/*.hxx /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/include/mpich-x86_64/bout++/ /usr/bin/install -c -m 644 include/pvode/*.h /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/include/mpich-x86_64/bout++//pvode/ /usr/bin/install -c -m 644 include/bout/*.hxx /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/include/mpich-x86_64/bout++//bout/ /usr/bin/install -c -m 644 include/bout/sys/*.hxx /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/include/mpich-x86_64/bout++//bout/sys/ /usr/bin/install -c -m 644 include/bout/invert/*.hxx /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/include/mpich-x86_64/bout++//bout/invert/ /usr/bin/install -c lib/libbout++.so.4.4.0 /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/lib64/mpich/lib /usr/bin/install -c lib/libpvode.so.* /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/lib64/mpich/lib /usr/bin/install -c lib/libpvpre.so.* /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/lib64/mpich/lib rm -f /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/lib64/mpich/lib/lib{bout++,pvode,pvpre}.so ln -s libbout++.so.4.4.0 /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/lib64/mpich/lib/libbout++.so ln -s libpvode.so.1.0.0 /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/lib64/mpich/lib/libpvode.so ln -s libpvpre.so.1.0.0 /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/lib64/mpich/lib/libpvpre.so /usr/bin/install -c bin/bout-config /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/lib64/mpich/bin /usr/bin/install -c bin/bout-log-color /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/lib64/mpich/bin /usr/bin/install -c -m 644 tools/idllib/*.pro /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/share/bout++/idllib/ /usr/bin/install -c -m 644 tools/idllib/README /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/share/bout++/idllib/ /usr/bin/install -c -m 644 make.config /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/include/mpich-x86_64/bout++/ for mo in de/LC_MESSAGES/libbout.mo es/LC_MESSAGES/libbout.mo fr/LC_MESSAGES/libbout.mo zh_CN/LC_MESSAGES/libbout.mo zh_TW/LC_MESSAGES/libbout.mo; do /usr/bin/mkdir -p /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/share/locale/`dirname $mo`; /usr/bin/install -c -m 644 locale/$mo /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/share/locale/$mo; done # Post-install commands follow. sed -i "s|^BOUT_INCLUDE_PATH=.*|BOUT_INCLUDE_PATH=/usr/include/mpich-x86_64/bout++|" /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/lib64/mpich/bin/bout-config sed -i "s|^BOUT_LIB_PATH=.*|BOUT_LIB_PATH=/usr/lib64/mpich/lib|" /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/lib64/mpich/bin/bout-config sed -i "s|^BOUT_CONFIG_FILE=.*|BOUT_CONFIG_FILE=/usr/share/bout++/make.config|" /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/lib64/mpich/bin/bout-config sed -i "s|^idlpath=.*|idlpath=/usr/share/bout++/idllib/|" /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/lib64/mpich/bin/bout-config sed -i "s|^pythonpath=.*|pythonpath=/usr/share/bout++/pylib/|" /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/lib64/mpich/bin/bout-config sed -i "s|^BOUT_INCLUDE_PATH=.*|BOUT_INCLUDE_PATH=/usr/include/mpich-x86_64/bout++|" /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/include/mpich-x86_64/bout++//make.config sed -i "s|^BOUT_LIB_PATH=.*|BOUT_LIB_PATH=/usr/lib64/mpich/lib|" /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/include/mpich-x86_64/bout++//make.config sed -i "s|^BOUT_CONFIG_FILE=.*|BOUT_CONFIG_FILE=/usr/include/mpich-x86_64/bout++/make.config|" /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/include/mpich-x86_64/bout++//make.config sed -i '26 i RELEASED = yes' /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/include/mpich-x86_64/bout++//make.config + sed -i '27 i RELEASED = 4.4.2-5.fc39' /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64//usr/include/mpich-x86_64/bout++/make.config + rm -rf /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/share/bout++ + popd ~/build/BUILD/BOUT++-v4.4.2 + mkdir -p /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/share/modulefiles/bout++ + cat + '[' mpich = mpich ']' + . /etc/profile.d/modules.sh ++ '[' -n /bin/sh ']' ++ '[' sh = sh ']' ++ shell=sh ++ '[' -f /usr/share/Modules/init/sh ']' ++ . /usr/share/Modules/init/sh +++ unset _mlshdbg +++ '[' 0 = 1 ']' +++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD' +++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD' +++ unset _mlre _mlIFS +++ '[' -n x ']' +++ _mlIFS=' ' +++ IFS=' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' ++++ eval 'echo ${LD_LIBRARY_PATH+x}' +++++ echo x +++ '[' -n x ']' ++++ eval 'echo ${LD_LIBRARY_PATH}' +++++ echo /usr/lib64/mpich/lib +++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' ' +++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH ++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}' +++++ echo +++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_PRELOAD = LD_PRELOAD ']' +++ '[' LD_PRELOAD = LD_PRELOAD ']' ++++ eval 'echo ${LD_PRELOAD+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_PRELOAD ++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}' +++++ echo +++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' +++ '[' -n '__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']' +++ _mlre='eval __MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 ' ++++ eval '__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\''' 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++++ __MODULES_QUAR_LD_LIBRARY_PATH=/usr/lib64/mpich/lib +++++ LD_LIBRARY_PATH= +++++ LD_PRELOAD= +++++ __MODULES_QUARANTINE_SET=1 +++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++ _mlcode='_module_raw() { eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")"; _mlstatus=$?; return $_mlstatus; }; module() { local _mlredir=0; if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then _mlredir=0; elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then _mlredir=1; fi; fi; case " $@ " in *'\'' --no-redirect '\''*) _mlredir=0 ;; *'\'' --redirect '\''*) _mlredir=1 ;; esac; if [ $_mlredir -eq 0 ]; then _module_raw "$@"; else _module_raw "$@" 2>&1; fi; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; unset __MODULES_AUTOINIT_INPROGRESS; MODULESHOME=/usr/share/Modules; export MODULESHOME; test 0;' +++ _mlret=0 +++ '[' -n x ']' +++ IFS=' ' +++ unset _mlIFS +++ unset _mlre _mlv _mlrv +++ '[' 0 -eq 0 ']' +++ eval '_module_raw() { eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")"; _mlstatus=$?; return $_mlstatus; }; module() { local _mlredir=0; if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then _mlredir=0; elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then _mlredir=1; fi; fi; case " $@ " in *'\'' --no-redirect '\''*) _mlredir=0 ;; *'\'' --redirect '\''*) _mlredir=1 ;; esac; if [ $_mlredir -eq 0 ]; then _module_raw "$@"; else _module_raw "$@" 2>&1; fi; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; unset __MODULES_AUTOINIT_INPROGRESS; MODULESHOME=/usr/share/Modules; export MODULESHOME; test 0;' ++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl ++++ export MODULES_CMD ++++ unset __MODULES_AUTOINIT_INPROGRESS ++++ MODULESHOME=/usr/share/Modules ++++ export MODULESHOME ++++ test 0 +++ '[' /bin/sh '!=' '' ']' +++ export -f _module_raw +++ export -f module ++++ type -t ml +++ '[' function = function ']' +++ export -f ml +++ unset _mlcode _mlret +++ '[' -n '' ']' + module unload mpi/mpich-x86_64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw unload mpi/mpich-x86_64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh unload mpi/mpich-x86_64 + eval 'unset LD_LIBRARY_PATH; unset MPI_COMPILER; MANPATH=/usr/share/man:; export MANPATH; unset MPI_INCLUDE; unset MPI_MAN; unset MPI_PYTHON_SITEARCH; unset _LMFILES_; unset LOADEDMODULES; PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH; unset MPI_PYTHON3_SITEARCH; unset MPI_FORTRAN_MOD_DIR; unset MPI_HOME; unset __MODULES_LMCONFLICT; __MODULES_SHARE_MANPATH=:1; export __MODULES_SHARE_MANPATH; unset MPI_SYSCONFIG; unset MPI_SUFFIX; __MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH; unset MPI_PYTHON2_SITEARCH; unset MPI_LIB; PATH=/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH; unset MPI_BIN; test 0;' ~/build/BUILD/BOUT++-v4.4.2/build_openmpi ~/build/BUILD/BOUT++-v4.4.2 ++ unset LD_LIBRARY_PATH ++ unset MPI_COMPILER ++ MANPATH=/usr/share/man: ++ export MANPATH ++ unset MPI_INCLUDE ++ unset MPI_MAN ++ unset MPI_PYTHON_SITEARCH ++ unset _LMFILES_ ++ unset LOADEDMODULES ++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_FORTRAN_MOD_DIR ++ unset MPI_HOME ++ unset __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:1 ++ export __MODULES_SHARE_MANPATH ++ unset MPI_SYSCONFIG ++ unset MPI_SUFFIX ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ unset MPI_PYTHON2_SITEARCH ++ unset MPI_LIB ++ PATH=/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ unset MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + for mpi in mpich openmpi + pushd build_openmpi + '[' openmpi = mpich ']' + . /etc/profile.d/modules.sh ++ '[' -n /bin/sh ']' ++ '[' sh = sh ']' ++ shell=sh ++ '[' -f /usr/share/Modules/init/sh ']' ++ . /usr/share/Modules/init/sh +++ unset _mlshdbg +++ '[' 0 = 1 ']' +++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD' +++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD' +++ unset _mlre _mlIFS +++ '[' -n x ']' +++ _mlIFS=' ' +++ IFS=' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' ++++ eval 'echo ${LD_LIBRARY_PATH+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH ++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}' +++++ echo +++ _mlre='LD_LIBRARY_PATH='\'''\'' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_PRELOAD = LD_PRELOAD ']' +++ '[' LD_PRELOAD = LD_PRELOAD ']' ++++ eval 'echo ${LD_PRELOAD+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_PRELOAD ++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}' +++++ echo +++ _mlre='LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' +++ '[' -n 'LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']' +++ _mlre='eval LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 ' ++++ eval 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++++ LD_LIBRARY_PATH= +++++ LD_PRELOAD= +++++ __MODULES_QUARANTINE_SET=1 +++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++ _mlcode='_module_raw() { eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")"; _mlstatus=$?; return $_mlstatus; }; module() { local _mlredir=0; if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then _mlredir=0; elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then _mlredir=1; fi; fi; case " $@ " in *'\'' --no-redirect '\''*) _mlredir=0 ;; *'\'' --redirect '\''*) _mlredir=1 ;; esac; if [ $_mlredir -eq 0 ]; then _module_raw "$@"; else _module_raw "$@" 2>&1; fi; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; unset __MODULES_AUTOINIT_INPROGRESS; MODULESHOME=/usr/share/Modules; export MODULESHOME; LOADEDMODULES=; export LOADEDMODULES; test 0;' +++ _mlret=0 +++ '[' -n x ']' +++ IFS=' ' +++ unset _mlIFS +++ unset _mlre _mlv _mlrv +++ '[' 0 -eq 0 ']' +++ eval '_module_raw() { eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")"; _mlstatus=$?; return $_mlstatus; }; module() { local _mlredir=0; if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then _mlredir=0; elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then _mlredir=1; fi; fi; case " $@ " in *'\'' --no-redirect '\''*) _mlredir=0 ;; *'\'' --redirect '\''*) _mlredir=1 ;; esac; if [ $_mlredir -eq 0 ]; then _module_raw "$@"; else _module_raw "$@" 2>&1; fi; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; unset __MODULES_AUTOINIT_INPROGRESS; MODULESHOME=/usr/share/Modules; export MODULESHOME; LOADEDMODULES=; export LOADEDMODULES; test 0;' ++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl ++++ export MODULES_CMD ++++ unset __MODULES_AUTOINIT_INPROGRESS ++++ MODULESHOME=/usr/share/Modules ++++ export MODULESHOME ++++ LOADEDMODULES= ++++ export LOADEDMODULES ++++ test 0 +++ '[' /bin/sh '!=' '' ']' +++ export -f _module_raw +++ export -f module ++++ type -t ml +++ '[' function = function ']' +++ export -f ml +++ unset _mlcode _mlret +++ '[' -n '' ']' + module load mpi/openmpi-x86_64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw load mpi/openmpi-x86_64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh load mpi/openmpi-x86_64 + eval 'MPI_COMPILER=openmpi-x86_64; export MPI_COMPILER; LD_LIBRARY_PATH=/usr/lib64/openmpi/lib; export LD_LIBRARY_PATH; MANPATH=/usr/share/man/openmpi-x86_64:/usr/share/man:; export MANPATH; MPI_INCLUDE=/usr/include/openmpi-x86_64; export MPI_INCLUDE; MPI_MAN=/usr/share/man/openmpi-x86_64; export MPI_MAN; _LMFILES_=/usr/share/modulefiles/mpi/openmpi-x86_64; export _LMFILES_; LOADEDMODULES=mpi/openmpi-x86_64; export LOADEDMODULES; PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH; MPI_PYTHON3_SITEARCH=/usr/lib64/python3.11/site-packages/openmpi; export MPI_PYTHON3_SITEARCH; MPI_HOME=/usr/lib64/openmpi; export MPI_HOME; MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi; export MPI_FORTRAN_MOD_DIR; __MODULES_LMALTNAME=mpi/openmpi-x86_64\&as\|mpi/default\&as\|mpi/latest; export __MODULES_LMALTNAME; __MODULES_LMCONFLICT=mpi/openmpi-x86_64\&mpi; export __MODULES_LMCONFLICT; __MODULES_SHARE_MANPATH=:2; export __MODULES_SHARE_MANPATH; MPI_SUFFIX=_openmpi; export MPI_SUFFIX; MPI_SYSCONFIG=/etc/openmpi-x86_64; export MPI_SYSCONFIG; __MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH; MPI_LIB=/usr/lib64/openmpi/lib; export MPI_LIB; PATH=/usr/lib64/openmpi/bin:/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH; MPI_BIN=/usr/lib64/openmpi/bin; export MPI_BIN; test 0;' ++ MPI_COMPILER=openmpi-x86_64 ++ export MPI_COMPILER ++ LD_LIBRARY_PATH=/usr/lib64/openmpi/lib ++ export LD_LIBRARY_PATH ++ MANPATH=/usr/share/man/openmpi-x86_64:/usr/share/man: ++ export MANPATH ++ MPI_INCLUDE=/usr/include/openmpi-x86_64 ++ export MPI_INCLUDE ++ MPI_MAN=/usr/share/man/openmpi-x86_64 ++ export MPI_MAN ++ _LMFILES_=/usr/share/modulefiles/mpi/openmpi-x86_64 ++ export _LMFILES_ ++ LOADEDMODULES=mpi/openmpi-x86_64 ++ export LOADEDMODULES ++ PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.11/site-packages/openmpi ++ export MPI_PYTHON3_SITEARCH ++ MPI_HOME=/usr/lib64/openmpi ++ export MPI_HOME ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi ++ export MPI_FORTRAN_MOD_DIR ++ __MODULES_LMALTNAME='mpi/openmpi-x86_64&as|mpi/default&as|mpi/latest' ++ export __MODULES_LMALTNAME ++ __MODULES_LMCONFLICT='mpi/openmpi-x86_64&mpi' ++ export __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:2 ++ export __MODULES_SHARE_MANPATH ++ MPI_SUFFIX=_openmpi ++ export MPI_SUFFIX ++ MPI_SYSCONFIG=/etc/openmpi-x86_64 ++ export MPI_SYSCONFIG ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ MPI_LIB=/usr/lib64/openmpi/lib ++ export MPI_LIB ++ PATH=/usr/lib64/openmpi/bin:/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ MPI_BIN=/usr/lib64/openmpi/bin ++ export MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + export OMPI_MCA_rmaps_base_oversubscribe=1 + OMPI_MCA_rmaps_base_oversubscribe=1 + make install DESTDIR=/builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64 # Pre-install commands follow. # Normal commands follow. /usr/bin/mkdir -p /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/include/openmpi-x86_64/bout++//{,pvode,bout/sys,bout/invert} /usr/bin/mkdir -p /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/{/usr/lib64/openmpi/lib,/usr/lib64/openmpi/bin,/usr/share/bout++/idllib} /usr/bin/install -c -m 644 include/*.hxx /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/include/openmpi-x86_64/bout++/ /usr/bin/install -c -m 644 include/pvode/*.h /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/include/openmpi-x86_64/bout++//pvode/ /usr/bin/install -c -m 644 include/bout/*.hxx /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/include/openmpi-x86_64/bout++//bout/ /usr/bin/install -c -m 644 include/bout/sys/*.hxx /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/include/openmpi-x86_64/bout++//bout/sys/ /usr/bin/install -c -m 644 include/bout/invert/*.hxx /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/include/openmpi-x86_64/bout++//bout/invert/ /usr/bin/install -c lib/libbout++.so.4.4.0 /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/lib64/openmpi/lib /usr/bin/install -c lib/libpvode.so.* /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/lib64/openmpi/lib /usr/bin/install -c lib/libpvpre.so.* /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/lib64/openmpi/lib rm -f /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/lib64/openmpi/lib/lib{bout++,pvode,pvpre}.so ln -s libbout++.so.4.4.0 /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/lib64/openmpi/lib/libbout++.so ln -s libpvode.so.1.0.0 /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/lib64/openmpi/lib/libpvode.so ln -s libpvpre.so.1.0.0 /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/lib64/openmpi/lib/libpvpre.so /usr/bin/install -c bin/bout-config /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/lib64/openmpi/bin /usr/bin/install -c bin/bout-log-color /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/lib64/openmpi/bin /usr/bin/install -c -m 644 tools/idllib/*.pro /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/share/bout++/idllib/ /usr/bin/install -c -m 644 tools/idllib/README /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/share/bout++/idllib/ /usr/bin/install -c -m 644 make.config /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/include/openmpi-x86_64/bout++/ for mo in de/LC_MESSAGES/libbout.mo es/LC_MESSAGES/libbout.mo fr/LC_MESSAGES/libbout.mo zh_CN/LC_MESSAGES/libbout.mo zh_TW/LC_MESSAGES/libbout.mo; do /usr/bin/mkdir -p /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/share/locale/`dirname $mo`; /usr/bin/install -c -m 644 locale/$mo /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/share/locale/$mo; done # Post-install commands follow. sed -i "s|^BOUT_INCLUDE_PATH=.*|BOUT_INCLUDE_PATH=/usr/include/openmpi-x86_64/bout++|" /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/lib64/openmpi/bin/bout-config sed -i "s|^BOUT_LIB_PATH=.*|BOUT_LIB_PATH=/usr/lib64/openmpi/lib|" /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/lib64/openmpi/bin/bout-config sed -i "s|^BOUT_CONFIG_FILE=.*|BOUT_CONFIG_FILE=/usr/share/bout++/make.config|" /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/lib64/openmpi/bin/bout-config sed -i "s|^idlpath=.*|idlpath=/usr/share/bout++/idllib/|" /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/lib64/openmpi/bin/bout-config sed -i "s|^pythonpath=.*|pythonpath=/usr/share/bout++/pylib/|" /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/lib64/openmpi/bin/bout-config sed -i "s|^BOUT_INCLUDE_PATH=.*|BOUT_INCLUDE_PATH=/usr/include/openmpi-x86_64/bout++|" /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/include/openmpi-x86_64/bout++//make.config sed -i "s|^BOUT_LIB_PATH=.*|BOUT_LIB_PATH=/usr/lib64/openmpi/lib|" /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/include/openmpi-x86_64/bout++//make.config sed -i "s|^BOUT_CONFIG_FILE=.*|BOUT_CONFIG_FILE=/usr/include/openmpi-x86_64/bout++/make.config|" /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/include/openmpi-x86_64/bout++//make.config sed -i '26 i RELEASED = yes' /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/include/openmpi-x86_64/bout++//make.config + sed -i '27 i RELEASED = 4.4.2-5.fc39' /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64//usr/include/openmpi-x86_64/bout++/make.config + rm -rf /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/share/bout++ + popd ~/build/BUILD/BOUT++-v4.4.2 + mkdir -p /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/share/modulefiles/bout++ + cat + '[' openmpi = mpich ']' + . /etc/profile.d/modules.sh ++ '[' -n /bin/sh ']' ++ '[' sh = sh ']' ++ shell=sh ++ '[' -f /usr/share/Modules/init/sh ']' ++ . /usr/share/Modules/init/sh +++ unset _mlshdbg +++ '[' 0 = 1 ']' +++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD' +++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD' +++ unset _mlre _mlIFS +++ '[' -n x ']' +++ _mlIFS=' ' +++ IFS=' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' ++++ eval 'echo ${LD_LIBRARY_PATH+x}' +++++ echo x +++ '[' -n x ']' ++++ eval 'echo ${LD_LIBRARY_PATH}' +++++ echo /usr/lib64/openmpi/lib +++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' ' +++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH ++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}' +++++ echo +++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_PRELOAD = LD_PRELOAD ']' +++ '[' LD_PRELOAD = LD_PRELOAD ']' ++++ eval 'echo ${LD_PRELOAD+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_PRELOAD ++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}' +++++ echo +++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' +++ '[' -n '__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']' +++ _mlre='eval __MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 ' ++++ eval '__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\''' 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++++ __MODULES_QUAR_LD_LIBRARY_PATH=/usr/lib64/openmpi/lib +++++ LD_LIBRARY_PATH= +++++ LD_PRELOAD= +++++ __MODULES_QUARANTINE_SET=1 +++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++ _mlcode='_module_raw() { eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")"; _mlstatus=$?; return $_mlstatus; }; module() { local _mlredir=0; if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then _mlredir=0; elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then _mlredir=1; fi; fi; case " $@ " in *'\'' --no-redirect '\''*) _mlredir=0 ;; *'\'' --redirect '\''*) _mlredir=1 ;; esac; if [ $_mlredir -eq 0 ]; then _module_raw "$@"; else _module_raw "$@" 2>&1; fi; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; unset __MODULES_AUTOINIT_INPROGRESS; MODULESHOME=/usr/share/Modules; export MODULESHOME; test 0;' +++ _mlret=0 +++ '[' -n x ']' +++ IFS=' ' +++ unset _mlIFS +++ unset _mlre _mlv _mlrv +++ '[' 0 -eq 0 ']' +++ eval '_module_raw() { eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")"; _mlstatus=$?; return $_mlstatus; }; module() { local _mlredir=0; if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then _mlredir=0; elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then _mlredir=1; fi; fi; case " $@ " in *'\'' --no-redirect '\''*) _mlredir=0 ;; *'\'' --redirect '\''*) _mlredir=1 ;; esac; if [ $_mlredir -eq 0 ]; then _module_raw "$@"; else _module_raw "$@" 2>&1; fi; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; unset __MODULES_AUTOINIT_INPROGRESS; MODULESHOME=/usr/share/Modules; export MODULESHOME; test 0;' ++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl ++++ export MODULES_CMD ++++ unset __MODULES_AUTOINIT_INPROGRESS ++++ MODULESHOME=/usr/share/Modules ++++ export MODULESHOME ++++ test 0 +++ '[' /bin/sh '!=' '' ']' +++ export -f _module_raw +++ export -f module ++++ type -t ml +++ '[' function = function ']' +++ export -f ml +++ unset _mlcode _mlret +++ '[' -n '' ']' + module unload mpi/openmpi-x86_64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw unload mpi/openmpi-x86_64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh unload mpi/openmpi-x86_64 + eval 'unset MPI_COMPILER; unset LD_LIBRARY_PATH; MANPATH=/usr/share/man:; export MANPATH; unset MPI_INCLUDE; unset MPI_MAN; unset _LMFILES_; unset LOADEDMODULES; PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH; unset MPI_PYTHON3_SITEARCH; unset MPI_HOME; unset MPI_FORTRAN_MOD_DIR; unset __MODULES_LMALTNAME; unset __MODULES_LMCONFLICT; __MODULES_SHARE_MANPATH=:1; export __MODULES_SHARE_MANPATH; unset MPI_SUFFIX; unset MPI_SYSCONFIG; __MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH; unset MPI_LIB; PATH=/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH; unset MPI_BIN; test 0;' ~/build/BUILD/BOUT++-v4.4.2/tools/pylib ~/build/BUILD/BOUT++-v4.4.2 ++ unset MPI_COMPILER ++ unset LD_LIBRARY_PATH ++ MANPATH=/usr/share/man: ++ export MANPATH ++ unset MPI_INCLUDE ++ unset MPI_MAN ++ unset _LMFILES_ ++ unset LOADEDMODULES ++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_HOME ++ unset MPI_FORTRAN_MOD_DIR ++ unset __MODULES_LMALTNAME ++ unset __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:1 ++ export __MODULES_SHARE_MANPATH ++ unset MPI_SUFFIX ++ unset MPI_SYSCONFIG ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ unset MPI_LIB ++ PATH=/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ unset MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + pushd tools/pylib + for d in bout_runners zoidberg + mkdir -p /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64//usr/lib/python3.11/site-packages/bout_runners + cp bout_runners/__init__.py bout_runners/bout_runners.py /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64//usr/lib/python3.11/site-packages/bout_runners/ + for d in bout_runners zoidberg + mkdir -p /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64//usr/lib/python3.11/site-packages/zoidberg + cp zoidberg/__init__.py zoidberg/boundary.py zoidberg/field.py zoidberg/fieldtracer.py zoidberg/grid.py zoidberg/plot.py zoidberg/poloidal_grid.py zoidberg/progress.py zoidberg/rzline.py zoidberg/test_field.py zoidberg/test_fieldtracer.py zoidberg/test_grid.py zoidberg/test_poloidal_grid.py zoidberg/test_rzline.py zoidberg/test_zoidberg.py zoidberg/zoidberg.py /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64//usr/lib/python3.11/site-packages/zoidberg/ + popd ~/build/BUILD/BOUT++-v4.4.2 ++ ls build_mpich/manual build_openmpi/manual -d ++ head -n1 + mandir=build_mpich/manual + mkdir -p /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64//usr/share/doc/bout++/ + rm -rf build_mpich/manual/html/.buildinfo + rm -rf build_mpich/manual/html/.doctrees + rm -rf build_mpich/manual/html/_sources + cp -r build_mpich/manual/html /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64//usr/share/doc/bout++/ + for mpi in mpich openmpi + mkdir -p /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64//usr/lib64/python3.11/site-packages/mpich/ + install build_mpich/tools/pylib/boutcore.cpython-311-x86_64-linux-gnu.so /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64//usr/lib64/python3.11/site-packages/mpich/ + for mpi in mpich openmpi + mkdir -p /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64//usr/lib64/python3.11/site-packages/openmpi/ + install build_openmpi/tools/pylib/boutcore.cpython-311-x86_64-linux-gnu.so /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64//usr/lib64/python3.11/site-packages/openmpi/ + /usr/lib/rpm/find-lang.sh /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64 libbout + /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 4.4.2-5.fc39 --unique-debug-suffix -4.4.2-5.fc39.x86_64 --unique-debug-src-base bout++-4.4.2-5.fc39.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/BOUT++-v4.4.2 extracting debug info from /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/lib64/mpich/lib/libpvode.so.1.0.0 extracting debug info from /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/lib64/mpich/lib/libbout++.so.4.4.0 extracting debug info from /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/lib64/mpich/lib/libpvpre.so.1.0.0 extracting debug info from /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/lib64/openmpi/lib/libbout++.so.4.4.0 extracting debug info from /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/lib64/openmpi/lib/libpvode.so.1.0.0 extracting debug info from /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/lib64/openmpi/lib/libpvpre.so.1.0.0 extracting debug info from /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/lib64/python3.11/site-packages/mpich/boutcore.cpython-311-x86_64-linux-gnu.so extracting debug info from /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/lib64/python3.11/site-packages/openmpi/boutcore.cpython-311-x86_64-linux-gnu.so original debug info size: 191844kB, size after compression: 154176kB /usr/bin/sepdebugcrcfix: Updated 8 CRC32s, 0 CRC32s did match. 19592 blocks + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs *** WARNING: ./usr/lib/python3.11/site-packages/bout_runners/bout_runners.py is executable but has no shebang, removing executable bit mangling shebang in /usr/lib64/openmpi/bin/bout-config from /bin/sh to #!/usr/bin/sh mangling shebang in /usr/lib64/openmpi/bin/bout-log-color from /bin/sh to #!/usr/bin/sh mangling shebang in /usr/lib64/mpich/bin/bout-config from /bin/sh to #!/usr/bin/sh mangling shebang in /usr/lib64/mpich/bin/bout-log-color from /bin/sh to #!/usr/bin/sh + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2 Bytecompiling .py files below /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/lib/debug/usr/lib64/python3.11 using python3.11 Bytecompiling .py files below /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/lib/python3.11 using python3.11 Bytecompiling .py files below /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/lib64/python3.11 using python3.11 + /usr/lib/rpm/redhat/brp-python-hardlink Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.aCvRxE + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd BOUT++-v4.4.2 + fail=1 + for mpi in mpich openmpi + '[' mpich = mpich ']' + . /etc/profile.d/modules.sh ++ '[' -n /bin/sh ']' ++ '[' sh = sh ']' ++ shell=sh ++ '[' -f /usr/share/Modules/init/sh ']' ++ . /usr/share/Modules/init/sh +++ unset _mlshdbg +++ '[' 0 = 1 ']' +++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD' +++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD' +++ unset _mlre _mlIFS +++ '[' -n x ']' +++ _mlIFS=' ' +++ IFS=' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' ++++ eval 'echo ${LD_LIBRARY_PATH+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH ++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}' +++++ echo +++ _mlre='LD_LIBRARY_PATH='\'''\'' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_PRELOAD = LD_PRELOAD ']' +++ '[' LD_PRELOAD = LD_PRELOAD ']' ++++ eval 'echo ${LD_PRELOAD+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_PRELOAD ++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}' +++++ echo +++ _mlre='LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' +++ '[' -n 'LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']' +++ _mlre='eval LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 ' ++++ eval 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++++ LD_LIBRARY_PATH= +++++ LD_PRELOAD= +++++ __MODULES_QUARANTINE_SET=1 +++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++ _mlcode='_module_raw() { eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")"; _mlstatus=$?; return $_mlstatus; }; module() { local _mlredir=0; if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then _mlredir=0; elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then _mlredir=1; fi; fi; case " $@ " in *'\'' --no-redirect '\''*) _mlredir=0 ;; *'\'' --redirect '\''*) _mlredir=1 ;; esac; if [ $_mlredir -eq 0 ]; then _module_raw "$@"; else _module_raw "$@" 2>&1; fi; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; unset __MODULES_AUTOINIT_INPROGRESS; MODULESHOME=/usr/share/Modules; export MODULESHOME; test 0;' +++ _mlret=0 +++ '[' -n x ']' +++ IFS=' ' +++ unset _mlIFS +++ unset _mlre _mlv _mlrv +++ '[' 0 -eq 0 ']' +++ eval '_module_raw() { eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")"; _mlstatus=$?; return $_mlstatus; }; module() { local _mlredir=0; if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then _mlredir=0; elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then _mlredir=1; fi; fi; case " $@ " in *'\'' --no-redirect '\''*) _mlredir=0 ;; *'\'' --redirect '\''*) _mlredir=1 ;; esac; if [ $_mlredir -eq 0 ]; then _module_raw "$@"; else _module_raw "$@" 2>&1; fi; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; unset __MODULES_AUTOINIT_INPROGRESS; MODULESHOME=/usr/share/Modules; export MODULESHOME; test 0;' ++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl ++++ export MODULES_CMD ++++ unset __MODULES_AUTOINIT_INPROGRESS ++++ MODULESHOME=/usr/share/Modules ++++ export MODULESHOME ++++ test 0 +++ '[' /bin/sh '!=' '' ']' +++ export -f _module_raw +++ export -f module ++++ type -t ml +++ '[' function = function ']' +++ export -f ml +++ unset _mlcode _mlret +++ '[' -n '' ']' + module load mpi/mpich-x86_64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw load mpi/mpich-x86_64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh load mpi/mpich-x86_64 + eval 'LD_LIBRARY_PATH=/usr/lib64/mpich/lib; export LD_LIBRARY_PATH; MPI_COMPILER=mpich-x86_64; export MPI_COMPILER; MANPATH=/usr/share/man/mpich-x86_64:/usr/share/man:; export MANPATH; MPI_INCLUDE=/usr/include/mpich-x86_64; export MPI_INCLUDE; MPI_MAN=/usr/share/man/mpich-x86_64; export MPI_MAN; MPI_PYTHON_SITEARCH=%\{python2_sitearch\}/mpich; export MPI_PYTHON_SITEARCH; _LMFILES_=/usr/share/modulefiles/mpi/mpich-x86_64; export _LMFILES_; LOADEDMODULES=mpi/mpich-x86_64; export LOADEDMODULES; PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH; MPI_PYTHON3_SITEARCH=/usr/lib64/python3.11/site-packages/mpich; export MPI_PYTHON3_SITEARCH; MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich; export MPI_FORTRAN_MOD_DIR; MPI_HOME=/usr/lib64/mpich; export MPI_HOME; __MODULES_LMCONFLICT=mpi/mpich-x86_64\&mpi; export __MODULES_LMCONFLICT; __MODULES_SHARE_MANPATH=:2; export __MODULES_SHARE_MANPATH; MPI_SYSCONFIG=/etc/mpich-x86_64; export MPI_SYSCONFIG; MPI_SUFFIX=_mpich; export MPI_SUFFIX; __MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH; MPI_PYTHON2_SITEARCH=%\{python2_sitearch\}/mpich; export MPI_PYTHON2_SITEARCH; MPI_LIB=/usr/lib64/mpich/lib; export MPI_LIB; PATH=/usr/lib64/mpich/bin:/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH; MPI_BIN=/usr/lib64/mpich/bin; export MPI_BIN; test 0;' ~/build/BUILD/BOUT++-v4.4.2/build_mpich ~/build/BUILD/BOUT++-v4.4.2 ++ LD_LIBRARY_PATH=/usr/lib64/mpich/lib ++ export LD_LIBRARY_PATH ++ MPI_COMPILER=mpich-x86_64 ++ export MPI_COMPILER ++ MANPATH=/usr/share/man/mpich-x86_64:/usr/share/man: ++ export MANPATH ++ MPI_INCLUDE=/usr/include/mpich-x86_64 ++ export MPI_INCLUDE ++ MPI_MAN=/usr/share/man/mpich-x86_64 ++ export MPI_MAN ++ MPI_PYTHON_SITEARCH='%{python2_sitearch}/mpich' ++ export MPI_PYTHON_SITEARCH ++ _LMFILES_=/usr/share/modulefiles/mpi/mpich-x86_64 ++ export _LMFILES_ ++ LOADEDMODULES=mpi/mpich-x86_64 ++ export LOADEDMODULES ++ PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.11/site-packages/mpich ++ export MPI_PYTHON3_SITEARCH ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich ++ export MPI_FORTRAN_MOD_DIR ++ MPI_HOME=/usr/lib64/mpich ++ export MPI_HOME ++ __MODULES_LMCONFLICT='mpi/mpich-x86_64&mpi' ++ export __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:2 ++ export __MODULES_SHARE_MANPATH ++ MPI_SYSCONFIG=/etc/mpich-x86_64 ++ export MPI_SYSCONFIG ++ MPI_SUFFIX=_mpich ++ export MPI_SUFFIX ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ MPI_PYTHON2_SITEARCH='%{python2_sitearch}/mpich' ++ export MPI_PYTHON2_SITEARCH ++ MPI_LIB=/usr/lib64/mpich/lib ++ export MPI_LIB ++ PATH=/usr/lib64/mpich/bin:/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ MPI_BIN=/usr/lib64/mpich/bin ++ export MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + export 'CFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' + pushd build_mpich + export OMPI_MCA_rmaps_base_oversubscribe=yes + OMPI_MCA_rmaps_base_oversubscribe=yes + export HDF5_USE_FILE_LOCKING=FALSE + HDF5_USE_FILE_LOCKING=FALSE + export BOUT_TEST_TIMEOUT=15m + BOUT_TEST_TIMEOUT=15m + sed 's/ 3s / 30s /' tests/integrated/test-coordinates-initialization/runtest #!/bin/bash make || exit test -z $MPIRUN && MPIRUN='mpirun -np' # Kill the test after 3 seconds, if it hasn't already exited OMP_NUM_THREADS=1 $MPIRUN 3 timeout 30s ./test-coordinates-initialization e=$? if test $e -ne 0 then echo "The test failed. That can be caused by a timeout." echo "If this test is run on high load, it may fail occasionally." echo "The load is:" uptime fi exit $e + make -j2 build-check make --no-print-directory -C tests/integrated make --no-print-directory -C tests/MMS Compiling wave.cxx Compiling test_yupdown.cxx In file included from ../../..//include/field.hxx:41, from ../../..//include/field3d.hxx:30, from ../../..//include/difops.hxx:39, from ../../..//include/bout.hxx:41, from ../../..//include/bout/physicsmodel.hxx:40, from wave.cxx:1: ../../..//include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../..//include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../..//include/dataformat.hxx:40, from ../../..//include/datafile.hxx:20, from ../../..//include/bout.hxx:40: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_yupdown.cxx:1: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/bout.hxx:40: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking test_yupdown Compiling testVec.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from ../../../include/bout/physicsmodel.hxx:40, from testVec.cxx:2: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/bout.hxx:40: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking wave Compiling wave.cxx Linking testVec Compiling test-twistshift.cxx In file included from ../../..//include/field.hxx:41, from ../../..//include/field3d.hxx:30, from ../../..//include/difops.hxx:39, from ../../..//include/bout.hxx:41, from ../../..//include/bout/physicsmodel.hxx:40, from wave.cxx:1: ../../..//include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../..//include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../..//include/dataformat.hxx:40, from ../../..//include/datafile.hxx:20, from ../../..//include/bout.hxx:40: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test-twistshift.cxx:1: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/bout.hxx:40: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking wave Linking test-twistshift Compiling fci_mms.cxx Compiling test-twistshift.cxx In file included from ../../../../include/field.hxx:41, from ../../../../include/field3d.hxx:30, from ../../../../include/difops.hxx:39, from ../../../../include/bout.hxx:41, from fci_mms.cxx:1: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../../include/dataformat.hxx:40, from ../../../../include/datafile.hxx:20, from ../../../../include/bout.hxx:40: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test-twistshift.cxx:1: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/bout.hxx:40: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking fci_mms Linking test-twistshift Compiling fuu.cxx Compiling diffusion.cxx In file included from ../../../../include/field.hxx:41, from ../../../../include/field3d.hxx:30, from ../../../../include/difops.hxx:39, from ../../../../include/bout.hxx:41, from fuu.hxx:4, from fuu.cxx:1: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../../include/dataformat.hxx:40, from ../../../../include/datafile.hxx:20, from ../../../../include/bout.hxx:40: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../..//include/field.hxx:41, from ../../..//include/field3d.hxx:30, from ../../..//include/difops.hxx:39, from ../../..//include/bout.hxx:41, from diffusion.cxx:1: ../../..//include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../..//include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../..//include/dataformat.hxx:40, from ../../..//include/datafile.hxx:20, from ../../..//include/bout.hxx:40: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Adding fuu.o to /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-subdir/fuu.a Compiling bar.cxx In file included from ../../../../include/field.hxx:41, from ../../../../include/field3d.hxx:30, from ../../../../include/difops.hxx:39, from ../../../../include/bout.hxx:41, from bar.cxx:1: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../../include/dataformat.hxx:40, from ../../../../include/datafile.hxx:20, from ../../../../include/bout.hxx:40: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Adding bar.o to /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-subdir/bar.a Compiling subdirs.cxx Linking cyto In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from ../../../include/bout/physicsmodel.hxx:40, from subdirs.cxx:1: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/bout.hxx:40: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling test_stopCheck.cxx Linking subdirs In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_stopCheck.cxx:6: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/bout.hxx:40: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling test_stopCheck.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_stopCheck.cxx:6: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/bout.hxx:40: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking test_stopCheck Compiling test_solver.cxx Linking test_stopCheck In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from ../../../include/bout/physicsmodel.hxx:40, from test_solver.cxx:2: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/bout.hxx:40: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling test_snb.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/invert_parderiv.hxx:34, from ../../../include/bout/snb.hxx:1, from test_snb.cxx:1: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../include/field.hxx:34: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking test_solver Linking test_snb Compiling test_smooth.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_smooth.cxx:6: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/bout.hxx:40: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling test_restarting.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from ../../../include/bout/physicsmodel.hxx:40, from test_restarting.cxx:1: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/bout.hxx:40: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking test_smooth Compiling test-restart-io.cxx Linking test_restarting Compiling test-restart-io.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from ../../../include/bout/physicsmodel.hxx:40, from test-restart-io.cxx:1: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/bout.hxx:40: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from ../../../include/bout/physicsmodel.hxx:40, from test-restart-io.cxx:1: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/bout.hxx:40: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking test-restart-io Compiling test_region_iterator.cxx Linking test-restart-io Compiling test_naulin_laplace.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_region_iterator.cxx:1: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/bout.hxx:40: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_naulin_laplace.cxx:26: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/bout.hxx:40: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking test_region_iterator Compiling test_multigrid_laplace.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_multigrid_laplace.cxx:26: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/bout.hxx:40: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking test_naulin_laplace Compiling test-laplacexy.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test-laplacexy.cxx:26: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/bout.hxx:40: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking test_multigrid_laplace Compiling test_laplace.cxx Linking test-laplacexy-short In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_laplace.cxx:6: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/bout.hxx:40: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling test_io_hdf5.cxx test_laplace.cxx: In function 'int main(int, char**)': test_laplace.cxx:23:33: warning: 'const Field3D invert_laplace(const Field3D&, int, const Field2D*, const Field2D*, const Field2D*)' is deprecated [-Wdeprecated-declarations] 23 | Field3D flag0 = invert_laplace(input, 0); | ~~~~~~~~~~~~~~^~~~~~~~~~ In file included from ../../../include/bout_types.hxx:25, from ../../../include/datafile.hxx:17: ../../../include/invert_laplace.hxx:284:26: note: declared here 284 | DEPRECATED(const Field3D invert_laplace(const Field3D &b, int flags, const Field2D *a = nullptr, | ^~~~~~~~~~~~~~ ../../../include/bout/deprecated.hxx:18:55: note: in definition of macro 'DEPRECATED' 18 | #define DEPRECATED(func) __attribute__ ((deprecated)) func | ^~~~ test_laplace.cxx:24:33: warning: 'const Field3D invert_laplace(const Field3D&, int, const Field2D*, const Field2D*, const Field2D*)' is deprecated [-Wdeprecated-declarations] 24 | Field3D flag3 = invert_laplace(input, 3); | ~~~~~~~~~~~~~~^~~~~~~~~~ ../../../include/invert_laplace.hxx:284:26: note: declared here 284 | DEPRECATED(const Field3D invert_laplace(const Field3D &b, int flags, const Field2D *a = nullptr, | ^~~~~~~~~~~~~~ ../../../include/bout/deprecated.hxx:18:55: note: in definition of macro 'DEPRECATED' 18 | #define DEPRECATED(func) __attribute__ ((deprecated)) func | ^~~~ test_laplace.cxx:27:34: warning: 'const Field3D invert_laplace(const Field3D&, int, const Field2D*, const Field2D*, const Field2D*)' is deprecated [-Wdeprecated-declarations] 27 | Field3D flag0a = invert_laplace(input, 0, &a); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ ../../../include/invert_laplace.hxx:284:26: note: declared here 284 | DEPRECATED(const Field3D invert_laplace(const Field3D &b, int flags, const Field2D *a = nullptr, | ^~~~~~~~~~~~~~ ../../../include/bout/deprecated.hxx:18:55: note: in definition of macro 'DEPRECATED' 18 | #define DEPRECATED(func) __attribute__ ((deprecated)) func | ^~~~ test_laplace.cxx:28:34: warning: 'const Field3D invert_laplace(const Field3D&, int, const Field2D*, const Field2D*, const Field2D*)' is deprecated [-Wdeprecated-declarations] 28 | Field3D flag3a = invert_laplace(input, 3, &a); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ ../../../include/invert_laplace.hxx:284:26: note: declared here 284 | DEPRECATED(const Field3D invert_laplace(const Field3D &b, int flags, const Field2D *a = nullptr, | ^~~~~~~~~~~~~~ ../../../include/bout/deprecated.hxx:18:55: note: in definition of macro 'DEPRECATED' 18 | #define DEPRECATED(func) __attribute__ ((deprecated)) func | ^~~~ test_laplace.cxx:31:35: warning: 'const Field3D invert_laplace(const Field3D&, int, const Field2D*, const Field2D*, const Field2D*)' is deprecated [-Wdeprecated-declarations] 31 | Field3D flag0ac = invert_laplace(input, 0, &a, &c); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ ../../../include/invert_laplace.hxx:284:26: note: declared here 284 | DEPRECATED(const Field3D invert_laplace(const Field3D &b, int flags, const Field2D *a = nullptr, | ^~~~~~~~~~~~~~ ../../../include/bout/deprecated.hxx:18:55: note: in definition of macro 'DEPRECATED' 18 | #define DEPRECATED(func) __attribute__ ((deprecated)) func | ^~~~ test_laplace.cxx:32:35: warning: 'const Field3D invert_laplace(const Field3D&, int, const Field2D*, const Field2D*, const Field2D*)' is deprecated [-Wdeprecated-declarations] 32 | Field3D flag3ac = invert_laplace(input, 3, &a, &c); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ ../../../include/invert_laplace.hxx:284:26: note: declared here 284 | DEPRECATED(const Field3D invert_laplace(const Field3D &b, int flags, const Field2D *a = nullptr, | ^~~~~~~~~~~~~~ ../../../include/bout/deprecated.hxx:18:55: note: in definition of macro 'DEPRECATED' 18 | #define DEPRECATED(func) __attribute__ ((deprecated)) func | ^~~~ test_laplace.cxx:35:35: warning: 'const Field3D invert_laplace(const Field3D&, int, const Field2D*, const Field2D*, const Field2D*)' is deprecated [-Wdeprecated-declarations] 35 | Field3D flag0ad = invert_laplace(input, 0, &a, nullptr, &d); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../include/invert_laplace.hxx:284:26: note: declared here 284 | DEPRECATED(const Field3D invert_laplace(const Field3D &b, int flags, const Field2D *a = nullptr, | ^~~~~~~~~~~~~~ ../../../include/bout/deprecated.hxx:18:55: note: in definition of macro 'DEPRECATED' 18 | #define DEPRECATED(func) __attribute__ ((deprecated)) func | ^~~~ test_laplace.cxx:36:35: warning: 'const Field3D invert_laplace(const Field3D&, int, const Field2D*, const Field2D*, const Field2D*)' is deprecated [-Wdeprecated-declarations] 36 | Field3D flag3ad = invert_laplace(input, 3, &a, nullptr, &d); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../include/invert_laplace.hxx:284:26: note: declared here 284 | DEPRECATED(const Field3D invert_laplace(const Field3D &b, int flags, const Field2D *a = nullptr, | ^~~~~~~~~~~~~~ ../../../include/bout/deprecated.hxx:18:55: note: in definition of macro 'DEPRECATED' 18 | #define DEPRECATED(func) __attribute__ ((deprecated)) func | ^~~~ test_laplace.cxx:45:16: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations] 45 | lap->setFlags(4096); | ~~~~~~~~~~~~~^~~~~~ In file included from test_laplace.cxx:7: ../../../include/invert_laplace.hxx:189:16: note: declared here 189 | virtual void setFlags(int f); | ^~~~~~~~ test_laplace.cxx:47:16: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations] 47 | lap->setFlags(8192); | ~~~~~~~~~~~~~^~~~~~ ../../../include/invert_laplace.hxx:189:16: note: declared here 189 | virtual void setFlags(int f); | ^~~~~~~~ test_laplace.cxx:52:16: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations] 52 | lap->setFlags(4096); | ~~~~~~~~~~~~~^~~~~~ ../../../include/invert_laplace.hxx:189:16: note: declared here 189 | virtual void setFlags(int f); | ^~~~~~~~ test_laplace.cxx:54:16: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations] 54 | lap->setFlags(8192); | ~~~~~~~~~~~~~^~~~~~ ../../../include/invert_laplace.hxx:189:16: note: declared here 189 | virtual void setFlags(int f); | ^~~~~~~~ test_laplace.cxx:59:16: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations] 59 | lap->setFlags(4096); | ~~~~~~~~~~~~~^~~~~~ ../../../include/invert_laplace.hxx:189:16: note: declared here 189 | virtual void setFlags(int f); | ^~~~~~~~ test_laplace.cxx:61:16: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations] 61 | lap->setFlags(8192); | ~~~~~~~~~~~~~^~~~~~ ../../../include/invert_laplace.hxx:189:16: note: declared here 189 | virtual void setFlags(int f); | ^~~~~~~~ test_laplace.cxx:67:16: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations] 67 | lap->setFlags(4096); | ~~~~~~~~~~~~~^~~~~~ ../../../include/invert_laplace.hxx:189:16: note: declared here 189 | virtual void setFlags(int f); | ^~~~~~~~ test_laplace.cxx:69:16: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations] 69 | lap->setFlags(8192); | ~~~~~~~~~~~~~^~~~~~ ../../../include/invert_laplace.hxx:189:16: note: declared here 189 | virtual void setFlags(int f); | ^~~~~~~~ In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_io_hdf5.cxx:10: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/bout.hxx:40: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking test_laplace Compiling test_io.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_io.cxx:10: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/bout.hxx:40: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking test_io_hdf5 Compiling test_invpar.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_invpar.cxx:6: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/bout.hxx:40: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking test_io Compiling invertable_operator.cxx In file included from ../../../include/field.hxx:41, from ../../../include/fieldperp.hxx:31, from ../../../include/invert_laplace.hxx:41, from invertable_operator.cxx:1: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../include/field.hxx:34: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking test_invpar Compiling test_interpolate.cxx Linking invertable_operator In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_interpolate.cxx:13: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/bout.hxx:40: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling 2fluid.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from 2fluid.cxx:6: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/bout.hxx:40: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking test_interpolate Compiling test_gyro.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_gyro.cxx:6: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/bout.hxx:40: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking 2fluid Linking test_gyro Compiling test_griddata.cxx Compiling test_griddata.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_griddata.cxx:1: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/bout.hxx:40: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_griddata.cxx:1: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/bout.hxx:40: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking test_griddata Linking test_griddata Compiling test_fieldfactory.cxx Compiling 2fluid.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_fieldfactory.cxx:8: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/bout.hxx:40: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from 2fluid.cxx:6: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/bout.hxx:40: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking test_fieldfactory Compiling test_delp2.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from ../../../include/bout/physicsmodel.hxx:40, from test_delp2.cxx:1: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/bout.hxx:40: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking 2fluid Linking test_delp2 Compiling test_cyclic.cxx Compiling test-coordinates-initialization.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_cyclic.cxx:6: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/bout.hxx:40: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test-coordinates-initialization.cxx:5: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/bout.hxx:40: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking test-coordinates-initialization Compiling command-args.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from command-args.cxx:2: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/bout.hxx:40: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking command-args Linking test_cyclic Compiling test-bout-override-default-option.cxx In file included from ../../../include/utils.hxx:38, from ../../../include/options.hxx:45, from test-bout-override-default-option.cxx:1: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/stdexcept:38, from /usr/include/c++/13/system_error:43, from /usr/include/c++/13/bits/ios_base.h:46, from /usr/include/c++/13/streambuf:43, from ../../../include/multiostream.hxx:4, from ../../../include/output.hxx:32, from ../../../include/options.hxx:44: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling test_beuler.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from ../../../include/bout/physicsmodel.hxx:40, from test_beuler.cxx:3: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/sstream:40, from /usr/include/c++/13/complex:45, from /usr/include/mpich-x86_64/petsc/petscsystypes.h:315, from /usr/include/mpich-x86_64/petsc/petscsys.h:47, from /usr/include/mpich-x86_64/petsc/petscbag.h:4, from /usr/include/mpich-x86_64/petsc/petsc.h:5, from ../../../include/bout/petsclib.hxx:52, from test_beuler.cxx:2: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking test-bout-override-default-option Compiling test_extras.cxx Linking test_beuler In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from test_extras.hxx:12, from test_extras.cxx:2: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from test_extras.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling sys/test_variant.cxx In file included from ../../include/utils.hxx:38, from ../../include/bout/sys/variant.hxx:26, from sys/test_variant.cxx:3: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from sys/test_variant.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling sys/test_utils.cxx In file included from ../../include/utils.hxx:38, from sys/test_utils.cxx:2: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from sys/test_utils.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling sys/test_type_name.cxx In file included from ../../include/field.hxx:41, from ../../include/field2d.hxx:34, from sys/test_type_name.cxx:3: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from sys/test_type_name.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling sys/test_timer.cxx In file included from ../../include/bout/sys/timer.hxx:11, from sys/test_timer.cxx:4: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from sys/test_timer.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling sys/test_range.cxx Compiling sys/test_output.cxx Compiling sys/test_optionsreader.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ./test_extras.hxx:12, from sys/test_optionsreader.cxx:2: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from sys/test_optionsreader.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling sys/test_options_netcdf.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from sys/test_options_netcdf.cxx:7: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from sys/test_options_netcdf.cxx:5: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling sys/test_options_fields.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from sys/test_options_fields.cxx:6: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from sys/test_options_fields.cxx:4: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling sys/test_options.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ./test_extras.hxx:12, from sys/test_options.cxx:2: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from sys/test_options.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling sys/test_msg_stack.cxx In file included from sys/test_msg_stack.cxx:5: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from sys/test_msg_stack.cxx:4: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:390: sys/test_msg_stack.cxx: In member function 'virtual void MsgStackTest_SetPointTest_Test::TestBody()': sys/test_msg_stack.cxx:77:33: warning: 'int MsgStack::setPoint()' is deprecated: Please use `MsgStack::push` with an empty message instead [-Wdeprecated-declarations] 77 | EXPECT_EQ(msg_stack.setPoint(), i); | ~~~~~~~~~~~~~~~~~~^~ ../../include/msg_stack.hxx:76:7: note: declared here 76 | int setPoint(); ///< get a message point | ^~~~~~~~ Compiling sys/test_expressionparser.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ./test_extras.hxx:12, from sys/test_expressionparser.cxx:6: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from sys/test_expressionparser.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling sys/test_boutexception.cxx Compiling src/test_bout++.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ./test_extras.hxx:12, from sys/test_boutexception.cxx:3: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from sys/test_boutexception.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/field.hxx:41, from ../../include/field3d.hxx:30, from ../../include/difops.hxx:39, from ../../include/bout.hxx:41, from src/test_bout++.cxx:3: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from src/test_bout++.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling solver/test_solverfactory.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ./test_extras.hxx:12, from solver/test_solverfactory.cxx:4: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from solver/test_solverfactory.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling solver/test_solver.cxx In file included from ../../include/field.hxx:41, from ../../include/field2d.hxx:34, from solver/test_solver.cxx:4: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from solver/test_solver.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling solver/test_fakesolver.cxx In file included from ../../include/utils.hxx:38, from ../../include/options.hxx:45, from ../../include/bout/solver.hxx:42, from solver/test_fakesolver.hxx:6, from solver/test_fakesolver.cxx:1: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from solver/test_fakesolver.hxx:4: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling mesh/test_paralleltransform.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ./test_extras.hxx:12, from mesh/test_paralleltransform.cxx:3: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from mesh/test_paralleltransform.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling mesh/test_mesh.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from mesh/test_mesh.cxx:4: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from mesh/test_mesh.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling mesh/test_interpolation.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from mesh/test_interpolation.cxx:3: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from mesh/test_interpolation.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling mesh/test_coordinates.cxx In file included from ../../include/field.hxx:41, from ../../include/field3d.hxx:30, from ../../include/bout/paralleltransform.hxx:10, from ../../include/bout/coordinates.hxx:36, from mesh/test_coordinates.cxx:3: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from mesh/test_coordinates.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling mesh/test_boutmesh.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ../../include/../src/mesh/impls/bout/boutmesh.hxx:7, from mesh/test_boutmesh.cxx:3: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from mesh/test_boutmesh.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling mesh/test_boundary_factory.cxx In file included from ../../include/field.hxx:41, from ../../include/field2d.hxx:34, from ../../include/boundary_op.hxx:9, from ../../include/boundary_factory.hxx:7, from mesh/test_boundary_factory.cxx:3: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from mesh/test_boundary_factory.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling mesh/parallel/test_shiftedmetric.cxx In file included from ../../include/bout/bout_enum_class.hxx:27, from ../../include/fft.hxx:33, from mesh/parallel/test_shiftedmetric.cxx:3: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from mesh/parallel/test_shiftedmetric.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/list:65, from ../../include/utils.hxx:42, from ../../include/field.hxx:44: In member function 'std::__cxx11::_List_base, std::allocator >, std::allocator, std::allocator > > >::_M_get_size() const', inlined from 'std::__cxx11::list, std::allocator >, std::allocator, std::allocator > > >::_M_node_count() const' at /usr/include/c++/13/bits/stl_list.h:728:33, inlined from 'std::__cxx11::list, std::allocator >, std::allocator, std::allocator > > >::size() const' at /usr/include/c++/13/bits/stl_list.h:1150:29, inlined from 'BoundaryFactoryTest_CreateTestBoundaryPositionalArguments_Test::TestBody()' at mesh/test_boundary_factory.cxx:81:3: /usr/include/c++/13/bits/stl_list.h:480:59: warning: potential null pointer dereference [-Wnull-dereference] 480 | size_t _M_get_size() const { return _M_impl._M_node._M_size; } | ^~~~~~~ In member function 'std::__cxx11::list, std::allocator >, std::allocator, std::allocator > > >::empty() const', inlined from 'BoundaryFactoryTest_CreateTestBoundaryKeywords_Test::TestBody()' at mesh/test_boundary_factory.cxx:93:3: /usr/include/c++/13/bits/stl_list.h:1144:38: warning: potential null pointer dereference [-Wnull-dereference] 1144 | { return this->_M_impl._M_node._M_next == &this->_M_impl._M_node; } | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ Compiling mesh/data/test_gridfromoptions.cxx In file included from ../../include/utils.hxx:38, from ../../include/options.hxx:45, from mesh/data/test_gridfromoptions.cxx:3: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from mesh/data/test_gridfromoptions.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling invert/test_fft.cxx In file included from ../../include/bout/bout_enum_class.hxx:27, from ../../include/fft.hxx:33, from invert/test_fft.cxx:4: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from invert/test_fft.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling include/test_mask.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ../../include/mask.hxx:27, from include/test_mask.cxx:3: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from include/test_mask.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling include/test_interpolation_factory.cxx In file included from ../../include/field.hxx:41, from ../../include/field3d.hxx:30, from ../../include/interpolation.hxx:31, from include/test_interpolation_factory.cxx:3: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from include/test_interpolation_factory.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling include/test_derivs.cxx In file included from ../../include/bout/bout_enum_class.hxx:27, from ../../include/fft.hxx:33, from include/test_derivs.cxx:4: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from include/test_derivs.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling include/test_cyclic_reduction.cxx In file included from ../../include/utils.hxx:38, from ../../include/cyclic_reduction.hxx:46, from include/test_cyclic_reduction.cxx:4: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from include/test_cyclic_reduction.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling include/bout/test_traits.cxx In file included from ../../include/field.hxx:41, from include/bout/test_traits.cxx:3: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from include/bout/test_traits.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling include/bout/test_template_combinations.cxx Compiling include/bout/test_region.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from include/bout/test_region.cxx:4: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from include/bout/test_region.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling include/bout/test_monitor.cxx In file included from ../../include/utils.hxx:38, from ../../include/bout/monitor.hxx:6, from include/bout/test_monitor.cxx:3: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from include/bout/test_monitor.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling include/bout/test_macro_for_each.cxx Compiling include/bout/test_generic_factory.cxx Compiling include/bout/test_deriv_store.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from include/bout/test_deriv_store.cxx:3: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from include/bout/test_deriv_store.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling include/bout/test_assert.cxx Compiling include/bout/test_array.cxx Compiling field/test_where.cxx In file included from ../../include/field.hxx:41, from field/test_where.cxx:3: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from field/test_where.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling field/test_vector3d.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from field/test_vector3d.cxx:4: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from field/test_vector3d.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling field/test_vector2d.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from field/test_vector2d.cxx:4: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from field/test_vector2d.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling field/test_initialprofiles.cxx Compiling field/test_fieldperp.cxx In file included from ../../include/field.hxx:41, from field/test_initialprofiles.cxx:4: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from field/test_initialprofiles.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling field/test_fieldgroup.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ./test_extras.hxx:12, from field/test_fieldgroup.cxx:2: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from field/test_fieldgroup.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling field/test_field_factory.cxx In file included from ../../include/field.hxx:41, from ../../include/field2d.hxx:34, from field/test_field_factory.cxx:4: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from field/test_field_factory.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling field/test_field3d.cxx Compiling field/test_field2d.cxx Compiling field/test_field.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from field/test_field.cxx:4: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from field/test_field.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ field/test_field2d.cxx: In member function 'virtual void Field2DTest_IterateOverRGN_XGUARDS_Test::TestBody()': field/test_field2d.cxx:538:19: warning: loop variable 'index' creates a copy from type 'const std::vector' [-Wrange-loop-construct] 538 | for (const auto index : test_indices) { | ^~~~~ field/test_field2d.cxx:538:19: note: use reference type to prevent copying 538 | for (const auto index : test_indices) { | ^~~~~ | & field/test_field2d.cxx: In member function 'virtual void Field2DTest_IterateOverRGN_YGUARDS_Test::TestBody()': field/test_field2d.cxx:581:19: warning: loop variable 'index' creates a copy from type 'const std::vector' [-Wrange-loop-construct] 581 | for (const auto index : test_indices) { | ^~~~~ field/test_field2d.cxx:581:19: note: use reference type to prevent copying 581 | for (const auto index : test_indices) { | ^~~~~ | & field/test_field2d.cxx: In member function 'virtual void Field2DTest_IterateOverRGN_ZGUARDS_Test::TestBody()': field/test_field2d.cxx:623:19: warning: loop variable 'index' creates a copy from type 'const std::vector' [-Wrange-loop-construct] 623 | for (const auto index : test_indices) { | ^~~~~ field/test_field2d.cxx:623:19: note: use reference type to prevent copying 623 | for (const auto index : test_indices) { | ^~~~~ | & field/test_field2d.cxx: In member function 'virtual void Field2DTest_IterateOverRGN_NOCORNERS_Test::TestBody()': field/test_field2d.cxx:668:19: warning: loop variable 'index' creates a copy from type 'const std::vector' [-Wrange-loop-construct] 668 | for (const auto index : test_indices) { | ^~~~~ field/test_field2d.cxx:668:19: note: use reference type to prevent copying 668 | for (const auto index : test_indices) { | ^~~~~ | & Compiling gtest-all.o Compiling gmock-all.o Compiling bout_test_main.o In file included from ../../include/bout/bout_enum_class.hxx:27, from ../../include/fft.hxx:33, from bout_test_main.cxx:5: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from bout_test_main.cxx:3: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking bout_test_main.a Linking tests /usr/bin/ld: /tmp/cc9IQwuy.ltrans4.ltrans.o: in function `OutputTest::OutputTest() [clone .lto_priv.0]': /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/unit/sys/test_output.cxx:11: warning: the use of `tmpnam' is dangerous, better use `mkstemp' + SEGFAULT_SIGNALS=segv + make check Linking tests /usr/bin/ld: /tmp/ccrkL60E.ltrans4.ltrans.o: in function `OutputTest::OutputTest() [clone .lto_priv.0]': /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/unit/sys/test_output.cxx:11: warning: the use of `tmpnam' is dangerous, better use `mkstemp' Running unit test Running main() from bout_test_main.cxx [==========] Running 1529 tests from 103 test suites. [----------] Global test environment set-up. [----------] 2 tests from ParseCommandLineArgsDeathTest [----------] 2 tests from ParseCommandLineArgsDeathTest (6 ms total) [----------] 10 tests from FieldTest (1 ms total) [----------] 78 tests from Field2DTest (15 ms total) [----------] 126 tests from Field3DTest (15 ms total) [----------] 47 tests from FieldFactoryCreationTest/0 (6 ms total) [----------] 47 tests from FieldFactoryCreationTest/1 (6 ms total) [----------] 28 tests from FieldFactoryTest (4 ms total) [----------] 6 tests from FieldFactoryCreateAndTransformTest (0 ms total) [----------] 28 tests from FieldGroupTest (0 ms total) [----------] 101 tests from FieldPerpTest (11 ms total) [----------] 10 tests from InitialProfileTest (1 ms total) [ RUN ] Vector2DTest.ApplyBoundaryString Option input:transform_from_field_aligned = 1 (default) [----------] 46 tests from Vector2DTest (4 ms total) [----------] 49 tests from Vector3DTest (4 ms total) [----------] 10 tests from WhereTest (1 ms total) [----------] 12 tests from ArrayTest (0 ms total) [----------] 4 tests from AssertTest (0 ms total) [----------] 25 tests from DerivativeStoreTest (3 ms total) [----------] 6 tests from GenericFactory (0 ms total) [----------] 3 tests from MacroForEachTest (0 ms total) [----------] 3 tests from MacroForEachFnTest (0 ms total) [----------] 2 tests from MonitorTest (0 ms total) [----------] 33 tests from RegionTest (3 ms total) [----------] 6 tests from RegionIndexConversionTest (0 ms total) [----------] 2 tests from RegionIndex2DTest (0 ms total) [----------] 2 tests from RegionIndex3DTest (0 ms total) [----------] 21 tests from RegionIndexTest/0 (0 ms total) [----------] 21 tests from RegionIndexTest/1 (0 ms total) [----------] 21 tests from RegionIndexTest/2 (0 ms total) [----------] 23 tests from FieldIndexTest/0 (0 ms total) [----------] 23 tests from FieldIndexTest/1 (0 ms total) [----------] 48 tests from IndexOffsetTest (1 ms total) [----------] 5 tests from TemplateCombinationsTest (0 ms total) [----------] 6 tests from BoutTraitsTest (0 ms total) [----------] 3 tests from CyclicReduction (0 ms total) [----------] 9 tests from InterpolationFactoryTest (1 ms total) [----------] 11 tests from MaskTest (1 ms total) [----------] 34 tests from GridFromOptionsTest (61 ms total) [----------] 9 tests from ShiftedMetricTest (0 ms total) [----------] 5 tests from BoundaryFactoryTest (0 ms total) [----------] 2 tests from BoutMeshTest (2 ms total) [----------] 4 tests from CoordinatesTest (0 ms total) [----------] 16 tests from Field3DInterpToTest (0 ms total) [----------] 8 tests from Field2DInterpToTest (0 ms total) [----------] 25 tests from MeshTest (1 ms total) [----------] 6 tests from ParallelTransformTest (0 ms total) [----------] 50 tests from SolverTest (15 ms total) [----------] 12 tests from SolverFactoryTest (0 ms total) [----------] 20 tests from ParseCommandLineArgs (0 ms total) [----------] 3 tests from PrintStartupTest (0 ms total) [----------] 4 tests from BoutInitialiseFunctions (0 ms total) [----------] 3 tests from BoutExceptionTest (2036 ms total) [----------] 1 test from BoutRhsFailTest (0 ms total) [----------] 2 tests from BoutParallelRhsFailTest (0 ms total) [----------] 1 test from BoutIterationFailTest (0 ms total) [----------] 29 tests from ExpressionParserTest (0 ms total) [----------] 1 test from ParseExceptionTest (0 ms total) [----------] 11 tests from MsgStackTest (0 ms total) [----------] 99 tests from OptionsTest (11 ms total) [----------] 12 tests from OptionsFieldTest (1 ms total) [----------] 13 tests from OptionsNetCDFTest (15 ms total) [----------] 20 tests from OptionsReaderTest (1 ms total) [----------] 20 tests from OutputTest (0 ms total) [----------] 25 tests from RangeTest (0 ms total) [----------] 13 tests from TimerTest (23 ms total) [----------] 6 tests from TypeNameTest (0 ms total) [----------] 14 tests from MatrixTest (0 ms total) [----------] 14 tests from TensorTest (0 ms total) [----------] 4 tests from Invert3x3Test (0 ms total) [----------] 13 tests from NumberUtilitiesTest (0 ms total) [----------] 18 tests from StringUtilitiesTest (0 ms total) [----------] 4 tests from FunctionTraitsTest (0 ms total) [----------] 3 tests from VariantTest (0 ms total) [----------] 5 tests from FirstX/DerivativesTest (1 ms total) [----------] 5 tests from FirstY/DerivativesTest (1 ms total) [----------] 6 tests from FirstZ/DerivativesTest (2 ms total) [----------] 2 tests from SecondX/DerivativesTest (0 ms total) [----------] 2 tests from SecondY/DerivativesTest (0 ms total) [----------] 3 tests from SecondZ/DerivativesTest (0 ms total) [----------] 1 test from FourthX/DerivativesTest (0 ms total) [----------] 1 test from FourthY/DerivativesTest (0 ms total) [----------] 1 test from FourthZ/DerivativesTest (0 ms total) [----------] 6 tests from UpwindX/DerivativesTestAdvection (1 ms total) [----------] 6 tests from UpwindY/DerivativesTestAdvection (1 ms total) [----------] 6 tests from UpwindZ/DerivativesTestAdvection (1 ms total) [----------] 5 tests from FluxX/DerivativesTestAdvection (0 ms total) [----------] 5 tests from FluxY/DerivativesTestAdvection (0 ms total) [----------] 5 tests from FluxZ/DerivativesTestAdvection (1 ms total) [----------] 5 tests from X/FirstDerivativesInterfaceTest (0 ms total) [----------] 5 tests from FirstY/FirstDerivativesInterfaceTest (0 ms total) [----------] 6 tests from FirstZ/FirstDerivativesInterfaceTest (1 ms total) [----------] 2 tests from X/SecondDerivativesInterfaceTest (0 ms total) [----------] 2 tests from Y/SecondDerivativesInterfaceTest (0 ms total) [----------] 3 tests from Z/SecondDerivativesInterfaceTest (0 ms total) [----------] 1 test from X/FourthDerivativesInterfaceTest (0 ms total) [----------] 1 test from Y/FourthDerivativesInterfaceTest (0 ms total) [----------] 1 test from Z/FourthDerivativesInterfaceTest (0 ms total) [----------] 6 tests from X/UpwindDerivativesInterfaceTest (1 ms total) [----------] 6 tests from Y/UpwindDerivativesInterfaceTest (1 ms total) [----------] 6 tests from Z/UpwindDerivativesInterfaceTest (1 ms total) [----------] 5 tests from X/FluxDerivativesInterfaceTest (0 ms total) [----------] 5 tests from Y/FluxDerivativesInterfaceTest (0 ms total) [----------] 5 tests from Z/FluxDerivativesInterfaceTest (1 ms total) [----------] 10 tests from FFTEvenAndOddSamples/FFTTest (0 ms total) [==========] 1529 tests from 103 test suites ran. (2299 ms total) [ PASSED ] 1529 tests. ======= Making 56 integrated tests ======== test-yupdown ✓ 0.008 s test-vec ✓ 0.008 s test-twistshift ✓ 0.008 s test-twistshift-staggered ✓ 0.008 s test-subdir ✓ 0.391 s test-stopCheck ✓ 0.008 s test-stopCheck-file ✓ 0.008 s test-squash S - all_tests => False test-solver ✓ 0.008 s test-snb ✓ 0.007 s test-smooth ✓ 0.008 s test-slepc-solver S - slepc => False test-restarting ✓ 0.008 s test-restart-io_hdf5 ✓ 0.008 s test-restart-io ✓ 0.008 s test-region-iterator ✓ 0.008 s test-petsc_laplace_MAST-grid S - all_tests => False test-petsc_laplace S - all_tests => False test-options-netcdf S - False => False test-naulin-laplace ✓ 0.008 s test-multigrid_laplace ✓ 0.007 s test-laplacexy S - all_tests => False test-laplacexy-short ✓ 0.007 s test-laplace ✓ 0.007 s test-io_hdf5 ✓ 0.007 s test-io ✓ 0.007 s test-invpar ✓ 0.007 s test-invertable-operator ✓ 0.007 s test-interpolate ✓ 0.008 s test-interchange-instability ✓ 0.007 s test-initial S - not make => False test-include S - all_tests => False test-gyro ✓ 0.007 s test-griddata ✓ 0.007 s test-griddata-yboundary-guards ✓ 0.007 s test-fieldgroupComm S - all_tests => False test-fieldfactory ✓ 0.007 s test-drift-instability S - all_tests => False test-drift-instability-staggered ✓ 0.008 s test-delp2 ✓ 0.007 s test-cyclic ✓ 0.008 s test-coordinates-initialization ✓ 0.008 s test-compile-examples S - all_tests => False test-compile-examples-petsc S - all_tests => False test-command-args ✓ 0.008 s test-collect S - all_tests => False test-code-style S - not make => False test-boutcore/simple-model S - not make => False test-boutcore/print S - not make => False test-boutcore/mms-ddz S - not make => False test-boutcore/legacy-model S - not make => False test-boutcore/collect S - not make => False test-boutcore/collect-staggered S - not make => False test-bout-override-default-option ✓ 0.008 s test-beuler ✓ 0.007 s test-attribs S - all_tests => False ======= All tests passed in 0.66 seconds ======= ======= Running 56 integrated tests ======== test-yupdown ✓ 0.363 s test-vec ✓ 1.517 s test-twistshift ✓ 0.352 s test-twistshift-staggered ✓ 0.354 s test-subdir ✓ 0.728 s test-stopCheck ✓ 0.019 s test-stopCheck-file ✓ 1.972 s test-squash S - all_tests => False test-solver ✓ 7.444 s test-snb ✓ 0.150 s test-smooth ✓ 2.217 s test-slepc-solver S - slepc => False test-restarting ✓ 2.389 s test-restart-io_hdf5 ✓ 1.744 s test-restart-io ✓ 3.605 s test-region-iterator ✓ 0.998 s test-petsc_laplace_MAST-grid S - all_tests => False test-petsc_laplace S - all_tests => False test-options-netcdf S - False => False test-naulin-laplace ✓ 3.539 s test-multigrid_laplace ✓ 489.365 s test-laplacexy S - all_tests => False test-laplacexy-short ✓ 161.055 s test-laplace ✓ 4.232 s test-io_hdf5 ✓ 20.234 s test-io ✓ 42.712 s test-invpar ✓ 132.668 s test-invertable-operator ✓ 1.204 s test-interpolate ✓ 3.701 s test-interchange-instability ✓ 11.924 s test-initial ✓ 15.641 s test-include S - all_tests => False test-gyro ✓ 2.068 s test-griddata ✓ 0.381 s test-griddata-yboundary-guards ✓ 11.536 s test-fieldgroupComm S - all_tests => False test-fieldfactory ✓ 1.993 s test-drift-instability S - all_tests => False test-drift-instability-staggered ✓ 13.459 s test-delp2 ✓ 58.379 s test-cyclic ✓ 6.130 s test-coordinates-initialization ✓ 0.811 s test-compile-examples S - all_tests => False test-compile-examples-petsc S - all_tests => False test-command-args ✓ 1.831 s test-collect S - all_tests => False test-code-style ✓ 0.041 s test-boutcore/simple-model ✓ 0.534 s test-boutcore/print ✓ 0.219 s test-boutcore/mms-ddz ✓ 0.216 s test-boutcore/legacy-model ✓ 0.495 s test-boutcore/collect ✓ 0.324 s test-boutcore/collect-staggered ✓ 0.326 s test-bout-override-default-option ✓ 0.046 s test-beuler ✓ 0.120 s test-attribs S - all_tests => False ======= All tests passed in 1009.04 seconds ======= ======= Making 21 MMS tests ======== wave-1d ✓ 0.008 s wave-1d-y ✓ 0.008 s upwinding3 S - not make => False time S - all_tests => False time-petsc S - not make => False spatial/fci ✓ 0.008 s spatial/diffusion S - all_tests => False spatial/d2dz2 S - all_tests => False spatial/d2dx2 S - all_tests => False spatial/advection S - all_tests => False laplace S - all_tests => False hw S - all_tests => False diffusion2 S - all_tests => False diffusion ✓ 0.008 s derivatives3 S - not make => False bracket S - not make => False advection S - all_tests => False advection/weno3 S - all_tests => False advection/upwind S - all_tests => False advection/central S - all_tests => False advection/arakawa S - all_tests => False ======= All tests passed in 0.03 seconds ======= ======= Running 21 MMS tests ======== wave-1d ✓ 2.766 s wave-1d-y ✓ 3.157 s upwinding3 ✓ 0.840 s time S - all_tests => False time-petsc S - all_tests => False spatial/fci ✓ 4.812 s spatial/diffusion S - all_tests => False spatial/d2dz2 S - all_tests => False spatial/d2dx2 S - all_tests => False spatial/advection S - all_tests => False laplace S - all_tests => False hw S - all_tests => False diffusion2 S - all_tests => False diffusion ✓ 6.094 s derivatives3 ✓ 0.565 s bracket ✓ 0.234 s advection S - all_tests => False advection/weno3 S - all_tests => False advection/upwind S - all_tests => False advection/central S - all_tests => False advection/arakawa S - all_tests => False ======= All tests passed in 18.47 seconds ======= + popd ~/build/BUILD/BOUT++-v4.4.2 + '[' mpich = mpich ']' + . /etc/profile.d/modules.sh ++ '[' -n /bin/sh ']' ++ '[' sh = sh ']' ++ shell=sh ++ '[' -f /usr/share/Modules/init/sh ']' ++ . /usr/share/Modules/init/sh +++ unset _mlshdbg +++ '[' 0 = 1 ']' +++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD' +++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD' +++ unset _mlre _mlIFS +++ '[' -n x ']' +++ _mlIFS=' ' +++ IFS=' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' ++++ eval 'echo ${LD_LIBRARY_PATH+x}' +++++ echo x +++ '[' -n x ']' ++++ eval 'echo ${LD_LIBRARY_PATH}' +++++ echo /usr/lib64/mpich/lib +++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' ' +++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH ++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}' +++++ echo +++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_PRELOAD = LD_PRELOAD ']' +++ '[' LD_PRELOAD = LD_PRELOAD ']' ++++ eval 'echo ${LD_PRELOAD+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_PRELOAD ++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}' +++++ echo +++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' +++ '[' -n '__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']' +++ _mlre='eval __MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 ' ++++ eval '__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\''' 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++++ __MODULES_QUAR_LD_LIBRARY_PATH=/usr/lib64/mpich/lib +++++ LD_LIBRARY_PATH= +++++ LD_PRELOAD= +++++ __MODULES_QUARANTINE_SET=1 +++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++ _mlcode='_module_raw() { eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")"; _mlstatus=$?; return $_mlstatus; }; module() { local _mlredir=0; if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then _mlredir=0; elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then _mlredir=1; fi; fi; case " $@ " in *'\'' --no-redirect '\''*) _mlredir=0 ;; *'\'' --redirect '\''*) _mlredir=1 ;; esac; if [ $_mlredir -eq 0 ]; then _module_raw "$@"; else _module_raw "$@" 2>&1; fi; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; unset __MODULES_AUTOINIT_INPROGRESS; MODULESHOME=/usr/share/Modules; export MODULESHOME; test 0;' +++ _mlret=0 +++ '[' -n x ']' +++ IFS=' ' +++ unset _mlIFS +++ unset _mlre _mlv _mlrv +++ '[' 0 -eq 0 ']' +++ eval '_module_raw() { eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")"; _mlstatus=$?; return $_mlstatus; }; module() { local _mlredir=0; if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then _mlredir=0; elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then _mlredir=1; fi; fi; case " $@ " in *'\'' --no-redirect '\''*) _mlredir=0 ;; *'\'' --redirect '\''*) _mlredir=1 ;; esac; if [ $_mlredir -eq 0 ]; then _module_raw "$@"; else _module_raw "$@" 2>&1; fi; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; unset __MODULES_AUTOINIT_INPROGRESS; MODULESHOME=/usr/share/Modules; export MODULESHOME; test 0;' ++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl ++++ export MODULES_CMD ++++ unset __MODULES_AUTOINIT_INPROGRESS ++++ MODULESHOME=/usr/share/Modules ++++ export MODULESHOME ++++ test 0 +++ '[' /bin/sh '!=' '' ']' +++ export -f _module_raw +++ export -f module ++++ type -t ml +++ '[' function = function ']' +++ export -f ml +++ unset _mlcode _mlret +++ '[' -n '' ']' + module unload mpi/mpich-x86_64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw unload mpi/mpich-x86_64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh unload mpi/mpich-x86_64 + eval 'unset LD_LIBRARY_PATH; unset MPI_COMPILER; MANPATH=/usr/share/man:; export MANPATH; unset MPI_INCLUDE; unset MPI_MAN; unset MPI_PYTHON_SITEARCH; unset _LMFILES_; unset LOADEDMODULES; PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH; unset MPI_PYTHON3_SITEARCH; unset MPI_FORTRAN_MOD_DIR; unset MPI_HOME; unset __MODULES_LMCONFLICT; __MODULES_SHARE_MANPATH=:1; export __MODULES_SHARE_MANPATH; unset MPI_SYSCONFIG; unset MPI_SUFFIX; __MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH; unset MPI_PYTHON2_SITEARCH; unset MPI_LIB; PATH=/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH; unset MPI_BIN; test 0;' ++ unset LD_LIBRARY_PATH ++ unset MPI_COMPILER ++ MANPATH=/usr/share/man: ++ export MANPATH ++ unset MPI_INCLUDE ++ unset MPI_MAN ++ unset MPI_PYTHON_SITEARCH ++ unset _LMFILES_ ++ unset LOADEDMODULES ++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_FORTRAN_MOD_DIR ++ unset MPI_HOME ++ unset __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:1 ++ export __MODULES_SHARE_MANPATH ++ unset MPI_SYSCONFIG ++ unset MPI_SUFFIX ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ unset MPI_PYTHON2_SITEARCH ++ unset MPI_LIB ++ PATH=/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ unset MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + for mpi in mpich openmpi + '[' openmpi = mpich ']' + . /etc/profile.d/modules.sh ++ '[' -n /bin/sh ']' ++ '[' sh = sh ']' ++ shell=sh ++ '[' -f /usr/share/Modules/init/sh ']' ++ . /usr/share/Modules/init/sh +++ unset _mlshdbg +++ '[' 0 = 1 ']' +++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD' +++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD' +++ unset _mlre _mlIFS +++ '[' -n x ']' +++ _mlIFS=' ' +++ IFS=' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' ++++ eval 'echo ${LD_LIBRARY_PATH+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH ++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}' +++++ echo +++ _mlre='LD_LIBRARY_PATH='\'''\'' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_PRELOAD = LD_PRELOAD ']' +++ '[' LD_PRELOAD = LD_PRELOAD ']' ++++ eval 'echo ${LD_PRELOAD+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_PRELOAD ++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}' +++++ echo +++ _mlre='LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' +++ '[' -n 'LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']' +++ _mlre='eval LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 ' ++++ eval 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++++ LD_LIBRARY_PATH= +++++ LD_PRELOAD= +++++ __MODULES_QUARANTINE_SET=1 +++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++ _mlcode='_module_raw() { eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")"; _mlstatus=$?; return $_mlstatus; }; module() { local _mlredir=0; if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then _mlredir=0; elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then _mlredir=1; fi; fi; case " $@ " in *'\'' --no-redirect '\''*) _mlredir=0 ;; *'\'' --redirect '\''*) _mlredir=1 ;; esac; if [ $_mlredir -eq 0 ]; then _module_raw "$@"; else _module_raw "$@" 2>&1; fi; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; unset __MODULES_AUTOINIT_INPROGRESS; MODULESHOME=/usr/share/Modules; export MODULESHOME; LOADEDMODULES=; export LOADEDMODULES; test 0;' +++ _mlret=0 +++ '[' -n x ']' +++ IFS=' ' +++ unset _mlIFS +++ unset _mlre _mlv _mlrv +++ '[' 0 -eq 0 ']' +++ eval '_module_raw() { eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")"; _mlstatus=$?; return $_mlstatus; }; module() { local _mlredir=0; if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then _mlredir=0; elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then _mlredir=1; fi; fi; case " $@ " in *'\'' --no-redirect '\''*) _mlredir=0 ;; *'\'' --redirect '\''*) _mlredir=1 ;; esac; if [ $_mlredir -eq 0 ]; then _module_raw "$@"; else _module_raw "$@" 2>&1; fi; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; unset __MODULES_AUTOINIT_INPROGRESS; MODULESHOME=/usr/share/Modules; export MODULESHOME; LOADEDMODULES=; export LOADEDMODULES; test 0;' ++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl ++++ export MODULES_CMD ++++ unset __MODULES_AUTOINIT_INPROGRESS ++++ MODULESHOME=/usr/share/Modules ++++ export MODULESHOME ++++ LOADEDMODULES= ++++ export LOADEDMODULES ++++ test 0 +++ '[' /bin/sh '!=' '' ']' +++ export -f _module_raw +++ export -f module ++++ type -t ml +++ '[' function = function ']' +++ export -f ml +++ unset _mlcode _mlret +++ '[' -n '' ']' + module load mpi/openmpi-x86_64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw load mpi/openmpi-x86_64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh load mpi/openmpi-x86_64 + eval 'MPI_COMPILER=openmpi-x86_64; export MPI_COMPILER; LD_LIBRARY_PATH=/usr/lib64/openmpi/lib; export LD_LIBRARY_PATH; MANPATH=/usr/share/man/openmpi-x86_64:/usr/share/man:; export MANPATH; MPI_INCLUDE=/usr/include/openmpi-x86_64; export MPI_INCLUDE; MPI_MAN=/usr/share/man/openmpi-x86_64; export MPI_MAN; _LMFILES_=/usr/share/modulefiles/mpi/openmpi-x86_64; export _LMFILES_; LOADEDMODULES=mpi/openmpi-x86_64; export LOADEDMODULES; PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH; MPI_PYTHON3_SITEARCH=/usr/lib64/python3.11/site-packages/openmpi; export MPI_PYTHON3_SITEARCH; MPI_HOME=/usr/lib64/openmpi; export MPI_HOME; MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi; export MPI_FORTRAN_MOD_DIR; __MODULES_LMALTNAME=mpi/openmpi-x86_64\&as\|mpi/default\&as\|mpi/latest; export __MODULES_LMALTNAME; __MODULES_LMCONFLICT=mpi/openmpi-x86_64\&mpi; export __MODULES_LMCONFLICT; __MODULES_SHARE_MANPATH=:2; export __MODULES_SHARE_MANPATH; MPI_SUFFIX=_openmpi; export MPI_SUFFIX; MPI_SYSCONFIG=/etc/openmpi-x86_64; export MPI_SYSCONFIG; __MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH; MPI_LIB=/usr/lib64/openmpi/lib; export MPI_LIB; PATH=/usr/lib64/openmpi/bin:/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH; MPI_BIN=/usr/lib64/openmpi/bin; export MPI_BIN; test 0;' ++ MPI_COMPILER=openmpi-x86_64 ~/build/BUILD/BOUT++-v4.4.2/build_openmpi ~/build/BUILD/BOUT++-v4.4.2 ++ export MPI_COMPILER ++ LD_LIBRARY_PATH=/usr/lib64/openmpi/lib ++ export LD_LIBRARY_PATH ++ MANPATH=/usr/share/man/openmpi-x86_64:/usr/share/man: ++ export MANPATH ++ MPI_INCLUDE=/usr/include/openmpi-x86_64 ++ export MPI_INCLUDE ++ MPI_MAN=/usr/share/man/openmpi-x86_64 ++ export MPI_MAN ++ _LMFILES_=/usr/share/modulefiles/mpi/openmpi-x86_64 ++ export _LMFILES_ ++ LOADEDMODULES=mpi/openmpi-x86_64 ++ export LOADEDMODULES ++ PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.11/site-packages/openmpi ++ export MPI_PYTHON3_SITEARCH ++ MPI_HOME=/usr/lib64/openmpi ++ export MPI_HOME ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi ++ export MPI_FORTRAN_MOD_DIR ++ __MODULES_LMALTNAME='mpi/openmpi-x86_64&as|mpi/default&as|mpi/latest' ++ export __MODULES_LMALTNAME ++ __MODULES_LMCONFLICT='mpi/openmpi-x86_64&mpi' ++ export __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:2 ++ export __MODULES_SHARE_MANPATH ++ MPI_SUFFIX=_openmpi ++ export MPI_SUFFIX ++ MPI_SYSCONFIG=/etc/openmpi-x86_64 ++ export MPI_SYSCONFIG ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ MPI_LIB=/usr/lib64/openmpi/lib ++ export MPI_LIB ++ PATH=/usr/lib64/openmpi/bin:/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ MPI_BIN=/usr/lib64/openmpi/bin ++ export MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + export OMPI_MCA_rmaps_base_oversubscribe=1 + OMPI_MCA_rmaps_base_oversubscribe=1 + pushd build_openmpi + export OMPI_MCA_rmaps_base_oversubscribe=yes + OMPI_MCA_rmaps_base_oversubscribe=yes + export HDF5_USE_FILE_LOCKING=FALSE + HDF5_USE_FILE_LOCKING=FALSE + export BOUT_TEST_TIMEOUT=15m + BOUT_TEST_TIMEOUT=15m + sed 's/ 3s / 30s /' tests/integrated/test-coordinates-initialization/runtest #!/bin/bash make || exit test -z $MPIRUN && MPIRUN='mpirun -np' # Kill the test after 3 seconds, if it hasn't already exited OMP_NUM_THREADS=1 $MPIRUN 3 timeout 30s ./test-coordinates-initialization e=$? if test $e -ne 0 then echo "The test failed. That can be caused by a timeout." echo "If this test is run on high load, it may fail occasionally." echo "The load is:" uptime fi exit $e + make -j2 build-check make --no-print-directory -C tests/integrated make --no-print-directory -C tests/MMS Compiling wave.cxx Compiling test_yupdown.cxx In file included from ../../..//include/field.hxx:41, from ../../..//include/field3d.hxx:30, from ../../..//include/difops.hxx:39, from ../../..//include/bout.hxx:41, from ../../..//include/bout/physicsmodel.hxx:40, from wave.cxx:1: ../../..//include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../..//include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../..//include/boutcomm.hxx:33, from ../../..//include/bout.hxx:39: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_yupdown.cxx:1: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../../include/boutcomm.hxx:33, from ../../../include/bout.hxx:39: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking test_yupdown Compiling testVec.cxx Linking wave In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from ../../../include/bout/physicsmodel.hxx:40, from testVec.cxx:2: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../../include/boutcomm.hxx:33, from ../../../include/bout.hxx:39: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling wave.cxx In file included from ../../..//include/field.hxx:41, from ../../..//include/field3d.hxx:30, from ../../..//include/difops.hxx:39, from ../../..//include/bout.hxx:41, from ../../..//include/bout/physicsmodel.hxx:40, from wave.cxx:1: ../../..//include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../..//include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../..//include/boutcomm.hxx:33, from ../../..//include/bout.hxx:39: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking testVec Compiling test-twistshift.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test-twistshift.cxx:1: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../../include/boutcomm.hxx:33, from ../../../include/bout.hxx:39: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking wave Compiling fci_mms.cxx Linking test-twistshift In file included from ../../../../include/field.hxx:41, from ../../../../include/field3d.hxx:30, from ../../../../include/difops.hxx:39, from ../../../../include/bout.hxx:41, from fci_mms.cxx:1: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../../../include/boutcomm.hxx:33, from ../../../../include/bout.hxx:39: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling test-twistshift.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test-twistshift.cxx:1: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../../include/boutcomm.hxx:33, from ../../../include/bout.hxx:39: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking fci_mms Compiling diffusion.cxx Linking test-twistshift In file included from ../../..//include/field.hxx:41, from ../../..//include/field3d.hxx:30, from ../../..//include/difops.hxx:39, from ../../..//include/bout.hxx:41, from diffusion.cxx:1: ../../..//include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../..//include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../..//include/boutcomm.hxx:33, from ../../..//include/bout.hxx:39: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling fuu.cxx In file included from ../../../../include/field.hxx:41, from ../../../../include/field3d.hxx:30, from ../../../../include/difops.hxx:39, from ../../../../include/bout.hxx:41, from fuu.hxx:4, from fuu.cxx:1: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../../../include/boutcomm.hxx:33, from ../../../../include/bout.hxx:39: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Adding fuu.o to /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-subdir/fuu.a Compiling bar.cxx In file included from ../../../../include/field.hxx:41, from ../../../../include/field3d.hxx:30, from ../../../../include/difops.hxx:39, from ../../../../include/bout.hxx:41, from bar.cxx:1: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../../../include/boutcomm.hxx:33, from ../../../../include/bout.hxx:39: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking cyto Adding bar.o to /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-subdir/bar.a Compiling subdirs.cxx Compiling test_extras.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from ../../../include/bout/physicsmodel.hxx:40, from subdirs.cxx:1: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../../include/boutcomm.hxx:33, from ../../../include/bout.hxx:39: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from test_extras.hxx:12, from test_extras.cxx:2: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from test_extras.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking subdirs Compiling test_stopCheck.cxx Compiling sys/test_variant.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_stopCheck.cxx:6: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../../include/boutcomm.hxx:33, from ../../../include/bout.hxx:39: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/utils.hxx:38, from ../../include/bout/sys/variant.hxx:26, from sys/test_variant.cxx:3: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from sys/test_variant.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling sys/test_utils.cxx Linking test_stopCheck In file included from ../../include/utils.hxx:38, from sys/test_utils.cxx:2: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from sys/test_utils.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling test_stopCheck.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_stopCheck.cxx:6: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../../include/boutcomm.hxx:33, from ../../../include/bout.hxx:39: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking test_stopCheck Compiling test_solver.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from ../../../include/bout/physicsmodel.hxx:40, from test_solver.cxx:2: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../../include/boutcomm.hxx:33, from ../../../include/bout.hxx:39: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling sys/test_type_name.cxx In file included from ../../include/field.hxx:41, from ../../include/field2d.hxx:34, from sys/test_type_name.cxx:3: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from sys/test_type_name.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking test_solver Compiling sys/test_timer.cxx In file included from ../../include/bout/sys/timer.hxx:11, from sys/test_timer.cxx:4: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from sys/test_timer.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling test_snb.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/invert_parderiv.hxx:34, from ../../../include/bout/snb.hxx:1, from test_snb.cxx:1: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../include/field.hxx:34: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling sys/test_range.cxx Compiling sys/test_output.cxx Linking test_snb Compiling test_smooth.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_smooth.cxx:6: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../../include/boutcomm.hxx:33, from ../../../include/bout.hxx:39: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling sys/test_optionsreader.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ./test_extras.hxx:12, from sys/test_optionsreader.cxx:2: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from sys/test_optionsreader.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking test_smooth Compiling test_restarting.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from ../../../include/bout/physicsmodel.hxx:40, from test_restarting.cxx:1: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../../include/boutcomm.hxx:33, from ../../../include/bout.hxx:39: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking test_restarting Compiling test-restart-io.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from ../../../include/bout/physicsmodel.hxx:40, from test-restart-io.cxx:1: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../../include/boutcomm.hxx:33, from ../../../include/bout.hxx:39: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling sys/test_options_netcdf.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from sys/test_options_netcdf.cxx:7: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from sys/test_options_netcdf.cxx:5: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking test-restart-io Compiling test-restart-io.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from ../../../include/bout/physicsmodel.hxx:40, from test-restart-io.cxx:1: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../../include/boutcomm.hxx:33, from ../../../include/bout.hxx:39: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking test-restart-io Compiling sys/test_options_fields.cxx Compiling test_region_iterator.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from sys/test_options_fields.cxx:6: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from sys/test_options_fields.cxx:4: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_region_iterator.cxx:1: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../../include/boutcomm.hxx:33, from ../../../include/bout.hxx:39: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking test_region_iterator Compiling test_naulin_laplace.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_naulin_laplace.cxx:26: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../../include/boutcomm.hxx:33, from ../../../include/bout.hxx:39: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling sys/test_options.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ./test_extras.hxx:12, from sys/test_options.cxx:2: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from sys/test_options.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking test_naulin_laplace Compiling test_multigrid_laplace.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_multigrid_laplace.cxx:26: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../../include/boutcomm.hxx:33, from ../../../include/bout.hxx:39: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking test_multigrid_laplace Compiling test-laplacexy.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test-laplacexy.cxx:26: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../../include/boutcomm.hxx:33, from ../../../include/bout.hxx:39: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking test-laplacexy-short Compiling test_laplace.cxx Compiling sys/test_msg_stack.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_laplace.cxx:6: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../../include/boutcomm.hxx:33, from ../../../include/bout.hxx:39: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ test_laplace.cxx: In function 'int main(int, char**)': test_laplace.cxx:23:33: warning: 'const Field3D invert_laplace(const Field3D&, int, const Field2D*, const Field2D*, const Field2D*)' is deprecated [-Wdeprecated-declarations] 23 | Field3D flag0 = invert_laplace(input, 0); | ~~~~~~~~~~~~~~^~~~~~~~~~ In file included from ../../../include/bout_types.hxx:25, from ../../../include/datafile.hxx:17, from ../../../include/bout.hxx:40: ../../../include/invert_laplace.hxx:284:26: note: declared here 284 | DEPRECATED(const Field3D invert_laplace(const Field3D &b, int flags, const Field2D *a = nullptr, | ^~~~~~~~~~~~~~ ../../../include/bout/deprecated.hxx:18:55: note: in definition of macro 'DEPRECATED' 18 | #define DEPRECATED(func) __attribute__ ((deprecated)) func | ^~~~ test_laplace.cxx:24:33: warning: 'const Field3D invert_laplace(const Field3D&, int, const Field2D*, const Field2D*, const Field2D*)' is deprecated [-Wdeprecated-declarations] 24 | Field3D flag3 = invert_laplace(input, 3); | ~~~~~~~~~~~~~~^~~~~~~~~~ ../../../include/invert_laplace.hxx:284:26: note: declared here 284 | DEPRECATED(const Field3D invert_laplace(const Field3D &b, int flags, const Field2D *a = nullptr, | ^~~~~~~~~~~~~~ ../../../include/bout/deprecated.hxx:18:55: note: in definition of macro 'DEPRECATED' 18 | #define DEPRECATED(func) __attribute__ ((deprecated)) func | ^~~~ test_laplace.cxx:27:34: warning: 'const Field3D invert_laplace(const Field3D&, int, const Field2D*, const Field2D*, const Field2D*)' is deprecated [-Wdeprecated-declarations] 27 | Field3D flag0a = invert_laplace(input, 0, &a); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ ../../../include/invert_laplace.hxx:284:26: note: declared here 284 | DEPRECATED(const Field3D invert_laplace(const Field3D &b, int flags, const Field2D *a = nullptr, | ^~~~~~~~~~~~~~ ../../../include/bout/deprecated.hxx:18:55: note: in definition of macro 'DEPRECATED' 18 | #define DEPRECATED(func) __attribute__ ((deprecated)) func | ^~~~ test_laplace.cxx:28:34: warning: 'const Field3D invert_laplace(const Field3D&, int, const Field2D*, const Field2D*, const Field2D*)' is deprecated [-Wdeprecated-declarations] 28 | Field3D flag3a = invert_laplace(input, 3, &a); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ ../../../include/invert_laplace.hxx:284:26: note: declared here 284 | DEPRECATED(const Field3D invert_laplace(const Field3D &b, int flags, const Field2D *a = nullptr, | ^~~~~~~~~~~~~~ ../../../include/bout/deprecated.hxx:18:55: note: in definition of macro 'DEPRECATED' 18 | #define DEPRECATED(func) __attribute__ ((deprecated)) func | ^~~~ test_laplace.cxx:31:35: warning: 'const Field3D invert_laplace(const Field3D&, int, const Field2D*, const Field2D*, const Field2D*)' is deprecated [-Wdeprecated-declarations] 31 | Field3D flag0ac = invert_laplace(input, 0, &a, &c); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ ../../../include/invert_laplace.hxx:284:26: note: declared here 284 | DEPRECATED(const Field3D invert_laplace(const Field3D &b, int flags, const Field2D *a = nullptr, | ^~~~~~~~~~~~~~ ../../../include/bout/deprecated.hxx:18:55: note: in definition of macro 'DEPRECATED' 18 | #define DEPRECATED(func) __attribute__ ((deprecated)) func | ^~~~ test_laplace.cxx:32:35: warning: 'const Field3D invert_laplace(const Field3D&, int, const Field2D*, const Field2D*, const Field2D*)' is deprecated [-Wdeprecated-declarations] 32 | Field3D flag3ac = invert_laplace(input, 3, &a, &c); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ ../../../include/invert_laplace.hxx:284:26: note: declared here 284 | DEPRECATED(const Field3D invert_laplace(const Field3D &b, int flags, const Field2D *a = nullptr, | ^~~~~~~~~~~~~~ ../../../include/bout/deprecated.hxx:18:55: note: in definition of macro 'DEPRECATED' 18 | #define DEPRECATED(func) __attribute__ ((deprecated)) func | ^~~~ test_laplace.cxx:35:35: warning: 'const Field3D invert_laplace(const Field3D&, int, const Field2D*, const Field2D*, const Field2D*)' is deprecated [-Wdeprecated-declarations] 35 | Field3D flag0ad = invert_laplace(input, 0, &a, nullptr, &d); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../include/invert_laplace.hxx:284:26: note: declared here 284 | DEPRECATED(const Field3D invert_laplace(const Field3D &b, int flags, const Field2D *a = nullptr, | ^~~~~~~~~~~~~~ ../../../include/bout/deprecated.hxx:18:55: note: in definition of macro 'DEPRECATED' 18 | #define DEPRECATED(func) __attribute__ ((deprecated)) func | ^~~~ test_laplace.cxx:36:35: warning: 'const Field3D invert_laplace(const Field3D&, int, const Field2D*, const Field2D*, const Field2D*)' is deprecated [-Wdeprecated-declarations] 36 | Field3D flag3ad = invert_laplace(input, 3, &a, nullptr, &d); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../../include/invert_laplace.hxx:284:26: note: declared here 284 | DEPRECATED(const Field3D invert_laplace(const Field3D &b, int flags, const Field2D *a = nullptr, | ^~~~~~~~~~~~~~ ../../../include/bout/deprecated.hxx:18:55: note: in definition of macro 'DEPRECATED' 18 | #define DEPRECATED(func) __attribute__ ((deprecated)) func | ^~~~ test_laplace.cxx:45:16: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations] 45 | lap->setFlags(4096); | ~~~~~~~~~~~~~^~~~~~ In file included from test_laplace.cxx:7: ../../../include/invert_laplace.hxx:189:16: note: declared here 189 | virtual void setFlags(int f); | ^~~~~~~~ test_laplace.cxx:47:16: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations] 47 | lap->setFlags(8192); | ~~~~~~~~~~~~~^~~~~~ ../../../include/invert_laplace.hxx:189:16: note: declared here 189 | virtual void setFlags(int f); | ^~~~~~~~ test_laplace.cxx:52:16: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations] 52 | lap->setFlags(4096); | ~~~~~~~~~~~~~^~~~~~ ../../../include/invert_laplace.hxx:189:16: note: declared here 189 | virtual void setFlags(int f); | ^~~~~~~~ test_laplace.cxx:54:16: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations] 54 | lap->setFlags(8192); | ~~~~~~~~~~~~~^~~~~~ ../../../include/invert_laplace.hxx:189:16: note: declared here 189 | virtual void setFlags(int f); | ^~~~~~~~ test_laplace.cxx:59:16: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations] 59 | lap->setFlags(4096); | ~~~~~~~~~~~~~^~~~~~ ../../../include/invert_laplace.hxx:189:16: note: declared here 189 | virtual void setFlags(int f); | ^~~~~~~~ test_laplace.cxx:61:16: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations] 61 | lap->setFlags(8192); | ~~~~~~~~~~~~~^~~~~~ ../../../include/invert_laplace.hxx:189:16: note: declared here 189 | virtual void setFlags(int f); | ^~~~~~~~ test_laplace.cxx:67:16: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations] 67 | lap->setFlags(4096); | ~~~~~~~~~~~~~^~~~~~ ../../../include/invert_laplace.hxx:189:16: note: declared here 189 | virtual void setFlags(int f); | ^~~~~~~~ test_laplace.cxx:69:16: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations] 69 | lap->setFlags(8192); | ~~~~~~~~~~~~~^~~~~~ ../../../include/invert_laplace.hxx:189:16: note: declared here 189 | virtual void setFlags(int f); | ^~~~~~~~ In file included from sys/test_msg_stack.cxx:5: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from sys/test_msg_stack.cxx:4: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:390: sys/test_msg_stack.cxx: In member function 'virtual void MsgStackTest_SetPointTest_Test::TestBody()': sys/test_msg_stack.cxx:77:33: warning: 'int MsgStack::setPoint()' is deprecated: Please use `MsgStack::push` with an empty message instead [-Wdeprecated-declarations] 77 | EXPECT_EQ(msg_stack.setPoint(), i); | ~~~~~~~~~~~~~~~~~~^~ ../../include/msg_stack.hxx:76:7: note: declared here 76 | int setPoint(); ///< get a message point | ^~~~~~~~ Linking test_laplace Compiling test_io_hdf5.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_io_hdf5.cxx:10: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../../include/boutcomm.hxx:33, from ../../../include/bout.hxx:39: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling sys/test_expressionparser.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ./test_extras.hxx:12, from sys/test_expressionparser.cxx:6: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from sys/test_expressionparser.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking test_io_hdf5 Compiling test_io.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_io.cxx:10: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../../include/boutcomm.hxx:33, from ../../../include/bout.hxx:39: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling sys/test_boutexception.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ./test_extras.hxx:12, from sys/test_boutexception.cxx:3: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from sys/test_boutexception.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking test_io Compiling src/test_bout++.cxx Compiling test_invpar.cxx In file included from ../../include/field.hxx:41, from ../../include/field3d.hxx:30, from ../../include/difops.hxx:39, from ../../include/bout.hxx:41, from src/test_bout++.cxx:3: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from src/test_bout++.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_invpar.cxx:6: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../../include/boutcomm.hxx:33, from ../../../include/bout.hxx:39: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking test_invpar Compiling solver/test_solverfactory.cxx Compiling invertable_operator.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ./test_extras.hxx:12, from solver/test_solverfactory.cxx:4: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from solver/test_solverfactory.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/field.hxx:41, from ../../../include/fieldperp.hxx:31, from ../../../include/invert_laplace.hxx:41, from invertable_operator.cxx:1: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../../include/field.hxx:34: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking invertable_operator Compiling solver/test_solver.cxx Compiling test_interpolate.cxx In file included from ../../include/field.hxx:41, from ../../include/field2d.hxx:34, from solver/test_solver.cxx:4: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from solver/test_solver.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_interpolate.cxx:13: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../../include/boutcomm.hxx:33, from ../../../include/bout.hxx:39: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking test_interpolate Compiling 2fluid.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from 2fluid.cxx:6: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../../include/boutcomm.hxx:33, from ../../../include/bout.hxx:39: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking 2fluid Compiling test_gyro.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_gyro.cxx:6: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../../include/boutcomm.hxx:33, from ../../../include/bout.hxx:39: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling solver/test_fakesolver.cxx Linking test_gyro In file included from ../../include/utils.hxx:38, from ../../include/options.hxx:45, from ../../include/bout/solver.hxx:42, from solver/test_fakesolver.hxx:6, from solver/test_fakesolver.cxx:1: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from solver/test_fakesolver.hxx:4: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling test_griddata.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_griddata.cxx:1: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../../include/boutcomm.hxx:33, from ../../../include/bout.hxx:39: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking test_griddata Compiling mesh/test_paralleltransform.cxx Compiling test_griddata.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_griddata.cxx:1: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../../include/boutcomm.hxx:33, from ../../../include/bout.hxx:39: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ./test_extras.hxx:12, from mesh/test_paralleltransform.cxx:3: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from mesh/test_paralleltransform.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking test_griddata Compiling test_fieldfactory.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_fieldfactory.cxx:8: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../../include/boutcomm.hxx:33, from ../../../include/bout.hxx:39: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling mesh/test_mesh.cxx Linking test_fieldfactory In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from mesh/test_mesh.cxx:4: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from mesh/test_mesh.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling 2fluid.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from 2fluid.cxx:6: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../../include/boutcomm.hxx:33, from ../../../include/bout.hxx:39: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking 2fluid Compiling mesh/test_interpolation.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from mesh/test_interpolation.cxx:3: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from mesh/test_interpolation.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling test_delp2.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from ../../../include/bout/physicsmodel.hxx:40, from test_delp2.cxx:1: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../../include/boutcomm.hxx:33, from ../../../include/bout.hxx:39: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking test_delp2 Compiling mesh/test_coordinates.cxx In file included from ../../include/field.hxx:41, from ../../include/field3d.hxx:30, from ../../include/bout/paralleltransform.hxx:10, from ../../include/bout/coordinates.hxx:36, from mesh/test_coordinates.cxx:3: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from mesh/test_coordinates.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling test_cyclic.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_cyclic.cxx:6: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../../include/boutcomm.hxx:33, from ../../../include/bout.hxx:39: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling mesh/test_boutmesh.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ../../include/../src/mesh/impls/bout/boutmesh.hxx:7, from mesh/test_boutmesh.cxx:3: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from mesh/test_boutmesh.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking test_cyclic Compiling test-coordinates-initialization.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test-coordinates-initialization.cxx:5: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../../include/boutcomm.hxx:33, from ../../../include/bout.hxx:39: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling mesh/test_boundary_factory.cxx In file included from ../../include/field.hxx:41, from ../../include/field2d.hxx:34, from ../../include/boundary_op.hxx:9, from ../../include/boundary_factory.hxx:7, from mesh/test_boundary_factory.cxx:3: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from mesh/test_boundary_factory.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking test-coordinates-initialization Compiling command-args.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from command-args.cxx:2: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2907, from ../../../include/boutcomm.hxx:33, from ../../../include/bout.hxx:39: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/list:65, from ../../include/utils.hxx:42, from ../../include/field.hxx:44: In member function 'std::__cxx11::_List_base, std::allocator >, std::allocator, std::allocator > > >::_M_get_size() const', inlined from 'std::__cxx11::list, std::allocator >, std::allocator, std::allocator > > >::_M_node_count() const' at /usr/include/c++/13/bits/stl_list.h:728:33, inlined from 'std::__cxx11::list, std::allocator >, std::allocator, std::allocator > > >::size() const' at /usr/include/c++/13/bits/stl_list.h:1150:29, inlined from 'BoundaryFactoryTest_CreateTestBoundaryPositionalArguments_Test::TestBody()' at mesh/test_boundary_factory.cxx:81:3: /usr/include/c++/13/bits/stl_list.h:480:59: warning: potential null pointer dereference [-Wnull-dereference] 480 | size_t _M_get_size() const { return _M_impl._M_node._M_size; } | ^~~~~~~ In member function 'std::__cxx11::list, std::allocator >, std::allocator, std::allocator > > >::empty() const', inlined from 'BoundaryFactoryTest_CreateTestBoundaryKeywords_Test::TestBody()' at mesh/test_boundary_factory.cxx:93:3: /usr/include/c++/13/bits/stl_list.h:1144:38: warning: potential null pointer dereference [-Wnull-dereference] 1144 | { return this->_M_impl._M_node._M_next == &this->_M_impl._M_node; } | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ Linking command-args Compiling mesh/parallel/test_shiftedmetric.cxx Compiling test-bout-override-default-option.cxx In file included from ../../include/bout/bout_enum_class.hxx:27, from ../../include/fft.hxx:33, from mesh/parallel/test_shiftedmetric.cxx:3: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from mesh/parallel/test_shiftedmetric.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/utils.hxx:38, from ../../../include/options.hxx:45, from test-bout-override-default-option.cxx:1: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/stdexcept:38, from /usr/include/c++/13/system_error:43, from /usr/include/c++/13/bits/ios_base.h:46, from /usr/include/c++/13/streambuf:43, from ../../../include/multiostream.hxx:4, from ../../../include/output.hxx:32, from ../../../include/options.hxx:44: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking test-bout-override-default-option Compiling test_beuler.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from ../../../include/bout/physicsmodel.hxx:40, from test_beuler.cxx:3: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/sstream:40, from /usr/include/c++/13/complex:45, from /usr/include/openmpi-x86_64/petsc/petscsystypes.h:315, from /usr/include/openmpi-x86_64/petsc/petscsys.h:47, from /usr/include/openmpi-x86_64/petsc/petscbag.h:4, from /usr/include/openmpi-x86_64/petsc/petsc.h:5, from ../../../include/bout/petsclib.hxx:52, from test_beuler.cxx:2: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling mesh/data/test_gridfromoptions.cxx In file included from ../../include/utils.hxx:38, from ../../include/options.hxx:45, from mesh/data/test_gridfromoptions.cxx:3: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from mesh/data/test_gridfromoptions.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking test_beuler Compiling invert/test_fft.cxx In file included from ../../include/bout/bout_enum_class.hxx:27, from ../../include/fft.hxx:33, from invert/test_fft.cxx:4: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from invert/test_fft.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling include/test_mask.cxx Compiling include/test_interpolation_factory.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ../../include/mask.hxx:27, from include/test_mask.cxx:3: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from include/test_mask.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/field.hxx:41, from ../../include/field3d.hxx:30, from ../../include/interpolation.hxx:31, from include/test_interpolation_factory.cxx:3: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from include/test_interpolation_factory.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling include/test_derivs.cxx In file included from ../../include/bout/bout_enum_class.hxx:27, from ../../include/fft.hxx:33, from include/test_derivs.cxx:4: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from include/test_derivs.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling include/test_cyclic_reduction.cxx In file included from ../../include/utils.hxx:38, from ../../include/cyclic_reduction.hxx:46, from include/test_cyclic_reduction.cxx:4: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from include/test_cyclic_reduction.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling include/bout/test_traits.cxx In file included from ../../include/field.hxx:41, from include/bout/test_traits.cxx:3: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from include/bout/test_traits.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling include/bout/test_template_combinations.cxx Compiling include/bout/test_region.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from include/bout/test_region.cxx:4: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from include/bout/test_region.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling include/bout/test_monitor.cxx In file included from ../../include/utils.hxx:38, from ../../include/bout/monitor.hxx:6, from include/bout/test_monitor.cxx:3: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from include/bout/test_monitor.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling include/bout/test_macro_for_each.cxx Compiling include/bout/test_generic_factory.cxx Compiling include/bout/test_deriv_store.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from include/bout/test_deriv_store.cxx:3: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from include/bout/test_deriv_store.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling include/bout/test_assert.cxx Compiling include/bout/test_array.cxx Compiling field/test_where.cxx In file included from ../../include/field.hxx:41, from field/test_where.cxx:3: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from field/test_where.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling field/test_vector3d.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from field/test_vector3d.cxx:4: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from field/test_vector3d.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling field/test_vector2d.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from field/test_vector2d.cxx:4: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from field/test_vector2d.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling field/test_initialprofiles.cxx In file included from ../../include/field.hxx:41, from field/test_initialprofiles.cxx:4: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from field/test_initialprofiles.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling field/test_fieldperp.cxx Compiling field/test_fieldgroup.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ./test_extras.hxx:12, from field/test_fieldgroup.cxx:2: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from field/test_fieldgroup.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling field/test_field_factory.cxx In file included from ../../include/field.hxx:41, from ../../include/field2d.hxx:34, from field/test_field_factory.cxx:4: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from field/test_field_factory.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling field/test_field3d.cxx Compiling field/test_field2d.cxx Compiling field/test_field.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from field/test_field.cxx:4: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from field/test_field.cxx:1: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ field/test_field2d.cxx: In member function 'virtual void Field2DTest_IterateOverRGN_XGUARDS_Test::TestBody()': field/test_field2d.cxx:538:19: warning: loop variable 'index' creates a copy from type 'const std::vector' [-Wrange-loop-construct] 538 | for (const auto index : test_indices) { | ^~~~~ field/test_field2d.cxx:538:19: note: use reference type to prevent copying 538 | for (const auto index : test_indices) { | ^~~~~ | & field/test_field2d.cxx: In member function 'virtual void Field2DTest_IterateOverRGN_YGUARDS_Test::TestBody()': field/test_field2d.cxx:581:19: warning: loop variable 'index' creates a copy from type 'const std::vector' [-Wrange-loop-construct] 581 | for (const auto index : test_indices) { | ^~~~~ field/test_field2d.cxx:581:19: note: use reference type to prevent copying 581 | for (const auto index : test_indices) { | ^~~~~ | & field/test_field2d.cxx: In member function 'virtual void Field2DTest_IterateOverRGN_ZGUARDS_Test::TestBody()': field/test_field2d.cxx:623:19: warning: loop variable 'index' creates a copy from type 'const std::vector' [-Wrange-loop-construct] 623 | for (const auto index : test_indices) { | ^~~~~ field/test_field2d.cxx:623:19: note: use reference type to prevent copying 623 | for (const auto index : test_indices) { | ^~~~~ | & field/test_field2d.cxx: In member function 'virtual void Field2DTest_IterateOverRGN_NOCORNERS_Test::TestBody()': field/test_field2d.cxx:668:19: warning: loop variable 'index' creates a copy from type 'const std::vector' [-Wrange-loop-construct] 668 | for (const auto index : test_indices) { | ^~~~~ field/test_field2d.cxx:668:19: note: use reference type to prevent copying 668 | for (const auto index : test_indices) { | ^~~~~ | & Compiling gtest-all.o Compiling gmock-all.o Compiling bout_test_main.o In file included from ../../include/bout/bout_enum_class.hxx:27, from ../../include/fft.hxx:33, from bout_test_main.cxx:5: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/c++/13/ext/concurrence.h:34, from /usr/include/c++/13/bits/shared_ptr_base.h:62, from /usr/include/c++/13/bits/shared_ptr.h:53, from /usr/include/c++/13/memory:80, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55, from bout_test_main.cxx:3: /usr/include/c++/13/exception:122:8: note: declared here 122 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking bout_test_main.a Linking tests /usr/bin/ld: /tmp/ccM9LZoG.ltrans4.ltrans.o: in function `OutputTest::OutputTest() [clone .lto_priv.0]': /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/unit/sys/test_output.cxx:11: warning: the use of `tmpnam' is dangerous, better use `mkstemp' + SEGFAULT_SIGNALS=segv + make check Linking tests /usr/bin/ld: /tmp/cck0rOzM.ltrans4.ltrans.o: in function `OutputTest::OutputTest() [clone .lto_priv.0]': /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/unit/sys/test_output.cxx:11: warning: the use of `tmpnam' is dangerous, better use `mkstemp' Running unit test Running main() from bout_test_main.cxx [==========] Running 1529 tests from 103 test suites. [----------] Global test environment set-up. [----------] 2 tests from ParseCommandLineArgsDeathTest [----------] 2 tests from ParseCommandLineArgsDeathTest (5 ms total) [----------] 10 tests from FieldTest (1 ms total) [----------] 78 tests from Field2DTest (442 ms total) [----------] 126 tests from Field3DTest (16 ms total) [----------] 47 tests from FieldFactoryCreationTest/0 (6 ms total) [----------] 47 tests from FieldFactoryCreationTest/1 (6 ms total) [----------] 28 tests from FieldFactoryTest (4 ms total) [----------] 6 tests from FieldFactoryCreateAndTransformTest (0 ms total) [----------] 28 tests from FieldGroupTest (0 ms total) [----------] 101 tests from FieldPerpTest (11 ms total) [----------] 10 tests from InitialProfileTest (1 ms total) [ RUN ] Vector2DTest.ApplyBoundaryString Option input:transform_from_field_aligned = 1 (default) [----------] 46 tests from Vector2DTest (4 ms total) [----------] 49 tests from Vector3DTest (4 ms total) [----------] 10 tests from WhereTest (1 ms total) [----------] 12 tests from ArrayTest (0 ms total) [----------] 4 tests from AssertTest (0 ms total) [----------] 25 tests from DerivativeStoreTest (3 ms total) [----------] 6 tests from GenericFactory (0 ms total) [----------] 3 tests from MacroForEachTest (0 ms total) [----------] 3 tests from MacroForEachFnTest (0 ms total) [----------] 2 tests from MonitorTest (0 ms total) [----------] 33 tests from RegionTest (3 ms total) [----------] 6 tests from RegionIndexConversionTest (0 ms total) [----------] 2 tests from RegionIndex2DTest (0 ms total) [----------] 2 tests from RegionIndex3DTest (0 ms total) [----------] 21 tests from RegionIndexTest/0 (0 ms total) [----------] 21 tests from RegionIndexTest/1 (0 ms total) [----------] 21 tests from RegionIndexTest/2 (0 ms total) [----------] 23 tests from FieldIndexTest/0 (0 ms total) [----------] 23 tests from FieldIndexTest/1 (0 ms total) [----------] 48 tests from IndexOffsetTest (1 ms total) [----------] 5 tests from TemplateCombinationsTest (0 ms total) [----------] 6 tests from BoutTraitsTest (0 ms total) [----------] 3 tests from CyclicReduction (0 ms total) [----------] 9 tests from InterpolationFactoryTest (1 ms total) [----------] 11 tests from MaskTest (1 ms total) [----------] 34 tests from GridFromOptionsTest (62 ms total) [----------] 9 tests from ShiftedMetricTest (0 ms total) [----------] 5 tests from BoundaryFactoryTest (0 ms total) [----------] 2 tests from BoutMeshTest (2 ms total) [----------] 4 tests from CoordinatesTest (0 ms total) [----------] 16 tests from Field3DInterpToTest (0 ms total) [----------] 8 tests from Field2DInterpToTest (0 ms total) [----------] 25 tests from MeshTest (1 ms total) [----------] 6 tests from ParallelTransformTest (0 ms total) [----------] 50 tests from SolverTest (15 ms total) [----------] 12 tests from SolverFactoryTest (0 ms total) [----------] 20 tests from ParseCommandLineArgs (0 ms total) [----------] 3 tests from PrintStartupTest (0 ms total) [----------] 4 tests from BoutInitialiseFunctions (0 ms total) [----------] 3 tests from BoutExceptionTest (2287 ms total) [----------] 1 test from BoutRhsFailTest (0 ms total) [----------] 2 tests from BoutParallelRhsFailTest (0 ms total) [----------] 1 test from BoutIterationFailTest (0 ms total) [----------] 29 tests from ExpressionParserTest (0 ms total) [----------] 1 test from ParseExceptionTest (0 ms total) [----------] 11 tests from MsgStackTest (0 ms total) [----------] 99 tests from OptionsTest (11 ms total) [----------] 12 tests from OptionsFieldTest (1 ms total) [----------] 13 tests from OptionsNetCDFTest (16 ms total) [----------] 20 tests from OptionsReaderTest (1 ms total) [----------] 20 tests from OutputTest (0 ms total) [----------] 25 tests from RangeTest (0 ms total) [----------] 13 tests from TimerTest (23 ms total) [----------] 6 tests from TypeNameTest (0 ms total) [----------] 14 tests from MatrixTest (0 ms total) [----------] 14 tests from TensorTest (0 ms total) [----------] 4 tests from Invert3x3Test (0 ms total) [----------] 13 tests from NumberUtilitiesTest (0 ms total) [----------] 18 tests from StringUtilitiesTest (0 ms total) [----------] 4 tests from FunctionTraitsTest (0 ms total) [----------] 3 tests from VariantTest (0 ms total) [----------] 5 tests from FirstX/DerivativesTest (1 ms total) [----------] 5 tests from FirstY/DerivativesTest (1 ms total) [----------] 6 tests from FirstZ/DerivativesTest (2 ms total) [----------] 2 tests from SecondX/DerivativesTest (0 ms total) [----------] 2 tests from SecondY/DerivativesTest (0 ms total) [----------] 3 tests from SecondZ/DerivativesTest (0 ms total) [----------] 1 test from FourthX/DerivativesTest (0 ms total) [----------] 1 test from FourthY/DerivativesTest (0 ms total) [----------] 1 test from FourthZ/DerivativesTest (0 ms total) [----------] 6 tests from UpwindX/DerivativesTestAdvection (1 ms total) [----------] 6 tests from UpwindY/DerivativesTestAdvection (1 ms total) [----------] 6 tests from UpwindZ/DerivativesTestAdvection (1 ms total) [----------] 5 tests from FluxX/DerivativesTestAdvection (0 ms total) [----------] 5 tests from FluxY/DerivativesTestAdvection (0 ms total) [----------] 5 tests from FluxZ/DerivativesTestAdvection (1 ms total) [----------] 5 tests from X/FirstDerivativesInterfaceTest (0 ms total) [----------] 5 tests from FirstY/FirstDerivativesInterfaceTest (0 ms total) [----------] 6 tests from FirstZ/FirstDerivativesInterfaceTest (1 ms total) [----------] 2 tests from X/SecondDerivativesInterfaceTest (0 ms total) [----------] 2 tests from Y/SecondDerivativesInterfaceTest (0 ms total) [----------] 3 tests from Z/SecondDerivativesInterfaceTest (0 ms total) [----------] 1 test from X/FourthDerivativesInterfaceTest (0 ms total) [----------] 1 test from Y/FourthDerivativesInterfaceTest (0 ms total) [----------] 1 test from Z/FourthDerivativesInterfaceTest (0 ms total) [----------] 6 tests from X/UpwindDerivativesInterfaceTest (1 ms total) [----------] 6 tests from Y/UpwindDerivativesInterfaceTest (1 ms total) [----------] 6 tests from Z/UpwindDerivativesInterfaceTest (1 ms total) [----------] 5 tests from X/FluxDerivativesInterfaceTest (0 ms total) [----------] 5 tests from Y/FluxDerivativesInterfaceTest (0 ms total) [----------] 5 tests from Z/FluxDerivativesInterfaceTest (0 ms total) [----------] 10 tests from FFTEvenAndOddSamples/FFTTest (0 ms total) [==========] 1529 tests from 103 test suites ran. (2979 ms total) [ PASSED ] 1529 tests. ======= Making 56 integrated tests ======== test-yupdown ✓ 0.008 s test-vec ✓ 0.008 s test-twistshift ✓ 0.008 s test-twistshift-staggered ✓ 0.008 s test-subdir ✓ 0.807 s test-stopCheck ✓ 0.008 s test-stopCheck-file ✓ 0.008 s test-squash S - all_tests => False test-solver ✓ 0.008 s test-snb ✓ 0.008 s test-smooth ✓ 0.008 s test-slepc-solver S - slepc => False test-restarting ✓ 0.008 s test-restart-io_hdf5 ✓ 0.008 s test-restart-io ✓ 0.008 s test-region-iterator ✓ 0.008 s test-petsc_laplace_MAST-grid S - all_tests => False test-petsc_laplace S - all_tests => False test-options-netcdf S - False => False test-naulin-laplace ✓ 0.008 s test-multigrid_laplace ✓ 0.008 s test-laplacexy S - all_tests => False test-laplacexy-short ✓ 0.008 s test-laplace ✓ 0.008 s test-io_hdf5 ✓ 0.008 s test-io ✓ 0.008 s test-invpar ✓ 0.008 s test-invertable-operator ✓ 0.008 s test-interpolate ✓ 0.008 s test-interchange-instability ✓ 0.008 s test-initial S - not make => False test-include S - all_tests => False test-gyro ✓ 0.008 s test-griddata ✓ 0.008 s test-griddata-yboundary-guards ✓ 0.008 s test-fieldgroupComm S - all_tests => False test-fieldfactory ✓ 0.008 s test-drift-instability S - all_tests => False test-drift-instability-staggered ✓ 0.008 s test-delp2 ✓ 0.008 s test-cyclic ✓ 0.008 s test-coordinates-initialization ✓ 0.008 s test-compile-examples S - all_tests => False test-compile-examples-petsc S - all_tests => False test-command-args ✓ 0.008 s test-collect S - all_tests => False test-code-style S - not make => False test-boutcore/simple-model S - not make => False test-boutcore/print S - not make => False test-boutcore/mms-ddz S - not make => False test-boutcore/legacy-model S - not make => False test-boutcore/collect S - not make => False test-boutcore/collect-staggered S - not make => False test-bout-override-default-option ✓ 0.008 s test-beuler ✓ 0.008 s test-attribs S - all_tests => False ======= All tests passed in 1.09 seconds ======= ======= Running 56 integrated tests ======== test-yupdown ✓ 1.813 s test-vec ✓ 2.634 s test-twistshift ✓ 1.797 s test-twistshift-staggered ✓ 1.791 s test-subdir ✓ 2.579 s test-stopCheck ✓ 0.021 s test-stopCheck-file ✓ 7.851 s test-squash S - all_tests => False test-solver ✓ 9.280 s test-snb ✓ 1.592 s test-smooth ✓ 7.927 s test-slepc-solver S - slepc => False test-restarting ✓ 9.666 s test-restart-io_hdf5 ✓ 5.689 s test-restart-io ✓ 7.869 s test-region-iterator ✓ 3.979 s test-petsc_laplace_MAST-grid S - all_tests => False test-petsc_laplace S - all_tests => False test-options-netcdf S - False => False test-naulin-laplace ✓ 5.312 s test-multigrid_laplace ✓ 6.475 s test-laplacexy S - all_tests => False test-laplacexy-short ✓ 34.012 s test-laplace ✓ 7.883 s test-io_hdf5 ✓ 42.790 s test-io ✓ 63.694 s test-invpar ✓ 404.934 s test-invertable-operator ✓ 4.029 s test-interpolate ✓ 20.630 s test-interchange-instability ✓ 14.528 s test-initial ✓ 19.692 s test-include S - all_tests => False test-gyro ✓ 5.909 s test-griddata ✓ 1.771 s test-griddata-yboundary-guards ✓ 16.314 s test-fieldgroupComm S - all_tests => False test-fieldfactory ✓ 5.979 s test-drift-instability S - all_tests => False test-drift-instability-staggered ✓ 17.740 s test-delp2 ✓ 31.211 s test-cyclic ✓ 22.368 s test-coordinates-initialization ✓ 1.712 s test-compile-examples S - all_tests => False test-compile-examples-petsc S - all_tests => False test-command-args ✓ 22.097 s test-collect S - all_tests => False test-code-style ✓ 0.039 s test-boutcore/simple-model ✓ 0.936 s test-boutcore/print ✓ 1.641 s test-boutcore/mms-ddz ✓ 0.639 s test-boutcore/legacy-model ✓ 1.925 s test-boutcore/collect ✓ 0.750 s test-boutcore/collect-staggered ✓ 1.750 s test-bout-override-default-option ✓ 0.048 s test-beuler ✓ 1.544 s test-attribs S - all_tests => False ======= All tests passed in 822.85 seconds ======= ======= Making 21 MMS tests ======== wave-1d ✓ 0.008 s wave-1d-y ✓ 0.008 s upwinding3 S - not make => False time S - all_tests => False time-petsc S - not make => False spatial/fci ✓ 0.008 s spatial/diffusion S - all_tests => False spatial/d2dz2 S - all_tests => False spatial/d2dx2 S - all_tests => False spatial/advection S - all_tests => False laplace S - all_tests => False hw S - all_tests => False diffusion2 S - all_tests => False diffusion ✓ 0.008 s derivatives3 S - not make => False bracket S - not make => False advection S - all_tests => False advection/weno3 S - all_tests => False advection/upwind S - all_tests => False advection/central S - all_tests => False advection/arakawa S - all_tests => False ======= All tests passed in 0.03 seconds ======= ======= Running 21 MMS tests ======== wave-1d ✓ 11.219 s wave-1d-y ✓ 11.595 s upwinding3 ✓ 2.440 s time S - all_tests => False time-petsc S - all_tests => False spatial/fci ✓ 19.616 s spatial/diffusion S - all_tests => False spatial/d2dz2 S - all_tests => False spatial/d2dx2 S - all_tests => False spatial/advection S - all_tests => False laplace S - all_tests => False hw S - all_tests => False diffusion2 S - all_tests => False diffusion ✓ 17.044 s derivatives3 ✓ 2.001 s bracket ✓ 1.657 s advection S - all_tests => False advection/weno3 S - all_tests => False advection/upwind S - all_tests => False advection/central S - all_tests => False advection/arakawa S - all_tests => False ======= All tests passed in 65.57 seconds ======= + popd ~/build/BUILD/BOUT++-v4.4.2 + '[' openmpi = mpich ']' + . /etc/profile.d/modules.sh ++ '[' -n /bin/sh ']' ++ '[' sh = sh ']' ++ shell=sh ++ '[' -f /usr/share/Modules/init/sh ']' ++ . /usr/share/Modules/init/sh +++ unset _mlshdbg +++ '[' 0 = 1 ']' +++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD' +++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD' +++ unset _mlre _mlIFS +++ '[' -n x ']' +++ _mlIFS=' ' +++ IFS=' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' ++++ eval 'echo ${LD_LIBRARY_PATH+x}' +++++ echo x +++ '[' -n x ']' ++++ eval 'echo ${LD_LIBRARY_PATH}' +++++ echo /usr/lib64/openmpi/lib +++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' ' +++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH ++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}' +++++ echo +++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_PRELOAD = LD_PRELOAD ']' +++ '[' LD_PRELOAD = LD_PRELOAD ']' ++++ eval 'echo ${LD_PRELOAD+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_PRELOAD ++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}' +++++ echo +++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' +++ '[' -n '__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']' +++ _mlre='eval __MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 ' ++++ eval '__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\''' 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++++ __MODULES_QUAR_LD_LIBRARY_PATH=/usr/lib64/openmpi/lib +++++ LD_LIBRARY_PATH= +++++ LD_PRELOAD= +++++ __MODULES_QUARANTINE_SET=1 +++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++ _mlcode='_module_raw() { eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")"; _mlstatus=$?; return $_mlstatus; }; module() { local _mlredir=0; if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then _mlredir=0; elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then _mlredir=1; fi; fi; case " $@ " in *'\'' --no-redirect '\''*) _mlredir=0 ;; *'\'' --redirect '\''*) _mlredir=1 ;; esac; if [ $_mlredir -eq 0 ]; then _module_raw "$@"; else _module_raw "$@" 2>&1; fi; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; unset __MODULES_AUTOINIT_INPROGRESS; MODULESHOME=/usr/share/Modules; export MODULESHOME; test 0;' +++ _mlret=0 +++ '[' -n x ']' +++ IFS=' ' +++ unset _mlIFS +++ unset _mlre _mlv _mlrv +++ '[' 0 -eq 0 ']' +++ eval '_module_raw() { eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")"; _mlstatus=$?; return $_mlstatus; }; module() { local _mlredir=0; if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then _mlredir=0; elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then _mlredir=1; fi; fi; case " $@ " in *'\'' --no-redirect '\''*) _mlredir=0 ;; *'\'' --redirect '\''*) _mlredir=1 ;; esac; if [ $_mlredir -eq 0 ]; then _module_raw "$@"; else _module_raw "$@" 2>&1; fi; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; unset __MODULES_AUTOINIT_INPROGRESS; MODULESHOME=/usr/share/Modules; export MODULESHOME; test 0;' ++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl ++++ export MODULES_CMD ++++ unset __MODULES_AUTOINIT_INPROGRESS ++++ MODULESHOME=/usr/share/Modules ++++ export MODULESHOME ++++ test 0 +++ '[' /bin/sh '!=' '' ']' +++ export -f _module_raw +++ export -f module ++++ type -t ml +++ '[' function = function ']' +++ export -f ml +++ unset _mlcode _mlret +++ '[' -n '' ']' + module unload mpi/openmpi-x86_64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw unload mpi/openmpi-x86_64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh unload mpi/openmpi-x86_64 + eval 'unset MPI_COMPILER; unset LD_LIBRARY_PATH; MANPATH=/usr/share/man:; export MANPATH; unset MPI_INCLUDE; unset MPI_MAN; unset _LMFILES_; unset LOADEDMODULES; PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH; unset MPI_PYTHON3_SITEARCH; unset MPI_HOME; unset MPI_FORTRAN_MOD_DIR; unset __MODULES_LMALTNAME; unset __MODULES_LMCONFLICT; __MODULES_SHARE_MANPATH=:1; export __MODULES_SHARE_MANPATH; unset MPI_SUFFIX; unset MPI_SYSCONFIG; __MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH; unset MPI_LIB; PATH=/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH; unset MPI_BIN; test 0;' ++ unset MPI_COMPILER ++ unset LD_LIBRARY_PATH ++ MANPATH=/usr/share/man: ++ export MANPATH ++ unset MPI_INCLUDE ++ unset MPI_MAN ++ unset _LMFILES_ ++ unset LOADEDMODULES ++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_HOME ++ unset MPI_FORTRAN_MOD_DIR ++ unset __MODULES_LMALTNAME ++ unset __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:1 ++ export __MODULES_SHARE_MANPATH ++ unset MPI_SUFFIX ++ unset MPI_SYSCONFIG ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ unset MPI_LIB ++ PATH=/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ unset MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + RPM_EC=0 ++ jobs -p + exit 0 Processing files: bout++-mpich-4.4.2-5.fc39.x86_64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.DqSxmt + umask 022 + cd /builddir/build/BUILD + cd BOUT++-v4.4.2 + DOCDIR=/builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/share/doc/bout++-mpich + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/share/doc/bout++-mpich + cp -pr README.md /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/share/doc/bout++-mpich + cp -pr CITATION.bib /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/share/doc/bout++-mpich + cp -pr CITATION.cff /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/share/doc/bout++-mpich + cp -pr CHANGELOG.md /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/share/doc/bout++-mpich + cp -pr CONTRIBUTING.md /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/share/doc/bout++-mpich + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.Wa8W0V + umask 022 + cd /builddir/build/BUILD + cd BOUT++-v4.4.2 + LICENSEDIR=/builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/share/licenses/bout++-mpich + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/share/licenses/bout++-mpich + cp -pr LICENSE /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/share/licenses/bout++-mpich + cp -pr LICENSE.GPL /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/share/licenses/bout++-mpich + RPM_EC=0 ++ jobs -p + exit 0 Provides: bout++-mpich = 4.4.2-5.fc39 bout++-mpich(x86-64) = 4.4.2-5.fc39 bundled(libpvode) libbout++.so.4.4.0()(64bit)(mpich-x86_64) libpvode.so.1.0.0()(64bit)(mpich-x86_64) libpvpre.so.1.0.0()(64bit)(mpich-x86_64) Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/sh libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.4)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libgcc_s.so.1(GCC_4.0.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libmpi.so.12()(64bit)(mpich-x86_64) libmpicxx.so.12()(64bit)(mpich-x86_64) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.5)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.19)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) rtld(GNU_HASH) Recommends: environment-modules python3-boutdata python3-boututils python3-xbout Processing files: bout++-mpich-devel-4.4.2-5.fc39.x86_64 Provides: bout++-mpich-devel = 4.4.2-5.fc39 bout++-mpich-devel(x86-64) = 4.4.2-5.fc39 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: fftw-devel flexiblas-devel gcc-c++ gettext-devel hdf5-devel hdf5-mpich-devel make mpark-variant-devel mpich-devel netcdf-cxx4-devel netcdf-devel petsc-mpich-devel sundials-devel sundials-mpich-devel zlib-devel Processing files: python3-bout++-mpich-4.4.2-5.fc39.x86_64 Provides: python-bout++-mpich = 4.4.2-5.fc39 python3-bout++-mpich = 4.4.2-5.fc39 python3-bout++-mpich(x86-64) = 4.4.2-5.fc39 python3.11-bout++-mpich = 4.4.2-5.fc39 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libbout++.so.4.4.0()(64bit)(mpich-x86_64) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.4)(64bit) libfftw3.so.3()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libnetcdf.so.19()(64bit) libnetcdf_c++4.so.1()(64bit) libpetsc.so.3.17()(64bit)(mpich-x86_64) libpvode.so.1.0.0()(64bit)(mpich-x86_64) libpvpre.so.1.0.0()(64bit)(mpich-x86_64) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libsundials_arkode.so.4()(64bit)(mpich-x86_64) libsundials_cvode.so.5()(64bit)(mpich-x86_64) libsundials_ida.so.5()(64bit)(mpich-x86_64) libsundials_nvecparallel.so.5()(64bit)(mpich-x86_64) python(abi) = 3.11 rtld(GNU_HASH) Recommends: python3-xbout Processing files: bout++-openmpi-4.4.2-5.fc39.x86_64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.q3K32C + umask 022 + cd /builddir/build/BUILD + cd BOUT++-v4.4.2 + DOCDIR=/builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/share/doc/bout++-openmpi + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/share/doc/bout++-openmpi + cp -pr README.md /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/share/doc/bout++-openmpi + cp -pr CITATION.bib /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/share/doc/bout++-openmpi + cp -pr CITATION.cff /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/share/doc/bout++-openmpi + cp -pr CHANGELOG.md /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/share/doc/bout++-openmpi + cp -pr CONTRIBUTING.md /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/share/doc/bout++-openmpi + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.ZeSY69 + umask 022 + cd /builddir/build/BUILD + cd BOUT++-v4.4.2 + LICENSEDIR=/builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/share/licenses/bout++-openmpi + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/share/licenses/bout++-openmpi + cp -pr LICENSE /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/share/licenses/bout++-openmpi + cp -pr LICENSE.GPL /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/share/licenses/bout++-openmpi + RPM_EC=0 ++ jobs -p + exit 0 Provides: bout++-openmpi = 4.4.2-5.fc39 bout++-openmpi(x86-64) = 4.4.2-5.fc39 bundled(libpvode) libbout++.so.4.4.0()(64bit)(openmpi-x86_64) libpvode.so.1.0.0()(64bit)(openmpi-x86_64) libpvpre.so.1.0.0()(64bit)(openmpi-x86_64) Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/sh libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.4)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libgcc_s.so.1(GCC_4.0.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libmpi.so.40()(64bit)(openmpi-x86_64) libmpi_cxx.so.40()(64bit)(openmpi-x86_64) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.5)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.19)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) rtld(GNU_HASH) Recommends: environment-modules python3-boutdata python3-boututils python3-xbout Processing files: bout++-openmpi-devel-4.4.2-5.fc39.x86_64 Provides: bout++-openmpi-devel = 4.4.2-5.fc39 bout++-openmpi-devel(x86-64) = 4.4.2-5.fc39 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: fftw-devel flexiblas-devel gcc-c++ gettext-devel hdf5-devel hdf5-openmpi-devel make mpark-variant-devel netcdf-cxx4-devel netcdf-devel openmpi-devel petsc-openmpi-devel sundials-devel sundials-openmpi-devel zlib-devel Processing files: python3-bout++-openmpi-4.4.2-5.fc39.x86_64 Provides: python-bout++-openmpi = 4.4.2-5.fc39 python3-bout++-openmpi = 4.4.2-5.fc39 python3-bout++-openmpi(x86-64) = 4.4.2-5.fc39 python3.11-bout++-openmpi = 4.4.2-5.fc39 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libbout++.so.4.4.0()(64bit)(openmpi-x86_64) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.4)(64bit) libfftw3.so.3()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libmpi.so.40()(64bit)(openmpi-x86_64) libmpi_cxx.so.40()(64bit)(openmpi-x86_64) libnetcdf.so.19()(64bit) libnetcdf_c++4.so.1()(64bit) libpetsc.so.3.17()(64bit)(openmpi-x86_64) libpvode.so.1.0.0()(64bit)(openmpi-x86_64) libpvpre.so.1.0.0()(64bit)(openmpi-x86_64) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libsundials_arkode.so.4()(64bit)(openmpi-x86_64) libsundials_cvode.so.5()(64bit)(openmpi-x86_64) libsundials_ida.so.5()(64bit)(openmpi-x86_64) libsundials_nvecparallel.so.5()(64bit)(openmpi-x86_64) python(abi) = 3.11 rtld(GNU_HASH) Recommends: python3-xbout Processing files: bout++-common-4.4.2-5.fc39.x86_64 Provides: bout++-common = 4.4.2-5.fc39 bout++-common(x86-64) = 4.4.2-5.fc39 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: python3-bout++-4.4.2-5.fc39.noarch Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.9JRlMc + umask 022 + cd /builddir/build/BUILD + cd BOUT++-v4.4.2 + DOCDIR=/builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/share/doc/python3-bout++ + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/share/doc/python3-bout++ + cp -pr README.md /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/share/doc/python3-bout++ + cp -pr CITATION.bib /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/share/doc/python3-bout++ + cp -pr CITATION.cff /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/share/doc/python3-bout++ + cp -pr CHANGELOG.md /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/share/doc/python3-bout++ + cp -pr CONTRIBUTING.md /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/share/doc/python3-bout++ + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.OEeKpc + umask 022 + cd /builddir/build/BUILD + cd BOUT++-v4.4.2 + LICENSEDIR=/builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/share/licenses/python3-bout++ + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/share/licenses/python3-bout++ + cp -pr LICENSE /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/share/licenses/python3-bout++ + cp -pr LICENSE.GPL /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64/usr/share/licenses/python3-bout++ + RPM_EC=0 ++ jobs -p + exit 0 Provides: python-bout++ = 4.4.2-5.fc39 python-bout_runners = 4.4.2-5.fc39 python-zoidberg = 4.4.2-5.fc39 python3-bout++ = 4.4.2-5.fc39 python3-bout_runners = 4.4.2-5.fc39 python3-zoidberg = 4.4.2-5.fc39 python3.11-bout++ = 4.4.2-5.fc39 python3.11-bout_runners = 4.4.2-5.fc39 python3.11-zoidberg = 4.4.2-5.fc39 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: python(abi) = 3.11 Recommends: python3-boutdata python3-boututils python3-matplotlib python3-scipy Processing files: bout++-doc-4.4.2-5.fc39.noarch Provides: bout++-doc = 4.4.2-5.fc39 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: bout++-debugsource-4.4.2-5.fc39.x86_64 Provides: bout++-debugsource = 4.4.2-5.fc39 bout++-debugsource(x86-64) = 4.4.2-5.fc39 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: bout++-debuginfo-4.4.2-5.fc39.x86_64 Provides: bout++-debuginfo = 4.4.2-5.fc39 bout++-debuginfo(x86-64) = 4.4.2-5.fc39 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: bout++-debugsource(x86-64) = 4.4.2-5.fc39 Processing files: bout++-mpich-debuginfo-4.4.2-5.fc39.x86_64 Provides: bout++-mpich-debuginfo = 4.4.2-5.fc39 bout++-mpich-debuginfo(x86-64) = 4.4.2-5.fc39 debuginfo(build-id) = 07b3177e4f35ae30f37f90e5659c9a72adb204cf debuginfo(build-id) = 5d61b9e7e8f5b3623864b834ad5d1fa2cea548d6 debuginfo(build-id) = ef62d1263e01047184ec6c018ab3c8b3bc7018cf Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: bout++-debugsource(x86-64) = 4.4.2-5.fc39 Processing files: python3-bout++-mpich-debuginfo-4.4.2-5.fc39.x86_64 Provides: debuginfo(build-id) = 8a6750aca1cb09012784b1b410627a2e386fa7fd python-bout++-mpich-debuginfo = 4.4.2-5.fc39 python3-bout++-mpich-debuginfo = 4.4.2-5.fc39 python3-bout++-mpich-debuginfo(x86-64) = 4.4.2-5.fc39 python3.11-bout++-mpich-debuginfo = 4.4.2-5.fc39 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: bout++-debugsource(x86-64) = 4.4.2-5.fc39 Processing files: bout++-openmpi-debuginfo-4.4.2-5.fc39.x86_64 Provides: bout++-openmpi-debuginfo = 4.4.2-5.fc39 bout++-openmpi-debuginfo(x86-64) = 4.4.2-5.fc39 debuginfo(build-id) = 065dbe331cd6f729b720134d5736d5f72e846d53 debuginfo(build-id) = 569f6bc8dadffaafe669c2124cbdcfaf56dc0cb5 debuginfo(build-id) = 663de850d6f2c9deef929d950280571bae96a07f Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: bout++-debugsource(x86-64) = 4.4.2-5.fc39 Processing files: python3-bout++-openmpi-debuginfo-4.4.2-5.fc39.x86_64 Provides: debuginfo(build-id) = beea8099b73783ea7f6f9a325b7f2d538b3f8a7b python-bout++-openmpi-debuginfo = 4.4.2-5.fc39 python3-bout++-openmpi-debuginfo = 4.4.2-5.fc39 python3-bout++-openmpi-debuginfo(x86-64) = 4.4.2-5.fc39 python3.11-bout++-openmpi-debuginfo = 4.4.2-5.fc39 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: bout++-debugsource(x86-64) = 4.4.2-5.fc39 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64 Wrote: /builddir/build/RPMS/bout++-mpich-debuginfo-4.4.2-5.fc39.x86_64.rpm Wrote: /builddir/build/RPMS/bout++-openmpi-debuginfo-4.4.2-5.fc39.x86_64.rpm Wrote: /builddir/build/RPMS/bout++-debugsource-4.4.2-5.fc39.x86_64.rpm Wrote: /builddir/build/RPMS/python3-bout++-openmpi-debuginfo-4.4.2-5.fc39.x86_64.rpm Wrote: /builddir/build/RPMS/bout++-doc-4.4.2-5.fc39.noarch.rpm Wrote: /builddir/build/RPMS/bout++-debuginfo-4.4.2-5.fc39.x86_64.rpm Wrote: /builddir/build/RPMS/python3-bout++-mpich-debuginfo-4.4.2-5.fc39.x86_64.rpm Wrote: /builddir/build/RPMS/bout++-openmpi-4.4.2-5.fc39.x86_64.rpm Wrote: /builddir/build/RPMS/python3-bout++-4.4.2-5.fc39.noarch.rpm Wrote: /builddir/build/RPMS/bout++-openmpi-devel-4.4.2-5.fc39.x86_64.rpm Wrote: /builddir/build/RPMS/bout++-mpich-4.4.2-5.fc39.x86_64.rpm Wrote: /builddir/build/RPMS/bout++-mpich-devel-4.4.2-5.fc39.x86_64.rpm Wrote: /builddir/build/RPMS/python3-bout++-openmpi-4.4.2-5.fc39.x86_64.rpm Wrote: /builddir/build/RPMS/bout++-common-4.4.2-5.fc39.x86_64.rpm Wrote: /builddir/build/RPMS/python3-bout++-mpich-4.4.2-5.fc39.x86_64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.U3j98G + umask 022 + cd /builddir/build/BUILD + cd BOUT++-v4.4.2 + /usr/bin/rm -rf /builddir/build/BUILDROOT/bout++-4.4.2-5.fc39.x86_64 + RPM_EC=0 ++ jobs -p + exit 0 Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.le9KiC + umask 022 + cd /builddir/build/BUILD + rm -rf BOUT++-v4.4.2 BOUT++-v4.4.2.gemspec + RPM_EC=0 ++ jobs -p + exit 0 Finish: rpmbuild bout++-4.4.2-5.fc39.src.rpm Finish: build phase for bout++-4.4.2-5.fc39.src.rpm INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-x86_64-1680615527.303785/root/var/log/dnf.rpm.log /var/lib/mock/fedora-rawhide-x86_64-1680615527.303785/root/var/log/dnf.librepo.log /var/lib/mock/fedora-rawhide-x86_64-1680615527.303785/root/var/log/dnf.log INFO: Done(/var/lib/copr-rpmbuild/results/bout++-4.4.2-5.fc39.src.rpm) Config(child) 67 minutes 29 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool