Mock Version: 3.5 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/python-pyphi.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1676882734.506937/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.6l_nerza:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.6l_nerza:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'f72aa97889c84bf6bff0314b9b57b151', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1676882734.506937/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.6l_nerza:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/python-pyphi.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1674172800 Wrote: /builddir/build/SRPMS/python-pyphi-1.2.1-6.fc39.src.rpm Child return code was: 0 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -br --target x86_64 --nodeps /builddir/build/SPECS/python-pyphi.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1676882734.506937/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.6l_nerza:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueraiseExc=FalseprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.6l_nerza:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '421a6f04e82a42209d7f1a41a59fb775', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1676882734.506937/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.6l_nerza:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -br --target x86_64 --nodeps /builddir/build/SPECS/python-pyphi.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1674172800 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.L9uzkN + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf pyphi-1.2.1 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/pyphi-1.2.1.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd pyphi-1.2.1 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + /usr/bin/git init -q + /usr/bin/git config user.name rpm-build + /usr/bin/git config user.email '' + /usr/bin/git config gc.auto 0 + /usr/bin/git add --force . + /usr/bin/git commit -q --allow-empty -a --author 'rpm-build ' -m 'python-pyphi-1.2.1 base' + /usr/bin/git checkout --track -b rpm-build Switched to a new branch 'rpm-build' branch 'rpm-build' set up to track 'master'. + /usr/bin/git apply --index --reject - + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0001-fix-py3.10-correct-collections-import.patch Checking patch pyphi/db.py... Checking patch pyphi/labels.py... Checking patch pyphi/models/actual_causation.py... Checking patch pyphi/models/cmp.py... Checking patch pyphi/models/cuts.py... Checking patch pyphi/models/subsystem.py... Checking patch pyphi/registry.py... Applied patch pyphi/db.py cleanly. Applied patch pyphi/labels.py cleanly. Applied patch pyphi/models/actual_causation.py cleanly. Applied patch pyphi/models/cmp.py cleanly. Applied patch pyphi/models/cuts.py cleanly. Applied patch pyphi/models/subsystem.py cleanly. Applied patch pyphi/registry.py cleanly. + /usr/bin/git commit -q -m 0001-fix-py3.10-correct-collections-import.patch --author 'rpm-build ' + sed -i s/sphinxcontrib.napoleon/sphinx.ext.napoleon/ docs/conf.py + find pyphi -name '*.py' -exec sed -i '/#!\/usr\/bin\/env python3/ d' '{}' ';' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.n7O5n8 + umask 022 + cd /builddir/build/BUILD + cd pyphi-1.2.1 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + '[' -f setup.py ']' + echo 'python3dist(setuptools) >= 40.8' + echo 'python3dist(wheel)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/pyphi-1.2.1/.pyproject-builddir + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + TMPDIR=/builddir/build/BUILD/pyphi-1.2.1/.pyproject-builddir + RPM_TOXENV=py311 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/pyphi-1.2.1/pyproject-wheeldir -r Handling setuptools >= 40.8 from default build backend Requirement satisfied: setuptools >= 40.8 (installed: setuptools 65.5.1) Handling wheel from default build backend Requirement not satisfied: wheel Exiting dependency generation pass: build backend + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-pyphi-1.2.1-6.fc39.buildreqs.nosrc.rpm Child return code was: 11 Dynamic buildrequires detected Going to install missing buildrequires. See root.log for details. ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -br --target x86_64 --nodeps /builddir/build/SPECS/python-pyphi.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1676882734.506937/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.6l_nerza:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueraiseExc=FalseprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.6l_nerza:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'f7406af1398a44e4a75a1c9b63a5f20f', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1676882734.506937/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.6l_nerza:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -br --target x86_64 --nodeps /builddir/build/SPECS/python-pyphi.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1674172800 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.lgX5qA + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf pyphi-1.2.1 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/pyphi-1.2.1.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd pyphi-1.2.1 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + /usr/bin/git init -q + /usr/bin/git config user.name rpm-build + /usr/bin/git config user.email '' + /usr/bin/git config gc.auto 0 + /usr/bin/git add --force . + /usr/bin/git commit -q --allow-empty -a --author 'rpm-build ' -m 'python-pyphi-1.2.1 base' + /usr/bin/git checkout --track -b rpm-build Switched to a new branch 'rpm-build' branch 'rpm-build' set up to track 'master'. + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0001-fix-py3.10-correct-collections-import.patch + /usr/bin/git apply --index --reject - Checking patch pyphi/db.py... Checking patch pyphi/labels.py... Checking patch pyphi/models/actual_causation.py... Checking patch pyphi/models/cmp.py... Checking patch pyphi/models/cuts.py... Checking patch pyphi/models/subsystem.py... Checking patch pyphi/registry.py... Applied patch pyphi/db.py cleanly. Applied patch pyphi/labels.py cleanly. Applied patch pyphi/models/actual_causation.py cleanly. Applied patch pyphi/models/cmp.py cleanly. Applied patch pyphi/models/cuts.py cleanly. Applied patch pyphi/models/subsystem.py cleanly. Applied patch pyphi/registry.py cleanly. + /usr/bin/git commit -q -m 0001-fix-py3.10-correct-collections-import.patch --author 'rpm-build ' + sed -i s/sphinxcontrib.napoleon/sphinx.ext.napoleon/ docs/conf.py + find pyphi -name '*.py' -exec sed -i '/#!\/usr\/bin\/env python3/ d' '{}' ';' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.zXlWaM + umask 022 + cd /builddir/build/BUILD + cd pyphi-1.2.1 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + '[' -f setup.py ']' + echo 'python3dist(setuptools) >= 40.8' + echo 'python3dist(wheel)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/pyphi-1.2.1/.pyproject-builddir + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + TMPDIR=/builddir/build/BUILD/pyphi-1.2.1/.pyproject-builddir + RPM_TOXENV=py311 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/pyphi-1.2.1/pyproject-wheeldir -r Handling setuptools >= 40.8 from default build backend Requirement satisfied: setuptools >= 40.8 (installed: setuptools 65.5.1) Handling wheel from default build backend Requirement satisfied: wheel (installed: wheel 0.38.4) /usr/lib/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'upload-dir' will not be supported in future versions. Please use the underscore name 'upload_dir' instead warnings.warn( HOOK STDOUT: running egg_info HOOK STDOUT: creating pyphi.egg-info HOOK STDOUT: writing pyphi.egg-info/PKG-INFO HOOK STDOUT: writing dependency_links to pyphi.egg-info/dependency_links.txt HOOK STDOUT: writing requirements to pyphi.egg-info/requires.txt HOOK STDOUT: writing top-level names to pyphi.egg-info/top_level.txt HOOK STDOUT: writing manifest file 'pyphi.egg-info/SOURCES.txt' HOOK STDOUT: reading manifest file 'pyphi.egg-info/SOURCES.txt' HOOK STDOUT: reading manifest template 'MANIFEST.in' HOOK STDOUT: adding license file 'LICENSE.md' HOOK STDOUT: writing manifest file 'pyphi.egg-info/SOURCES.txt' Handling wheel from get_requires_for_build_wheel Requirement satisfied: wheel (installed: wheel 0.38.4) HOOK STDOUT: running dist_info HOOK STDOUT: writing pyphi.egg-info/PKG-INFO HOOK STDOUT: writing dependency_links to pyphi.egg-info/dependency_links.txt HOOK STDOUT: writing requirements to pyphi.egg-info/requires.txt HOOK STDOUT: writing top-level names to pyphi.egg-info/top_level.txt HOOK STDOUT: reading manifest file 'pyphi.egg-info/SOURCES.txt' HOOK STDOUT: reading manifest template 'MANIFEST.in' HOOK STDOUT: adding license file 'LICENSE.md' HOOK STDOUT: writing manifest file 'pyphi.egg-info/SOURCES.txt' HOOK STDOUT: creating '/builddir/build/BUILD/pyphi-1.2.1/pyphi-1.2.1.dist-info' Handling decorator (>=4.0.0) from hook generated metadata: Requires-Dist Requirement not satisfied: decorator (>=4.0.0) Handling joblib (>=0.8.0) from hook generated metadata: Requires-Dist Requirement not satisfied: joblib (>=0.8.0) Handling numpy (>=1.11.0) from hook generated metadata: Requires-Dist Requirement not satisfied: numpy (>=1.11.0) Handling psutil (>=2.1.1) from hook generated metadata: Requires-Dist Requirement not satisfied: psutil (>=2.1.1) Handling pyemd (>=0.3.0) from hook generated metadata: Requires-Dist Requirement not satisfied: pyemd (>=0.3.0) Handling pymongo (>=2.7.1) from hook generated metadata: Requires-Dist Requirement not satisfied: pymongo (>=2.7.1) Handling pyyaml (>=3.13) from hook generated metadata: Requires-Dist Requirement not satisfied: pyyaml (>=3.13) Handling redis (>=2.10.5) from hook generated metadata: Requires-Dist Requirement not satisfied: redis (>=2.10.5) Handling scipy (>=0.13.3) from hook generated metadata: Requires-Dist Requirement not satisfied: scipy (>=0.13.3) Handling tblib (>=1.3.2) from hook generated metadata: Requires-Dist Requirement not satisfied: tblib (>=1.3.2) Handling tqdm (>=4.20.0) from hook generated metadata: Requires-Dist Requirement not satisfied: tqdm (>=4.20.0) + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-pyphi-1.2.1-6.fc39.buildreqs.nosrc.rpm Child return code was: 11 Dynamic buildrequires detected Going to install missing buildrequires. See root.log for details. ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -br --target x86_64 --nodeps /builddir/build/SPECS/python-pyphi.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1676882734.506937/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.6l_nerza:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueraiseExc=FalseprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.6l_nerza:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '3baaca1f9eeb4f77931c1fcbcc4f28be', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1676882734.506937/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.6l_nerza:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -br --target x86_64 --nodeps /builddir/build/SPECS/python-pyphi.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1674172800 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.fAdoxC + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf pyphi-1.2.1 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/pyphi-1.2.1.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd pyphi-1.2.1 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + /usr/bin/git init -q + /usr/bin/git config user.name rpm-build + /usr/bin/git config user.email '' + /usr/bin/git config gc.auto 0 + /usr/bin/git add --force . + /usr/bin/git commit -q --allow-empty -a --author 'rpm-build ' -m 'python-pyphi-1.2.1 base' + /usr/bin/git checkout --track -b rpm-build Switched to a new branch 'rpm-build' branch 'rpm-build' set up to track 'master'. + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0001-fix-py3.10-correct-collections-import.patch + /usr/bin/git apply --index --reject - Checking patch pyphi/db.py... Checking patch pyphi/labels.py... Checking patch pyphi/models/actual_causation.py... Checking patch pyphi/models/cmp.py... Checking patch pyphi/models/cuts.py... Checking patch pyphi/models/subsystem.py... Checking patch pyphi/registry.py... Applied patch pyphi/db.py cleanly. Applied patch pyphi/labels.py cleanly. Applied patch pyphi/models/actual_causation.py cleanly. Applied patch pyphi/models/cmp.py cleanly. Applied patch pyphi/models/cuts.py cleanly. Applied patch pyphi/models/subsystem.py cleanly. Applied patch pyphi/registry.py cleanly. + /usr/bin/git commit -q -m 0001-fix-py3.10-correct-collections-import.patch --author 'rpm-build ' + sed -i s/sphinxcontrib.napoleon/sphinx.ext.napoleon/ docs/conf.py + find pyphi -name '*.py' -exec sed -i '/#!\/usr\/bin\/env python3/ d' '{}' ';' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.TZED7v + umask 022 + cd /builddir/build/BUILD + cd pyphi-1.2.1 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + '[' -f setup.py ']' + echo 'python3dist(setuptools) >= 40.8' + echo 'python3dist(wheel)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/pyphi-1.2.1/.pyproject-builddir + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + TMPDIR=/builddir/build/BUILD/pyphi-1.2.1/.pyproject-builddir + RPM_TOXENV=py311 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/pyphi-1.2.1/pyproject-wheeldir -r Handling setuptools >= 40.8 from default build backend Requirement satisfied: setuptools >= 40.8 (installed: setuptools 65.5.1) Handling wheel from default build backend Requirement satisfied: wheel (installed: wheel 0.38.4) /usr/lib/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'upload-dir' will not be supported in future versions. Please use the underscore name 'upload_dir' instead warnings.warn( HOOK STDOUT: running egg_info HOOK STDOUT: creating pyphi.egg-info HOOK STDOUT: writing pyphi.egg-info/PKG-INFO HOOK STDOUT: writing dependency_links to pyphi.egg-info/dependency_links.txt HOOK STDOUT: writing requirements to pyphi.egg-info/requires.txt HOOK STDOUT: writing top-level names to pyphi.egg-info/top_level.txt HOOK STDOUT: writing manifest file 'pyphi.egg-info/SOURCES.txt' HOOK STDOUT: reading manifest file 'pyphi.egg-info/SOURCES.txt' HOOK STDOUT: reading manifest template 'MANIFEST.in' HOOK STDOUT: adding license file 'LICENSE.md' HOOK STDOUT: writing manifest file 'pyphi.egg-info/SOURCES.txt' Handling wheel from get_requires_for_build_wheel Requirement satisfied: wheel (installed: wheel 0.38.4) HOOK STDOUT: running dist_info HOOK STDOUT: writing pyphi.egg-info/PKG-INFO HOOK STDOUT: writing dependency_links to pyphi.egg-info/dependency_links.txt HOOK STDOUT: writing requirements to pyphi.egg-info/requires.txt HOOK STDOUT: writing top-level names to pyphi.egg-info/top_level.txt HOOK STDOUT: reading manifest file 'pyphi.egg-info/SOURCES.txt' HOOK STDOUT: reading manifest template 'MANIFEST.in' HOOK STDOUT: adding license file 'LICENSE.md' HOOK STDOUT: writing manifest file 'pyphi.egg-info/SOURCES.txt' HOOK STDOUT: creating '/builddir/build/BUILD/pyphi-1.2.1/pyphi-1.2.1.dist-info' Handling decorator (>=4.0.0) from hook generated metadata: Requires-Dist Requirement satisfied: decorator (>=4.0.0) (installed: decorator 5.1.1) Handling joblib (>=0.8.0) from hook generated metadata: Requires-Dist Requirement satisfied: joblib (>=0.8.0) (installed: joblib 1.2.0) Handling numpy (>=1.11.0) from hook generated metadata: Requires-Dist Requirement satisfied: numpy (>=1.11.0) (installed: numpy 1.24.1) Handling psutil (>=2.1.1) from hook generated metadata: Requires-Dist Requirement satisfied: psutil (>=2.1.1) (installed: psutil 5.9.2) Handling pyemd (>=0.3.0) from hook generated metadata: Requires-Dist Requirement satisfied: pyemd (>=0.3.0) (installed: pyemd 0.5.1) Handling pymongo (>=2.7.1) from hook generated metadata: Requires-Dist Requirement satisfied: pymongo (>=2.7.1) (installed: pymongo 4.2.0) Handling pyyaml (>=3.13) from hook generated metadata: Requires-Dist Requirement satisfied: pyyaml (>=3.13) (installed: pyyaml 6.0) Handling redis (>=2.10.5) from hook generated metadata: Requires-Dist Requirement satisfied: redis (>=2.10.5) (installed: redis 4.3.4) Handling scipy (>=0.13.3) from hook generated metadata: Requires-Dist Requirement satisfied: scipy (>=0.13.3) (installed: scipy 1.8.1) Handling tblib (>=1.3.2) from hook generated metadata: Requires-Dist Requirement satisfied: tblib (>=1.3.2) (installed: tblib 1.7.0) Handling tqdm (>=4.20.0) from hook generated metadata: Requires-Dist Requirement satisfied: tqdm (>=4.20.0) (installed: tqdm 4.64.1) + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-pyphi-1.2.1-6.fc39.buildreqs.nosrc.rpm Child return code was: 11 Dynamic buildrequires detected Going to install missing buildrequires. See root.log for details. ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -ba --noprep --target x86_64 --nodeps /builddir/build/SPECS/python-pyphi.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1676882734.506937/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.6l_nerza:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.6l_nerza:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '84e2a336118a4668b544ad8f84aafcc0', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1676882734.506937/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.6l_nerza:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -ba --noprep --target x86_64 --nodeps /builddir/build/SPECS/python-pyphi.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1674172800 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.MXRbSN + umask 022 + cd /builddir/build/BUILD + cd pyphi-1.2.1 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + '[' -f setup.py ']' + echo 'python3dist(setuptools) >= 40.8' + echo 'python3dist(wheel)' + rm -rfv pyphi-1.2.1.dist-info/ removed 'pyphi-1.2.1.dist-info/LICENSE.md' removed 'pyphi-1.2.1.dist-info/METADATA' removed 'pyphi-1.2.1.dist-info/top_level.txt' removed directory 'pyphi-1.2.1.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/pyphi-1.2.1/.pyproject-builddir + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + TMPDIR=/builddir/build/BUILD/pyphi-1.2.1/.pyproject-builddir + RPM_TOXENV=py311 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/pyphi-1.2.1/pyproject-wheeldir -r Handling setuptools >= 40.8 from default build backend Requirement satisfied: setuptools >= 40.8 (installed: setuptools 65.5.1) Handling wheel from default build backend Requirement satisfied: wheel (installed: wheel 0.38.4) /usr/lib/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'upload-dir' will not be supported in future versions. Please use the underscore name 'upload_dir' instead warnings.warn( HOOK STDOUT: running egg_info HOOK STDOUT: writing pyphi.egg-info/PKG-INFO HOOK STDOUT: writing dependency_links to pyphi.egg-info/dependency_links.txt HOOK STDOUT: writing requirements to pyphi.egg-info/requires.txt HOOK STDOUT: writing top-level names to pyphi.egg-info/top_level.txt HOOK STDOUT: reading manifest file 'pyphi.egg-info/SOURCES.txt' HOOK STDOUT: reading manifest template 'MANIFEST.in' HOOK STDOUT: adding license file 'LICENSE.md' HOOK STDOUT: writing manifest file 'pyphi.egg-info/SOURCES.txt' Handling wheel from get_requires_for_build_wheel Requirement satisfied: wheel (installed: wheel 0.38.4) HOOK STDOUT: running dist_info HOOK STDOUT: writing pyphi.egg-info/PKG-INFO HOOK STDOUT: writing dependency_links to pyphi.egg-info/dependency_links.txt HOOK STDOUT: writing requirements to pyphi.egg-info/requires.txt HOOK STDOUT: writing top-level names to pyphi.egg-info/top_level.txt HOOK STDOUT: reading manifest file 'pyphi.egg-info/SOURCES.txt' HOOK STDOUT: reading manifest template 'MANIFEST.in' HOOK STDOUT: adding license file 'LICENSE.md' HOOK STDOUT: writing manifest file 'pyphi.egg-info/SOURCES.txt' HOOK STDOUT: creating '/builddir/build/BUILD/pyphi-1.2.1/pyphi-1.2.1.dist-info' Handling decorator (>=4.0.0) from hook generated metadata: Requires-Dist Requirement satisfied: decorator (>=4.0.0) (installed: decorator 5.1.1) Handling joblib (>=0.8.0) from hook generated metadata: Requires-Dist Requirement satisfied: joblib (>=0.8.0) (installed: joblib 1.2.0) Handling numpy (>=1.11.0) from hook generated metadata: Requires-Dist Requirement satisfied: numpy (>=1.11.0) (installed: numpy 1.24.1) Handling psutil (>=2.1.1) from hook generated metadata: Requires-Dist Requirement satisfied: psutil (>=2.1.1) (installed: psutil 5.9.2) Handling pyemd (>=0.3.0) from hook generated metadata: Requires-Dist Requirement satisfied: pyemd (>=0.3.0) (installed: pyemd 0.5.1) Handling pymongo (>=2.7.1) from hook generated metadata: Requires-Dist Requirement satisfied: pymongo (>=2.7.1) (installed: pymongo 4.2.0) Handling pyyaml (>=3.13) from hook generated metadata: Requires-Dist Requirement satisfied: pyyaml (>=3.13) (installed: pyyaml 6.0) Handling redis (>=2.10.5) from hook generated metadata: Requires-Dist Requirement satisfied: redis (>=2.10.5) (installed: redis 4.3.4) Handling scipy (>=0.13.3) from hook generated metadata: Requires-Dist Requirement satisfied: scipy (>=0.13.3) (installed: scipy 1.8.1) Handling tblib (>=1.3.2) from hook generated metadata: Requires-Dist Requirement satisfied: tblib (>=1.3.2) (installed: tblib 1.7.0) Handling tqdm (>=4.20.0) from hook generated metadata: Requires-Dist Requirement satisfied: tqdm (>=4.20.0) (installed: tqdm 4.64.1) + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.r3bHym + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd pyphi-1.2.1 + mkdir -p /builddir/build/BUILD/pyphi-1.2.1/.pyproject-builddir + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + TMPDIR=/builddir/build/BUILD/pyphi-1.2.1/.pyproject-builddir + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_wheel.py /builddir/build/BUILD/pyphi-1.2.1/pyproject-wheeldir Processing /builddir/build/BUILD/pyphi-1.2.1 Preparing metadata (pyproject.toml): started Running command Preparing metadata (pyproject.toml) /usr/lib/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'upload-dir' will not be supported in future versions. Please use the underscore name 'upload_dir' instead warnings.warn( running dist_info creating /builddir/build/BUILD/pyphi-1.2.1/.pyproject-builddir/pip-modern-metadata-v0ccwd9f/pyphi.egg-info writing /builddir/build/BUILD/pyphi-1.2.1/.pyproject-builddir/pip-modern-metadata-v0ccwd9f/pyphi.egg-info/PKG-INFO writing dependency_links to /builddir/build/BUILD/pyphi-1.2.1/.pyproject-builddir/pip-modern-metadata-v0ccwd9f/pyphi.egg-info/dependency_links.txt writing requirements to /builddir/build/BUILD/pyphi-1.2.1/.pyproject-builddir/pip-modern-metadata-v0ccwd9f/pyphi.egg-info/requires.txt writing top-level names to /builddir/build/BUILD/pyphi-1.2.1/.pyproject-builddir/pip-modern-metadata-v0ccwd9f/pyphi.egg-info/top_level.txt writing manifest file '/builddir/build/BUILD/pyphi-1.2.1/.pyproject-builddir/pip-modern-metadata-v0ccwd9f/pyphi.egg-info/SOURCES.txt' reading manifest file '/builddir/build/BUILD/pyphi-1.2.1/.pyproject-builddir/pip-modern-metadata-v0ccwd9f/pyphi.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.md' writing manifest file '/builddir/build/BUILD/pyphi-1.2.1/.pyproject-builddir/pip-modern-metadata-v0ccwd9f/pyphi.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/pyphi-1.2.1/.pyproject-builddir/pip-modern-metadata-v0ccwd9f/pyphi-1.2.1.dist-info' Preparing metadata (pyproject.toml): finished with status 'done' Building wheels for collected packages: pyphi Building wheel for pyphi (pyproject.toml): started Running command Building wheel for pyphi (pyproject.toml) /usr/lib/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'upload-dir' will not be supported in future versions. Please use the underscore name 'upload_dir' instead warnings.warn( running bdist_wheel running build running build_py creating build creating build/lib creating build/lib/pyphi copying pyphi/__about__.py -> build/lib/pyphi copying pyphi/__init__.py -> build/lib/pyphi copying pyphi/actual.py -> build/lib/pyphi copying pyphi/cache.py -> build/lib/pyphi copying pyphi/conf.py -> build/lib/pyphi copying pyphi/connectivity.py -> build/lib/pyphi copying pyphi/constants.py -> build/lib/pyphi copying pyphi/convert.py -> build/lib/pyphi copying pyphi/direction.py -> build/lib/pyphi copying pyphi/distance.py -> build/lib/pyphi copying pyphi/distribution.py -> build/lib/pyphi copying pyphi/examples.py -> build/lib/pyphi copying pyphi/exceptions.py -> build/lib/pyphi copying pyphi/jsonify.py -> build/lib/pyphi copying pyphi/log.py -> build/lib/pyphi copying pyphi/macro.py -> build/lib/pyphi copying pyphi/memory.py -> build/lib/pyphi copying pyphi/network.py -> build/lib/pyphi copying pyphi/node.py -> build/lib/pyphi copying pyphi/partition.py -> build/lib/pyphi copying pyphi/subsystem.py -> build/lib/pyphi copying pyphi/timescale.py -> build/lib/pyphi copying pyphi/tpm.py -> build/lib/pyphi copying pyphi/utils.py -> build/lib/pyphi copying pyphi/validate.py -> build/lib/pyphi copying pyphi/db.py -> build/lib/pyphi copying pyphi/labels.py -> build/lib/pyphi copying pyphi/registry.py -> build/lib/pyphi creating build/lib/pyphi/models copying pyphi/models/__init__.py -> build/lib/pyphi/models copying pyphi/models/fmt.py -> build/lib/pyphi/models copying pyphi/models/mechanism.py -> build/lib/pyphi/models copying pyphi/models/actual_causation.py -> build/lib/pyphi/models copying pyphi/models/cmp.py -> build/lib/pyphi/models copying pyphi/models/cuts.py -> build/lib/pyphi/models copying pyphi/models/subsystem.py -> build/lib/pyphi/models creating build/lib/pyphi/compute copying pyphi/compute/__init__.py -> build/lib/pyphi/compute copying pyphi/compute/distance.py -> build/lib/pyphi/compute copying pyphi/compute/network.py -> build/lib/pyphi/compute copying pyphi/compute/parallel.py -> build/lib/pyphi/compute copying pyphi/compute/subsystem.py -> build/lib/pyphi/compute running egg_info writing pyphi.egg-info/PKG-INFO writing dependency_links to pyphi.egg-info/dependency_links.txt writing requirements to pyphi.egg-info/requires.txt writing top-level names to pyphi.egg-info/top_level.txt reading manifest file 'pyphi.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.md' writing manifest file 'pyphi.egg-info/SOURCES.txt' /usr/lib/python3.11/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyphi.data.hamming_matrices' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'pyphi.data.hamming_matrices' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'pyphi.data.hamming_matrices' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'pyphi.data.hamming_matrices' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/lib/python3.11/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyphi.data.partition_lists' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'pyphi.data.partition_lists' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'pyphi.data.partition_lists' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'pyphi.data.partition_lists' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) creating build/lib/pyphi/data creating build/lib/pyphi/data/hamming_matrices copying pyphi/data/hamming_matrices/0.npy -> build/lib/pyphi/data/hamming_matrices copying pyphi/data/hamming_matrices/1.npy -> build/lib/pyphi/data/hamming_matrices copying pyphi/data/hamming_matrices/2.npy -> build/lib/pyphi/data/hamming_matrices copying pyphi/data/hamming_matrices/3.npy -> build/lib/pyphi/data/hamming_matrices copying pyphi/data/hamming_matrices/4.npy -> build/lib/pyphi/data/hamming_matrices copying pyphi/data/hamming_matrices/5.npy -> build/lib/pyphi/data/hamming_matrices copying pyphi/data/hamming_matrices/6.npy -> build/lib/pyphi/data/hamming_matrices copying pyphi/data/hamming_matrices/7.npy -> build/lib/pyphi/data/hamming_matrices copying pyphi/data/hamming_matrices/8.npy -> build/lib/pyphi/data/hamming_matrices copying pyphi/data/hamming_matrices/9.npy -> build/lib/pyphi/data/hamming_matrices creating build/lib/pyphi/data/partition_lists copying pyphi/data/partition_lists/0.npy -> build/lib/pyphi/data/partition_lists copying pyphi/data/partition_lists/1.npy -> build/lib/pyphi/data/partition_lists copying pyphi/data/partition_lists/2.npy -> build/lib/pyphi/data/partition_lists copying pyphi/data/partition_lists/3.npy -> build/lib/pyphi/data/partition_lists copying pyphi/data/partition_lists/4.npy -> build/lib/pyphi/data/partition_lists copying pyphi/data/partition_lists/5.npy -> build/lib/pyphi/data/partition_lists copying pyphi/data/partition_lists/6.npy -> build/lib/pyphi/data/partition_lists copying pyphi/data/partition_lists/7.npy -> build/lib/pyphi/data/partition_lists copying pyphi/data/partition_lists/8.npy -> build/lib/pyphi/data/partition_lists copying pyphi/data/partition_lists/9.npy -> build/lib/pyphi/data/partition_lists installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64 creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/pyphi creating build/bdist.linux-x86_64/wheel/pyphi/data creating build/bdist.linux-x86_64/wheel/pyphi/data/partition_lists copying build/lib/pyphi/data/partition_lists/9.npy -> build/bdist.linux-x86_64/wheel/pyphi/data/partition_lists copying build/lib/pyphi/data/partition_lists/8.npy -> build/bdist.linux-x86_64/wheel/pyphi/data/partition_lists copying build/lib/pyphi/data/partition_lists/7.npy -> build/bdist.linux-x86_64/wheel/pyphi/data/partition_lists copying build/lib/pyphi/data/partition_lists/6.npy -> build/bdist.linux-x86_64/wheel/pyphi/data/partition_lists copying build/lib/pyphi/data/partition_lists/5.npy -> build/bdist.linux-x86_64/wheel/pyphi/data/partition_lists copying build/lib/pyphi/data/partition_lists/4.npy -> build/bdist.linux-x86_64/wheel/pyphi/data/partition_lists copying build/lib/pyphi/data/partition_lists/3.npy -> build/bdist.linux-x86_64/wheel/pyphi/data/partition_lists copying build/lib/pyphi/data/partition_lists/2.npy -> build/bdist.linux-x86_64/wheel/pyphi/data/partition_lists copying build/lib/pyphi/data/partition_lists/1.npy -> build/bdist.linux-x86_64/wheel/pyphi/data/partition_lists copying build/lib/pyphi/data/partition_lists/0.npy -> build/bdist.linux-x86_64/wheel/pyphi/data/partition_lists creating build/bdist.linux-x86_64/wheel/pyphi/data/hamming_matrices copying build/lib/pyphi/data/hamming_matrices/9.npy -> build/bdist.linux-x86_64/wheel/pyphi/data/hamming_matrices copying build/lib/pyphi/data/hamming_matrices/8.npy -> build/bdist.linux-x86_64/wheel/pyphi/data/hamming_matrices copying build/lib/pyphi/data/hamming_matrices/7.npy -> build/bdist.linux-x86_64/wheel/pyphi/data/hamming_matrices copying build/lib/pyphi/data/hamming_matrices/6.npy -> build/bdist.linux-x86_64/wheel/pyphi/data/hamming_matrices copying build/lib/pyphi/data/hamming_matrices/5.npy -> build/bdist.linux-x86_64/wheel/pyphi/data/hamming_matrices copying build/lib/pyphi/data/hamming_matrices/4.npy -> build/bdist.linux-x86_64/wheel/pyphi/data/hamming_matrices copying build/lib/pyphi/data/hamming_matrices/3.npy -> build/bdist.linux-x86_64/wheel/pyphi/data/hamming_matrices copying build/lib/pyphi/data/hamming_matrices/2.npy -> build/bdist.linux-x86_64/wheel/pyphi/data/hamming_matrices copying build/lib/pyphi/data/hamming_matrices/1.npy -> build/bdist.linux-x86_64/wheel/pyphi/data/hamming_matrices copying build/lib/pyphi/data/hamming_matrices/0.npy -> build/bdist.linux-x86_64/wheel/pyphi/data/hamming_matrices creating build/bdist.linux-x86_64/wheel/pyphi/compute copying build/lib/pyphi/compute/subsystem.py -> build/bdist.linux-x86_64/wheel/pyphi/compute copying build/lib/pyphi/compute/parallel.py -> build/bdist.linux-x86_64/wheel/pyphi/compute copying build/lib/pyphi/compute/network.py -> build/bdist.linux-x86_64/wheel/pyphi/compute copying build/lib/pyphi/compute/distance.py -> build/bdist.linux-x86_64/wheel/pyphi/compute copying build/lib/pyphi/compute/__init__.py -> build/bdist.linux-x86_64/wheel/pyphi/compute creating build/bdist.linux-x86_64/wheel/pyphi/models copying build/lib/pyphi/models/subsystem.py -> build/bdist.linux-x86_64/wheel/pyphi/models copying build/lib/pyphi/models/cuts.py -> build/bdist.linux-x86_64/wheel/pyphi/models copying build/lib/pyphi/models/cmp.py -> build/bdist.linux-x86_64/wheel/pyphi/models copying build/lib/pyphi/models/actual_causation.py -> build/bdist.linux-x86_64/wheel/pyphi/models copying build/lib/pyphi/models/mechanism.py -> build/bdist.linux-x86_64/wheel/pyphi/models copying build/lib/pyphi/models/fmt.py -> build/bdist.linux-x86_64/wheel/pyphi/models copying build/lib/pyphi/models/__init__.py -> build/bdist.linux-x86_64/wheel/pyphi/models copying build/lib/pyphi/registry.py -> build/bdist.linux-x86_64/wheel/pyphi copying build/lib/pyphi/labels.py -> build/bdist.linux-x86_64/wheel/pyphi copying build/lib/pyphi/db.py -> build/bdist.linux-x86_64/wheel/pyphi copying build/lib/pyphi/validate.py -> build/bdist.linux-x86_64/wheel/pyphi copying build/lib/pyphi/utils.py -> build/bdist.linux-x86_64/wheel/pyphi copying build/lib/pyphi/tpm.py -> build/bdist.linux-x86_64/wheel/pyphi copying build/lib/pyphi/timescale.py -> build/bdist.linux-x86_64/wheel/pyphi copying build/lib/pyphi/subsystem.py -> build/bdist.linux-x86_64/wheel/pyphi copying build/lib/pyphi/partition.py -> build/bdist.linux-x86_64/wheel/pyphi copying build/lib/pyphi/node.py -> build/bdist.linux-x86_64/wheel/pyphi copying build/lib/pyphi/network.py -> build/bdist.linux-x86_64/wheel/pyphi copying build/lib/pyphi/memory.py -> build/bdist.linux-x86_64/wheel/pyphi copying build/lib/pyphi/macro.py -> build/bdist.linux-x86_64/wheel/pyphi copying build/lib/pyphi/log.py -> build/bdist.linux-x86_64/wheel/pyphi copying build/lib/pyphi/jsonify.py -> build/bdist.linux-x86_64/wheel/pyphi copying build/lib/pyphi/exceptions.py -> build/bdist.linux-x86_64/wheel/pyphi copying build/lib/pyphi/examples.py -> build/bdist.linux-x86_64/wheel/pyphi copying build/lib/pyphi/distribution.py -> build/bdist.linux-x86_64/wheel/pyphi copying build/lib/pyphi/distance.py -> build/bdist.linux-x86_64/wheel/pyphi copying build/lib/pyphi/direction.py -> build/bdist.linux-x86_64/wheel/pyphi copying build/lib/pyphi/convert.py -> build/bdist.linux-x86_64/wheel/pyphi copying build/lib/pyphi/constants.py -> build/bdist.linux-x86_64/wheel/pyphi copying build/lib/pyphi/connectivity.py -> build/bdist.linux-x86_64/wheel/pyphi copying build/lib/pyphi/conf.py -> build/bdist.linux-x86_64/wheel/pyphi copying build/lib/pyphi/cache.py -> build/bdist.linux-x86_64/wheel/pyphi copying build/lib/pyphi/actual.py -> build/bdist.linux-x86_64/wheel/pyphi copying build/lib/pyphi/__init__.py -> build/bdist.linux-x86_64/wheel/pyphi copying build/lib/pyphi/__about__.py -> build/bdist.linux-x86_64/wheel/pyphi running install_egg_info Copying pyphi.egg-info to build/bdist.linux-x86_64/wheel/pyphi-1.2.1-py3.11.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/pyphi-1.2.1.dist-info/WHEEL creating '/builddir/build/BUILD/pyphi-1.2.1/.pyproject-builddir/pip-wheel-p9lgkueb/tmpwkkww_ya/pyphi-1.2.1-py3-none-any.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'pyphi/__about__.py' adding 'pyphi/__init__.py' adding 'pyphi/actual.py' adding 'pyphi/cache.py' adding 'pyphi/conf.py' adding 'pyphi/connectivity.py' adding 'pyphi/constants.py' adding 'pyphi/convert.py' adding 'pyphi/db.py' adding 'pyphi/direction.py' adding 'pyphi/distance.py' adding 'pyphi/distribution.py' adding 'pyphi/examples.py' adding 'pyphi/exceptions.py' adding 'pyphi/jsonify.py' adding 'pyphi/labels.py' adding 'pyphi/log.py' adding 'pyphi/macro.py' adding 'pyphi/memory.py' adding 'pyphi/network.py' adding 'pyphi/node.py' adding 'pyphi/partition.py' adding 'pyphi/registry.py' adding 'pyphi/subsystem.py' adding 'pyphi/timescale.py' adding 'pyphi/tpm.py' adding 'pyphi/utils.py' adding 'pyphi/validate.py' adding 'pyphi/compute/__init__.py' adding 'pyphi/compute/distance.py' adding 'pyphi/compute/network.py' adding 'pyphi/compute/parallel.py' adding 'pyphi/compute/subsystem.py' adding 'pyphi/data/hamming_matrices/0.npy' adding 'pyphi/data/hamming_matrices/1.npy' adding 'pyphi/data/hamming_matrices/2.npy' adding 'pyphi/data/hamming_matrices/3.npy' adding 'pyphi/data/hamming_matrices/4.npy' adding 'pyphi/data/hamming_matrices/5.npy' adding 'pyphi/data/hamming_matrices/6.npy' adding 'pyphi/data/hamming_matrices/7.npy' adding 'pyphi/data/hamming_matrices/8.npy' adding 'pyphi/data/hamming_matrices/9.npy' adding 'pyphi/data/partition_lists/0.npy' adding 'pyphi/data/partition_lists/1.npy' adding 'pyphi/data/partition_lists/2.npy' adding 'pyphi/data/partition_lists/3.npy' adding 'pyphi/data/partition_lists/4.npy' adding 'pyphi/data/partition_lists/5.npy' adding 'pyphi/data/partition_lists/6.npy' adding 'pyphi/data/partition_lists/7.npy' adding 'pyphi/data/partition_lists/8.npy' adding 'pyphi/data/partition_lists/9.npy' adding 'pyphi/models/__init__.py' adding 'pyphi/models/actual_causation.py' adding 'pyphi/models/cmp.py' adding 'pyphi/models/cuts.py' adding 'pyphi/models/fmt.py' adding 'pyphi/models/mechanism.py' adding 'pyphi/models/subsystem.py' adding 'pyphi-1.2.1.dist-info/LICENSE.md' adding 'pyphi-1.2.1.dist-info/METADATA' adding 'pyphi-1.2.1.dist-info/WHEEL' adding 'pyphi-1.2.1.dist-info/top_level.txt' adding 'pyphi-1.2.1.dist-info/RECORD' removing build/bdist.linux-x86_64/wheel Building wheel for pyphi (pyproject.toml): finished with status 'done' Created wheel for pyphi: filename=pyphi-1.2.1-py3-none-any.whl size=618929 sha256=6976870b0facf953d868c4e57f4d5f8a00d83b95e707500197c78a82771c5a6c Stored in directory: /builddir/.cache/pip/wheels/70/eb/71/e4387c68bac1c6e3b9aa93b3527f93ee1d7feda9d35e1d177b Successfully built pyphi + make -C docs SPHINXBUILD=sphinx-build-3 html make: Entering directory '/builddir/build/BUILD/pyphi-1.2.1/docs' sphinx-build-3 -b html -d _build/doctrees . _build/html Running Sphinx v5.3.0 Welcome to PyPhi! If you use PyPhi in your research, please cite the paper: Mayner WGP, Marshall W, Albantakis L, Findlay G, Marchman R, Tononi G. (2018). PyPhi: A toolbox for integrated information theory. PLOS Computational Biology 14(7): e1006343. https://doi.org/10.1371/journal.pcbi.1006343 Documentation is available online (or with the built-in `help()` function): https://pyphi.readthedocs.io To report issues, please use the issue tracker on the GitHub repository: https://github.com/wmayner/pyphi For general discussion, you are welcome to join the pyphi-users group: https://groups.google.com/forum/#!forum/pyphi-users To suppress this message, either: - Set `WELCOME_OFF: true` in your `pyphi_config.yml` file, or - Set the environment variable PYPHI_WELCOME_OFF to any value in your shell: export PYPHI_WELCOME_OFF='yes' making output directory... done building [mo]: targets for 0 po files that are out of date building [html]: targets for 45 source files that are out of date updating environment: [new config] 45 added, 0 changed, 0 removed reading sources... [ 2%] api/actual reading sources... [ 4%] api/cache reading sources... [ 6%] api/compute reading sources... [ 8%] api/compute.distance reading sources... [ 11%] api/compute.network reading sources... [ 13%] api/compute.parallel reading sources... [ 15%] api/compute.subsystem reading sources... [ 17%] api/conf reading sources... [ 20%] api/connectivity reading sources... [ 22%] api/constants reading sources... [ 24%] api/convert reading sources... [ 26%] api/direction reading sources... [ 28%] api/distance reading sources... [ 31%] api/distribution reading sources... [ 33%] api/examples reading sources... [ 35%] api/exceptions reading sources... [ 37%] api/jsonify reading sources... [ 40%] api/macro reading sources... [ 42%] api/models reading sources... [ 44%] api/models.actual_causation reading sources... [ 46%] api/models.cuts reading sources... [ 48%] api/models.mechanism reading sources... [ 51%] api/models.subsystem reading sources... [ 53%] api/network reading sources... [ 55%] api/node reading sources... [ 57%] api/partition reading sources... [ 60%] api/subsystem reading sources... [ 62%] api/timescale reading sources... [ 64%] api/tpm reading sources... [ 66%] api/utils reading sources... [ 68%] api/validate reading sources... [ 71%] caching reading sources... [ 73%] configuration reading sources... [ 75%] conventions reading sources... [ 77%] examples/2014paper reading sources... [ 80%] examples/actual_causation reading sources... [ 82%] examples/conditional_independence reading sources... [ 84%] examples/emergence reading sources... [ 86%] examples/index reading sources... [ 88%] examples/magic_cut reading sources... [ 91%] examples/residue reading sources... [ 93%] examples/xor reading sources... [ 95%] index reading sources... [ 97%] installation reading sources... [100%] macos_installation looking for now-outdated files... none found /builddir/build/BUILD/pyphi-1.2.1/pyphi/actual.py:docstring of pyphi.actual.Transition:67: WARNING: duplicate object description of pyphi.actual.Transition.cause_system, other instance in api/actual, use :noindex: for one of them /builddir/build/BUILD/pyphi-1.2.1/pyphi/macro.py:docstring of pyphi.macro.MacroNetwork.emergence:1: WARNING: duplicate object description of pyphi.macro.MacroNetwork.emergence, other instance in api/macro, use :noindex: for one of them /builddir/build/BUILD/pyphi-1.2.1/pyphi/models/cuts.py:docstring of pyphi.models.cuts.Cut.from_nodes:1: WARNING: duplicate object description of pyphi.models.cuts.Cut.from_nodes, other instance in api/models.cuts, use :noindex: for one of them /builddir/build/BUILD/pyphi-1.2.1/pyphi/models/cuts.py:docstring of pyphi.models.cuts.Cut.to_nodes:1: WARNING: duplicate object description of pyphi.models.cuts.Cut.to_nodes, other instance in api/models.cuts, use :noindex: for one of them pickling environment... done checking consistency... done preparing documents... done writing output... [ 2%] api/actual writing output... [ 4%] api/cache writing output... [ 6%] api/compute writing output... [ 8%] api/compute.distance writing output... [ 11%] api/compute.network writing output... [ 13%] api/compute.parallel writing output... [ 15%] api/compute.subsystem writing output... [ 17%] api/conf writing output... [ 20%] api/connectivity writing output... [ 22%] api/constants writing output... [ 24%] api/convert writing output... [ 26%] api/direction writing output... [ 28%] api/distance writing output... [ 31%] api/distribution writing output... [ 33%] api/examples writing output... [ 35%] api/exceptions writing output... [ 37%] api/jsonify writing output... [ 40%] api/macro writing output... [ 42%] api/models writing output... [ 44%] api/models.actual_causation writing output... [ 46%] api/models.cuts writing output... [ 48%] api/models.mechanism writing output... [ 51%] api/models.subsystem writing output... [ 53%] api/network writing output... [ 55%] api/node writing output... [ 57%] api/partition writing output... [ 60%] api/subsystem writing output... [ 62%] api/timescale writing output... [ 64%] api/tpm writing output... [ 66%] api/utils writing output... [ 68%] api/validate writing output... [ 71%] caching writing output... [ 73%] configuration writing output... [ 75%] conventions writing output... [ 77%] examples/2014paper writing output... [ 80%] examples/actual_causation writing output... [ 82%] examples/conditional_independence writing output... [ 84%] examples/emergence writing output... [ 86%] examples/index writing output... [ 88%] examples/magic_cut writing output... [ 91%] examples/residue writing output... [ 93%] examples/xor writing output... [ 95%] index writing output... [ 97%] installation writing output... [100%] macos_installation generating indices... /builddir/build/BUILD/pyphi-1.2.1/pyphi/actual.py:docstring of pyphi.actual.true_events:1: WARNING: more than one target found for cross-reference 'AcSystemIrreducibilityAnalysis': pyphi.models.AcSystemIrreducibilityAnalysis, pyphi.models.actual_causation.AcSystemIrreducibilityAnalysis /builddir/build/BUILD/pyphi-1.2.1/pyphi/actual.py:docstring of pyphi.actual.extrinsic_events:1: WARNING: more than one target found for cross-reference 'AcSystemIrreducibilityAnalysis': pyphi.models.AcSystemIrreducibilityAnalysis, pyphi.models.actual_causation.AcSystemIrreducibilityAnalysis /builddir/build/BUILD/pyphi-1.2.1/pyphi/subsystem.py:docstring of pyphi.subsystem.Subsystem:1: WARNING: more than one target found for cross-reference 'Cut': pyphi.models.Cut, pyphi.models.cuts.Cut genindex py-modindex done writing additional pages... search done copying images... [100%] _static/connectivity-matrix-example-network.png copying static files... done copying extra files... done dumping search index in English (code: en)... done dumping object inventory... done build succeeded, 7 warnings. The HTML pages are in _build/html. Build finished. The HTML pages are in _build/html. make: Leaving directory '/builddir/build/BUILD/pyphi-1.2.1/docs' + rm docs/_build/html/.doctrees docs/_build/html/.buildinfo -vf removed 'docs/_build/html/.buildinfo' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.VFFxPa + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/python-pyphi-1.2.1-6.fc39.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/python-pyphi-1.2.1-6.fc39.x86_64 ++ dirname /builddir/build/BUILDROOT/python-pyphi-1.2.1-6.fc39.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/python-pyphi-1.2.1-6.fc39.x86_64 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd pyphi-1.2.1 ++ ls /builddir/build/BUILD/pyphi-1.2.1/pyproject-wheeldir/pyphi-1.2.1-py3-none-any.whl ++ xargs basename --multiple ++ sed -E 's/([^-]+)-([^-]+)-.+\.whl/\1==\2/' + specifier=pyphi==1.2.1 + TMPDIR=/builddir/build/BUILD/pyphi-1.2.1/.pyproject-builddir + /usr/bin/python3 -m pip install --root /builddir/build/BUILDROOT/python-pyphi-1.2.1-6.fc39.x86_64 --prefix /usr --no-deps --disable-pip-version-check --progress-bar off --verbose --ignore-installed --no-warn-script-location --no-index --no-cache-dir --find-links /builddir/build/BUILD/pyphi-1.2.1/pyproject-wheeldir pyphi==1.2.1 Using pip 23.0.1 from /usr/lib/python3.11/site-packages/pip (python 3.11) Looking in links: /builddir/build/BUILD/pyphi-1.2.1/pyproject-wheeldir Processing ./pyproject-wheeldir/pyphi-1.2.1-py3-none-any.whl Installing collected packages: pyphi Successfully installed pyphi-1.2.1 + '[' -d /builddir/build/BUILDROOT/python-pyphi-1.2.1-6.fc39.x86_64/usr/bin ']' + rm -f /builddir/build/BUILD/python-pyphi-1.2.1-6.fc39.x86_64-pyproject-ghost-distinfo + site_dirs=() + '[' -d /builddir/build/BUILDROOT/python-pyphi-1.2.1-6.fc39.x86_64/usr/lib/python3.11/site-packages ']' + site_dirs+=("/usr/lib/python3.11/site-packages") + '[' /builddir/build/BUILDROOT/python-pyphi-1.2.1-6.fc39.x86_64/usr/lib64/python3.11/site-packages '!=' /builddir/build/BUILDROOT/python-pyphi-1.2.1-6.fc39.x86_64/usr/lib/python3.11/site-packages ']' + '[' -d /builddir/build/BUILDROOT/python-pyphi-1.2.1-6.fc39.x86_64/usr/lib64/python3.11/site-packages ']' + for site_dir in ${site_dirs[@]} + for distinfo in /builddir/build/BUILDROOT/python-pyphi-1.2.1-6.fc39.x86_64$site_dir/*.dist-info + echo '%ghost /usr/lib/python3.11/site-packages/pyphi-1.2.1.dist-info' + sed -i s/pip/rpm/ /builddir/build/BUILDROOT/python-pyphi-1.2.1-6.fc39.x86_64/usr/lib/python3.11/site-packages/pyphi-1.2.1.dist-info/INSTALLER + PYTHONPATH=/usr/lib/rpm/redhat + /usr/bin/python3 -B /usr/lib/rpm/redhat/pyproject_preprocess_record.py --buildroot /builddir/build/BUILDROOT/python-pyphi-1.2.1-6.fc39.x86_64 --record /builddir/build/BUILDROOT/python-pyphi-1.2.1-6.fc39.x86_64/usr/lib/python3.11/site-packages/pyphi-1.2.1.dist-info/RECORD --output /builddir/build/BUILD/python-pyphi-1.2.1-6.fc39.x86_64-pyproject-record + rm -fv /builddir/build/BUILDROOT/python-pyphi-1.2.1-6.fc39.x86_64/usr/lib/python3.11/site-packages/pyphi-1.2.1.dist-info/RECORD removed '/builddir/build/BUILDROOT/python-pyphi-1.2.1-6.fc39.x86_64/usr/lib/python3.11/site-packages/pyphi-1.2.1.dist-info/RECORD' + rm -fv /builddir/build/BUILDROOT/python-pyphi-1.2.1-6.fc39.x86_64/usr/lib/python3.11/site-packages/pyphi-1.2.1.dist-info/REQUESTED removed '/builddir/build/BUILDROOT/python-pyphi-1.2.1-6.fc39.x86_64/usr/lib/python3.11/site-packages/pyphi-1.2.1.dist-info/REQUESTED' ++ wc -l /builddir/build/BUILD/python-pyphi-1.2.1-6.fc39.x86_64-pyproject-ghost-distinfo ++ cut -f1 '-d ' + lines=1 + '[' 1 -ne 1 ']' + /usr/bin/python3 /usr/lib/rpm/redhat/pyproject_save_files.py --output-files /builddir/build/BUILD/python-pyphi-1.2.1-6.fc39.x86_64-pyproject-files --output-modules /builddir/build/BUILD/python-pyphi-1.2.1-6.fc39.x86_64-pyproject-modules --buildroot /builddir/build/BUILDROOT/python-pyphi-1.2.1-6.fc39.x86_64 --sitelib /usr/lib/python3.11/site-packages --sitearch /usr/lib64/python3.11/site-packages --python-version 3.11 --pyproject-record /builddir/build/BUILD/python-pyphi-1.2.1-6.fc39.x86_64-pyproject-record --prefix /usr pyphi + /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 1.2.1-6.fc39 --unique-debug-suffix -1.2.1-6.fc39.x86_64 --unique-debug-src-base python-pyphi-1.2.1-6.fc39.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/pyphi-1.2.1 find: 'debug': No such file or directory + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2 Bytecompiling .py files below /builddir/build/BUILDROOT/python-pyphi-1.2.1-6.fc39.x86_64/usr/lib/python3.11 using python3.11 + /usr/lib/rpm/redhat/brp-python-hardlink Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.yvBzle + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd pyphi-1.2.1 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + PATH=/builddir/build/BUILDROOT/python-pyphi-1.2.1-6.fc39.x86_64/usr/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin + PYTHONPATH=/builddir/build/BUILDROOT/python-pyphi-1.2.1-6.fc39.x86_64/usr/lib64/python3.11/site-packages:/builddir/build/BUILDROOT/python-pyphi-1.2.1-6.fc39.x86_64/usr/lib/python3.11/site-packages + PYTHONDONTWRITEBYTECODE=1 + PYTEST_ADDOPTS=' --ignore=/builddir/build/BUILD/pyphi-1.2.1/.pyproject-builddir' + PYTEST_XDIST_AUTO_NUM_WORKERS=2 + /usr/bin/pytest ============================= test session starts ============================== platform linux -- Python 3.11.2, pytest-7.2.1, pluggy-1.0.0 -- /usr/bin/python3 cachedir: .pytest_cache rootdir: /builddir/build/BUILD/pyphi-1.2.1, configfile: pytest.ini plugins: lazy-fixture-0.6.3 collecting ... collected 578 items docs/conventions.rst::conventions.rst PASSED [ 0%] docs/examples/2014paper.rst::2014paper.rst PASSED [ 0%] docs/examples/actual_causation.rst::actual_causation.rst PASSED [ 0%] docs/examples/conditional_independence.rst::conditional_independence.rst PASSED [ 0%] docs/examples/emergence.rst::emergence.rst PASSED [ 0%] docs/examples/index.rst::index.rst PASSED [ 1%] docs/examples/magic_cut.rst::magic_cut.rst PASSED [ 1%] docs/examples/residue.rst::residue.rst PASSED [ 1%] docs/examples/xor.rst::xor.rst PASSED [ 1%] pyphi/conf.py::pyphi.conf PASSED [ 1%] pyphi/conf.py::pyphi.conf.Config.override PASSED [ 1%] pyphi/convert.py::pyphi.convert.be2le_state_by_state PASSED [ 2%] pyphi/convert.py::pyphi.convert.be_index2state PASSED [ 2%] pyphi/convert.py::pyphi.convert.le_index2state PASSED [ 2%] pyphi/convert.py::pyphi.convert.reverse_bits PASSED [ 2%] pyphi/convert.py::pyphi.convert.state2be_index PASSED [ 2%] pyphi/convert.py::pyphi.convert.state2le_index PASSED [ 2%] pyphi/convert.py::pyphi.convert.state_by_node2state_by_state PASSED [ 3%] pyphi/convert.py::pyphi.convert.state_by_state2state_by_node PASSED [ 3%] pyphi/distance.py::pyphi.distance.MeasureRegistry SKIPPED (all tests skipped by +SKIP option) [ 3%] pyphi/distance.py::pyphi.distance._hamming_matrix PASSED [ 3%] pyphi/distribution.py::pyphi.distribution.repertoire_shape PASSED [ 3%] pyphi/labels.py::pyphi.labels.NodeLabels PASSED [ 3%] pyphi/macro.py::pyphi.macro.Blackbox.reindex PASSED [ 4%] pyphi/macro.py::pyphi.macro.CoarseGrain.macro_state PASSED [ 4%] pyphi/macro.py::pyphi.macro.CoarseGrain.reindex PASSED [ 4%] pyphi/macro.py::pyphi.macro._partitions_list PASSED [ 4%] pyphi/partition.py::pyphi.partition.PartitionRegistry SKIPPED (all tests skipped by +SKIP option) [ 4%] pyphi/partition.py::pyphi.partition.bipartition PASSED [ 5%] pyphi/partition.py::pyphi.partition.bipartition_indices PASSED [ 5%] pyphi/partition.py::pyphi.partition.directed_bipartition PASSED [ 5%] pyphi/partition.py::pyphi.partition.directed_bipartition_indices PASSED [ 5%] pyphi/partition.py::pyphi.partition.directed_bipartition_of_one PASSED [ 5%] pyphi/partition.py::pyphi.partition.directed_tripartition PASSED [ 5%] pyphi/partition.py::pyphi.partition.directed_tripartition_indices PASSED [ 6%] pyphi/partition.py::pyphi.partition.k_partitions PASSED [ 6%] pyphi/partition.py::pyphi.partition.mip_bipartitions PASSED [ 6%] pyphi/partition.py::pyphi.partition.partitions PASSED [ 6%] pyphi/utils.py::pyphi.utils.comb_indices PASSED [ 6%] pyphi/utils.py::pyphi.utils.powerset PASSED [ 6%] pyphi/models/cuts.py::pyphi.models.cuts.Cut.cut_matrix PASSED [ 7%] pyphi/models/fmt.py::pyphi.models.fmt.box PASSED [ 7%] pyphi/models/fmt.py::pyphi.models.fmt.indent PASSED [ 7%] pyphi/models/fmt.py::pyphi.models.fmt.margin PASSED [ 7%] pyphi/models/fmt.py::pyphi.models.fmt.side_by_side PASSED [ 7%] test/test_actual.py::test_background_conditions[background_all_off-EFFECT-mechanism0-purview0-1] PASSED [ 7%] test/test_actual.py::test_background_conditions[background_all_off-CAUSE-mechanism1-purview1-1] PASSED [ 8%] test/test_actual.py::test_background_conditions[background_all_on-EFFECT-mechanism2-purview2-0] PASSED [ 8%] test/test_actual.py::test_background_conditions[background_all_on-CAUSE-mechanism3-purview3-0] PASSED [ 8%] test/test_actual.py::test_background_noised PASSED [ 8%] test/test_actual.py::test_background_3_node[before_state0-purview0-0.0] PASSED [ 8%] test/test_actual.py::test_background_3_node[before_state1-purview1-1.0] PASSED [ 8%] test/test_actual.py::test_potential_purviews PASSED [ 9%] test/test_actual.py::test_transition_initialization PASSED [ 9%] test/test_actual.py::test_purview_state PASSED [ 9%] test/test_actual.py::test_mechanism_state PASSED [ 9%] test/test_actual.py::test_mechanism_indices PASSED [ 9%] test/test_actual.py::test_purview_indices PASSED [ 10%] test/test_actual.py::test_system_dict PASSED [ 10%] test/test_actual.py::test_transition_len PASSED [ 10%] test/test_actual.py::test_transition_bool PASSED [ 10%] test/test_actual.py::test_transition_equal PASSED [ 10%] test/test_actual.py::test_transition_apply_cut PASSED [ 10%] test/test_actual.py::test_to_json PASSED [ 11%] test/test_actual.py::test_acria_ordering PASSED [ 11%] test/test_actual.py::test_acria_hash PASSED [ 11%] test/test_actual.py::test_acria_phi_alias PASSED [ 11%] test/test_actual.py::test_causal_link_ordering PASSED [ 11%] test/test_actual.py::test_account_irreducible_causes_and_effects PASSED [ 11%] test/test_actual.py::test_account_repr_and_str PASSED [ 12%] test/test_actual.py::test_account_addition PASSED [ 12%] test/test_actual.py::test_ac_sia_repr_and_str PASSED [ 12%] test/test_actual.py::test_ac_sia_ordering PASSED [ 12%] test/test_actual.py::test_repertoires[CAUSE-mechanism0-purview0-repertoire0] PASSED [ 12%] test/test_actual.py::test_repertoires[CAUSE-mechanism1-purview1-repertoire1] PASSED [ 12%] test/test_actual.py::test_repertoires[CAUSE-mechanism2-purview2-repertoire2] PASSED [ 13%] test/test_actual.py::test_repertoires[EFFECT-mechanism3-purview3-repertoire3] PASSED [ 13%] test/test_actual.py::test_repertoires[EFFECT-mechanism4-purview4-repertoire4] PASSED [ 13%] test/test_actual.py::test_repertoires[EFFECT-mechanism5-purview5-repertoire5] PASSED [ 13%] test/test_actual.py::test_invalid_repertoires PASSED [ 13%] test/test_actual.py::test_unconstrained_repertoires PASSED [ 14%] test/test_actual.py::test_probability[CAUSE-mechanism0-purview0-0.66666667] PASSED [ 14%] test/test_actual.py::test_probability[CAUSE-mechanism1-purview1-0.66666667] PASSED [ 14%] test/test_actual.py::test_probability[CAUSE-mechanism2-purview2-0.3333333] PASSED [ 14%] test/test_actual.py::test_probability[EFFECT-mechanism3-purview3-1] PASSED [ 14%] test/test_actual.py::test_probability[EFFECT-mechanism4-purview4-1] PASSED [ 14%] test/test_actual.py::test_probability[EFFECT-mechanism5-purview5-1] PASSED [ 15%] test/test_actual.py::test_unconstrained_probability PASSED [ 15%] test/test_actual.py::test_cause_ratio[mechanism0-purview0-0.41504] PASSED [ 15%] test/test_actual.py::test_cause_ratio[mechanism1-purview1-0.41504] PASSED [ 15%] test/test_actual.py::test_cause_ratio[mechanism2-purview2-0.41504] PASSED [ 15%] test/test_actual.py::test_effect_ratio[mechanism0-purview0-0.41504] PASSED [ 15%] test/test_actual.py::test_effect_ratio[mechanism1-purview1-0.41504] PASSED [ 16%] test/test_actual.py::test_effect_ratio[mechanism2-purview2-0.41504] PASSED [ 16%] test/test_actual.py::test_ac_ex1_transition PASSED [ 16%] test/test_actual.py::test_actual_cut_indices PASSED [ 16%] test/test_actual.py::test_actual_apply_cut PASSED [ 16%] test/test_actual.py::test_actual_cut_matrix PASSED [ 16%] test/test_actual.py::test_get_actual_cuts[BIDIRECTIONAL-answer0] PASSED [ 17%] test/test_actual.py::test_get_actual_cuts[CAUSE-answer1] PASSED [ 17%] test/test_actual.py::test_get_actual_cuts[EFFECT-answer2] PASSED [ 17%] test/test_actual.py::test_sia PASSED [ 17%] test/test_actual.py::test_null_ac_sia PASSED [ 17%] test/test_actual.py::test_prevention PASSED [ 17%] test/test_actual.py::test_causal_nexus PASSED [ 18%] test/test_actual.py::test_true_events PASSED [ 18%] test/test_actual.py::test_true_ces PASSED [ 18%] test/test_actual.py::test_extrinsic_events PASSED [ 18%] test/test_big_phi.py::test_sia_cache_key_includes_config_dependencies PASSED [ 18%] test/test_big_phi.py::test_clear_subsystem_caches_after_computing_sia_config_option PASSED [ 19%] test/test_big_phi.py::test_conceptual_info PASSED [ 19%] test/test_big_phi.py::test_sia_empty_subsystem PASSED [ 19%] test/test_big_phi.py::test_sia_disconnected_network PASSED [ 19%] test/test_big_phi.py::test_sia_wrappers PASSED [ 19%] test/test_big_phi.py::test_sia_single_micro_node_selfloops_have_phi PASSED [ 19%] test/test_big_phi.py::test_sia_single_micro_node_selfloops_dont_have_phi PASSED [ 20%] test/test_big_phi.py::test_sia_single_micro_nodes_without_selfloops_dont_have_phi PASSED [ 20%] test/test_big_phi.py::test_find_sia_sequential_standard_example PASSED [ 20%] test/test_big_phi.py::test_find_sia_parallel_standard_example PASSED [ 20%] test/test_big_phi.py::test_find_sia_sequential_noised_example PASSED [ 20%] test/test_big_phi.py::test_find_sia_parallel_noised_example PASSED [ 20%] test/test_big_phi.py::test_find_sia_parallel_micro PASSED [ 21%] test/test_big_phi.py::test_find_sia_sequential_micro PASSED [ 21%] test/test_big_phi.py::test_possible_complexes PASSED [ 21%] test/test_big_phi.py::test_complexes_standard PASSED [ 21%] test/test_big_phi.py::test_all_complexes_standard PASSED [ 21%] test/test_big_phi.py::test_all_complexes_parallelization PASSED [ 21%] test/test_big_phi.py::test_sia_complete_graph_standard_example PASSED [ 22%] test/test_big_phi.py::test_sia_complete_graph_s_noised PASSED [ 22%] test/test_big_phi.py::test_sia_complete_graph_big_subsys_all SKIPPED (need --slow option to run) [ 22%] test/test_big_phi.py::test_sia_complete_graph_rule152_s SKIPPED (need --slow option to run) [ 22%] test/test_big_phi.py::test_sia_big_network SKIPPED (need --slow option to run) [ 22%] test/test_big_phi.py::test_sia_big_network_0_thru_3 PASSED [ 23%] test/test_big_phi.py::test_sia_rule152 SKIPPED (need --slow option to run) [ 23%] test/test_big_phi.py::test_rule152_complexes_no_caching SKIPPED (need --veryslow option to run) [ 23%] test/test_big_phi.py::test_sia_macro PASSED [ 23%] test/test_big_phi.py::test_sia_bipartitions PASSED [ 23%] test/test_big_phi.py::test_system_cut_styles PASSED [ 23%] test/test_cache.py::test_cache PASSED [ 24%] test/test_cache.py::test_cache_decorator PASSED [ 24%] test/test_cache.py::test_cache_key_generation PASSED [ 24%] test/test_cache.py::test_cache_repertoires_config_option PASSED [ 24%] test/test_cache.py::test_redis_singleton_connection SKIPPED (requires a running Redis server) [ 24%] test/test_cache.py::test_redis_cache_info SKIPPED (requires a running Redis server) [ 24%] test/test_cache.py::test_use_redis_mice_cache SKIPPED (requires a running Redis server) [ 25%] test/test_cache.py::test_redis_cache_sharing_between_processes SKIPPED (requires a running Redis server) [ 25%] test/test_cache.py::test_use_dict_mice_cache PASSED [ 25%] test/test_cache.py::test_mice_cache_keys PASSED [ 25%] test/test_cache.py::test_mice_cache[True] SKIPPED (requires a running Redis server) [ 25%] test/test_cache.py::test_mice_cache[False] PASSED [ 25%] test/test_cache.py::test_do_not_cache_phi_zero_mice PASSED [ 26%] test/test_cache.py::test_only_cache_uncut_subsystem_mices[True] SKIPPED (requires a running Redis server) [ 26%] test/test_cache.py::test_only_cache_uncut_subsystem_mices[False] PASSED [ 26%] test/test_cache.py::test_split_mechanism_mice_is_not_reusable[True] SKIPPED (requires a running Redis server) [ 26%] test/test_cache.py::test_split_mechanism_mice_is_not_reusable[False] PASSED [ 26%] test/test_cache.py::test_cut_relevant_connections_mice_is_not_reusable[True] SKIPPED (requires a running Redis server) [ 26%] test/test_cache.py::test_cut_relevant_connections_mice_is_not_reusable[False] PASSED [ 27%] test/test_cache.py::test_inherited_mice_cache_keeps_unaffected_mice[True] SKIPPED (requires a running Redis server) [ 27%] test/test_cache.py::test_inherited_mice_cache_keeps_unaffected_mice[False] PASSED [ 27%] test/test_cache.py::test_inherited_cache_must_come_from_uncut_subsystem[True] SKIPPED (requires a running Redis server) [ 27%] test/test_cache.py::test_inherited_cache_must_come_from_uncut_subsystem[False] PASSED [ 27%] test/test_cache.py::test_mice_cache_respects_cache_memory_limits PASSED [ 28%] test/test_cache.py::test_purview_cache PASSED [ 28%] test/test_cache.py::test_only_cache_purviews_if_configured PASSED [ 28%] test/test_ces.py::test_ces_distance_uses_simple_vs_emd PASSED [ 28%] test/test_ces.py::test_ces_distance_switches_to_small_phi_difference PASSED [ 28%] test/test_ces.py::test_parallel_and_sequential_ces_are_equal PASSED [ 28%] test/test_ces.py::test_ces_concepts_share_the_same_subsystem[False] PASSED [ 29%] test/test_ces.py::test_ces_concepts_share_the_same_subsystem[True] PASSED [ 29%] test/test_concept_style_cuts.py::test_cut_indices PASSED [ 29%] test/test_concept_style_cuts.py::test_apply_cut PASSED [ 29%] test/test_concept_style_cuts.py::test_cut_matrix PASSED [ 29%] test/test_concept_style_cuts.py::test_splits_mechanism PASSED [ 29%] test/test_concept_style_cuts.py::test_all_cut_mechanisms PASSED [ 30%] test/test_concept_style_cuts.py::test_concept_style_cuts PASSED [ 30%] test/test_concept_style_cuts.py::test_kcut_equality PASSED [ 30%] test/test_concept_style_cuts.py::test_system_accessors PASSED [ 30%] test/test_concept_style_cuts.py::test_sia_concept_style_ordering PASSED [ 30%] test/test_concept_style_cuts.py::test_sia_concept_style PASSED [ 30%] test/test_concept_style_cuts.py::test_unpickle PASSED [ 31%] test/test_concept_style_cuts.py::test_concept_style_phi PASSED [ 31%] test/test_config.py::test_iter PASSED [ 31%] test/test_config.py::test_load_dict PASSED [ 31%] test/test_config.py::test_snapshot PASSED [ 31%] test/test_config.py::test_load_file PASSED [ 32%] test/test_config.py::test_str PASSED [ 32%] test/test_config.py::test_override PASSED [ 32%] test/test_config.py::test_override_cleans_up_after_exception PASSED [ 32%] test/test_config.py::test_override_is_a_context_manager PASSED [ 32%] test/test_config.py::test_option_descriptor PASSED [ 32%] test/test_config.py::test_defaults PASSED [ 33%] test/test_config.py::test_only_set_public__attributes_that_are_options PASSED [ 33%] test/test_config.py::test_can_set_private_attributes PASSED [ 33%] test/test_config.py::test_on_change PASSED [ 33%] test/test_config.py::test_reconfigure_logging_on_change PASSED [ 33%] test/test_config.py::test_reconfigure_precision_on_change PASSED [ 33%] test/test_config.py::test_reconfigure_joblib_on_change PASSED [ 34%] test/test_config.py::test_config_validation[SYSTEM_CUTS-valid0-invalid0] PASSED [ 34%] test/test_config.py::test_config_validation[REPR_VERBOSITY-valid1-invalid1] PASSED [ 34%] test/test_connectivity.py::test_get_inputs_from_cm PASSED [ 34%] test/test_connectivity.py::test_get_outputs_from_cm PASSED [ 34%] test/test_connectivity.py::test_causally_significant_nodes PASSED [ 34%] test/test_connectivity.py::test_relevant_connections PASSED [ 35%] test/test_connectivity.py::test_block_cm PASSED [ 35%] test/test_connectivity.py::test_block_reducible PASSED [ 35%] test/test_connectivity.py::test_is_strong PASSED [ 35%] test/test_connectivity.py::test_is_full PASSED [ 35%] test/test_connectivity.py::test_apply_boundary_conditions PASSED [ 35%] test/test_convert.py::test_le_index2state PASSED [ 36%] test/test_convert.py::test_be_index2state PASSED [ 36%] test/test_convert.py::test_to_multidimensional PASSED [ 36%] test/test_convert.py::test_to_2dimensional PASSED [ 36%] test/test_convert.py::test_state_by_state2state_by_node PASSED [ 36%] test/test_convert.py::test_state_by_node2state_by_state PASSED [ 37%] test/test_convert.py::test_nondet_state_by_node2state_by_state PASSED [ 37%] test/test_convert.py::test_nondet_state_by_state2state_by_node PASSED [ 37%] test/test_convert.py::test_2_d_state_by_node2state_by_state PASSED [ 37%] test/test_convert.py::test_n_d_state_by_node2state_by_state PASSED [ 37%] test/test_direction.py::test_direction_order PASSED [ 37%] test/test_direction.py::test_direction_json[CAUSE-json_dict0] PASSED [ 38%] test/test_direction.py::test_direction_json[EFFECT-json_dict1] PASSED [ 38%] test/test_direction.py::test_direction_json[BIDIRECTIONAL-json_dict2] PASSED [ 38%] test/test_direction.py::test_direction_str PASSED [ 38%] test/test_distance.py::test_hamming_matrix PASSED [ 38%] test/test_distance.py::test_large_hamming_matrix PASSED [ 38%] test/test_distance.py::test_emd_same_distributions PASSED [ 39%] test/test_distance.py::test_emd_validates_distribution_shapes PASSED [ 39%] test/test_distance.py::test_l1_distance PASSED [ 39%] test/test_distance.py::test_entropy_difference PASSED [ 39%] test/test_distance.py::test_kld PASSED [ 39%] test/test_distance.py::test_psq2 PASSED [ 39%] test/test_distance.py::test_mp2q PASSED [ 40%] test/test_distance.py::test_klm PASSED [ 40%] test/test_distance.py::test_default_measures PASSED [ 40%] test/test_distance.py::test_default_asymmetric_measures PASSED [ 40%] test/test_distance.py::test_system_repertoire_distance_must_be_symmetric PASSED [ 40%] test/test_distance.py::test_suppress_np_warnings PASSED [ 41%] test/test_distribution.py::test_normalize PASSED [ 41%] test/test_distribution.py::test_uniform_distribution PASSED [ 41%] test/test_distribution.py::test_purview_max_entropy_distribution PASSED [ 41%] test/test_distribution.py::test_marginal_zero PASSED [ 41%] test/test_distribution.py::test_marginal PASSED [ 41%] test/test_distribution.py::test_independent PASSED [ 42%] test/test_distribution.py::test_purview_size PASSED [ 42%] test/test_distribution.py::test_purview PASSED [ 42%] test/test_distribution.py::test_repertoire_shape PASSED [ 42%] test/test_distribution.py::test_flatten PASSED [ 42%] test/test_json.py::test_jsonify_native PASSED [ 42%] test/test_json.py::test_jsonify_numpy PASSED [ 43%] 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48%] test/test_macro.py::test_pack_attrs PASSED [ 49%] test/test_macro.py::test_apply_attrs PASSED [ 49%] test/test_macro_blackbox.py::test_basic_nor_or SKIPPED (need --veryslow option to run) [ 49%] test/test_macro_blackbox.py::test_xor_propogation_delay SKIPPED (need --veryslow option to run) [ 49%] test/test_macro_blackbox.py::test_soup XFAIL [ 49%] test/test_macro_blackbox.py::test_coarsegrain_spatial_degenerate SKIPPED (need --slow option to run) [ 50%] test/test_macro_blackbox.py::test_degenerate PASSED [ 50%] test/test_macro_blackbox.py::test_basic_propagation_delay PASSED [ 50%] test/test_macro_subsystem.py::test_cut_indices PASSED [ 50%] test/test_macro_subsystem.py::test_cut_mechanisms PASSED [ 50%] test/test_macro_subsystem.py::test_cut_node_labels_are_for_micro_elements PASSED [ 50%] test/test_macro_subsystem.py::test_concept_str_uses_macro_node_labels PASSED [ 51%] test/test_macro_subsystem.py::test_node_indices_can_be_none PASSED [ 51%] test/test_macro_subsystem.py::test_pass_node_indices_as_a_range PASSED [ 51%] test/test_macro_subsystem.py::test_node_labels PASSED [ 51%] test/test_macro_subsystem.py::test_macro_subsystem PASSED [ 51%] test/test_macro_subsystem.py::test_macro_cut_subsystem PASSED [ 51%] test/test_macro_subsystem.py::test_sparse_blackbox PASSED [ 52%] test/test_macro_subsystem.py::test_dense_blackbox PASSED [ 52%] test/test_macro_subsystem.py::test_cycle_blackbox PASSED [ 52%] test/test_macro_subsystem.py::test_run_tpm PASSED [ 52%] test/test_macro_subsystem.py::test_macro_cut_is_for_micro_indices PASSED [ 52%] test/test_macro_subsystem.py::test_subsystem_equality PASSED [ 52%] test/test_macro_subsystem.py::test_blackbox PASSED [ 53%] test/test_macro_subsystem.py::test_blackbox_external PASSED [ 53%] test/test_macro_subsystem.py::test_coarse_grain PASSED [ 53%] test/test_macro_subsystem.py::test_blackbox_and_coarse_grain XFAIL [ 53%] test/test_macro_subsystem.py::test_blackbox_and_coarse_grain_external PASSED [ 53%] test/test_macro_subsystem.py::test_blackbox_emergence SKIPPED (need --veryslow option to run) [ 53%] test/test_macro_subsystem.py::test_macro2micro PASSED [ 54%] test/test_macro_subsystem.py::test_blackbox_partial_noise PASSED [ 54%] test/test_macro_subsystem.py::test_blackbox_timescale XFAIL [ 54%] test/test_models.py::test_phi_mechanism_ordering PASSED [ 54%] test/test_models.py::test_sametype_decorator PASSED [ 54%] test/test_models.py::test_numpy_aware_eq_noniterable PASSED [ 55%] test/test_models.py::test_numpy_aware_eq_nparray PASSED [ 55%] test/test_models.py::test_numpy_aware_eq_tuple_nparrays PASSED [ 55%] test/test_models.py::test_numpy_aware_eq_identical PASSED [ 55%] test/test_models.py::test_general_eq_different_attributes PASSED [ 55%] test/test_models.py::test_general_eq_phi_precision_comparison_true PASSED [ 55%] test/test_models.py::test_general_eq_phi_precision_comparison_false PASSED 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test/test_validate.py::test_validate_node_labels PASSED [ 99%] test/test_validate.py::test_validate_time_scale PASSED [ 99%] test/test_validate.py::test_validate_coarse_grain PASSED [ 99%] test/test_validate.py::test_validate_blackbox PASSED [ 99%] test/test_validate.py::test_validate_partition PASSED [ 99%] test/test_validate.py::test_validate_blackbox_and_coarsegrain PASSED [100%] ============================= slowest 5 durations ============================== 14.87s call docs/examples/emergence.rst::emergence.rst 9.46s call docs/examples/2014paper.rst::2014paper.rst 4.80s call test/test_macro_blackbox.py::test_soup 4.60s call test/test_macro_blackbox.py::test_degenerate 2.20s call test/test_macro_subsystem.py::test_cut_mechanisms ================= 554 passed, 21 skipped, 3 xfailed in 53.64s ================== + RPM_EC=0 ++ jobs -p + exit 0 Processing files: python3-pyphi-1.2.1-6.fc39.noarch Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.ehz5tC + umask 022 + cd /builddir/build/BUILD + cd pyphi-1.2.1 + DOCDIR=/builddir/build/BUILDROOT/python-pyphi-1.2.1-6.fc39.x86_64/usr/share/doc/python3-pyphi + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/python-pyphi-1.2.1-6.fc39.x86_64/usr/share/doc/python3-pyphi + cp -pr README.md /builddir/build/BUILDROOT/python-pyphi-1.2.1-6.fc39.x86_64/usr/share/doc/python3-pyphi + cp -pr CHANGELOG.md /builddir/build/BUILDROOT/python-pyphi-1.2.1-6.fc39.x86_64/usr/share/doc/python3-pyphi + cp -pr CACHING.rst /builddir/build/BUILDROOT/python-pyphi-1.2.1-6.fc39.x86_64/usr/share/doc/python3-pyphi + cp -pr redis.conf /builddir/build/BUILDROOT/python-pyphi-1.2.1-6.fc39.x86_64/usr/share/doc/python3-pyphi + RPM_EC=0 ++ jobs -p + exit 0 Provides: python-pyphi = 1.2.1-6.fc39 python3-pyphi = 1.2.1-6.fc39 python3.11-pyphi = 1.2.1-6.fc39 python3.11dist(pyphi) = 1.2.1 python3dist(pyphi) = 1.2.1 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: python(abi) = 3.11 python3.11dist(decorator) >= 4 python3.11dist(joblib) >= 0.8 python3.11dist(numpy) >= 1.11 python3.11dist(psutil) >= 2.1.1 python3.11dist(pyemd) >= 0.3 python3.11dist(pymongo) >= 2.7.1 python3.11dist(pyyaml) >= 3.13 python3.11dist(redis) >= 2.10.5 python3.11dist(scipy) >= 0.13.3 python3.11dist(tblib) >= 1.3.2 python3.11dist(tqdm) >= 4.20 Processing files: python-pyphi-doc-1.2.1-6.fc39.noarch Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.HMHCmt + umask 022 + cd /builddir/build/BUILD + cd pyphi-1.2.1 + DOCDIR=/builddir/build/BUILDROOT/python-pyphi-1.2.1-6.fc39.x86_64/usr/share/doc/python-pyphi-doc + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/python-pyphi-1.2.1-6.fc39.x86_64/usr/share/doc/python-pyphi-doc + cp -pr docs/_build/html/ /builddir/build/BUILDROOT/python-pyphi-1.2.1-6.fc39.x86_64/usr/share/doc/python-pyphi-doc + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.xmgbRi + umask 022 + cd /builddir/build/BUILD + cd pyphi-1.2.1 + LICENSEDIR=/builddir/build/BUILDROOT/python-pyphi-1.2.1-6.fc39.x86_64/usr/share/licenses/python-pyphi-doc + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/python-pyphi-1.2.1-6.fc39.x86_64/usr/share/licenses/python-pyphi-doc + cp -pr LICENSE.md /builddir/build/BUILDROOT/python-pyphi-1.2.1-6.fc39.x86_64/usr/share/licenses/python-pyphi-doc + RPM_EC=0 ++ jobs -p + exit 0 Provides: python-pyphi-doc = 1.2.1-6.fc39 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/python-pyphi-1.2.1-6.fc39.x86_64 Wrote: /builddir/build/SRPMS/python-pyphi-1.2.1-6.fc39.src.rpm Wrote: /builddir/build/RPMS/python-pyphi-doc-1.2.1-6.fc39.noarch.rpm Wrote: /builddir/build/RPMS/python3-pyphi-1.2.1-6.fc39.noarch.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.nH4giQ + umask 022 + cd /builddir/build/BUILD + cd pyphi-1.2.1 + /usr/bin/rm -rf /builddir/build/BUILDROOT/python-pyphi-1.2.1-6.fc39.x86_64 + RPM_EC=0 ++ jobs -p + exit 0 Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.GRPAwa + umask 022 + cd /builddir/build/BUILD + rm -rf pyphi-1.2.1 pyphi-1.2.1.gemspec + RPM_EC=0 ++ jobs -p + exit 0 Child return code was: 0