Mock Version: 3.5 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/python-neatdend.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1676556259.386270/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1001gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.lje6a6fl:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.lje6a6fl:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'faea36ee47c64b2690eff5ea7b39bb8d', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1676556259.386270/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.lje6a6fl:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/python-neatdend.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1675382400 Wrote: /builddir/build/SRPMS/python-neatdend-0.9.2-11.fc39.src.rpm Child return code was: 0 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -br --target x86_64 --nodeps /builddir/build/SPECS/python-neatdend.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1676556259.386270/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1001gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.lje6a6fl:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueraiseExc=FalseprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.lje6a6fl:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '8ae19c7cac4a4644886607aa0cce665b', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1676556259.386270/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.lje6a6fl:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -br --target x86_64 --nodeps /builddir/build/SPECS/python-neatdend.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1675382400 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.1aMmVF + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf NEAT-0.9.2 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/python-neatdend-0.9.2.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd NEAT-0.9.2 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + /usr/bin/git init -q + /usr/bin/git config user.name rpm-build + /usr/bin/git config user.email '' + /usr/bin/git config gc.auto 0 + /usr/bin/git add --force . + /usr/bin/git commit -q --allow-empty -a --author 'rpm-build ' -m 'python-neatdend-0.9.2 base' + /usr/bin/git checkout --track -b rpm-build Switched to a new branch 'rpm-build' branch 'rpm-build' set up to track 'master'. + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0001-feat-support-all-arches.patch + /usr/bin/git apply --index --reject - Checking patch neat/tools/simtools/neuron/neuronmodel.py... Applied patch neat/tools/simtools/neuron/neuronmodel.py cleanly. + /usr/bin/git commit -q -m 0001-feat-support-all-arches.patch --author 'rpm-build ' + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/504b39822b9913e5a8c6aff65df840cc2e31167d.patch + /usr/bin/git apply --index --reject - Checking patch neat/tools/simtools/net/netsim.pyx... Applied patch neat/tools/simtools/net/netsim.pyx cleanly. + /usr/bin/git commit -q -m 504b39822b9913e5a8c6aff65df840cc2e31167d.patch --author 'rpm-build ' + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/8eb1f4be85da0c8fdbcbac627c5198a67e29b22c.patch + /usr/bin/git apply --index --reject - Checking patch neat/tools/plottools/scalebars.py... Applied patch neat/tools/plottools/scalebars.py cleanly. + /usr/bin/git commit -q -m 8eb1f4be85da0c8fdbcbac627c5198a67e29b22c.patch --author 'rpm-build ' + sed -i 's/^numpy~=1.20.2/numpy>=1.20.2/' requirements/requirements.txt + sed -i 's/^matplotlib~=3.4.1/matplotlib>=3.4.1/' requirements/requirements.txt + sed -i 's/^pytest~=5.3.2/pytest>=5.3.2/' requirements/requirements.txt + sed -i 's/^scikit_learn~=0.24.2/scikit_learn>=0.24.2/' requirements/requirements.txt + sed -i 's/^scipy~=1.6.3/scipy>=1.6.3/' requirements/requirements.txt + sed -i 's/^sympy~=1.7.1/sympy>=1.7.1/' requirements/requirements.txt + RPM_EC=0 ++ jobs -p + exit 0 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.IhBumh + umask 022 + cd /builddir/build/BUILD + cd NEAT-0.9.2 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + echo '(python3dist(toml) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/NEAT-0.9.2/.pyproject-builddir + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + TMPDIR=/builddir/build/BUILD/NEAT-0.9.2/.pyproject-builddir + RPM_TOXENV=py311 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/NEAT-0.9.2/pyproject-wheeldir -r Handling setuptools from build-system.requires Requirement not satisfied: setuptools Handling wheel from build-system.requires Requirement not satisfied: wheel Handling Cython from build-system.requires Requirement not satisfied: Cython Handling numpy from build-system.requires Requirement not satisfied: numpy Handling setuptools >= 40.8 from default build backend Requirement not satisfied: setuptools >= 40.8 Handling wheel from default build backend Requirement not satisfied: wheel Exiting dependency generation pass: build backend + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-neatdend-0.9.2-11.fc39.buildreqs.nosrc.rpm Child return code was: 11 Dynamic buildrequires detected Going to install missing buildrequires. See root.log for details. ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -br --target x86_64 --nodeps /builddir/build/SPECS/python-neatdend.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1676556259.386270/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1001gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.lje6a6fl:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueraiseExc=FalseprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.lje6a6fl:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'b310b3d4dda14548b654e16678abf20e', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1676556259.386270/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.lje6a6fl:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -br --target x86_64 --nodeps /builddir/build/SPECS/python-neatdend.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1675382400 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.rBblFc + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf NEAT-0.9.2 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/python-neatdend-0.9.2.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd NEAT-0.9.2 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + /usr/bin/git init -q + /usr/bin/git config user.name rpm-build + /usr/bin/git config user.email '' + /usr/bin/git config gc.auto 0 + /usr/bin/git add --force . + /usr/bin/git commit -q --allow-empty -a --author 'rpm-build ' -m 'python-neatdend-0.9.2 base' + /usr/bin/git checkout --track -b rpm-build Switched to a new branch 'rpm-build' branch 'rpm-build' set up to track 'master'. + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0001-feat-support-all-arches.patch + /usr/bin/git apply --index --reject - Checking patch neat/tools/simtools/neuron/neuronmodel.py... Applied patch neat/tools/simtools/neuron/neuronmodel.py cleanly. + /usr/bin/git commit -q -m 0001-feat-support-all-arches.patch --author 'rpm-build ' + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/504b39822b9913e5a8c6aff65df840cc2e31167d.patch + /usr/bin/git apply --index --reject - Checking patch neat/tools/simtools/net/netsim.pyx... Applied patch neat/tools/simtools/net/netsim.pyx cleanly. + /usr/bin/git commit -q -m 504b39822b9913e5a8c6aff65df840cc2e31167d.patch --author 'rpm-build ' + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/8eb1f4be85da0c8fdbcbac627c5198a67e29b22c.patch + /usr/bin/git apply --index --reject - Checking patch neat/tools/plottools/scalebars.py... Applied patch neat/tools/plottools/scalebars.py cleanly. + /usr/bin/git commit -q -m 8eb1f4be85da0c8fdbcbac627c5198a67e29b22c.patch --author 'rpm-build ' + sed -i 's/^numpy~=1.20.2/numpy>=1.20.2/' requirements/requirements.txt + sed -i 's/^matplotlib~=3.4.1/matplotlib>=3.4.1/' requirements/requirements.txt + sed -i 's/^pytest~=5.3.2/pytest>=5.3.2/' requirements/requirements.txt + sed -i 's/^scikit_learn~=0.24.2/scikit_learn>=0.24.2/' requirements/requirements.txt + sed -i 's/^scipy~=1.6.3/scipy>=1.6.3/' requirements/requirements.txt + sed -i 's/^sympy~=1.7.1/sympy>=1.7.1/' requirements/requirements.txt + RPM_EC=0 ++ jobs -p + exit 0 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.NlUynt + umask 022 + cd /builddir/build/BUILD + cd NEAT-0.9.2 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + echo '(python3dist(toml) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/NEAT-0.9.2/.pyproject-builddir + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + TMPDIR=/builddir/build/BUILD/NEAT-0.9.2/.pyproject-builddir + RPM_TOXENV=py311 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/NEAT-0.9.2/pyproject-wheeldir -r Handling setuptools from build-system.requires Requirement satisfied: setuptools (installed: setuptools 65.5.1) Handling wheel from build-system.requires Requirement satisfied: wheel (installed: wheel 0.38.4) Handling Cython from build-system.requires Requirement satisfied: Cython (installed: Cython 0.29.32) Handling numpy from build-system.requires Requirement satisfied: numpy (installed: numpy 1.24.1) Handling setuptools >= 40.8 from default build backend Requirement satisfied: setuptools >= 40.8 (installed: setuptools 65.5.1) Handling wheel from default build backend Requirement satisfied: wheel (installed: wheel 0.38.4) warning: no files found matching 'LICENCE.txt' HOOK STDOUT: Warning: Multiple cython sources found for extension 'netsim': ['neat/tools/simtools/net/netsim.pyx', 'neat/tools/simtools/net/netsim.pyx'] HOOK STDOUT: See http://cython.readthedocs.io/en/latest/src/userguide/sharing_declarations.html for sharing declarations among Cython files. HOOK STDOUT: Compiling neat/tools/simtools/net/netsim.pyx because it changed. HOOK STDOUT: [1/1] Cythonizing neat/tools/simtools/net/netsim.pyx HOOK STDOUT: running egg_info HOOK STDOUT: creating neatdend.egg-info HOOK STDOUT: writing neatdend.egg-info/PKG-INFO HOOK STDOUT: writing dependency_links to neatdend.egg-info/dependency_links.txt HOOK STDOUT: writing requirements to neatdend.egg-info/requires.txt HOOK STDOUT: writing top-level names to neatdend.egg-info/top_level.txt HOOK STDOUT: writing manifest file 'neatdend.egg-info/SOURCES.txt' HOOK STDOUT: reading manifest file 'neatdend.egg-info/SOURCES.txt' HOOK STDOUT: reading manifest template 'MANIFEST.in' HOOK STDOUT: adding license file 'LICENSE.txt' HOOK STDOUT: writing manifest file 'neatdend.egg-info/SOURCES.txt' Handling wheel from get_requires_for_build_wheel Requirement satisfied: wheel (installed: wheel 0.38.4) warning: no files found matching 'LICENCE.txt' HOOK STDOUT: Warning: Multiple cython sources found for extension 'netsim': ['neat/tools/simtools/net/netsim.pyx', 'neat/tools/simtools/net/netsim.pyx'] HOOK STDOUT: See http://cython.readthedocs.io/en/latest/src/userguide/sharing_declarations.html for sharing declarations among Cython files. HOOK STDOUT: running dist_info HOOK STDOUT: writing neatdend.egg-info/PKG-INFO HOOK STDOUT: writing dependency_links to neatdend.egg-info/dependency_links.txt HOOK STDOUT: writing requirements to neatdend.egg-info/requires.txt HOOK STDOUT: writing top-level names to neatdend.egg-info/top_level.txt HOOK STDOUT: reading manifest file 'neatdend.egg-info/SOURCES.txt' HOOK STDOUT: reading manifest template 'MANIFEST.in' HOOK STDOUT: adding license file 'LICENSE.txt' HOOK STDOUT: writing manifest file 'neatdend.egg-info/SOURCES.txt' HOOK STDOUT: creating '/builddir/build/BUILD/NEAT-0.9.2/neatdend-0.9.1.dist-info' Handling numpy (>=1.20.2) from hook generated metadata: Requires-Dist Requirement satisfied: numpy (>=1.20.2) (installed: numpy 1.24.1) Handling matplotlib (>=3.4.1) from hook generated metadata: Requires-Dist Requirement not satisfied: matplotlib (>=3.4.1) Handling cython (~=0.29.4) from hook generated metadata: Requires-Dist Requirement satisfied: cython (~=0.29.4) (installed: cython 0.29.32) Handling scipy (>=1.6.3) from hook generated metadata: Requires-Dist Requirement not satisfied: scipy (>=1.6.3) Handling sympy (>=1.7.1) from hook generated metadata: Requires-Dist Requirement not satisfied: sympy (>=1.7.1) Handling pytest (>=5.3.2) from hook generated metadata: Requires-Dist Requirement satisfied: pytest (>=5.3.2) (installed: pytest 7.2.1) Handling scikit-learn (>=0.24.2) from hook generated metadata: Requires-Dist Requirement not satisfied: scikit-learn (>=0.24.2) + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-neatdend-0.9.2-11.fc39.buildreqs.nosrc.rpm Child return code was: 11 Dynamic buildrequires detected Going to install missing buildrequires. See root.log for details. ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -br --target x86_64 --nodeps /builddir/build/SPECS/python-neatdend.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1676556259.386270/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1001gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.lje6a6fl:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueraiseExc=FalseprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.lje6a6fl:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '5194282711544a3e8094c77b243ac0c6', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1676556259.386270/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.lje6a6fl:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -br --target x86_64 --nodeps /builddir/build/SPECS/python-neatdend.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1675382400 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.AsruU8 + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf NEAT-0.9.2 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/python-neatdend-0.9.2.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd NEAT-0.9.2 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + /usr/bin/git init -q + /usr/bin/git config user.name rpm-build + /usr/bin/git config user.email '' + /usr/bin/git config gc.auto 0 + /usr/bin/git add --force . + /usr/bin/git commit -q --allow-empty -a --author 'rpm-build ' -m 'python-neatdend-0.9.2 base' + /usr/bin/git checkout --track -b rpm-build Switched to a new branch 'rpm-build' branch 'rpm-build' set up to track 'master'. + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0001-feat-support-all-arches.patch + /usr/bin/git apply --index --reject - Checking patch neat/tools/simtools/neuron/neuronmodel.py... Applied patch neat/tools/simtools/neuron/neuronmodel.py cleanly. + /usr/bin/git commit -q -m 0001-feat-support-all-arches.patch --author 'rpm-build ' + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/504b39822b9913e5a8c6aff65df840cc2e31167d.patch + /usr/bin/git apply --index --reject - Checking patch neat/tools/simtools/net/netsim.pyx... Applied patch neat/tools/simtools/net/netsim.pyx cleanly. + /usr/bin/git commit -q -m 504b39822b9913e5a8c6aff65df840cc2e31167d.patch --author 'rpm-build ' + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/8eb1f4be85da0c8fdbcbac627c5198a67e29b22c.patch + /usr/bin/git apply --index --reject - Checking patch neat/tools/plottools/scalebars.py... Applied patch neat/tools/plottools/scalebars.py cleanly. + /usr/bin/git commit -q -m 8eb1f4be85da0c8fdbcbac627c5198a67e29b22c.patch --author 'rpm-build ' + sed -i 's/^numpy~=1.20.2/numpy>=1.20.2/' requirements/requirements.txt + sed -i 's/^matplotlib~=3.4.1/matplotlib>=3.4.1/' requirements/requirements.txt + sed -i 's/^pytest~=5.3.2/pytest>=5.3.2/' requirements/requirements.txt + sed -i 's/^scikit_learn~=0.24.2/scikit_learn>=0.24.2/' requirements/requirements.txt + sed -i 's/^scipy~=1.6.3/scipy>=1.6.3/' requirements/requirements.txt + sed -i 's/^sympy~=1.7.1/sympy>=1.7.1/' requirements/requirements.txt + RPM_EC=0 ++ jobs -p + exit 0 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.rVIk0P + umask 022 + cd /builddir/build/BUILD + cd NEAT-0.9.2 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + echo '(python3dist(toml) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/NEAT-0.9.2/.pyproject-builddir + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + TMPDIR=/builddir/build/BUILD/NEAT-0.9.2/.pyproject-builddir + RPM_TOXENV=py311 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/NEAT-0.9.2/pyproject-wheeldir -r Handling setuptools from build-system.requires Requirement satisfied: setuptools (installed: setuptools 65.5.1) Handling wheel from build-system.requires Requirement satisfied: wheel (installed: wheel 0.38.4) Handling Cython from build-system.requires Requirement satisfied: Cython (installed: Cython 0.29.32) Handling numpy from build-system.requires Requirement satisfied: numpy (installed: numpy 1.24.1) Handling setuptools >= 40.8 from default build backend Requirement satisfied: setuptools >= 40.8 (installed: setuptools 65.5.1) Handling wheel from default build backend Requirement satisfied: wheel (installed: wheel 0.38.4) warning: no files found matching 'LICENCE.txt' HOOK STDOUT: Warning: Multiple cython sources found for extension 'netsim': ['neat/tools/simtools/net/netsim.pyx', 'neat/tools/simtools/net/netsim.pyx'] HOOK STDOUT: See http://cython.readthedocs.io/en/latest/src/userguide/sharing_declarations.html for sharing declarations among Cython files. HOOK STDOUT: Compiling neat/tools/simtools/net/netsim.pyx because it changed. HOOK STDOUT: [1/1] Cythonizing neat/tools/simtools/net/netsim.pyx HOOK STDOUT: running egg_info HOOK STDOUT: creating neatdend.egg-info HOOK STDOUT: writing neatdend.egg-info/PKG-INFO HOOK STDOUT: writing dependency_links to neatdend.egg-info/dependency_links.txt HOOK STDOUT: writing requirements to neatdend.egg-info/requires.txt HOOK STDOUT: writing top-level names to neatdend.egg-info/top_level.txt HOOK STDOUT: writing manifest file 'neatdend.egg-info/SOURCES.txt' HOOK STDOUT: reading manifest file 'neatdend.egg-info/SOURCES.txt' HOOK STDOUT: reading manifest template 'MANIFEST.in' HOOK STDOUT: adding license file 'LICENSE.txt' HOOK STDOUT: writing manifest file 'neatdend.egg-info/SOURCES.txt' Handling wheel from get_requires_for_build_wheel Requirement satisfied: wheel (installed: wheel 0.38.4) warning: no files found matching 'LICENCE.txt' HOOK STDOUT: Warning: Multiple cython sources found for extension 'netsim': ['neat/tools/simtools/net/netsim.pyx', 'neat/tools/simtools/net/netsim.pyx'] HOOK STDOUT: See http://cython.readthedocs.io/en/latest/src/userguide/sharing_declarations.html for sharing declarations among Cython files. HOOK STDOUT: running dist_info HOOK STDOUT: writing neatdend.egg-info/PKG-INFO HOOK STDOUT: writing dependency_links to neatdend.egg-info/dependency_links.txt HOOK STDOUT: writing requirements to neatdend.egg-info/requires.txt HOOK STDOUT: writing top-level names to neatdend.egg-info/top_level.txt HOOK STDOUT: reading manifest file 'neatdend.egg-info/SOURCES.txt' HOOK STDOUT: reading manifest template 'MANIFEST.in' HOOK STDOUT: adding license file 'LICENSE.txt' HOOK STDOUT: writing manifest file 'neatdend.egg-info/SOURCES.txt' HOOK STDOUT: creating '/builddir/build/BUILD/NEAT-0.9.2/neatdend-0.9.1.dist-info' Handling numpy (>=1.20.2) from hook generated metadata: Requires-Dist Requirement satisfied: numpy (>=1.20.2) (installed: numpy 1.24.1) Handling matplotlib (>=3.4.1) from hook generated metadata: Requires-Dist Requirement satisfied: matplotlib (>=3.4.1) (installed: matplotlib 3.6.3) Handling cython (~=0.29.4) from hook generated metadata: Requires-Dist Requirement satisfied: cython (~=0.29.4) (installed: cython 0.29.32) Handling scipy (>=1.6.3) from hook generated metadata: Requires-Dist Requirement satisfied: scipy (>=1.6.3) (installed: scipy 1.8.1) Handling sympy (>=1.7.1) from hook generated metadata: Requires-Dist Requirement satisfied: sympy (>=1.7.1) (installed: sympy 1.11.1) Handling pytest (>=5.3.2) from hook generated metadata: Requires-Dist Requirement satisfied: pytest (>=5.3.2) (installed: pytest 7.2.1) Handling scikit-learn (>=0.24.2) from hook generated metadata: Requires-Dist Requirement satisfied: scikit-learn (>=0.24.2) (installed: scikit-learn 1.1.2) + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-neatdend-0.9.2-11.fc39.buildreqs.nosrc.rpm Child return code was: 11 Dynamic buildrequires detected Going to install missing buildrequires. See root.log for details. ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -ba --noprep --target x86_64 --nodeps /builddir/build/SPECS/python-neatdend.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1676556259.386270/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1001gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.lje6a6fl:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.lje6a6fl:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '11b581c32bb64951a44c5633930eccf5', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1676556259.386270/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.lje6a6fl:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -ba --noprep --target x86_64 --nodeps /builddir/build/SPECS/python-neatdend.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1675382400 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.0xQmzk + umask 022 + cd /builddir/build/BUILD + cd NEAT-0.9.2 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + echo '(python3dist(toml) if python3-devel < 3.11)' + rm -rfv neatdend-0.9.1.dist-info/ removed 'neatdend-0.9.1.dist-info/LICENSE.txt' removed 'neatdend-0.9.1.dist-info/METADATA' removed 'neatdend-0.9.1.dist-info/top_level.txt' removed directory 'neatdend-0.9.1.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/NEAT-0.9.2/.pyproject-builddir + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + TMPDIR=/builddir/build/BUILD/NEAT-0.9.2/.pyproject-builddir + RPM_TOXENV=py311 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/NEAT-0.9.2/pyproject-wheeldir -r Handling setuptools from build-system.requires Requirement satisfied: setuptools (installed: setuptools 65.5.1) Handling wheel from build-system.requires Requirement satisfied: wheel (installed: wheel 0.38.4) Handling Cython from build-system.requires Requirement satisfied: Cython (installed: Cython 0.29.32) Handling numpy from build-system.requires Requirement satisfied: numpy (installed: numpy 1.24.1) Handling setuptools >= 40.8 from default build backend Requirement satisfied: setuptools >= 40.8 (installed: setuptools 65.5.1) Handling wheel from default build backend Requirement satisfied: wheel (installed: wheel 0.38.4) warning: no files found matching 'LICENCE.txt' HOOK STDOUT: Warning: Multiple cython sources found for extension 'netsim': ['neat/tools/simtools/net/netsim.pyx', 'neat/tools/simtools/net/netsim.pyx'] HOOK STDOUT: See http://cython.readthedocs.io/en/latest/src/userguide/sharing_declarations.html for sharing declarations among Cython files. HOOK STDOUT: running egg_info HOOK STDOUT: writing neatdend.egg-info/PKG-INFO HOOK STDOUT: writing dependency_links to neatdend.egg-info/dependency_links.txt HOOK STDOUT: writing requirements to neatdend.egg-info/requires.txt HOOK STDOUT: writing top-level names to neatdend.egg-info/top_level.txt HOOK STDOUT: reading manifest file 'neatdend.egg-info/SOURCES.txt' HOOK STDOUT: reading manifest template 'MANIFEST.in' HOOK STDOUT: adding license file 'LICENSE.txt' HOOK STDOUT: writing manifest file 'neatdend.egg-info/SOURCES.txt' Handling wheel from get_requires_for_build_wheel Requirement satisfied: wheel (installed: wheel 0.38.4) warning: no files found matching 'LICENCE.txt' HOOK STDOUT: Warning: Multiple cython sources found for extension 'netsim': ['neat/tools/simtools/net/netsim.pyx', 'neat/tools/simtools/net/netsim.pyx'] HOOK STDOUT: See http://cython.readthedocs.io/en/latest/src/userguide/sharing_declarations.html for sharing declarations among Cython files. HOOK STDOUT: running dist_info HOOK STDOUT: writing neatdend.egg-info/PKG-INFO HOOK STDOUT: writing dependency_links to neatdend.egg-info/dependency_links.txt HOOK STDOUT: writing requirements to neatdend.egg-info/requires.txt HOOK STDOUT: writing top-level names to neatdend.egg-info/top_level.txt HOOK STDOUT: reading manifest file 'neatdend.egg-info/SOURCES.txt' HOOK STDOUT: reading manifest template 'MANIFEST.in' HOOK STDOUT: adding license file 'LICENSE.txt' HOOK STDOUT: writing manifest file 'neatdend.egg-info/SOURCES.txt' HOOK STDOUT: creating '/builddir/build/BUILD/NEAT-0.9.2/neatdend-0.9.1.dist-info' Handling numpy (>=1.20.2) from hook generated metadata: Requires-Dist Requirement satisfied: numpy (>=1.20.2) (installed: numpy 1.24.1) Handling matplotlib (>=3.4.1) from hook generated metadata: Requires-Dist Requirement satisfied: matplotlib (>=3.4.1) (installed: matplotlib 3.6.3) Handling cython (~=0.29.4) from hook generated metadata: Requires-Dist Requirement satisfied: cython (~=0.29.4) (installed: cython 0.29.32) Handling scipy (>=1.6.3) from hook generated metadata: Requires-Dist Requirement satisfied: scipy (>=1.6.3) (installed: scipy 1.8.1) Handling sympy (>=1.7.1) from hook generated metadata: Requires-Dist Requirement satisfied: sympy (>=1.7.1) (installed: sympy 1.11.1) Handling pytest (>=5.3.2) from hook generated metadata: Requires-Dist Requirement satisfied: pytest (>=5.3.2) (installed: pytest 7.2.1) Handling scikit-learn (>=0.24.2) from hook generated metadata: Requires-Dist Requirement satisfied: scikit-learn (>=0.24.2) (installed: scikit-learn 1.1.2) + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.pPH1qs + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd NEAT-0.9.2 + mkdir -p /builddir/build/BUILD/NEAT-0.9.2/.pyproject-builddir + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + TMPDIR=/builddir/build/BUILD/NEAT-0.9.2/.pyproject-builddir + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_wheel.py /builddir/build/BUILD/NEAT-0.9.2/pyproject-wheeldir Processing /builddir/build/BUILD/NEAT-0.9.2 Preparing metadata (pyproject.toml): started Running command Preparing metadata (pyproject.toml) Warning: Multiple cython sources found for extension 'netsim': ['neat/tools/simtools/net/netsim.pyx', 'neat/tools/simtools/net/netsim.pyx'] See http://cython.readthedocs.io/en/latest/src/userguide/sharing_declarations.html for sharing declarations among Cython files. running dist_info creating /builddir/build/BUILD/NEAT-0.9.2/.pyproject-builddir/pip-modern-metadata-dsxeqq4g/neatdend.egg-info writing /builddir/build/BUILD/NEAT-0.9.2/.pyproject-builddir/pip-modern-metadata-dsxeqq4g/neatdend.egg-info/PKG-INFO writing dependency_links to /builddir/build/BUILD/NEAT-0.9.2/.pyproject-builddir/pip-modern-metadata-dsxeqq4g/neatdend.egg-info/dependency_links.txt writing requirements to /builddir/build/BUILD/NEAT-0.9.2/.pyproject-builddir/pip-modern-metadata-dsxeqq4g/neatdend.egg-info/requires.txt writing top-level names to /builddir/build/BUILD/NEAT-0.9.2/.pyproject-builddir/pip-modern-metadata-dsxeqq4g/neatdend.egg-info/top_level.txt writing manifest file '/builddir/build/BUILD/NEAT-0.9.2/.pyproject-builddir/pip-modern-metadata-dsxeqq4g/neatdend.egg-info/SOURCES.txt' reading manifest file '/builddir/build/BUILD/NEAT-0.9.2/.pyproject-builddir/pip-modern-metadata-dsxeqq4g/neatdend.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'LICENCE.txt' adding license file 'LICENSE.txt' writing manifest file '/builddir/build/BUILD/NEAT-0.9.2/.pyproject-builddir/pip-modern-metadata-dsxeqq4g/neatdend.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/NEAT-0.9.2/.pyproject-builddir/pip-modern-metadata-dsxeqq4g/neatdend-0.9.1.dist-info' Preparing metadata (pyproject.toml): finished with status 'done' Building wheels for collected packages: neatdend Building wheel for neatdend (pyproject.toml): started Running command Building wheel for neatdend (pyproject.toml) Warning: Multiple cython sources found for extension 'netsim': ['neat/tools/simtools/net/netsim.pyx', 'neat/tools/simtools/net/netsim.pyx'] See http://cython.readthedocs.io/en/latest/src/userguide/sharing_declarations.html for sharing declarations among Cython files. running bdist_wheel running build running build_py creating build creating build/lib.linux-x86_64-cpython-311 creating build/lib.linux-x86_64-cpython-311/neat copying neat/__version__.py -> build/lib.linux-x86_64-cpython-311/neat copying neat/__init__.py -> build/lib.linux-x86_64-cpython-311/neat creating build/lib.linux-x86_64-cpython-311/neat/trees copying neat/trees/stree.py -> build/lib.linux-x86_64-cpython-311/neat/trees copying neat/trees/sovtree.py -> build/lib.linux-x86_64-cpython-311/neat/trees copying neat/trees/phystree.py -> build/lib.linux-x86_64-cpython-311/neat/trees copying neat/trees/netree.py -> build/lib.linux-x86_64-cpython-311/neat/trees copying neat/trees/morphtree.py -> build/lib.linux-x86_64-cpython-311/neat/trees copying neat/trees/greenstree.py -> build/lib.linux-x86_64-cpython-311/neat/trees copying neat/trees/compartmenttree.py -> build/lib.linux-x86_64-cpython-311/neat/trees copying neat/trees/__init__.py -> build/lib.linux-x86_64-cpython-311/neat/trees creating build/lib.linux-x86_64-cpython-311/neat/tools copying neat/tools/kernelextraction.py -> build/lib.linux-x86_64-cpython-311/neat/tools copying neat/tools/__init__.py -> build/lib.linux-x86_64-cpython-311/neat/tools creating build/lib.linux-x86_64-cpython-311/neat/tools/fittools copying neat/tools/fittools/zerofinding.py -> build/lib.linux-x86_64-cpython-311/neat/tools/fittools copying neat/tools/fittools/iepsolver.py -> build/lib.linux-x86_64-cpython-311/neat/tools/fittools copying neat/tools/fittools/histogramsegmentation.py -> build/lib.linux-x86_64-cpython-311/neat/tools/fittools copying neat/tools/fittools/compartmentfitter.py -> build/lib.linux-x86_64-cpython-311/neat/tools/fittools copying neat/tools/fittools/__init__.py -> build/lib.linux-x86_64-cpython-311/neat/tools/fittools creating build/lib.linux-x86_64-cpython-311/neat/tools/plottools copying neat/tools/plottools/scalebars.py -> build/lib.linux-x86_64-cpython-311/neat/tools/plottools copying neat/tools/plottools/__init__.py -> build/lib.linux-x86_64-cpython-311/neat/tools/plottools creating build/lib.linux-x86_64-cpython-311/neat/tools/simtools creating build/lib.linux-x86_64-cpython-311/neat/tools/simtools/neuron copying neat/tools/simtools/neuron/neuronmodel.py -> build/lib.linux-x86_64-cpython-311/neat/tools/simtools/neuron copying neat/tools/simtools/neuron/__init__.py -> build/lib.linux-x86_64-cpython-311/neat/tools/simtools/neuron creating build/lib.linux-x86_64-cpython-311/neat/channels copying neat/channels/writemodfiles.py -> build/lib.linux-x86_64-cpython-311/neat/channels copying neat/channels/writecppcode.py -> build/lib.linux-x86_64-cpython-311/neat/channels copying neat/channels/ionchannels.py -> build/lib.linux-x86_64-cpython-311/neat/channels copying neat/channels/concmechs.py -> build/lib.linux-x86_64-cpython-311/neat/channels copying neat/channels/__init__.py -> build/lib.linux-x86_64-cpython-311/neat/channels creating build/lib.linux-x86_64-cpython-311/neat/channels/channelcollection copying neat/channels/channelcollection/channelcollection.py -> build/lib.linux-x86_64-cpython-311/neat/channels/channelcollection copying neat/channels/channelcollection/__init__.py -> build/lib.linux-x86_64-cpython-311/neat/channels/channelcollection running egg_info writing neatdend.egg-info/PKG-INFO writing dependency_links to neatdend.egg-info/dependency_links.txt writing requirements to neatdend.egg-info/requires.txt writing top-level names to neatdend.egg-info/top_level.txt reading manifest file 'neatdend.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'LICENCE.txt' adding license file 'LICENSE.txt' writing manifest file 'neatdend.egg-info/SOURCES.txt' /usr/lib/python3.11/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'neat.tools.simtools.net' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'neat.tools.simtools.net' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'neat.tools.simtools.net' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'neat.tools.simtools.net' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/lib/python3.11/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'neat.tools.simtools.neuron.mech_storage' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'neat.tools.simtools.neuron.mech_storage' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'neat.tools.simtools.neuron.mech_storage' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'neat.tools.simtools.neuron.mech_storage' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) creating build/lib.linux-x86_64-cpython-311/neat/tools/simtools/net copying neat/tools/simtools/net/Ionchannels.cc -> build/lib.linux-x86_64-cpython-311/neat/tools/simtools/net copying neat/tools/simtools/net/Ionchannels.h -> build/lib.linux-x86_64-cpython-311/neat/tools/simtools/net copying neat/tools/simtools/net/NETC.cc -> build/lib.linux-x86_64-cpython-311/neat/tools/simtools/net copying neat/tools/simtools/net/NETC.h -> build/lib.linux-x86_64-cpython-311/neat/tools/simtools/net copying neat/tools/simtools/net/Synapses.cc -> build/lib.linux-x86_64-cpython-311/neat/tools/simtools/net copying neat/tools/simtools/net/Synapses.h -> build/lib.linux-x86_64-cpython-311/neat/tools/simtools/net copying neat/tools/simtools/net/Tools.cc -> build/lib.linux-x86_64-cpython-311/neat/tools/simtools/net copying neat/tools/simtools/net/netsim.cpp -> build/lib.linux-x86_64-cpython-311/neat/tools/simtools/net copying neat/tools/simtools/net/netsim.pyx -> build/lib.linux-x86_64-cpython-311/neat/tools/simtools/net creating build/lib.linux-x86_64-cpython-311/neat/tools/simtools/neuron/mech_storage copying neat/tools/simtools/neuron/mech_storage/CaDyn.mod -> build/lib.linux-x86_64-cpython-311/neat/tools/simtools/neuron/mech_storage copying neat/tools/simtools/neuron/mech_storage/CaPump.mod -> build/lib.linux-x86_64-cpython-311/neat/tools/simtools/neuron/mech_storage copying neat/tools/simtools/neuron/mech_storage/NMDA_Mg_T.mod -> build/lib.linux-x86_64-cpython-311/neat/tools/simtools/neuron/mech_storage copying neat/tools/simtools/neuron/mech_storage/OUClamp.mod -> build/lib.linux-x86_64-cpython-311/neat/tools/simtools/neuron/mech_storage copying neat/tools/simtools/neuron/mech_storage/OUClamp2.mod -> build/lib.linux-x86_64-cpython-311/neat/tools/simtools/neuron/mech_storage copying neat/tools/simtools/neuron/mech_storage/OUConductance.mod -> build/lib.linux-x86_64-cpython-311/neat/tools/simtools/neuron/mech_storage copying neat/tools/simtools/neuron/mech_storage/OUReversal.mod -> build/lib.linux-x86_64-cpython-311/neat/tools/simtools/neuron/mech_storage copying neat/tools/simtools/neuron/mech_storage/Shunt.mod -> build/lib.linux-x86_64-cpython-311/neat/tools/simtools/neuron/mech_storage copying neat/tools/simtools/neuron/mech_storage/SinClamp.mod -> build/lib.linux-x86_64-cpython-311/neat/tools/simtools/neuron/mech_storage copying neat/tools/simtools/neuron/mech_storage/VecStim.mod -> build/lib.linux-x86_64-cpython-311/neat/tools/simtools/neuron/mech_storage copying neat/tools/simtools/neuron/mech_storage/WNClamp.mod -> build/lib.linux-x86_64-cpython-311/neat/tools/simtools/neuron/mech_storage copying neat/tools/simtools/neuron/mech_storage/conc_ca.mod -> build/lib.linux-x86_64-cpython-311/neat/tools/simtools/neuron/mech_storage copying neat/tools/simtools/neuron/mech_storage/conc_ca_.mod -> build/lib.linux-x86_64-cpython-311/neat/tools/simtools/neuron/mech_storage copying neat/tools/simtools/neuron/mech_storage/conc_ca__.mod -> build/lib.linux-x86_64-cpython-311/neat/tools/simtools/neuron/mech_storage copying neat/tools/simtools/neuron/mech_storage/double_exp_AMPA_NMDA.mod -> build/lib.linux-x86_64-cpython-311/neat/tools/simtools/neuron/mech_storage copying neat/tools/simtools/neuron/mech_storage/double_exp_AMPA_NMDA_modified.mod -> build/lib.linux-x86_64-cpython-311/neat/tools/simtools/neuron/mech_storage copying neat/tools/simtools/neuron/mech_storage/double_exp_AMPA_NMDA_modified2.mod -> build/lib.linux-x86_64-cpython-311/neat/tools/simtools/neuron/mech_storage copying neat/tools/simtools/neuron/mech_storage/double_exp_AMPA_NMDA_rescaled.mod -> build/lib.linux-x86_64-cpython-311/neat/tools/simtools/neuron/mech_storage copying neat/tools/simtools/neuron/mech_storage/double_exp_AMPA_NMDA_rescaled_prox.mod -> build/lib.linux-x86_64-cpython-311/neat/tools/simtools/neuron/mech_storage copying neat/tools/simtools/neuron/mech_storage/double_exp_AMPA_NMDA_v_from_vector.mod -> build/lib.linux-x86_64-cpython-311/neat/tools/simtools/neuron/mech_storage copying neat/tools/simtools/neuron/mech_storage/epsc_double_exp.mod -> build/lib.linux-x86_64-cpython-311/neat/tools/simtools/neuron/mech_storage copying neat/tools/simtools/neuron/mech_storage/exp_AMPA_NMDA.mod -> build/lib.linux-x86_64-cpython-311/neat/tools/simtools/neuron/mech_storage copying neat/tools/simtools/neuron/mech_storage/gap.mod -> build/lib.linux-x86_64-cpython-311/neat/tools/simtools/neuron/mech_storage copying neat/tools/simtools/neuron/mech_storage/rel.mod -> build/lib.linux-x86_64-cpython-311/neat/tools/simtools/neuron/mech_storage copying neat/tools/simtools/neuron/mech_storage/release_BMK.mod -> build/lib.linux-x86_64-cpython-311/neat/tools/simtools/neuron/mech_storage copying neat/channels/compilechannels -> build/lib.linux-x86_64-cpython-311/neat/channels running build_ext building 'netsim' extension creating build/temp.linux-x86_64-cpython-311 creating build/temp.linux-x86_64-cpython-311/neat creating build/temp.linux-x86_64-cpython-311/neat/tools creating build/temp.linux-x86_64-cpython-311/neat/tools/simtools creating build/temp.linux-x86_64-cpython-311/neat/tools/simtools/net gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -Ineat/tools/simtools/net -I/usr/lib64/python3.11/site-packages/numpy/core/include -Ineat/tools/simtools/net/*.h -I/usr/include/python3.11 -c neat/tools/simtools/net/Ionchannels.cc -o build/temp.linux-x86_64-cpython-311/neat/tools/simtools/net/Ionchannels.o -w -O3 -std=gnu++11 gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -Ineat/tools/simtools/net -I/usr/lib64/python3.11/site-packages/numpy/core/include -Ineat/tools/simtools/net/*.h -I/usr/include/python3.11 -c neat/tools/simtools/net/NETC.cc -o build/temp.linux-x86_64-cpython-311/neat/tools/simtools/net/NETC.o -w -O3 -std=gnu++11 gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -Ineat/tools/simtools/net -I/usr/lib64/python3.11/site-packages/numpy/core/include -Ineat/tools/simtools/net/*.h -I/usr/include/python3.11 -c neat/tools/simtools/net/Synapses.cc -o build/temp.linux-x86_64-cpython-311/neat/tools/simtools/net/Synapses.o -w -O3 -std=gnu++11 gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -Ineat/tools/simtools/net -I/usr/lib64/python3.11/site-packages/numpy/core/include -Ineat/tools/simtools/net/*.h -I/usr/include/python3.11 -c neat/tools/simtools/net/Tools.cc -o build/temp.linux-x86_64-cpython-311/neat/tools/simtools/net/Tools.o -w -O3 -std=gnu++11 gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -Ineat/tools/simtools/net -I/usr/lib64/python3.11/site-packages/numpy/core/include -Ineat/tools/simtools/net/*.h -I/usr/include/python3.11 -c neat/tools/simtools/net/netsim.cpp -o build/temp.linux-x86_64-cpython-311/neat/tools/simtools/net/netsim.o -w -O3 -std=gnu++11 g++ -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-x86_64-cpython-311/neat/tools/simtools/net/Ionchannels.o build/temp.linux-x86_64-cpython-311/neat/tools/simtools/net/NETC.o build/temp.linux-x86_64-cpython-311/neat/tools/simtools/net/Synapses.o build/temp.linux-x86_64-cpython-311/neat/tools/simtools/net/Tools.o build/temp.linux-x86_64-cpython-311/neat/tools/simtools/net/netsim.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-311/neat/netsim.cpython-311-x86_64-linux-gnu.so running build_scripts creating build/scripts-3.11 copying and adjusting neat/channels/compilechannels -> build/scripts-3.11 changing mode of build/scripts-3.11/compilechannels from 644 to 755 installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64 creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/neat copying build/lib.linux-x86_64-cpython-311/neat/netsim.cpython-311-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/neat creating build/bdist.linux-x86_64/wheel/neat/channels copying build/lib.linux-x86_64-cpython-311/neat/channels/compilechannels -> build/bdist.linux-x86_64/wheel/neat/channels creating build/bdist.linux-x86_64/wheel/neat/channels/channelcollection copying build/lib.linux-x86_64-cpython-311/neat/channels/channelcollection/__init__.py -> build/bdist.linux-x86_64/wheel/neat/channels/channelcollection copying build/lib.linux-x86_64-cpython-311/neat/channels/channelcollection/channelcollection.py -> build/bdist.linux-x86_64/wheel/neat/channels/channelcollection copying build/lib.linux-x86_64-cpython-311/neat/channels/__init__.py -> build/bdist.linux-x86_64/wheel/neat/channels copying build/lib.linux-x86_64-cpython-311/neat/channels/concmechs.py -> build/bdist.linux-x86_64/wheel/neat/channels copying build/lib.linux-x86_64-cpython-311/neat/channels/ionchannels.py -> build/bdist.linux-x86_64/wheel/neat/channels copying build/lib.linux-x86_64-cpython-311/neat/channels/writecppcode.py -> build/bdist.linux-x86_64/wheel/neat/channels copying build/lib.linux-x86_64-cpython-311/neat/channels/writemodfiles.py -> build/bdist.linux-x86_64/wheel/neat/channels creating build/bdist.linux-x86_64/wheel/neat/tools creating build/bdist.linux-x86_64/wheel/neat/tools/simtools creating build/bdist.linux-x86_64/wheel/neat/tools/simtools/net copying build/lib.linux-x86_64-cpython-311/neat/tools/simtools/net/netsim.pyx -> build/bdist.linux-x86_64/wheel/neat/tools/simtools/net copying build/lib.linux-x86_64-cpython-311/neat/tools/simtools/net/netsim.cpp -> build/bdist.linux-x86_64/wheel/neat/tools/simtools/net copying build/lib.linux-x86_64-cpython-311/neat/tools/simtools/net/Tools.cc -> build/bdist.linux-x86_64/wheel/neat/tools/simtools/net copying build/lib.linux-x86_64-cpython-311/neat/tools/simtools/net/Synapses.h -> build/bdist.linux-x86_64/wheel/neat/tools/simtools/net copying build/lib.linux-x86_64-cpython-311/neat/tools/simtools/net/Synapses.cc -> build/bdist.linux-x86_64/wheel/neat/tools/simtools/net copying build/lib.linux-x86_64-cpython-311/neat/tools/simtools/net/NETC.h -> build/bdist.linux-x86_64/wheel/neat/tools/simtools/net copying build/lib.linux-x86_64-cpython-311/neat/tools/simtools/net/NETC.cc -> build/bdist.linux-x86_64/wheel/neat/tools/simtools/net copying build/lib.linux-x86_64-cpython-311/neat/tools/simtools/net/Ionchannels.h -> build/bdist.linux-x86_64/wheel/neat/tools/simtools/net copying build/lib.linux-x86_64-cpython-311/neat/tools/simtools/net/Ionchannels.cc -> build/bdist.linux-x86_64/wheel/neat/tools/simtools/net creating build/bdist.linux-x86_64/wheel/neat/tools/simtools/neuron creating build/bdist.linux-x86_64/wheel/neat/tools/simtools/neuron/mech_storage copying build/lib.linux-x86_64-cpython-311/neat/tools/simtools/neuron/mech_storage/release_BMK.mod -> build/bdist.linux-x86_64/wheel/neat/tools/simtools/neuron/mech_storage copying build/lib.linux-x86_64-cpython-311/neat/tools/simtools/neuron/mech_storage/rel.mod -> build/bdist.linux-x86_64/wheel/neat/tools/simtools/neuron/mech_storage copying build/lib.linux-x86_64-cpython-311/neat/tools/simtools/neuron/mech_storage/gap.mod -> build/bdist.linux-x86_64/wheel/neat/tools/simtools/neuron/mech_storage copying build/lib.linux-x86_64-cpython-311/neat/tools/simtools/neuron/mech_storage/exp_AMPA_NMDA.mod -> build/bdist.linux-x86_64/wheel/neat/tools/simtools/neuron/mech_storage copying build/lib.linux-x86_64-cpython-311/neat/tools/simtools/neuron/mech_storage/epsc_double_exp.mod -> build/bdist.linux-x86_64/wheel/neat/tools/simtools/neuron/mech_storage copying build/lib.linux-x86_64-cpython-311/neat/tools/simtools/neuron/mech_storage/double_exp_AMPA_NMDA_v_from_vector.mod -> build/bdist.linux-x86_64/wheel/neat/tools/simtools/neuron/mech_storage copying build/lib.linux-x86_64-cpython-311/neat/tools/simtools/neuron/mech_storage/double_exp_AMPA_NMDA_rescaled_prox.mod -> build/bdist.linux-x86_64/wheel/neat/tools/simtools/neuron/mech_storage copying build/lib.linux-x86_64-cpython-311/neat/tools/simtools/neuron/mech_storage/double_exp_AMPA_NMDA_rescaled.mod -> build/bdist.linux-x86_64/wheel/neat/tools/simtools/neuron/mech_storage copying build/lib.linux-x86_64-cpython-311/neat/tools/simtools/neuron/mech_storage/double_exp_AMPA_NMDA_modified2.mod -> build/bdist.linux-x86_64/wheel/neat/tools/simtools/neuron/mech_storage copying build/lib.linux-x86_64-cpython-311/neat/tools/simtools/neuron/mech_storage/double_exp_AMPA_NMDA_modified.mod -> build/bdist.linux-x86_64/wheel/neat/tools/simtools/neuron/mech_storage copying build/lib.linux-x86_64-cpython-311/neat/tools/simtools/neuron/mech_storage/double_exp_AMPA_NMDA.mod -> build/bdist.linux-x86_64/wheel/neat/tools/simtools/neuron/mech_storage copying build/lib.linux-x86_64-cpython-311/neat/tools/simtools/neuron/mech_storage/conc_ca__.mod -> build/bdist.linux-x86_64/wheel/neat/tools/simtools/neuron/mech_storage copying build/lib.linux-x86_64-cpython-311/neat/tools/simtools/neuron/mech_storage/conc_ca_.mod -> build/bdist.linux-x86_64/wheel/neat/tools/simtools/neuron/mech_storage copying build/lib.linux-x86_64-cpython-311/neat/tools/simtools/neuron/mech_storage/conc_ca.mod -> build/bdist.linux-x86_64/wheel/neat/tools/simtools/neuron/mech_storage copying build/lib.linux-x86_64-cpython-311/neat/tools/simtools/neuron/mech_storage/WNClamp.mod -> build/bdist.linux-x86_64/wheel/neat/tools/simtools/neuron/mech_storage copying build/lib.linux-x86_64-cpython-311/neat/tools/simtools/neuron/mech_storage/VecStim.mod -> build/bdist.linux-x86_64/wheel/neat/tools/simtools/neuron/mech_storage copying build/lib.linux-x86_64-cpython-311/neat/tools/simtools/neuron/mech_storage/SinClamp.mod -> build/bdist.linux-x86_64/wheel/neat/tools/simtools/neuron/mech_storage copying build/lib.linux-x86_64-cpython-311/neat/tools/simtools/neuron/mech_storage/Shunt.mod -> build/bdist.linux-x86_64/wheel/neat/tools/simtools/neuron/mech_storage copying build/lib.linux-x86_64-cpython-311/neat/tools/simtools/neuron/mech_storage/OUReversal.mod -> build/bdist.linux-x86_64/wheel/neat/tools/simtools/neuron/mech_storage copying build/lib.linux-x86_64-cpython-311/neat/tools/simtools/neuron/mech_storage/OUConductance.mod -> build/bdist.linux-x86_64/wheel/neat/tools/simtools/neuron/mech_storage copying build/lib.linux-x86_64-cpython-311/neat/tools/simtools/neuron/mech_storage/OUClamp2.mod -> build/bdist.linux-x86_64/wheel/neat/tools/simtools/neuron/mech_storage copying build/lib.linux-x86_64-cpython-311/neat/tools/simtools/neuron/mech_storage/OUClamp.mod -> build/bdist.linux-x86_64/wheel/neat/tools/simtools/neuron/mech_storage copying build/lib.linux-x86_64-cpython-311/neat/tools/simtools/neuron/mech_storage/NMDA_Mg_T.mod -> build/bdist.linux-x86_64/wheel/neat/tools/simtools/neuron/mech_storage copying build/lib.linux-x86_64-cpython-311/neat/tools/simtools/neuron/mech_storage/CaPump.mod -> build/bdist.linux-x86_64/wheel/neat/tools/simtools/neuron/mech_storage copying build/lib.linux-x86_64-cpython-311/neat/tools/simtools/neuron/mech_storage/CaDyn.mod -> build/bdist.linux-x86_64/wheel/neat/tools/simtools/neuron/mech_storage copying build/lib.linux-x86_64-cpython-311/neat/tools/simtools/neuron/__init__.py -> build/bdist.linux-x86_64/wheel/neat/tools/simtools/neuron copying build/lib.linux-x86_64-cpython-311/neat/tools/simtools/neuron/neuronmodel.py -> build/bdist.linux-x86_64/wheel/neat/tools/simtools/neuron creating build/bdist.linux-x86_64/wheel/neat/tools/plottools copying build/lib.linux-x86_64-cpython-311/neat/tools/plottools/__init__.py -> build/bdist.linux-x86_64/wheel/neat/tools/plottools copying build/lib.linux-x86_64-cpython-311/neat/tools/plottools/scalebars.py -> build/bdist.linux-x86_64/wheel/neat/tools/plottools creating build/bdist.linux-x86_64/wheel/neat/tools/fittools copying build/lib.linux-x86_64-cpython-311/neat/tools/fittools/__init__.py -> build/bdist.linux-x86_64/wheel/neat/tools/fittools copying build/lib.linux-x86_64-cpython-311/neat/tools/fittools/compartmentfitter.py -> build/bdist.linux-x86_64/wheel/neat/tools/fittools copying build/lib.linux-x86_64-cpython-311/neat/tools/fittools/histogramsegmentation.py -> build/bdist.linux-x86_64/wheel/neat/tools/fittools copying build/lib.linux-x86_64-cpython-311/neat/tools/fittools/iepsolver.py -> build/bdist.linux-x86_64/wheel/neat/tools/fittools copying build/lib.linux-x86_64-cpython-311/neat/tools/fittools/zerofinding.py -> build/bdist.linux-x86_64/wheel/neat/tools/fittools copying build/lib.linux-x86_64-cpython-311/neat/tools/__init__.py -> build/bdist.linux-x86_64/wheel/neat/tools copying build/lib.linux-x86_64-cpython-311/neat/tools/kernelextraction.py -> build/bdist.linux-x86_64/wheel/neat/tools creating build/bdist.linux-x86_64/wheel/neat/trees copying build/lib.linux-x86_64-cpython-311/neat/trees/__init__.py -> build/bdist.linux-x86_64/wheel/neat/trees copying build/lib.linux-x86_64-cpython-311/neat/trees/compartmenttree.py -> build/bdist.linux-x86_64/wheel/neat/trees copying build/lib.linux-x86_64-cpython-311/neat/trees/greenstree.py -> build/bdist.linux-x86_64/wheel/neat/trees copying build/lib.linux-x86_64-cpython-311/neat/trees/morphtree.py -> build/bdist.linux-x86_64/wheel/neat/trees copying build/lib.linux-x86_64-cpython-311/neat/trees/netree.py -> build/bdist.linux-x86_64/wheel/neat/trees copying build/lib.linux-x86_64-cpython-311/neat/trees/phystree.py -> build/bdist.linux-x86_64/wheel/neat/trees copying build/lib.linux-x86_64-cpython-311/neat/trees/sovtree.py -> build/bdist.linux-x86_64/wheel/neat/trees copying build/lib.linux-x86_64-cpython-311/neat/trees/stree.py -> build/bdist.linux-x86_64/wheel/neat/trees copying build/lib.linux-x86_64-cpython-311/neat/__init__.py -> build/bdist.linux-x86_64/wheel/neat copying build/lib.linux-x86_64-cpython-311/neat/__version__.py -> build/bdist.linux-x86_64/wheel/neat running install_egg_info Copying neatdend.egg-info to build/bdist.linux-x86_64/wheel/neatdend-0.9.1-py3.11.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/neatdend-0.9.1.data creating build/bdist.linux-x86_64/wheel/neatdend-0.9.1.data/scripts copying build/scripts-3.11/compilechannels -> build/bdist.linux-x86_64/wheel/neatdend-0.9.1.data/scripts changing mode of build/bdist.linux-x86_64/wheel/neatdend-0.9.1.data/scripts/compilechannels to 755 creating build/bdist.linux-x86_64/wheel/neatdend-0.9.1.dist-info/WHEEL creating '/builddir/build/BUILD/NEAT-0.9.2/.pyproject-builddir/pip-wheel-a94mhr0n/tmp423vjuie/neatdend-0.9.1-cp311-cp311-linux_x86_64.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'neat/__init__.py' adding 'neat/__version__.py' adding 'neat/netsim.cpython-311-x86_64-linux-gnu.so' adding 'neat/channels/__init__.py' adding 'neat/channels/compilechannels' adding 'neat/channels/concmechs.py' adding 'neat/channels/ionchannels.py' adding 'neat/channels/writecppcode.py' adding 'neat/channels/writemodfiles.py' adding 'neat/channels/channelcollection/__init__.py' adding 'neat/channels/channelcollection/channelcollection.py' adding 'neat/tools/__init__.py' adding 'neat/tools/kernelextraction.py' adding 'neat/tools/fittools/__init__.py' adding 'neat/tools/fittools/compartmentfitter.py' adding 'neat/tools/fittools/histogramsegmentation.py' adding 'neat/tools/fittools/iepsolver.py' adding 'neat/tools/fittools/zerofinding.py' adding 'neat/tools/plottools/__init__.py' adding 'neat/tools/plottools/scalebars.py' adding 'neat/tools/simtools/net/Ionchannels.cc' adding 'neat/tools/simtools/net/Ionchannels.h' adding 'neat/tools/simtools/net/NETC.cc' adding 'neat/tools/simtools/net/NETC.h' adding 'neat/tools/simtools/net/Synapses.cc' adding 'neat/tools/simtools/net/Synapses.h' adding 'neat/tools/simtools/net/Tools.cc' adding 'neat/tools/simtools/net/netsim.cpp' adding 'neat/tools/simtools/net/netsim.pyx' adding 'neat/tools/simtools/neuron/__init__.py' adding 'neat/tools/simtools/neuron/neuronmodel.py' adding 'neat/tools/simtools/neuron/mech_storage/CaDyn.mod' adding 'neat/tools/simtools/neuron/mech_storage/CaPump.mod' adding 'neat/tools/simtools/neuron/mech_storage/NMDA_Mg_T.mod' adding 'neat/tools/simtools/neuron/mech_storage/OUClamp.mod' adding 'neat/tools/simtools/neuron/mech_storage/OUClamp2.mod' adding 'neat/tools/simtools/neuron/mech_storage/OUConductance.mod' adding 'neat/tools/simtools/neuron/mech_storage/OUReversal.mod' adding 'neat/tools/simtools/neuron/mech_storage/Shunt.mod' adding 'neat/tools/simtools/neuron/mech_storage/SinClamp.mod' adding 'neat/tools/simtools/neuron/mech_storage/VecStim.mod' adding 'neat/tools/simtools/neuron/mech_storage/WNClamp.mod' adding 'neat/tools/simtools/neuron/mech_storage/conc_ca.mod' adding 'neat/tools/simtools/neuron/mech_storage/conc_ca_.mod' adding 'neat/tools/simtools/neuron/mech_storage/conc_ca__.mod' adding 'neat/tools/simtools/neuron/mech_storage/double_exp_AMPA_NMDA.mod' adding 'neat/tools/simtools/neuron/mech_storage/double_exp_AMPA_NMDA_modified.mod' adding 'neat/tools/simtools/neuron/mech_storage/double_exp_AMPA_NMDA_modified2.mod' adding 'neat/tools/simtools/neuron/mech_storage/double_exp_AMPA_NMDA_rescaled.mod' adding 'neat/tools/simtools/neuron/mech_storage/double_exp_AMPA_NMDA_rescaled_prox.mod' adding 'neat/tools/simtools/neuron/mech_storage/double_exp_AMPA_NMDA_v_from_vector.mod' adding 'neat/tools/simtools/neuron/mech_storage/epsc_double_exp.mod' adding 'neat/tools/simtools/neuron/mech_storage/exp_AMPA_NMDA.mod' adding 'neat/tools/simtools/neuron/mech_storage/gap.mod' adding 'neat/tools/simtools/neuron/mech_storage/rel.mod' adding 'neat/tools/simtools/neuron/mech_storage/release_BMK.mod' adding 'neat/trees/__init__.py' adding 'neat/trees/compartmenttree.py' adding 'neat/trees/greenstree.py' adding 'neat/trees/morphtree.py' adding 'neat/trees/netree.py' adding 'neat/trees/phystree.py' adding 'neat/trees/sovtree.py' adding 'neat/trees/stree.py' adding 'neatdend-0.9.1.data/scripts/compilechannels' adding 'neatdend-0.9.1.dist-info/LICENSE.txt' adding 'neatdend-0.9.1.dist-info/METADATA' adding 'neatdend-0.9.1.dist-info/WHEEL' adding 'neatdend-0.9.1.dist-info/top_level.txt' adding 'neatdend-0.9.1.dist-info/RECORD' removing build/bdist.linux-x86_64/wheel Building wheel for neatdend (pyproject.toml): finished with status 'done' Created wheel for neatdend: filename=neatdend-0.9.1-cp311-cp311-linux_x86_64.whl size=1434655 sha256=1c3301aba4ac8ccac7b8a2b52a32c6458f07670293aa821c149cd1bdc8674942 Stored in directory: /builddir/.cache/pip/wheels/fc/7f/d5/a3f94d5955f85b0fd3324ef2bbf715995071ca330cedaa3a4a Successfully built neatdend + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.0IloLR + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/python-neatdend-0.9.2-11.fc39.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/python-neatdend-0.9.2-11.fc39.x86_64 ++ dirname /builddir/build/BUILDROOT/python-neatdend-0.9.2-11.fc39.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/python-neatdend-0.9.2-11.fc39.x86_64 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd NEAT-0.9.2 ++ ls /builddir/build/BUILD/NEAT-0.9.2/pyproject-wheeldir/neatdend-0.9.1-cp311-cp311-linux_x86_64.whl ++ sed -E 's/([^-]+)-([^-]+)-.+\.whl/\1==\2/' ++ xargs basename --multiple + specifier=neatdend==0.9.1 + TMPDIR=/builddir/build/BUILD/NEAT-0.9.2/.pyproject-builddir + /usr/bin/python3 -m pip install --root /builddir/build/BUILDROOT/python-neatdend-0.9.2-11.fc39.x86_64 --prefix /usr --no-deps --disable-pip-version-check --progress-bar off --verbose --ignore-installed --no-warn-script-location --no-index --no-cache-dir --find-links /builddir/build/BUILD/NEAT-0.9.2/pyproject-wheeldir neatdend==0.9.1 Using pip 22.3.1 from /usr/lib/python3.11/site-packages/pip (python 3.11) Looking in links: /builddir/build/BUILD/NEAT-0.9.2/pyproject-wheeldir Processing ./pyproject-wheeldir/neatdend-0.9.1-cp311-cp311-linux_x86_64.whl Installing collected packages: neatdend Successfully installed neatdend-0.9.1 + '[' -d /builddir/build/BUILDROOT/python-neatdend-0.9.2-11.fc39.x86_64/usr/bin ']' + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP /builddir/build/BUILDROOT/python-neatdend-0.9.2-11.fc39.x86_64/usr/bin/compilechannels /builddir/build/BUILDROOT/python-neatdend-0.9.2-11.fc39.x86_64/usr/bin/compilechannels: updating + rm -rfv /builddir/build/BUILDROOT/python-neatdend-0.9.2-11.fc39.x86_64/usr/bin/__pycache__ + rm -f /builddir/build/BUILD/python-neatdend-0.9.2-11.fc39.x86_64-pyproject-ghost-distinfo + site_dirs=() + '[' -d /builddir/build/BUILDROOT/python-neatdend-0.9.2-11.fc39.x86_64/usr/lib/python3.11/site-packages ']' + '[' /builddir/build/BUILDROOT/python-neatdend-0.9.2-11.fc39.x86_64/usr/lib64/python3.11/site-packages '!=' /builddir/build/BUILDROOT/python-neatdend-0.9.2-11.fc39.x86_64/usr/lib/python3.11/site-packages ']' + '[' -d /builddir/build/BUILDROOT/python-neatdend-0.9.2-11.fc39.x86_64/usr/lib64/python3.11/site-packages ']' + site_dirs+=("/usr/lib64/python3.11/site-packages") + for site_dir in ${site_dirs[@]} + for distinfo in /builddir/build/BUILDROOT/python-neatdend-0.9.2-11.fc39.x86_64$site_dir/*.dist-info + echo '%ghost /usr/lib64/python3.11/site-packages/neatdend-0.9.1.dist-info' + sed -i s/pip/rpm/ /builddir/build/BUILDROOT/python-neatdend-0.9.2-11.fc39.x86_64/usr/lib64/python3.11/site-packages/neatdend-0.9.1.dist-info/INSTALLER + PYTHONPATH=/usr/lib/rpm/redhat + /usr/bin/python3 -B /usr/lib/rpm/redhat/pyproject_preprocess_record.py --buildroot /builddir/build/BUILDROOT/python-neatdend-0.9.2-11.fc39.x86_64 --record /builddir/build/BUILDROOT/python-neatdend-0.9.2-11.fc39.x86_64/usr/lib64/python3.11/site-packages/neatdend-0.9.1.dist-info/RECORD --output /builddir/build/BUILD/python-neatdend-0.9.2-11.fc39.x86_64-pyproject-record + rm -fv /builddir/build/BUILDROOT/python-neatdend-0.9.2-11.fc39.x86_64/usr/lib64/python3.11/site-packages/neatdend-0.9.1.dist-info/RECORD removed '/builddir/build/BUILDROOT/python-neatdend-0.9.2-11.fc39.x86_64/usr/lib64/python3.11/site-packages/neatdend-0.9.1.dist-info/RECORD' + rm -fv /builddir/build/BUILDROOT/python-neatdend-0.9.2-11.fc39.x86_64/usr/lib64/python3.11/site-packages/neatdend-0.9.1.dist-info/REQUESTED removed '/builddir/build/BUILDROOT/python-neatdend-0.9.2-11.fc39.x86_64/usr/lib64/python3.11/site-packages/neatdend-0.9.1.dist-info/REQUESTED' ++ wc -l /builddir/build/BUILD/python-neatdend-0.9.2-11.fc39.x86_64-pyproject-ghost-distinfo ++ cut -f1 '-d ' + lines=1 + '[' 1 -ne 1 ']' + /usr/bin/python3 /usr/lib/rpm/redhat/pyproject_save_files.py --output-files /builddir/build/BUILD/python-neatdend-0.9.2-11.fc39.x86_64-pyproject-files --output-modules /builddir/build/BUILD/python-neatdend-0.9.2-11.fc39.x86_64-pyproject-modules --buildroot /builddir/build/BUILDROOT/python-neatdend-0.9.2-11.fc39.x86_64 --sitelib /usr/lib/python3.11/site-packages --sitearch /usr/lib64/python3.11/site-packages --python-version 3.11 --pyproject-record /builddir/build/BUILD/python-neatdend-0.9.2-11.fc39.x86_64-pyproject-record --prefix /usr neat + /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 0.9.2-11.fc39 --unique-debug-suffix -0.9.2-11.fc39.x86_64 --unique-debug-src-base python-neatdend-0.9.2-11.fc39.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/NEAT-0.9.2 extracting debug info from /builddir/build/BUILDROOT/python-neatdend-0.9.2-11.fc39.x86_64/usr/lib64/python3.11/site-packages/neat/netsim.cpython-311-x86_64-linux-gnu.so original debug info size: 2744kB, size after compression: 2600kB /usr/bin/sepdebugcrcfix: Updated 1 CRC32s, 0 CRC32s did match. 1861 blocks + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs *** WARNING: ./usr/src/debug/python-neatdend-0.9.2-11.fc39.x86_64/neat/tools/simtools/net/Tools.cc is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/python-neatdend-0.9.2-11.fc39.x86_64/neat/tools/simtools/net/Synapses.h is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/python-neatdend-0.9.2-11.fc39.x86_64/neat/tools/simtools/net/Synapses.cc is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/python-neatdend-0.9.2-11.fc39.x86_64/neat/tools/simtools/net/NETC.h is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/python-neatdend-0.9.2-11.fc39.x86_64/neat/tools/simtools/net/NETC.cc is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.11/site-packages/neat/tools/simtools/neuron/mech_storage/release_BMK.mod is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.11/site-packages/neat/tools/simtools/neuron/mech_storage/rel.mod is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.11/site-packages/neat/tools/simtools/neuron/mech_storage/gap.mod is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.11/site-packages/neat/tools/simtools/neuron/mech_storage/exp_AMPA_NMDA.mod is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.11/site-packages/neat/tools/simtools/neuron/mech_storage/epsc_double_exp.mod is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.11/site-packages/neat/tools/simtools/neuron/mech_storage/double_exp_AMPA_NMDA.mod is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.11/site-packages/neat/tools/simtools/neuron/mech_storage/conc_ca__.mod is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.11/site-packages/neat/tools/simtools/neuron/mech_storage/conc_ca_.mod is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.11/site-packages/neat/tools/simtools/neuron/mech_storage/conc_ca.mod is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.11/site-packages/neat/tools/simtools/neuron/mech_storage/WNClamp.mod is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.11/site-packages/neat/tools/simtools/neuron/mech_storage/VecStim.mod is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.11/site-packages/neat/tools/simtools/neuron/mech_storage/Shunt.mod is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.11/site-packages/neat/tools/simtools/neuron/mech_storage/OUConductance.mod is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.11/site-packages/neat/tools/simtools/neuron/mech_storage/OUClamp2.mod is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.11/site-packages/neat/tools/simtools/neuron/mech_storage/OUClamp.mod is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.11/site-packages/neat/tools/simtools/neuron/mech_storage/NMDA_Mg_T.mod is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.11/site-packages/neat/tools/simtools/net/netsim.pyx is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.11/site-packages/neat/tools/simtools/net/Tools.cc is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.11/site-packages/neat/tools/simtools/net/Synapses.h is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.11/site-packages/neat/tools/simtools/net/Synapses.cc is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.11/site-packages/neat/tools/simtools/net/NETC.h is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.11/site-packages/neat/tools/simtools/net/NETC.cc is executable but has no shebang, removing executable bit + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2 Bytecompiling .py files below /builddir/build/BUILDROOT/python-neatdend-0.9.2-11.fc39.x86_64/usr/lib/debug/usr/lib64/python3.11 using python3.11 Bytecompiling .py files below /builddir/build/BUILDROOT/python-neatdend-0.9.2-11.fc39.x86_64/usr/lib64/python3.11 using python3.11 + /usr/lib/rpm/redhat/brp-python-hardlink Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.KlR4dp + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd NEAT-0.9.2 + mkdir testdir + pushd testdir ~/build/BUILD/NEAT-0.9.2/testdir ~/build/BUILD/NEAT-0.9.2 + PYTHONPATH=/builddir/build/BUILDROOT/python-neatdend-0.9.2-11.fc39.x86_64//usr/lib/python3.11/site-packages:/builddir/build/BUILDROOT/python-neatdend-0.9.2-11.fc39.x86_64//usr/lib64/python3.11/site-packages + /builddir/build/BUILDROOT/python-neatdend-0.9.2-11.fc39.x86_64//usr/bin/compilechannels default Warning: no DISPLAY environment variable. --No graphics will be displayed. /builddir/build/BUILDROOT/python-neatdend-0.9.2-11.fc39.x86_64/usr/lib64/python3.11/site-packages/neat/tools/simtools/neuron Mod files: "mech/mech//CaDyn.mod" "mech/mech//CaPump.mod" "mech/mech//IKv3_1.mod" "mech/mech//INa_Ta.mod" "mech/mech//ISK.mod" "mech/mech//ITestChannel.mod" "mech/mech//ITestChannel2.mod" "mech/mech//Ih.mod" "mech/mech//NMDA_Mg_T.mod" "mech/mech//OUClamp.mod" "mech/mech//OUClamp2.mod" "mech/mech//OUConductance.mod" "mech/mech//OUReversal.mod" "mech/mech//Shunt.mod" "mech/mech//SinClamp.mod" "mech/mech//VecStim.mod" "mech/mech//WNClamp.mod" "mech/mech//conc_ca.mod" "mech/mech//conc_ca_.mod" "mech/mech//conc_ca__.mod" "mech/mech//double_exp_AMPA_NMDA.mod" "mech/mech//double_exp_AMPA_NMDA_modified.mod" "mech/mech//double_exp_AMPA_NMDA_modified2.mod" "mech/mech//double_exp_AMPA_NMDA_rescaled.mod" "mech/mech//double_exp_AMPA_NMDA_rescaled_prox.mod" "mech/mech//double_exp_AMPA_NMDA_v_from_vector.mod" "mech/mech//epsc_double_exp.mod" "mech/mech//exp_AMPA_NMDA.mod" "mech/mech//gap.mod" "mech/mech//rel.mod" "mech/mech//release_BMK.mod" Creating 'x86_64' directory for .o files. -> Compiling mod_func.cpp -> NMODL ../mech//CaDyn.mod -> NMODL ../mech//CaPump.mod Translating CaDyn.mod into /builddir/build/BUILDROOT/python-neatdend-0.9.2-11.fc39.x86_64/usr/lib64/python3.11/site-packages/neat/tools/simtools/neuron/x86_64/CaDyn.c Thread Safe -> NMODL ../mech//IKv3_1.mod -> NMODL ../mech//INa_Ta.mod Translating CaPump.mod into /builddir/build/BUILDROOT/python-neatdend-0.9.2-11.fc39.x86_64/usr/lib64/python3.11/site-packages/neat/tools/simtools/neuron/x86_64/CaPump.c Thread Safe Translating IKv3_1.mod into /builddir/build/BUILDROOT/python-neatdend-0.9.2-11.fc39.x86_64/usr/lib64/python3.11/site-packages/neat/tools/simtools/neuron/x86_64/IKv3_1.c Thread Safe Translating INa_Ta.mod into /builddir/build/BUILDROOT/python-neatdend-0.9.2-11.fc39.x86_64/usr/lib64/python3.11/site-packages/neat/tools/simtools/neuron/x86_64/INa_Ta.c Thread Safe -> NMODL ../mech//ISK.mod -> NMODL ../mech//ITestChannel.mod Translating ISK.mod into /builddir/build/BUILDROOT/python-neatdend-0.9.2-11.fc39.x86_64/usr/lib64/python3.11/site-packages/neat/tools/simtools/neuron/x86_64/ISK.c Thread Safe -> NMODL ../mech//ITestChannel2.mod -> NMODL ../mech//Ih.mod Translating ITestChannel.mod into /builddir/build/BUILDROOT/python-neatdend-0.9.2-11.fc39.x86_64/usr/lib64/python3.11/site-packages/neat/tools/simtools/neuron/x86_64/ITestChannel.c Thread Safe Translating ITestChannel2.mod into /builddir/build/BUILDROOT/python-neatdend-0.9.2-11.fc39.x86_64/usr/lib64/python3.11/site-packages/neat/tools/simtools/neuron/x86_64/ITestChannel2.c Thread Safe -> NMODL ../mech//NMDA_Mg_T.mod -> NMODL ../mech//OUClamp.mod Translating Ih.mod into /builddir/build/BUILDROOT/python-neatdend-0.9.2-11.fc39.x86_64/usr/lib64/python3.11/site-packages/neat/tools/simtools/neuron/x86_64/Ih.c Thread Safe Translating NMDA_Mg_T.mod into /builddir/build/BUILDROOT/python-neatdend-0.9.2-11.fc39.x86_64/usr/lib64/python3.11/site-packages/neat/tools/simtools/neuron/x86_64/NMDA_Mg_T.c Notice: Use of POINTER is not thread safe. NEURON's CVode method ignores conservation Notice: Assignment to the GLOBAL variable, "rmd2u", is not thread safe Notice: Assignment to the GLOBAL variable, "rmd2b", is not thread safe Notice: Assignment to the GLOBAL variable, "rmd1u", is not thread safe Notice: Assignment to the GLOBAL variable, "rmd1b", is not thread safe -> NMODL ../mech//OUClamp2.mod -> NMODL ../mech//OUConductance.mod Translating OUClamp.mod into /builddir/build/BUILDROOT/python-neatdend-0.9.2-11.fc39.x86_64/usr/lib64/python3.11/site-packages/neat/tools/simtools/neuron/x86_64/OUClamp.c Translating OUClamp2.mod into /builddir/build/BUILDROOT/python-neatdend-0.9.2-11.fc39.x86_64/usr/lib64/python3.11/site-packages/neat/tools/simtools/neuron/x86_64/OUClamp2.c Notice: set_seed is not thread safe Thread Safe Notice: normrand is not thread safe Notice: This mechanism cannot be used with CVODE Translating OUConductance.mod into /builddir/build/BUILDROOT/python-neatdend-0.9.2-11.fc39.x86_64/usr/lib64/python3.11/site-packages/neat/tools/simtools/neuron/x86_64/OUConductance.c Notice: set_seed is not thread safe -> NMODL ../mech//OUReversal.mod Notice: normrand is not thread safe Notice: This mechanism cannot be used with CVODE -> NMODL ../mech//Shunt.mod -> NMODL ../mech//SinClamp.mod Translating OUReversal.mod into /builddir/build/BUILDROOT/python-neatdend-0.9.2-11.fc39.x86_64/usr/lib64/python3.11/site-packages/neat/tools/simtools/neuron/x86_64/OUReversal.c Notice: set_seed is not thread safe Notice: normrand is not thread safe Translating Shunt.mod into /builddir/build/BUILDROOT/python-neatdend-0.9.2-11.fc39.x86_64/usr/lib64/python3.11/site-packages/neaNotice: This mechanism cannot be used with CVODE t/tools/simtools/neuron/x86_64/Shunt.c Thread Safe -> NMODL ../mech//VecStim.mod Translating SinClamp.mod into /builddir/build/BUILDROOT/python-neatdend-0.9.2-11.fc39.x86_64/usr/lib64/python3.11/site-packages/neat/tools/simtools/neuron/x86_64/SinClamp.c -> NMODL ../mech//WNClamp.mod Thread Safe -> NMODL ../mech//conc_ca.mod Translating VecStim.mod into /builddir/build/BUILDROOT/python-neatdend-0.9.2-11.fc39.x86_64/usr/lib64/python3.11/site-packages/neat/tools/simtools/neuron/x86_64/VecStim.c Notice: VERBATIM blocks are not thread safe -> NMODL ../mech//conc_ca_.mod Translating WNClamp.mod into /builddir/build/BUILDROOT/python-neatdend-0.9.2-11.fc39.x86_64/usr/lib64/python3.11/site-packages/neat/tools/simtools/neuron/x86_64/WNClamp.c Thread Safe -> NMODL ../mech//conc_ca__.mod Translating conc_ca.mod into /builddir/build/BUILDROOT/python-neatdend-0.9.2-11.fc39.x86_64/usr/lib64/python3.11/site-packages/neat/tools/simtools/neuron/x86_64/conc_ca.c Translating conc_ca_.mod into /builddir/build/BUILDROOT/python-neatdend-0.9.2-11.fc39.x86_64/usr/lib64/python3.11/site-packages/neat/tools/simtools/neuron/x86_64/conc_ca_.c Thread Safe Thread Safe -> NMODL ../mech//double_exp_AMPA_NMDA.mod -> NMODL ../mech//double_exp_AMPA_NMDA_modified.mod Translating double_exp_AMPA_NMDA.mod into /builddir/build/BUILDROOT/python-neatdend-0.9.2-11.fc39.x86_64/usr/lib64/python3.11/site-packages/neat/tools/simtools/neuron/x86_64/double_exp_AMPA_NMDA.c Translating conc_ca__.mod into /builddir/build/BUILDROOT/python-neatdend-0.9.2-11.fc39.x86_64/usr/lib64/python3.11/site-packages/neat/tools/simtools/neuron/x86_64/conc_ca__.c Thread Safe Thread Safe -> NMODL ../mech//double_exp_AMPA_NMDA_modified2.mod -> NMODL ../mech//double_exp_AMPA_NMDA_rescaled.mod Translating double_exp_AMPA_NMDA_modified.mod into /builddir/build/BUILDROOT/python-neatdend-0.9.2-11.fc39.x86_64/usr/lib64/python3.11/site-packages/neat/tools/simtools/neuron/x86_64/double_exp_AMPA_NMDA_modified.c Thread Safe -> NMODL ../mech//double_exp_AMPA_NMDA_rescaled_prox.mod Translating double_exp_AMPA_NMDA_modified2.mod into /builddir/build/BUILDROOT/python-neatdend-0.9.2-11.fc39.x86_64/usr/lib64/python3.11/site-packages/neat/tools/simtools/neuron/x86_64/double_exp_AMPA_NMDA_modified2.c Thread Safe Translating double_exp_AMPA_NMDA_rescaled.mod into /builddir/build/BUILDROOT/python-neatdend-0.9.2-11.fc39.x86_64/usr/lib64/python3.11/site-packages/neat/tools/simtools/neuron/x86_64/double_exp_AMPA_NMDA_rescaled.c -> NMODL ../mech//double_exp_AMPA_NMDA_v_from_vector.mod Thread Safe -> NMODL ../mech//epsc_double_exp.mod Translating double_exp_AMPA_NMDA_rescaled_prox.mod into /builddir/build/BUILDROOT/python-neatdend-0.9.2-11.fc39.x86_64/usr/lib64/python3.11/site-packages/neat/tools/simtools/neuron/x86_64/double_exp_AMPA_NMDA_rescaled_prox.c -> NMODL ../mech//exp_AMPA_NMDA.mod Thread Safe Translating double_exp_AMPA_NMDA_v_from_vector.mod into /builddir/build/BUILDROOT/python-neatdend-0.9.2-11.fc39.x86_64/usr/lib64/python3.11/site-packages/neat/tools/simtools/neuron/x86_64/double_exp_AMPA_NMDA_v_from_vector.c Thread Safe Translating epsc_double_exp.mod into /builddir/build/BUILDROOT/python-neatdend-0.9.2-11.fc39.x86_64/usr/lib64/python3.11/site-packages/neat/tools/simtools/neuron/x86_64/epsc_double_exp.c -> NMODL ../mech//gap.mod Thread Safe -> NMODL ../mech//rel.mod Translating exp_AMPA_NMDA.mod into /builddir/build/BUILDROOT/python-neatdend-0.9.2-11.fc39.x86_64/usr/lib64/python3.11/site-packages/neat/tools/simtools/neuron/x86_64/exp_AMPA_NMDA.c Thread Safe Translating gap.mod into /builddir/build/BUILDROOT/python-neatdend-0.9.2-11.fc39.x86_64/usr/lib64/python3.11/site-packages/neat/ -> NMODL ../mech//release_BMK.mod tools/simtools/neuron/x86_64/gap.c Notice: Use of POINTER is not thread safe. -> Compiling CaDyn.c Translating rel.mod into /builddir/build/BUILDROOT/python-neatdend-0.9.2-11.fc39.x86_64/usr/lib64/python3.11/site-packages/neat/tools/simtools/neuron/x86_64/rel.c Translating release_BMK.mod into /builddir/build/BUILDROOT/python-neatdend-0.9.2-11.fc39.x86_64/usr/lib64/python3.11/site-packages/neat/tools/simtools/neuron/x86_64/release_BMK.c Thread Safe Thread Safe -> Compiling CaPump.c -> Compiling IKv3_1.c -> Compiling INa_Ta.c -> Compiling ISK.c -> Compiling ITestChannel.c -> Compiling ITestChannel2.c -> Compiling Ih.c -> Compiling NMDA_Mg_T.c -> Compiling OUClamp.c -> Compiling OUClamp2.c -> Compiling OUConductance.c -> Compiling OUReversal.c -> Compiling Shunt.c -> Compiling SinClamp.c -> Compiling VecStim.c -> Compiling WNClamp.c -> Compiling conc_ca.c -> Compiling conc_ca_.c -> Compiling conc_ca__.c -> Compiling double_exp_AMPA_NMDA.c -> Compiling double_exp_AMPA_NMDA_modified.c -> Compiling double_exp_AMPA_NMDA_modified2.c -> Compiling double_exp_AMPA_NMDA_rescaled.c -> Compiling double_exp_AMPA_NMDA_rescaled_prox.c -> Compiling double_exp_AMPA_NMDA_v_from_vector.c -> Compiling epsc_double_exp.c -> Compiling exp_AMPA_NMDA.c -> Compiling gap.c -> Compiling rel.c -> Compiling release_BMK.c => LINKING shared library ./libnrnmech.so => LINKING executable ./special LDFLAGS are: -lreadline -lcurses -lform -lpython3.11 -lX11 -lXext Successfully created x86_64/special --- writing channels from /builddir/build/BUILDROOT/python-neatdend-0.9.2-11.fc39.x86_64/usr/lib64/python3.11/site-packages/neat/channels/channelcollection/ to /builddir/build/BUILDROOT/python-neatdend-0.9.2-11.fc39.x86_64/usr/lib64/python3.11/site-packages/neat/tools/simtools/neuron/mech/ Reading channels from: channelcollection - write .mod file for: Kv3_1 - write .mod file for: Na_Ta - write .mod file for: SK - write .mod file for: TestChannel - write .mod file for: TestChannel2 - write .mod file for: h Reading channels from: __init__ + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + PATH=/builddir/build/BUILDROOT/python-neatdend-0.9.2-11.fc39.x86_64/usr/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin + PYTHONPATH=/builddir/build/BUILDROOT/python-neatdend-0.9.2-11.fc39.x86_64/usr/lib64/python3.11/site-packages:/builddir/build/BUILDROOT/python-neatdend-0.9.2-11.fc39.x86_64/usr/lib/python3.11/site-packages + PYTHONDONTWRITEBYTECODE=1 + PYTEST_ADDOPTS=' --ignore=/builddir/build/BUILD/NEAT-0.9.2/.pyproject-builddir' + PYTEST_XDIST_AUTO_NUM_WORKERS=2 + /usr/bin/pytest ../ ============================= test session starts ============================== platform linux -- Python 3.11.2, pytest-7.2.1, pluggy-1.0.0 rootdir: /builddir/build/BUILD/NEAT-0.9.2 collected 80 items ../tests/test_cnet.py ..... [ 6%] ../tests/test_compartmentfitter.py .......... [ 18%] ../tests/test_compartmenttree.py ......... [ 30%] ../tests/test_greenstree.py .. [ 32%] ../tests/test_ionchannels.py .... [ 37%] ../tests/test_morphtree.py .................. [ 60%] ../tests/test_net.py ..... [ 66%] ../tests/test_neurontree.py ....... [ 75%] ../tests/test_phystree.py .... [ 80%] ../tests/test_sovtree.py ... [ 83%] ../tests/test_stree.py ............. [100%] =============================== warnings summary =============================== tests/test_cnet.py: 1 warning tests/test_compartmentfitter.py: 70 warnings tests/test_neurontree.py: 240 warnings /builddir/build/BUILDROOT/python-neatdend-0.9.2-11.fc39.x86_64/usr/lib64/python3.11/site-packages/neat/tools/simtools/neuron/neuronmodel.py:763: DeprecationWarning: neuron.run(tstop) is deprecated; use h.stdinit() and h.continuerun(tstop) instead neuron.run(t_max + self.t_calibrate) tests/test_net.py::TestNET::testKernels /builddir/build/BUILDROOT/python-neatdend-0.9.2-11.fc39.x86_64/usr/lib64/python3.11/site-packages/neat/trees/netree.py:155: RuntimeWarning: invalid value encountered in divide return np.sum(self.c[:,None]*1e3 / (self.a[:,None]*1e3 + s_arr[None,:]), 0) -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ================= 80 passed, 312 warnings in 69.12s (0:01:09) ================== + popd ~/build/BUILD/NEAT-0.9.2 + rm -rf find /builddir/build/BUILDROOT/python-neatdend-0.9.2-11.fc39.x86_64//usr/lib64/python3.11/site-packages/neat/tools/simtools/neuron/mech/CaDyn.mod /builddir/build/BUILDROOT/python-neatdend-0.9.2-11.fc39.x86_64//usr/lib64/python3.11/site-packages/neat/tools/simtools/neuron/mech/CaPump.mod /builddir/build/BUILDROOT/python-neatdend-0.9.2-11.fc39.x86_64//usr/lib64/python3.11/site-packages/neat/tools/simtools/neuron/mech/IKv3_1.mod /builddir/build/BUILDROOT/python-neatdend-0.9.2-11.fc39.x86_64//usr/lib64/python3.11/site-packages/neat/tools/simtools/neuron/mech/INa_Ta.mod /builddir/build/BUILDROOT/python-neatdend-0.9.2-11.fc39.x86_64//usr/lib64/python3.11/site-packages/neat/tools/simtools/neuron/mech/ISK.mod /builddir/build/BUILDROOT/python-neatdend-0.9.2-11.fc39.x86_64//usr/lib64/python3.11/site-packages/neat/tools/simtools/neuron/mech/ITestChannel.mod /builddir/build/BUILDROOT/python-neatdend-0.9.2-11.fc39.x86_64//usr/lib64/python3.11/site-packages/neat/tools/simtools/neuron/mech/ITestChannel2.mod /builddir/build/BUILDROOT/python-neatdend-0.9.2-11.fc39.x86_64//usr/lib64/python3.11/site-packages/neat/tools/simtools/neuron/mech/Ih.mod /builddir/build/BUILDROOT/python-neatdend-0.9.2-11.fc39.x86_64//usr/lib64/python3.11/site-packages/neat/tools/simtools/neuron/mech/NMDA_Mg_T.mod /builddir/build/BUILDROOT/python-neatdend-0.9.2-11.fc39.x86_64//usr/lib64/python3.11/site-packages/neat/tools/simtools/neuron/mech/OUClamp.mod /builddir/build/BUILDROOT/python-neatdend-0.9.2-11.fc39.x86_64//usr/lib64/python3.11/site-packages/neat/tools/simtools/neuron/mech/OUClamp2.mod /builddir/build/BUILDROOT/python-neatdend-0.9.2-11.fc39.x86_64//usr/lib64/python3.11/site-packages/neat/tools/simtools/neuron/mech/OUConductance.mod /builddir/build/BUILDROOT/python-neatdend-0.9.2-11.fc39.x86_64//usr/lib64/python3.11/site-packages/neat/tools/simtools/neuron/mech/OUReversal.mod /builddir/build/BUILDROOT/python-neatdend-0.9.2-11.fc39.x86_64//usr/lib64/python3.11/site-packages/neat/tools/simtools/neuron/mech/Shunt.mod /builddir/build/BUILDROOT/python-neatdend-0.9.2-11.fc39.x86_64//usr/lib64/python3.11/site-packages/neat/tools/simtools/neuron/mech/SinClamp.mod /builddir/build/BUILDROOT/python-neatdend-0.9.2-11.fc39.x86_64//usr/lib64/python3.11/site-packages/neat/tools/simtools/neuron/mech/VecStim.mod /builddir/build/BUILDROOT/python-neatdend-0.9.2-11.fc39.x86_64//usr/lib64/python3.11/site-packages/neat/tools/simtools/neuron/mech/WNClamp.mod /builddir/build/BUILDROOT/python-neatdend-0.9.2-11.fc39.x86_64//usr/lib64/python3.11/site-packages/neat/tools/simtools/neuron/mech/conc_ca.mod /builddir/build/BUILDROOT/python-neatdend-0.9.2-11.fc39.x86_64//usr/lib64/python3.11/site-packages/neat/tools/simtools/neuron/mech/conc_ca_.mod /builddir/build/BUILDROOT/python-neatdend-0.9.2-11.fc39.x86_64//usr/lib64/python3.11/site-packages/neat/tools/simtools/neuron/mech/conc_ca__.mod /builddir/build/BUILDROOT/python-neatdend-0.9.2-11.fc39.x86_64//usr/lib64/python3.11/site-packages/neat/tools/simtools/neuron/mech/double_exp_AMPA_NMDA.mod /builddir/build/BUILDROOT/python-neatdend-0.9.2-11.fc39.x86_64//usr/lib64/python3.11/site-packages/neat/tools/simtools/neuron/mech/double_exp_AMPA_NMDA_modified.mod /builddir/build/BUILDROOT/python-neatdend-0.9.2-11.fc39.x86_64//usr/lib64/python3.11/site-packages/neat/tools/simtools/neuron/mech/double_exp_AMPA_NMDA_modified2.mod /builddir/build/BUILDROOT/python-neatdend-0.9.2-11.fc39.x86_64//usr/lib64/python3.11/site-packages/neat/tools/simtools/neuron/mech/double_exp_AMPA_NMDA_rescaled.mod /builddir/build/BUILDROOT/python-neatdend-0.9.2-11.fc39.x86_64//usr/lib64/python3.11/site-packages/neat/tools/simtools/neuron/mech/double_exp_AMPA_NMDA_rescaled_prox.mod /builddir/build/BUILDROOT/python-neatdend-0.9.2-11.fc39.x86_64//usr/lib64/python3.11/site-packages/neat/tools/simtools/neuron/mech/double_exp_AMPA_NMDA_v_from_vector.mod /builddir/build/BUILDROOT/python-neatdend-0.9.2-11.fc39.x86_64//usr/lib64/python3.11/site-packages/neat/tools/simtools/neuron/mech/epsc_double_exp.mod /builddir/build/BUILDROOT/python-neatdend-0.9.2-11.fc39.x86_64//usr/lib64/python3.11/site-packages/neat/tools/simtools/neuron/mech/exp_AMPA_NMDA.mod /builddir/build/BUILDROOT/python-neatdend-0.9.2-11.fc39.x86_64//usr/lib64/python3.11/site-packages/neat/tools/simtools/neuron/mech/gap.mod /builddir/build/BUILDROOT/python-neatdend-0.9.2-11.fc39.x86_64//usr/lib64/python3.11/site-packages/neat/tools/simtools/neuron/mech/rel.mod /builddir/build/BUILDROOT/python-neatdend-0.9.2-11.fc39.x86_64//usr/lib64/python3.11/site-packages/neat/tools/simtools/neuron/mech/release_BMK.mod + rm -rf find /builddir/build/BUILDROOT/python-neatdend-0.9.2-11.fc39.x86_64//usr/lib64/python3.11/site-packages/neat/tools/simtools/neuron/x86_64 + RPM_EC=0 ++ jobs -p + exit 0 Processing files: python3-neatdend-0.9.2-11.fc39.x86_64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.UIRavG + umask 022 + cd /builddir/build/BUILD + cd NEAT-0.9.2 + DOCDIR=/builddir/build/BUILDROOT/python-neatdend-0.9.2-11.fc39.x86_64/usr/share/doc/python3-neatdend + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/python-neatdend-0.9.2-11.fc39.x86_64/usr/share/doc/python3-neatdend + cp -pr README.rst /builddir/build/BUILDROOT/python-neatdend-0.9.2-11.fc39.x86_64/usr/share/doc/python3-neatdend + cp -pr CODE_OF_CONDUCT.rst /builddir/build/BUILDROOT/python-neatdend-0.9.2-11.fc39.x86_64/usr/share/doc/python3-neatdend + cp -pr CONTRIBUTING.rst /builddir/build/BUILDROOT/python-neatdend-0.9.2-11.fc39.x86_64/usr/share/doc/python3-neatdend + cp -pr CONTRIBUTORS.rst /builddir/build/BUILDROOT/python-neatdend-0.9.2-11.fc39.x86_64/usr/share/doc/python3-neatdend + RPM_EC=0 ++ jobs -p + exit 0 Provides: python-neatdend = 0.9.2-11.fc39 python3-neatdend = 0.9.2-11.fc39 python3-neatdend(x86-64) = 0.9.2-11.fc39 python3.11-neatdend = 0.9.2-11.fc39 python3.11dist(neatdend) = 0.9.1 python3dist(neatdend) = 0.9.1 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: (python3.11dist(cython) >= 0.29.4 with python3.11dist(cython) < 0.30) /usr/bin/python3 libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.4)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libgcc_s.so.1(GCC_4.0.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) python(abi) = 3.11 python3.11dist(matplotlib) >= 3.4.1 python3.11dist(numpy) >= 1.20.2 python3.11dist(pytest) >= 5.3.2 python3.11dist(scikit-learn) >= 0.24.2 python3.11dist(scipy) >= 1.6.3 python3.11dist(sympy) >= 1.7.1 rtld(GNU_HASH) Processing files: python-neatdend-debugsource-0.9.2-11.fc39.x86_64 Provides: python-neatdend-debugsource = 0.9.2-11.fc39 python-neatdend-debugsource(x86-64) = 0.9.2-11.fc39 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: python3-neatdend-debuginfo-0.9.2-11.fc39.x86_64 Provides: debuginfo(build-id) = bfd71f550bbaa4f5276048a4c7a993e2bb81d399 python-neatdend-debuginfo = 0.9.2-11.fc39 python3-neatdend-debuginfo = 0.9.2-11.fc39 python3-neatdend-debuginfo(x86-64) = 0.9.2-11.fc39 python3.11-neatdend-debuginfo = 0.9.2-11.fc39 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: python-neatdend-debugsource(x86-64) = 0.9.2-11.fc39 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/python-neatdend-0.9.2-11.fc39.x86_64 Wrote: /builddir/build/SRPMS/python-neatdend-0.9.2-11.fc39.src.rpm Wrote: /builddir/build/RPMS/python3-neatdend-debuginfo-0.9.2-11.fc39.x86_64.rpm Wrote: /builddir/build/RPMS/python3-neatdend-0.9.2-11.fc39.x86_64.rpm Wrote: /builddir/build/RPMS/python-neatdend-debugsource-0.9.2-11.fc39.x86_64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.3OREH5 + umask 022 + cd /builddir/build/BUILD + cd NEAT-0.9.2 + /usr/bin/rm -rf /builddir/build/BUILDROOT/python-neatdend-0.9.2-11.fc39.x86_64 + RPM_EC=0 ++ jobs -p + exit 0 Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.KyO9vY + umask 022 + cd /builddir/build/BUILD + rm -rf NEAT-0.9.2 NEAT-0.9.2.gemspec + RPM_EC=0 ++ jobs -p + exit 0 Child return code was: 0