Mock Version: 3.5
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs  --target x86_64 --nodeps /builddir/build/SPECS/snakemake.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1676556891.257923/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x7f1df42ef2d0>timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.k_pz24a4:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=True)
Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.k_pz24a4:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']
Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '74b2e532f7814570bd9c24a3e8e4b20f', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1676556891.257923/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.k_pz24a4:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;<mock-chroot>\\007"', '--setenv=PS1=<mock-chroot> \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bs  --target x86_64 --nodeps /builddir/build/SPECS/snakemake.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1676246400
Wrote: /builddir/build/SRPMS/snakemake-7.22.0-1.fc39.src.rpm
Child return code was: 0
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -br  --target x86_64 --nodeps /builddir/build/SPECS/snakemake.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1676556891.257923/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x7f1df42ef2d0>timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.k_pz24a4:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueraiseExc=FalseprintOutput=True)
Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.k_pz24a4:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']
Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '57ca2b63f6414605943143a59ecdb65e', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1676556891.257923/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.k_pz24a4:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;<mock-chroot>\\007"', '--setenv=PS1=<mock-chroot> \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -br  --target x86_64 --nodeps /builddir/build/SPECS/snakemake.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1676246400
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.goDIKL
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf snakemake-7.22.0
+ /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/snakemake-7.22.0.tar.gz
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd snakemake-7.22.0
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/snakemake-7.11.0-docs-no-animated-demo.patch
+ /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f
+ '[' -z sP ']'
+ shebang_flags=-kasP
+ /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP .
recursedown('.')
recursedown('./.github')
recursedown('./.github/ISSUE_TEMPLATE')
recursedown('./.github/workflows')
recursedown('./docs')
recursedown('./docs/_static')
recursedown('./docs/apidocs')
recursedown('./docs/apidocs/api_reference')
recursedown('./docs/apidocs/api_reference/internal')
recursedown('./docs/executing')
recursedown('./docs/executor_tutorial')
recursedown('./docs/executor_tutorial/workflow')
recursedown('./docs/getting_started')
recursedown('./docs/getting_started/img')
recursedown('./docs/project_info')
recursedown('./docs/project_info/img')
recursedown('./docs/snakefiles')
recursedown('./docs/snakefiles/images')
recursedown('./docs/tutorial')
recursedown('./docs/tutorial/workflow')
recursedown('./examples')
recursedown('./examples/c')
recursedown('./examples/c/include')
recursedown('./examples/c/src')
recursedown('./examples/cufflinks')
recursedown('./examples/cufflinks/mapped')
recursedown('./examples/flux')
recursedown('./examples/hello-world')
recursedown('./examples/hello-world/envs')
recursedown('./examples/hello-world/scripts')
recursedown('./examples/idea')
recursedown('./examples/latex')
recursedown('./examples/mirna')
recursedown('./images')
recursedown('./misc')
recursedown('./misc/nano')
recursedown('./misc/nano/syntax')
recursedown('./misc/vim')
recursedown('./misc/vim/ftdetect')
recursedown('./misc/vim/ftplugin')
recursedown('./misc/vim/ftplugin/snakemake')
recursedown('./misc/vim/syntax')
recursedown('./playground')
recursedown('./playground/iteration')
recursedown('./snakemake')
recursedown('./snakemake/caching')
recursedown('./snakemake/common')
recursedown('./snakemake/deployment')
recursedown('./snakemake/executors')
recursedown('./snakemake/executors/slurm')
recursedown('./snakemake/linting')
recursedown('./snakemake/remote')
recursedown('./snakemake/report')
recursedown('./snakemake/report/data')
recursedown('./snakemake/report/template')
recursedown('./snakemake/report/template/components')
recursedown('./snakemake/template_rendering')
recursedown('./snakemake/unit_tests')
recursedown('./snakemake/unit_tests/templates')
recursedown('./tests')
recursedown('./tests/knapsack')
recursedown('./tests/linting')
recursedown('./tests/linting/absolute_paths')
recursedown('./tests/linting/dynamic')
recursedown('./tests/linting/envvars')
recursedown('./tests/linting/iofile_by_index')
recursedown('./tests/linting/log_directive')
recursedown('./tests/linting/long_run')
recursedown('./tests/linting/missing_software_definition')
recursedown('./tests/linting/mixed_func_and_rules')
recursedown('./tests/linting/not_used_params')
recursedown('./tests/linting/params_prefix')
recursedown('./tests/linting/path_add')
recursedown('./tests/linting/singularity')
recursedown('./tests/linting/tab_usage')
recursedown('./tests/linting/version')
recursedown('./tests/profile')
recursedown('./tests/resources')
recursedown('./tests/resources/slurmcluster')
recursedown("./tests/test (with parenthese's)")
recursedown("./tests/test (with parenthese's)/expected-results")
recursedown('./tests/test01')
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recursedown('./tests/test01/expected-results/dir')
recursedown('./tests/test02')
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recursedown('./tests/test11')
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recursedown('./tests/test12')
recursedown('./tests/test12/expected-results')
recursedown('./tests/test13')
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recursedown('./tests/test14')
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recursedown('./tests/test15')
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recursedown('./tests/testHighWorkload')
recursedown('./tests/testHighWorkload/mfa')
recursedown('./tests/test_all_temp')
recursedown('./tests/test_all_temp/expected-results')
recursedown('./tests/test_ancient')
recursedown('./tests/test_ancient/expected-results')
recursedown('./tests/test_ancient_dag')
recursedown('./tests/test_ancient_dag/expected-results')
recursedown('./tests/test_archive')
recursedown('./tests/test_archive/expected-results')
recursedown('./tests/test_bash')
recursedown('./tests/test_bash/expected-results')
recursedown('./tests/test_batch')
recursedown('./tests/test_batch/expected-results')
recursedown('./tests/test_batch_final')
recursedown('./tests/test_batch_final/expected-results')
recursedown('./tests/test_benchmark')
recursedown('./tests/test_benchmark/expected-results')
recursedown('./tests/test_cache_multioutput')
recursedown('./tests/test_cache_multioutput/expected-results')
recursedown('./tests/test_checkpoint_allowed_rules')
recursedown('./tests/test_checkpoint_allowed_rules/expected-results')
recursedown('./tests/test_checkpoints')
recursedown('./tests/test_checkpoints/expected-results')
recursedown('./tests/test_checkpoints/expected-results/aggregated')
recursedown('./tests/test_checkpoints/samples')
recursedown('./tests/test_checkpoints_dir')
recursedown('./tests/test_checkpoints_dir/expected-results')
recursedown('./tests/test_checkpoints_dir/expected-results/aggregated')
recursedown('./tests/test_checkpoints_dir/samples')
recursedown('./tests/test_cloud_checkpoints_issue574')
recursedown('./tests/test_cloud_checkpoints_issue574/expected-results')
recursedown('./tests/test_cluster_cancelscript')
recursedown('./tests/test_cluster_cancelscript/expected-results')
recursedown('./tests/test_cluster_sidecar')
recursedown('./tests/test_cluster_sidecar/expected-results')
recursedown('./tests/test_cluster_statusscript')
recursedown('./tests/test_cluster_statusscript/expected-results')
recursedown('./tests/test_cluster_statusscript_multi')
recursedown('./tests/test_cluster_statusscript_multi/expected-results')
recursedown('./tests/test_conda')
recursedown('./tests/test_conda/expected-results')
recursedown('./tests/test_conda_cmd_exe')
recursedown('./tests/test_conda_cmd_exe/expected-results')
recursedown('./tests/test_conda_custom_prefix')
recursedown('./tests/test_conda_custom_prefix/expected-results')
recursedown('./tests/test_conda_function')
recursedown('./tests/test_conda_function/expected-results')
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recursedown('./tests/test_conda_named/expected-results')
recursedown('./tests/test_conda_pin_file')
recursedown('./tests/test_conda_pin_file/expected-results')
recursedown('./tests/test_conda_python_script')
recursedown('./tests/test_conda_python_script/expected-results')
recursedown('./tests/test_conditional')
recursedown('./tests/test_conditional/expected-results')
recursedown('./tests/test_config')
recursedown('./tests/test_config/expected-results')
recursedown('./tests/test_config_merging')
recursedown('./tests/test_config_merging/expected-results')
recursedown('./tests/test_container')
recursedown('./tests/test_container/expected-results')
recursedown('./tests/test_containerized')
recursedown('./tests/test_containerized/expected-results')
recursedown('./tests/test_convert_to_cwl')
recursedown('./tests/test_converting_path_for_r_script')
recursedown('./tests/test_converting_path_for_r_script/expected-results')
recursedown('./tests/test_core_dependent_threads')
recursedown('./tests/test_core_dependent_threads/expected-results')
recursedown('./tests/test_cwl')
recursedown('./tests/test_cwl/expected-results')
recursedown('./tests/test_default_remote')
recursedown('./tests/test_default_remote/expected-results')
recursedown('./tests/test_default_resources')
recursedown('./tests/test_default_resources/expected-results')
recursedown('./tests/test_default_target')
recursedown('./tests/test_default_target/expected-results')
recursedown('./tests/test_deferred_func_eval')
recursedown('./tests/test_deferred_func_eval/expected-results')
recursedown('./tests/test_delete_all_output')
recursedown('./tests/test_delete_all_output/expected-results')
recursedown('./tests/test_delete_output')
recursedown('./tests/test_delete_output/expected-results')
recursedown('./tests/test_delete_output/expected-results/foo')
recursedown('./tests/test_deploy_hashing')
recursedown('./tests/test_deploy_hashing/expected-results')
recursedown('./tests/test_deploy_script')
recursedown('./tests/test_deploy_script/expected-results')
recursedown('./tests/test_directory')
recursedown('./tests/test_directory/expected-results')
recursedown('./tests/test_directory/expected-results/dir_to_link_to')
recursedown('./tests/test_directory/expected-results/some')
recursedown('./tests/test_directory/expected-results/some/shadow')
recursedown('./tests/test_directory/expected-results/some_other_dir')
recursedown('./tests/test_directory/input_dir')
recursedown('./tests/test_dup_out_patterns')
recursedown('./tests/test_dup_out_patterns/expected-results')
recursedown('./tests/test_dynamic')
recursedown('./tests/test_dynamic/expected-results')
recursedown('./tests/test_dynamic_temp')
recursedown('./tests/test_dynamic_temp/expected-results')
recursedown('./tests/test_empty_include')
recursedown('./tests/test_empty_include/expected-results')
recursedown('./tests/test_ensure')
recursedown('./tests/test_ensure/expected-results')
recursedown('./tests/test_env_modules')
recursedown('./tests/test_env_modules/expected-results')
recursedown('./tests/test_envvars')
recursedown('./tests/test_envvars/expected-results')
recursedown('./tests/test_expand_flag')
recursedown('./tests/test_expand_flag/expected-results')
recursedown('./tests/test_filegraph')
recursedown('./tests/test_filegraph/scripts')
recursedown('./tests/test_filesep_windows')
recursedown('./tests/test_filesep_windows/expected-results')
recursedown('./tests/test_filesep_windows/expected-results/subfolder')
recursedown('./tests/test_filesep_windows/subfolder')
recursedown('./tests/test_format_params')
recursedown('./tests/test_format_params/expected-results')
recursedown('./tests/test_format_wildcards')
recursedown('./tests/test_format_wildcards/expected-results')
recursedown('./tests/test_ftp_immediate_close')
recursedown('./tests/test_ftp_immediate_close/expected-results')
recursedown('./tests/test_generate_unit_tests')
recursedown('./tests/test_generate_unit_tests/expected-results')
recursedown('./tests/test_generate_unit_tests/expected-results/.tests')
recursedown('./tests/test_generate_unit_tests/expected-results/.tests/unit')
recursedown('./tests/test_generate_unit_tests/expected-results/.tests/unit/a')
recursedown('./tests/test_generate_unit_tests/expected-results/.tests/unit/all')
recursedown('./tests/test_generate_unit_tests/expected-results/.tests/unit/all/test')
recursedown('./tests/test_generate_unit_tests/expected-results/.tests/unit/b')
recursedown('./tests/test_generate_unit_tests/expected-results/.tests/unit/b/test')
recursedown('./tests/test_generate_unit_tests/test')
recursedown('./tests/test_get_log_both')
recursedown('./tests/test_get_log_both/expected-results')
recursedown('./tests/test_get_log_complex')
recursedown('./tests/test_get_log_complex/expected-results')
recursedown('./tests/test_get_log_none')
recursedown('./tests/test_get_log_none/expected-results')
recursedown('./tests/test_get_log_stderr')
recursedown('./tests/test_get_log_stderr/expected-results')
recursedown('./tests/test_get_log_stdout')
recursedown('./tests/test_get_log_stdout/expected-results')
recursedown('./tests/test_github_issue105')
recursedown('./tests/test_github_issue105/expected-results')
recursedown('./tests/test_github_issue1062')
recursedown('./tests/test_github_issue1062/expected-results')
recursedown('./tests/test_github_issue1069')
recursedown('./tests/test_github_issue1069/expected-results')
recursedown('./tests/test_github_issue1158')
recursedown('./tests/test_github_issue1158/expected-results')
recursedown('./tests/test_github_issue1261')
recursedown('./tests/test_github_issue1261/expected-results')
recursedown('./tests/test_github_issue1261/expected-results/out')
recursedown('./tests/test_github_issue1384')
recursedown('./tests/test_github_issue1384/expected-results')
recursedown('./tests/test_github_issue1389')
recursedown('./tests/test_github_issue1389/expected-results')
recursedown('./tests/test_github_issue1396')
recursedown('./tests/test_github_issue1396/expected-results')
recursedown('./tests/test_github_issue1460')
recursedown('./tests/test_github_issue1460/expected-results')
recursedown('./tests/test_github_issue1469')
recursedown('./tests/test_github_issue1498')
recursedown('./tests/test_github_issue1498/expected-results')
recursedown('./tests/test_github_issue1498/expected-results/results')
recursedown('./tests/test_github_issue1498/expected-results/results/other')
recursedown('./tests/test_github_issue1498/expected-results/results/other/results')
recursedown('./tests/test_github_issue1500')
recursedown('./tests/test_github_issue1500/config')
recursedown('./tests/test_github_issue1500/expected-results')
recursedown('./tests/test_github_issue1500/module-test')
recursedown('./tests/test_github_issue1542')
recursedown('./tests/test_github_issue1542/expected-results')
recursedown('./tests/test_github_issue1550')
recursedown('./tests/test_github_issue1550/expected-results')
recursedown('./tests/test_github_issue1618')
recursedown('./tests/test_github_issue1618/expected-results')
recursedown('./tests/test_github_issue1818')
recursedown('./tests/test_github_issue1818/.snakemake')
recursedown('./tests/test_github_issue1818/.snakemake/metadata')
recursedown('./tests/test_github_issue1818/expected-results')
recursedown('./tests/test_github_issue1818/expected-results/my_directory')
recursedown('./tests/test_github_issue1818/my_directory')
recursedown('./tests/test_github_issue1882')
recursedown('./tests/test_github_issue1882/expected-results')
recursedown('./tests/test_github_issue261')
recursedown('./tests/test_github_issue261/expected-results')
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recursedown('./tests/test_tmpdir')
recursedown('./tests/test_tmpdir/expected-results')
recursedown('./tests/test_touch')
recursedown('./tests/test_touch/expected-results')
recursedown('./tests/test_touch_pipeline_with_temp_dir')
recursedown('./tests/test_touch_pipeline_with_temp_dir/expected-results')
recursedown('./tests/test_touch_remote_prefix')
recursedown('./tests/test_touch_remote_prefix/expected-results')
recursedown('./tests/test_touch_with_directories')
recursedown('./tests/test_touch_with_directories/expected-results')
recursedown('./tests/test_unpack_dict')
recursedown('./tests/test_unpack_dict/expected-results')
recursedown('./tests/test_unpack_list')
recursedown('./tests/test_unpack_list/expected-results')
recursedown('./tests/test_until')
recursedown('./tests/test_until/expected-results')
recursedown('./tests/test_update_config')
recursedown('./tests/test_update_config/expected-results')
recursedown('./tests/test_url_include')
recursedown('./tests/test_url_include/expected-results')
recursedown('./tests/test_use_rule_same_module')
recursedown('./tests/test_use_rule_same_module/expected-results')
recursedown('./tests/test_validate')
recursedown('./tests/test_validate/expected-results')
recursedown('./tests/test_wildcard_count_ambiguity')
recursedown('./tests/test_wildcard_count_ambiguity/expected-results')
recursedown('./tests/test_wildcard_keyword')
recursedown('./tests/test_wildcard_keyword/expected-results')
recursedown('./tests/test_wrapper')
recursedown('./tests/test_wrapper/expected-results')
recursedown('./tests/test_xrootd')
recursedown('./tests/test_yaml_config')
recursedown('./tests/test_yaml_config/expected-results')
+ sed -r -i '1{/^#!/d}' snakemake/executors/jobscript.sh snakemake/executors/google_lifesciences_helper.py
+ sed -r -i 's@"python"@"/usr/bin/python3"@g' tests/test_linting.py
+ sed -r -i /sphinxcontrib-napoleon/d docs/requirements.txt
+ echo 'latex_engine = '\''xelatex'\'''
+ RPM_EC=0
++ jobs -p
+ exit 0
+ umask 022
+ cd /builddir/build/BUILD
+ cd snakemake-7.22.0
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1  '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ echo pyproject-rpm-macros
+ echo python3-devel
+ echo 'python3dist(pip) >= 19'
+ echo 'python3dist(packaging)'
+ '[' -f pyproject.toml ']'
+ echo '(python3dist(toml) if python3-devel < 3.11)'
+ rm -rfv '*.dist-info/'
+ '[' -f /usr/bin/python3 ']'
+ mkdir -p /builddir/build/BUILD/snakemake-7.22.0/.pyproject-builddir
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1  '
+ TMPDIR=/builddir/build/BUILD/snakemake-7.22.0/.pyproject-builddir
+ RPM_TOXENV=py311
+ HOSTNAME=rpmbuild
+ /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/snakemake-7.22.0/pyproject-wheeldir -x reports,messaging,google-cloud docs/requirements.txt
Handling sphinx >=3 from requirements file docs/requirements.txt
Requirement satisfied: sphinx >=3
   (installed: sphinx 5.3.0)
Handling sphinx-argparse from requirements file docs/requirements.txt
Requirement not satisfied: sphinx-argparse
Handling sphinx_rtd_theme from requirements file docs/requirements.txt
Requirement not satisfied: sphinx_rtd_theme
Handling docutils from requirements file docs/requirements.txt
Requirement satisfied: docutils
   (installed: docutils 0.19)
Handling myst-parser from requirements file docs/requirements.txt
Requirement not satisfied: myst-parser
Handling configargparse from requirements file docs/requirements.txt
Requirement satisfied: configargparse
   (installed: configargparse 1.5.3)
Handling appdirs from requirements file docs/requirements.txt
Requirement not satisfied: appdirs
Exiting dependency generation pass: all requirements files
+ RPM_EC=0
++ jobs -p
+ exit 0
Wrote: /builddir/build/SRPMS/snakemake-7.22.0-1.fc39.buildreqs.nosrc.rpm
Child return code was: 11
Dynamic buildrequires detected
Going to install missing buildrequires. See root.log for details.
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -br  --target x86_64 --nodeps /builddir/build/SPECS/snakemake.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1676556891.257923/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x7f1df42ef2d0>timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.k_pz24a4:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueraiseExc=FalseprintOutput=True)
Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.k_pz24a4:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']
Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'a0da92313d264cf88e6519c947e1e2fc', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1676556891.257923/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.k_pz24a4:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;<mock-chroot>\\007"', '--setenv=PS1=<mock-chroot> \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -br  --target x86_64 --nodeps /builddir/build/SPECS/snakemake.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1676246400
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.hunYSw
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf snakemake-7.22.0
+ /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/snakemake-7.22.0.tar.gz
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd snakemake-7.22.0
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/snakemake-7.11.0-docs-no-animated-demo.patch
+ /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f
+ '[' -z sP ']'
+ shebang_flags=-kasP
+ /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP .
recursedown('.')
recursedown('./.github')
recursedown('./.github/ISSUE_TEMPLATE')
recursedown('./.github/workflows')
recursedown('./docs')
recursedown('./docs/_static')
recursedown('./docs/apidocs')
recursedown('./docs/apidocs/api_reference')
recursedown('./docs/apidocs/api_reference/internal')
recursedown('./docs/executing')
recursedown('./docs/executor_tutorial')
recursedown('./docs/executor_tutorial/workflow')
recursedown('./docs/getting_started')
recursedown('./docs/getting_started/img')
recursedown('./docs/project_info')
recursedown('./docs/project_info/img')
recursedown('./docs/snakefiles')
recursedown('./docs/snakefiles/images')
recursedown('./docs/tutorial')
recursedown('./docs/tutorial/workflow')
recursedown('./examples')
recursedown('./examples/c')
recursedown('./examples/c/include')
recursedown('./examples/c/src')
recursedown('./examples/cufflinks')
recursedown('./examples/cufflinks/mapped')
recursedown('./examples/flux')
recursedown('./examples/hello-world')
recursedown('./examples/hello-world/envs')
recursedown('./examples/hello-world/scripts')
recursedown('./examples/idea')
recursedown('./examples/latex')
recursedown('./examples/mirna')
recursedown('./images')
recursedown('./misc')
recursedown('./misc/nano')
recursedown('./misc/nano/syntax')
recursedown('./misc/vim')
recursedown('./misc/vim/ftdetect')
recursedown('./misc/vim/ftplugin')
recursedown('./misc/vim/ftplugin/snakemake')
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recursedown('./playground')
recursedown('./playground/iteration')
recursedown('./snakemake')
recursedown('./snakemake/caching')
recursedown('./snakemake/common')
recursedown('./snakemake/deployment')
recursedown('./snakemake/executors')
recursedown('./snakemake/executors/slurm')
recursedown('./snakemake/linting')
recursedown('./snakemake/remote')
recursedown('./snakemake/report')
recursedown('./snakemake/report/data')
recursedown('./snakemake/report/template')
recursedown('./snakemake/report/template/components')
recursedown('./snakemake/template_rendering')
recursedown('./snakemake/unit_tests')
recursedown('./snakemake/unit_tests/templates')
recursedown('./tests')
recursedown('./tests/knapsack')
recursedown('./tests/linting')
recursedown('./tests/linting/absolute_paths')
recursedown('./tests/linting/dynamic')
recursedown('./tests/linting/envvars')
recursedown('./tests/linting/iofile_by_index')
recursedown('./tests/linting/log_directive')
recursedown('./tests/linting/long_run')
recursedown('./tests/linting/missing_software_definition')
recursedown('./tests/linting/mixed_func_and_rules')
recursedown('./tests/linting/not_used_params')
recursedown('./tests/linting/params_prefix')
recursedown('./tests/linting/path_add')
recursedown('./tests/linting/singularity')
recursedown('./tests/linting/tab_usage')
recursedown('./tests/linting/version')
recursedown('./tests/profile')
recursedown('./tests/resources')
recursedown('./tests/resources/slurmcluster')
recursedown("./tests/test (with parenthese's)")
recursedown("./tests/test (with parenthese's)/expected-results")
recursedown('./tests/test01')
recursedown('./tests/test01/expected-results')
recursedown('./tests/test01/expected-results/dir')
recursedown('./tests/test02')
recursedown('./tests/test02/expected-results')
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recursedown('./tests/test13/expected-results')
recursedown('./tests/test14')
recursedown('./tests/test14/expected-results')
recursedown('./tests/test15')
recursedown('./tests/test15/expected-results')
recursedown('./tests/testHighWorkload')
recursedown('./tests/testHighWorkload/mfa')
recursedown('./tests/test_all_temp')
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recursedown('./tests/test_ancient')
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recursedown('./tests/test_ancient_dag')
recursedown('./tests/test_ancient_dag/expected-results')
recursedown('./tests/test_archive')
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recursedown('./tests/test_bash')
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recursedown('./tests/test_batch')
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recursedown('./tests/test_batch_final')
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recursedown('./tests/test_cache_multioutput')
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recursedown('./tests/test_checkpoint_allowed_rules')
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recursedown('./tests/test_checkpoints')
recursedown('./tests/test_checkpoints/expected-results')
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recursedown('./tests/test_checkpoints/samples')
recursedown('./tests/test_checkpoints_dir')
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recursedown('./tests/test_cloud_checkpoints_issue574')
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recursedown('./tests/test_conda')
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recursedown('./tests/test_container')
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recursedown('./tests/test_containerized')
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recursedown('./tests/test_convert_to_cwl')
recursedown('./tests/test_converting_path_for_r_script')
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recursedown('./tests/test_core_dependent_threads')
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recursedown('./tests/test_cwl')
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recursedown('./tests/test_deploy_hashing')
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recursedown('./tests/test_filesep_windows')
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recursedown('./tests/test_script/expected-results')
recursedown('./tests/test_script/scripts')
recursedown('./tests/test_script_py')
recursedown('./tests/test_script_py/expected-results')
recursedown('./tests/test_script_py/scripts')
recursedown('./tests/test_service_jobs')
recursedown('./tests/test_service_jobs/expected-results')
recursedown('./tests/test_set_resources')
recursedown('./tests/test_set_resources/expected-results')
recursedown('./tests/test_shadow')
recursedown('./tests/test_shadow/expected-results')
recursedown('./tests/test_shadow_copy')
recursedown('./tests/test_shadow_copy/expected-results')
recursedown('./tests/test_shadow_prefix')
recursedown('./tests/test_shadow_prefix/expected-results')
recursedown('./tests/test_shadowed_log')
recursedown('./tests/test_shadowed_log/expected-results')
recursedown('./tests/test_shell')
recursedown('./tests/test_shell/expected-results')
recursedown('./tests/test_singularity')
recursedown('./tests/test_singularity/expected-results')
recursedown('./tests/test_singularity_conda')
recursedown('./tests/test_singularity_conda/expected-results')
recursedown('./tests/test_singularity_global')
recursedown('./tests/test_singularity_global/expected-results')
recursedown('./tests/test_singularity_module')
recursedown('./tests/test_singularity_module/expected-results')
recursedown('./tests/test_singularity_none')
recursedown('./tests/test_singularity_none/expected-results')
recursedown('./tests/test_slurm_mpi')
recursedown('./tests/test_slurm_mpi/envs')
recursedown('./tests/test_slurm_mpi/expected-results')
recursedown('./tests/test_solver')
recursedown('./tests/test_solver/expected-results')
recursedown('./tests/test_source_path')
recursedown('./tests/test_source_path/expected-results')
recursedown('./tests/test_source_path/workflow')
recursedown('./tests/test_source_path/workflow/resources')
recursedown('./tests/test_spaces_in_fnames')
recursedown('./tests/test_spaces_in_fnames/expected-results')
recursedown('./tests/test_speed')
recursedown('./tests/test_srcdir')
recursedown('./tests/test_srcdir/expected-results')
recursedown('./tests/test_static_remote')
recursedown('./tests/test_static_remote/expected-results')
recursedown('./tests/test_strict_mode')
recursedown('./tests/test_strict_mode/expected-results')
recursedown('./tests/test_string_resources')
recursedown('./tests/test_string_resources/expected-results')
recursedown('./tests/test_subworkflow_config')
recursedown('./tests/test_subworkflow_config/expected-results')
recursedown('./tests/test_subworkflows')
recursedown('./tests/test_subworkflows/expected-results')
recursedown('./tests/test_symlink_temp')
recursedown('./tests/test_symlink_temp/expected-results')
recursedown('./tests/test_symlink_time_handling')
recursedown('./tests/test_symlink_time_handling/expected-results')
recursedown('./tests/test_temp')
recursedown('./tests/test_temp/expected-results')
recursedown('./tests/test_temp_expand')
recursedown('./tests/test_temp_expand/expected-results')
recursedown('./tests/test_template_engine')
recursedown('./tests/test_template_engine/expected-results')
recursedown('./tests/test_tes')
recursedown('./tests/test_tes/expected-results')
recursedown('./tests/test_threads')
recursedown('./tests/test_threads/expected-results')
recursedown('./tests/test_threads0')
recursedown('./tests/test_threads0/expected-results')
recursedown('./tests/test_tibanna')
recursedown('./tests/test_tibanna/expected-results')
recursedown('./tests/test_tibanna/scripts')
recursedown('./tests/test_tmpdir')
recursedown('./tests/test_tmpdir/expected-results')
recursedown('./tests/test_touch')
recursedown('./tests/test_touch/expected-results')
recursedown('./tests/test_touch_pipeline_with_temp_dir')
recursedown('./tests/test_touch_pipeline_with_temp_dir/expected-results')
recursedown('./tests/test_touch_remote_prefix')
recursedown('./tests/test_touch_remote_prefix/expected-results')
recursedown('./tests/test_touch_with_directories')
recursedown('./tests/test_touch_with_directories/expected-results')
recursedown('./tests/test_unpack_dict')
recursedown('./tests/test_unpack_dict/expected-results')
recursedown('./tests/test_unpack_list')
recursedown('./tests/test_unpack_list/expected-results')
recursedown('./tests/test_until')
recursedown('./tests/test_until/expected-results')
recursedown('./tests/test_update_config')
recursedown('./tests/test_update_config/expected-results')
recursedown('./tests/test_url_include')
recursedown('./tests/test_url_include/expected-results')
recursedown('./tests/test_use_rule_same_module')
recursedown('./tests/test_use_rule_same_module/expected-results')
recursedown('./tests/test_validate')
recursedown('./tests/test_validate/expected-results')
recursedown('./tests/test_wildcard_count_ambiguity')
recursedown('./tests/test_wildcard_count_ambiguity/expected-results')
recursedown('./tests/test_wildcard_keyword')
recursedown('./tests/test_wildcard_keyword/expected-results')
recursedown('./tests/test_wrapper')
recursedown('./tests/test_wrapper/expected-results')
recursedown('./tests/test_xrootd')
recursedown('./tests/test_yaml_config')
recursedown('./tests/test_yaml_config/expected-results')
Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.XWSCzO
+ sed -r -i '1{/^#!/d}' snakemake/executors/jobscript.sh snakemake/executors/google_lifesciences_helper.py
+ sed -r -i 's@"python"@"/usr/bin/python3"@g' tests/test_linting.py
+ sed -r -i /sphinxcontrib-napoleon/d docs/requirements.txt
+ echo 'latex_engine = '\''xelatex'\'''
+ RPM_EC=0
++ jobs -p
+ exit 0
+ umask 022
+ cd /builddir/build/BUILD
+ cd snakemake-7.22.0
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1  '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ echo pyproject-rpm-macros
+ echo python3-devel
+ echo 'python3dist(pip) >= 19'
+ echo 'python3dist(packaging)'
+ '[' -f pyproject.toml ']'
+ echo '(python3dist(toml) if python3-devel < 3.11)'
+ rm -rfv '*.dist-info/'
+ '[' -f /usr/bin/python3 ']'
+ mkdir -p /builddir/build/BUILD/snakemake-7.22.0/.pyproject-builddir
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1  '
+ TMPDIR=/builddir/build/BUILD/snakemake-7.22.0/.pyproject-builddir
+ RPM_TOXENV=py311
+ HOSTNAME=rpmbuild
+ /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/snakemake-7.22.0/pyproject-wheeldir -x reports,messaging,google-cloud docs/requirements.txt
Handling sphinx >=3 from requirements file docs/requirements.txt
Requirement satisfied: sphinx >=3
   (installed: sphinx 5.3.0)
Handling sphinx-argparse from requirements file docs/requirements.txt
Requirement satisfied: sphinx-argparse
   (installed: sphinx-argparse 0.4.0)
Handling sphinx_rtd_theme from requirements file docs/requirements.txt
Requirement satisfied: sphinx_rtd_theme
   (installed: sphinx_rtd_theme 1.1.1)
Handling docutils from requirements file docs/requirements.txt
Requirement satisfied: docutils
   (installed: docutils 0.19)
Handling myst-parser from requirements file docs/requirements.txt
Requirement satisfied: myst-parser
   (installed: myst-parser 0.18.1)
Handling configargparse from requirements file docs/requirements.txt
Requirement satisfied: configargparse
   (installed: configargparse 1.5.3)
Handling appdirs from requirements file docs/requirements.txt
Requirement satisfied: appdirs
   (installed: appdirs 1.4.4)
Handling setuptools>=42 from build-system.requires
Requirement satisfied: setuptools>=42
   (installed: setuptools 65.5.1)
Handling tomli; python_version < "3.11" from build-system.requires
Ignoring alien requirement: tomli; python_version < "3.11"
HOOK STDOUT: running egg_info
HOOK STDOUT: creating snakemake.egg-info
HOOK STDOUT: writing snakemake.egg-info/PKG-INFO
HOOK STDOUT: writing dependency_links to snakemake.egg-info/dependency_links.txt
HOOK STDOUT: writing entry points to snakemake.egg-info/entry_points.txt
HOOK STDOUT: writing requirements to snakemake.egg-info/requires.txt
HOOK STDOUT: writing top-level names to snakemake.egg-info/top_level.txt
HOOK STDOUT: writing manifest file 'snakemake.egg-info/SOURCES.txt'
HOOK STDOUT: reading manifest file 'snakemake.egg-info/SOURCES.txt'
HOOK STDOUT: reading manifest template 'MANIFEST.in'
HOOK STDOUT: adding license file 'LICENSE.md'
HOOK STDOUT: adding license file 'AUTHORS.rst'
HOOK STDOUT: writing manifest file 'snakemake.egg-info/SOURCES.txt'
Handling wheel from get_requires_for_build_wheel
Requirement not satisfied: wheel
Exiting dependency generation pass: get_requires_for_build_wheel
+ RPM_EC=0
++ jobs -p
+ exit 0
Wrote: /builddir/build/SRPMS/snakemake-7.22.0-1.fc39.buildreqs.nosrc.rpm
Child return code was: 11
Dynamic buildrequires detected
Going to install missing buildrequires. See root.log for details.
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -br  --target x86_64 --nodeps /builddir/build/SPECS/snakemake.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1676556891.257923/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x7f1df42ef2d0>timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.k_pz24a4:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueraiseExc=FalseprintOutput=True)
Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.k_pz24a4:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']
Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'c2c30cf39a05445dbfd2f91ff184156c', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1676556891.257923/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.k_pz24a4:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;<mock-chroot>\\007"', '--setenv=PS1=<mock-chroot> \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -br  --target x86_64 --nodeps /builddir/build/SPECS/snakemake.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1676246400
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.iHx1kg
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf snakemake-7.22.0
+ /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/snakemake-7.22.0.tar.gz
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd snakemake-7.22.0
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/snakemake-7.11.0-docs-no-animated-demo.patch
+ /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f
+ '[' -z sP ']'
+ shebang_flags=-kasP
+ /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP .
recursedown('.')
recursedown('./.github')
recursedown('./.github/ISSUE_TEMPLATE')
recursedown('./.github/workflows')
recursedown('./docs')
recursedown('./docs/_static')
recursedown('./docs/apidocs')
recursedown('./docs/apidocs/api_reference')
recursedown('./docs/apidocs/api_reference/internal')
recursedown('./docs/executing')
recursedown('./docs/executor_tutorial')
recursedown('./docs/executor_tutorial/workflow')
recursedown('./docs/getting_started')
recursedown('./docs/getting_started/img')
recursedown('./docs/project_info')
recursedown('./docs/project_info/img')
recursedown('./docs/snakefiles')
recursedown('./docs/snakefiles/images')
recursedown('./docs/tutorial')
recursedown('./docs/tutorial/workflow')
recursedown('./examples')
recursedown('./examples/c')
recursedown('./examples/c/include')
recursedown('./examples/c/src')
recursedown('./examples/cufflinks')
recursedown('./examples/cufflinks/mapped')
recursedown('./examples/flux')
recursedown('./examples/hello-world')
recursedown('./examples/hello-world/envs')
recursedown('./examples/hello-world/scripts')
recursedown('./examples/idea')
recursedown('./examples/latex')
recursedown('./examples/mirna')
recursedown('./images')
recursedown('./misc')
recursedown('./misc/nano')
recursedown('./misc/nano/syntax')
recursedown('./misc/vim')
recursedown('./misc/vim/ftdetect')
recursedown('./misc/vim/ftplugin')
recursedown('./misc/vim/ftplugin/snakemake')
recursedown('./misc/vim/syntax')
recursedown('./playground')
recursedown('./playground/iteration')
recursedown('./snakemake')
recursedown('./snakemake/caching')
recursedown('./snakemake/common')
recursedown('./snakemake/deployment')
recursedown('./snakemake/executors')
recursedown('./snakemake/executors/slurm')
recursedown('./snakemake/linting')
recursedown('./snakemake/remote')
recursedown('./snakemake/report')
recursedown('./snakemake/report/data')
recursedown('./snakemake/report/template')
recursedown('./snakemake/report/template/components')
recursedown('./snakemake/template_rendering')
recursedown('./snakemake/unit_tests')
recursedown('./snakemake/unit_tests/templates')
recursedown('./tests')
recursedown('./tests/knapsack')
recursedown('./tests/linting')
recursedown('./tests/linting/absolute_paths')
recursedown('./tests/linting/dynamic')
recursedown('./tests/linting/envvars')
recursedown('./tests/linting/iofile_by_index')
recursedown('./tests/linting/log_directive')
recursedown('./tests/linting/long_run')
recursedown('./tests/linting/missing_software_definition')
recursedown('./tests/linting/mixed_func_and_rules')
recursedown('./tests/linting/not_used_params')
recursedown('./tests/linting/params_prefix')
recursedown('./tests/linting/path_add')
recursedown('./tests/linting/singularity')
recursedown('./tests/linting/tab_usage')
recursedown('./tests/linting/version')
recursedown('./tests/profile')
recursedown('./tests/resources')
recursedown('./tests/resources/slurmcluster')
recursedown("./tests/test (with parenthese's)")
recursedown("./tests/test (with parenthese's)/expected-results")
recursedown('./tests/test01')
recursedown('./tests/test01/expected-results')
recursedown('./tests/test01/expected-results/dir')
recursedown('./tests/test02')
recursedown('./tests/test02/expected-results')
recursedown('./tests/test03')
recursedown('./tests/test03/expected-results')
recursedown('./tests/test04')
recursedown('./tests/test04/expected-results')
recursedown('./tests/test05')
recursedown('./tests/test05/expected-results')
recursedown('./tests/test06')
recursedown('./tests/test06/expected-results')
recursedown('./tests/test07')
recursedown('./tests/test07/expected-results')
recursedown('./tests/test08')
recursedown('./tests/test08/expected-results')
recursedown('./tests/test09')
recursedown('./tests/test09/expected-results')
recursedown('./tests/test10')
recursedown('./tests/test10/expected-results')
recursedown('./tests/test11')
recursedown('./tests/test11/expected-results')
recursedown('./tests/test12')
recursedown('./tests/test12/expected-results')
recursedown('./tests/test13')
recursedown('./tests/test13/expected-results')
recursedown('./tests/test14')
recursedown('./tests/test14/expected-results')
recursedown('./tests/test15')
recursedown('./tests/test15/expected-results')
recursedown('./tests/testHighWorkload')
recursedown('./tests/testHighWorkload/mfa')
recursedown('./tests/test_all_temp')
recursedown('./tests/test_all_temp/expected-results')
recursedown('./tests/test_ancient')
recursedown('./tests/test_ancient/expected-results')
recursedown('./tests/test_ancient_dag')
recursedown('./tests/test_ancient_dag/expected-results')
recursedown('./tests/test_archive')
recursedown('./tests/test_archive/expected-results')
recursedown('./tests/test_bash')
recursedown('./tests/test_bash/expected-results')
recursedown('./tests/test_batch')
recursedown('./tests/test_batch/expected-results')
recursedown('./tests/test_batch_final')
recursedown('./tests/test_batch_final/expected-results')
recursedown('./tests/test_benchmark')
recursedown('./tests/test_benchmark/expected-results')
recursedown('./tests/test_cache_multioutput')
recursedown('./tests/test_cache_multioutput/expected-results')
recursedown('./tests/test_checkpoint_allowed_rules')
recursedown('./tests/test_checkpoint_allowed_rules/expected-results')
recursedown('./tests/test_checkpoints')
recursedown('./tests/test_checkpoints/expected-results')
recursedown('./tests/test_checkpoints/expected-results/aggregated')
recursedown('./tests/test_checkpoints/samples')
recursedown('./tests/test_checkpoints_dir')
recursedown('./tests/test_checkpoints_dir/expected-results')
recursedown('./tests/test_checkpoints_dir/expected-results/aggregated')
recursedown('./tests/test_checkpoints_dir/samples')
recursedown('./tests/test_cloud_checkpoints_issue574')
recursedown('./tests/test_cloud_checkpoints_issue574/expected-results')
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recursedown('./tests/test_pipes2')
recursedown('./tests/test_pipes2/expected-results')
recursedown('./tests/test_pipes_fail')
recursedown('./tests/test_pipes_fail/expected-results')
recursedown('./tests/test_pipes_multiple')
recursedown('./tests/test_pipes_multiple/expected-results')
recursedown('./tests/test_profile')
recursedown('./tests/test_profile/expected-results')
recursedown('./tests/test_protected_symlink_output')
recursedown('./tests/test_protected_symlink_output/expected-results')
recursedown('./tests/test_r_wrapper')
recursedown('./tests/test_remote')
recursedown('./tests/test_remote/expected-results')
recursedown('./tests/test_remote_auto')
recursedown('./tests/test_remote_auto/expected-results')
recursedown('./tests/test_remote_azure')
recursedown('./tests/test_remote_gs')
recursedown('./tests/test_remote_gs/expected-results')
recursedown('./tests/test_remote_http')
recursedown('./tests/test_remote_http/expected-results')
recursedown('./tests/test_remote_irods')
recursedown('./tests/test_remote_irods/expected-results')
recursedown('./tests/test_remote_irods/setup-data')
recursedown('./tests/test_remote_irods/test-data')
recursedown('./tests/test_remote_log')
recursedown('./tests/test_remote_log/expected-results')
recursedown('./tests/test_remote_ncbi')
recursedown('./tests/test_remote_ncbi/expected-results')
recursedown('./tests/test_remote_ncbi_simple')
recursedown('./tests/test_remote_ncbi_simple/expected-results')
recursedown('./tests/test_remote_sftp')
recursedown('./tests/test_remote_sftp/expected-results')
recursedown('./tests/test_remote_zenodo')
recursedown('./tests/test_remote_zenodo/expected-results')
recursedown('./tests/test_report')
recursedown('./tests/test_report/.snakemake')
recursedown('./tests/test_report/.snakemake/metadata')
recursedown('./tests/test_report/data')
recursedown('./tests/test_report/envs')
recursedown('./tests/test_report/expected-results')
recursedown('./tests/test_report/report')
recursedown('./tests/test_report/testdir')
recursedown('./tests/test_report_dir')
recursedown('./tests/test_report_dir/expected-results')
recursedown('./tests/test_report_dir/test')
recursedown('./tests/test_report_dir/test/js')
recursedown('./tests/test_report_display_code')
recursedown('./tests/test_report_display_code/expected-results')
recursedown('./tests/test_report_zip')
recursedown('./tests/test_report_zip/.snakemake')
recursedown('./tests/test_report_zip/.snakemake/metadata')
recursedown('./tests/test_report_zip/data')
recursedown('./tests/test_report_zip/envs')
recursedown('./tests/test_report_zip/expected-results')
recursedown('./tests/test_report_zip/report')
recursedown('./tests/test_report_zip/testdir')
recursedown('./tests/test_restartable_job_cmd_exit_1')
recursedown('./tests/test_restartable_job_cmd_exit_1/expected-results')
recursedown('./tests/test_restartable_job_qsub_exit_1')
recursedown('./tests/test_restartable_job_qsub_exit_1/expected-results')
recursedown('./tests/test_retries')
recursedown('./tests/test_retries/expected-results')
recursedown('./tests/test_retries_not_overriden')
recursedown('./tests/test_retries_not_overriden/expected-results')
recursedown('./tests/test_rule_defined_in_for_loop')
recursedown('./tests/test_rule_defined_in_for_loop/expected-results')
recursedown('./tests/test_rule_inheritance_globals')
recursedown('./tests/test_rule_inheritance_globals/.snakemake')
recursedown('./tests/test_rule_inheritance_globals/.snakemake/metadata')
recursedown('./tests/test_rule_inheritance_globals/expected-results')
recursedown('./tests/test_ruledag')
recursedown('./tests/test_ruledeps')
recursedown('./tests/test_ruledeps/expected-results')
recursedown('./tests/test_run_namedlist')
recursedown('./tests/test_run_namedlist/expected-results')
recursedown('./tests/test_same_wildcard')
recursedown('./tests/test_same_wildcard/expected-results')
recursedown('./tests/test_scatter_gather')
recursedown('./tests/test_scatter_gather/expected-results')
recursedown('./tests/test_scatter_gather/expected-results/gathered')
recursedown('./tests/test_scatter_gather/expected-results/splitted')
recursedown('./tests/test_scatter_gather_multiple_processes')
recursedown('./tests/test_scatter_gather_multiple_processes/expected-results')
recursedown('./tests/test_scatter_gather_multiple_processes/expected-results/gathered')
recursedown('./tests/test_scatter_gather_multiple_processes/expected-results/split_a')
recursedown('./tests/test_scatter_gather_multiple_processes/expected-results/split_b')
recursedown('./tests/test_script')
recursedown('./tests/test_script/envs')
recursedown('./tests/test_script/expected-results')
recursedown('./tests/test_script/scripts')
recursedown('./tests/test_script_py')
recursedown('./tests/test_script_py/expected-results')
recursedown('./tests/test_script_py/scripts')
recursedown('./tests/test_service_jobs')
recursedown('./tests/test_service_jobs/expected-results')
recursedown('./tests/test_set_resources')
recursedown('./tests/test_set_resources/expected-results')
recursedown('./tests/test_shadow')
recursedown('./tests/test_shadow/expected-results')
recursedown('./tests/test_shadow_copy')
recursedown('./tests/test_shadow_copy/expected-results')
recursedown('./tests/test_shadow_prefix')
recursedown('./tests/test_shadow_prefix/expected-results')
recursedown('./tests/test_shadowed_log')
recursedown('./tests/test_shadowed_log/expected-results')
recursedown('./tests/test_shell')
recursedown('./tests/test_shell/expected-results')
recursedown('./tests/test_singularity')
recursedown('./tests/test_singularity/expected-results')
recursedown('./tests/test_singularity_conda')
recursedown('./tests/test_singularity_conda/expected-results')
recursedown('./tests/test_singularity_global')
recursedown('./tests/test_singularity_global/expected-results')
recursedown('./tests/test_singularity_module')
recursedown('./tests/test_singularity_module/expected-results')
recursedown('./tests/test_singularity_none')
recursedown('./tests/test_singularity_none/expected-results')
recursedown('./tests/test_slurm_mpi')
recursedown('./tests/test_slurm_mpi/envs')
recursedown('./tests/test_slurm_mpi/expected-results')
recursedown('./tests/test_solver')
recursedown('./tests/test_solver/expected-results')
recursedown('./tests/test_source_path')
recursedown('./tests/test_source_path/expected-results')
recursedown('./tests/test_source_path/workflow')
recursedown('./tests/test_source_path/workflow/resources')
recursedown('./tests/test_spaces_in_fnames')
recursedown('./tests/test_spaces_in_fnames/expected-results')
recursedown('./tests/test_speed')
recursedown('./tests/test_srcdir')
recursedown('./tests/test_srcdir/expected-results')
recursedown('./tests/test_static_remote')
recursedown('./tests/test_static_remote/expected-results')
recursedown('./tests/test_strict_mode')
recursedown('./tests/test_strict_mode/expected-results')
recursedown('./tests/test_string_resources')
recursedown('./tests/test_string_resources/expected-results')
recursedown('./tests/test_subworkflow_config')
recursedown('./tests/test_subworkflow_config/expected-results')
recursedown('./tests/test_subworkflows')
recursedown('./tests/test_subworkflows/expected-results')
recursedown('./tests/test_symlink_temp')
recursedown('./tests/test_symlink_temp/expected-results')
recursedown('./tests/test_symlink_time_handling')
recursedown('./tests/test_symlink_time_handling/expected-results')
recursedown('./tests/test_temp')
recursedown('./tests/test_temp/expected-results')
recursedown('./tests/test_temp_expand')
recursedown('./tests/test_temp_expand/expected-results')
recursedown('./tests/test_template_engine')
recursedown('./tests/test_template_engine/expected-results')
recursedown('./tests/test_tes')
recursedown('./tests/test_tes/expected-results')
recursedown('./tests/test_threads')
recursedown('./tests/test_threads/expected-results')
recursedown('./tests/test_threads0')
recursedown('./tests/test_threads0/expected-results')
recursedown('./tests/test_tibanna')
recursedown('./tests/test_tibanna/expected-results')
recursedown('./tests/test_tibanna/scripts')
recursedown('./tests/test_tmpdir')
recursedown('./tests/test_tmpdir/expected-results')
recursedown('./tests/test_touch')
recursedown('./tests/test_touch/expected-results')
recursedown('./tests/test_touch_pipeline_with_temp_dir')
recursedown('./tests/test_touch_pipeline_with_temp_dir/expected-results')
recursedown('./tests/test_touch_remote_prefix')
recursedown('./tests/test_touch_remote_prefix/expected-results')
recursedown('./tests/test_touch_with_directories')
recursedown('./tests/test_touch_with_directories/expected-results')
recursedown('./tests/test_unpack_dict')
recursedown('./tests/test_unpack_dict/expected-results')
recursedown('./tests/test_unpack_list')
recursedown('./tests/test_unpack_list/expected-results')
recursedown('./tests/test_until')
recursedown('./tests/test_until/expected-results')
recursedown('./tests/test_update_config')
recursedown('./tests/test_update_config/expected-results')
recursedown('./tests/test_url_include')
recursedown('./tests/test_url_include/expected-results')
recursedown('./tests/test_use_rule_same_module')
recursedown('./tests/test_use_rule_same_module/expected-results')
recursedown('./tests/test_validate')
recursedown('./tests/test_validate/expected-results')
recursedown('./tests/test_wildcard_count_ambiguity')
recursedown('./tests/test_wildcard_count_ambiguity/expected-results')
recursedown('./tests/test_wildcard_keyword')
recursedown('./tests/test_wildcard_keyword/expected-results')
recursedown('./tests/test_wrapper')
recursedown('./tests/test_wrapper/expected-results')
recursedown('./tests/test_xrootd')
recursedown('./tests/test_yaml_config')
recursedown('./tests/test_yaml_config/expected-results')
+ sed -r -i '1{/^#!/d}' snakemake/executors/jobscript.sh snakemake/executors/google_lifesciences_helper.py
+ sed -r -i 's@"python"@"/usr/bin/python3"@g' tests/test_linting.py
+ sed -r -i /sphinxcontrib-napoleon/d docs/requirements.txt
+ echo 'latex_engine = '\''xelatex'\'''
+ RPM_EC=0
++ jobs -p
+ exit 0
+ umask 022
+ cd /builddir/build/BUILD
+ cd snakemake-7.22.0
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1  '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ echo pyproject-rpm-macros
+ echo python3-devel
+ echo 'python3dist(pip) >= 19'
+ echo 'python3dist(packaging)'
+ '[' -f pyproject.toml ']'
+ echo '(python3dist(toml) if python3-devel < 3.11)'
+ rm -rfv '*.dist-info/'
+ '[' -f /usr/bin/python3 ']'
+ mkdir -p /builddir/build/BUILD/snakemake-7.22.0/.pyproject-builddir
Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.3s1rAT
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1  '
+ TMPDIR=/builddir/build/BUILD/snakemake-7.22.0/.pyproject-builddir
+ RPM_TOXENV=py311
+ HOSTNAME=rpmbuild
+ /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/snakemake-7.22.0/pyproject-wheeldir -x reports,messaging,google-cloud docs/requirements.txt
Handling sphinx >=3 from requirements file docs/requirements.txt
Requirement satisfied: sphinx >=3
   (installed: sphinx 5.3.0)
Handling sphinx-argparse from requirements file docs/requirements.txt
Requirement satisfied: sphinx-argparse
   (installed: sphinx-argparse 0.4.0)
Handling sphinx_rtd_theme from requirements file docs/requirements.txt
Requirement satisfied: sphinx_rtd_theme
   (installed: sphinx_rtd_theme 1.1.1)
Handling docutils from requirements file docs/requirements.txt
Requirement satisfied: docutils
   (installed: docutils 0.19)
Handling myst-parser from requirements file docs/requirements.txt
Requirement satisfied: myst-parser
   (installed: myst-parser 0.18.1)
Handling configargparse from requirements file docs/requirements.txt
Requirement satisfied: configargparse
   (installed: configargparse 1.5.3)
Handling appdirs from requirements file docs/requirements.txt
Requirement satisfied: appdirs
   (installed: appdirs 1.4.4)
Handling setuptools>=42 from build-system.requires
Requirement satisfied: setuptools>=42
   (installed: setuptools 65.5.1)
Handling tomli; python_version < "3.11" from build-system.requires
Ignoring alien requirement: tomli; python_version < "3.11"
HOOK STDOUT: running egg_info
HOOK STDOUT: creating snakemake.egg-info
HOOK STDOUT: writing snakemake.egg-info/PKG-INFO
HOOK STDOUT: writing dependency_links to snakemake.egg-info/dependency_links.txt
HOOK STDOUT: writing entry points to snakemake.egg-info/entry_points.txt
HOOK STDOUT: writing requirements to snakemake.egg-info/requires.txt
HOOK STDOUT: writing top-level names to snakemake.egg-info/top_level.txt
HOOK STDOUT: writing manifest file 'snakemake.egg-info/SOURCES.txt'
HOOK STDOUT: reading manifest file 'snakemake.egg-info/SOURCES.txt'
HOOK STDOUT: reading manifest template 'MANIFEST.in'
HOOK STDOUT: adding license file 'LICENSE.md'
HOOK STDOUT: adding license file 'AUTHORS.rst'
HOOK STDOUT: writing manifest file 'snakemake.egg-info/SOURCES.txt'
Handling wheel from get_requires_for_build_wheel
Requirement satisfied: wheel
   (installed: wheel 0.38.4)
HOOK STDOUT: running dist_info
HOOK STDOUT: writing snakemake.egg-info/PKG-INFO
HOOK STDOUT: writing dependency_links to snakemake.egg-info/dependency_links.txt
HOOK STDOUT: writing entry points to snakemake.egg-info/entry_points.txt
HOOK STDOUT: writing requirements to snakemake.egg-info/requires.txt
HOOK STDOUT: writing top-level names to snakemake.egg-info/top_level.txt
HOOK STDOUT: reading manifest file 'snakemake.egg-info/SOURCES.txt'
HOOK STDOUT: reading manifest template 'MANIFEST.in'
HOOK STDOUT: adding license file 'LICENSE.md'
HOOK STDOUT: adding license file 'AUTHORS.rst'
HOOK STDOUT: writing manifest file 'snakemake.egg-info/SOURCES.txt'
HOOK STDOUT: creating '/builddir/build/BUILD/snakemake-7.22.0/snakemake-7.22.0.dist-info'
Handling appdirs from hook generated metadata: Requires-Dist
Requirement satisfied: appdirs
   (installed: appdirs 1.4.4)
Handling configargparse from hook generated metadata: Requires-Dist
Requirement satisfied: configargparse
   (installed: configargparse 1.5.3)
Handling connection-pool (>=0.0.3) from hook generated metadata: Requires-Dist
Requirement not satisfied: connection-pool (>=0.0.3)
Handling datrie from hook generated metadata: Requires-Dist
Requirement not satisfied: datrie
Handling docutils from hook generated metadata: Requires-Dist
Requirement satisfied: docutils
   (installed: docutils 0.19)
Handling gitpython from hook generated metadata: Requires-Dist
Requirement not satisfied: gitpython
Handling humanfriendly from hook generated metadata: Requires-Dist
Requirement not satisfied: humanfriendly
Handling jinja2 (<4.0,>=3.0) from hook generated metadata: Requires-Dist
Requirement satisfied: jinja2 (<4.0,>=3.0)
   (installed: jinja2 3.0.3)
Handling jsonschema from hook generated metadata: Requires-Dist
Requirement not satisfied: jsonschema
Handling nbformat from hook generated metadata: Requires-Dist
Requirement not satisfied: nbformat
Handling psutil from hook generated metadata: Requires-Dist
Requirement not satisfied: psutil
Handling pulp (>=2.0) from hook generated metadata: Requires-Dist
Requirement not satisfied: pulp (>=2.0)
Handling pyyaml from hook generated metadata: Requires-Dist
Requirement satisfied: pyyaml
   (installed: pyyaml 6.0)
Handling requests from hook generated metadata: Requires-Dist
Requirement satisfied: requests
   (installed: requests 2.28.2)
Handling reretry from hook generated metadata: Requires-Dist
Requirement not satisfied: reretry
Handling smart-open (>=3.0) from hook generated metadata: Requires-Dist
Requirement not satisfied: smart-open (>=3.0)
Handling stopit from hook generated metadata: Requires-Dist
Requirement not satisfied: stopit
Handling tabulate from hook generated metadata: Requires-Dist
Requirement not satisfied: tabulate
Handling throttler from hook generated metadata: Requires-Dist
Requirement not satisfied: throttler
Handling toposort from hook generated metadata: Requires-Dist
Requirement not satisfied: toposort
Handling wrapt from hook generated metadata: Requires-Dist
Requirement not satisfied: wrapt
Handling yte (<2.0,>=1.0) from hook generated metadata: Requires-Dist
Requirement not satisfied: yte (<2.0,>=1.0)
Handling google-api-python-client ; extra == 'google-cloud' from hook generated metadata: Requires-Dist
Requirement not satisfied: google-api-python-client ; extra == 'google-cloud'
Handling google-cloud-storage ; extra == 'google-cloud' from hook generated metadata: Requires-Dist
Requirement not satisfied: google-cloud-storage ; extra == 'google-cloud'
Handling google-crc32c ; extra == 'google-cloud' from hook generated metadata: Requires-Dist
Requirement not satisfied: google-crc32c ; extra == 'google-cloud'
Handling oauth2client ; extra == 'google-cloud' from hook generated metadata: Requires-Dist
Requirement not satisfied: oauth2client ; extra == 'google-cloud'
Handling slacker ; extra == 'messaging' from hook generated metadata: Requires-Dist
Requirement not satisfied: slacker ; extra == 'messaging'
Handling eido ; extra == 'pep' from hook generated metadata: Requires-Dist
Ignoring alien requirement: eido ; extra == 'pep'
Handling peppy ; extra == 'pep' from hook generated metadata: Requires-Dist
Ignoring alien requirement: peppy ; extra == 'pep'
Handling pygments ; extra == 'reports' from hook generated metadata: Requires-Dist
Requirement satisfied: pygments ; extra == 'reports'
   (installed: pygments 2.13.0)
+ RPM_EC=0
++ jobs -p
+ exit 0
Wrote: /builddir/build/SRPMS/snakemake-7.22.0-1.fc39.buildreqs.nosrc.rpm
Child return code was: 11
Dynamic buildrequires detected
Going to install missing buildrequires. See root.log for details.
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -br  --target x86_64 --nodeps /builddir/build/SPECS/snakemake.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1676556891.257923/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x7f1df42ef2d0>timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.k_pz24a4:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueraiseExc=FalseprintOutput=True)
Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.k_pz24a4:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']
Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'f6d9fb062e554db7937ed977464b3ef6', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1676556891.257923/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.k_pz24a4:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;<mock-chroot>\\007"', '--setenv=PS1=<mock-chroot> \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -br  --target x86_64 --nodeps /builddir/build/SPECS/snakemake.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1676246400
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.i6qsWf
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf snakemake-7.22.0
+ /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/snakemake-7.22.0.tar.gz
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd snakemake-7.22.0
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/snakemake-7.11.0-docs-no-animated-demo.patch
+ /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f
+ '[' -z sP ']'
+ shebang_flags=-kasP
+ /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP .
recursedown('.')
recursedown('./.github')
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recursedown('./.github/workflows')
recursedown('./docs')
recursedown('./docs/_static')
recursedown('./docs/apidocs')
recursedown('./docs/apidocs/api_reference')
recursedown('./docs/apidocs/api_reference/internal')
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recursedown('./docs/getting_started/img')
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recursedown('./docs/project_info/img')
recursedown('./docs/snakefiles')
recursedown('./docs/snakefiles/images')
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recursedown('./images')
recursedown('./misc')
recursedown('./misc/nano')
recursedown('./misc/nano/syntax')
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recursedown('./playground')
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recursedown('./snakemake')
recursedown('./snakemake/caching')
recursedown('./snakemake/common')
recursedown('./snakemake/deployment')
recursedown('./snakemake/executors')
recursedown('./snakemake/executors/slurm')
recursedown('./snakemake/linting')
recursedown('./snakemake/remote')
recursedown('./snakemake/report')
recursedown('./snakemake/report/data')
recursedown('./snakemake/report/template')
recursedown('./snakemake/report/template/components')
recursedown('./snakemake/template_rendering')
recursedown('./snakemake/unit_tests')
recursedown('./snakemake/unit_tests/templates')
recursedown('./tests')
recursedown('./tests/knapsack')
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recursedown('./tests/linting/absolute_paths')
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recursedown('./tests/linting/envvars')
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recursedown('./tests/linting/missing_software_definition')
recursedown('./tests/linting/mixed_func_and_rules')
recursedown('./tests/linting/not_used_params')
recursedown('./tests/linting/params_prefix')
recursedown('./tests/linting/path_add')
recursedown('./tests/linting/singularity')
recursedown('./tests/linting/tab_usage')
recursedown('./tests/linting/version')
recursedown('./tests/profile')
recursedown('./tests/resources')
recursedown('./tests/resources/slurmcluster')
recursedown("./tests/test (with parenthese's)")
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recursedown('./tests/test01')
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recursedown('./tests/test_paramspace_single_wildcard/expected-results/results/sep')
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recursedown('./tests/test_paramspace_single_wildcard/expected-results/results/sep/simulations')
recursedown('./tests/test_paramspace_single_wildcard/expected-results/results/sep/simulations/alpha_is_1')
recursedown('./tests/test_paramspace_single_wildcard/expected-results/results/sep/simulations/alpha_is_1/beta_is_0.1')
recursedown('./tests/test_paramspace_single_wildcard/expected-results/results/sep/simulations/alpha_is_2')
recursedown('./tests/test_paramspace_single_wildcard/expected-results/results/sep/simulations/alpha_is_2/beta_is_0.0')
recursedown('./tests/test_paramspace_single_wildcard/expected-results/results/sep_and_pattern')
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recursedown('./tests/test_paramspace_single_wildcard/expected-results/results/two')
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recursedown('./tests/test_paramspace_single_wildcard/scripts')
recursedown('./tests/test_parser')
recursedown('./tests/test_parser/expected-results')
recursedown('./tests/test_parsing_terminal_comment_following_statement')
recursedown('./tests/test_parsing_terminal_comment_following_statement/expected-results')
recursedown('./tests/test_pathlib')
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recursedown('./tests/test_pathlib/expected-results/outdir')
recursedown('./tests/test_pathlib/expected-results/outdir/function_unpacking')
recursedown('./tests/test_pathlib_missing_file')
recursedown('./tests/test_pathlib_missing_file/expected-results')
recursedown('./tests/test_peppy')
recursedown('./tests/test_peppy/expected-results')
recursedown('./tests/test_peppy/pep')
recursedown('./tests/test_peppy/workflow')
recursedown('./tests/test_peppy/workflow/schemas')
recursedown('./tests/test_persistent_dict')
recursedown('./tests/test_persistent_dict/expected-results')
recursedown('./tests/test_pipe_depend')
recursedown('./tests/test_pipe_depend/expected-results')
recursedown('./tests/test_pipes')
recursedown('./tests/test_pipes/expected-results')
recursedown('./tests/test_pipes2')
recursedown('./tests/test_pipes2/expected-results')
recursedown('./tests/test_pipes_fail')
recursedown('./tests/test_pipes_fail/expected-results')
recursedown('./tests/test_pipes_multiple')
recursedown('./tests/test_pipes_multiple/expected-results')
recursedown('./tests/test_profile')
recursedown('./tests/test_profile/expected-results')
recursedown('./tests/test_protected_symlink_output')
recursedown('./tests/test_protected_symlink_output/expected-results')
recursedown('./tests/test_r_wrapper')
recursedown('./tests/test_remote')
recursedown('./tests/test_remote/expected-results')
recursedown('./tests/test_remote_auto')
recursedown('./tests/test_remote_auto/expected-results')
recursedown('./tests/test_remote_azure')
recursedown('./tests/test_remote_gs')
recursedown('./tests/test_remote_gs/expected-results')
recursedown('./tests/test_remote_http')
recursedown('./tests/test_remote_http/expected-results')
recursedown('./tests/test_remote_irods')
recursedown('./tests/test_remote_irods/expected-results')
recursedown('./tests/test_remote_irods/setup-data')
recursedown('./tests/test_remote_irods/test-data')
recursedown('./tests/test_remote_log')
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recursedown('./tests/test_remote_ncbi')
recursedown('./tests/test_remote_ncbi/expected-results')
recursedown('./tests/test_remote_ncbi_simple')
recursedown('./tests/test_remote_ncbi_simple/expected-results')
recursedown('./tests/test_remote_sftp')
./setup.py: no change
./versioneer.py: no change
./docs/conf.py: updating
./docs/apidocs/conf.py: updating
./examples/hello-world/scripts/plot-hist.py: no change
./snakemake/__init__.py: no change
./snakemake/__main__.py: no change
./snakemake/_version.py: no change
./snakemake/benchmark.py: no change
./snakemake/checkpoints.py: no change
./snakemake/cwl.py: no change
./snakemake/dag.py: no change
./snakemake/decorators.py: no change
./snakemake/exceptions.py: no change
./snakemake/gui.py: no change
./snakemake/io.py: no change
./snakemake/jobs.py: no change
./snakemake/logging.py: no change
./snakemake/modules.py: no change
./snakemake/notebook.py: no change
./snakemake/output_index.py: no change
./snakemake/parser.py: no change
./snakemake/path_modifier.py: no change
./snakemake/persistence.py: no change
./snakemake/resources.py: no change
./snakemake/ruleinfo.py: no change
./snakemake/rules.py: no change
./snakemake/scheduler.py: no change
./snakemake/script.py: no change
./snakemake/shell.py: no change
./snakemake/sourcecache.py: no change
./snakemake/stats.py: no change
./snakemake/target_jobs.py: no change
./snakemake/utils.py: no change
./snakemake/workflow.py: no change
./snakemake/wrapper.py: no change
./snakemake/caching/__init__.py: no change
./snakemake/caching/hash.py: no change
./snakemake/caching/local.py: no change
./snakemake/caching/remote.py: no change
./snakemake/common/__init__.py: no change
./snakemake/common/tbdstring.py: no change
./snakemake/deployment/__init__.py: no change
./snakemake/deployment/conda.py: no change
./snakemake/deployment/containerize.py: no change
./snakemake/deployment/env_modules.py: no change
./snakemake/deployment/singularity.py: no change
./snakemake/executors/__init__.py: no change
./snakemake/executors/common.py: no change
./snakemake/executors/flux.py: no change
./snakemake/executors/ga4gh_tes.py: no change
./snakemake/executors/google_lifesciences.py: no change
./snakemake/executors/google_lifesciences_helper.py: updating
./snakemake/executors/slurm/__init__.py: no change
./snakemake/executors/slurm/slurm_jobstep.py: no change
./snakemake/executors/slurm/slurm_submit.py: no change
./snakemake/linting/__init__.py: no change
./snakemake/linting/links.py: no change
./snakemake/linting/rules.py: no change
./snakemake/linting/snakefiles.py: no change
./snakemake/remote/AzBlob.py: no change
./snakemake/remote/EGA.py: no change
./snakemake/remote/FTP.py: no change
./snakemake/remote/GS.py: no change
./snakemake/remote/HTTP.py: no change
./snakemake/remote/NCBI.py: no change
./snakemake/remote/S3.py: no change
./snakemake/remote/S3Mocked.py: no change
./snakemake/remote/SFTP.py: no change
./snakemake/remote/XRootD.py: no change
./snakemake/remote/__init__.py: no change
./snakemake/remote/dropbox.py: no change
./snakemake/remote/gfal.py: no change
./snakemake/remote/gridftp.py: no change
./snakemake/remote/iRODS.py: no change
./snakemake/remote/webdav.py: no change
./snakemake/remote/zenodo.py: no change
./snakemake/report/__init__.py: no change
./snakemake/report/rulegraph_spec.py: no change
./snakemake/report/data/__init__.py: no change
./snakemake/report/data/categories.py: no change
./snakemake/report/data/common.py: no change
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./snakemake/report/data/rulegraph.py: no change
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./snakemake/report/data/timeline.py: no change
./snakemake/report/template/__init__.py: no change
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./tests/common.py: no change
./tests/conftest.py: no change
./tests/test_expand.py: no change
./tests/test_google_lifesciences.py: no change
./tests/test_io.py: no change
./tests/test_kubernetes.py: no change
./tests/test_linting.py: no change
./tests/test_persistence.py: no change
./tests/test_schema.py: no change
./tests/test_script.py: no change
./tests/test_slurm.py: no change
./tests/test_tes.py: no change
./tests/test_tibanna.py: no change
./tests/testapi.py: no change
./tests/tests.py: no change
./tests/test14/qsub.py: updating
./tests/test_benchmark/script.py: updating
./tests/test_conda_python_script/test_script.py: no change
./tests/test_filegraph/scripts/vis.py: no change
./tests/test_generate_unit_tests/expected-results/.tests/unit/test_a.py: no change
./tests/test_generate_unit_tests/expected-results/.tests/unit/test_all.py: no change
./tests/test_generate_unit_tests/expected-results/.tests/unit/test_b.py: no change
./tests/test_get_log_both/wrapper.py: no change
./tests/test_get_log_complex/wrapper.py: no change
./tests/test_get_log_none/wrapper.py: no change
./tests/test_get_log_stderr/wrapper.py: no change
./tests/test_get_log_stdout/wrapper.py: no change
./tests/test_github_issue1158/qsub.py: updating
./tests/test_github_issue627/job.py: updating
./tests/test_github_issue_14/local_script.py: no change
./tests/test_github_issue_14/pythonTest.py: updating
./tests/test_handover/script.py: no change
./tests/test_issue1046/my_wrapper/wrapper.py: no change
./tests/test_issue916/local_script.py: no change
./tests/test_issue916/pythonTest.py: updating
./tests/test_job_properties/qsub.py: updating
./tests/test_local_import/bar.py: no change
./tests/test_local_import/foo/__init__.py: no change
./tests/test_paramspace/scripts/simulate.py: no change
./tests/test_paramspace_single_wildcard/scripts/simulate.py: no change
./tests/test_report_display_code/test.py: no change
./tests/test_restartable_job_cmd_exit_1/qsub.py: updating
./tests/test_restartable_job_qsub_exit_1/qsub.py: updating
./tests/test_script/scripts/test.py: no change
./tests/test_script_py/scripts/test.py: no change
./tests/test_singularity/script.py: no change
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./tests/test_static_remote/S3MockedForStaticTest.py: no change
./tests/test_static_remote/__init__.py: no change
./tests/test_string_resources/qsub.py: updating
./tests/test_tibanna/cleanup.py: no change
./tests/test_tibanna/scripts/step2.py: no change
Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.sP2jvv
recursedown('./tests/test_remote_sftp/expected-results')
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recursedown('./tests/test_remote_zenodo/expected-results')
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recursedown('./tests/test_report/.snakemake/metadata')
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recursedown('./tests/test_report/envs')
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recursedown('./tests/test_report_dir')
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recursedown('./tests/test_report_dir/test')
recursedown('./tests/test_report_dir/test/js')
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recursedown('./tests/test_report_display_code/expected-results')
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recursedown('./tests/test_restartable_job_cmd_exit_1/expected-results')
recursedown('./tests/test_restartable_job_qsub_exit_1')
recursedown('./tests/test_restartable_job_qsub_exit_1/expected-results')
recursedown('./tests/test_retries')
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recursedown('./tests/test_retries_not_overriden')
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recursedown('./tests/test_run_namedlist')
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recursedown('./tests/test_same_wildcard')
recursedown('./tests/test_same_wildcard/expected-results')
recursedown('./tests/test_scatter_gather')
recursedown('./tests/test_scatter_gather/expected-results')
recursedown('./tests/test_scatter_gather/expected-results/gathered')
recursedown('./tests/test_scatter_gather/expected-results/splitted')
recursedown('./tests/test_scatter_gather_multiple_processes')
recursedown('./tests/test_scatter_gather_multiple_processes/expected-results')
recursedown('./tests/test_scatter_gather_multiple_processes/expected-results/gathered')
recursedown('./tests/test_scatter_gather_multiple_processes/expected-results/split_a')
recursedown('./tests/test_scatter_gather_multiple_processes/expected-results/split_b')
recursedown('./tests/test_script')
recursedown('./tests/test_script/envs')
recursedown('./tests/test_script/expected-results')
recursedown('./tests/test_script/scripts')
recursedown('./tests/test_script_py')
recursedown('./tests/test_script_py/expected-results')
recursedown('./tests/test_script_py/scripts')
recursedown('./tests/test_service_jobs')
recursedown('./tests/test_service_jobs/expected-results')
recursedown('./tests/test_set_resources')
recursedown('./tests/test_set_resources/expected-results')
recursedown('./tests/test_shadow')
recursedown('./tests/test_shadow/expected-results')
recursedown('./tests/test_shadow_copy')
recursedown('./tests/test_shadow_copy/expected-results')
recursedown('./tests/test_shadow_prefix')
recursedown('./tests/test_shadow_prefix/expected-results')
recursedown('./tests/test_shadowed_log')
recursedown('./tests/test_shadowed_log/expected-results')
recursedown('./tests/test_shell')
recursedown('./tests/test_shell/expected-results')
recursedown('./tests/test_singularity')
recursedown('./tests/test_singularity/expected-results')
recursedown('./tests/test_singularity_conda')
recursedown('./tests/test_singularity_conda/expected-results')
recursedown('./tests/test_singularity_global')
recursedown('./tests/test_singularity_global/expected-results')
recursedown('./tests/test_singularity_module')
recursedown('./tests/test_singularity_module/expected-results')
recursedown('./tests/test_singularity_none')
recursedown('./tests/test_singularity_none/expected-results')
recursedown('./tests/test_slurm_mpi')
recursedown('./tests/test_slurm_mpi/envs')
recursedown('./tests/test_slurm_mpi/expected-results')
recursedown('./tests/test_solver')
recursedown('./tests/test_solver/expected-results')
recursedown('./tests/test_source_path')
recursedown('./tests/test_source_path/expected-results')
recursedown('./tests/test_source_path/workflow')
recursedown('./tests/test_source_path/workflow/resources')
recursedown('./tests/test_spaces_in_fnames')
recursedown('./tests/test_spaces_in_fnames/expected-results')
recursedown('./tests/test_speed')
recursedown('./tests/test_srcdir')
recursedown('./tests/test_srcdir/expected-results')
recursedown('./tests/test_static_remote')
recursedown('./tests/test_static_remote/expected-results')
recursedown('./tests/test_strict_mode')
recursedown('./tests/test_strict_mode/expected-results')
recursedown('./tests/test_string_resources')
recursedown('./tests/test_string_resources/expected-results')
recursedown('./tests/test_subworkflow_config')
recursedown('./tests/test_subworkflow_config/expected-results')
recursedown('./tests/test_subworkflows')
recursedown('./tests/test_subworkflows/expected-results')
recursedown('./tests/test_symlink_temp')
recursedown('./tests/test_symlink_temp/expected-results')
recursedown('./tests/test_symlink_time_handling')
recursedown('./tests/test_symlink_time_handling/expected-results')
recursedown('./tests/test_temp')
recursedown('./tests/test_temp/expected-results')
recursedown('./tests/test_temp_expand')
recursedown('./tests/test_temp_expand/expected-results')
recursedown('./tests/test_template_engine')
recursedown('./tests/test_template_engine/expected-results')
recursedown('./tests/test_tes')
recursedown('./tests/test_tes/expected-results')
recursedown('./tests/test_threads')
recursedown('./tests/test_threads/expected-results')
recursedown('./tests/test_threads0')
recursedown('./tests/test_threads0/expected-results')
recursedown('./tests/test_tibanna')
recursedown('./tests/test_tibanna/expected-results')
recursedown('./tests/test_tibanna/scripts')
recursedown('./tests/test_tmpdir')
recursedown('./tests/test_tmpdir/expected-results')
recursedown('./tests/test_touch')
recursedown('./tests/test_touch/expected-results')
recursedown('./tests/test_touch_pipeline_with_temp_dir')
recursedown('./tests/test_touch_pipeline_with_temp_dir/expected-results')
recursedown('./tests/test_touch_remote_prefix')
recursedown('./tests/test_touch_remote_prefix/expected-results')
recursedown('./tests/test_touch_with_directories')
recursedown('./tests/test_touch_with_directories/expected-results')
recursedown('./tests/test_unpack_dict')
recursedown('./tests/test_unpack_dict/expected-results')
recursedown('./tests/test_unpack_list')
recursedown('./tests/test_unpack_list/expected-results')
recursedown('./tests/test_until')
recursedown('./tests/test_until/expected-results')
recursedown('./tests/test_update_config')
recursedown('./tests/test_update_config/expected-results')
recursedown('./tests/test_url_include')
recursedown('./tests/test_url_include/expected-results')
recursedown('./tests/test_use_rule_same_module')
recursedown('./tests/test_use_rule_same_module/expected-results')
recursedown('./tests/test_validate')
recursedown('./tests/test_validate/expected-results')
recursedown('./tests/test_wildcard_count_ambiguity')
recursedown('./tests/test_wildcard_count_ambiguity/expected-results')
recursedown('./tests/test_wildcard_keyword')
recursedown('./tests/test_wildcard_keyword/expected-results')
recursedown('./tests/test_wrapper')
recursedown('./tests/test_wrapper/expected-results')
recursedown('./tests/test_xrootd')
recursedown('./tests/test_yaml_config')
recursedown('./tests/test_yaml_config/expected-results')
+ sed -r -i '1{/^#!/d}' snakemake/executors/jobscript.sh snakemake/executors/google_lifesciences_helper.py
+ sed -r -i 's@"python"@"/usr/bin/python3"@g' tests/test_linting.py
+ sed -r -i /sphinxcontrib-napoleon/d docs/requirements.txt
+ echo 'latex_engine = '\''xelatex'\'''
+ RPM_EC=0
++ jobs -p
+ exit 0
+ umask 022
+ cd /builddir/build/BUILD
+ cd snakemake-7.22.0
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1  '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ echo pyproject-rpm-macros
+ echo python3-devel
+ echo 'python3dist(pip) >= 19'
+ echo 'python3dist(packaging)'
+ '[' -f pyproject.toml ']'
+ echo '(python3dist(toml) if python3-devel < 3.11)'
+ rm -rfv '*.dist-info/'
+ '[' -f /usr/bin/python3 ']'
+ mkdir -p /builddir/build/BUILD/snakemake-7.22.0/.pyproject-builddir
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1  '
+ TMPDIR=/builddir/build/BUILD/snakemake-7.22.0/.pyproject-builddir
+ RPM_TOXENV=py311
+ HOSTNAME=rpmbuild
+ /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/snakemake-7.22.0/pyproject-wheeldir -x reports,messaging,google-cloud docs/requirements.txt
Handling sphinx >=3 from requirements file docs/requirements.txt
Requirement satisfied: sphinx >=3
   (installed: sphinx 5.3.0)
Handling sphinx-argparse from requirements file docs/requirements.txt
Requirement satisfied: sphinx-argparse
   (installed: sphinx-argparse 0.4.0)
Handling sphinx_rtd_theme from requirements file docs/requirements.txt
Requirement satisfied: sphinx_rtd_theme
   (installed: sphinx_rtd_theme 1.1.1)
Handling docutils from requirements file docs/requirements.txt
Requirement satisfied: docutils
   (installed: docutils 0.19)
Handling myst-parser from requirements file docs/requirements.txt
Requirement satisfied: myst-parser
   (installed: myst-parser 0.18.1)
Handling configargparse from requirements file docs/requirements.txt
Requirement satisfied: configargparse
   (installed: configargparse 1.5.3)
Handling appdirs from requirements file docs/requirements.txt
Requirement satisfied: appdirs
   (installed: appdirs 1.4.4)
Handling setuptools>=42 from build-system.requires
Requirement satisfied: setuptools>=42
   (installed: setuptools 65.5.1)
Handling tomli; python_version < "3.11" from build-system.requires
Ignoring alien requirement: tomli; python_version < "3.11"
HOOK STDOUT: running egg_info
HOOK STDOUT: creating snakemake.egg-info
HOOK STDOUT: writing snakemake.egg-info/PKG-INFO
HOOK STDOUT: writing dependency_links to snakemake.egg-info/dependency_links.txt
HOOK STDOUT: writing entry points to snakemake.egg-info/entry_points.txt
HOOK STDOUT: writing requirements to snakemake.egg-info/requires.txt
HOOK STDOUT: writing top-level names to snakemake.egg-info/top_level.txt
HOOK STDOUT: writing manifest file 'snakemake.egg-info/SOURCES.txt'
HOOK STDOUT: reading manifest file 'snakemake.egg-info/SOURCES.txt'
HOOK STDOUT: reading manifest template 'MANIFEST.in'
HOOK STDOUT: adding license file 'LICENSE.md'
HOOK STDOUT: adding license file 'AUTHORS.rst'
HOOK STDOUT: writing manifest file 'snakemake.egg-info/SOURCES.txt'
Handling wheel from get_requires_for_build_wheel
Requirement satisfied: wheel
   (installed: wheel 0.38.4)
HOOK STDOUT: running dist_info
HOOK STDOUT: writing snakemake.egg-info/PKG-INFO
HOOK STDOUT: writing dependency_links to snakemake.egg-info/dependency_links.txt
HOOK STDOUT: writing entry points to snakemake.egg-info/entry_points.txt
HOOK STDOUT: writing requirements to snakemake.egg-info/requires.txt
HOOK STDOUT: writing top-level names to snakemake.egg-info/top_level.txt
HOOK STDOUT: reading manifest file 'snakemake.egg-info/SOURCES.txt'
HOOK STDOUT: reading manifest template 'MANIFEST.in'
HOOK STDOUT: adding license file 'LICENSE.md'
HOOK STDOUT: adding license file 'AUTHORS.rst'
HOOK STDOUT: writing manifest file 'snakemake.egg-info/SOURCES.txt'
HOOK STDOUT: creating '/builddir/build/BUILD/snakemake-7.22.0/snakemake-7.22.0.dist-info'
Handling appdirs from hook generated metadata: Requires-Dist
Requirement satisfied: appdirs
   (installed: appdirs 1.4.4)
Handling configargparse from hook generated metadata: Requires-Dist
Requirement satisfied: configargparse
   (installed: configargparse 1.5.3)
Handling connection-pool (>=0.0.3) from hook generated metadata: Requires-Dist
Requirement satisfied: connection-pool (>=0.0.3)
   (installed: connection-pool 0.0.3)
Handling datrie from hook generated metadata: Requires-Dist
Requirement satisfied: datrie
   (installed: datrie 0.8.2)
Handling docutils from hook generated metadata: Requires-Dist
Requirement satisfied: docutils
   (installed: docutils 0.19)
Handling gitpython from hook generated metadata: Requires-Dist
Requirement satisfied: gitpython
   (installed: gitpython 3.1.30)
Handling humanfriendly from hook generated metadata: Requires-Dist
Requirement satisfied: humanfriendly
   (installed: humanfriendly 10.0)
Handling jinja2 (<4.0,>=3.0) from hook generated metadata: Requires-Dist
Requirement satisfied: jinja2 (<4.0,>=3.0)
   (installed: jinja2 3.0.3)
Handling jsonschema from hook generated metadata: Requires-Dist
Requirement satisfied: jsonschema
   (installed: jsonschema 4.17.3)
Handling nbformat from hook generated metadata: Requires-Dist
Requirement satisfied: nbformat
   (installed: nbformat 5.7.0)
Handling psutil from hook generated metadata: Requires-Dist
Requirement satisfied: psutil
   (installed: psutil 5.9.2)
Handling pulp (>=2.0) from hook generated metadata: Requires-Dist
Requirement satisfied: pulp (>=2.0)
   (installed: pulp 2.6.0)
Handling pyyaml from hook generated metadata: Requires-Dist
Requirement satisfied: pyyaml
   (installed: pyyaml 6.0)
Handling requests from hook generated metadata: Requires-Dist
Requirement satisfied: requests
   (installed: requests 2.28.2)
Handling reretry from hook generated metadata: Requires-Dist
Requirement satisfied: reretry
   (installed: reretry 0.11.8)
Handling smart-open (>=3.0) from hook generated metadata: Requires-Dist
Requirement satisfied: smart-open (>=3.0)
   (installed: smart-open 5.2.1)
Handling stopit from hook generated metadata: Requires-Dist
Requirement satisfied: stopit
   (installed: stopit 1.1.2)
Handling tabulate from hook generated metadata: Requires-Dist
Requirement satisfied: tabulate
   (installed: tabulate 0.9.0)
Handling throttler from hook generated metadata: Requires-Dist
Requirement satisfied: throttler
   (installed: throttler 1.2.2)
Handling toposort from hook generated metadata: Requires-Dist
Requirement satisfied: toposort
   (installed: toposort 1.9)
Handling wrapt from hook generated metadata: Requires-Dist
Requirement satisfied: wrapt
   (installed: wrapt 1.14.1)
Handling yte (<2.0,>=1.0) from hook generated metadata: Requires-Dist
Requirement satisfied: yte (<2.0,>=1.0)
   (installed: yte 1.5.1)
Handling google-api-python-client ; extra == 'google-cloud' from hook generated metadata: Requires-Dist
Requirement satisfied: google-api-python-client ; extra == 'google-cloud'
   (installed: google-api-python-client 2.78.0)
Handling google-cloud-storage ; extra == 'google-cloud' from hook generated metadata: Requires-Dist
Requirement satisfied: google-cloud-storage ; extra == 'google-cloud'
   (installed: google-cloud-storage 2.7.0)
Handling google-crc32c ; extra == 'google-cloud' from hook generated metadata: Requires-Dist
Requirement satisfied: google-crc32c ; extra == 'google-cloud'
   (installed: google-crc32c 1.1.2)
Handling oauth2client ; extra == 'google-cloud' from hook generated metadata: Requires-Dist
Requirement satisfied: oauth2client ; extra == 'google-cloud'
   (installed: oauth2client 4.1.3)
Handling slacker ; extra == 'messaging' from hook generated metadata: Requires-Dist
Requirement satisfied: slacker ; extra == 'messaging'
   (installed: slacker 0.14.0)
Handling eido ; extra == 'pep' from hook generated metadata: Requires-Dist
Ignoring alien requirement: eido ; extra == 'pep'
Handling peppy ; extra == 'pep' from hook generated metadata: Requires-Dist
Ignoring alien requirement: peppy ; extra == 'pep'
Handling pygments ; extra == 'reports' from hook generated metadata: Requires-Dist
Requirement satisfied: pygments ; extra == 'reports'
   (installed: pygments 2.13.0)
+ RPM_EC=0
++ jobs -p
+ exit 0
Wrote: /builddir/build/SRPMS/snakemake-7.22.0-1.fc39.buildreqs.nosrc.rpm
Child return code was: 11
Dynamic buildrequires detected
Going to install missing buildrequires. See root.log for details.
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -ba --noprep  --target x86_64 --nodeps /builddir/build/SPECS/snakemake.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1676556891.257923/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x7f1df42ef2d0>timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.k_pz24a4:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=True)
Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.k_pz24a4:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']
Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '266df5af4a0c401db0d9a881428ac245', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1676556891.257923/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.k_pz24a4:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;<mock-chroot>\\007"', '--setenv=PS1=<mock-chroot> \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -ba --noprep  --target x86_64 --nodeps /builddir/build/SPECS/snakemake.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1676246400
Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.xH39QO
+ umask 022
+ cd /builddir/build/BUILD
+ cd snakemake-7.22.0
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1  '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ echo pyproject-rpm-macros
+ echo python3-devel
+ echo 'python3dist(pip) >= 19'
+ echo 'python3dist(packaging)'
+ '[' -f pyproject.toml ']'
+ echo '(python3dist(toml) if python3-devel < 3.11)'
+ rm -rfv snakemake-7.22.0.dist-info/
removed 'snakemake-7.22.0.dist-info/AUTHORS.rst'
removed 'snakemake-7.22.0.dist-info/LICENSE.md'
removed 'snakemake-7.22.0.dist-info/METADATA'
removed 'snakemake-7.22.0.dist-info/entry_points.txt'
removed 'snakemake-7.22.0.dist-info/top_level.txt'
removed directory 'snakemake-7.22.0.dist-info/'
+ '[' -f /usr/bin/python3 ']'
+ mkdir -p /builddir/build/BUILD/snakemake-7.22.0/.pyproject-builddir
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1  '
+ TMPDIR=/builddir/build/BUILD/snakemake-7.22.0/.pyproject-builddir
+ RPM_TOXENV=py311
+ HOSTNAME=rpmbuild
+ /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/snakemake-7.22.0/pyproject-wheeldir -x reports,messaging,google-cloud docs/requirements.txt
Handling sphinx >=3 from requirements file docs/requirements.txt
Requirement satisfied: sphinx >=3
   (installed: sphinx 5.3.0)
Handling sphinx-argparse from requirements file docs/requirements.txt
Requirement satisfied: sphinx-argparse
   (installed: sphinx-argparse 0.4.0)
Handling sphinx_rtd_theme from requirements file docs/requirements.txt
Requirement satisfied: sphinx_rtd_theme
   (installed: sphinx_rtd_theme 1.1.1)
Handling docutils from requirements file docs/requirements.txt
Requirement satisfied: docutils
   (installed: docutils 0.19)
Handling myst-parser from requirements file docs/requirements.txt
Requirement satisfied: myst-parser
   (installed: myst-parser 0.18.1)
Handling configargparse from requirements file docs/requirements.txt
Requirement satisfied: configargparse
   (installed: configargparse 1.5.3)
Handling appdirs from requirements file docs/requirements.txt
Requirement satisfied: appdirs
   (installed: appdirs 1.4.4)
Handling setuptools>=42 from build-system.requires
Requirement satisfied: setuptools>=42
   (installed: setuptools 65.5.1)
Handling tomli; python_version < "3.11" from build-system.requires
Ignoring alien requirement: tomli; python_version < "3.11"
HOOK STDOUT: running egg_info
HOOK STDOUT: writing snakemake.egg-info/PKG-INFO
HOOK STDOUT: writing dependency_links to snakemake.egg-info/dependency_links.txt
HOOK STDOUT: writing entry points to snakemake.egg-info/entry_points.txt
HOOK STDOUT: writing requirements to snakemake.egg-info/requires.txt
HOOK STDOUT: writing top-level names to snakemake.egg-info/top_level.txt
HOOK STDOUT: reading manifest file 'snakemake.egg-info/SOURCES.txt'
HOOK STDOUT: reading manifest template 'MANIFEST.in'
HOOK STDOUT: adding license file 'LICENSE.md'
HOOK STDOUT: adding license file 'AUTHORS.rst'
HOOK STDOUT: writing manifest file 'snakemake.egg-info/SOURCES.txt'
Handling wheel from get_requires_for_build_wheel
Requirement satisfied: wheel
   (installed: wheel 0.38.4)
HOOK STDOUT: running dist_info
HOOK STDOUT: writing snakemake.egg-info/PKG-INFO
HOOK STDOUT: writing dependency_links to snakemake.egg-info/dependency_links.txt
HOOK STDOUT: writing entry points to snakemake.egg-info/entry_points.txt
HOOK STDOUT: writing requirements to snakemake.egg-info/requires.txt
HOOK STDOUT: writing top-level names to snakemake.egg-info/top_level.txt
HOOK STDOUT: reading manifest file 'snakemake.egg-info/SOURCES.txt'
HOOK STDOUT: reading manifest template 'MANIFEST.in'
HOOK STDOUT: adding license file 'LICENSE.md'
HOOK STDOUT: adding license file 'AUTHORS.rst'
HOOK STDOUT: writing manifest file 'snakemake.egg-info/SOURCES.txt'
HOOK STDOUT: creating '/builddir/build/BUILD/snakemake-7.22.0/snakemake-7.22.0.dist-info'
Handling appdirs from hook generated metadata: Requires-Dist
Requirement satisfied: appdirs
   (installed: appdirs 1.4.4)
Handling configargparse from hook generated metadata: Requires-Dist
Requirement satisfied: configargparse
   (installed: configargparse 1.5.3)
Handling connection-pool (>=0.0.3) from hook generated metadata: Requires-Dist
Requirement satisfied: connection-pool (>=0.0.3)
   (installed: connection-pool 0.0.3)
Handling datrie from hook generated metadata: Requires-Dist
Requirement satisfied: datrie
   (installed: datrie 0.8.2)
Handling docutils from hook generated metadata: Requires-Dist
Requirement satisfied: docutils
   (installed: docutils 0.19)
Handling gitpython from hook generated metadata: Requires-Dist
Requirement satisfied: gitpython
   (installed: gitpython 3.1.30)
Handling humanfriendly from hook generated metadata: Requires-Dist
Requirement satisfied: humanfriendly
   (installed: humanfriendly 10.0)
Handling jinja2 (<4.0,>=3.0) from hook generated metadata: Requires-Dist
Requirement satisfied: jinja2 (<4.0,>=3.0)
   (installed: jinja2 3.0.3)
Handling jsonschema from hook generated metadata: Requires-Dist
Requirement satisfied: jsonschema
   (installed: jsonschema 4.17.3)
Handling nbformat from hook generated metadata: Requires-Dist
Requirement satisfied: nbformat
   (installed: nbformat 5.7.0)
Handling psutil from hook generated metadata: Requires-Dist
Requirement satisfied: psutil
   (installed: psutil 5.9.2)
Handling pulp (>=2.0) from hook generated metadata: Requires-Dist
Requirement satisfied: pulp (>=2.0)
   (installed: pulp 2.6.0)
Handling pyyaml from hook generated metadata: Requires-Dist
Requirement satisfied: pyyaml
   (installed: pyyaml 6.0)
Handling requests from hook generated metadata: Requires-Dist
Requirement satisfied: requests
   (installed: requests 2.28.2)
Handling reretry from hook generated metadata: Requires-Dist
Requirement satisfied: reretry
   (installed: reretry 0.11.8)
Handling smart-open (>=3.0) from hook generated metadata: Requires-Dist
Requirement satisfied: smart-open (>=3.0)
   (installed: smart-open 5.2.1)
Handling stopit from hook generated metadata: Requires-Dist
Requirement satisfied: stopit
   (installed: stopit 1.1.2)
Handling tabulate from hook generated metadata: Requires-Dist
Requirement satisfied: tabulate
   (installed: tabulate 0.9.0)
Handling throttler from hook generated metadata: Requires-Dist
Requirement satisfied: throttler
   (installed: throttler 1.2.2)
Handling toposort from hook generated metadata: Requires-Dist
Requirement satisfied: toposort
   (installed: toposort 1.9)
Handling wrapt from hook generated metadata: Requires-Dist
Requirement satisfied: wrapt
   (installed: wrapt 1.14.1)
Handling yte (<2.0,>=1.0) from hook generated metadata: Requires-Dist
Requirement satisfied: yte (<2.0,>=1.0)
   (installed: yte 1.5.1)
Handling google-api-python-client ; extra == 'google-cloud' from hook generated metadata: Requires-Dist
Requirement satisfied: google-api-python-client ; extra == 'google-cloud'
   (installed: google-api-python-client 2.78.0)
Handling google-cloud-storage ; extra == 'google-cloud' from hook generated metadata: Requires-Dist
Requirement satisfied: google-cloud-storage ; extra == 'google-cloud'
   (installed: google-cloud-storage 2.7.0)
Handling google-crc32c ; extra == 'google-cloud' from hook generated metadata: Requires-Dist
Requirement satisfied: google-crc32c ; extra == 'google-cloud'
   (installed: google-crc32c 1.1.2)
Handling oauth2client ; extra == 'google-cloud' from hook generated metadata: Requires-Dist
Requirement satisfied: oauth2client ; extra == 'google-cloud'
   (installed: oauth2client 4.1.3)
Handling slacker ; extra == 'messaging' from hook generated metadata: Requires-Dist
Requirement satisfied: slacker ; extra == 'messaging'
   (installed: slacker 0.14.0)
Handling eido ; extra == 'pep' from hook generated metadata: Requires-Dist
Ignoring alien requirement: eido ; extra == 'pep'
Handling peppy ; extra == 'pep' from hook generated metadata: Requires-Dist
Ignoring alien requirement: peppy ; extra == 'pep'
Handling pygments ; extra == 'reports' from hook generated metadata: Requires-Dist
Requirement satisfied: pygments ; extra == 'reports'
   (installed: pygments 2.13.0)
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.j9JC5q
+ umask 022
+ cd /builddir/build/BUILD
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd snakemake-7.22.0
+ mkdir -p /builddir/build/BUILD/snakemake-7.22.0/.pyproject-builddir
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ TMPDIR=/builddir/build/BUILD/snakemake-7.22.0/.pyproject-builddir
+ /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_wheel.py /builddir/build/BUILD/snakemake-7.22.0/pyproject-wheeldir
Processing /builddir/build/BUILD/snakemake-7.22.0
  Preparing metadata (pyproject.toml): started
  Running command Preparing metadata (pyproject.toml)
  running dist_info
  creating /builddir/build/BUILD/snakemake-7.22.0/.pyproject-builddir/pip-modern-metadata-tx6jgr5h/snakemake.egg-info
  writing /builddir/build/BUILD/snakemake-7.22.0/.pyproject-builddir/pip-modern-metadata-tx6jgr5h/snakemake.egg-info/PKG-INFO
  writing dependency_links to /builddir/build/BUILD/snakemake-7.22.0/.pyproject-builddir/pip-modern-metadata-tx6jgr5h/snakemake.egg-info/dependency_links.txt
  writing entry points to /builddir/build/BUILD/snakemake-7.22.0/.pyproject-builddir/pip-modern-metadata-tx6jgr5h/snakemake.egg-info/entry_points.txt
  writing requirements to /builddir/build/BUILD/snakemake-7.22.0/.pyproject-builddir/pip-modern-metadata-tx6jgr5h/snakemake.egg-info/requires.txt
  writing top-level names to /builddir/build/BUILD/snakemake-7.22.0/.pyproject-builddir/pip-modern-metadata-tx6jgr5h/snakemake.egg-info/top_level.txt
  writing manifest file '/builddir/build/BUILD/snakemake-7.22.0/.pyproject-builddir/pip-modern-metadata-tx6jgr5h/snakemake.egg-info/SOURCES.txt'
  reading manifest file '/builddir/build/BUILD/snakemake-7.22.0/.pyproject-builddir/pip-modern-metadata-tx6jgr5h/snakemake.egg-info/SOURCES.txt'
  reading manifest template 'MANIFEST.in'
  adding license file 'LICENSE.md'
  adding license file 'AUTHORS.rst'
  writing manifest file '/builddir/build/BUILD/snakemake-7.22.0/.pyproject-builddir/pip-modern-metadata-tx6jgr5h/snakemake.egg-info/SOURCES.txt'
  creating '/builddir/build/BUILD/snakemake-7.22.0/.pyproject-builddir/pip-modern-metadata-tx6jgr5h/snakemake-7.22.0.dist-info'
  Preparing metadata (pyproject.toml): finished with status 'done'
Building wheels for collected packages: snakemake
  Building wheel for snakemake (pyproject.toml): started
  Running command Building wheel for snakemake (pyproject.toml)
  running bdist_wheel
  running build
  running build_py
  creating build
  creating build/lib
  creating build/lib/snakemake
  copying snakemake/wrapper.py -> build/lib/snakemake
  copying snakemake/workflow.py -> build/lib/snakemake
  copying snakemake/utils.py -> build/lib/snakemake
  copying snakemake/target_jobs.py -> build/lib/snakemake
  copying snakemake/stats.py -> build/lib/snakemake
  copying snakemake/sourcecache.py -> build/lib/snakemake
  copying snakemake/shell.py -> build/lib/snakemake
  copying snakemake/script.py -> build/lib/snakemake
  copying snakemake/scheduler.py -> build/lib/snakemake
  copying snakemake/rules.py -> build/lib/snakemake
  copying snakemake/ruleinfo.py -> build/lib/snakemake
  copying snakemake/resources.py -> build/lib/snakemake
  copying snakemake/persistence.py -> build/lib/snakemake
  copying snakemake/path_modifier.py -> build/lib/snakemake
  copying snakemake/parser.py -> build/lib/snakemake
  copying snakemake/output_index.py -> build/lib/snakemake
  copying snakemake/notebook.py -> build/lib/snakemake
  copying snakemake/modules.py -> build/lib/snakemake
  copying snakemake/logging.py -> build/lib/snakemake
  copying snakemake/jobs.py -> build/lib/snakemake
  copying snakemake/io.py -> build/lib/snakemake
  copying snakemake/gui.py -> build/lib/snakemake
  copying snakemake/exceptions.py -> build/lib/snakemake
  copying snakemake/decorators.py -> build/lib/snakemake
  copying snakemake/dag.py -> build/lib/snakemake
  copying snakemake/cwl.py -> build/lib/snakemake
  copying snakemake/checkpoints.py -> build/lib/snakemake
  copying snakemake/benchmark.py -> build/lib/snakemake
  copying snakemake/_version.py -> build/lib/snakemake
  copying snakemake/__main__.py -> build/lib/snakemake
  copying snakemake/__init__.py -> build/lib/snakemake
  creating build/lib/snakemake/unit_tests
  copying snakemake/unit_tests/__init__.py -> build/lib/snakemake/unit_tests
  creating build/lib/snakemake/template_rendering
  copying snakemake/template_rendering/yte.py -> build/lib/snakemake/template_rendering
  copying snakemake/template_rendering/jinja2.py -> build/lib/snakemake/template_rendering
  copying snakemake/template_rendering/__init__.py -> build/lib/snakemake/template_rendering
  creating build/lib/snakemake/report
  copying snakemake/report/rulegraph_spec.py -> build/lib/snakemake/report
  copying snakemake/report/__init__.py -> build/lib/snakemake/report
  creating build/lib/snakemake/remote
  copying snakemake/remote/zenodo.py -> build/lib/snakemake/remote
  copying snakemake/remote/webdav.py -> build/lib/snakemake/remote
  copying snakemake/remote/iRODS.py -> build/lib/snakemake/remote
  copying snakemake/remote/gridftp.py -> build/lib/snakemake/remote
  copying snakemake/remote/gfal.py -> build/lib/snakemake/remote
  copying snakemake/remote/dropbox.py -> build/lib/snakemake/remote
  copying snakemake/remote/__init__.py -> build/lib/snakemake/remote
  copying snakemake/remote/XRootD.py -> build/lib/snakemake/remote
  copying snakemake/remote/SFTP.py -> build/lib/snakemake/remote
  copying snakemake/remote/S3Mocked.py -> build/lib/snakemake/remote
  copying snakemake/remote/S3.py -> build/lib/snakemake/remote
  copying snakemake/remote/NCBI.py -> build/lib/snakemake/remote
  copying snakemake/remote/HTTP.py -> build/lib/snakemake/remote
  copying snakemake/remote/GS.py -> build/lib/snakemake/remote
  copying snakemake/remote/FTP.py -> build/lib/snakemake/remote
  copying snakemake/remote/EGA.py -> build/lib/snakemake/remote
  copying snakemake/remote/AzBlob.py -> build/lib/snakemake/remote
  creating build/lib/snakemake/linting
  copying snakemake/linting/snakefiles.py -> build/lib/snakemake/linting
  copying snakemake/linting/rules.py -> build/lib/snakemake/linting
  copying snakemake/linting/links.py -> build/lib/snakemake/linting
  copying snakemake/linting/__init__.py -> build/lib/snakemake/linting
  creating build/lib/snakemake/executors
  copying snakemake/executors/google_lifesciences_helper.py -> build/lib/snakemake/executors
  copying snakemake/executors/google_lifesciences.py -> build/lib/snakemake/executors
  copying snakemake/executors/ga4gh_tes.py -> build/lib/snakemake/executors
  copying snakemake/executors/flux.py -> build/lib/snakemake/executors
  copying snakemake/executors/common.py -> build/lib/snakemake/executors
  copying snakemake/executors/__init__.py -> build/lib/snakemake/executors
  creating build/lib/snakemake/deployment
  copying snakemake/deployment/singularity.py -> build/lib/snakemake/deployment
  copying snakemake/deployment/env_modules.py -> build/lib/snakemake/deployment
  copying snakemake/deployment/containerize.py -> build/lib/snakemake/deployment
  copying snakemake/deployment/conda.py -> build/lib/snakemake/deployment
  copying snakemake/deployment/__init__.py -> build/lib/snakemake/deployment
  creating build/lib/snakemake/common
  copying snakemake/common/tbdstring.py -> build/lib/snakemake/common
  copying snakemake/common/__init__.py -> build/lib/snakemake/common
  creating build/lib/snakemake/caching
  copying snakemake/caching/remote.py -> build/lib/snakemake/caching
  copying snakemake/caching/local.py -> build/lib/snakemake/caching
  copying snakemake/caching/hash.py -> build/lib/snakemake/caching
  copying snakemake/caching/__init__.py -> build/lib/snakemake/caching
  creating build/lib/snakemake/unit_tests/templates
  copying snakemake/unit_tests/templates/__init__.py -> build/lib/snakemake/unit_tests/templates
  creating build/lib/snakemake/report/template
  copying snakemake/report/template/__init__.py -> build/lib/snakemake/report/template
  creating build/lib/snakemake/report/data
  copying snakemake/report/data/timeline.py -> build/lib/snakemake/report/data
  copying snakemake/report/data/runtimes.py -> build/lib/snakemake/report/data
  copying snakemake/report/data/rules.py -> build/lib/snakemake/report/data
  copying snakemake/report/data/rulegraph.py -> build/lib/snakemake/report/data
  copying snakemake/report/data/results.py -> build/lib/snakemake/report/data
  copying snakemake/report/data/packages.py -> build/lib/snakemake/report/data
  copying snakemake/report/data/common.py -> build/lib/snakemake/report/data
  copying snakemake/report/data/categories.py -> build/lib/snakemake/report/data
  copying snakemake/report/data/__init__.py -> build/lib/snakemake/report/data
  creating build/lib/snakemake/report/template/components
  copying snakemake/report/template/components/__init__.py -> build/lib/snakemake/report/template/components
  creating build/lib/snakemake/executors/slurm
  copying snakemake/executors/slurm/slurm_submit.py -> build/lib/snakemake/executors/slurm
  copying snakemake/executors/slurm/slurm_jobstep.py -> build/lib/snakemake/executors/slurm
  copying snakemake/executors/slurm/__init__.py -> build/lib/snakemake/executors/slurm
  copying snakemake/report.css -> build/lib/snakemake
  copying snakemake/gui.html -> build/lib/snakemake
  copying snakemake/executors/jobscript.sh -> build/lib/snakemake/executors
  copying snakemake/unit_tests/templates/ruletest.py.jinja2 -> build/lib/snakemake/unit_tests/templates
  copying snakemake/unit_tests/templates/common.py.jinja2 -> build/lib/snakemake/unit_tests/templates
  copying snakemake/report/template/style.css -> build/lib/snakemake/report/template
  copying snakemake/report/template/index.html.jinja2 -> build/lib/snakemake/report/template
  copying snakemake/report/template/logo.svg -> build/lib/snakemake/report/template
  copying snakemake/report/template/components/subcategory.js -> build/lib/snakemake/report/template/components
  copying snakemake/report/template/components/stats.js -> build/lib/snakemake/report/template/components
  copying snakemake/report/template/components/search_results.js -> build/lib/snakemake/report/template/components
  copying snakemake/report/template/components/rule_info.js -> build/lib/snakemake/report/template/components
  copying snakemake/report/template/components/rule_graph.js -> build/lib/snakemake/report/template/components
  copying snakemake/report/template/components/result_view_button.js -> build/lib/snakemake/report/template/components
  copying snakemake/report/template/components/result_info.js -> build/lib/snakemake/report/template/components
  copying snakemake/report/template/components/report_info.js -> build/lib/snakemake/report/template/components
  copying snakemake/report/template/components/navbar.js -> build/lib/snakemake/report/template/components
  copying snakemake/report/template/components/menu.js -> build/lib/snakemake/report/template/components
  copying snakemake/report/template/components/list_item.js -> build/lib/snakemake/report/template/components
  copying snakemake/report/template/components/list_heading.js -> build/lib/snakemake/report/template/components
  copying snakemake/report/template/components/icon.js -> build/lib/snakemake/report/template/components
  copying snakemake/report/template/components/content.js -> build/lib/snakemake/report/template/components
  copying snakemake/report/template/components/common.js -> build/lib/snakemake/report/template/components
  copying snakemake/report/template/components/category.js -> build/lib/snakemake/report/template/components
  copying snakemake/report/template/components/button.js -> build/lib/snakemake/report/template/components
  copying snakemake/report/template/components/breadcrumbs.js -> build/lib/snakemake/report/template/components
  copying snakemake/report/template/components/app.js -> build/lib/snakemake/report/template/components
  copying snakemake/report/template/components/abstract_results.js -> build/lib/snakemake/report/template/components
  copying snakemake/report/template/components/abstract_menu.js -> build/lib/snakemake/report/template/components
  UPDATING build/lib/snakemake/_version.py
  set build/lib/snakemake/_version.py to '7.22.0'
  installing to build/bdist.linux-x86_64/wheel
  running install
  running install_lib
  creating build/bdist.linux-x86_64
  creating build/bdist.linux-x86_64/wheel
  creating build/bdist.linux-x86_64/wheel/snakemake
  copying build/lib/snakemake/_version.py -> build/bdist.linux-x86_64/wheel/snakemake
  copying build/lib/snakemake/gui.html -> build/bdist.linux-x86_64/wheel/snakemake
  copying build/lib/snakemake/report.css -> build/bdist.linux-x86_64/wheel/snakemake
  creating build/bdist.linux-x86_64/wheel/snakemake/caching
  copying build/lib/snakemake/caching/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/caching
  copying build/lib/snakemake/caching/hash.py -> build/bdist.linux-x86_64/wheel/snakemake/caching
  copying build/lib/snakemake/caching/local.py -> build/bdist.linux-x86_64/wheel/snakemake/caching
  copying build/lib/snakemake/caching/remote.py -> build/bdist.linux-x86_64/wheel/snakemake/caching
  creating build/bdist.linux-x86_64/wheel/snakemake/common
  copying build/lib/snakemake/common/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/common
  copying build/lib/snakemake/common/tbdstring.py -> build/bdist.linux-x86_64/wheel/snakemake/common
  creating build/bdist.linux-x86_64/wheel/snakemake/deployment
  copying build/lib/snakemake/deployment/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/deployment
  copying build/lib/snakemake/deployment/conda.py -> build/bdist.linux-x86_64/wheel/snakemake/deployment
  copying build/lib/snakemake/deployment/containerize.py -> build/bdist.linux-x86_64/wheel/snakemake/deployment
  copying build/lib/snakemake/deployment/env_modules.py -> build/bdist.linux-x86_64/wheel/snakemake/deployment
  copying build/lib/snakemake/deployment/singularity.py -> build/bdist.linux-x86_64/wheel/snakemake/deployment
  creating build/bdist.linux-x86_64/wheel/snakemake/executors
  copying build/lib/snakemake/executors/jobscript.sh -> build/bdist.linux-x86_64/wheel/snakemake/executors
  creating build/bdist.linux-x86_64/wheel/snakemake/executors/slurm
  copying build/lib/snakemake/executors/slurm/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/executors/slurm
  copying build/lib/snakemake/executors/slurm/slurm_jobstep.py -> build/bdist.linux-x86_64/wheel/snakemake/executors/slurm
  copying build/lib/snakemake/executors/slurm/slurm_submit.py -> build/bdist.linux-x86_64/wheel/snakemake/executors/slurm
  copying build/lib/snakemake/executors/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/executors
  copying build/lib/snakemake/executors/common.py -> build/bdist.linux-x86_64/wheel/snakemake/executors
  copying build/lib/snakemake/executors/flux.py -> build/bdist.linux-x86_64/wheel/snakemake/executors
  copying build/lib/snakemake/executors/ga4gh_tes.py -> build/bdist.linux-x86_64/wheel/snakemake/executors
  copying build/lib/snakemake/executors/google_lifesciences.py -> build/bdist.linux-x86_64/wheel/snakemake/executors
  copying build/lib/snakemake/executors/google_lifesciences_helper.py -> build/bdist.linux-x86_64/wheel/snakemake/executors
  creating build/bdist.linux-x86_64/wheel/snakemake/linting
  copying build/lib/snakemake/linting/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/linting
  copying build/lib/snakemake/linting/links.py -> build/bdist.linux-x86_64/wheel/snakemake/linting
  copying build/lib/snakemake/linting/rules.py -> build/bdist.linux-x86_64/wheel/snakemake/linting
  copying build/lib/snakemake/linting/snakefiles.py -> build/bdist.linux-x86_64/wheel/snakemake/linting
  creating build/bdist.linux-x86_64/wheel/snakemake/remote
  copying build/lib/snakemake/remote/AzBlob.py -> build/bdist.linux-x86_64/wheel/snakemake/remote
  copying build/lib/snakemake/remote/EGA.py -> build/bdist.linux-x86_64/wheel/snakemake/remote
  copying build/lib/snakemake/remote/FTP.py -> build/bdist.linux-x86_64/wheel/snakemake/remote
  copying build/lib/snakemake/remote/GS.py -> build/bdist.linux-x86_64/wheel/snakemake/remote
  copying build/lib/snakemake/remote/HTTP.py -> build/bdist.linux-x86_64/wheel/snakemake/remote
  copying build/lib/snakemake/remote/NCBI.py -> build/bdist.linux-x86_64/wheel/snakemake/remote
  copying build/lib/snakemake/remote/S3.py -> build/bdist.linux-x86_64/wheel/snakemake/remote
  copying build/lib/snakemake/remote/S3Mocked.py -> build/bdist.linux-x86_64/wheel/snakemake/remote
  copying build/lib/snakemake/remote/SFTP.py -> build/bdist.linux-x86_64/wheel/snakemake/remote
  copying build/lib/snakemake/remote/XRootD.py -> build/bdist.linux-x86_64/wheel/snakemake/remote
  copying build/lib/snakemake/remote/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/remote
  copying build/lib/snakemake/remote/dropbox.py -> build/bdist.linux-x86_64/wheel/snakemake/remote
  copying build/lib/snakemake/remote/gfal.py -> build/bdist.linux-x86_64/wheel/snakemake/remote
  copying build/lib/snakemake/remote/gridftp.py -> build/bdist.linux-x86_64/wheel/snakemake/remote
  copying build/lib/snakemake/remote/iRODS.py -> build/bdist.linux-x86_64/wheel/snakemake/remote
  copying build/lib/snakemake/remote/webdav.py -> build/bdist.linux-x86_64/wheel/snakemake/remote
  copying build/lib/snakemake/remote/zenodo.py -> build/bdist.linux-x86_64/wheel/snakemake/remote
  creating build/bdist.linux-x86_64/wheel/snakemake/report
  creating build/bdist.linux-x86_64/wheel/snakemake/report/data
  copying build/lib/snakemake/report/data/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/report/data
  copying build/lib/snakemake/report/data/categories.py -> build/bdist.linux-x86_64/wheel/snakemake/report/data
  copying build/lib/snakemake/report/data/common.py -> build/bdist.linux-x86_64/wheel/snakemake/report/data
  copying build/lib/snakemake/report/data/packages.py -> build/bdist.linux-x86_64/wheel/snakemake/report/data
  copying build/lib/snakemake/report/data/results.py -> build/bdist.linux-x86_64/wheel/snakemake/report/data
  copying build/lib/snakemake/report/data/rulegraph.py -> build/bdist.linux-x86_64/wheel/snakemake/report/data
  copying build/lib/snakemake/report/data/rules.py -> build/bdist.linux-x86_64/wheel/snakemake/report/data
  copying build/lib/snakemake/report/data/runtimes.py -> build/bdist.linux-x86_64/wheel/snakemake/report/data
  copying build/lib/snakemake/report/data/timeline.py -> build/bdist.linux-x86_64/wheel/snakemake/report/data
  creating build/bdist.linux-x86_64/wheel/snakemake/report/template
  copying build/lib/snakemake/report/template/logo.svg -> build/bdist.linux-x86_64/wheel/snakemake/report/template
  copying build/lib/snakemake/report/template/index.html.jinja2 -> build/bdist.linux-x86_64/wheel/snakemake/report/template
  copying build/lib/snakemake/report/template/style.css -> build/bdist.linux-x86_64/wheel/snakemake/report/template
  creating build/bdist.linux-x86_64/wheel/snakemake/report/template/components
  copying build/lib/snakemake/report/template/components/abstract_menu.js -> build/bdist.linux-x86_64/wheel/snakemake/report/template/components
  copying build/lib/snakemake/report/template/components/abstract_results.js -> build/bdist.linux-x86_64/wheel/snakemake/report/template/components
  copying build/lib/snakemake/report/template/components/app.js -> build/bdist.linux-x86_64/wheel/snakemake/report/template/components
  copying build/lib/snakemake/report/template/components/breadcrumbs.js -> build/bdist.linux-x86_64/wheel/snakemake/report/template/components
  copying build/lib/snakemake/report/template/components/button.js -> build/bdist.linux-x86_64/wheel/snakemake/report/template/components
  copying build/lib/snakemake/report/template/components/category.js -> build/bdist.linux-x86_64/wheel/snakemake/report/template/components
  copying build/lib/snakemake/report/template/components/common.js -> build/bdist.linux-x86_64/wheel/snakemake/report/template/components
  copying build/lib/snakemake/report/template/components/content.js -> build/bdist.linux-x86_64/wheel/snakemake/report/template/components
  copying build/lib/snakemake/report/template/components/icon.js -> build/bdist.linux-x86_64/wheel/snakemake/report/template/components
  copying build/lib/snakemake/report/template/components/list_heading.js -> build/bdist.linux-x86_64/wheel/snakemake/report/template/components
  copying build/lib/snakemake/report/template/components/list_item.js -> build/bdist.linux-x86_64/wheel/snakemake/report/template/components
  copying build/lib/snakemake/report/template/components/menu.js -> build/bdist.linux-x86_64/wheel/snakemake/report/template/components
  copying build/lib/snakemake/report/template/components/navbar.js -> build/bdist.linux-x86_64/wheel/snakemake/report/template/components
  copying build/lib/snakemake/report/template/components/report_info.js -> build/bdist.linux-x86_64/wheel/snakemake/report/template/components
  copying build/lib/snakemake/report/template/components/result_info.js -> build/bdist.linux-x86_64/wheel/snakemake/report/template/components
  copying build/lib/snakemake/report/template/components/result_view_button.js -> build/bdist.linux-x86_64/wheel/snakemake/report/template/components
  copying build/lib/snakemake/report/template/components/rule_graph.js -> build/bdist.linux-x86_64/wheel/snakemake/report/template/components
  copying build/lib/snakemake/report/template/components/rule_info.js -> build/bdist.linux-x86_64/wheel/snakemake/report/template/components
  copying build/lib/snakemake/report/template/components/search_results.js -> build/bdist.linux-x86_64/wheel/snakemake/report/template/components
  copying build/lib/snakemake/report/template/components/stats.js -> build/bdist.linux-x86_64/wheel/snakemake/report/template/components
  copying build/lib/snakemake/report/template/components/subcategory.js -> build/bdist.linux-x86_64/wheel/snakemake/report/template/components
  copying build/lib/snakemake/report/template/components/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/report/template/components
  copying build/lib/snakemake/report/template/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/report/template
  copying build/lib/snakemake/report/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/report
  copying build/lib/snakemake/report/rulegraph_spec.py -> build/bdist.linux-x86_64/wheel/snakemake/report
  creating build/bdist.linux-x86_64/wheel/snakemake/template_rendering
  copying build/lib/snakemake/template_rendering/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/template_rendering
  copying build/lib/snakemake/template_rendering/jinja2.py -> build/bdist.linux-x86_64/wheel/snakemake/template_rendering
  copying build/lib/snakemake/template_rendering/yte.py -> build/bdist.linux-x86_64/wheel/snakemake/template_rendering
  creating build/bdist.linux-x86_64/wheel/snakemake/unit_tests
  creating build/bdist.linux-x86_64/wheel/snakemake/unit_tests/templates
  copying build/lib/snakemake/unit_tests/templates/common.py.jinja2 -> build/bdist.linux-x86_64/wheel/snakemake/unit_tests/templates
  copying build/lib/snakemake/unit_tests/templates/ruletest.py.jinja2 -> build/bdist.linux-x86_64/wheel/snakemake/unit_tests/templates
  copying build/lib/snakemake/unit_tests/templates/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/unit_tests/templates
  copying build/lib/snakemake/unit_tests/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/unit_tests
  copying build/lib/snakemake/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake
  copying build/lib/snakemake/__main__.py -> build/bdist.linux-x86_64/wheel/snakemake
  copying build/lib/snakemake/benchmark.py -> build/bdist.linux-x86_64/wheel/snakemake
  copying build/lib/snakemake/checkpoints.py -> build/bdist.linux-x86_64/wheel/snakemake
  copying build/lib/snakemake/cwl.py -> build/bdist.linux-x86_64/wheel/snakemake
  copying build/lib/snakemake/dag.py -> build/bdist.linux-x86_64/wheel/snakemake
  copying build/lib/snakemake/decorators.py -> build/bdist.linux-x86_64/wheel/snakemake
  copying build/lib/snakemake/exceptions.py -> build/bdist.linux-x86_64/wheel/snakemake
  copying build/lib/snakemake/gui.py -> build/bdist.linux-x86_64/wheel/snakemake
  copying build/lib/snakemake/io.py -> build/bdist.linux-x86_64/wheel/snakemake
  copying build/lib/snakemake/jobs.py -> build/bdist.linux-x86_64/wheel/snakemake
  copying build/lib/snakemake/logging.py -> build/bdist.linux-x86_64/wheel/snakemake
  copying build/lib/snakemake/modules.py -> build/bdist.linux-x86_64/wheel/snakemake
  copying build/lib/snakemake/notebook.py -> build/bdist.linux-x86_64/wheel/snakemake
  copying build/lib/snakemake/output_index.py -> build/bdist.linux-x86_64/wheel/snakemake
  copying build/lib/snakemake/parser.py -> build/bdist.linux-x86_64/wheel/snakemake
  copying build/lib/snakemake/path_modifier.py -> build/bdist.linux-x86_64/wheel/snakemake
  copying build/lib/snakemake/persistence.py -> build/bdist.linux-x86_64/wheel/snakemake
  copying build/lib/snakemake/resources.py -> build/bdist.linux-x86_64/wheel/snakemake
  copying build/lib/snakemake/ruleinfo.py -> build/bdist.linux-x86_64/wheel/snakemake
  copying build/lib/snakemake/rules.py -> build/bdist.linux-x86_64/wheel/snakemake
  copying build/lib/snakemake/scheduler.py -> build/bdist.linux-x86_64/wheel/snakemake
  copying build/lib/snakemake/script.py -> build/bdist.linux-x86_64/wheel/snakemake
  copying build/lib/snakemake/shell.py -> build/bdist.linux-x86_64/wheel/snakemake
  copying build/lib/snakemake/sourcecache.py -> build/bdist.linux-x86_64/wheel/snakemake
  copying build/lib/snakemake/stats.py -> build/bdist.linux-x86_64/wheel/snakemake
  copying build/lib/snakemake/target_jobs.py -> build/bdist.linux-x86_64/wheel/snakemake
  copying build/lib/snakemake/utils.py -> build/bdist.linux-x86_64/wheel/snakemake
  copying build/lib/snakemake/workflow.py -> build/bdist.linux-x86_64/wheel/snakemake
  copying build/lib/snakemake/wrapper.py -> build/bdist.linux-x86_64/wheel/snakemake
  running install_egg_info
  running egg_info
  writing snakemake.egg-info/PKG-INFO
  writing dependency_links to snakemake.egg-info/dependency_links.txt
  writing entry points to snakemake.egg-info/entry_points.txt
  writing requirements to snakemake.egg-info/requires.txt
  writing top-level names to snakemake.egg-info/top_level.txt
  reading manifest file 'snakemake.egg-info/SOURCES.txt'
  reading manifest template 'MANIFEST.in'
  adding license file 'LICENSE.md'
  adding license file 'AUTHORS.rst'
  writing manifest file 'snakemake.egg-info/SOURCES.txt'
  Copying snakemake.egg-info to build/bdist.linux-x86_64/wheel/snakemake-7.22.0-py3.11.egg-info
  running install_scripts
  creating build/bdist.linux-x86_64/wheel/snakemake-7.22.0.dist-info/WHEEL
  creating '/builddir/build/BUILD/snakemake-7.22.0/.pyproject-builddir/pip-wheel-h_ov36y2/tmpt26sb2d7/snakemake-7.22.0-py3-none-any.whl' and adding 'build/bdist.linux-x86_64/wheel' to it
  adding 'snakemake/__init__.py'
  adding 'snakemake/__main__.py'
  adding 'snakemake/_version.py'
  adding 'snakemake/benchmark.py'
  adding 'snakemake/checkpoints.py'
  adding 'snakemake/cwl.py'
  adding 'snakemake/dag.py'
  adding 'snakemake/decorators.py'
  adding 'snakemake/exceptions.py'
  adding 'snakemake/gui.html'
  adding 'snakemake/gui.py'
  adding 'snakemake/io.py'
  adding 'snakemake/jobs.py'
  adding 'snakemake/logging.py'
  adding 'snakemake/modules.py'
  adding 'snakemake/notebook.py'
  adding 'snakemake/output_index.py'
  adding 'snakemake/parser.py'
  adding 'snakemake/path_modifier.py'
  adding 'snakemake/persistence.py'
  adding 'snakemake/report.css'
  adding 'snakemake/resources.py'
  adding 'snakemake/ruleinfo.py'
  adding 'snakemake/rules.py'
  adding 'snakemake/scheduler.py'
  adding 'snakemake/script.py'
  adding 'snakemake/shell.py'
  adding 'snakemake/sourcecache.py'
  adding 'snakemake/stats.py'
  adding 'snakemake/target_jobs.py'
  adding 'snakemake/utils.py'
  adding 'snakemake/workflow.py'
  adding 'snakemake/wrapper.py'
  adding 'snakemake/caching/__init__.py'
  adding 'snakemake/caching/hash.py'
  adding 'snakemake/caching/local.py'
  adding 'snakemake/caching/remote.py'
  adding 'snakemake/common/__init__.py'
  adding 'snakemake/common/tbdstring.py'
  adding 'snakemake/deployment/__init__.py'
  adding 'snakemake/deployment/conda.py'
  adding 'snakemake/deployment/containerize.py'
  adding 'snakemake/deployment/env_modules.py'
  adding 'snakemake/deployment/singularity.py'
  adding 'snakemake/executors/__init__.py'
  adding 'snakemake/executors/common.py'
  adding 'snakemake/executors/flux.py'
  adding 'snakemake/executors/ga4gh_tes.py'
  adding 'snakemake/executors/google_lifesciences.py'
  adding 'snakemake/executors/google_lifesciences_helper.py'
  adding 'snakemake/executors/jobscript.sh'
  adding 'snakemake/executors/slurm/__init__.py'
  adding 'snakemake/executors/slurm/slurm_jobstep.py'
  adding 'snakemake/executors/slurm/slurm_submit.py'
  adding 'snakemake/linting/__init__.py'
  adding 'snakemake/linting/links.py'
  adding 'snakemake/linting/rules.py'
  adding 'snakemake/linting/snakefiles.py'
  adding 'snakemake/remote/AzBlob.py'
  adding 'snakemake/remote/EGA.py'
  adding 'snakemake/remote/FTP.py'
  adding 'snakemake/remote/GS.py'
  adding 'snakemake/remote/HTTP.py'
  adding 'snakemake/remote/NCBI.py'
  adding 'snakemake/remote/S3.py'
  adding 'snakemake/remote/S3Mocked.py'
  adding 'snakemake/remote/SFTP.py'
  adding 'snakemake/remote/XRootD.py'
  adding 'snakemake/remote/__init__.py'
  adding 'snakemake/remote/dropbox.py'
  adding 'snakemake/remote/gfal.py'
  adding 'snakemake/remote/gridftp.py'
  adding 'snakemake/remote/iRODS.py'
  adding 'snakemake/remote/webdav.py'
  adding 'snakemake/remote/zenodo.py'
  adding 'snakemake/report/__init__.py'
  adding 'snakemake/report/rulegraph_spec.py'
  adding 'snakemake/report/data/__init__.py'
  adding 'snakemake/report/data/categories.py'
  adding 'snakemake/report/data/common.py'
  adding 'snakemake/report/data/packages.py'
  adding 'snakemake/report/data/results.py'
  adding 'snakemake/report/data/rulegraph.py'
  adding 'snakemake/report/data/rules.py'
  adding 'snakemake/report/data/runtimes.py'
  adding 'snakemake/report/data/timeline.py'
  adding 'snakemake/report/template/__init__.py'
  adding 'snakemake/report/template/index.html.jinja2'
  adding 'snakemake/report/template/logo.svg'
  adding 'snakemake/report/template/style.css'
  adding 'snakemake/report/template/components/__init__.py'
  adding 'snakemake/report/template/components/abstract_menu.js'
  adding 'snakemake/report/template/components/abstract_results.js'
  adding 'snakemake/report/template/components/app.js'
  adding 'snakemake/report/template/components/breadcrumbs.js'
  adding 'snakemake/report/template/components/button.js'
  adding 'snakemake/report/template/components/category.js'
  adding 'snakemake/report/template/components/common.js'
  adding 'snakemake/report/template/components/content.js'
  adding 'snakemake/report/template/components/icon.js'
  adding 'snakemake/report/template/components/list_heading.js'
  adding 'snakemake/report/template/components/list_item.js'
  adding 'snakemake/report/template/components/menu.js'
  adding 'snakemake/report/template/components/navbar.js'
  adding 'snakemake/report/template/components/report_info.js'
  adding 'snakemake/report/template/components/result_info.js'
  adding 'snakemake/report/template/components/result_view_button.js'
  adding 'snakemake/report/template/components/rule_graph.js'
  adding 'snakemake/report/template/components/rule_info.js'
  adding 'snakemake/report/template/components/search_results.js'
  adding 'snakemake/report/template/components/stats.js'
  adding 'snakemake/report/template/components/subcategory.js'
  adding 'snakemake/template_rendering/__init__.py'
  adding 'snakemake/template_rendering/jinja2.py'
  adding 'snakemake/template_rendering/yte.py'
  adding 'snakemake/unit_tests/__init__.py'
  adding 'snakemake/unit_tests/templates/__init__.py'
  adding 'snakemake/unit_tests/templates/common.py.jinja2'
  adding 'snakemake/unit_tests/templates/ruletest.py.jinja2'
  adding 'snakemake-7.22.0.dist-info/AUTHORS.rst'
  adding 'snakemake-7.22.0.dist-info/LICENSE.md'
  adding 'snakemake-7.22.0.dist-info/METADATA'
  adding 'snakemake-7.22.0.dist-info/WHEEL'
  adding 'snakemake-7.22.0.dist-info/entry_points.txt'
  adding 'snakemake-7.22.0.dist-info/top_level.txt'
  adding 'snakemake-7.22.0.dist-info/RECORD'
  removing build/bdist.linux-x86_64/wheel
  Building wheel for snakemake (pyproject.toml): finished with status 'done'
  Created wheel for snakemake: filename=snakemake-7.22.0-py3-none-any.whl size=362679 sha256=5e6e95689d8c5544d3e26c37e2dc46c518a0e8ed718bb3e42559c8a8a07211e1
  Stored in directory: /builddir/.cache/pip/wheels/b8/7f/17/06ed84a008001577e11de2367b0009ed349d3b63dbb793cd21
Successfully built snakemake
+ read -r fn
+ find docs -type f -name '*.svg'
++ dirname docs/executor_tutorial/workflow/quals.svg
++ basename docs/executor_tutorial/workflow/quals.svg .svg
+ rsvg-convert --format=pdf --output=docs/executor_tutorial/workflow/quals.pdf docs/executor_tutorial/workflow/quals.svg
+ read -r fn
+ find docs/executor_tutorial -type f -exec gawk '/\.svg/ { print FILENAME; nextfile }' '{}' +
+ xargs -r -t sed -r -i 's/(image::.*)\.svg/\1\.pdf/'
sed -r -i 's/(image::.*)\.svg/\1\.pdf/' docs/executor_tutorial/google_lifesciences.rst
+ PYTHONPATH=/builddir/build/BUILD/snakemake-7.22.0
+ /usr/bin/make -O -j2 V=1 VERBOSE=1 -C docs latexpdf SPHINXOPTS=-j2
make: Entering directory '/builddir/build/BUILD/snakemake-7.22.0/docs'
sphinx-build -b latex -d _build/doctrees  -j2 . _build/latex
Running Sphinx v5.3.0
making output directory... done
myst v0.18.1: MdParserConfig(commonmark_only=False, gfm_only=False, enable_extensions=[], disable_syntax=[], all_links_external=False, url_schemes=('http', 'https', 'mailto', 'ftp'), ref_domains=None, highlight_code_blocks=True, number_code_blocks=[], title_to_header=False, heading_anchors=None, heading_slug_func=None, footnote_transition=True, words_per_minute=200, sub_delimiters=('{', '}'), linkify_fuzzy_links=True, dmath_allow_labels=True, dmath_allow_space=True, dmath_allow_digits=True, dmath_double_inline=False, update_mathjax=True, mathjax_classes='tex2jax_process|mathjax_process|math|output_area')
building [mo]: targets for 0 po files that are out of date
building [latex]: all documents
updating environment: [new config] 37 added, 0 changed, 0 removed
reading sources... [ 33%] executing/caching .. index
reading sources... [ 66%] project_info/authors .. snakefiles/remote_files
reading sources... [100%] snakefiles/reporting .. tutorial/tutorial
looking for now-outdated files... none found
pickling environment... done
checking consistency... done
processing Snakemake.tex... index getting_started/installation tutorial/tutorial tutorial/setup tutorial/basics tutorial/advanced tutorial/additional_features tutorial/short executor_tutorial/tutorial executor_tutorial/google_lifesciences executor_tutorial/azure_aks executor_tutorial/flux snakefiles/best_practices executing/cli executing/cluster executing/cloud executing/grouping executing/caching executing/interoperability executing/monitoring snakefiles/writing_snakefiles snakefiles/rules snakefiles/configuration snakefiles/modularization snakefiles/remote_files snakefiles/utils snakefiles/deployment snakefiles/reporting snakefiles/testing snakefiles/foreign_wms project_info/citations project_info/more_resources project_info/faq project_info/contributing project_info/authors project_info/history project_info/license 
resolving references...
done
writing... done
copying images... [ 16%] tutorial/workflow/dag_index.png
copying images... [ 33%] tutorial/workflow/dag_call.png
copying images... [ 50%] executor_tutorial/workflow/upload-google-storage.png
copying images... [ 66%] executor_tutorial/workflow/quals.pdf
copying images... [ 83%] executor_tutorial/workflow/results-google-storage.png
copying images... [100%] project_info/img/idea.png
copying TeX support files... copying TeX support files...
done
build succeeded, 438 warnings.
The LaTeX files are in _build/latex.
Run 'make' in that directory to run these through (pdf)latex
(use `make latexpdf' here to do that automatically).
Running LaTeX files through pdflatex...
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--------------
Executing on SLURM clusters
--------------
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/builddir/build/BUILD/snakemake-7.22.0/docs/executor_tutorial/azure_aks.rst:184: ERROR: Unexpected indentation.
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How can I avoid system /tmp to be used when combining singularity and conda?
------------------------------------------------------
/builddir/build/BUILD/snakemake-7.22.0/docs/project_info/faq.rst:688: WARNING: Title underline too short.
How can I avoid system /tmp to be used when combining singularity and conda?
------------------------------------------------------
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Chapter 1.
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Chapter 2.
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Chapter 3.
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Chapter 4.
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\TU/FreeSerif(0)/m/n/10 Using the Google Life Sciences executor with Snakemake 
requires the environment variable
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[]\TU/FreeSerif(0)/m/n/10 There is a lot going on here, so let’s unpack it: thi
s creates an [][]auto-scaling Kubernetes cluster[][]
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[]\TU/FreeSerif(0)/m/n/10 Target particular jobs by RULE:WILDCARD1=VALUE,WILDCA
RD2=VALUE,…
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[]\TU/FreeSerif(0)/m/n/10 Additional tibanna config e.g. –tibanna-config spot_i
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\TU/FreeSerif(0)/m/n/10 Snakemake tracks the code that was used to create your 
files. In combination with [][]\TU/FreeMono(0)/m/n/10 summary \TU/FreeSerif(0)/
m/n/10 or
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NCBI.RemoteProvider().search()\TU/FreeSerif(0)/m/n/10 , Snakemake and \TU/FreeM
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he \TU/FreeMono(0)/m/n/10 Re-
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(see the transcript file for additional information)
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Chapter 1.
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Chapter 2.
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Chapter 3.
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Chapter 4.
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\TU/FreeSerif(0)/m/n/10 Using the Google Life Sciences executor with Snakemake 
requires the environment variable
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[]\TU/FreeSerif(0)/m/n/10 There is a lot going on here, so let’s unpack it: thi
s creates an [][]auto-scaling Kubernetes cluster[][]
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[]\TU/FreeSerif(0)/m/n/10 Target particular jobs by RULE:WILDCARD1=VALUE,WILDCA
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[]\TU/FreeSerif(0)/m/n/10 Additional tibanna config e.g. –tibanna-config spot_i
nstance=true sub-
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\TU/FreeSerif(0)/m/n/10 Snakemake tracks the code that was used to create your 
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[]\TU/FreeSerif(0)/m/n/10 When used in conjunction with \TU/FreeMono(0)/m/n/10 
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ono(0)/m/n/10 NCBI.
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\TU/FreeSerif(0)/m/n/10 If you need to access a deposition with restricted acce
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n order to avoid race conditions in
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0 drmaa\TU/FreeSerif(0)/m/n/10 ), you can now use
[260] [261] [262] (./Snakemake.ind) [263] (./Snakemake.aux) )
(see the transcript file for additional information)
Output written on Snakemake.pdf (267 pages).
Transcript written on Snakemake.log.
Latexmk: Getting log file 'Snakemake.log'
Latexmk: Examining 'Snakemake.fls'
Latexmk: Examining 'Snakemake.log'
Latexmk: Index file 'Snakemake.idx' was written
Latexmk: Log file says output to 'Snakemake.pdf'
Latexmk: Summary of warnings from last run of *latex:
  =====Latex reported missing or unavailable character(s).
=====See log file for details.
Latexmk: All targets () are up-to-date
make[1]: Leaving directory '/builddir/build/BUILD/snakemake-7.22.0/docs/_build/latex'
make: Entering directory '/builddir/build/BUILD/snakemake-7.22.0/docs'
pdflatex finished; the PDF files are in _build/latex.
make: Leaving directory '/builddir/build/BUILD/snakemake-7.22.0/docs'
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.FhcFvo
kpathsea: Running mktexfmt xelatex.fmt
mktexfmt: mktexfmt is using the following fmtutil.cnf files (in precedence order):
mktexfmt:   /usr/share/texlive/texmf-dist/web2c/fmtutil.cnf
mktexfmt: mktexfmt is using the following fmtutil.cnf file for writing changes:
mktexfmt:   /builddir/.texlive2022/texmf-config/web2c/fmtutil.cnf
mktexfmt [INFO]: writing formats under /builddir/.texlive2022/texmf-var/web2c
mktexfmt [INFO]: --- remaking xelatex with xetex
mktexfmt: running `xetex -ini   -jobname=xelatex -progname=xelatex -etex xelatex.ini' ...
This is XeTeX, Version 3.141592653-2.6-0.999994 (TeX Live 2022) (INITEX)
 restricted \write18 enabled.
entering extended mode
(/usr/share/texlive/texmf-dist/tex/generic/tex-ini-files/xelatex.ini
(/usr/share/texlive/texmf-dist/tex/latex/base/latex.ltx
(/usr/share/texlive/texmf-dist/tex/latex/base/texsys.cfg)
./texsys.aux found
\@currdir set to: ./.
Assuming \openin and \input 
have the same search path.
Defining UNIX/DOS style filename parser.
catcodes, registers, parameters,
LaTeX2e <2022-06-01> patch level 5
(/usr/share/texlive/texmf-dist/tex/latex/l3kernel/expl3.ltx
(/usr/share/texlive/texmf-dist/tex/latex/l3kernel/expl3-code.tex)) hacks,
document commands, control, par, spacing, files, font encodings, lengths,
====================================
Local config file fonttext.cfg used
====================================
(/usr/share/texlive/texmf-dist/tex/latex/base/fonttext.cfg
(/usr/share/texlive/texmf-dist/tex/latex/base/fonttext.ltx
=== Don't modify this file, use a .cfg file instead ===
(/usr/share/texlive/texmf-dist/tex/latex/base/omlenc.def)
(/usr/share/texlive/texmf-dist/tex/latex/base/omsenc.def)
(/usr/share/texlive/texmf-dist/tex/latex/base/ot1enc.def)
(/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.def)
(/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.def)
(/usr/share/texlive/texmf-dist/tex/latex/base/tuenc.def)
(/usr/share/texlive/texmf-dist/tex/latex/base/tulmr.fd)
(/usr/share/texlive/texmf-dist/tex/latex/base/tulmss.fd)
(/usr/share/texlive/texmf-dist/tex/latex/base/tulmtt.fd)
(/usr/share/texlive/texmf-dist/tex/latex/lm/ts1lmr.fd)
(/usr/share/texlive/texmf-dist/tex/latex/base/t1cmr.fd)
(/usr/share/texlive/texmf-dist/tex/latex/base/ot1cmr.fd)
(/usr/share/texlive/texmf-dist/tex/latex/base/ot1cmss.fd)
(/usr/share/texlive/texmf-dist/tex/latex/base/ot1cmtt.fd)))
====================================
Local config file fontmath.cfg used
====================================
(/usr/share/texlive/texmf-dist/tex/latex/base/fontmath.cfg
(/usr/share/texlive/texmf-dist/tex/latex/base/fontmath.ltx
=== Don't modify this file, use a .cfg file instead ===
(/usr/share/texlive/texmf-dist/tex/latex/base/omlcmm.fd)
(/usr/share/texlive/texmf-dist/tex/latex/base/omscmsy.fd)
(/usr/share/texlive/texmf-dist/tex/latex/base/omxcmex.fd)
(/usr/share/texlive/texmf-dist/tex/latex/base/ucmr.fd)))
====================================
Local config file preload.cfg used
=====================================
(/usr/share/texlive/texmf-dist/tex/latex/base/preload.cfg
(/usr/share/texlive/texmf-dist/tex/latex/base/preload.ltx)) page nos., x-ref,
environments, center, verbatim, math definitions, boxes, title, sectioning,
contents, floats, footnotes, index, bibliography, output,
 Unicode character data,
(/usr/share/texlive/texmf-dist/tex/generic/unicode-data/load-unicode-data.tex
load-unicode-data.tex v1.16 (2022-09-17)
Reading Unicode data
# UnicodeData-15.0.0.txt
# Modified 2022-09-17 11:45:00 GMT [JAW]
)
===========================================
Local configuration file hyphen.cfg used
===========================================
(/usr/share/texlive/texmf-dist/tex/generic/babel/hyphen.cfg
(/usr/share/texlive/texmf-dist/tex/generic/babel/xebabel.def)
(/usr/share/texlive/texmf-dist/tex/generic/hyphen/hyphen.tex)
(/usr/share/texlive/texmf-dist/tex/generic/hyphen/dumyhyph.tex)
(/usr/share/texlive/texmf-dist/tex/generic/hyphen/zerohyph.tex))
(/usr/share/texlive/texmf-dist/tex/latex/firstaid/latex2e-first-aid-for-externa
l-files.ltx)
 ) )
Beginning to dump on file xelatex.fmt
 (preloaded format=xelatex 2023.2.16)
86686 strings of total length 397204
1841265 memory locations dumped; current usage is 302&338175
20052 multiletter control sequences
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512280 words of font info for 32 preloaded fonts
14 hyphenation exceptions
Hyphenation trie of length 6082 has 183 ops out of 35111
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No pages of output.
Transcript written on xelatex.log.
mktexfmt [INFO]: log file copied to: /builddir/.texlive2022/texmf-var/web2c/xetex/xelatex.log
mktexfmt [INFO]: /builddir/.texlive2022/texmf-var/web2c/xetex/xelatex.fmt installed.
mktexfmt [INFO]: successfully rebuilt formats: 1
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mktexfmt [INFO]: total formats: 20
mktexfmt [INFO]: 
*************************************************************
*                                                           *
* WARNING: you are switching to fmtutil's per-user formats. *
*         Please read the following warnings!               *
*                                                           *
*************************************************************
You have run fmtutil-user (as opposed to fmtutil-sys) for the first time;
this has created format files which are local to your personal account.
From now on, any changes in system formats will *not* be automatically
reflected in your files; furthermore, running fmtutil-sys will no longer
have any effect for you.
As a consequence, you yourself have to rerun fmtutil-user after any
change in the system directories. For example, when one of the LaTeX or
other format source files changes, which happens frequently.
See https://tug.org/texlive/scripts-sys-user.html for details.
If you want to undo this, remove the files mentioned above.
Run mktexfmt --help for full documentation of fmtutil.
mktexfmt [INFO]: exiting with status 0
Latexmk: Missing input file 'Snakemake.toc' (or dependence on it) from following:
  No file Snakemake.toc.
Latexmk: Missing input file 'Snakemake.ind' (or dependence on it) from following:
  No file Snakemake.ind.
Latexmk: ====List of undefined refs and citations:
  Missing character: There is no âš  (U+26A0) in font [FreeSansBold.otf]/OT:script=latn;language=dflt;!
+ RPM_EC=0
++ jobs -p
+ exit 0
+ umask 022
+ cd /builddir/build/BUILD
+ '[' /builddir/build/BUILDROOT/snakemake-7.22.0-1.fc39.x86_64 '!=' / ']'
+ rm -rf /builddir/build/BUILDROOT/snakemake-7.22.0-1.fc39.x86_64
++ dirname /builddir/build/BUILDROOT/snakemake-7.22.0-1.fc39.x86_64
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir /builddir/build/BUILDROOT/snakemake-7.22.0-1.fc39.x86_64
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd snakemake-7.22.0
++ xargs basename --multiple
++ ls /builddir/build/BUILD/snakemake-7.22.0/pyproject-wheeldir/snakemake-7.22.0-py3-none-any.whl
++ sed -E 's/([^-]+)-([^-]+)-.+\.whl/\1==\2/'
+ specifier=snakemake==7.22.0
+ TMPDIR=/builddir/build/BUILD/snakemake-7.22.0/.pyproject-builddir
+ /usr/bin/python3 -m pip install --root /builddir/build/BUILDROOT/snakemake-7.22.0-1.fc39.x86_64 --prefix /usr --no-deps --disable-pip-version-check --progress-bar off --verbose --ignore-installed --no-warn-script-location --no-index --no-cache-dir --find-links /builddir/build/BUILD/snakemake-7.22.0/pyproject-wheeldir snakemake==7.22.0
Using pip 23.0 from /usr/lib/python3.11/site-packages/pip (python 3.11)
Looking in links: /builddir/build/BUILD/snakemake-7.22.0/pyproject-wheeldir
Processing ./pyproject-wheeldir/snakemake-7.22.0-py3-none-any.whl
Installing collected packages: snakemake
  Creating /builddir/build/BUILDROOT/snakemake-7.22.0-1.fc39.x86_64/usr/bin
  changing mode of /builddir/build/BUILDROOT/snakemake-7.22.0-1.fc39.x86_64/usr/bin/snakemake to 755
  changing mode of /builddir/build/BUILDROOT/snakemake-7.22.0-1.fc39.x86_64/usr/bin/snakemake-bash-completion to 755
Successfully installed snakemake-7.22.0
+ '[' -d /builddir/build/BUILDROOT/snakemake-7.22.0-1.fc39.x86_64/usr/bin ']'
+ '[' -z sP ']'
+ shebang_flags=-kasP
+ /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP /builddir/build/BUILDROOT/snakemake-7.22.0-1.fc39.x86_64/usr/bin/snakemake /builddir/build/BUILDROOT/snakemake-7.22.0-1.fc39.x86_64/usr/bin/snakemake-bash-completion
/builddir/build/BUILDROOT/snakemake-7.22.0-1.fc39.x86_64/usr/bin/snakemake: updating
/builddir/build/BUILDROOT/snakemake-7.22.0-1.fc39.x86_64/usr/bin/snakemake-bash-completion: updating
+ rm -rfv /builddir/build/BUILDROOT/snakemake-7.22.0-1.fc39.x86_64/usr/bin/__pycache__
+ rm -f /builddir/build/BUILD/snakemake-7.22.0-1.fc39.x86_64-pyproject-ghost-distinfo
+ site_dirs=()
+ '[' -d /builddir/build/BUILDROOT/snakemake-7.22.0-1.fc39.x86_64/usr/lib/python3.11/site-packages ']'
+ site_dirs+=("/usr/lib/python3.11/site-packages")
+ '[' /builddir/build/BUILDROOT/snakemake-7.22.0-1.fc39.x86_64/usr/lib64/python3.11/site-packages '!=' /builddir/build/BUILDROOT/snakemake-7.22.0-1.fc39.x86_64/usr/lib/python3.11/site-packages ']'
+ '[' -d /builddir/build/BUILDROOT/snakemake-7.22.0-1.fc39.x86_64/usr/lib64/python3.11/site-packages ']'
+ for site_dir in ${site_dirs[@]}
+ for distinfo in /builddir/build/BUILDROOT/snakemake-7.22.0-1.fc39.x86_64$site_dir/*.dist-info
+ echo '%ghost /usr/lib/python3.11/site-packages/snakemake-7.22.0.dist-info'
+ sed -i s/pip/rpm/ /builddir/build/BUILDROOT/snakemake-7.22.0-1.fc39.x86_64/usr/lib/python3.11/site-packages/snakemake-7.22.0.dist-info/INSTALLER
+ PYTHONPATH=/usr/lib/rpm/redhat
+ /usr/bin/python3 -B /usr/lib/rpm/redhat/pyproject_preprocess_record.py --buildroot /builddir/build/BUILDROOT/snakemake-7.22.0-1.fc39.x86_64 --record /builddir/build/BUILDROOT/snakemake-7.22.0-1.fc39.x86_64/usr/lib/python3.11/site-packages/snakemake-7.22.0.dist-info/RECORD --output /builddir/build/BUILD/snakemake-7.22.0-1.fc39.x86_64-pyproject-record
+ rm -fv /builddir/build/BUILDROOT/snakemake-7.22.0-1.fc39.x86_64/usr/lib/python3.11/site-packages/snakemake-7.22.0.dist-info/RECORD
removed '/builddir/build/BUILDROOT/snakemake-7.22.0-1.fc39.x86_64/usr/lib/python3.11/site-packages/snakemake-7.22.0.dist-info/RECORD'
+ rm -fv /builddir/build/BUILDROOT/snakemake-7.22.0-1.fc39.x86_64/usr/lib/python3.11/site-packages/snakemake-7.22.0.dist-info/REQUESTED
removed '/builddir/build/BUILDROOT/snakemake-7.22.0-1.fc39.x86_64/usr/lib/python3.11/site-packages/snakemake-7.22.0.dist-info/REQUESTED'
++ wc -l /builddir/build/BUILD/snakemake-7.22.0-1.fc39.x86_64-pyproject-ghost-distinfo
++ cut -f1 '-d '
+ lines=1
+ '[' 1 -ne 1 ']'
+ /usr/bin/python3 /usr/lib/rpm/redhat/pyproject_save_files.py --output-files /builddir/build/BUILD/snakemake-7.22.0-1.fc39.x86_64-pyproject-files --output-modules /builddir/build/BUILD/snakemake-7.22.0-1.fc39.x86_64-pyproject-modules --buildroot /builddir/build/BUILDROOT/snakemake-7.22.0-1.fc39.x86_64 --sitelib /usr/lib/python3.11/site-packages --sitearch /usr/lib64/python3.11/site-packages --python-version 3.11 --pyproject-record /builddir/build/BUILD/snakemake-7.22.0-1.fc39.x86_64-pyproject-record --prefix /usr snakemake
+ /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 7.22.0-1.fc39 --unique-debug-suffix -7.22.0-1.fc39.x86_64 --unique-debug-src-base snakemake-7.22.0-1.fc39.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/snakemake-7.22.0
find: 'debug': No such file or directory
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/check-rpaths
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
+ /usr/lib/rpm/brp-remove-la-files
+ env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2
Bytecompiling .py files below /builddir/build/BUILDROOT/snakemake-7.22.0-1.fc39.x86_64/usr/lib/python3.11 using python3.11
+ /usr/lib/rpm/redhat/brp-python-hardlink
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.wf0wYA
+ umask 022
+ cd /builddir/build/BUILD
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd snakemake-7.22.0
+ k='not test_lint[long_run-positive]'
+ k='not test_lint[long_run-positive] and not test_tibanna'
+ k='not test_lint[long_run-positive] and not test_tibanna and not test_tes'
+ k='not test_lint[long_run-positive] and not test_tibanna and not test_tes and not test_slurm_'
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ PATH=/builddir/build/BUILDROOT/snakemake-7.22.0-1.fc39.x86_64/usr/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin
+ PYTHONPATH=/builddir/build/BUILDROOT/snakemake-7.22.0-1.fc39.x86_64/usr/lib64/python3.11/site-packages:/builddir/build/BUILDROOT/snakemake-7.22.0-1.fc39.x86_64/usr/lib/python3.11/site-packages
+ PYTHONDONTWRITEBYTECODE=1
+ PYTEST_ADDOPTS=' --ignore=/builddir/build/BUILD/snakemake-7.22.0/.pyproject-builddir'
+ PYTEST_XDIST_AUTO_NUM_WORKERS=2
+ /usr/bin/pytest -v -k 'not test_lint[long_run-positive] and not test_tibanna and not test_tes and not test_slurm_' --ignore tests/test_google_lifesciences.py
============================= test session starts ==============================
platform linux -- Python 3.11.2, pytest-7.2.1, pluggy-1.0.0 -- /usr/bin/python3
cachedir: .pytest_cache
rootdir: /builddir/build/BUILD/snakemake-7.22.0
plugins: requests-mock-1.10.0
collecting ... collected 64 items / 7 deselected / 57 selected
tests/test_expand.py::test_simple_expand PASSED                          [  1%]
tests/test_expand.py::test_allow_missing PASSED                          [  3%]
tests/test_io.py::test_wildcard_regex PASSED                             [  5%]
tests/test_io.py::test_expand PASSED                                     [  7%]
tests/test_kubernetes.py::test_kubernetes_plain SKIPPED (Skipping GC...) [  8%]
tests/test_kubernetes.py::test_kubernetes_conda SKIPPED (Skipping GC...) [ 10%]
tests/test_kubernetes.py::test_kubernetes_singularity SKIPPED (Skipp...) [ 12%]
tests/test_kubernetes.py::test_kubernetes_conda_singularity SKIPPED      [ 14%]
tests/test_kubernetes.py::test_issue1041 SKIPPED (Skipping GCLOUD te...) [ 15%]
tests/test_linting.py::test_lint[version-positive] PASSED                [ 17%]
tests/test_linting.py::test_lint[version-negative] PASSED                [ 19%]
tests/test_linting.py::test_lint[tab_usage-positive] PASSED              [ 21%]
tests/test_linting.py::test_lint[tab_usage-negative] PASSED              [ 22%]
tests/test_linting.py::test_lint[singularity-positive] PASSED            [ 24%]
tests/test_linting.py::test_lint[singularity-negative] PASSED            [ 26%]
tests/test_linting.py::test_lint[path_add-positive] PASSED               [ 28%]
tests/test_linting.py::test_lint[path_add-negative] PASSED               [ 29%]
tests/test_linting.py::test_lint[params_prefix-positive] PASSED          [ 31%]
tests/test_linting.py::test_lint[params_prefix-negative] PASSED          [ 33%]
tests/test_linting.py::test_lint[not_used_params-positive] PASSED        [ 35%]
tests/test_linting.py::test_lint[not_used_params-negative] PASSED        [ 36%]
tests/test_linting.py::test_lint[mixed_func_and_rules-positive] PASSED   [ 38%]
tests/test_linting.py::test_lint[mixed_func_and_rules-negative] PASSED   [ 40%]
tests/test_linting.py::test_lint[missing_software_definition-positive] PASSED [ 42%]
tests/test_linting.py::test_lint[missing_software_definition-negative] PASSED [ 43%]
tests/test_linting.py::test_lint[long_run-negative] PASSED               [ 45%]
tests/test_linting.py::test_lint[log_directive-positive] PASSED          [ 47%]
tests/test_linting.py::test_lint[log_directive-negative] PASSED          [ 49%]
tests/test_linting.py::test_lint[iofile_by_index-positive] PASSED        [ 50%]
tests/test_linting.py::test_lint[iofile_by_index-negative] PASSED        [ 52%]
tests/test_linting.py::test_lint[envvars-positive] PASSED                [ 54%]
tests/test_linting.py::test_lint[envvars-negative] PASSED                [ 56%]
tests/test_linting.py::test_lint[dynamic-positive] PASSED                [ 57%]
tests/test_linting.py::test_lint[dynamic-negative] PASSED                [ 59%]
tests/test_linting.py::test_lint[absolute_paths-positive] PASSED         [ 61%]
tests/test_linting.py::test_lint[absolute_paths-negative] PASSED         [ 63%]
tests/test_persistence.py::TestCleanupContainers::test_one_unrequired_container_gets_removed PASSED [ 64%]
tests/test_schema.py::test_config PASSED                                 [ 66%]
tests/test_schema.py::test_config_ref PASSED                             [ 68%]
tests/test_schema.py::test_dataframe PASSED                              [ 70%]
tests/test_script.py::TestRustScriptExtractManifest::test_single_line_manifest_with_shebang_and_second_manifest PASSED [ 71%]
tests/test_script.py::TestRustScriptExtractManifest::test_single_line_manifest_not_at_start_with_shebang PASSED [ 73%]
tests/test_script.py::TestRustScriptExtractManifest::test_single_line_manifest_not_at_start_without_shebang PASSED [ 75%]
tests/test_script.py::TestRustScriptExtractManifest::test_single_line_manifest_with_empty_line_without_shebang PASSED [ 77%]
tests/test_script.py::TestRustScriptExtractManifest::test_single_line_manifest_is_case_insensitive PASSED [ 78%]
tests/test_script.py::TestRustScriptExtractManifest::test_single_line_manifest_spacing_has_no_impact PASSED [ 80%]
tests/test_script.py::TestRustScriptExtractManifest::test_single_line_manifest_formatting_not_touched_even_if_wrong PASSED [ 82%]
tests/test_script.py::TestRustScriptExtractManifest::test_single_line_manifest_spelt_wrong PASSED [ 84%]
tests/test_script.py::TestRustScriptExtractManifest::test_code_block_manifest_with_shebang PASSED [ 85%]
tests/test_script.py::TestRustScriptExtractManifest::test_code_block_manifest_without_shebang PASSED [ 87%]
tests/test_script.py::TestRustScriptExtractManifest::test_code_block_manifest_spacing_around_language PASSED [ 89%]
tests/test_script.py::TestRustScriptExtractManifest::test_code_block_manifest_has_non_cargo_block PASSED [ 91%]
tests/test_script.py::TestRustScriptExtractManifest::test_code_block_manifest_missing_closing_fence PASSED [ 92%]
tests/test_script.py::TestRustScriptExtractManifest::test_code_block_manifest_not_in_first_comment_block PASSED [ 94%]
tests/test_script.py::TestRustScriptExtractManifest::test_code_block_manifest_with_outer_line_doc_comment PASSED [ 96%]
tests/test_script.py::TestBashEncoder::test_named_list_one_named_one_str PASSED [ 98%]
tests/test_script.py::TestBashEncoder::test_named_list_named_is_list PASSED [100%]
=============================== warnings summary ===============================
snakemake/rules.py:14
  /builddir/build/BUILD/snakemake-7.22.0/snakemake/rules.py:14: DeprecationWarning: module 'sre_constants' is deprecated
    import sre_constants
tests/test_schema.py::test_config
  /usr/lib/python3.11/site-packages/google/cloud/storage/blob.py:21: DeprecationWarning: 'cgi' is deprecated and slated for removal in Python 3.13
    import cgi
-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
=========== 52 passed, 5 skipped, 7 deselected, 2 warnings in 15.17s ===========
+ RPM_EC=0
++ jobs -p
+ exit 0
Processing files: snakemake-7.22.0-1.fc39.noarch
Provides: python3.11dist(snakemake) = 7.22 python3dist(snakemake) = 7.22 snakemake = 7.22.0-1.fc39
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: (python3.11dist(jinja2) < 4~~ with python3.11dist(jinja2) >= 3) (python3.11dist(yte) < 2~~ with python3.11dist(yte) >= 1) /usr/bin/python3 python(abi) = 3.11 python3.11dist(appdirs) python3.11dist(configargparse) python3.11dist(connection-pool) >= 0.0.3 python3.11dist(datrie) python3.11dist(docutils) python3.11dist(gitpython) python3.11dist(humanfriendly) python3.11dist(jsonschema) python3.11dist(nbformat) python3.11dist(psutil) python3.11dist(pulp) >= 2 python3.11dist(pyyaml) python3.11dist(requests) python3.11dist(reretry) python3.11dist(smart-open) >= 3 python3.11dist(stopit) python3.11dist(tabulate) python3.11dist(throttler) python3.11dist(toposort) python3.11dist(wrapt)
Processing files: snakemake-doc-7.22.0-1.fc39.noarch
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.FdUBhk
+ umask 022
+ cd /builddir/build/BUILD
+ cd snakemake-7.22.0
+ DOCDIR=/builddir/build/BUILDROOT/snakemake-7.22.0-1.fc39.x86_64/usr/share/doc/snakemake-doc
+ export LC_ALL=C
+ LC_ALL=C
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/snakemake-7.22.0-1.fc39.x86_64/usr/share/doc/snakemake-doc
+ cp -pr CHANGELOG.md /builddir/build/BUILDROOT/snakemake-7.22.0-1.fc39.x86_64/usr/share/doc/snakemake-doc
+ cp -pr CODE_OF_CONDUCT.md /builddir/build/BUILDROOT/snakemake-7.22.0-1.fc39.x86_64/usr/share/doc/snakemake-doc
+ cp -pr README.md /builddir/build/BUILDROOT/snakemake-7.22.0-1.fc39.x86_64/usr/share/doc/snakemake-doc
+ cp -pr docs/_build/latex/Snakemake.pdf /builddir/build/BUILDROOT/snakemake-7.22.0-1.fc39.x86_64/usr/share/doc/snakemake-doc
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.Seo0i7
+ umask 022
+ cd /builddir/build/BUILD
+ cd snakemake-7.22.0
+ LICENSEDIR=/builddir/build/BUILDROOT/snakemake-7.22.0-1.fc39.x86_64/usr/share/licenses/snakemake-doc
+ export LC_ALL=C
+ LC_ALL=C
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/snakemake-7.22.0-1.fc39.x86_64/usr/share/licenses/snakemake-doc
+ cp -pr LICENSE.md /builddir/build/BUILDROOT/snakemake-7.22.0-1.fc39.x86_64/usr/share/licenses/snakemake-doc
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: snakemake-doc = 7.22.0-1.fc39
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: snakemake+reports-7.22.0-1.fc39.noarch
Provides: python3.11dist(snakemake[reports]) = 7.22 python3dist(snakemake[reports]) = 7.22 snakemake+reports = 7.22.0-1.fc39
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: python(abi) = 3.11 python3.11dist(pygments)
Processing files: snakemake+messaging-7.22.0-1.fc39.noarch
Provides: python3.11dist(snakemake[messaging]) = 7.22 python3dist(snakemake[messaging]) = 7.22 snakemake+messaging = 7.22.0-1.fc39
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: python(abi) = 3.11 python3.11dist(slacker)
Processing files: snakemake+google-cloud-7.22.0-1.fc39.noarch
Provides: python3.11dist(snakemake[google-cloud]) = 7.22 python3dist(snakemake[google-cloud]) = 7.22 snakemake+google-cloud = 7.22.0-1.fc39
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: python(abi) = 3.11 python3.11dist(google-api-python-client) python3.11dist(google-cloud-storage) python3.11dist(google-crc32c) python3.11dist(oauth2client)
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/snakemake-7.22.0-1.fc39.x86_64
Wrote: /builddir/build/SRPMS/snakemake-7.22.0-1.fc39.src.rpm
Wrote: /builddir/build/RPMS/snakemake-doc-7.22.0-1.fc39.noarch.rpm
Wrote: /builddir/build/RPMS/snakemake+reports-7.22.0-1.fc39.noarch.rpm
Wrote: /builddir/build/RPMS/snakemake+messaging-7.22.0-1.fc39.noarch.rpm
Wrote: /builddir/build/RPMS/snakemake+google-cloud-7.22.0-1.fc39.noarch.rpm
Wrote: /builddir/build/RPMS/snakemake-7.22.0-1.fc39.noarch.rpm
Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.bWRiis
+ umask 022
+ cd /builddir/build/BUILD
+ cd snakemake-7.22.0
+ /usr/bin/rm -rf /builddir/build/BUILDROOT/snakemake-7.22.0-1.fc39.x86_64
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.fkIIPI
+ umask 022
+ cd /builddir/build/BUILD
+ rm -rf snakemake-7.22.0 snakemake-7.22.0.gemspec
+ RPM_EC=0
++ jobs -p
+ exit 0
Child return code was: 0