Mock Version: 3.5 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/python-pyphi.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1676552011.694639/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.i1jfh_hz:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.i1jfh_hz:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'd82ef88ad8694a6dbbda5f76aa59c279', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1676552011.694639/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.i1jfh_hz:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/python-pyphi.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1674172800 Wrote: /builddir/build/SRPMS/python-pyphi-1.2.1-6.fc39.src.rpm Child return code was: 0 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -br --target x86_64 --nodeps /builddir/build/SPECS/python-pyphi.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1676552011.694639/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.i1jfh_hz:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueraiseExc=FalseprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.i1jfh_hz:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '1b3153a425c44139ac4874a43291eef9', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1676552011.694639/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.i1jfh_hz:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -br --target x86_64 --nodeps /builddir/build/SPECS/python-pyphi.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1674172800 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.V8Vle3 + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf pyphi-1.2.1 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/pyphi-1.2.1.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd pyphi-1.2.1 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + /usr/bin/git init -q + /usr/bin/git config user.name rpm-build + /usr/bin/git config user.email '' + /usr/bin/git config gc.auto 0 + /usr/bin/git add --force . + /usr/bin/git commit -q --allow-empty -a --author 'rpm-build ' -m 'python-pyphi-1.2.1 base' + /usr/bin/git checkout --track -b rpm-build Switched to a new branch 'rpm-build' branch 'rpm-build' set up to track 'master'. + /usr/bin/git apply --index --reject - + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0001-fix-py3.10-correct-collections-import.patch Checking patch pyphi/db.py... Checking patch pyphi/labels.py... Checking patch pyphi/models/actual_causation.py... Checking patch pyphi/models/cmp.py... Checking patch pyphi/models/cuts.py... Checking patch pyphi/models/subsystem.py... Checking patch pyphi/registry.py... Applied patch pyphi/db.py cleanly. Applied patch pyphi/labels.py cleanly. Applied patch pyphi/models/actual_causation.py cleanly. Applied patch pyphi/models/cmp.py cleanly. Applied patch pyphi/models/cuts.py cleanly. Applied patch pyphi/models/subsystem.py cleanly. Applied patch pyphi/registry.py cleanly. + /usr/bin/git commit -q -m 0001-fix-py3.10-correct-collections-import.patch --author 'rpm-build ' + sed -i s/sphinxcontrib.napoleon/sphinx.ext.napoleon/ docs/conf.py + find pyphi -name '*.py' -exec sed -i '/#!\/usr\/bin\/env python3/ d' '{}' ';' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.aF1LPm + umask 022 + cd /builddir/build/BUILD + cd pyphi-1.2.1 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + '[' -f setup.py ']' + echo 'python3dist(setuptools) >= 40.8' + echo 'python3dist(wheel)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/pyphi-1.2.1/.pyproject-builddir + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + TMPDIR=/builddir/build/BUILD/pyphi-1.2.1/.pyproject-builddir + RPM_TOXENV=py311 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/pyphi-1.2.1/pyproject-wheeldir -r Handling setuptools >= 40.8 from default build backend Requirement satisfied: setuptools >= 40.8 (installed: setuptools 65.5.1) Handling wheel from default build backend Requirement not satisfied: wheel Exiting dependency generation pass: build backend + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-pyphi-1.2.1-6.fc39.buildreqs.nosrc.rpm Child return code was: 11 Dynamic buildrequires detected Going to install missing buildrequires. See root.log for details. ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -br --target x86_64 --nodeps /builddir/build/SPECS/python-pyphi.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1676552011.694639/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.i1jfh_hz:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueraiseExc=FalseprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.i1jfh_hz:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'b898ea4c98b44d9ab26b682663315f78', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1676552011.694639/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.i1jfh_hz:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -br --target x86_64 --nodeps /builddir/build/SPECS/python-pyphi.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1674172800 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.X5YXWu + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf pyphi-1.2.1 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/pyphi-1.2.1.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd pyphi-1.2.1 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + /usr/bin/git init -q + /usr/bin/git config user.name rpm-build + /usr/bin/git config user.email '' + /usr/bin/git config gc.auto 0 + /usr/bin/git add --force . + /usr/bin/git commit -q --allow-empty -a --author 'rpm-build ' -m 'python-pyphi-1.2.1 base' + /usr/bin/git checkout --track -b rpm-build Switched to a new branch 'rpm-build' branch 'rpm-build' set up to track 'master'. + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0001-fix-py3.10-correct-collections-import.patch + /usr/bin/git apply --index --reject - Checking patch pyphi/db.py... Checking patch pyphi/labels.py... Checking patch pyphi/models/actual_causation.py... Checking patch pyphi/models/cmp.py... Checking patch pyphi/models/cuts.py... Checking patch pyphi/models/subsystem.py... Checking patch pyphi/registry.py... Applied patch pyphi/db.py cleanly. Applied patch pyphi/labels.py cleanly. Applied patch pyphi/models/actual_causation.py cleanly. Applied patch pyphi/models/cmp.py cleanly. Applied patch pyphi/models/cuts.py cleanly. Applied patch pyphi/models/subsystem.py cleanly. Applied patch pyphi/registry.py cleanly. + /usr/bin/git commit -q -m 0001-fix-py3.10-correct-collections-import.patch --author 'rpm-build ' + sed -i s/sphinxcontrib.napoleon/sphinx.ext.napoleon/ docs/conf.py + find pyphi -name '*.py' -exec sed -i '/#!\/usr\/bin\/env python3/ d' '{}' ';' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.heW430 + umask 022 + cd /builddir/build/BUILD + cd pyphi-1.2.1 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + '[' -f setup.py ']' + echo 'python3dist(setuptools) >= 40.8' + echo 'python3dist(wheel)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/pyphi-1.2.1/.pyproject-builddir + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + TMPDIR=/builddir/build/BUILD/pyphi-1.2.1/.pyproject-builddir + RPM_TOXENV=py311 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/pyphi-1.2.1/pyproject-wheeldir -r Handling setuptools >= 40.8 from default build backend Requirement satisfied: setuptools >= 40.8 (installed: setuptools 65.5.1) Handling wheel from default build backend Requirement satisfied: wheel (installed: wheel 0.38.4) /usr/lib/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'upload-dir' will not be supported in future versions. Please use the underscore name 'upload_dir' instead warnings.warn( HOOK STDOUT: running egg_info HOOK STDOUT: creating pyphi.egg-info HOOK STDOUT: writing pyphi.egg-info/PKG-INFO HOOK STDOUT: writing dependency_links to pyphi.egg-info/dependency_links.txt HOOK STDOUT: writing requirements to pyphi.egg-info/requires.txt HOOK STDOUT: writing top-level names to pyphi.egg-info/top_level.txt HOOK STDOUT: writing manifest file 'pyphi.egg-info/SOURCES.txt' HOOK STDOUT: reading manifest file 'pyphi.egg-info/SOURCES.txt' HOOK STDOUT: reading manifest template 'MANIFEST.in' HOOK STDOUT: adding license file 'LICENSE.md' HOOK STDOUT: writing manifest file 'pyphi.egg-info/SOURCES.txt' Handling wheel from get_requires_for_build_wheel Requirement satisfied: wheel (installed: wheel 0.38.4) HOOK STDOUT: running dist_info HOOK STDOUT: writing pyphi.egg-info/PKG-INFO HOOK STDOUT: writing dependency_links to pyphi.egg-info/dependency_links.txt HOOK STDOUT: writing requirements to pyphi.egg-info/requires.txt HOOK STDOUT: writing top-level names to pyphi.egg-info/top_level.txt HOOK STDOUT: reading manifest file 'pyphi.egg-info/SOURCES.txt' HOOK STDOUT: reading manifest template 'MANIFEST.in' HOOK STDOUT: adding license file 'LICENSE.md' HOOK STDOUT: writing manifest file 'pyphi.egg-info/SOURCES.txt' HOOK STDOUT: creating '/builddir/build/BUILD/pyphi-1.2.1/pyphi-1.2.1.dist-info' Handling decorator (>=4.0.0) from hook generated metadata: Requires-Dist Requirement not satisfied: decorator (>=4.0.0) Handling joblib (>=0.8.0) from hook generated metadata: Requires-Dist Requirement not satisfied: joblib (>=0.8.0) Handling numpy (>=1.11.0) from hook generated metadata: Requires-Dist Requirement not satisfied: numpy (>=1.11.0) Handling psutil (>=2.1.1) from hook generated metadata: Requires-Dist Requirement not satisfied: psutil (>=2.1.1) Handling pyemd (>=0.3.0) from hook generated metadata: Requires-Dist Requirement not satisfied: pyemd (>=0.3.0) Handling pymongo (>=2.7.1) from hook generated metadata: Requires-Dist Requirement not satisfied: pymongo (>=2.7.1) Handling pyyaml (>=3.13) from hook generated metadata: Requires-Dist Requirement not satisfied: pyyaml (>=3.13) Handling redis (>=2.10.5) from hook generated metadata: Requires-Dist Requirement not satisfied: redis (>=2.10.5) Handling scipy (>=0.13.3) from hook generated metadata: Requires-Dist Requirement not satisfied: scipy (>=0.13.3) Handling tblib (>=1.3.2) from hook generated metadata: Requires-Dist Requirement not satisfied: tblib (>=1.3.2) Handling tqdm (>=4.20.0) from hook generated metadata: Requires-Dist Requirement not satisfied: tqdm (>=4.20.0) + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-pyphi-1.2.1-6.fc39.buildreqs.nosrc.rpm Child return code was: 11 Dynamic buildrequires detected Going to install missing buildrequires. See root.log for details. ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -br --target x86_64 --nodeps /builddir/build/SPECS/python-pyphi.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1676552011.694639/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.i1jfh_hz:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueraiseExc=FalseprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.i1jfh_hz:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'de506d45dc5940cfbf540f3aea0789ee', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1676552011.694639/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.i1jfh_hz:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -br --target x86_64 --nodeps /builddir/build/SPECS/python-pyphi.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1674172800 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.KatcZA + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf pyphi-1.2.1 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/pyphi-1.2.1.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd pyphi-1.2.1 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + /usr/bin/git init -q + /usr/bin/git config user.name rpm-build + /usr/bin/git config user.email '' + /usr/bin/git config gc.auto 0 + /usr/bin/git add --force . + /usr/bin/git commit -q --allow-empty -a --author 'rpm-build ' -m 'python-pyphi-1.2.1 base' + /usr/bin/git checkout --track -b rpm-build Switched to a new branch 'rpm-build' branch 'rpm-build' set up to track 'master'. + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0001-fix-py3.10-correct-collections-import.patch + /usr/bin/git apply --index --reject - Checking patch pyphi/db.py... Checking patch pyphi/labels.py... Checking patch pyphi/models/actual_causation.py... Checking patch pyphi/models/cmp.py... Checking patch pyphi/models/cuts.py... Checking patch pyphi/models/subsystem.py... Checking patch pyphi/registry.py... Applied patch pyphi/db.py cleanly. Applied patch pyphi/labels.py cleanly. Applied patch pyphi/models/actual_causation.py cleanly. Applied patch pyphi/models/cmp.py cleanly. Applied patch pyphi/models/cuts.py cleanly. Applied patch pyphi/models/subsystem.py cleanly. Applied patch pyphi/registry.py cleanly. + /usr/bin/git commit -q -m 0001-fix-py3.10-correct-collections-import.patch --author 'rpm-build ' + sed -i s/sphinxcontrib.napoleon/sphinx.ext.napoleon/ docs/conf.py + find pyphi -name '*.py' -exec sed -i '/#!\/usr\/bin\/env python3/ d' '{}' ';' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.Sh00TA + umask 022 + cd /builddir/build/BUILD + cd pyphi-1.2.1 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + '[' -f setup.py ']' + echo 'python3dist(setuptools) >= 40.8' + echo 'python3dist(wheel)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/pyphi-1.2.1/.pyproject-builddir + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + TMPDIR=/builddir/build/BUILD/pyphi-1.2.1/.pyproject-builddir + RPM_TOXENV=py311 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/pyphi-1.2.1/pyproject-wheeldir -r Handling setuptools >= 40.8 from default build backend Requirement satisfied: setuptools >= 40.8 (installed: setuptools 65.5.1) Handling wheel from default build backend Requirement satisfied: wheel (installed: wheel 0.38.4) /usr/lib/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'upload-dir' will not be supported in future versions. Please use the underscore name 'upload_dir' instead warnings.warn( HOOK STDOUT: running egg_info HOOK STDOUT: creating pyphi.egg-info HOOK STDOUT: writing pyphi.egg-info/PKG-INFO HOOK STDOUT: writing dependency_links to pyphi.egg-info/dependency_links.txt HOOK STDOUT: writing requirements to pyphi.egg-info/requires.txt HOOK STDOUT: writing top-level names to pyphi.egg-info/top_level.txt HOOK STDOUT: writing manifest file 'pyphi.egg-info/SOURCES.txt' HOOK STDOUT: reading manifest file 'pyphi.egg-info/SOURCES.txt' HOOK STDOUT: reading manifest template 'MANIFEST.in' HOOK STDOUT: adding license file 'LICENSE.md' HOOK STDOUT: writing manifest file 'pyphi.egg-info/SOURCES.txt' Handling wheel from get_requires_for_build_wheel Requirement satisfied: wheel (installed: wheel 0.38.4) HOOK STDOUT: running dist_info HOOK STDOUT: writing pyphi.egg-info/PKG-INFO HOOK STDOUT: writing dependency_links to pyphi.egg-info/dependency_links.txt HOOK STDOUT: writing requirements to pyphi.egg-info/requires.txt HOOK STDOUT: writing top-level names to pyphi.egg-info/top_level.txt HOOK STDOUT: reading manifest file 'pyphi.egg-info/SOURCES.txt' HOOK STDOUT: reading manifest template 'MANIFEST.in' HOOK STDOUT: adding license file 'LICENSE.md' HOOK STDOUT: writing manifest file 'pyphi.egg-info/SOURCES.txt' HOOK STDOUT: creating '/builddir/build/BUILD/pyphi-1.2.1/pyphi-1.2.1.dist-info' Handling decorator (>=4.0.0) from hook generated metadata: Requires-Dist Requirement satisfied: decorator (>=4.0.0) (installed: decorator 5.1.1) Handling joblib (>=0.8.0) from hook generated metadata: Requires-Dist Requirement satisfied: joblib (>=0.8.0) (installed: joblib 1.2.0) Handling numpy (>=1.11.0) from hook generated metadata: Requires-Dist Requirement satisfied: numpy (>=1.11.0) (installed: numpy 1.24.1) Handling psutil (>=2.1.1) from hook generated metadata: Requires-Dist Requirement satisfied: psutil (>=2.1.1) (installed: psutil 5.9.2) Handling pyemd (>=0.3.0) from hook generated metadata: Requires-Dist Requirement satisfied: pyemd (>=0.3.0) (installed: pyemd 0.5.1) Handling pymongo (>=2.7.1) from hook generated metadata: Requires-Dist Requirement satisfied: pymongo (>=2.7.1) (installed: pymongo 4.2.0) Handling pyyaml (>=3.13) from hook generated metadata: Requires-Dist Requirement satisfied: pyyaml (>=3.13) (installed: pyyaml 6.0) Handling redis (>=2.10.5) from hook generated metadata: Requires-Dist Requirement satisfied: redis (>=2.10.5) (installed: redis 4.3.4) Handling scipy (>=0.13.3) from hook generated metadata: Requires-Dist Requirement satisfied: scipy (>=0.13.3) (installed: scipy 1.8.1) Handling tblib (>=1.3.2) from hook generated metadata: Requires-Dist Requirement satisfied: tblib (>=1.3.2) (installed: tblib 1.7.0) Handling tqdm (>=4.20.0) from hook generated metadata: Requires-Dist Requirement satisfied: tqdm (>=4.20.0) (installed: tqdm 4.64.1) + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-pyphi-1.2.1-6.fc39.buildreqs.nosrc.rpm Child return code was: 11 Dynamic buildrequires detected Going to install missing buildrequires. See root.log for details. ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -ba --noprep --target x86_64 --nodeps /builddir/build/SPECS/python-pyphi.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1676552011.694639/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.i1jfh_hz:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.i1jfh_hz:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '9a9bde28e1b1451bbbc806c254c7e3bd', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1676552011.694639/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.i1jfh_hz:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -ba --noprep --target x86_64 --nodeps /builddir/build/SPECS/python-pyphi.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1674172800 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.4C48XL + umask 022 + cd /builddir/build/BUILD + cd pyphi-1.2.1 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + '[' -f setup.py ']' + echo 'python3dist(setuptools) >= 40.8' + echo 'python3dist(wheel)' + rm -rfv pyphi-1.2.1.dist-info/ removed 'pyphi-1.2.1.dist-info/LICENSE.md' removed 'pyphi-1.2.1.dist-info/METADATA' removed 'pyphi-1.2.1.dist-info/top_level.txt' removed directory 'pyphi-1.2.1.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/pyphi-1.2.1/.pyproject-builddir + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + TMPDIR=/builddir/build/BUILD/pyphi-1.2.1/.pyproject-builddir + RPM_TOXENV=py311 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/pyphi-1.2.1/pyproject-wheeldir -r Handling setuptools >= 40.8 from default build backend Requirement satisfied: setuptools >= 40.8 (installed: setuptools 65.5.1) Handling wheel from default build backend Requirement satisfied: wheel (installed: wheel 0.38.4) /usr/lib/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'upload-dir' will not be supported in future versions. Please use the underscore name 'upload_dir' instead warnings.warn( HOOK STDOUT: running egg_info HOOK STDOUT: writing pyphi.egg-info/PKG-INFO HOOK STDOUT: writing dependency_links to pyphi.egg-info/dependency_links.txt HOOK STDOUT: writing requirements to pyphi.egg-info/requires.txt HOOK STDOUT: writing top-level names to pyphi.egg-info/top_level.txt HOOK STDOUT: reading manifest file 'pyphi.egg-info/SOURCES.txt' HOOK STDOUT: reading manifest template 'MANIFEST.in' HOOK STDOUT: adding license file 'LICENSE.md' HOOK STDOUT: writing manifest file 'pyphi.egg-info/SOURCES.txt' Handling wheel from get_requires_for_build_wheel Requirement satisfied: wheel (installed: wheel 0.38.4) HOOK STDOUT: running dist_info HOOK STDOUT: writing pyphi.egg-info/PKG-INFO HOOK STDOUT: writing dependency_links to pyphi.egg-info/dependency_links.txt HOOK STDOUT: writing requirements to pyphi.egg-info/requires.txt HOOK STDOUT: writing top-level names to pyphi.egg-info/top_level.txt HOOK STDOUT: reading manifest file 'pyphi.egg-info/SOURCES.txt' HOOK STDOUT: reading manifest template 'MANIFEST.in' HOOK STDOUT: adding license file 'LICENSE.md' HOOK STDOUT: writing manifest file 'pyphi.egg-info/SOURCES.txt' HOOK STDOUT: creating '/builddir/build/BUILD/pyphi-1.2.1/pyphi-1.2.1.dist-info' Handling decorator (>=4.0.0) from hook generated metadata: Requires-Dist Requirement satisfied: decorator (>=4.0.0) (installed: decorator 5.1.1) Handling joblib (>=0.8.0) from hook generated metadata: Requires-Dist Requirement satisfied: joblib (>=0.8.0) (installed: joblib 1.2.0) Handling numpy (>=1.11.0) from hook generated metadata: Requires-Dist Requirement satisfied: numpy (>=1.11.0) (installed: numpy 1.24.1) Handling psutil (>=2.1.1) from hook generated metadata: Requires-Dist Requirement satisfied: psutil (>=2.1.1) (installed: psutil 5.9.2) Handling pyemd (>=0.3.0) from hook generated metadata: Requires-Dist Requirement satisfied: pyemd (>=0.3.0) (installed: pyemd 0.5.1) Handling pymongo (>=2.7.1) from hook generated metadata: Requires-Dist Requirement satisfied: pymongo (>=2.7.1) (installed: pymongo 4.2.0) Handling pyyaml (>=3.13) from hook generated metadata: Requires-Dist Requirement satisfied: pyyaml (>=3.13) (installed: pyyaml 6.0) Handling redis (>=2.10.5) from hook generated metadata: Requires-Dist Requirement satisfied: redis (>=2.10.5) (installed: redis 4.3.4) Handling scipy (>=0.13.3) from hook generated metadata: Requires-Dist Requirement satisfied: scipy (>=0.13.3) (installed: scipy 1.8.1) Handling tblib (>=1.3.2) from hook generated metadata: Requires-Dist Requirement satisfied: tblib (>=1.3.2) (installed: tblib 1.7.0) Handling tqdm (>=4.20.0) from hook generated metadata: Requires-Dist Requirement satisfied: tqdm (>=4.20.0) (installed: tqdm 4.64.1) + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.WYB4Ak + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd pyphi-1.2.1 + mkdir -p /builddir/build/BUILD/pyphi-1.2.1/.pyproject-builddir + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + TMPDIR=/builddir/build/BUILD/pyphi-1.2.1/.pyproject-builddir + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_wheel.py /builddir/build/BUILD/pyphi-1.2.1/pyproject-wheeldir Processing /builddir/build/BUILD/pyphi-1.2.1 Preparing metadata (pyproject.toml): started Running command Preparing metadata (pyproject.toml) /usr/lib/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'upload-dir' will not be supported in future versions. Please use the underscore name 'upload_dir' instead warnings.warn( running dist_info creating /builddir/build/BUILD/pyphi-1.2.1/.pyproject-builddir/pip-modern-metadata-d279h213/pyphi.egg-info writing /builddir/build/BUILD/pyphi-1.2.1/.pyproject-builddir/pip-modern-metadata-d279h213/pyphi.egg-info/PKG-INFO writing dependency_links to /builddir/build/BUILD/pyphi-1.2.1/.pyproject-builddir/pip-modern-metadata-d279h213/pyphi.egg-info/dependency_links.txt writing requirements to /builddir/build/BUILD/pyphi-1.2.1/.pyproject-builddir/pip-modern-metadata-d279h213/pyphi.egg-info/requires.txt writing top-level names to /builddir/build/BUILD/pyphi-1.2.1/.pyproject-builddir/pip-modern-metadata-d279h213/pyphi.egg-info/top_level.txt writing manifest file '/builddir/build/BUILD/pyphi-1.2.1/.pyproject-builddir/pip-modern-metadata-d279h213/pyphi.egg-info/SOURCES.txt' reading manifest file '/builddir/build/BUILD/pyphi-1.2.1/.pyproject-builddir/pip-modern-metadata-d279h213/pyphi.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.md' writing manifest file '/builddir/build/BUILD/pyphi-1.2.1/.pyproject-builddir/pip-modern-metadata-d279h213/pyphi.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/pyphi-1.2.1/.pyproject-builddir/pip-modern-metadata-d279h213/pyphi-1.2.1.dist-info' Preparing metadata (pyproject.toml): finished with status 'done' Building wheels for collected packages: pyphi Building wheel for pyphi (pyproject.toml): started Running command Building wheel for pyphi (pyproject.toml) /usr/lib/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'upload-dir' will not be supported in future versions. Please use the underscore name 'upload_dir' instead warnings.warn( running bdist_wheel running build running build_py creating build creating build/lib creating build/lib/pyphi copying pyphi/__about__.py -> build/lib/pyphi copying pyphi/__init__.py -> build/lib/pyphi copying pyphi/actual.py -> build/lib/pyphi copying pyphi/cache.py -> build/lib/pyphi copying pyphi/conf.py -> build/lib/pyphi copying pyphi/connectivity.py -> build/lib/pyphi copying pyphi/constants.py -> build/lib/pyphi copying pyphi/convert.py -> build/lib/pyphi copying pyphi/direction.py -> build/lib/pyphi copying pyphi/distance.py -> build/lib/pyphi copying pyphi/distribution.py -> build/lib/pyphi copying pyphi/examples.py -> build/lib/pyphi copying pyphi/exceptions.py -> build/lib/pyphi copying pyphi/jsonify.py -> build/lib/pyphi copying pyphi/log.py -> build/lib/pyphi copying pyphi/macro.py -> build/lib/pyphi copying pyphi/memory.py -> build/lib/pyphi copying pyphi/network.py -> build/lib/pyphi copying pyphi/node.py -> build/lib/pyphi copying pyphi/partition.py -> build/lib/pyphi copying pyphi/subsystem.py -> build/lib/pyphi copying pyphi/timescale.py -> build/lib/pyphi copying pyphi/tpm.py -> build/lib/pyphi copying pyphi/utils.py -> build/lib/pyphi copying pyphi/validate.py -> build/lib/pyphi copying pyphi/db.py -> build/lib/pyphi copying pyphi/labels.py -> build/lib/pyphi copying pyphi/registry.py -> build/lib/pyphi creating build/lib/pyphi/models copying pyphi/models/__init__.py -> build/lib/pyphi/models copying pyphi/models/fmt.py -> build/lib/pyphi/models copying pyphi/models/mechanism.py -> build/lib/pyphi/models copying pyphi/models/actual_causation.py -> build/lib/pyphi/models copying pyphi/models/cmp.py -> build/lib/pyphi/models copying pyphi/models/cuts.py -> build/lib/pyphi/models copying pyphi/models/subsystem.py -> build/lib/pyphi/models creating build/lib/pyphi/compute copying pyphi/compute/__init__.py -> build/lib/pyphi/compute copying pyphi/compute/distance.py -> build/lib/pyphi/compute copying pyphi/compute/network.py -> build/lib/pyphi/compute copying pyphi/compute/parallel.py -> build/lib/pyphi/compute copying pyphi/compute/subsystem.py -> build/lib/pyphi/compute running egg_info writing pyphi.egg-info/PKG-INFO writing dependency_links to pyphi.egg-info/dependency_links.txt writing requirements to pyphi.egg-info/requires.txt writing top-level names to pyphi.egg-info/top_level.txt reading manifest file 'pyphi.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.md' writing manifest file 'pyphi.egg-info/SOURCES.txt' /usr/lib/python3.11/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyphi.data.hamming_matrices' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'pyphi.data.hamming_matrices' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'pyphi.data.hamming_matrices' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'pyphi.data.hamming_matrices' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/lib/python3.11/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyphi.data.partition_lists' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'pyphi.data.partition_lists' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'pyphi.data.partition_lists' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'pyphi.data.partition_lists' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) creating build/lib/pyphi/data creating build/lib/pyphi/data/hamming_matrices copying pyphi/data/hamming_matrices/0.npy -> build/lib/pyphi/data/hamming_matrices copying pyphi/data/hamming_matrices/1.npy -> build/lib/pyphi/data/hamming_matrices copying pyphi/data/hamming_matrices/2.npy -> build/lib/pyphi/data/hamming_matrices copying pyphi/data/hamming_matrices/3.npy -> build/lib/pyphi/data/hamming_matrices copying pyphi/data/hamming_matrices/4.npy -> build/lib/pyphi/data/hamming_matrices copying pyphi/data/hamming_matrices/5.npy -> build/lib/pyphi/data/hamming_matrices copying pyphi/data/hamming_matrices/6.npy -> build/lib/pyphi/data/hamming_matrices copying pyphi/data/hamming_matrices/7.npy -> build/lib/pyphi/data/hamming_matrices copying pyphi/data/hamming_matrices/8.npy -> build/lib/pyphi/data/hamming_matrices copying pyphi/data/hamming_matrices/9.npy -> build/lib/pyphi/data/hamming_matrices creating build/lib/pyphi/data/partition_lists copying pyphi/data/partition_lists/0.npy -> build/lib/pyphi/data/partition_lists copying pyphi/data/partition_lists/1.npy -> build/lib/pyphi/data/partition_lists copying pyphi/data/partition_lists/2.npy -> build/lib/pyphi/data/partition_lists copying pyphi/data/partition_lists/3.npy -> build/lib/pyphi/data/partition_lists copying pyphi/data/partition_lists/4.npy -> build/lib/pyphi/data/partition_lists copying pyphi/data/partition_lists/5.npy -> build/lib/pyphi/data/partition_lists copying pyphi/data/partition_lists/6.npy -> build/lib/pyphi/data/partition_lists copying pyphi/data/partition_lists/7.npy -> build/lib/pyphi/data/partition_lists copying pyphi/data/partition_lists/8.npy -> build/lib/pyphi/data/partition_lists copying pyphi/data/partition_lists/9.npy -> build/lib/pyphi/data/partition_lists installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64 creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/pyphi creating build/bdist.linux-x86_64/wheel/pyphi/data creating build/bdist.linux-x86_64/wheel/pyphi/data/partition_lists copying build/lib/pyphi/data/partition_lists/9.npy -> build/bdist.linux-x86_64/wheel/pyphi/data/partition_lists copying build/lib/pyphi/data/partition_lists/8.npy -> build/bdist.linux-x86_64/wheel/pyphi/data/partition_lists copying build/lib/pyphi/data/partition_lists/7.npy -> build/bdist.linux-x86_64/wheel/pyphi/data/partition_lists copying build/lib/pyphi/data/partition_lists/6.npy -> build/bdist.linux-x86_64/wheel/pyphi/data/partition_lists copying build/lib/pyphi/data/partition_lists/5.npy -> build/bdist.linux-x86_64/wheel/pyphi/data/partition_lists copying build/lib/pyphi/data/partition_lists/4.npy -> build/bdist.linux-x86_64/wheel/pyphi/data/partition_lists copying build/lib/pyphi/data/partition_lists/3.npy -> build/bdist.linux-x86_64/wheel/pyphi/data/partition_lists copying build/lib/pyphi/data/partition_lists/2.npy -> build/bdist.linux-x86_64/wheel/pyphi/data/partition_lists copying build/lib/pyphi/data/partition_lists/1.npy -> build/bdist.linux-x86_64/wheel/pyphi/data/partition_lists copying build/lib/pyphi/data/partition_lists/0.npy -> build/bdist.linux-x86_64/wheel/pyphi/data/partition_lists creating build/bdist.linux-x86_64/wheel/pyphi/data/hamming_matrices copying build/lib/pyphi/data/hamming_matrices/9.npy -> build/bdist.linux-x86_64/wheel/pyphi/data/hamming_matrices copying build/lib/pyphi/data/hamming_matrices/8.npy -> build/bdist.linux-x86_64/wheel/pyphi/data/hamming_matrices copying build/lib/pyphi/data/hamming_matrices/7.npy -> build/bdist.linux-x86_64/wheel/pyphi/data/hamming_matrices copying build/lib/pyphi/data/hamming_matrices/6.npy -> build/bdist.linux-x86_64/wheel/pyphi/data/hamming_matrices copying build/lib/pyphi/data/hamming_matrices/5.npy -> build/bdist.linux-x86_64/wheel/pyphi/data/hamming_matrices copying build/lib/pyphi/data/hamming_matrices/4.npy -> build/bdist.linux-x86_64/wheel/pyphi/data/hamming_matrices copying build/lib/pyphi/data/hamming_matrices/3.npy -> build/bdist.linux-x86_64/wheel/pyphi/data/hamming_matrices copying build/lib/pyphi/data/hamming_matrices/2.npy -> build/bdist.linux-x86_64/wheel/pyphi/data/hamming_matrices copying build/lib/pyphi/data/hamming_matrices/1.npy -> build/bdist.linux-x86_64/wheel/pyphi/data/hamming_matrices copying build/lib/pyphi/data/hamming_matrices/0.npy -> build/bdist.linux-x86_64/wheel/pyphi/data/hamming_matrices creating build/bdist.linux-x86_64/wheel/pyphi/compute copying build/lib/pyphi/compute/subsystem.py -> build/bdist.linux-x86_64/wheel/pyphi/compute copying build/lib/pyphi/compute/parallel.py -> build/bdist.linux-x86_64/wheel/pyphi/compute copying build/lib/pyphi/compute/network.py -> build/bdist.linux-x86_64/wheel/pyphi/compute copying build/lib/pyphi/compute/distance.py -> build/bdist.linux-x86_64/wheel/pyphi/compute copying build/lib/pyphi/compute/__init__.py -> build/bdist.linux-x86_64/wheel/pyphi/compute creating build/bdist.linux-x86_64/wheel/pyphi/models copying build/lib/pyphi/models/subsystem.py -> build/bdist.linux-x86_64/wheel/pyphi/models copying build/lib/pyphi/models/cuts.py -> build/bdist.linux-x86_64/wheel/pyphi/models copying build/lib/pyphi/models/cmp.py -> build/bdist.linux-x86_64/wheel/pyphi/models copying build/lib/pyphi/models/actual_causation.py -> build/bdist.linux-x86_64/wheel/pyphi/models copying build/lib/pyphi/models/mechanism.py -> build/bdist.linux-x86_64/wheel/pyphi/models copying build/lib/pyphi/models/fmt.py -> build/bdist.linux-x86_64/wheel/pyphi/models copying build/lib/pyphi/models/__init__.py -> build/bdist.linux-x86_64/wheel/pyphi/models copying build/lib/pyphi/registry.py -> build/bdist.linux-x86_64/wheel/pyphi copying build/lib/pyphi/labels.py -> build/bdist.linux-x86_64/wheel/pyphi copying build/lib/pyphi/db.py -> build/bdist.linux-x86_64/wheel/pyphi copying build/lib/pyphi/validate.py -> build/bdist.linux-x86_64/wheel/pyphi copying build/lib/pyphi/utils.py -> build/bdist.linux-x86_64/wheel/pyphi copying build/lib/pyphi/tpm.py -> build/bdist.linux-x86_64/wheel/pyphi copying build/lib/pyphi/timescale.py -> build/bdist.linux-x86_64/wheel/pyphi copying build/lib/pyphi/subsystem.py -> build/bdist.linux-x86_64/wheel/pyphi copying build/lib/pyphi/partition.py -> build/bdist.linux-x86_64/wheel/pyphi copying build/lib/pyphi/node.py -> build/bdist.linux-x86_64/wheel/pyphi copying build/lib/pyphi/network.py -> build/bdist.linux-x86_64/wheel/pyphi copying build/lib/pyphi/memory.py -> build/bdist.linux-x86_64/wheel/pyphi copying build/lib/pyphi/macro.py -> build/bdist.linux-x86_64/wheel/pyphi copying build/lib/pyphi/log.py -> build/bdist.linux-x86_64/wheel/pyphi copying build/lib/pyphi/jsonify.py -> build/bdist.linux-x86_64/wheel/pyphi copying build/lib/pyphi/exceptions.py -> build/bdist.linux-x86_64/wheel/pyphi copying build/lib/pyphi/examples.py -> build/bdist.linux-x86_64/wheel/pyphi copying build/lib/pyphi/distribution.py -> build/bdist.linux-x86_64/wheel/pyphi copying build/lib/pyphi/distance.py -> build/bdist.linux-x86_64/wheel/pyphi copying build/lib/pyphi/direction.py -> build/bdist.linux-x86_64/wheel/pyphi copying build/lib/pyphi/convert.py -> build/bdist.linux-x86_64/wheel/pyphi copying build/lib/pyphi/constants.py -> build/bdist.linux-x86_64/wheel/pyphi copying build/lib/pyphi/connectivity.py -> build/bdist.linux-x86_64/wheel/pyphi copying build/lib/pyphi/conf.py -> build/bdist.linux-x86_64/wheel/pyphi copying build/lib/pyphi/cache.py -> build/bdist.linux-x86_64/wheel/pyphi copying build/lib/pyphi/actual.py -> build/bdist.linux-x86_64/wheel/pyphi copying build/lib/pyphi/__init__.py -> build/bdist.linux-x86_64/wheel/pyphi copying build/lib/pyphi/__about__.py -> build/bdist.linux-x86_64/wheel/pyphi running install_egg_info Copying pyphi.egg-info to build/bdist.linux-x86_64/wheel/pyphi-1.2.1-py3.11.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/pyphi-1.2.1.dist-info/WHEEL creating '/builddir/build/BUILD/pyphi-1.2.1/.pyproject-builddir/pip-wheel-p7d7jh46/tmph522bx46/pyphi-1.2.1-py3-none-any.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'pyphi/__about__.py' adding 'pyphi/__init__.py' adding 'pyphi/actual.py' adding 'pyphi/cache.py' adding 'pyphi/conf.py' adding 'pyphi/connectivity.py' adding 'pyphi/constants.py' adding 'pyphi/convert.py' adding 'pyphi/db.py' adding 'pyphi/direction.py' adding 'pyphi/distance.py' adding 'pyphi/distribution.py' adding 'pyphi/examples.py' adding 'pyphi/exceptions.py' adding 'pyphi/jsonify.py' adding 'pyphi/labels.py' adding 'pyphi/log.py' adding 'pyphi/macro.py' adding 'pyphi/memory.py' adding 'pyphi/network.py' adding 'pyphi/node.py' adding 'pyphi/partition.py' adding 'pyphi/registry.py' adding 'pyphi/subsystem.py' adding 'pyphi/timescale.py' adding 'pyphi/tpm.py' adding 'pyphi/utils.py' adding 'pyphi/validate.py' adding 'pyphi/compute/__init__.py' adding 'pyphi/compute/distance.py' adding 'pyphi/compute/network.py' adding 'pyphi/compute/parallel.py' adding 'pyphi/compute/subsystem.py' adding 'pyphi/data/hamming_matrices/0.npy' adding 'pyphi/data/hamming_matrices/1.npy' adding 'pyphi/data/hamming_matrices/2.npy' adding 'pyphi/data/hamming_matrices/3.npy' adding 'pyphi/data/hamming_matrices/4.npy' adding 'pyphi/data/hamming_matrices/5.npy' adding 'pyphi/data/hamming_matrices/6.npy' adding 'pyphi/data/hamming_matrices/7.npy' adding 'pyphi/data/hamming_matrices/8.npy' adding 'pyphi/data/hamming_matrices/9.npy' adding 'pyphi/data/partition_lists/0.npy' adding 'pyphi/data/partition_lists/1.npy' adding 'pyphi/data/partition_lists/2.npy' adding 'pyphi/data/partition_lists/3.npy' adding 'pyphi/data/partition_lists/4.npy' adding 'pyphi/data/partition_lists/5.npy' adding 'pyphi/data/partition_lists/6.npy' adding 'pyphi/data/partition_lists/7.npy' adding 'pyphi/data/partition_lists/8.npy' adding 'pyphi/data/partition_lists/9.npy' adding 'pyphi/models/__init__.py' adding 'pyphi/models/actual_causation.py' adding 'pyphi/models/cmp.py' adding 'pyphi/models/cuts.py' adding 'pyphi/models/fmt.py' adding 'pyphi/models/mechanism.py' adding 'pyphi/models/subsystem.py' adding 'pyphi-1.2.1.dist-info/LICENSE.md' adding 'pyphi-1.2.1.dist-info/METADATA' adding 'pyphi-1.2.1.dist-info/WHEEL' adding 'pyphi-1.2.1.dist-info/top_level.txt' adding 'pyphi-1.2.1.dist-info/RECORD' removing build/bdist.linux-x86_64/wheel Building wheel for pyphi (pyproject.toml): finished with status 'done' Created wheel for pyphi: filename=pyphi-1.2.1-py3-none-any.whl size=618929 sha256=6976870b0facf953d868c4e57f4d5f8a00d83b95e707500197c78a82771c5a6c Stored in directory: /builddir/.cache/pip/wheels/70/eb/71/e4387c68bac1c6e3b9aa93b3527f93ee1d7feda9d35e1d177b Successfully built pyphi + make -C docs SPHINXBUILD=sphinx-build-3 html make: Entering directory '/builddir/build/BUILD/pyphi-1.2.1/docs' sphinx-build-3 -b html -d _build/doctrees . _build/html Running Sphinx v5.3.0 Welcome to PyPhi! If you use PyPhi in your research, please cite the paper: Mayner WGP, Marshall W, Albantakis L, Findlay G, Marchman R, Tononi G. (2018). PyPhi: A toolbox for integrated information theory. PLOS Computational Biology 14(7): e1006343. https://doi.org/10.1371/journal.pcbi.1006343 Documentation is available online (or with the built-in `help()` function): https://pyphi.readthedocs.io To report issues, please use the issue tracker on the GitHub repository: https://github.com/wmayner/pyphi For general discussion, you are welcome to join the pyphi-users group: https://groups.google.com/forum/#!forum/pyphi-users To suppress this message, either: - Set `WELCOME_OFF: true` in your `pyphi_config.yml` file, or - Set the environment variable PYPHI_WELCOME_OFF to any value in your shell: export PYPHI_WELCOME_OFF='yes' making output directory... done building [mo]: targets for 0 po files that are out of date building [html]: targets for 45 source files that are out of date updating environment: [new config] 45 added, 0 changed, 0 removed reading sources... [ 2%] api/actual reading sources... [ 4%] api/cache reading sources... [ 6%] api/compute reading sources... [ 8%] api/compute.distance reading sources... [ 11%] api/compute.network reading sources... [ 13%] api/compute.parallel reading sources... [ 15%] api/compute.subsystem reading sources... [ 17%] api/conf reading sources... [ 20%] api/connectivity reading sources... [ 22%] api/constants reading sources... [ 24%] api/convert reading sources... [ 26%] api/direction reading sources... [ 28%] api/distance reading sources... [ 31%] api/distribution reading sources... [ 33%] api/examples reading sources... [ 35%] api/exceptions reading sources... [ 37%] api/jsonify reading sources... [ 40%] api/macro reading sources... [ 42%] api/models reading sources... [ 44%] api/models.actual_causation reading sources... [ 46%] api/models.cuts reading sources... [ 48%] api/models.mechanism reading sources... [ 51%] api/models.subsystem reading sources... [ 53%] api/network reading sources... [ 55%] api/node reading sources... [ 57%] api/partition reading sources... [ 60%] api/subsystem reading sources... [ 62%] api/timescale reading sources... [ 64%] api/tpm reading sources... [ 66%] api/utils reading sources... [ 68%] api/validate reading sources... [ 71%] caching reading sources... [ 73%] configuration reading sources... [ 75%] conventions reading sources... [ 77%] examples/2014paper reading sources... [ 80%] examples/actual_causation reading sources... [ 82%] examples/conditional_independence reading sources... [ 84%] examples/emergence reading sources... [ 86%] examples/index reading sources... [ 88%] examples/magic_cut reading sources... [ 91%] examples/residue reading sources... [ 93%] examples/xor reading sources... [ 95%] index reading sources... [ 97%] installation reading sources... [100%] macos_installation looking for now-outdated files... none found pickling environment... /builddir/build/BUILD/pyphi-1.2.1/pyphi/actual.py:docstring of pyphi.actual.Transition:67: WARNING: duplicate object description of pyphi.actual.Transition.cause_system, other instance in api/actual, use :noindex: for one of them /builddir/build/BUILD/pyphi-1.2.1/pyphi/macro.py:docstring of pyphi.macro.MacroNetwork.emergence:1: WARNING: duplicate object description of pyphi.macro.MacroNetwork.emergence, other instance in api/macro, use :noindex: for one of them /builddir/build/BUILD/pyphi-1.2.1/pyphi/models/cuts.py:docstring of pyphi.models.cuts.Cut.from_nodes:1: WARNING: duplicate object description of pyphi.models.cuts.Cut.from_nodes, other instance in api/models.cuts, use :noindex: for one of them /builddir/build/BUILD/pyphi-1.2.1/pyphi/models/cuts.py:docstring of pyphi.models.cuts.Cut.to_nodes:1: WARNING: duplicate object description of pyphi.models.cuts.Cut.to_nodes, other instance in api/models.cuts, use :noindex: for one of them done checking consistency... done preparing documents... done writing output... [ 2%] api/actual writing output... [ 4%] api/cache writing output... [ 6%] api/compute writing output... [ 8%] api/compute.distance writing output... [ 11%] api/compute.network writing output... [ 13%] api/compute.parallel writing output... [ 15%] api/compute.subsystem writing output... [ 17%] api/conf writing output... [ 20%] api/connectivity writing output... [ 22%] api/constants writing output... [ 24%] api/convert writing output... [ 26%] api/direction writing output... [ 28%] api/distance writing output... [ 31%] api/distribution writing output... [ 33%] api/examples writing output... [ 35%] api/exceptions writing output... [ 37%] api/jsonify writing output... [ 40%] api/macro writing output... [ 42%] api/models writing output... [ 44%] api/models.actual_causation writing output... [ 46%] api/models.cuts writing output... [ 48%] api/models.mechanism writing output... [ 51%] api/models.subsystem writing output... [ 53%] api/network writing output... [ 55%] api/node writing output... [ 57%] api/partition writing output... [ 60%] api/subsystem writing output... [ 62%] api/timescale writing output... [ 64%] api/tpm writing output... [ 66%] api/utils writing output... [ 68%] api/validate writing output... [ 71%] caching writing output... [ 73%] configuration writing output... [ 75%] conventions writing output... [ 77%] examples/2014paper writing output... [ 80%] examples/actual_causation writing output... [ 82%] examples/conditional_independence writing output... [ 84%] examples/emergence writing output... [ 86%] examples/index writing output... [ 88%] examples/magic_cut writing output... [ 91%] examples/residue writing output... [ 93%] examples/xor writing output... [ 95%] index writing output... [ 97%] installation writing output... [100%] macos_installation generating indices... /builddir/build/BUILD/pyphi-1.2.1/pyphi/actual.py:docstring of pyphi.actual.true_events:1: WARNING: more than one target found for cross-reference 'AcSystemIrreducibilityAnalysis': pyphi.models.AcSystemIrreducibilityAnalysis, pyphi.models.actual_causation.AcSystemIrreducibilityAnalysis /builddir/build/BUILD/pyphi-1.2.1/pyphi/actual.py:docstring of pyphi.actual.extrinsic_events:1: WARNING: more than one target found for cross-reference 'AcSystemIrreducibilityAnalysis': pyphi.models.AcSystemIrreducibilityAnalysis, pyphi.models.actual_causation.AcSystemIrreducibilityAnalysis /builddir/build/BUILD/pyphi-1.2.1/pyphi/subsystem.py:docstring of pyphi.subsystem.Subsystem:1: WARNING: more than one target found for cross-reference 'Cut': pyphi.models.Cut, pyphi.models.cuts.Cut genindex py-modindex done writing additional pages... search done copying images... [100%] _static/connectivity-matrix-example-network.png copying static files... done copying extra files... done dumping search index in English (code: en)... done dumping object inventory... done build succeeded, 7 warnings. The HTML pages are in _build/html. Build finished. The HTML pages are in _build/html. make: Leaving directory '/builddir/build/BUILD/pyphi-1.2.1/docs' + rm docs/_build/html/.doctrees docs/_build/html/.buildinfo -vf removed 'docs/_build/html/.buildinfo' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.Q0klgo + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/python-pyphi-1.2.1-6.fc39.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/python-pyphi-1.2.1-6.fc39.x86_64 ++ dirname /builddir/build/BUILDROOT/python-pyphi-1.2.1-6.fc39.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/python-pyphi-1.2.1-6.fc39.x86_64 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd pyphi-1.2.1 ++ xargs basename --multiple ++ sed -E 's/([^-]+)-([^-]+)-.+\.whl/\1==\2/' ++ ls /builddir/build/BUILD/pyphi-1.2.1/pyproject-wheeldir/pyphi-1.2.1-py3-none-any.whl + specifier=pyphi==1.2.1 + TMPDIR=/builddir/build/BUILD/pyphi-1.2.1/.pyproject-builddir + /usr/bin/python3 -m pip install --root /builddir/build/BUILDROOT/python-pyphi-1.2.1-6.fc39.x86_64 --prefix /usr --no-deps --disable-pip-version-check --progress-bar off --verbose --ignore-installed --no-warn-script-location --no-index --no-cache-dir --find-links /builddir/build/BUILD/pyphi-1.2.1/pyproject-wheeldir pyphi==1.2.1 Using pip 23.0 from /usr/lib/python3.11/site-packages/pip (python 3.11) Looking in links: /builddir/build/BUILD/pyphi-1.2.1/pyproject-wheeldir Processing ./pyproject-wheeldir/pyphi-1.2.1-py3-none-any.whl Installing collected packages: pyphi Successfully installed pyphi-1.2.1 + '[' -d /builddir/build/BUILDROOT/python-pyphi-1.2.1-6.fc39.x86_64/usr/bin ']' + rm -f /builddir/build/BUILD/python-pyphi-1.2.1-6.fc39.x86_64-pyproject-ghost-distinfo + site_dirs=() + '[' -d /builddir/build/BUILDROOT/python-pyphi-1.2.1-6.fc39.x86_64/usr/lib/python3.11/site-packages ']' + site_dirs+=("/usr/lib/python3.11/site-packages") + '[' /builddir/build/BUILDROOT/python-pyphi-1.2.1-6.fc39.x86_64/usr/lib64/python3.11/site-packages '!=' /builddir/build/BUILDROOT/python-pyphi-1.2.1-6.fc39.x86_64/usr/lib/python3.11/site-packages ']' + '[' -d /builddir/build/BUILDROOT/python-pyphi-1.2.1-6.fc39.x86_64/usr/lib64/python3.11/site-packages ']' + for site_dir in ${site_dirs[@]} + for distinfo in /builddir/build/BUILDROOT/python-pyphi-1.2.1-6.fc39.x86_64$site_dir/*.dist-info + echo '%ghost /usr/lib/python3.11/site-packages/pyphi-1.2.1.dist-info' + sed -i s/pip/rpm/ /builddir/build/BUILDROOT/python-pyphi-1.2.1-6.fc39.x86_64/usr/lib/python3.11/site-packages/pyphi-1.2.1.dist-info/INSTALLER + PYTHONPATH=/usr/lib/rpm/redhat + /usr/bin/python3 -B /usr/lib/rpm/redhat/pyproject_preprocess_record.py --buildroot /builddir/build/BUILDROOT/python-pyphi-1.2.1-6.fc39.x86_64 --record /builddir/build/BUILDROOT/python-pyphi-1.2.1-6.fc39.x86_64/usr/lib/python3.11/site-packages/pyphi-1.2.1.dist-info/RECORD --output /builddir/build/BUILD/python-pyphi-1.2.1-6.fc39.x86_64-pyproject-record + rm -fv /builddir/build/BUILDROOT/python-pyphi-1.2.1-6.fc39.x86_64/usr/lib/python3.11/site-packages/pyphi-1.2.1.dist-info/RECORD removed '/builddir/build/BUILDROOT/python-pyphi-1.2.1-6.fc39.x86_64/usr/lib/python3.11/site-packages/pyphi-1.2.1.dist-info/RECORD' + rm -fv /builddir/build/BUILDROOT/python-pyphi-1.2.1-6.fc39.x86_64/usr/lib/python3.11/site-packages/pyphi-1.2.1.dist-info/REQUESTED removed '/builddir/build/BUILDROOT/python-pyphi-1.2.1-6.fc39.x86_64/usr/lib/python3.11/site-packages/pyphi-1.2.1.dist-info/REQUESTED' ++ wc -l /builddir/build/BUILD/python-pyphi-1.2.1-6.fc39.x86_64-pyproject-ghost-distinfo ++ cut -f1 '-d ' + lines=1 + '[' 1 -ne 1 ']' + /usr/bin/python3 /usr/lib/rpm/redhat/pyproject_save_files.py --output-files /builddir/build/BUILD/python-pyphi-1.2.1-6.fc39.x86_64-pyproject-files --output-modules /builddir/build/BUILD/python-pyphi-1.2.1-6.fc39.x86_64-pyproject-modules --buildroot /builddir/build/BUILDROOT/python-pyphi-1.2.1-6.fc39.x86_64 --sitelib /usr/lib/python3.11/site-packages --sitearch /usr/lib64/python3.11/site-packages --python-version 3.11 --pyproject-record /builddir/build/BUILD/python-pyphi-1.2.1-6.fc39.x86_64-pyproject-record --prefix /usr pyphi + /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 1.2.1-6.fc39 --unique-debug-suffix -1.2.1-6.fc39.x86_64 --unique-debug-src-base python-pyphi-1.2.1-6.fc39.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/pyphi-1.2.1 find: 'debug': No such file or directory + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2 Bytecompiling .py files below /builddir/build/BUILDROOT/python-pyphi-1.2.1-6.fc39.x86_64/usr/lib/python3.11 using python3.11 + /usr/lib/rpm/redhat/brp-python-hardlink Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.zFRIQP + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd pyphi-1.2.1 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + PATH=/builddir/build/BUILDROOT/python-pyphi-1.2.1-6.fc39.x86_64/usr/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin + PYTHONPATH=/builddir/build/BUILDROOT/python-pyphi-1.2.1-6.fc39.x86_64/usr/lib64/python3.11/site-packages:/builddir/build/BUILDROOT/python-pyphi-1.2.1-6.fc39.x86_64/usr/lib/python3.11/site-packages + PYTHONDONTWRITEBYTECODE=1 + PYTEST_ADDOPTS=' --ignore=/builddir/build/BUILD/pyphi-1.2.1/.pyproject-builddir' + PYTEST_XDIST_AUTO_NUM_WORKERS=2 + /usr/bin/pytest ============================= test session starts ============================== platform linux -- Python 3.11.2, pytest-7.2.1, pluggy-1.0.0 -- /usr/bin/python3 cachedir: .pytest_cache rootdir: /builddir/build/BUILD/pyphi-1.2.1, configfile: pytest.ini plugins: lazy-fixture-0.6.3 collecting ... collected 578 items docs/conventions.rst::conventions.rst PASSED [ 0%] docs/examples/2014paper.rst::2014paper.rst PASSED [ 0%] docs/examples/actual_causation.rst::actual_causation.rst PASSED [ 0%] docs/examples/conditional_independence.rst::conditional_independence.rst PASSED [ 0%] docs/examples/emergence.rst::emergence.rst PASSED [ 0%] docs/examples/index.rst::index.rst PASSED [ 1%] docs/examples/magic_cut.rst::magic_cut.rst PASSED [ 1%] docs/examples/residue.rst::residue.rst PASSED [ 1%] docs/examples/xor.rst::xor.rst PASSED [ 1%] pyphi/conf.py::pyphi.conf PASSED [ 1%] pyphi/conf.py::pyphi.conf.Config.override PASSED [ 1%] pyphi/convert.py::pyphi.convert.be2le_state_by_state PASSED [ 2%] pyphi/convert.py::pyphi.convert.be_index2state PASSED [ 2%] pyphi/convert.py::pyphi.convert.le_index2state PASSED [ 2%] pyphi/convert.py::pyphi.convert.reverse_bits PASSED [ 2%] pyphi/convert.py::pyphi.convert.state2be_index PASSED [ 2%] pyphi/convert.py::pyphi.convert.state2le_index PASSED [ 2%] pyphi/convert.py::pyphi.convert.state_by_node2state_by_state PASSED [ 3%] pyphi/convert.py::pyphi.convert.state_by_state2state_by_node PASSED [ 3%] pyphi/distance.py::pyphi.distance.MeasureRegistry SKIPPED (all tests skipped by +SKIP option) [ 3%] pyphi/distance.py::pyphi.distance._hamming_matrix PASSED [ 3%] pyphi/distribution.py::pyphi.distribution.repertoire_shape PASSED [ 3%] pyphi/labels.py::pyphi.labels.NodeLabels PASSED [ 3%] pyphi/macro.py::pyphi.macro.Blackbox.reindex PASSED [ 4%] pyphi/macro.py::pyphi.macro.CoarseGrain.macro_state PASSED [ 4%] pyphi/macro.py::pyphi.macro.CoarseGrain.reindex PASSED [ 4%] pyphi/macro.py::pyphi.macro._partitions_list PASSED [ 4%] pyphi/partition.py::pyphi.partition.PartitionRegistry SKIPPED (all tests skipped by +SKIP option) [ 4%] pyphi/partition.py::pyphi.partition.bipartition PASSED [ 5%] pyphi/partition.py::pyphi.partition.bipartition_indices PASSED [ 5%] pyphi/partition.py::pyphi.partition.directed_bipartition PASSED [ 5%] pyphi/partition.py::pyphi.partition.directed_bipartition_indices PASSED [ 5%] pyphi/partition.py::pyphi.partition.directed_bipartition_of_one PASSED [ 5%] pyphi/partition.py::pyphi.partition.directed_tripartition PASSED [ 5%] pyphi/partition.py::pyphi.partition.directed_tripartition_indices PASSED [ 6%] pyphi/partition.py::pyphi.partition.k_partitions PASSED [ 6%] pyphi/partition.py::pyphi.partition.mip_bipartitions PASSED [ 6%] pyphi/partition.py::pyphi.partition.partitions PASSED [ 6%] pyphi/utils.py::pyphi.utils.comb_indices PASSED [ 6%] pyphi/utils.py::pyphi.utils.powerset PASSED [ 6%] pyphi/models/cuts.py::pyphi.models.cuts.Cut.cut_matrix PASSED [ 7%] pyphi/models/fmt.py::pyphi.models.fmt.box PASSED [ 7%] pyphi/models/fmt.py::pyphi.models.fmt.indent PASSED [ 7%] pyphi/models/fmt.py::pyphi.models.fmt.margin PASSED [ 7%] pyphi/models/fmt.py::pyphi.models.fmt.side_by_side PASSED [ 7%] test/test_actual.py::test_background_conditions[background_all_off-EFFECT-mechanism0-purview0-1] PASSED [ 7%] test/test_actual.py::test_background_conditions[background_all_off-CAUSE-mechanism1-purview1-1] PASSED [ 8%] test/test_actual.py::test_background_conditions[background_all_on-EFFECT-mechanism2-purview2-0] PASSED [ 8%] test/test_actual.py::test_background_conditions[background_all_on-CAUSE-mechanism3-purview3-0] PASSED [ 8%] test/test_actual.py::test_background_noised PASSED [ 8%] test/test_actual.py::test_background_3_node[before_state0-purview0-0.0] PASSED [ 8%] test/test_actual.py::test_background_3_node[before_state1-purview1-1.0] PASSED [ 8%] test/test_actual.py::test_potential_purviews PASSED [ 9%] test/test_actual.py::test_transition_initialization PASSED [ 9%] test/test_actual.py::test_purview_state PASSED [ 9%] test/test_actual.py::test_mechanism_state PASSED [ 9%] test/test_actual.py::test_mechanism_indices PASSED [ 9%] test/test_actual.py::test_purview_indices PASSED [ 10%] test/test_actual.py::test_system_dict PASSED [ 10%] test/test_actual.py::test_transition_len PASSED [ 10%] test/test_actual.py::test_transition_bool PASSED [ 10%] test/test_actual.py::test_transition_equal PASSED [ 10%] test/test_actual.py::test_transition_apply_cut PASSED [ 10%] test/test_actual.py::test_to_json PASSED [ 11%] test/test_actual.py::test_acria_ordering PASSED [ 11%] test/test_actual.py::test_acria_hash PASSED [ 11%] test/test_actual.py::test_acria_phi_alias PASSED [ 11%] test/test_actual.py::test_causal_link_ordering PASSED [ 11%] test/test_actual.py::test_account_irreducible_causes_and_effects PASSED [ 11%] test/test_actual.py::test_account_repr_and_str PASSED [ 12%] test/test_actual.py::test_account_addition PASSED [ 12%] test/test_actual.py::test_ac_sia_repr_and_str PASSED [ 12%] test/test_actual.py::test_ac_sia_ordering PASSED [ 12%] test/test_actual.py::test_repertoires[CAUSE-mechanism0-purview0-repertoire0] PASSED [ 12%] test/test_actual.py::test_repertoires[CAUSE-mechanism1-purview1-repertoire1] PASSED [ 12%] test/test_actual.py::test_repertoires[CAUSE-mechanism2-purview2-repertoire2] PASSED [ 13%] test/test_actual.py::test_repertoires[EFFECT-mechanism3-purview3-repertoire3] PASSED [ 13%] test/test_actual.py::test_repertoires[EFFECT-mechanism4-purview4-repertoire4] PASSED [ 13%] test/test_actual.py::test_repertoires[EFFECT-mechanism5-purview5-repertoire5] PASSED [ 13%] test/test_actual.py::test_invalid_repertoires PASSED [ 13%] test/test_actual.py::test_unconstrained_repertoires PASSED [ 14%] test/test_actual.py::test_probability[CAUSE-mechanism0-purview0-0.66666667] PASSED [ 14%] test/test_actual.py::test_probability[CAUSE-mechanism1-purview1-0.66666667] PASSED [ 14%] test/test_actual.py::test_probability[CAUSE-mechanism2-purview2-0.3333333] PASSED [ 14%] test/test_actual.py::test_probability[EFFECT-mechanism3-purview3-1] PASSED [ 14%] test/test_actual.py::test_probability[EFFECT-mechanism4-purview4-1] PASSED [ 14%] test/test_actual.py::test_probability[EFFECT-mechanism5-purview5-1] PASSED [ 15%] test/test_actual.py::test_unconstrained_probability PASSED [ 15%] test/test_actual.py::test_cause_ratio[mechanism0-purview0-0.41504] PASSED [ 15%] test/test_actual.py::test_cause_ratio[mechanism1-purview1-0.41504] PASSED [ 15%] test/test_actual.py::test_cause_ratio[mechanism2-purview2-0.41504] PASSED [ 15%] test/test_actual.py::test_effect_ratio[mechanism0-purview0-0.41504] PASSED [ 15%] test/test_actual.py::test_effect_ratio[mechanism1-purview1-0.41504] PASSED [ 16%] test/test_actual.py::test_effect_ratio[mechanism2-purview2-0.41504] PASSED [ 16%] test/test_actual.py::test_ac_ex1_transition PASSED [ 16%] test/test_actual.py::test_actual_cut_indices PASSED [ 16%] test/test_actual.py::test_actual_apply_cut PASSED [ 16%] test/test_actual.py::test_actual_cut_matrix PASSED [ 16%] test/test_actual.py::test_get_actual_cuts[BIDIRECTIONAL-answer0] PASSED [ 17%] test/test_actual.py::test_get_actual_cuts[CAUSE-answer1] PASSED [ 17%] test/test_actual.py::test_get_actual_cuts[EFFECT-answer2] PASSED [ 17%] test/test_actual.py::test_sia PASSED [ 17%] test/test_actual.py::test_null_ac_sia PASSED [ 17%] test/test_actual.py::test_prevention PASSED [ 17%] test/test_actual.py::test_causal_nexus PASSED [ 18%] test/test_actual.py::test_true_events PASSED [ 18%] test/test_actual.py::test_true_ces PASSED [ 18%] test/test_actual.py::test_extrinsic_events PASSED [ 18%] test/test_big_phi.py::test_sia_cache_key_includes_config_dependencies PASSED [ 18%] test/test_big_phi.py::test_clear_subsystem_caches_after_computing_sia_config_option PASSED [ 19%] test/test_big_phi.py::test_conceptual_info PASSED [ 19%] test/test_big_phi.py::test_sia_empty_subsystem PASSED [ 19%] test/test_big_phi.py::test_sia_disconnected_network PASSED [ 19%] test/test_big_phi.py::test_sia_wrappers PASSED [ 19%] test/test_big_phi.py::test_sia_single_micro_node_selfloops_have_phi PASSED [ 19%] test/test_big_phi.py::test_sia_single_micro_node_selfloops_dont_have_phi PASSED [ 20%] test/test_big_phi.py::test_sia_single_micro_nodes_without_selfloops_dont_have_phi PASSED [ 20%] test/test_big_phi.py::test_find_sia_sequential_standard_example PASSED [ 20%] test/test_big_phi.py::test_find_sia_parallel_standard_example PASSED [ 20%] test/test_big_phi.py::test_find_sia_sequential_noised_example PASSED [ 20%] test/test_big_phi.py::test_find_sia_parallel_noised_example PASSED [ 20%] test/test_big_phi.py::test_find_sia_parallel_micro PASSED [ 21%] test/test_big_phi.py::test_find_sia_sequential_micro PASSED [ 21%] test/test_big_phi.py::test_possible_complexes PASSED [ 21%] test/test_big_phi.py::test_complexes_standard PASSED [ 21%] test/test_big_phi.py::test_all_complexes_standard PASSED [ 21%] test/test_big_phi.py::test_all_complexes_parallelization PASSED [ 21%] test/test_big_phi.py::test_sia_complete_graph_standard_example PASSED [ 22%] test/test_big_phi.py::test_sia_complete_graph_s_noised PASSED [ 22%] test/test_big_phi.py::test_sia_complete_graph_big_subsys_all SKIPPED (need --slow option to run) [ 22%] test/test_big_phi.py::test_sia_complete_graph_rule152_s SKIPPED (need --slow option to run) [ 22%] test/test_big_phi.py::test_sia_big_network SKIPPED (need --slow option to run) [ 22%] test/test_big_phi.py::test_sia_big_network_0_thru_3 PASSED [ 23%] test/test_big_phi.py::test_sia_rule152 SKIPPED (need --slow option to run) [ 23%] test/test_big_phi.py::test_rule152_complexes_no_caching SKIPPED (need --veryslow option to run) [ 23%] test/test_big_phi.py::test_sia_macro PASSED [ 23%] test/test_big_phi.py::test_sia_bipartitions PASSED [ 23%] test/test_big_phi.py::test_system_cut_styles PASSED [ 23%] test/test_cache.py::test_cache PASSED [ 24%] test/test_cache.py::test_cache_decorator PASSED [ 24%] test/test_cache.py::test_cache_key_generation PASSED [ 24%] test/test_cache.py::test_cache_repertoires_config_option PASSED [ 24%] test/test_cache.py::test_redis_singleton_connection SKIPPED (requires a running Redis server) [ 24%] test/test_cache.py::test_redis_cache_info SKIPPED (requires a running Redis server) [ 24%] test/test_cache.py::test_use_redis_mice_cache SKIPPED (requires a running Redis server) [ 25%] test/test_cache.py::test_redis_cache_sharing_between_processes SKIPPED (requires a running Redis server) [ 25%] test/test_cache.py::test_use_dict_mice_cache PASSED [ 25%] test/test_cache.py::test_mice_cache_keys PASSED [ 25%] test/test_cache.py::test_mice_cache[True] SKIPPED (requires a running Redis server) [ 25%] test/test_cache.py::test_mice_cache[False] PASSED [ 25%] test/test_cache.py::test_do_not_cache_phi_zero_mice PASSED [ 26%] test/test_cache.py::test_only_cache_uncut_subsystem_mices[True] SKIPPED (requires a running Redis server) [ 26%] test/test_cache.py::test_only_cache_uncut_subsystem_mices[False] PASSED [ 26%] test/test_cache.py::test_split_mechanism_mice_is_not_reusable[True] SKIPPED (requires a running Redis server) [ 26%] test/test_cache.py::test_split_mechanism_mice_is_not_reusable[False] PASSED [ 26%] test/test_cache.py::test_cut_relevant_connections_mice_is_not_reusable[True] SKIPPED (requires a running Redis server) [ 26%] test/test_cache.py::test_cut_relevant_connections_mice_is_not_reusable[False] PASSED [ 27%] test/test_cache.py::test_inherited_mice_cache_keeps_unaffected_mice[True] SKIPPED (requires a running Redis server) [ 27%] test/test_cache.py::test_inherited_mice_cache_keeps_unaffected_mice[False] PASSED [ 27%] test/test_cache.py::test_inherited_cache_must_come_from_uncut_subsystem[True] SKIPPED (requires a running Redis server) [ 27%] test/test_cache.py::test_inherited_cache_must_come_from_uncut_subsystem[False] PASSED [ 27%] test/test_cache.py::test_mice_cache_respects_cache_memory_limits PASSED [ 28%] test/test_cache.py::test_purview_cache PASSED [ 28%] test/test_cache.py::test_only_cache_purviews_if_configured PASSED [ 28%] test/test_ces.py::test_ces_distance_uses_simple_vs_emd PASSED [ 28%] test/test_ces.py::test_ces_distance_switches_to_small_phi_difference PASSED [ 28%] test/test_ces.py::test_parallel_and_sequential_ces_are_equal PASSED [ 28%] test/test_ces.py::test_ces_concepts_share_the_same_subsystem[False] PASSED [ 29%] test/test_ces.py::test_ces_concepts_share_the_same_subsystem[True] PASSED [ 29%] test/test_concept_style_cuts.py::test_cut_indices PASSED [ 29%] test/test_concept_style_cuts.py::test_apply_cut PASSED [ 29%] test/test_concept_style_cuts.py::test_cut_matrix PASSED [ 29%] test/test_concept_style_cuts.py::test_splits_mechanism PASSED [ 29%] test/test_concept_style_cuts.py::test_all_cut_mechanisms PASSED [ 30%] test/test_concept_style_cuts.py::test_concept_style_cuts PASSED [ 30%] test/test_concept_style_cuts.py::test_kcut_equality PASSED [ 30%] test/test_concept_style_cuts.py::test_system_accessors PASSED [ 30%] test/test_concept_style_cuts.py::test_sia_concept_style_ordering PASSED [ 30%] test/test_concept_style_cuts.py::test_sia_concept_style PASSED [ 30%] test/test_concept_style_cuts.py::test_unpickle PASSED [ 31%] test/test_concept_style_cuts.py::test_concept_style_phi PASSED [ 31%] test/test_config.py::test_iter PASSED [ 31%] test/test_config.py::test_load_dict PASSED [ 31%] test/test_config.py::test_snapshot PASSED [ 31%] test/test_config.py::test_load_file PASSED [ 32%] test/test_config.py::test_str PASSED [ 32%] test/test_config.py::test_override PASSED [ 32%] test/test_config.py::test_override_cleans_up_after_exception PASSED [ 32%] test/test_config.py::test_override_is_a_context_manager PASSED [ 32%] test/test_config.py::test_option_descriptor PASSED [ 32%] test/test_config.py::test_defaults PASSED [ 33%] test/test_config.py::test_only_set_public__attributes_that_are_options PASSED [ 33%] test/test_config.py::test_can_set_private_attributes PASSED [ 33%] test/test_config.py::test_on_change PASSED [ 33%] test/test_config.py::test_reconfigure_logging_on_change PASSED [ 33%] test/test_config.py::test_reconfigure_precision_on_change PASSED [ 33%] test/test_config.py::test_reconfigure_joblib_on_change PASSED [ 34%] test/test_config.py::test_config_validation[SYSTEM_CUTS-valid0-invalid0] PASSED [ 34%] test/test_config.py::test_config_validation[REPR_VERBOSITY-valid1-invalid1] PASSED [ 34%] test/test_connectivity.py::test_get_inputs_from_cm PASSED [ 34%] test/test_connectivity.py::test_get_outputs_from_cm PASSED [ 34%] test/test_connectivity.py::test_causally_significant_nodes PASSED [ 34%] test/test_connectivity.py::test_relevant_connections PASSED [ 35%] test/test_connectivity.py::test_block_cm PASSED [ 35%] test/test_connectivity.py::test_block_reducible PASSED [ 35%] test/test_connectivity.py::test_is_strong PASSED [ 35%] test/test_connectivity.py::test_is_full PASSED [ 35%] test/test_connectivity.py::test_apply_boundary_conditions PASSED [ 35%] test/test_convert.py::test_le_index2state PASSED [ 36%] test/test_convert.py::test_be_index2state PASSED [ 36%] test/test_convert.py::test_to_multidimensional PASSED [ 36%] test/test_convert.py::test_to_2dimensional PASSED [ 36%] test/test_convert.py::test_state_by_state2state_by_node PASSED [ 36%] test/test_convert.py::test_state_by_node2state_by_state PASSED [ 37%] test/test_convert.py::test_nondet_state_by_node2state_by_state PASSED [ 37%] test/test_convert.py::test_nondet_state_by_state2state_by_node PASSED [ 37%] test/test_convert.py::test_2_d_state_by_node2state_by_state PASSED [ 37%] test/test_convert.py::test_n_d_state_by_node2state_by_state PASSED [ 37%] test/test_direction.py::test_direction_order PASSED [ 37%] test/test_direction.py::test_direction_json[CAUSE-json_dict0] PASSED [ 38%] test/test_direction.py::test_direction_json[EFFECT-json_dict1] PASSED [ 38%] test/test_direction.py::test_direction_json[BIDIRECTIONAL-json_dict2] PASSED [ 38%] test/test_direction.py::test_direction_str PASSED [ 38%] test/test_distance.py::test_hamming_matrix PASSED [ 38%] test/test_distance.py::test_large_hamming_matrix PASSED [ 38%] test/test_distance.py::test_emd_same_distributions PASSED [ 39%] test/test_distance.py::test_emd_validates_distribution_shapes PASSED [ 39%] test/test_distance.py::test_l1_distance PASSED [ 39%] test/test_distance.py::test_entropy_difference PASSED [ 39%] test/test_distance.py::test_kld PASSED [ 39%] test/test_distance.py::test_psq2 PASSED [ 39%] test/test_distance.py::test_mp2q PASSED [ 40%] test/test_distance.py::test_klm PASSED [ 40%] test/test_distance.py::test_default_measures PASSED [ 40%] test/test_distance.py::test_default_asymmetric_measures PASSED [ 40%] test/test_distance.py::test_system_repertoire_distance_must_be_symmetric PASSED [ 40%] test/test_distance.py::test_suppress_np_warnings PASSED [ 41%] test/test_distribution.py::test_normalize PASSED [ 41%] test/test_distribution.py::test_uniform_distribution PASSED [ 41%] test/test_distribution.py::test_purview_max_entropy_distribution PASSED [ 41%] test/test_distribution.py::test_marginal_zero PASSED [ 41%] test/test_distribution.py::test_marginal PASSED [ 41%] test/test_distribution.py::test_independent PASSED [ 42%] test/test_distribution.py::test_purview_size PASSED [ 42%] test/test_distribution.py::test_purview PASSED [ 42%] test/test_distribution.py::test_repertoire_shape PASSED [ 42%] test/test_distribution.py::test_flatten PASSED [ 42%] test/test_json.py::test_jsonify_native PASSED [ 42%] test/test_json.py::test_jsonify_numpy PASSED [ 43%] test/test_json.py::test_json_deserialization PASSED [ 43%] test/test_json.py::test_json_deserialization_non_pyphi_clasess PASSED [ 43%] test/test_json.py::test_deserialization_memoizes_duplicate_objects PASSED [ 43%] test/test_json.py::test_load PASSED [ 43%] test/test_json.py::test_network_from_json PASSED [ 43%] test/test_json.py::test_version_check_during_deserialization PASSED [ 44%] test/test_labels.py::test_defaults PASSED [ 44%] test/test_labels.py::test_labels2indices PASSED [ 44%] test/test_labels.py::test_indices2labels PASSED [ 44%] test/test_labels.py::test_coerce_to_indices PASSED [ 44%] test/test_labels.py::test_iterable PASSED [ 44%] test/test_labels.py::test_len PASSED [ 45%] test/test_labels.py::test_contains PASSED [ 45%] test/test_labels.py::test_instantiation_from_other_node_labels_object PASSED [ 45%] test/test_macro.py::test_all_partitions PASSED [ 45%] test/test_macro.py::test_all_groupings PASSED [ 45%] test/test_macro.py::test_all_coarse_grains PASSED [ 46%] test/test_macro.py::test_all_coarse_grains_for_blackbox PASSED [ 46%] test/test_macro.py::test_all_blackboxes PASSED [ 46%] test/test_macro.py::test_make_mapping PASSED [ 46%] test/test_macro.py::test_make_macro_tpm PASSED [ 46%] test/test_macro.py::test_make_macro_tpm_conditional_independence_check PASSED [ 46%] test/test_macro.py::test_macro_tpm_sbs PASSED [ 47%] test/test_macro.py::test_coarse_grain_indices PASSED [ 47%] test/test_macro.py::test_coarse_grain_state PASSED [ 47%] test/test_macro.py::test_coarse_grain_len PASSED [ 47%] test/test_macro.py::test_blackbox_indices PASSED [ 47%] test/test_macro.py::test_blackbox_state PASSED [ 47%] test/test_macro.py::test_blackbox_same_box PASSED [ 48%] test/test_macro.py::test_blackbox_hidden_from PASSED [ 48%] test/test_macro.py::test_blackbox_outputs_of PASSED [ 48%] test/test_macro.py::test_blackbox_len PASSED [ 48%] test/test_macro.py::test_rebuild_system_tpm PASSED [ 48%] test/test_macro.py::test_remove_singleton_dimensions PASSED [ 48%] test/test_macro.py::test_pack_attrs PASSED [ 49%] test/test_macro.py::test_apply_attrs PASSED [ 49%] test/test_macro_blackbox.py::test_basic_nor_or SKIPPED (need --veryslow option to run) [ 49%] test/test_macro_blackbox.py::test_xor_propogation_delay SKIPPED (need --veryslow option to run) [ 49%] test/test_macro_blackbox.py::test_soup XFAIL [ 49%] test/test_macro_blackbox.py::test_coarsegrain_spatial_degenerate SKIPPED (need --slow option to run) [ 50%] test/test_macro_blackbox.py::test_degenerate PASSED [ 50%] test/test_macro_blackbox.py::test_basic_propagation_delay PASSED [ 50%] test/test_macro_subsystem.py::test_cut_indices PASSED [ 50%] test/test_macro_subsystem.py::test_cut_mechanisms PASSED [ 50%] test/test_macro_subsystem.py::test_cut_node_labels_are_for_micro_elements PASSED [ 50%] test/test_macro_subsystem.py::test_concept_str_uses_macro_node_labels PASSED [ 51%] test/test_macro_subsystem.py::test_node_indices_can_be_none PASSED [ 51%] test/test_macro_subsystem.py::test_pass_node_indices_as_a_range PASSED [ 51%] test/test_macro_subsystem.py::test_node_labels PASSED [ 51%] test/test_macro_subsystem.py::test_macro_subsystem PASSED [ 51%] test/test_macro_subsystem.py::test_macro_cut_subsystem PASSED [ 51%] test/test_macro_subsystem.py::test_sparse_blackbox PASSED [ 52%] test/test_macro_subsystem.py::test_dense_blackbox PASSED [ 52%] test/test_macro_subsystem.py::test_cycle_blackbox PASSED [ 52%] test/test_macro_subsystem.py::test_run_tpm PASSED [ 52%] test/test_macro_subsystem.py::test_macro_cut_is_for_micro_indices PASSED [ 52%] test/test_macro_subsystem.py::test_subsystem_equality PASSED [ 52%] test/test_macro_subsystem.py::test_blackbox PASSED [ 53%] test/test_macro_subsystem.py::test_blackbox_external PASSED [ 53%] test/test_macro_subsystem.py::test_coarse_grain PASSED [ 53%] test/test_macro_subsystem.py::test_blackbox_and_coarse_grain XFAIL [ 53%] test/test_macro_subsystem.py::test_blackbox_and_coarse_grain_external PASSED [ 53%] test/test_macro_subsystem.py::test_blackbox_emergence SKIPPED (need --veryslow option to run) [ 53%] test/test_macro_subsystem.py::test_macro2micro PASSED [ 54%] test/test_macro_subsystem.py::test_blackbox_partial_noise PASSED [ 54%] test/test_macro_subsystem.py::test_blackbox_timescale XFAIL [ 54%] test/test_models.py::test_phi_mechanism_ordering PASSED [ 54%] test/test_models.py::test_sametype_decorator PASSED [ 54%] test/test_models.py::test_numpy_aware_eq_noniterable PASSED [ 55%] test/test_models.py::test_numpy_aware_eq_nparray PASSED [ 55%] test/test_models.py::test_numpy_aware_eq_tuple_nparrays PASSED [ 55%] test/test_models.py::test_numpy_aware_eq_identical PASSED [ 55%] test/test_models.py::test_general_eq_different_attributes PASSED [ 55%] test/test_models.py::test_general_eq_phi_precision_comparison_true PASSED [ 55%] test/test_models.py::test_general_eq_phi_precision_comparison_false PASSED [ 56%] test/test_models.py::test_general_eq_different_mechanism_order PASSED [ 56%] test/test_models.py::test_general_eq_different_purview_order PASSED [ 56%] test/test_models.py::test_general_eq_different_mechanism_and_purview_order PASSED [ 56%] test/test_models.py::test_general_eq_purview_mechanism_none PASSED [ 56%] test/test_models.py::test_general_eq_attribute_missing PASSED [ 56%] test/test_models.py::test_cut_equality PASSED [ 57%] test/test_models.py::test_cut_splits_mechanism PASSED [ 57%] test/test_models.py::test_cut_splits_connections PASSED [ 57%] test/test_models.py::test_cut_all_cut_mechanisms PASSED [ 57%] test/test_models.py::test_cut_matrix PASSED [ 57%] test/test_models.py::test_cut_indices PASSED [ 57%] test/test_models.py::test_apply_cut PASSED [ 58%] test/test_models.py::test_cut_is_null PASSED [ 58%] test/test_models.py::test_null_cut PASSED [ 58%] test/test_models.py::test_null_cut_str PASSED [ 58%] test/test_models.py::test_null_cut_equality PASSED [ 58%] test/test_models.py::test_cuts_can_have_node_labels PASSED [ 58%] test/test_models.py::test_ria_ordering_and_equality PASSED [ 59%] test/test_models.py::test_null_ria PASSED [ 59%] test/test_models.py::test_ria_repr_str PASSED [ 59%] test/test_models.py::test_mice_ordering_by_phi PASSED [ 59%] test/test_models.py::test_mice_odering_by_mechanism PASSED [ 59%] test/test_models.py::test_mice_ordering_by_purview PASSED [ 60%] test/test_models.py::test_mice_equality PASSED [ 60%] test/test_models.py::test_mice_repr_str PASSED [ 60%] test/test_models.py::test_relevant_connections PASSED [ 60%] test/test_models.py::test_damaged PASSED [ 60%] test/test_models.py::test_mic_raises_wrong_direction PASSED [ 60%] test/test_models.py::test_mie_raises_wrong_direction PASSED [ 61%] test/test_models.py::test_concept_ordering PASSED [ 61%] test/test_models.py::test_concept_ordering_by_mechanism PASSED [ 61%] test/test_models.py::test_concept_equality PASSED [ 61%] test/test_models.py::test_concept_equality_phi PASSED [ 61%] test/test_models.py::test_concept_equality_cause_purview_nodes PASSED [ 61%] test/test_models.py::test_concept_equality_effect_purview_nodes PASSED [ 62%] test/test_models.py::test_concept_equality_repertoires PASSED [ 62%] test/test_models.py::test_concept_equality_network PASSED [ 62%] test/test_models.py::test_concept_equality_one_subsystem_is_subset_of_another PASSED [ 62%] test/test_models.py::test_concept_repr_str PASSED [ 62%] test/test_models.py::test_concept_hashing PASSED [ 62%] test/test_models.py::test_concept_hashing_one_subsystem_is_subset_of_another PASSED [ 63%] test/test_models.py::test_concept_emd_eq PASSED [ 63%] test/test_models.py::test_ces_is_still_a_tuple PASSED [ 63%] test/test_models.py::test_ces_repr_str PASSED [ 63%] test/test_models.py::test_ces_are_always_normalized PASSED [ 63%] test/test_models.py::test_ces_labeled_mechanisms PASSED [ 64%] test/test_models.py::test_ces_ordering PASSED [ 64%] test/test_models.py::test_sia_ordering PASSED [ 64%] test/test_models.py::test_sia_ordering_by_subsystem_size PASSED [ 64%] test/test_models.py::test_sia_equality PASSED [ 64%] test/test_models.py::test_sia_repr_str PASSED [ 64%] test/test_models.py::test_indent PASSED [ 65%] test/test_models.py::test_make_reprs_uses___repr__ PASSED [ 65%] test/test_models.py::test_make_reprs_calls_out_to_string PASSED [ 65%] test/test_models.py::test_bipartition_properties PASSED [ 65%] test/test_models.py::test_bipartition_str PASSED [ 65%] test/test_models.py::test_tripartion_properties PASSED [ 65%] test/test_models.py::test_tripartion_str PASSED [ 66%] test/test_models.py::test_partition_normalize PASSED [ 66%] test/test_models.py::test_partition_normalize_preserves_labels PASSED [ 66%] test/test_models.py::test_partition_eq_hash PASSED [ 66%] test/test_network.py::test_network_init_validation PASSED [ 66%] test/test_network.py::test_network_creates_fully_connected_cm_by_default PASSED [ 66%] test/test_network.py::test_potential_purviews PASSED [ 67%] test/test_network.py::test_node_labels PASSED [ 67%] test/test_network.py::test_num_states PASSED [ 67%] test/test_network.py::test_repr PASSED [ 67%] test/test_network.py::test_str PASSED [ 67%] test/test_network.py::test_len PASSED [ 67%] test/test_network.py::test_size PASSED [ 68%] test/test_node.py::test_node_init_tpm PASSED [ 68%] test/test_node.py::test_node_init_inputs PASSED [ 68%] test/test_node.py::test_node_eq PASSED [ 68%] test/test_node.py::test_node_neq_by_index PASSED [ 68%] test/test_node.py::test_node_neq_by_state PASSED [ 69%] test/test_node.py::test_repr PASSED [ 69%] test/test_node.py::test_str PASSED [ 69%] test/test_node.py::test_expand_tpm PASSED [ 69%] test/test_node.py::test_generate_nodes PASSED [ 69%] test/test_node.py::test_generate_nodes_default_labels PASSED [ 69%] test/test_parallel.py::test_num_processes PASSED [ 70%] test/test_parallel.py::test_map_square PASSED [ 70%] test/test_parallel.py::test_materialize_list_only_when_needed PASSED [ 70%] test/test_parallel.py::test_parallel_exception_handling PASSED [ 70%] test/test_parallel.py::test_config_persists_through_paralellization PASSED [ 70%] test/test_partition.py::test_partitions PASSED [ 70%] test/test_partition.py::test_directed_bipartition PASSED [ 71%] test/test_partition.py::test_directed_tripartition_indices PASSED [ 71%] test/test_partition.py::test_k_partition PASSED [ 71%] test/test_partition.py::test_mip_bipartitions PASSED [ 71%] test/test_partition.py::test_wedge_partitions PASSED [ 71%] test/test_partition.py::test_partitioned_repertoire_with_tripartition PASSED [ 71%] test/test_partition.py::test_tripartitions_choses_smallest_purview PASSED [ 72%] test/test_partition.py::test_all_partitions PASSED [ 72%] test/test_partition.py::test_partition_types PASSED [ 72%] test/test_registry.py::test_registry PASSED [ 72%] test/test_subsystem.py::test_subsystem_validation PASSED [ 72%] test/test_subsystem.py::test_validate_cut_nodes_equal_subsystem_nodes PASSED [ 73%] test/test_subsystem.py::test_empty_init PASSED [ 73%] test/test_subsystem.py::test_default_nodes PASSED [ 73%] test/test_subsystem.py::test_eq PASSED [ 73%] test/test_subsystem.py::test_cmp PASSED [ 73%] test/test_subsystem.py::test_len PASSED [ 73%] test/test_subsystem.py::test_size PASSED [ 74%] test/test_subsystem.py::test_hash PASSED [ 74%] test/test_subsystem.py::test_indices2nodes PASSED [ 74%] test/test_subsystem.py::test_indices2nodes_with_bad_indices PASSED [ 74%] test/test_subsystem.py::test_is_cut PASSED [ 74%] test/test_subsystem.py::test_proper_state PASSED [ 74%] test/test_subsystem.py::test_apply_cut PASSED [ 75%] test/test_subsystem.py::test_cut_indices PASSED [ 75%] test/test_subsystem.py::test_cut_mechanisms PASSED [ 75%] test/test_subsystem.py::test_cut_node_labels PASSED [ 75%] test/test_subsystem.py::test_specify_elements_with_labels PASSED [ 75%] test/test_subsystem.py::test_null_concept PASSED [ 75%] test/test_subsystem.py::test_concept_no_mechanism PASSED [ 76%] test/test_subsystem.py::test_concept_nonexistent PASSED [ 76%] test/test_subsystem_cause_effect_info.py::test_cause_info PASSED [ 76%] test/test_subsystem_cause_effect_info.py::test_effect_info PASSED [ 76%] test/test_subsystem_cause_effect_info.py::test_cause_effect_info PASSED [ 76%] test/test_subsystem_cause_effect_repertoire.py::test_cause_and_effect_repertoire[cause_repertoire-subsystem0-mechanism0-purview0-expected0] PASSED [ 76%] test/test_subsystem_cause_effect_repertoire.py::test_cause_and_effect_repertoire[cause_repertoire-subsystem1-mechanism1-purview1-expected1] PASSED [ 77%] test/test_subsystem_cause_effect_repertoire.py::test_cause_and_effect_repertoire[cause_repertoire-subsystem2-mechanism2-purview2-expected2] PASSED [ 77%] test/test_subsystem_cause_effect_repertoire.py::test_cause_and_effect_repertoire[cause_repertoire-subsystem3-mechanism3-purview3-expected3] PASSED [ 77%] test/test_subsystem_cause_effect_repertoire.py::test_cause_and_effect_repertoire[cause_repertoire-subsystem4-mechanism4-purview4-expected4] PASSED [ 77%] test/test_subsystem_cause_effect_repertoire.py::test_cause_and_effect_repertoire[cause_repertoire-subsystem5-mechanism5-purview5-expected5] PASSED [ 77%] test/test_subsystem_cause_effect_repertoire.py::test_cause_and_effect_repertoire[cause_repertoire-subsystem6-mechanism6-purview6-expected6] PASSED [ 78%] test/test_subsystem_cause_effect_repertoire.py::test_cause_and_effect_repertoire[cause_repertoire-subsystem7-mechanism7-purview7-expected7] PASSED [ 78%] test/test_subsystem_cause_effect_repertoire.py::test_cause_and_effect_repertoire[cause_repertoire-subsystem8-mechanism8-purview8-expected8] PASSED [ 78%] test/test_subsystem_cause_effect_repertoire.py::test_cause_and_effect_repertoire[cause_repertoire-subsystem9-mechanism9-purview9-expected9] PASSED [ 78%] test/test_subsystem_cause_effect_repertoire.py::test_cause_and_effect_repertoire[cause_repertoire-subsystem10-mechanism10-purview10-expected10] PASSED [ 78%] test/test_subsystem_cause_effect_repertoire.py::test_cause_and_effect_repertoire[cause_repertoire-subsystem11-mechanism11-purview11-expected11] PASSED [ 78%] test/test_subsystem_cause_effect_repertoire.py::test_cause_and_effect_repertoire[cause_repertoire-subsystem12-mechanism12-purview12-expected12] PASSED [ 79%] test/test_subsystem_cause_effect_repertoire.py::test_cause_and_effect_repertoire[cause_repertoire-subsystem13-mechanism13-purview13-expected13] PASSED [ 79%] test/test_subsystem_cause_effect_repertoire.py::test_cause_and_effect_repertoire[cause_repertoire-subsystem14-mechanism14-purview14-expected14] PASSED [ 79%] test/test_subsystem_cause_effect_repertoire.py::test_cause_and_effect_repertoire[cause_repertoire-subsystem15-mechanism15-purview15-expected15] PASSED [ 79%] test/test_subsystem_cause_effect_repertoire.py::test_cause_and_effect_repertoire[effect_repertoire-subsystem16-mechanism16-purview16-expected16] PASSED [ 79%] test/test_subsystem_cause_effect_repertoire.py::test_cause_and_effect_repertoire[effect_repertoire-subsystem17-mechanism17-purview17-expected17] PASSED [ 79%] test/test_subsystem_cause_effect_repertoire.py::test_cause_and_effect_repertoire[effect_repertoire-subsystem18-mechanism18-purview18-expected18] PASSED [ 80%] test/test_subsystem_cause_effect_repertoire.py::test_cause_and_effect_repertoire[effect_repertoire-subsystem19-mechanism19-purview19-expected19] PASSED [ 80%] test/test_subsystem_cause_effect_repertoire.py::test_cause_and_effect_repertoire[effect_repertoire-subsystem20-mechanism20-purview20-expected20] PASSED [ 80%] test/test_subsystem_cause_effect_repertoire.py::test_cause_and_effect_repertoire[effect_repertoire-subsystem21-mechanism21-purview21-expected21] PASSED [ 80%] test/test_subsystem_cause_effect_repertoire.py::test_cause_and_effect_repertoire[effect_repertoire-subsystem22-mechanism22-purview22-expected22] PASSED [ 80%] test/test_subsystem_cause_effect_repertoire.py::test_cause_and_effect_repertoire[effect_repertoire-subsystem23-mechanism23-purview23-expected23] PASSED [ 80%] test/test_subsystem_cause_effect_repertoire.py::test_cause_and_effect_repertoire[effect_repertoire-subsystem24-mechanism24-purview24-expected24] PASSED [ 81%] test/test_subsystem_cause_effect_repertoire.py::test_cause_and_effect_repertoire[effect_repertoire-subsystem25-mechanism25-purview25-expected25] PASSED [ 81%] test/test_subsystem_cause_effect_repertoire.py::test_cause_and_effect_repertoire[effect_repertoire-subsystem26-mechanism26-purview26-expected26] PASSED [ 81%] test/test_subsystem_cause_effect_repertoire.py::test_cause_and_effect_repertoire[effect_repertoire-subsystem27-mechanism27-purview27-expected27] PASSED [ 81%] test/test_subsystem_cause_effect_repertoire.py::test_cause_and_effect_repertoire[effect_repertoire-subsystem28-mechanism28-purview28-expected28] PASSED [ 81%] test/test_subsystem_cause_effect_repertoire.py::test_cause_and_effect_repertoire[effect_repertoire-subsystem29-mechanism29-purview29-expected29] PASSED [ 82%] test/test_subsystem_cause_effect_repertoire.py::test_cause_and_effect_repertoire[effect_repertoire-subsystem30-mechanism30-purview30-expected30] PASSED [ 82%] test/test_subsystem_cause_effect_repertoire.py::test_cause_and_effect_repertoire[effect_repertoire-subsystem31-mechanism31-purview31-expected31] PASSED [ 82%] test/test_subsystem_cause_effect_repertoire.py::test_cause_and_effect_repertoire[effect_repertoire-subsystem32-mechanism32-purview32-expected32] PASSED [ 82%] test/test_subsystem_cause_effect_repertoire.py::test_cause_and_effect_repertoire[effect_repertoire-subsystem33-mechanism33-purview33-expected33] PASSED [ 82%] test/test_subsystem_cause_effect_repertoire.py::test_cause_and_effect_repertoire[effect_repertoire-subsystem34-mechanism34-purview34-expected34] PASSED [ 82%] test/test_subsystem_cause_effect_repertoire.py::test_cause_and_effect_repertoire[effect_repertoire-subsystem35-mechanism35-purview35-expected35] PASSED [ 83%] test/test_subsystem_cause_effect_repertoire.py::test_repertoire_wrong_direction_error PASSED [ 83%] test/test_subsystem_expand.py::test_expand_cause_repertoire PASSED [ 83%] test/test_subsystem_expand.py::test_expand_effect_repertoire PASSED [ 83%] test/test_subsystem_expand.py::test_expand_repertoire_purview_must_be_subset_of_new_purview PASSED [ 83%] test/test_subsystem_phi_max.py::test_find_mice[None-CAUSE-expected0] PASSED [ 83%] test/test_subsystem_phi_max.py::test_find_mice[None-CAUSE-expected1] PASSED [ 84%] test/test_subsystem_phi_max.py::test_find_mice[None-CAUSE-expected2] PASSED [ 84%] test/test_subsystem_phi_max.py::test_find_mice[None-CAUSE-expected3] PASSED [ 84%] test/test_subsystem_phi_max.py::test_find_mice[None-EFFECT-expected4] PASSED [ 84%] test/test_subsystem_phi_max.py::test_find_mice[None-EFFECT-expected5] PASSED [ 84%] test/test_subsystem_phi_max.py::test_find_mice[None-EFFECT-expected6] PASSED [ 84%] test/test_subsystem_phi_max.py::test_find_mice[None-EFFECT-expected7] PASSED [ 85%] test/test_subsystem_phi_max.py::test_find_mice[cut8-CAUSE-expected8] PASSED [ 85%] test/test_subsystem_phi_max.py::test_find_mice[cut9-CAUSE-expected9] PASSED [ 85%] test/test_subsystem_phi_max.py::test_find_mice[cut10-CAUSE-expected10] PASSED [ 85%] test/test_subsystem_phi_max.py::test_find_mice[cut11-CAUSE-expected11] PASSED [ 85%] test/test_subsystem_phi_max.py::test_find_mice[cut12-EFFECT-expected12] PASSED [ 85%] test/test_subsystem_phi_max.py::test_find_mice[cut13-EFFECT-expected13] PASSED [ 86%] test/test_subsystem_phi_max.py::test_find_mice[cut14-EFFECT-expected14] PASSED [ 86%] test/test_subsystem_phi_max.py::test_find_mice[cut15-EFFECT-expected15] PASSED [ 86%] test/test_subsystem_phi_max.py::test_find_mice_empty PASSED [ 86%] test/test_subsystem_phi_max.py::test_mic_or_mie[None-CAUSE-expected0] PASSED [ 86%] test/test_subsystem_phi_max.py::test_mic_or_mie[None-CAUSE-expected1] PASSED [ 87%] test/test_subsystem_phi_max.py::test_mic_or_mie[None-CAUSE-expected2] PASSED [ 87%] test/test_subsystem_phi_max.py::test_mic_or_mie[None-CAUSE-expected3] PASSED [ 87%] test/test_subsystem_phi_max.py::test_mic_or_mie[None-EFFECT-expected4] PASSED [ 87%] test/test_subsystem_phi_max.py::test_mic_or_mie[None-EFFECT-expected5] PASSED [ 87%] test/test_subsystem_phi_max.py::test_mic_or_mie[None-EFFECT-expected6] PASSED [ 87%] test/test_subsystem_phi_max.py::test_mic_or_mie[None-EFFECT-expected7] PASSED [ 88%] test/test_subsystem_phi_max.py::test_mic_or_mie[cut8-CAUSE-expected8] PASSED [ 88%] test/test_subsystem_phi_max.py::test_mic_or_mie[cut9-CAUSE-expected9] PASSED [ 88%] test/test_subsystem_phi_max.py::test_mic_or_mie[cut10-CAUSE-expected10] PASSED [ 88%] test/test_subsystem_phi_max.py::test_mic_or_mie[cut11-CAUSE-expected11] PASSED [ 88%] test/test_subsystem_phi_max.py::test_mic_or_mie[cut12-EFFECT-expected12] PASSED [ 88%] test/test_subsystem_phi_max.py::test_mic_or_mie[cut13-EFFECT-expected13] PASSED [ 89%] test/test_subsystem_phi_max.py::test_mic_or_mie[cut14-EFFECT-expected14] PASSED [ 89%] test/test_subsystem_phi_max.py::test_mic_or_mie[cut15-EFFECT-expected15] PASSED [ 89%] test/test_subsystem_phi_max.py::test_phi_max[None-mechanism0-0.25] PASSED [ 89%] test/test_subsystem_phi_max.py::test_phi_max[None-mechanism1-0.5] PASSED [ 89%] test/test_subsystem_phi_max.py::test_phi_max[None-mechanism2-0.333333] PASSED [ 89%] test/test_subsystem_phi_max.py::test_phi_max[None-mechanism3-0.5] PASSED [ 90%] test/test_subsystem_phi_max.py::test_phi_max[cut4-mechanism4-0.0] PASSED [ 90%] test/test_subsystem_phi_max.py::test_phi_max[cut5-mechanism5-0.5] PASSED [ 90%] test/test_subsystem_phi_max.py::test_phi_max[cut6-mechanism6-0.0] PASSED [ 90%] test/test_subsystem_phi_max.py::test_phi_max[cut7-mechanism7-0.0] PASSED [ 90%] test/test_subsystem_small_phi.py::test_find_mip[CAUSE-subsystem0-None-mechanism0-purview0-expected0] PASSED [ 91%] test/test_subsystem_small_phi.py::test_find_mip[CAUSE-subsystem1-cut1-mechanism1-purview1-expected1] PASSED [ 91%] test/test_subsystem_small_phi.py::test_find_mip[EFFECT-subsystem2-None-mechanism2-purview2-expected2] PASSED [ 91%] test/test_subsystem_small_phi.py::test_find_mip[EFFECT-subsystem3-cut3-mechanism3-purview3-expected3] PASSED [ 91%] test/test_subsystem_small_phi.py::test_find_mip[EFFECT-subsystem4-cut4-mechanism4-purview4-expected4] PASSED [ 91%] test/test_subsystem_small_phi.py::test_find_mip[EFFECT-subsystem5-cut5-mechanism5-purview5-expected5] PASSED [ 91%] test/test_subsystem_small_phi.py::test_find_mip[EFFECT-subsystem6-cut6-mechanism6-purview6-expected6] PASSED [ 92%] test/test_subsystem_small_phi.py::test_cause_mip PASSED [ 92%] test/test_subsystem_small_phi.py::test_effect_mip PASSED [ 92%] test/test_subsystem_small_phi.py::test_phi_cause_mip PASSED [ 92%] test/test_subsystem_small_phi.py::test_phi_cause_mip_reducible PASSED [ 92%] test/test_subsystem_small_phi.py::test_phi_effect_mip PASSED [ 92%] test/test_subsystem_small_phi.py::test_phi_effect_mip_reducible PASSED [ 93%] test/test_subsystem_small_phi.py::test_phi PASSED [ 93%] test/test_subsystem_unconstrained_repertoire.py::test_unconstrained_cause_repertoire_matlab_0 PASSED [ 93%] test/test_subsystem_unconstrained_repertoire.py::test_unconstrained_cause_repertoire_matlab_1 PASSED [ 93%] test/test_subsystem_unconstrained_repertoire.py::test_unconstrained_cause_repertoire_matlab_2 PASSED [ 93%] test/test_subsystem_unconstrained_repertoire.py::test_unconstrained_effect_repertoire_matlab_0 PASSED [ 93%] test/test_subsystem_unconstrained_repertoire.py::test_unconstrained_effect_repertoire_matlab_1 PASSED [ 94%] test/test_subsystem_unconstrained_repertoire.py::test_unconstrained_effect_repertoire_matlab_2 PASSED [ 94%] test/test_tpm.py::test_is_state_by_state PASSED [ 94%] test/test_tpm.py::test_expand_tpm PASSED [ 94%] test/test_tpm.py::test_marginalize_out PASSED [ 94%] test/test_tpm.py::test_infer_cm PASSED [ 94%] test/test_tpm.py::test_reconstitute_tpm PASSED [ 95%] test/test_utils.py::test_all_states PASSED [ 95%] test/test_utils.py::test_eq PASSED [ 95%] test/test_utils.py::test_combs_for_1D_input PASSED [ 95%] test/test_utils.py::test_combs_r_is_0 PASSED [ 95%] test/test_utils.py::test_comb_indices PASSED [ 96%] test/test_utils.py::test_powerset PASSED [ 96%] test/test_utils.py::test_powerset_takes_iterable PASSED [ 96%] test/test_utils.py::test_np_hashable PASSED [ 96%] test/test_utils.py::test_time_annotated PASSED [ 96%] test/test_validate.py::test_validate_direction PASSED [ 96%] test/test_validate.py::test_validate_tpm_wrong_shape PASSED [ 97%] test/test_validate.py::test_validate_tpm_nonbinary_nodes PASSED [ 97%] test/test_validate.py::test_validate_tpm_conditional_independence PASSED [ 97%] test/test_validate.py::test_validate_connectivity_matrix_valid PASSED [ 97%] test/test_validate.py::test_validate_connectivity_matrix_not_square PASSED [ 97%] test/test_validate.py::test_validate_connectivity_matrix_not_2D PASSED [ 97%] test/test_validate.py::test_validate_connectivity_matrix_not_binary PASSED [ 98%] test/test_validate.py::test_validate_network_wrong_cm_size PASSED [ 98%] test/test_validate.py::test_validate_is_network PASSED [ 98%] test/test_validate.py::test_validate_state_no_error_1 PASSED [ 98%] test/test_validate.py::test_validate_state_error PASSED [ 98%] test/test_validate.py::test_validate_state_no_error_2 PASSED [ 98%] test/test_validate.py::test_validate_node_labels PASSED [ 99%] test/test_validate.py::test_validate_time_scale PASSED [ 99%] test/test_validate.py::test_validate_coarse_grain PASSED [ 99%] test/test_validate.py::test_validate_blackbox PASSED [ 99%] test/test_validate.py::test_validate_partition PASSED [ 99%] test/test_validate.py::test_validate_blackbox_and_coarsegrain PASSED [100%] ============================= slowest 5 durations ============================== 14.83s call docs/examples/emergence.rst::emergence.rst 9.37s call docs/examples/2014paper.rst::2014paper.rst 4.83s call test/test_macro_blackbox.py::test_soup 4.56s call test/test_macro_blackbox.py::test_degenerate 2.23s call test/test_macro_subsystem.py::test_cut_mechanisms ================= 554 passed, 21 skipped, 3 xfailed in 53.58s ================== + RPM_EC=0 ++ jobs -p + exit 0 Processing files: python3-pyphi-1.2.1-6.fc39.noarch Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.OQTppI + umask 022 + cd /builddir/build/BUILD + cd pyphi-1.2.1 + DOCDIR=/builddir/build/BUILDROOT/python-pyphi-1.2.1-6.fc39.x86_64/usr/share/doc/python3-pyphi + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/python-pyphi-1.2.1-6.fc39.x86_64/usr/share/doc/python3-pyphi + cp -pr README.md /builddir/build/BUILDROOT/python-pyphi-1.2.1-6.fc39.x86_64/usr/share/doc/python3-pyphi + cp -pr CHANGELOG.md /builddir/build/BUILDROOT/python-pyphi-1.2.1-6.fc39.x86_64/usr/share/doc/python3-pyphi + cp -pr CACHING.rst /builddir/build/BUILDROOT/python-pyphi-1.2.1-6.fc39.x86_64/usr/share/doc/python3-pyphi + cp -pr redis.conf /builddir/build/BUILDROOT/python-pyphi-1.2.1-6.fc39.x86_64/usr/share/doc/python3-pyphi + RPM_EC=0 ++ jobs -p + exit 0 Provides: python-pyphi = 1.2.1-6.fc39 python3-pyphi = 1.2.1-6.fc39 python3.11-pyphi = 1.2.1-6.fc39 python3.11dist(pyphi) = 1.2.1 python3dist(pyphi) = 1.2.1 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: python(abi) = 3.11 python3.11dist(decorator) >= 4 python3.11dist(joblib) >= 0.8 python3.11dist(numpy) >= 1.11 python3.11dist(psutil) >= 2.1.1 python3.11dist(pyemd) >= 0.3 python3.11dist(pymongo) >= 2.7.1 python3.11dist(pyyaml) >= 3.13 python3.11dist(redis) >= 2.10.5 python3.11dist(scipy) >= 0.13.3 python3.11dist(tblib) >= 1.3.2 python3.11dist(tqdm) >= 4.20 Processing files: python-pyphi-doc-1.2.1-6.fc39.noarch Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.z0h0rX + umask 022 + cd /builddir/build/BUILD + cd pyphi-1.2.1 + DOCDIR=/builddir/build/BUILDROOT/python-pyphi-1.2.1-6.fc39.x86_64/usr/share/doc/python-pyphi-doc + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/python-pyphi-1.2.1-6.fc39.x86_64/usr/share/doc/python-pyphi-doc + cp -pr docs/_build/html/ /builddir/build/BUILDROOT/python-pyphi-1.2.1-6.fc39.x86_64/usr/share/doc/python-pyphi-doc + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.0WcoHt + umask 022 + cd /builddir/build/BUILD + cd pyphi-1.2.1 + LICENSEDIR=/builddir/build/BUILDROOT/python-pyphi-1.2.1-6.fc39.x86_64/usr/share/licenses/python-pyphi-doc + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/python-pyphi-1.2.1-6.fc39.x86_64/usr/share/licenses/python-pyphi-doc + cp -pr LICENSE.md /builddir/build/BUILDROOT/python-pyphi-1.2.1-6.fc39.x86_64/usr/share/licenses/python-pyphi-doc + RPM_EC=0 ++ jobs -p + exit 0 Provides: python-pyphi-doc = 1.2.1-6.fc39 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/python-pyphi-1.2.1-6.fc39.x86_64 Wrote: /builddir/build/SRPMS/python-pyphi-1.2.1-6.fc39.src.rpm Wrote: /builddir/build/RPMS/python-pyphi-doc-1.2.1-6.fc39.noarch.rpm Wrote: /builddir/build/RPMS/python3-pyphi-1.2.1-6.fc39.noarch.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.AA5Bm1 + umask 022 + cd /builddir/build/BUILD + cd pyphi-1.2.1 + /usr/bin/rm -rf /builddir/build/BUILDROOT/python-pyphi-1.2.1-6.fc39.x86_64 + RPM_EC=0 ++ jobs -p + exit 0 Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.EeyY06 + umask 022 + cd /builddir/build/BUILD + rm -rf pyphi-1.2.1 pyphi-1.2.1.gemspec + RPM_EC=0 ++ jobs -p + exit 0 Child return code was: 0