## START: Set by rpmautospec ## (rpmautospec version 0.2.6) %define autorelease(e:s:pb:) %{?-p:0.}%{lua: release_number = 8; base_release_number = tonumber(rpm.expand("%{?-b*}%{!?-b:1}")); print(release_number + base_release_number - 1); }%{?-e:.%{-e*}}%{?-s:.%{-s*}}%{?dist} ## END: Set by rpmautospec %global _description %{expand: Arbor is a high-performance library for Computational Neuroscience simulations. Some key features include: - Asynchronous spike exchange that overlaps compute and communication. - Efficient sampling of voltage and current on all back ends. - Efficient implementation of all features on GPU. - Reporting of memory and energy consumption (when available on platform). - An API for addition of new cell types, e.g. LIF and Poisson spike generators. - Validation tests against numeric/analytic models and NEURON. Documentation is available at https://arbor.readthedocs.io/en/latest/ } # Best to start with the serial version when debugging build failures %bcond_without mpich %bcond_without openmpi %bcond_without tests %global forgeurl https://github.com/arbor-sim/arbor Name: arbor Version: 0.5.2 Release: %autorelease Summary: Multi-compartment neural network simulation library %forgemeta URL: %forgeurl Source0: %forgesource # script to run examples Source1: https://raw.githubusercontent.com/arbor-sim/arbor/master/scripts/run_python_examples.sh Source2: https://raw.githubusercontent.com/arbor-sim/arbor/master/scripts/run_cpp_examples.sh License: BSD # This patch changes ext/CMakeLists.txt for automatically using tinyopt libraries by cmake command. #Patch1: arbor-tinyopt_cmake.patch # https://github.com/arbor-sim/arbor/pull/1899 Patch2: arbor-remove-checks-for-move-ctor-pr1899.patch # Extracted from: https://github.com/arbor-sim/arbor/pull/1625 # panda requires unique index # https://github.com/arbor-sim/arbor/pull/1625/commits/eff34806dbea822798a5fd7a9e7600af29d126ab Patch3: arbor-pandas-prevent-duplicate-index-pr1625.patch # Random123 does not support these ExcludeArch: mips64r2 mips32r2 s390 BuildRequires: cmake BuildRequires: make BuildRequires: gcc-c++ BuildRequires: git-core BuildRequires: gtest-devel BuildRequires: google-benchmark-devel BuildRequires: json-devel BuildRequires: libunwind-devel BuildRequires: pybind11-devel BuildRequires: python3-devel BuildRequires: python3-setuptools BuildRequires: Random123-devel BuildRequires: tclap-devel Provides: python3-arbor = %{version}-%{release} # For validation, but we don't have these BRs # BuildRequires: julia julia-sundials julia-unitful julia-JSON %if %{with tests} BuildRequires: %{py3_dist numpy} BuildRequires: %{py3_dist pandas} BuildRequires: %{py3_dist seaborn} %endif # Required by arbor Requires: %{py3_dist numpy} %description %{_description} %package devel Summary: Development files for arbor Requires: arbor%{?_isa} = %{version}-%{release} Provides: arbor-static = %{version}-%{release} %description devel %{_description} %package doc # Does not require the main package, since it may be installed by people using # the MPI builds Summary: Documentation for arbor BuildRequires: python3-sphinx BuildRequires: python3-sphinx_rtd_theme BuildRequires: python3-svgwrite %description doc %{_description} %if %{with mpich} %package mpich Summary: MPICH build for arbor BuildRequires: mpich-devel BuildRequires: rpm-mpi-hooks BuildRequires: python3-mpi4py-mpich Requires: mpich Requires: python3-mpich Requires: python3-mpi4py-mpich Requires: %{py3_dist numpy} Provides: python3-arbor-mpich = %{version}-%{release} %description mpich %{_description} %package mpich-devel Summary: Development files for arbor-mpich Requires: arbor-mpich%{?_isa} = %{version}-%{release} Provides: arbor-mpich-static = %{version}-%{release} %description mpich-devel %{_description} %endif %if %{with openmpi} %package openmpi Summary: OpenMPI build for arbor BuildRequires: openmpi-devel BuildRequires: rpm-mpi-hooks BuildRequires: python3-mpi4py-openmpi Requires: openmpi Requires: python3-openmpi Requires: python3-mpi4py-openmpi Requires: %{py3_dist numpy} Provides: python3-arbor-openmpi = %{version}-%{release} %description openmpi %{_description} %package openmpi-devel Summary: Development files for arbor-openmpi Requires: arbor-openmpi%{?_isa} = %{version}-%{release} Provides: arbor-openmpi-static = %{version}-%{release} %description openmpi-devel %{_description} %endif %prep %forgesetup %patch2 -p1 -b .move_ctor %patch3 -p1 -b .pandas_index # Disable failing padded test sed -i '/test_padded.cpp/ d' test/unit/CMakeLists.txt # should always be included, but is currently included only if bundled pybind11 # is used sed -i '/add_subdirectory(python)/i \ include(FindPythonModule)' CMakeLists.txt # Do not build external libraries sed -i -e 's/ ext-random123//' CMakeLists.txt # Disable doc build: we built it ourselves sed -i '/add_subdirectory(doc)/ d' CMakeLists.txt # Remove ext folders, unbundle libraries rm -vrf ext/google-benchmark ext/json ext/random123 mv ext/tinyopt/LICENSE ext/tinyopt/LICENSE-tinyopt # tclap and json are both header only find . -type f -name "CMakeLists.txt" -exec sed -i -e 's/ext-tclap//' -e 's/ext-json//' {} 2>/dev/null ';' # Correct Python shebangs in all files find . -type f -name "*" -exec sed -i 's|^#![ ]*/usr/bin/env.*python.*$|#!/usr/bin/python3|' {} 2>/dev/null ';' # test scripts cp %{SOURCE1} scripts/ cp %{SOURCE2} scripts/ chmod +x scripts/*.sh sed -i 's/ python / python3 /' scripts/run_python_examples.sh sed -i 's|build/|./|' scripts/run_cpp_examples.sh # builddir for serial mkdir build-serial %if %{with mpich} mkdir build-mpich %endif %if %{with openmpi} mkdir build-openmpi %endif %build # Best to use && so that if anything in the chain fails, the build also fails # straight away %global do_cmake_config %{expand: \ echo echo "*** BUILDING arbor-%{version}$MPI_COMPILE_TYPE ***" echo pushd build$MPI_COMPILE_TYPE && cmake \\\ -DCMAKE_C_FLAGS_RELEASE:STRING="-DNDEBUG" \\\ -DCMAKE_CXX_FLAGS_RELEASE:STRING="-DNDEBUG" \\\ -DCMAKE_Fortran_FLAGS_RELEASE:STRING="-DNDEBUG" \\\ -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON \\\ -DCMAKE_INSTALL_PREFIX:PATH=$MPI_HOME \\\ -DINCLUDE_INSTALL_DIR:PATH=$MPI_INCLUDE \\\ -DLIB_INSTALL_DIR:PATH=$MPI_LIB \\\ -DSYSCONF_INSTALL_DIR:PATH=%{_sysconfdir} \\\ -DSHARE_INSTALL_PREFIX:PATH=%{_datadir} \\\ -DCMAKE_SKIP_RPATH:BOOL=ON \\\ -DCMAKE_BUILD_TYPE:STRING="release" \\\ -DARB_USE_BUNDLED_LIBS:BOOL=OFF \\\ -DARB_USE_BUNDLED_PYBIND11:BOOL=OFF \\\ %ifarch x86_64 i686 aarch64 -DARB_VECTORIZE:BOOL=ON \\\ %else -DARB_VECTORIZE:BOOL=OFF \\\ %endif -DARB_WITH_MPI:BOOL=$MPI_YES \\\ -DARB_WITH_GPU:BOOL=OFF \\\ %ifnarch s390x s390 -DARB_ARCH:STRING="native" \\\ %else -DARB_ARCH:STRING="none" \\\ %endif -DCMAKE_INSTALL_LIBDIR=%{_lib} \\\ -DARB_WITH_PYTHON:BOOL=ON \\\ -DARB_PYTHON_LIB_PATH:STRING=$MPI_PYTHON3_SITEARCH \\\ %if "%{_lib}" == "lib64" -DLIB_SUFFIX=64 .. && %else -DLIB_SUFFIX="" .. && %endif popd || exit -1; # Upstream only supports static libraries # https://github.com/arbor-sim/arbor/issues/916 # -DBUILD_SHARED_LIBS:BOOL=ON \\\ # Missing BRs # -DARB_BUILD_VALIDATION_DATA:BOOL=ON \\\ } %global do_make_build %{expand: \ %make_build -C build$MPI_COMPILE_TYPE || exit -1 %make_build -C build$MPI_COMPILE_TYPE examples || exit -1 %if %{with tests} %make_build -C build$MPI_COMPILE_TYPE tests || exit -1 %endif } # Build serial version, dummy arguments %global __cc gcc %global __cxx g++ %set_build_flags export CC=gcc export CXX=g++ export MPI_SUFFIX="" export MPI_HOME=%{_prefix} export MPI_INCLUDE=%{_includedir} export MPI_LIB=%{_libdir} export MPI_YES=OFF export MPI_COMPILE_TYPE="-serial" export MPI_PYTHON3_SITEARCH=%{python3_sitearch} %{do_cmake_config} %{do_make_build} # Manually make docs in the serial build sphinx-build-%{python3_version} -b html doc html # Remove uneeded dotfiles rm -rfv html/{.buildinfo,.doctrees} # Build mpich version %if %{with mpich} %{_mpich_load} %global __cc mpicc %global __cxx mpicxx %set_build_flags export CC=mpicc export CXX=mpicxx export FC=mpif90 export F77=mpif77 export MPI_YES=ON export MPI_COMPILE_TYPE="-mpich" %{do_cmake_config} %{do_make_build} %{_mpich_unload} %endif # Build OpenMPI version %if %{with openmpi} %{_openmpi_load} %global __cc mpicc %global __cxx mpicxx %set_build_flags export CC=mpicc export CXX=mpicxx export FC=mpif90 export F77=mpif77 export MPI_YES=ON # Python 3 export MPI_COMPILE_TYPE="-openmpi" %{do_cmake_config} %{do_make_build} %{_openmpi_unload} %endif %install # Install everything %global do_install %{expand: \ echo echo "*** INSTALLING arbor-%{version}$MPI_COMPILE_TYPE ***" echo %make_install -C build$MPI_COMPILE_TYPE || exit -1 } # install serial version export MPI_SUFFIX="" export MPI_HOME=%{_prefix} export MPI_BIN=%{_bindir} export MPI_YES=OFF export MPI_COMPILE_TYPE="-serial" %{do_install} # Install MPICH version %if %{with mpich} %{_mpich_load} export MPI_COMPILE_TYPE="-mpich" %{do_install} # Place in correct mpi libdir %if "%{_lib}" == "lib64" mv -v $RPM_BUILD_ROOT/%{_libdir}/mpich/lib64 $RPM_BUILD_ROOT/$MPI_LIB/ %endif pushd $RPM_BUILD_ROOT/$MPI_BIN mv -v modcc{,$MPI_SUFFIX} -v popd %{_mpich_unload} %endif # Install OpenMPI version %if %{with openmpi} %{_openmpi_load} export MPI_COMPILE_TYPE="-openmpi" %{do_install} # Correct location %if "%{_lib}" == "lib64" mv -v $RPM_BUILD_ROOT/%{_libdir}/openmpi/lib64 $RPM_BUILD_ROOT/$MPI_LIB/ %endif pushd $RPM_BUILD_ROOT/$MPI_BIN mv -v modcc{,$MPI_SUFFIX} -v popd %{_openmpi_unload} %endif # https://github.com/arbor-sim/arbor/blob/master/.github/workflows/basic.yml %if %{with tests} %check # General tests export PYTHONPATH="%{buildroot}%{python3_sitearch}:%{buildroot}%{python3_sitelib}" # these tests segfault, filter out pushd build-serial %{python3} ../python/test/unit/runner.py -v2 ./bin/unit ./bin/unit-modcc cp ../scripts/run_cpp_examples.sh . ./run_cpp_examples.sh popd ./scripts/run_python_examples.sh # MPICH %if %{with mpich} %{_mpich_load} export PYTHONPATH="%{buildroot}/$MPI_PYTHON3_SITEARCH" pushd build-mpich #./bin/unit --gtest_filter=-*mc_event_delivery*:*fvm_lowered*:*mc_cell_group* mpirun -n %{_smp_build_ncpus} %{python3} ../python/test/unit_distributed/runner.py -v2 mpirun -n %{_smp_build_ncpus} ./bin/unit-mpi cp ../scripts/run_cpp_examples.sh . ./run_cpp_examples.sh "mpirun -n %{_smp_build_ncpus}" popd ./scripts/run_python_examples.sh "mpirun -n %{_smp_build_ncpus}" %{_mpich_unload} %endif # OpenMPI %if %{with openmpi} %{_openmpi_load} export PYTHONPATH="%{buildroot}/$MPI_PYTHON3_SITEARCH" pushd build-openmpi mpirun -n %{_smp_build_ncpus} %{python3} ../python/test/unit_distributed/runner.py -v2 mpirun -n %{_smp_build_ncpus} ./bin/unit-mpi cp ../scripts/run_cpp_examples.sh . ./run_cpp_examples.sh "mpirun -n %{_smp_build_ncpus}" popd ./scripts/run_python_examples.sh "mpirun -n %{_smp_build_ncpus}" %{_openmpi_unload} %endif %endif %files %license LICENSE ext/tinyopt/LICENSE-tinyopt %doc README.md %{_bindir}/modcc %{python3_sitearch}/arbor %files devel %{_includedir}/arborio %{_includedir}/arbor %{_includedir}/arborenv %{_libdir}/cmake/arbor %{_libdir}/libarbor.a %{_libdir}/libarborio.a %{_libdir}/libarborenv.a %files doc %license LICENSE %doc html %if %{with mpich} %files mpich %doc README.md %license LICENSE ext/tinyopt/LICENSE-tinyopt %{_libdir}/mpich/bin/modcc_mpich %{python3_sitearch}/mpich/arbor %files mpich-devel %{_libdir}/mpich/include/arbor %{_libdir}/mpich/include/arborio %{_libdir}/mpich/include/arborenv %{_libdir}/mpich/lib/cmake/arbor %{_libdir}/mpich/lib/libarbor.a %{_libdir}/mpich/lib/libarborio.a %{_libdir}/mpich/lib/libarborenv.a %endif %if %{with openmpi} %files openmpi %doc README.md %license LICENSE ext/tinyopt/LICENSE-tinyopt %{_libdir}/openmpi/bin/modcc_openmpi %{python3_sitearch}/openmpi/arbor %files openmpi-devel %{_libdir}/openmpi/include/arbor %{_libdir}/openmpi/include/arborio %{_libdir}/openmpi/include/arborenv %{_libdir}/openmpi/lib/cmake/arbor %{_libdir}/openmpi/lib/libarbor.a %{_libdir}/openmpi/lib/libarborio.a %{_libdir}/openmpi/lib/libarborenv.a %endif %changelog * Wed Jul 20 2022 Fedora Release Engineering 0.5.2-8 - Rebuilt for https://fedoraproject.org/wiki/Fedora_37_Mass_Rebuild * Tue Jul 05 2022 Mamoru TASAKA 0.5.2-7 - Fix FTBFS on F37 - Workaround for %%%%__cc macro expansion issue (bug 2103479) - backport upstream fix for test failure wrt move instruction omission on ctor with recent compiler - backport upstream fix for pandas error with duplicate indices * Wed Jun 15 2022 Python Maint 0.5.2-6 - Rebuilt for Python 3.11 * Wed Jan 19 2022 Fedora Release Engineering 0.5.2-5 - Rebuilt for https://fedoraproject.org/wiki/Fedora_36_Mass_Rebuild * Sat Sep 25 2021 Ankur Sinha (Ankur Sinha Gmail) 0.5.2-4 - chore: remove second unneeded patch * Sat Sep 25 2021 Ankur Sinha (Ankur Sinha Gmail) 0.5.2-3 - feat: correct flags for s390 builds * Sat Sep 25 2021 Ankur Sinha (Ankur Sinha Gmail) 0.5.2-2 - chore: remove unused patch * Sat Sep 25 2021 Ankur Sinha (Ankur Sinha Gmail) 0.5.2-1 - feat: update to 0.5.2 * Wed Jul 21 2021 Fedora Release Engineering 0.3-13 - Rebuilt for https://fedoraproject.org/wiki/Fedora_35_Mass_Rebuild * Wed Jul 21 2021 Fedora Release Engineering 0.3-12 - Rebuilt for https://fedoraproject.org/wiki/Fedora_35_Mass_Rebuild * Fri Jun 04 2021 Python Maint 0.3-11 - Rebuilt for Python 3.10 * Tue Jan 26 2021 Fedora Release Engineering 0.3-10 - Rebuilt for https://fedoraproject.org/wiki/Fedora_34_Mass_Rebuild * Wed Dec 16 2020 Tom Stellard 0.3-9 - Add BuildRequires: make * Mon Oct 05 2020 Ankur Sinha (Ankur Sinha Gmail) 0.3-8 - Explicitly require setuptools * Fri Aug 28 2020 Jeff Law 0.3-7 - Re-enable LTO Do not force -march=native on armv7hl so that build architecture does not bleed into the binaries. This should probably be done on all targets * Sat Aug 01 2020 Fedora Release Engineering 0.3-6 - Second attempt - Rebuilt for https://fedoraproject.org/wiki/Fedora_33_Mass_Rebuild * Mon Jul 27 2020 Jeff Law 0.3-5 - Disable LTO for armv7hl build * Mon Jul 27 2020 Fedora Release Engineering 0.3-4 - Rebuilt for https://fedoraproject.org/wiki/Fedora_33_Mass_Rebuild * Sun Jun 28 2020 Ankur Sinha (Ankur Sinha Gmail) 0.3-3 - Update compiler and compiler flags * Mon Jun 08 2020 sagitter 0.3-2 - Move Provides lines to runtime packages * Mon Jun 08 2020 sagitter 0.3-1 - Release 0.3 * Tue May 26 2020 Miro Hrončok 0.2.2-3 - Rebuilt for Python 3.9 * Thu Apr 02 2020 Björn Esser 0.2.2-2 - Bump release * Thu Apr 02 2020 Björn Esser 0.2.2-1 - Fix string quoting for rpm >= 4.16 * Wed Feb 26 2020 Ankur Sinha (Ankur Sinha Gmail) - Update to new commit: fix 32bit builds * Sun Feb 23 2020 Ankur Sinha (Ankur Sinha Gmail) - Fix build using snapshot * Tue Jan 28 2020 Fedora Release Engineering - Rebuilt for https://fedoraproject.org/wiki/Fedora_32_Mass_Rebuild * Tue Dec 10 2019 Ankur Sinha (Ankur Sinha Gmail) - Initial import