Warning: Permanently added '44.204.111.192' (ED25519) to the list of known hosts. Running: /usr/bin/copr-rpmbuild --verbose --drop-resultdir --build-id 4736310 --chroot fedora-rawhide-x86_64 --detached Version: 0.61 PID: 25138 Logging PID: 25139 Task: {'appstream': False, 'background': True, 'build_id': 4736310, 'buildroot_pkgs': [], 'chroot': 'fedora-rawhide-x86_64', 'enable_net': True, 'fedora_review': False, 'git_hash': 'e3f1246f5c53844a2eb16bb99bb808c622f60241', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/thrnciar/mpb.15/dolfin', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'dolfin', 'package_version': '2019.1.0.post0-34', 'project_dirname': 'mpb.15', 'project_name': 'mpb.15', 'project_owner': 'thrnciar', 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/thrnciar/mpb.15/fedora-rawhide-x86_64/', 'id': 'copr_base', 'name': 'Copr repository'}], 'sandbox': 'thrnciar/mpb.15--thrnciar', 'source_json': {}, 'source_type': None, 'submitter': 'thrnciar', 'tags': [], 'task_id': '4736310-fedora-rawhide-x86_64', 'timeout': 108000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/thrnciar/mpb.15/dolfin /var/lib/copr-rpmbuild/workspace/workdir-vgy5gmh1/dolfin --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/thrnciar/mpb.15/dolfin', '/var/lib/copr-rpmbuild/workspace/workdir-vgy5gmh1/dolfin', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-vgy5gmh1/dolfin'... Running: git checkout e3f1246f5c53844a2eb16bb99bb808c622f60241 cmd: ['git', 'checkout', 'e3f1246f5c53844a2eb16bb99bb808c622f60241'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-vgy5gmh1/dolfin rc: 0 stdout: stderr: Note: switching to 'e3f1246f5c53844a2eb16bb99bb808c622f60241'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at e3f1246 automatic import of dolfin Running: copr-distgit-client sources /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated cmd: ['copr-distgit-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-vgy5gmh1/dolfin rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading dolfin-2019.1.0.post0.tar.gz INFO: Calling: curl -H Pragma: -o dolfin-2019.1.0.post0.tar.gz --location --remote-time --show-error --fail https://copr-dist-git.fedorainfracloud.org/repo/pkgs/thrnciar/mpb.15/dolfin/dolfin-2019.1.0.post0.tar.gz/md5/79a564ec8f605b8ec434366828e84b60/dolfin-2019.1.0.post0.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 10.2M 100 10.2M 0 0 20.7M 0 --:--:-- --:--:-- --:--:-- 20.7M INFO: Reading stdout from command: md5sum dolfin-2019.1.0.post0.tar.gz Running (timeout=108000): unbuffer mock --buildsrpm --spec /var/lib/copr-rpmbuild/workspace/workdir-vgy5gmh1/dolfin/dolfin.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-vgy5gmh1/dolfin --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1660636830.872585 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 3.1 starting (python version = 3.10.4, NVR = mock-3.1-1.fc35)... Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-vgy5gmh1/dolfin/dolfin.spec) Config(fedora-rawhide-x86_64) Start: clean chroot Finish: clean chroot Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1660636830.872585/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 3.1 INFO: Mock Version: 3.1 Start(bootstrap): dnf install No matches found for the following disable plugin patterns: local, spacewalk, versionlock Updating Subscription Management repositories. Unable to read consumer identity This system is not registered with an entitlement server. You can use subscription-manager to register. Copr repository 3.8 MB/s | 229 kB 00:00 fedora 17 MB/s | 65 MB 00:03 Dependencies resolved. ================================================================================ Package Arch Version Repo Size ================================================================================ Installing: dnf noarch 4.13.0-3.fc37 fedora 464 k dnf-plugins-core noarch 4.2.1-3.fc37 fedora 34 k Installing dependencies: alternatives x86_64 1.19-3.fc37 fedora 36 k audit-libs x86_64 3.0.8-3.fc37 fedora 116 k basesystem noarch 11-14.fc37 fedora 7.0 k bash x86_64 5.1.16-3.fc37 fedora 1.7 M bzip2-libs x86_64 1.0.8-12.fc37 fedora 41 k ca-certificates noarch 2022.2.54-5.fc37 fedora 829 k coreutils x86_64 9.1-6.fc37 fedora 1.1 M coreutils-common x86_64 9.1-6.fc37 fedora 2.0 M crypto-policies noarch 20220802-1.gita99dfd2.fc37 fedora 86 k curl x86_64 7.84.0-2.fc37 fedora 313 k cyrus-sasl-lib x86_64 2.1.28-7.fc37 fedora 792 k dbus-libs x86_64 1:1.14.0-3.fc37 fedora 155 k dnf-data noarch 4.13.0-3.fc37 fedora 42 k elfutils-default-yama-scope noarch 0.187-6.fc37 fedora 17 k elfutils-libelf x86_64 0.187-6.fc37 fedora 197 k elfutils-libs x86_64 0.187-6.fc37 fedora 257 k expat x86_64 2.4.8-2.fc37 fedora 110 k fedora-gpg-keys noarch 38-0.2 fedora 125 k fedora-release noarch 38-0.2 fedora 12 k fedora-release-common noarch 38-0.2 fedora 22 k fedora-release-identity-basic noarch 38-0.2 fedora 12 k fedora-repos noarch 38-0.2 fedora 10 k fedora-repos-rawhide noarch 38-0.2 fedora 9.6 k file-libs x86_64 5.42-4.fc37 fedora 676 k filesystem x86_64 3.18-2.fc37 fedora 1.1 M findutils x86_64 1:4.9.0-2.fc37 fedora 492 k gawk x86_64 5.1.1-4.fc37 fedora 1.0 M gdbm-libs x86_64 1:1.23-2.fc37 fedora 56 k glib2 x86_64 2.73.2-7.fc37 fedora 2.7 M glibc x86_64 2.36-1.fc37 fedora 2.1 M glibc-common x86_64 2.36-1.fc37 fedora 359 k glibc-minimal-langpack x86_64 2.36-1.fc37 fedora 81 k gmp x86_64 1:6.2.1-3.fc37 fedora 315 k gnupg2 x86_64 2.3.7-3.fc37 fedora 2.5 M gnutls x86_64 3.7.7-1.fc37 fedora 1.1 M gpgme x86_64 1.17.0-4.fc37 fedora 210 k grep x86_64 3.7-4.fc37 fedora 273 k ima-evm-utils x86_64 1.4-6.fc37 fedora 63 k json-c x86_64 0.16-2.fc37 fedora 41 k keyutils-libs x86_64 1.6.1-5.fc37 fedora 31 k krb5-libs x86_64 1.19.2-11.fc37.1 fedora 727 k libacl x86_64 2.3.1-4.fc37 fedora 23 k libarchive x86_64 3.6.1-2.fc37 fedora 397 k libassuan x86_64 2.5.5-5.fc37 fedora 67 k libattr x86_64 2.5.1-5.fc37 fedora 18 k libb2 x86_64 0.98.1-7.fc37 fedora 25 k libblkid x86_64 2.38.1-1.fc37 fedora 107 k libbrotli x86_64 1.0.9-9.fc38 copr_base 316 k libcap x86_64 2.48-5.fc37 fedora 67 k libcap-ng x86_64 0.8.3-3.fc37 fedora 33 k libcom_err x86_64 1.46.5-3.fc37 fedora 25 k libcomps x86_64 0.1.18-4.fc37 fedora 76 k libcurl x86_64 7.84.0-2.fc37 fedora 306 k libdnf x86_64 0.67.0-4.fc37 fedora 672 k libevent x86_64 2.1.12-7.fc37 fedora 261 k libffi x86_64 3.4.2-9.fc37 fedora 37 k libfsverity x86_64 1.4-8.fc37 fedora 19 k libgcc x86_64 12.1.1-4.fc38 fedora 106 k libgcrypt x86_64 1.10.1-4.fc37 fedora 512 k libgomp x86_64 12.1.1-4.fc38 fedora 293 k libgpg-error x86_64 1.45-2.fc37 fedora 227 k libidn2 x86_64 2.3.3-2.fc37 fedora 113 k libksba x86_64 1.6.0-4.fc37 fedora 157 k libmodulemd x86_64 2.14.0-4.fc37 fedora 234 k libmount x86_64 2.38.1-1.fc37 fedora 135 k libnghttp2 x86_64 1.48.0-2.fc37 fedora 75 k libnsl2 x86_64 2.0.0-4.fc37 fedora 30 k libpsl x86_64 0.21.1-6.fc37 fedora 63 k librepo x86_64 1.14.3-3.fc37 fedora 94 k libreport-filesystem noarch 2.17.1-3.fc37 fedora 14 k libselinux x86_64 3.4-5.fc37 fedora 86 k libsemanage x86_64 3.4-5.fc37 fedora 120 k libsepol x86_64 3.4-3.fc37 fedora 322 k libsigsegv x86_64 2.14-3.fc37 fedora 27 k libsmartcols x86_64 2.38.1-1.fc37 fedora 64 k libsolv x86_64 0.7.22-3.fc37 fedora 405 k libssh x86_64 0.9.6-5.fc37 fedora 203 k libssh-config noarch 0.9.6-5.fc37 fedora 7.8 k libstdc++ x86_64 12.1.1-4.fc38 fedora 798 k libtasn1 x86_64 4.18.0-3.fc37 fedora 75 k libtirpc x86_64 1.3.3-0.fc37 fedora 93 k libunistring x86_64 1.0-2.fc37 fedora 549 k libuuid x86_64 2.38.1-1.fc37 fedora 28 k libverto x86_64 0.3.2-4.fc37 fedora 21 k libxcrypt x86_64 4.4.28-3.fc38 fedora 117 k libxml2 x86_64 2.9.14-3.fc37 fedora 752 k libyaml x86_64 0.2.5-8.fc37 fedora 60 k libzstd x86_64 1.5.2-3.fc37 fedora 294 k lua-libs x86_64 5.4.4-4.fc37 fedora 217 k lz4-libs x86_64 1.9.3-5.fc37 fedora 70 k mpdecimal x86_64 2.5.1-4.fc37 fedora 102 k mpfr x86_64 4.1.0-10.fc37 fedora 331 k ncurses-base noarch 6.3-3.20220501.fc37 fedora 86 k ncurses-libs x86_64 6.3-3.20220501.fc37 fedora 329 k nettle x86_64 3.8-2.fc37 fedora 414 k npth x86_64 1.6-9.fc37 fedora 24 k openldap x86_64 2.6.2-5.fc38 fedora 254 k openssl-libs x86_64 1:3.0.5-2.fc37 fedora 2.1 M p11-kit x86_64 0.24.1-3.fc37 fedora 376 k p11-kit-trust x86_64 0.24.1-3.fc37 fedora 138 k pcre x86_64 8.45-1.fc37.2 fedora 202 k pcre2 x86_64 10.40-1.fc37.1 fedora 236 k pcre2-syntax noarch 10.40-1.fc37.1 fedora 142 k popt x86_64 1.19~rc1-3.fc37 fedora 65 k publicsuffix-list-dafsa noarch 20210518-5.fc37 fedora 58 k python-pip-wheel noarch 22.2-1.fc37 fedora 1.4 M python-setuptools-wheel noarch 65.0.1-1.fc38 copr_base 701 k python3 x86_64 3.11.0~rc1-1.fc38 fedora 27 k python3-dateutil noarch 1:2.8.2-4.fc37 fedora 361 k python3-dbus x86_64 1.2.18-5.fc37 fedora 156 k python3-distro noarch 1.7.0-3.fc37 fedora 48 k python3-dnf noarch 4.13.0-3.fc37 fedora 605 k python3-dnf-plugins-core noarch 4.2.1-3.fc37 fedora 268 k python3-gpg x86_64 1.17.0-4.fc37 fedora 298 k python3-hawkey x86_64 0.67.0-4.fc37 fedora 108 k python3-libcomps x86_64 0.1.18-4.fc37 fedora 48 k python3-libdnf x86_64 0.67.0-4.fc37 fedora 818 k python3-libs x86_64 3.11.0~rc1-1.fc38 fedora 9.6 M python3-rpm x86_64 4.18.0-0.beta1.4.fc37 fedora 93 k python3-six noarch 1.16.0-8.fc37 fedora 42 k readline x86_64 8.1-7.fc37 fedora 211 k rpm x86_64 4.18.0-0.beta1.4.fc37 fedora 570 k rpm-build-libs x86_64 4.18.0-0.beta1.4.fc37 fedora 93 k rpm-libs x86_64 4.18.0-0.beta1.4.fc37 fedora 319 k rpm-sign-libs x86_64 4.18.0-0.beta1.4.fc37 fedora 26 k sed x86_64 4.8-11.fc37 fedora 306 k setup noarch 2.14.1-2.fc37 fedora 149 k shadow-utils x86_64 2:4.11.1-4.fc37 fedora 1.1 M sqlite-libs x86_64 3.39.2-2.fc37 fedora 657 k systemd-libs x86_64 251.4-51.fc37 fedora 620 k tpm2-tss x86_64 3.2.0-3.fc37 fedora 600 k tzdata noarch 2022b-1.fc38 fedora 717 k xz-libs x86_64 5.2.5-10.fc37 fedora 92 k zchunk-libs x86_64 1.2.2-2.fc37 fedora 51 k zlib x86_64 1.2.12-4.fc37 fedora 94 k Transaction Summary ================================================================================ Install 137 Packages Total download size: 56 M Installed size: 195 M Downloading Packages: (1/137): libbrotli-1.0.9-9.fc38.x86_64.rpm 11 MB/s | 316 kB 00:00 (2/137): python-setuptools-wheel-65.0.1-1.fc38. 19 MB/s | 701 kB 00:00 (3/137): basesystem-11-14.fc37.noarch.rpm 109 kB/s | 7.0 kB 00:00 (4/137): alternatives-1.19-3.fc37.x86_64.rpm 260 kB/s | 36 kB 00:00 (5/137): bzip2-libs-1.0.8-12.fc37.x86_64.rpm 590 kB/s | 41 kB 00:00 (6/137): audit-libs-3.0.8-3.fc37.x86_64.rpm 548 kB/s | 116 kB 00:00 (7/137): coreutils-9.1-6.fc37.x86_64.rpm 3.2 MB/s | 1.1 MB 00:00 (8/137): ca-certificates-2022.2.54-5.fc37.noarc 2.2 MB/s | 829 kB 00:00 (9/137): bash-5.1.16-3.fc37.x86_64.rpm 3.2 MB/s | 1.7 MB 00:00 (10/137): crypto-policies-20220802-1.gita99dfd2 1.9 MB/s | 86 kB 00:00 (11/137): curl-7.84.0-2.fc37.x86_64.rpm 7.2 MB/s | 313 kB 00:00 (12/137): dbus-libs-1.14.0-3.fc37.x86_64.rpm 2.4 MB/s | 155 kB 00:00 (13/137): coreutils-common-9.1-6.fc37.x86_64.rp 12 MB/s | 2.0 MB 00:00 (14/137): cyrus-sasl-lib-2.1.28-7.fc37.x86_64.r 6.3 MB/s | 792 kB 00:00 (15/137): dnf-4.13.0-3.fc37.noarch.rpm 12 MB/s | 464 kB 00:00 (16/137): dnf-data-4.13.0-3.fc37.noarch.rpm 1.4 MB/s | 42 kB 00:00 (17/137): dnf-plugins-core-4.2.1-3.fc37.noarch. 1.0 MB/s | 34 kB 00:00 (18/137): elfutils-default-yama-scope-0.187-6.f 530 kB/s | 17 kB 00:00 (19/137): elfutils-libs-0.187-6.fc37.x86_64.rpm 6.8 MB/s | 257 kB 00:00 (20/137): elfutils-libelf-0.187-6.fc37.x86_64.r 3.3 MB/s | 197 kB 00:00 (21/137): fedora-gpg-keys-38-0.2.noarch.rpm 3.5 MB/s | 125 kB 00:00 (22/137): fedora-release-38-0.2.noarch.rpm 394 kB/s | 12 kB 00:00 (23/137): expat-2.4.8-2.fc37.x86_64.rpm 1.7 MB/s | 110 kB 00:00 (24/137): fedora-release-common-38-0.2.noarch.r 661 kB/s | 22 kB 00:00 (25/137): fedora-release-identity-basic-38-0.2. 422 kB/s | 12 kB 00:00 (26/137): fedora-repos-38-0.2.noarch.rpm 324 kB/s | 10 kB 00:00 (27/137): fedora-repos-rawhide-38-0.2.noarch.rp 289 kB/s | 9.6 kB 00:00 (28/137): file-libs-5.42-4.fc37.x86_64.rpm 17 MB/s | 676 kB 00:00 (29/137): filesystem-3.18-2.fc37.x86_64.rpm 13 MB/s | 1.1 MB 00:00 (30/137): findutils-4.9.0-2.fc37.x86_64.rpm 6.7 MB/s | 492 kB 00:00 (31/137): gawk-5.1.1-4.fc37.x86_64.rpm 15 MB/s | 1.0 MB 00:00 (32/137): gdbm-libs-1.23-2.fc37.x86_64.rpm 898 kB/s | 56 kB 00:00 (33/137): glibc-common-2.36-1.fc37.x86_64.rpm 8.2 MB/s | 359 kB 00:00 (34/137): glibc-2.36-1.fc37.x86_64.rpm 19 MB/s | 2.1 MB 00:00 (35/137): glibc-minimal-langpack-2.36-1.fc37.x8 2.5 MB/s | 81 kB 00:00 (36/137): gmp-6.2.1-3.fc37.x86_64.rpm 9.0 MB/s | 315 kB 00:00 (37/137): glib2-2.73.2-7.fc37.x86_64.rpm 14 MB/s | 2.7 MB 00:00 (38/137): gnutls-3.7.7-1.fc37.x86_64.rpm 17 MB/s | 1.1 MB 00:00 (39/137): gpgme-1.17.0-4.fc37.x86_64.rpm 5.7 MB/s | 210 kB 00:00 (40/137): gnupg2-2.3.7-3.fc37.x86_64.rpm 20 MB/s | 2.5 MB 00:00 (41/137): grep-3.7-4.fc37.x86_64.rpm 6.8 MB/s | 273 kB 00:00 (42/137): json-c-0.16-2.fc37.x86_64.rpm 1.3 MB/s | 41 kB 00:00 (43/137): keyutils-libs-1.6.1-5.fc37.x86_64.rpm 1.0 MB/s | 31 kB 00:00 (44/137): ima-evm-utils-1.4-6.fc37.x86_64.rpm 954 kB/s | 63 kB 00:00 (45/137): libacl-2.3.1-4.fc37.x86_64.rpm 636 kB/s | 23 kB 00:00 (46/137): krb5-libs-1.19.2-11.fc37.1.x86_64.rpm 16 MB/s | 727 kB 00:00 (47/137): libassuan-2.5.5-5.fc37.x86_64.rpm 2.2 MB/s | 67 kB 00:00 (48/137): libattr-2.5.1-5.fc37.x86_64.rpm 578 kB/s | 18 kB 00:00 (49/137): libarchive-3.6.1-2.fc37.x86_64.rpm 5.7 MB/s | 397 kB 00:00 (50/137): libb2-0.98.1-7.fc37.x86_64.rpm 847 kB/s | 25 kB 00:00 (51/137): libcap-2.48-5.fc37.x86_64.rpm 1.8 MB/s | 67 kB 00:00 (52/137): libcap-ng-0.8.3-3.fc37.x86_64.rpm 1.0 MB/s | 33 kB 00:00 (53/137): libblkid-2.38.1-1.fc37.x86_64.rpm 1.6 MB/s | 107 kB 00:00 (54/137): libcom_err-1.46.5-3.fc37.x86_64.rpm 762 kB/s | 25 kB 00:00 (55/137): libcomps-0.1.18-4.fc37.x86_64.rpm 2.5 MB/s | 76 kB 00:00 (56/137): libcurl-7.84.0-2.fc37.x86_64.rpm 8.4 MB/s | 306 kB 00:00 (57/137): libdnf-0.67.0-4.fc37.x86_64.rpm 14 MB/s | 672 kB 00:00 (58/137): libevent-2.1.12-7.fc37.x86_64.rpm 6.7 MB/s | 261 kB 00:00 (59/137): libffi-3.4.2-9.fc37.x86_64.rpm 1.2 MB/s | 37 kB 00:00 (60/137): libfsverity-1.4-8.fc37.x86_64.rpm 580 kB/s | 19 kB 00:00 (61/137): libgcrypt-1.10.1-4.fc37.x86_64.rpm 13 MB/s | 512 kB 00:00 (62/137): libgcc-12.1.1-4.fc38.x86_64.rpm 1.8 MB/s | 106 kB 00:00 (63/137): libgpg-error-1.45-2.fc37.x86_64.rpm 6.4 MB/s | 227 kB 00:00 (64/137): libidn2-2.3.3-2.fc37.x86_64.rpm 3.7 MB/s | 113 kB 00:00 (65/137): libgomp-12.1.1-4.fc38.x86_64.rpm 4.2 MB/s | 293 kB 00:00 (66/137): libmodulemd-2.14.0-4.fc37.x86_64.rpm 7.1 MB/s | 234 kB 00:00 (67/137): libmount-2.38.1-1.fc37.x86_64.rpm 3.8 MB/s | 135 kB 00:00 (68/137): libksba-1.6.0-4.fc37.x86_64.rpm 2.4 MB/s | 157 kB 00:00 (69/137): libnghttp2-1.48.0-2.fc37.x86_64.rpm 2.4 MB/s | 75 kB 00:00 (70/137): libnsl2-2.0.0-4.fc37.x86_64.rpm 893 kB/s | 30 kB 00:00 (71/137): librepo-1.14.3-3.fc37.x86_64.rpm 3.1 MB/s | 94 kB 00:00 (72/137): libreport-filesystem-2.17.1-3.fc37.no 408 kB/s | 14 kB 00:00 (73/137): libpsl-0.21.1-6.fc37.x86_64.rpm 1.0 MB/s | 63 kB 00:00 (74/137): libselinux-3.4-5.fc37.x86_64.rpm 2.8 MB/s | 86 kB 00:00 (75/137): libsemanage-3.4-5.fc37.x86_64.rpm 3.4 MB/s | 120 kB 00:00 (76/137): libsigsegv-2.14-3.fc37.x86_64.rpm 899 kB/s | 27 kB 00:00 (77/137): libsepol-3.4-3.fc37.x86_64.rpm 8.4 MB/s | 322 kB 00:00 (78/137): libsmartcols-2.38.1-1.fc37.x86_64.rpm 1.8 MB/s | 64 kB 00:00 (79/137): libsolv-0.7.22-3.fc37.x86_64.rpm 11 MB/s | 405 kB 00:00 (80/137): libssh-config-0.9.6-5.fc37.noarch.rpm 235 kB/s 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-------------------------------------------------------------------------------- Total 19 MB/s | 56 MB 00:02 fedora 1.6 MB/s | 1.6 kB 00:00 Importing GPG key 0xEB10B464: Userid : "Fedora (38) " Fingerprint: 6A51 BBAB BA3D 5467 B617 1221 809A 8D7C EB10 B464 From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-38-primary Key imported successfully fedora 1.6 MB/s | 1.6 kB 00:00 GPG key at file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-38-primary (0xEB10B464) is already installed fedora 1.6 MB/s | 1.6 kB 00:00 Importing GPG key 0x5323552A: Userid : "Fedora (37) " Fingerprint: ACB5 EE4E 831C 74BB 7C16 8D27 F55A D3FB 5323 552A From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-37-primary Key imported successfully Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Running scriptlet: filesystem-3.18-2.fc37.x86_64 1/1 Preparing : 1/1 Installing : libgcc-12.1.1-4.fc38.x86_64 1/137 Running scriptlet: libgcc-12.1.1-4.fc38.x86_64 1/137 Installing : crypto-policies-20220802-1.gita99dfd2.fc37.noarc 2/137 Running scriptlet: crypto-policies-20220802-1.gita99dfd2.fc37.noarc 2/137 Installing : tzdata-2022b-1.fc38.noarch 3/137 Installing : fedora-release-identity-basic-38-0.2.noarch 4/137 Installing : publicsuffix-list-dafsa-20210518-5.fc37.noarch 5/137 Installing : pcre2-syntax-10.40-1.fc37.1.noarch 6/137 Installing : ncurses-base-6.3-3.20220501.fc37.noarch 7/137 Installing : libssh-config-0.9.6-5.fc37.noarch 8/137 Installing : libreport-filesystem-2.17.1-3.fc37.noarch 9/137 Installing : dnf-data-4.13.0-3.fc37.noarch 10/137 warning: /etc/dnf/dnf.conf created as /etc/dnf/dnf.conf.rpmnew Installing : fedora-gpg-keys-38-0.2.noarch 11/137 Installing : fedora-release-38-0.2.noarch 12/137 Installing : fedora-release-common-38-0.2.noarch 13/137 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tpm2-tss-3.2.0-3.fc37.x86_64 119/137 Installing : ima-evm-utils-1.4-6.fc37.x86_64 120/137 Installing : rpm-sign-libs-4.18.0-0.beta1.4.fc37.x86_64 121/137 Installing : python-setuptools-wheel-65.0.1-1.fc38.noarch 122/137 Installing : python3-3.11.0~rc1-1.fc38.x86_64 123/137 Installing : python3-libs-3.11.0~rc1-1.fc38.x86_64 124/137 Installing : python3-libdnf-0.67.0-4.fc37.x86_64 125/137 Installing : python3-hawkey-0.67.0-4.fc37.x86_64 126/137 Installing : python3-dbus-1.2.18-5.fc37.x86_64 127/137 Installing : python3-libcomps-0.1.18-4.fc37.x86_64 128/137 Installing : python3-distro-1.7.0-3.fc37.noarch 129/137 Installing : python3-gpg-1.17.0-4.fc37.x86_64 130/137 Installing : python3-rpm-4.18.0-0.beta1.4.fc37.x86_64 131/137 Installing : python3-dnf-4.13.0-3.fc37.noarch 132/137 Installing : python3-six-1.16.0-8.fc37.noarch 133/137 Installing : python3-dateutil-1:2.8.2-4.fc37.noarch 134/137 Installing : python3-dnf-plugins-core-4.2.1-3.fc37.noarch 135/137 Installing : dnf-plugins-core-4.2.1-3.fc37.noarch 136/137 Installing : dnf-4.13.0-3.fc37.noarch 137/137 Running scriptlet: dnf-4.13.0-3.fc37.noarch 137/137 Running scriptlet: filesystem-3.18-2.fc37.x86_64 137/137 Running scriptlet: ca-certificates-2022.2.54-5.fc37.noarch 137/137 Running scriptlet: rpm-4.18.0-0.beta1.4.fc37.x86_64 137/137 Running scriptlet: dnf-4.13.0-3.fc37.noarch 137/137 Verifying : libbrotli-1.0.9-9.fc38.x86_64 1/137 Verifying : python-setuptools-wheel-65.0.1-1.fc38.noarch 2/137 Verifying : alternatives-1.19-3.fc37.x86_64 3/137 Verifying : audit-libs-3.0.8-3.fc37.x86_64 4/137 Verifying : basesystem-11-14.fc37.noarch 5/137 Verifying : bash-5.1.16-3.fc37.x86_64 6/137 Verifying : bzip2-libs-1.0.8-12.fc37.x86_64 7/137 Verifying : ca-certificates-2022.2.54-5.fc37.noarch 8/137 Verifying : coreutils-9.1-6.fc37.x86_64 9/137 Verifying : coreutils-common-9.1-6.fc37.x86_64 10/137 Verifying : crypto-policies-20220802-1.gita99dfd2.fc37.noarc 11/137 Verifying : curl-7.84.0-2.fc37.x86_64 12/137 Verifying : cyrus-sasl-lib-2.1.28-7.fc37.x86_64 13/137 Verifying : dbus-libs-1:1.14.0-3.fc37.x86_64 14/137 Verifying : dnf-4.13.0-3.fc37.noarch 15/137 Verifying : dnf-data-4.13.0-3.fc37.noarch 16/137 Verifying : dnf-plugins-core-4.2.1-3.fc37.noarch 17/137 Verifying : elfutils-default-yama-scope-0.187-6.fc37.noarch 18/137 Verifying : elfutils-libelf-0.187-6.fc37.x86_64 19/137 Verifying : elfutils-libs-0.187-6.fc37.x86_64 20/137 Verifying : expat-2.4.8-2.fc37.x86_64 21/137 Verifying : fedora-gpg-keys-38-0.2.noarch 22/137 Verifying : fedora-release-38-0.2.noarch 23/137 Verifying : fedora-release-common-38-0.2.noarch 24/137 Verifying : fedora-release-identity-basic-38-0.2.noarch 25/137 Verifying : fedora-repos-38-0.2.noarch 26/137 Verifying : fedora-repos-rawhide-38-0.2.noarch 27/137 Verifying : file-libs-5.42-4.fc37.x86_64 28/137 Verifying : filesystem-3.18-2.fc37.x86_64 29/137 Verifying : findutils-1:4.9.0-2.fc37.x86_64 30/137 Verifying : gawk-5.1.1-4.fc37.x86_64 31/137 Verifying : gdbm-libs-1:1.23-2.fc37.x86_64 32/137 Verifying : glib2-2.73.2-7.fc37.x86_64 33/137 Verifying : glibc-2.36-1.fc37.x86_64 34/137 Verifying : glibc-common-2.36-1.fc37.x86_64 35/137 Verifying : glibc-minimal-langpack-2.36-1.fc37.x86_64 36/137 Verifying : gmp-1:6.2.1-3.fc37.x86_64 37/137 Verifying : gnupg2-2.3.7-3.fc37.x86_64 38/137 Verifying : gnutls-3.7.7-1.fc37.x86_64 39/137 Verifying : gpgme-1.17.0-4.fc37.x86_64 40/137 Verifying : grep-3.7-4.fc37.x86_64 41/137 Verifying : ima-evm-utils-1.4-6.fc37.x86_64 42/137 Verifying : json-c-0.16-2.fc37.x86_64 43/137 Verifying : keyutils-libs-1.6.1-5.fc37.x86_64 44/137 Verifying : krb5-libs-1.19.2-11.fc37.1.x86_64 45/137 Verifying : libacl-2.3.1-4.fc37.x86_64 46/137 Verifying : libarchive-3.6.1-2.fc37.x86_64 47/137 Verifying : libassuan-2.5.5-5.fc37.x86_64 48/137 Verifying : libattr-2.5.1-5.fc37.x86_64 49/137 Verifying : libb2-0.98.1-7.fc37.x86_64 50/137 Verifying : libblkid-2.38.1-1.fc37.x86_64 51/137 Verifying : libcap-2.48-5.fc37.x86_64 52/137 Verifying : libcap-ng-0.8.3-3.fc37.x86_64 53/137 Verifying : libcom_err-1.46.5-3.fc37.x86_64 54/137 Verifying : libcomps-0.1.18-4.fc37.x86_64 55/137 Verifying : libcurl-7.84.0-2.fc37.x86_64 56/137 Verifying : libdnf-0.67.0-4.fc37.x86_64 57/137 Verifying : libevent-2.1.12-7.fc37.x86_64 58/137 Verifying : libffi-3.4.2-9.fc37.x86_64 59/137 Verifying : libfsverity-1.4-8.fc37.x86_64 60/137 Verifying : libgcc-12.1.1-4.fc38.x86_64 61/137 Verifying : libgcrypt-1.10.1-4.fc37.x86_64 62/137 Verifying : libgomp-12.1.1-4.fc38.x86_64 63/137 Verifying : libgpg-error-1.45-2.fc37.x86_64 64/137 Verifying : libidn2-2.3.3-2.fc37.x86_64 65/137 Verifying : libksba-1.6.0-4.fc37.x86_64 66/137 Verifying : libmodulemd-2.14.0-4.fc37.x86_64 67/137 Verifying : libmount-2.38.1-1.fc37.x86_64 68/137 Verifying : libnghttp2-1.48.0-2.fc37.x86_64 69/137 Verifying : libnsl2-2.0.0-4.fc37.x86_64 70/137 Verifying : libpsl-0.21.1-6.fc37.x86_64 71/137 Verifying : librepo-1.14.3-3.fc37.x86_64 72/137 Verifying : libreport-filesystem-2.17.1-3.fc37.noarch 73/137 Verifying : libselinux-3.4-5.fc37.x86_64 74/137 Verifying : libsemanage-3.4-5.fc37.x86_64 75/137 Verifying : libsepol-3.4-3.fc37.x86_64 76/137 Verifying : libsigsegv-2.14-3.fc37.x86_64 77/137 Verifying : libsmartcols-2.38.1-1.fc37.x86_64 78/137 Verifying : libsolv-0.7.22-3.fc37.x86_64 79/137 Verifying : libssh-0.9.6-5.fc37.x86_64 80/137 Verifying : libssh-config-0.9.6-5.fc37.noarch 81/137 Verifying : libstdc++-12.1.1-4.fc38.x86_64 82/137 Verifying : libtasn1-4.18.0-3.fc37.x86_64 83/137 Verifying : libtirpc-1.3.3-0.fc37.x86_64 84/137 Verifying : libunistring-1.0-2.fc37.x86_64 85/137 Verifying : libuuid-2.38.1-1.fc37.x86_64 86/137 Verifying : libverto-0.3.2-4.fc37.x86_64 87/137 Verifying : libxcrypt-4.4.28-3.fc38.x86_64 88/137 Verifying : libxml2-2.9.14-3.fc37.x86_64 89/137 Verifying : libyaml-0.2.5-8.fc37.x86_64 90/137 Verifying : libzstd-1.5.2-3.fc37.x86_64 91/137 Verifying : lua-libs-5.4.4-4.fc37.x86_64 92/137 Verifying : lz4-libs-1.9.3-5.fc37.x86_64 93/137 Verifying : mpdecimal-2.5.1-4.fc37.x86_64 94/137 Verifying : mpfr-4.1.0-10.fc37.x86_64 95/137 Verifying : ncurses-base-6.3-3.20220501.fc37.noarch 96/137 Verifying : ncurses-libs-6.3-3.20220501.fc37.x86_64 97/137 Verifying : nettle-3.8-2.fc37.x86_64 98/137 Verifying : npth-1.6-9.fc37.x86_64 99/137 Verifying : openldap-2.6.2-5.fc38.x86_64 100/137 Verifying : openssl-libs-1:3.0.5-2.fc37.x86_64 101/137 Verifying : p11-kit-0.24.1-3.fc37.x86_64 102/137 Verifying : p11-kit-trust-0.24.1-3.fc37.x86_64 103/137 Verifying : pcre-8.45-1.fc37.2.x86_64 104/137 Verifying : pcre2-10.40-1.fc37.1.x86_64 105/137 Verifying : pcre2-syntax-10.40-1.fc37.1.noarch 106/137 Verifying : popt-1.19~rc1-3.fc37.x86_64 107/137 Verifying : publicsuffix-list-dafsa-20210518-5.fc37.noarch 108/137 Verifying : python-pip-wheel-22.2-1.fc37.noarch 109/137 Verifying : python3-3.11.0~rc1-1.fc38.x86_64 110/137 Verifying : python3-dateutil-1:2.8.2-4.fc37.noarch 111/137 Verifying : python3-dbus-1.2.18-5.fc37.x86_64 112/137 Verifying : python3-distro-1.7.0-3.fc37.noarch 113/137 Verifying : python3-dnf-4.13.0-3.fc37.noarch 114/137 Verifying : python3-dnf-plugins-core-4.2.1-3.fc37.noarch 115/137 Verifying : python3-gpg-1.17.0-4.fc37.x86_64 116/137 Verifying : python3-hawkey-0.67.0-4.fc37.x86_64 117/137 Verifying : python3-libcomps-0.1.18-4.fc37.x86_64 118/137 Verifying : python3-libdnf-0.67.0-4.fc37.x86_64 119/137 Verifying : python3-libs-3.11.0~rc1-1.fc38.x86_64 120/137 Verifying : python3-rpm-4.18.0-0.beta1.4.fc37.x86_64 121/137 Verifying : python3-six-1.16.0-8.fc37.noarch 122/137 Verifying : readline-8.1-7.fc37.x86_64 123/137 Verifying : rpm-4.18.0-0.beta1.4.fc37.x86_64 124/137 Verifying : rpm-build-libs-4.18.0-0.beta1.4.fc37.x86_64 125/137 Verifying : rpm-libs-4.18.0-0.beta1.4.fc37.x86_64 126/137 Verifying : rpm-sign-libs-4.18.0-0.beta1.4.fc37.x86_64 127/137 Verifying : sed-4.8-11.fc37.x86_64 128/137 Verifying : setup-2.14.1-2.fc37.noarch 129/137 Verifying : shadow-utils-2:4.11.1-4.fc37.x86_64 130/137 Verifying : sqlite-libs-3.39.2-2.fc37.x86_64 131/137 Verifying : systemd-libs-251.4-51.fc37.x86_64 132/137 Verifying : tpm2-tss-3.2.0-3.fc37.x86_64 133/137 Verifying : tzdata-2022b-1.fc38.noarch 134/137 Verifying : xz-libs-5.2.5-10.fc37.x86_64 135/137 Verifying : zchunk-libs-1.2.2-2.fc37.x86_64 136/137 Verifying : zlib-1.2.12-4.fc37.x86_64 137/137 Installed products updated. Installed: alternatives-1.19-3.fc37.x86_64 audit-libs-3.0.8-3.fc37.x86_64 basesystem-11-14.fc37.noarch bash-5.1.16-3.fc37.x86_64 bzip2-libs-1.0.8-12.fc37.x86_64 ca-certificates-2022.2.54-5.fc37.noarch coreutils-9.1-6.fc37.x86_64 coreutils-common-9.1-6.fc37.x86_64 crypto-policies-20220802-1.gita99dfd2.fc37.noarch curl-7.84.0-2.fc37.x86_64 cyrus-sasl-lib-2.1.28-7.fc37.x86_64 dbus-libs-1:1.14.0-3.fc37.x86_64 dnf-4.13.0-3.fc37.noarch dnf-data-4.13.0-3.fc37.noarch dnf-plugins-core-4.2.1-3.fc37.noarch elfutils-default-yama-scope-0.187-6.fc37.noarch elfutils-libelf-0.187-6.fc37.x86_64 elfutils-libs-0.187-6.fc37.x86_64 expat-2.4.8-2.fc37.x86_64 fedora-gpg-keys-38-0.2.noarch fedora-release-38-0.2.noarch fedora-release-common-38-0.2.noarch fedora-release-identity-basic-38-0.2.noarch fedora-repos-38-0.2.noarch fedora-repos-rawhide-38-0.2.noarch file-libs-5.42-4.fc37.x86_64 filesystem-3.18-2.fc37.x86_64 findutils-1:4.9.0-2.fc37.x86_64 gawk-5.1.1-4.fc37.x86_64 gdbm-libs-1:1.23-2.fc37.x86_64 glib2-2.73.2-7.fc37.x86_64 glibc-2.36-1.fc37.x86_64 glibc-common-2.36-1.fc37.x86_64 glibc-minimal-langpack-2.36-1.fc37.x86_64 gmp-1:6.2.1-3.fc37.x86_64 gnupg2-2.3.7-3.fc37.x86_64 gnutls-3.7.7-1.fc37.x86_64 gpgme-1.17.0-4.fc37.x86_64 grep-3.7-4.fc37.x86_64 ima-evm-utils-1.4-6.fc37.x86_64 json-c-0.16-2.fc37.x86_64 keyutils-libs-1.6.1-5.fc37.x86_64 krb5-libs-1.19.2-11.fc37.1.x86_64 libacl-2.3.1-4.fc37.x86_64 libarchive-3.6.1-2.fc37.x86_64 libassuan-2.5.5-5.fc37.x86_64 libattr-2.5.1-5.fc37.x86_64 libb2-0.98.1-7.fc37.x86_64 libblkid-2.38.1-1.fc37.x86_64 libbrotli-1.0.9-9.fc38.x86_64 libcap-2.48-5.fc37.x86_64 libcap-ng-0.8.3-3.fc37.x86_64 libcom_err-1.46.5-3.fc37.x86_64 libcomps-0.1.18-4.fc37.x86_64 libcurl-7.84.0-2.fc37.x86_64 libdnf-0.67.0-4.fc37.x86_64 libevent-2.1.12-7.fc37.x86_64 libffi-3.4.2-9.fc37.x86_64 libfsverity-1.4-8.fc37.x86_64 libgcc-12.1.1-4.fc38.x86_64 libgcrypt-1.10.1-4.fc37.x86_64 libgomp-12.1.1-4.fc38.x86_64 libgpg-error-1.45-2.fc37.x86_64 libidn2-2.3.3-2.fc37.x86_64 libksba-1.6.0-4.fc37.x86_64 libmodulemd-2.14.0-4.fc37.x86_64 libmount-2.38.1-1.fc37.x86_64 libnghttp2-1.48.0-2.fc37.x86_64 libnsl2-2.0.0-4.fc37.x86_64 libpsl-0.21.1-6.fc37.x86_64 librepo-1.14.3-3.fc37.x86_64 libreport-filesystem-2.17.1-3.fc37.noarch libselinux-3.4-5.fc37.x86_64 libsemanage-3.4-5.fc37.x86_64 libsepol-3.4-3.fc37.x86_64 libsigsegv-2.14-3.fc37.x86_64 libsmartcols-2.38.1-1.fc37.x86_64 libsolv-0.7.22-3.fc37.x86_64 libssh-0.9.6-5.fc37.x86_64 libssh-config-0.9.6-5.fc37.noarch libstdc++-12.1.1-4.fc38.x86_64 libtasn1-4.18.0-3.fc37.x86_64 libtirpc-1.3.3-0.fc37.x86_64 libunistring-1.0-2.fc37.x86_64 libuuid-2.38.1-1.fc37.x86_64 libverto-0.3.2-4.fc37.x86_64 libxcrypt-4.4.28-3.fc38.x86_64 libxml2-2.9.14-3.fc37.x86_64 libyaml-0.2.5-8.fc37.x86_64 libzstd-1.5.2-3.fc37.x86_64 lua-libs-5.4.4-4.fc37.x86_64 lz4-libs-1.9.3-5.fc37.x86_64 mpdecimal-2.5.1-4.fc37.x86_64 mpfr-4.1.0-10.fc37.x86_64 ncurses-base-6.3-3.20220501.fc37.noarch ncurses-libs-6.3-3.20220501.fc37.x86_64 nettle-3.8-2.fc37.x86_64 npth-1.6-9.fc37.x86_64 openldap-2.6.2-5.fc38.x86_64 openssl-libs-1:3.0.5-2.fc37.x86_64 p11-kit-0.24.1-3.fc37.x86_64 p11-kit-trust-0.24.1-3.fc37.x86_64 pcre-8.45-1.fc37.2.x86_64 pcre2-10.40-1.fc37.1.x86_64 pcre2-syntax-10.40-1.fc37.1.noarch popt-1.19~rc1-3.fc37.x86_64 publicsuffix-list-dafsa-20210518-5.fc37.noarch python-pip-wheel-22.2-1.fc37.noarch python-setuptools-wheel-65.0.1-1.fc38.noarch python3-3.11.0~rc1-1.fc38.x86_64 python3-dateutil-1:2.8.2-4.fc37.noarch python3-dbus-1.2.18-5.fc37.x86_64 python3-distro-1.7.0-3.fc37.noarch python3-dnf-4.13.0-3.fc37.noarch python3-dnf-plugins-core-4.2.1-3.fc37.noarch python3-gpg-1.17.0-4.fc37.x86_64 python3-hawkey-0.67.0-4.fc37.x86_64 python3-libcomps-0.1.18-4.fc37.x86_64 python3-libdnf-0.67.0-4.fc37.x86_64 python3-libs-3.11.0~rc1-1.fc38.x86_64 python3-rpm-4.18.0-0.beta1.4.fc37.x86_64 python3-six-1.16.0-8.fc37.noarch readline-8.1-7.fc37.x86_64 rpm-4.18.0-0.beta1.4.fc37.x86_64 rpm-build-libs-4.18.0-0.beta1.4.fc37.x86_64 rpm-libs-4.18.0-0.beta1.4.fc37.x86_64 rpm-sign-libs-4.18.0-0.beta1.4.fc37.x86_64 sed-4.8-11.fc37.x86_64 setup-2.14.1-2.fc37.noarch shadow-utils-2:4.11.1-4.fc37.x86_64 sqlite-libs-3.39.2-2.fc37.x86_64 systemd-libs-251.4-51.fc37.x86_64 tpm2-tss-3.2.0-3.fc37.x86_64 tzdata-2022b-1.fc38.noarch xz-libs-5.2.5-10.fc37.x86_64 zchunk-libs-1.2.2-2.fc37.x86_64 zlib-1.2.12-4.fc37.x86_64 Complete! Finish(bootstrap): dnf install Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1660636830.872585/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 3.1 INFO: Mock Version: 3.1 Start: dnf install No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 61 kB/s | 3.0 kB 00:00 Copr repository 2.2 MB/s | 299 kB 00:00 fedora 156 kB/s | 16 kB 00:00 Dependencies resolved. ================================================================================ Package Arch Version Repo Size ================================================================================ Installing group/module packages: bash x86_64 5.1.16-3.fc37 fedora 1.7 M bzip2 x86_64 1.0.8-12.fc37 fedora 52 k coreutils x86_64 9.1-6.fc37 fedora 1.1 M cpio x86_64 2.13-13.fc37 fedora 277 k diffutils x86_64 3.8-3.fc37 fedora 378 k fedora-release-common noarch 38-0.2 fedora 22 k findutils x86_64 1:4.9.0-2.fc37 fedora 492 k gawk x86_64 5.1.1-4.fc37 fedora 1.0 M glibc-minimal-langpack x86_64 2.36-1.fc37 fedora 81 k grep x86_64 3.7-4.fc37 fedora 273 k gzip x86_64 1.12-2.fc37 fedora 166 k info x86_64 6.8-4.fc37 fedora 225 k patch x86_64 2.7.6-17.fc37 fedora 124 k redhat-rpm-config noarch 227-1.fc37 fedora 80 k rpm-build x86_64 4.18.0-0.beta1.4.fc37 fedora 76 k sed x86_64 4.8-11.fc37 fedora 306 k shadow-utils x86_64 2:4.11.1-4.fc37 fedora 1.1 M tar x86_64 2:1.34-3.fc36 fedora 886 k unzip x86_64 6.0-58.fc37 fedora 182 k util-linux x86_64 2.38.1-1.fc37 fedora 2.3 M which x86_64 2.21-35.fc37 fedora 41 k xz x86_64 5.2.5-10.fc37 fedora 223 k Installing dependencies: alternatives x86_64 1.19-3.fc37 fedora 36 k ansible-srpm-macros noarch 1-6.fc37 fedora 7.5 k audit-libs x86_64 3.0.8-3.fc37 fedora 116 k authselect x86_64 1.4.0-3.fc37 fedora 144 k authselect-libs x86_64 1.4.0-3.fc37 fedora 248 k basesystem noarch 11-14.fc37 fedora 7.0 k binutils x86_64 2.38-24.fc38 fedora 5.4 M binutils-gold x86_64 2.38-24.fc38 fedora 777 k bzip2-libs x86_64 1.0.8-12.fc37 fedora 41 k ca-certificates noarch 2022.2.54-5.fc37 fedora 829 k coreutils-common x86_64 9.1-6.fc37 fedora 2.0 M cracklib x86_64 2.9.6-28.fc36 fedora 92 k crypto-policies noarch 20220802-1.gita99dfd2.fc37 fedora 86 k curl x86_64 7.84.0-2.fc37 fedora 313 k cyrus-sasl-lib x86_64 2.1.28-7.fc37 fedora 792 k debugedit x86_64 5.0-5.fc37 fedora 77 k dwz x86_64 0.14-7.fc37 fedora 129 k ed x86_64 1.18-2.fc37 fedora 78 k efi-srpm-macros noarch 5-6.fc37 fedora 22 k elfutils x86_64 0.187-6.fc37 fedora 528 k elfutils-debuginfod-client x86_64 0.187-6.fc37 fedora 39 k elfutils-default-yama-scope noarch 0.187-6.fc37 fedora 17 k elfutils-libelf x86_64 0.187-6.fc37 fedora 197 k elfutils-libs x86_64 0.187-6.fc37 fedora 257 k fedora-gpg-keys noarch 38-0.2 fedora 125 k fedora-release noarch 38-0.2 fedora 12 k fedora-release-identity-basic noarch 38-0.2 fedora 12 k fedora-repos noarch 38-0.2 fedora 10 k fedora-repos-rawhide noarch 38-0.2 fedora 9.6 k file x86_64 5.42-4.fc37 fedora 49 k file-libs x86_64 5.42-4.fc37 fedora 676 k filesystem x86_64 3.18-2.fc37 fedora 1.1 M fonts-srpm-macros noarch 1:2.0.5-8.fc37 fedora 26 k fpc-srpm-macros noarch 1.3-6.fc37 fedora 7.7 k gdb-minimal x86_64 12.1-4.fc37 fedora 3.9 M gdbm-libs x86_64 1:1.23-2.fc37 fedora 56 k ghc-srpm-macros noarch 1.5.0-7.fc37 fedora 7.8 k glibc x86_64 2.36-1.fc37 fedora 2.1 M glibc-common x86_64 2.36-1.fc37 fedora 359 k glibc-gconv-extra x86_64 2.36-1.fc37 fedora 1.6 M gmp x86_64 1:6.2.1-3.fc37 fedora 315 k gnat-srpm-macros noarch 4-16.fc37 fedora 8.3 k go-srpm-macros noarch 3.1.0-4.fc37 fedora 27 k jansson x86_64 2.13.1-5.fc37 fedora 44 k kernel-srpm-macros noarch 1.0-15.fc37 fedora 9.4 k keyutils-libs x86_64 1.6.1-5.fc37 fedora 31 k krb5-libs x86_64 1.19.2-11.fc37.1 fedora 727 k libacl x86_64 2.3.1-4.fc37 fedora 23 k libarchive x86_64 3.6.1-2.fc37 fedora 397 k libattr x86_64 2.5.1-5.fc37 fedora 18 k libblkid x86_64 2.38.1-1.fc37 fedora 107 k libbrotli x86_64 1.0.9-9.fc38 copr_base 316 k libcap x86_64 2.48-5.fc37 fedora 67 k libcap-ng x86_64 0.8.3-3.fc37 fedora 33 k libcom_err x86_64 1.46.5-3.fc37 fedora 25 k libcurl x86_64 7.84.0-2.fc37 fedora 306 k libdb x86_64 5.3.28-53.fc37 fedora 760 k libeconf x86_64 0.4.0-4.fc37 fedora 27 k libevent x86_64 2.1.12-7.fc37 fedora 261 k libfdisk x86_64 2.38.1-1.fc37 fedora 160 k libffi x86_64 3.4.2-9.fc37 fedora 37 k libgcc x86_64 12.1.1-4.fc38 fedora 106 k libgomp x86_64 12.1.1-4.fc38 fedora 293 k libidn2 x86_64 2.3.3-2.fc37 fedora 113 k libmount x86_64 2.38.1-1.fc37 fedora 135 k libnghttp2 x86_64 1.48.0-2.fc37 fedora 75 k libnsl2 x86_64 2.0.0-4.fc37 fedora 30 k libpkgconf x86_64 1.8.0-3.fc37 fedora 36 k libpsl x86_64 0.21.1-6.fc37 fedora 63 k libpwquality x86_64 1.4.4-11.fc37 fedora 116 k libselinux x86_64 3.4-5.fc37 fedora 86 k libsemanage x86_64 3.4-5.fc37 fedora 120 k libsepol x86_64 3.4-3.fc37 fedora 322 k libsigsegv x86_64 2.14-3.fc37 fedora 27 k libsmartcols x86_64 2.38.1-1.fc37 fedora 64 k libssh x86_64 0.9.6-5.fc37 fedora 203 k libssh-config noarch 0.9.6-5.fc37 fedora 7.8 k libstdc++ x86_64 12.1.1-4.fc38 fedora 798 k libtasn1 x86_64 4.18.0-3.fc37 fedora 75 k libtirpc x86_64 1.3.3-0.fc37 fedora 93 k libunistring x86_64 1.0-2.fc37 fedora 549 k libutempter x86_64 1.2.1-7.fc37 fedora 26 k libuuid x86_64 2.38.1-1.fc37 fedora 28 k libverto x86_64 0.3.2-4.fc37 fedora 21 k libxcrypt x86_64 4.4.28-3.fc38 fedora 117 k libxml2 x86_64 2.9.14-3.fc37 fedora 752 k libzstd x86_64 1.5.2-3.fc37 fedora 294 k lua-libs x86_64 5.4.4-4.fc37 fedora 217 k lua-srpm-macros noarch 1-7.fc37 fedora 8.8 k lz4-libs x86_64 1.9.3-5.fc37 fedora 70 k mpfr x86_64 4.1.0-10.fc37 fedora 331 k ncurses-base noarch 6.3-3.20220501.fc37 fedora 86 k ncurses-libs x86_64 6.3-3.20220501.fc37 fedora 329 k nim-srpm-macros noarch 3-7.fc37 fedora 8.4 k ocaml-srpm-macros noarch 7-2.fc37 fedora 13 k openblas-srpm-macros noarch 2-12.fc37 fedora 7.5 k openldap x86_64 2.6.2-5.fc38 fedora 254 k openssl-libs x86_64 1:3.0.5-2.fc37 fedora 2.1 M p11-kit x86_64 0.24.1-3.fc37 fedora 376 k p11-kit-trust x86_64 0.24.1-3.fc37 fedora 138 k package-notes-srpm-macros noarch 0.4-16.fc37 fedora 11 k pam x86_64 1.5.2-14.fc37 fedora 560 k pam-libs x86_64 1.5.2-14.fc37 fedora 58 k pcre x86_64 8.45-1.fc37.2 fedora 202 k pcre2 x86_64 10.40-1.fc37.1 fedora 236 k pcre2-syntax noarch 10.40-1.fc37.1 fedora 142 k perl-srpm-macros noarch 1-46.fc37 fedora 8.3 k pkgconf x86_64 1.8.0-3.fc37 fedora 41 k pkgconf-m4 noarch 1.8.0-3.fc37 fedora 14 k pkgconf-pkg-config x86_64 1.8.0-3.fc37 fedora 10 k popt x86_64 1.19~rc1-3.fc37 fedora 65 k publicsuffix-list-dafsa noarch 20210518-5.fc37 fedora 58 k python-srpm-macros noarch 3.11-4.fc37 fedora 25 k qt5-srpm-macros noarch 5.15.5-2.fc37 fedora 8.1 k readline x86_64 8.1-7.fc37 fedora 211 k rpm x86_64 4.18.0-0.beta1.4.fc37 fedora 570 k rpm-build-libs x86_64 4.18.0-0.beta1.4.fc37 fedora 93 k rpm-libs x86_64 4.18.0-0.beta1.4.fc37 fedora 319 k rpmautospec-rpm-macros noarch 0.3.0-1.fc37 fedora 8.8 k rust-srpm-macros noarch 22-1.fc37 fedora 9.5 k setup noarch 2.14.1-2.fc37 fedora 149 k sqlite-libs x86_64 3.39.2-2.fc37 fedora 657 k systemd-libs x86_64 251.4-51.fc37 fedora 620 k tzdata noarch 2022b-1.fc38 fedora 717 k util-linux-core x86_64 2.38.1-1.fc37 fedora 470 k xxhash-libs x86_64 0.8.1-3.fc37 fedora 41 k xz-libs x86_64 5.2.5-10.fc37 fedora 92 k zip x86_64 3.0-33.fc37 fedora 259 k zlib x86_64 1.2.12-4.fc37 fedora 94 k zstd x86_64 1.5.2-3.fc37 fedora 447 k Installing Groups: Buildsystem building group Transaction Summary ================================================================================ Install 152 Packages Total size: 51 M Installed size: 177 M Downloading Packages: [SKIPPED] libbrotli-1.0.9-9.fc38.x86_64.rpm: Already downloaded [SKIPPED] alternatives-1.19-3.fc37.x86_64.rpm: Already downloaded [SKIPPED] ansible-srpm-macros-1-6.fc37.noarch.rpm: Already downloaded [SKIPPED] audit-libs-3.0.8-3.fc37.x86_64.rpm: Already downloaded [SKIPPED] authselect-1.4.0-3.fc37.x86_64.rpm: Already downloaded [SKIPPED] authselect-libs-1.4.0-3.fc37.x86_64.rpm: Already downloaded [SKIPPED] basesystem-11-14.fc37.noarch.rpm: Already downloaded [SKIPPED] bash-5.1.16-3.fc37.x86_64.rpm: Already downloaded [SKIPPED] binutils-2.38-24.fc38.x86_64.rpm: Already downloaded [SKIPPED] binutils-gold-2.38-24.fc38.x86_64.rpm: Already downloaded [SKIPPED] bzip2-1.0.8-12.fc37.x86_64.rpm: Already downloaded [SKIPPED] bzip2-libs-1.0.8-12.fc37.x86_64.rpm: Already downloaded [SKIPPED] ca-certificates-2022.2.54-5.fc37.noarch.rpm: Already downloaded [SKIPPED] coreutils-9.1-6.fc37.x86_64.rpm: Already downloaded [SKIPPED] coreutils-common-9.1-6.fc37.x86_64.rpm: Already downloaded [SKIPPED] cpio-2.13-13.fc37.x86_64.rpm: Already downloaded [SKIPPED] cracklib-2.9.6-28.fc36.x86_64.rpm: Already downloaded [SKIPPED] crypto-policies-20220802-1.gita99dfd2.fc37.noarch.rpm: Already downloaded [SKIPPED] curl-7.84.0-2.fc37.x86_64.rpm: Already downloaded [SKIPPED] cyrus-sasl-lib-2.1.28-7.fc37.x86_64.rpm: Already downloaded [SKIPPED] debugedit-5.0-5.fc37.x86_64.rpm: Already downloaded [SKIPPED] diffutils-3.8-3.fc37.x86_64.rpm: Already downloaded [SKIPPED] dwz-0.14-7.fc37.x86_64.rpm: Already downloaded [SKIPPED] ed-1.18-2.fc37.x86_64.rpm: Already downloaded [SKIPPED] efi-srpm-macros-5-6.fc37.noarch.rpm: Already downloaded [SKIPPED] elfutils-0.187-6.fc37.x86_64.rpm: Already downloaded [SKIPPED] elfutils-debuginfod-client-0.187-6.fc37.x86_64.rpm: Already downloaded [SKIPPED] elfutils-default-yama-scope-0.187-6.fc37.noarch.rpm: Already downloaded [SKIPPED] elfutils-libelf-0.187-6.fc37.x86_64.rpm: Already downloaded [SKIPPED] elfutils-libs-0.187-6.fc37.x86_64.rpm: Already downloaded [SKIPPED] fedora-gpg-keys-38-0.2.noarch.rpm: Already downloaded [SKIPPED] fedora-release-38-0.2.noarch.rpm: Already downloaded [SKIPPED] fedora-release-common-38-0.2.noarch.rpm: Already downloaded [SKIPPED] fedora-release-identity-basic-38-0.2.noarch.rpm: Already downloaded [SKIPPED] fedora-repos-38-0.2.noarch.rpm: Already downloaded [SKIPPED] fedora-repos-rawhide-38-0.2.noarch.rpm: Already downloaded [SKIPPED] file-5.42-4.fc37.x86_64.rpm: Already downloaded [SKIPPED] file-libs-5.42-4.fc37.x86_64.rpm: Already downloaded [SKIPPED] filesystem-3.18-2.fc37.x86_64.rpm: Already downloaded [SKIPPED] findutils-4.9.0-2.fc37.x86_64.rpm: Already downloaded [SKIPPED] fonts-srpm-macros-2.0.5-8.fc37.noarch.rpm: Already downloaded [SKIPPED] fpc-srpm-macros-1.3-6.fc37.noarch.rpm: Already downloaded [SKIPPED] gawk-5.1.1-4.fc37.x86_64.rpm: Already downloaded [SKIPPED] gdb-minimal-12.1-4.fc37.x86_64.rpm: Already downloaded [SKIPPED] gdbm-libs-1.23-2.fc37.x86_64.rpm: Already downloaded [SKIPPED] ghc-srpm-macros-1.5.0-7.fc37.noarch.rpm: Already downloaded [SKIPPED] glibc-2.36-1.fc37.x86_64.rpm: Already downloaded [SKIPPED] glibc-common-2.36-1.fc37.x86_64.rpm: Already downloaded [SKIPPED] glibc-gconv-extra-2.36-1.fc37.x86_64.rpm: Already downloaded [SKIPPED] glibc-minimal-langpack-2.36-1.fc37.x86_64.rpm: Already downloaded [SKIPPED] gmp-6.2.1-3.fc37.x86_64.rpm: Already downloaded [SKIPPED] gnat-srpm-macros-4-16.fc37.noarch.rpm: Already downloaded [SKIPPED] go-srpm-macros-3.1.0-4.fc37.noarch.rpm: Already downloaded [SKIPPED] grep-3.7-4.fc37.x86_64.rpm: Already downloaded [SKIPPED] gzip-1.12-2.fc37.x86_64.rpm: Already downloaded [SKIPPED] info-6.8-4.fc37.x86_64.rpm: Already downloaded [SKIPPED] jansson-2.13.1-5.fc37.x86_64.rpm: Already downloaded [SKIPPED] kernel-srpm-macros-1.0-15.fc37.noarch.rpm: Already downloaded [SKIPPED] keyutils-libs-1.6.1-5.fc37.x86_64.rpm: Already downloaded [SKIPPED] krb5-libs-1.19.2-11.fc37.1.x86_64.rpm: Already downloaded [SKIPPED] libacl-2.3.1-4.fc37.x86_64.rpm: Already downloaded [SKIPPED] libarchive-3.6.1-2.fc37.x86_64.rpm: Already downloaded [SKIPPED] libattr-2.5.1-5.fc37.x86_64.rpm: Already downloaded [SKIPPED] libblkid-2.38.1-1.fc37.x86_64.rpm: Already downloaded [SKIPPED] libcap-2.48-5.fc37.x86_64.rpm: Already downloaded [SKIPPED] libcap-ng-0.8.3-3.fc37.x86_64.rpm: Already downloaded [SKIPPED] libcom_err-1.46.5-3.fc37.x86_64.rpm: Already downloaded [SKIPPED] libcurl-7.84.0-2.fc37.x86_64.rpm: Already downloaded [SKIPPED] libdb-5.3.28-53.fc37.x86_64.rpm: Already downloaded [SKIPPED] libeconf-0.4.0-4.fc37.x86_64.rpm: Already downloaded [SKIPPED] libevent-2.1.12-7.fc37.x86_64.rpm: Already downloaded [SKIPPED] libfdisk-2.38.1-1.fc37.x86_64.rpm: Already downloaded [SKIPPED] libffi-3.4.2-9.fc37.x86_64.rpm: Already downloaded [SKIPPED] libgcc-12.1.1-4.fc38.x86_64.rpm: Already downloaded [SKIPPED] libgomp-12.1.1-4.fc38.x86_64.rpm: Already downloaded [SKIPPED] libidn2-2.3.3-2.fc37.x86_64.rpm: Already downloaded [SKIPPED] libmount-2.38.1-1.fc37.x86_64.rpm: Already downloaded [SKIPPED] libnghttp2-1.48.0-2.fc37.x86_64.rpm: Already downloaded [SKIPPED] libnsl2-2.0.0-4.fc37.x86_64.rpm: Already downloaded [SKIPPED] libpkgconf-1.8.0-3.fc37.x86_64.rpm: Already downloaded [SKIPPED] libpsl-0.21.1-6.fc37.x86_64.rpm: Already downloaded [SKIPPED] libpwquality-1.4.4-11.fc37.x86_64.rpm: Already downloaded [SKIPPED] libselinux-3.4-5.fc37.x86_64.rpm: Already downloaded [SKIPPED] libsemanage-3.4-5.fc37.x86_64.rpm: Already downloaded [SKIPPED] libsepol-3.4-3.fc37.x86_64.rpm: Already downloaded [SKIPPED] libsigsegv-2.14-3.fc37.x86_64.rpm: Already downloaded [SKIPPED] libsmartcols-2.38.1-1.fc37.x86_64.rpm: Already downloaded [SKIPPED] libssh-0.9.6-5.fc37.x86_64.rpm: Already downloaded [SKIPPED] libssh-config-0.9.6-5.fc37.noarch.rpm: Already downloaded [SKIPPED] libstdc++-12.1.1-4.fc38.x86_64.rpm: Already downloaded [SKIPPED] libtasn1-4.18.0-3.fc37.x86_64.rpm: Already downloaded [SKIPPED] libtirpc-1.3.3-0.fc37.x86_64.rpm: Already downloaded [SKIPPED] libunistring-1.0-2.fc37.x86_64.rpm: Already downloaded [SKIPPED] libutempter-1.2.1-7.fc37.x86_64.rpm: Already downloaded [SKIPPED] libuuid-2.38.1-1.fc37.x86_64.rpm: Already downloaded [SKIPPED] libverto-0.3.2-4.fc37.x86_64.rpm: Already downloaded [SKIPPED] libxcrypt-4.4.28-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] libxml2-2.9.14-3.fc37.x86_64.rpm: Already downloaded [SKIPPED] libzstd-1.5.2-3.fc37.x86_64.rpm: Already downloaded [SKIPPED] lua-libs-5.4.4-4.fc37.x86_64.rpm: Already downloaded [SKIPPED] lua-srpm-macros-1-7.fc37.noarch.rpm: Already downloaded [SKIPPED] lz4-libs-1.9.3-5.fc37.x86_64.rpm: Already downloaded [SKIPPED] mpfr-4.1.0-10.fc37.x86_64.rpm: Already downloaded [SKIPPED] ncurses-base-6.3-3.20220501.fc37.noarch.rpm: Already downloaded [SKIPPED] ncurses-libs-6.3-3.20220501.fc37.x86_64.rpm: Already downloaded [SKIPPED] nim-srpm-macros-3-7.fc37.noarch.rpm: Already downloaded [SKIPPED] ocaml-srpm-macros-7-2.fc37.noarch.rpm: Already downloaded [SKIPPED] openblas-srpm-macros-2-12.fc37.noarch.rpm: Already downloaded [SKIPPED] openldap-2.6.2-5.fc38.x86_64.rpm: Already downloaded [SKIPPED] openssl-libs-3.0.5-2.fc37.x86_64.rpm: Already downloaded [SKIPPED] p11-kit-0.24.1-3.fc37.x86_64.rpm: Already downloaded [SKIPPED] p11-kit-trust-0.24.1-3.fc37.x86_64.rpm: Already downloaded [SKIPPED] package-notes-srpm-macros-0.4-16.fc37.noarch.rpm: Already downloaded [SKIPPED] pam-1.5.2-14.fc37.x86_64.rpm: Already downloaded [SKIPPED] pam-libs-1.5.2-14.fc37.x86_64.rpm: Already downloaded [SKIPPED] patch-2.7.6-17.fc37.x86_64.rpm: Already downloaded [SKIPPED] pcre-8.45-1.fc37.2.x86_64.rpm: Already downloaded [SKIPPED] pcre2-10.40-1.fc37.1.x86_64.rpm: Already downloaded [SKIPPED] pcre2-syntax-10.40-1.fc37.1.noarch.rpm: Already downloaded [SKIPPED] perl-srpm-macros-1-46.fc37.noarch.rpm: Already downloaded [SKIPPED] pkgconf-1.8.0-3.fc37.x86_64.rpm: Already downloaded [SKIPPED] pkgconf-m4-1.8.0-3.fc37.noarch.rpm: Already downloaded [SKIPPED] pkgconf-pkg-config-1.8.0-3.fc37.x86_64.rpm: Already downloaded [SKIPPED] popt-1.19~rc1-3.fc37.x86_64.rpm: Already downloaded [SKIPPED] publicsuffix-list-dafsa-20210518-5.fc37.noarch.rpm: Already downloaded [SKIPPED] python-srpm-macros-3.11-4.fc37.noarch.rpm: Already downloaded [SKIPPED] qt5-srpm-macros-5.15.5-2.fc37.noarch.rpm: Already downloaded [SKIPPED] readline-8.1-7.fc37.x86_64.rpm: Already downloaded [SKIPPED] redhat-rpm-config-227-1.fc37.noarch.rpm: Already downloaded [SKIPPED] rpm-4.18.0-0.beta1.4.fc37.x86_64.rpm: Already downloaded [SKIPPED] rpm-build-4.18.0-0.beta1.4.fc37.x86_64.rpm: Already downloaded [SKIPPED] rpm-build-libs-4.18.0-0.beta1.4.fc37.x86_64.rpm: Already downloaded [SKIPPED] rpm-libs-4.18.0-0.beta1.4.fc37.x86_64.rpm: Already downloaded [SKIPPED] rpmautospec-rpm-macros-0.3.0-1.fc37.noarch.rpm: Already downloaded [SKIPPED] rust-srpm-macros-22-1.fc37.noarch.rpm: Already downloaded [SKIPPED] sed-4.8-11.fc37.x86_64.rpm: Already downloaded [SKIPPED] setup-2.14.1-2.fc37.noarch.rpm: Already downloaded [SKIPPED] shadow-utils-4.11.1-4.fc37.x86_64.rpm: Already downloaded [SKIPPED] sqlite-libs-3.39.2-2.fc37.x86_64.rpm: Already downloaded [SKIPPED] systemd-libs-251.4-51.fc37.x86_64.rpm: Already downloaded [SKIPPED] tar-1.34-3.fc36.x86_64.rpm: Already downloaded [SKIPPED] tzdata-2022b-1.fc38.noarch.rpm: Already downloaded [SKIPPED] unzip-6.0-58.fc37.x86_64.rpm: Already downloaded [SKIPPED] util-linux-2.38.1-1.fc37.x86_64.rpm: Already downloaded [SKIPPED] util-linux-core-2.38.1-1.fc37.x86_64.rpm: Already downloaded [SKIPPED] which-2.21-35.fc37.x86_64.rpm: Already downloaded [SKIPPED] xxhash-libs-0.8.1-3.fc37.x86_64.rpm: Already downloaded [SKIPPED] xz-5.2.5-10.fc37.x86_64.rpm: Already downloaded [SKIPPED] xz-libs-5.2.5-10.fc37.x86_64.rpm: Already downloaded [SKIPPED] zip-3.0-33.fc37.x86_64.rpm: Already downloaded [SKIPPED] zlib-1.2.12-4.fc37.x86_64.rpm: Already downloaded [SKIPPED] zstd-1.5.2-3.fc37.x86_64.rpm: Already downloaded fedora 1.6 MB/s | 1.6 kB 00:00 Importing GPG key 0xEB10B464: Userid : "Fedora (38) " Fingerprint: 6A51 BBAB BA3D 5467 B617 1221 809A 8D7C EB10 B464 From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-38-primary Key imported successfully fedora 1.6 MB/s | 1.6 kB 00:00 GPG key at file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-38-primary (0xEB10B464) is already installed fedora 1.6 MB/s | 1.6 kB 00:00 Importing GPG key 0x5323552A: Userid : "Fedora (37) " Fingerprint: ACB5 EE4E 831C 74BB 7C16 8D27 F55A D3FB 5323 552A From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-37-primary Key imported successfully Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Running scriptlet: filesystem-3.18-2.fc37.x86_64 1/1 Preparing : 1/1 Installing : libgcc-12.1.1-4.fc38.x86_64 1/152 Running scriptlet: libgcc-12.1.1-4.fc38.x86_64 1/152 Installing : crypto-policies-20220802-1.gita99dfd2.fc37.noarc 2/152 Running scriptlet: crypto-policies-20220802-1.gita99dfd2.fc37.noarc 2/152 Installing : fedora-release-identity-basic-38-0.2.noarch 3/152 Installing : tzdata-2022b-1.fc38.noarch 4/152 Installing : rust-srpm-macros-22-1.fc37.noarch 5/152 Installing : qt5-srpm-macros-5.15.5-2.fc37.noarch 6/152 Installing : publicsuffix-list-dafsa-20210518-5.fc37.noarch 7/152 Installing : pkgconf-m4-1.8.0-3.fc37.noarch 8/152 Installing : perl-srpm-macros-1-46.fc37.noarch 9/152 Installing : pcre2-syntax-10.40-1.fc37.1.noarch 10/152 Installing : openblas-srpm-macros-2-12.fc37.noarch 11/152 Installing : ocaml-srpm-macros-7-2.fc37.noarch 12/152 Installing : nim-srpm-macros-3-7.fc37.noarch 13/152 Installing : ncurses-base-6.3-3.20220501.fc37.noarch 14/152 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libutempter-1.2.1-7.fc37.x86_64 94/152 Verifying : libuuid-2.38.1-1.fc37.x86_64 95/152 Verifying : libverto-0.3.2-4.fc37.x86_64 96/152 Verifying : libxcrypt-4.4.28-3.fc38.x86_64 97/152 Verifying : libxml2-2.9.14-3.fc37.x86_64 98/152 Verifying : libzstd-1.5.2-3.fc37.x86_64 99/152 Verifying : lua-libs-5.4.4-4.fc37.x86_64 100/152 Verifying : lua-srpm-macros-1-7.fc37.noarch 101/152 Verifying : lz4-libs-1.9.3-5.fc37.x86_64 102/152 Verifying : mpfr-4.1.0-10.fc37.x86_64 103/152 Verifying : ncurses-base-6.3-3.20220501.fc37.noarch 104/152 Verifying : ncurses-libs-6.3-3.20220501.fc37.x86_64 105/152 Verifying : nim-srpm-macros-3-7.fc37.noarch 106/152 Verifying : ocaml-srpm-macros-7-2.fc37.noarch 107/152 Verifying : openblas-srpm-macros-2-12.fc37.noarch 108/152 Verifying : openldap-2.6.2-5.fc38.x86_64 109/152 Verifying : openssl-libs-1:3.0.5-2.fc37.x86_64 110/152 Verifying : p11-kit-0.24.1-3.fc37.x86_64 111/152 Verifying : p11-kit-trust-0.24.1-3.fc37.x86_64 112/152 Verifying : package-notes-srpm-macros-0.4-16.fc37.noarch 113/152 Verifying : pam-1.5.2-14.fc37.x86_64 114/152 Verifying : pam-libs-1.5.2-14.fc37.x86_64 115/152 Verifying : patch-2.7.6-17.fc37.x86_64 116/152 Verifying : pcre-8.45-1.fc37.2.x86_64 117/152 Verifying : pcre2-10.40-1.fc37.1.x86_64 118/152 Verifying : pcre2-syntax-10.40-1.fc37.1.noarch 119/152 Verifying : perl-srpm-macros-1-46.fc37.noarch 120/152 Verifying : pkgconf-1.8.0-3.fc37.x86_64 121/152 Verifying : pkgconf-m4-1.8.0-3.fc37.noarch 122/152 Verifying : pkgconf-pkg-config-1.8.0-3.fc37.x86_64 123/152 Verifying : popt-1.19~rc1-3.fc37.x86_64 124/152 Verifying : publicsuffix-list-dafsa-20210518-5.fc37.noarch 125/152 Verifying : python-srpm-macros-3.11-4.fc37.noarch 126/152 Verifying : qt5-srpm-macros-5.15.5-2.fc37.noarch 127/152 Verifying : readline-8.1-7.fc37.x86_64 128/152 Verifying : redhat-rpm-config-227-1.fc37.noarch 129/152 Verifying : rpm-4.18.0-0.beta1.4.fc37.x86_64 130/152 Verifying : rpm-build-4.18.0-0.beta1.4.fc37.x86_64 131/152 Verifying : rpm-build-libs-4.18.0-0.beta1.4.fc37.x86_64 132/152 Verifying : rpm-libs-4.18.0-0.beta1.4.fc37.x86_64 133/152 Verifying : rpmautospec-rpm-macros-0.3.0-1.fc37.noarch 134/152 Verifying : rust-srpm-macros-22-1.fc37.noarch 135/152 Verifying : sed-4.8-11.fc37.x86_64 136/152 Verifying : setup-2.14.1-2.fc37.noarch 137/152 Verifying : shadow-utils-2:4.11.1-4.fc37.x86_64 138/152 Verifying : sqlite-libs-3.39.2-2.fc37.x86_64 139/152 Verifying : systemd-libs-251.4-51.fc37.x86_64 140/152 Verifying : tar-2:1.34-3.fc36.x86_64 141/152 Verifying : tzdata-2022b-1.fc38.noarch 142/152 Verifying : unzip-6.0-58.fc37.x86_64 143/152 Verifying : util-linux-2.38.1-1.fc37.x86_64 144/152 Verifying : util-linux-core-2.38.1-1.fc37.x86_64 145/152 Verifying : which-2.21-35.fc37.x86_64 146/152 Verifying : xxhash-libs-0.8.1-3.fc37.x86_64 147/152 Verifying : xz-5.2.5-10.fc37.x86_64 148/152 Verifying : xz-libs-5.2.5-10.fc37.x86_64 149/152 Verifying : zip-3.0-33.fc37.x86_64 150/152 Verifying : zlib-1.2.12-4.fc37.x86_64 151/152 Verifying : zstd-1.5.2-3.fc37.x86_64 152/152 Installed: alternatives-1.19-3.fc37.x86_64 ansible-srpm-macros-1-6.fc37.noarch audit-libs-3.0.8-3.fc37.x86_64 authselect-1.4.0-3.fc37.x86_64 authselect-libs-1.4.0-3.fc37.x86_64 basesystem-11-14.fc37.noarch bash-5.1.16-3.fc37.x86_64 binutils-2.38-24.fc38.x86_64 binutils-gold-2.38-24.fc38.x86_64 bzip2-1.0.8-12.fc37.x86_64 bzip2-libs-1.0.8-12.fc37.x86_64 ca-certificates-2022.2.54-5.fc37.noarch coreutils-9.1-6.fc37.x86_64 coreutils-common-9.1-6.fc37.x86_64 cpio-2.13-13.fc37.x86_64 cracklib-2.9.6-28.fc36.x86_64 crypto-policies-20220802-1.gita99dfd2.fc37.noarch curl-7.84.0-2.fc37.x86_64 cyrus-sasl-lib-2.1.28-7.fc37.x86_64 debugedit-5.0-5.fc37.x86_64 diffutils-3.8-3.fc37.x86_64 dwz-0.14-7.fc37.x86_64 ed-1.18-2.fc37.x86_64 efi-srpm-macros-5-6.fc37.noarch elfutils-0.187-6.fc37.x86_64 elfutils-debuginfod-client-0.187-6.fc37.x86_64 elfutils-default-yama-scope-0.187-6.fc37.noarch elfutils-libelf-0.187-6.fc37.x86_64 elfutils-libs-0.187-6.fc37.x86_64 fedora-gpg-keys-38-0.2.noarch fedora-release-38-0.2.noarch fedora-release-common-38-0.2.noarch fedora-release-identity-basic-38-0.2.noarch fedora-repos-38-0.2.noarch fedora-repos-rawhide-38-0.2.noarch file-5.42-4.fc37.x86_64 file-libs-5.42-4.fc37.x86_64 filesystem-3.18-2.fc37.x86_64 findutils-1:4.9.0-2.fc37.x86_64 fonts-srpm-macros-1:2.0.5-8.fc37.noarch fpc-srpm-macros-1.3-6.fc37.noarch gawk-5.1.1-4.fc37.x86_64 gdb-minimal-12.1-4.fc37.x86_64 gdbm-libs-1:1.23-2.fc37.x86_64 ghc-srpm-macros-1.5.0-7.fc37.noarch glibc-2.36-1.fc37.x86_64 glibc-common-2.36-1.fc37.x86_64 glibc-gconv-extra-2.36-1.fc37.x86_64 glibc-minimal-langpack-2.36-1.fc37.x86_64 gmp-1:6.2.1-3.fc37.x86_64 gnat-srpm-macros-4-16.fc37.noarch go-srpm-macros-3.1.0-4.fc37.noarch grep-3.7-4.fc37.x86_64 gzip-1.12-2.fc37.x86_64 info-6.8-4.fc37.x86_64 jansson-2.13.1-5.fc37.x86_64 kernel-srpm-macros-1.0-15.fc37.noarch keyutils-libs-1.6.1-5.fc37.x86_64 krb5-libs-1.19.2-11.fc37.1.x86_64 libacl-2.3.1-4.fc37.x86_64 libarchive-3.6.1-2.fc37.x86_64 libattr-2.5.1-5.fc37.x86_64 libblkid-2.38.1-1.fc37.x86_64 libbrotli-1.0.9-9.fc38.x86_64 libcap-2.48-5.fc37.x86_64 libcap-ng-0.8.3-3.fc37.x86_64 libcom_err-1.46.5-3.fc37.x86_64 libcurl-7.84.0-2.fc37.x86_64 libdb-5.3.28-53.fc37.x86_64 libeconf-0.4.0-4.fc37.x86_64 libevent-2.1.12-7.fc37.x86_64 libfdisk-2.38.1-1.fc37.x86_64 libffi-3.4.2-9.fc37.x86_64 libgcc-12.1.1-4.fc38.x86_64 libgomp-12.1.1-4.fc38.x86_64 libidn2-2.3.3-2.fc37.x86_64 libmount-2.38.1-1.fc37.x86_64 libnghttp2-1.48.0-2.fc37.x86_64 libnsl2-2.0.0-4.fc37.x86_64 libpkgconf-1.8.0-3.fc37.x86_64 libpsl-0.21.1-6.fc37.x86_64 libpwquality-1.4.4-11.fc37.x86_64 libselinux-3.4-5.fc37.x86_64 libsemanage-3.4-5.fc37.x86_64 libsepol-3.4-3.fc37.x86_64 libsigsegv-2.14-3.fc37.x86_64 libsmartcols-2.38.1-1.fc37.x86_64 libssh-0.9.6-5.fc37.x86_64 libssh-config-0.9.6-5.fc37.noarch libstdc++-12.1.1-4.fc38.x86_64 libtasn1-4.18.0-3.fc37.x86_64 libtirpc-1.3.3-0.fc37.x86_64 libunistring-1.0-2.fc37.x86_64 libutempter-1.2.1-7.fc37.x86_64 libuuid-2.38.1-1.fc37.x86_64 libverto-0.3.2-4.fc37.x86_64 libxcrypt-4.4.28-3.fc38.x86_64 libxml2-2.9.14-3.fc37.x86_64 libzstd-1.5.2-3.fc37.x86_64 lua-libs-5.4.4-4.fc37.x86_64 lua-srpm-macros-1-7.fc37.noarch lz4-libs-1.9.3-5.fc37.x86_64 mpfr-4.1.0-10.fc37.x86_64 ncurses-base-6.3-3.20220501.fc37.noarch ncurses-libs-6.3-3.20220501.fc37.x86_64 nim-srpm-macros-3-7.fc37.noarch ocaml-srpm-macros-7-2.fc37.noarch openblas-srpm-macros-2-12.fc37.noarch openldap-2.6.2-5.fc38.x86_64 openssl-libs-1:3.0.5-2.fc37.x86_64 p11-kit-0.24.1-3.fc37.x86_64 p11-kit-trust-0.24.1-3.fc37.x86_64 package-notes-srpm-macros-0.4-16.fc37.noarch pam-1.5.2-14.fc37.x86_64 pam-libs-1.5.2-14.fc37.x86_64 patch-2.7.6-17.fc37.x86_64 pcre-8.45-1.fc37.2.x86_64 pcre2-10.40-1.fc37.1.x86_64 pcre2-syntax-10.40-1.fc37.1.noarch perl-srpm-macros-1-46.fc37.noarch pkgconf-1.8.0-3.fc37.x86_64 pkgconf-m4-1.8.0-3.fc37.noarch pkgconf-pkg-config-1.8.0-3.fc37.x86_64 popt-1.19~rc1-3.fc37.x86_64 publicsuffix-list-dafsa-20210518-5.fc37.noarch python-srpm-macros-3.11-4.fc37.noarch qt5-srpm-macros-5.15.5-2.fc37.noarch readline-8.1-7.fc37.x86_64 redhat-rpm-config-227-1.fc37.noarch rpm-4.18.0-0.beta1.4.fc37.x86_64 rpm-build-4.18.0-0.beta1.4.fc37.x86_64 rpm-build-libs-4.18.0-0.beta1.4.fc37.x86_64 rpm-libs-4.18.0-0.beta1.4.fc37.x86_64 rpmautospec-rpm-macros-0.3.0-1.fc37.noarch rust-srpm-macros-22-1.fc37.noarch sed-4.8-11.fc37.x86_64 setup-2.14.1-2.fc37.noarch shadow-utils-2:4.11.1-4.fc37.x86_64 sqlite-libs-3.39.2-2.fc37.x86_64 systemd-libs-251.4-51.fc37.x86_64 tar-2:1.34-3.fc36.x86_64 tzdata-2022b-1.fc38.noarch unzip-6.0-58.fc37.x86_64 util-linux-2.38.1-1.fc37.x86_64 util-linux-core-2.38.1-1.fc37.x86_64 which-2.21-35.fc37.x86_64 xxhash-libs-0.8.1-3.fc37.x86_64 xz-5.2.5-10.fc37.x86_64 xz-libs-5.2.5-10.fc37.x86_64 zip-3.0-33.fc37.x86_64 zlib-1.2.12-4.fc37.x86_64 zstd-1.5.2-3.fc37.x86_64 Complete! Finish: dnf install Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: libnghttp2-1.48.0-2.fc37.x86_64 dwz-0.14-7.fc37.x86_64 gdbm-libs-1.23-2.fc37.x86_64 grep-3.7-4.fc37.x86_64 libcom_err-1.46.5-3.fc37.x86_64 libsemanage-3.4-5.fc37.x86_64 info-6.8-4.fc37.x86_64 openldap-2.6.2-5.fc38.x86_64 cpio-2.13-13.fc37.x86_64 authselect-1.4.0-3.fc37.x86_64 rust-srpm-macros-22-1.fc37.noarch unzip-6.0-58.fc37.x86_64 libpsl-0.21.1-6.fc37.x86_64 binutils-gold-2.38-24.fc38.x86_64 elfutils-default-yama-scope-0.187-6.fc37.noarch glibc-gconv-extra-2.36-1.fc37.x86_64 findutils-4.9.0-2.fc37.x86_64 file-libs-5.42-4.fc37.x86_64 openblas-srpm-macros-2-12.fc37.noarch libblkid-2.38.1-1.fc37.x86_64 gpg-pubkey-5323552a-6112bcdc popt-1.19~rc1-3.fc37.x86_64 krb5-libs-1.19.2-11.fc37.1.x86_64 fonts-srpm-macros-2.0.5-8.fc37.noarch libattr-2.5.1-5.fc37.x86_64 libbrotli-1.0.9-9.fc38.x86_64 pkgconf-pkg-config-1.8.0-3.fc37.x86_64 libdb-5.3.28-53.fc37.x86_64 p11-kit-0.24.1-3.fc37.x86_64 gzip-1.12-2.fc37.x86_64 elfutils-libelf-0.187-6.fc37.x86_64 libuuid-2.38.1-1.fc37.x86_64 libsmartcols-2.38.1-1.fc37.x86_64 libssh-config-0.9.6-5.fc37.noarch bzip2-1.0.8-12.fc37.x86_64 pcre2-10.40-1.fc37.1.x86_64 fpc-srpm-macros-1.3-6.fc37.noarch keyutils-libs-1.6.1-5.fc37.x86_64 alternatives-1.19-3.fc37.x86_64 binutils-2.38-24.fc38.x86_64 glibc-minimal-langpack-2.36-1.fc37.x86_64 libxcrypt-4.4.28-3.fc38.x86_64 libverto-0.3.2-4.fc37.x86_64 redhat-rpm-config-227-1.fc37.noarch ed-1.18-2.fc37.x86_64 curl-7.84.0-2.fc37.x86_64 mpfr-4.1.0-10.fc37.x86_64 lz4-libs-1.9.3-5.fc37.x86_64 ansible-srpm-macros-1-6.fc37.noarch filesystem-3.18-2.fc37.x86_64 qt5-srpm-macros-5.15.5-2.fc37.noarch ncurses-base-6.3-3.20220501.fc37.noarch gpg-pubkey-eb10b464-6202d9c6 libsepol-3.4-3.fc37.x86_64 which-2.21-35.fc37.x86_64 fedora-repos-rawhide-38-0.2.noarch diffutils-3.8-3.fc37.x86_64 util-linux-2.38.1-1.fc37.x86_64 gdb-minimal-12.1-4.fc37.x86_64 perl-srpm-macros-1-46.fc37.noarch pkgconf-m4-1.8.0-3.fc37.noarch glibc-common-2.36-1.fc37.x86_64 rpm-build-4.18.0-0.beta1.4.fc37.x86_64 util-linux-core-2.38.1-1.fc37.x86_64 basesystem-11-14.fc37.noarch cyrus-sasl-lib-2.1.28-7.fc37.x86_64 sed-4.8-11.fc37.x86_64 fedora-repos-38-0.2.noarch libxml2-2.9.14-3.fc37.x86_64 libarchive-3.6.1-2.fc37.x86_64 p11-kit-trust-0.24.1-3.fc37.x86_64 audit-libs-3.0.8-3.fc37.x86_64 patch-2.7.6-17.fc37.x86_64 libacl-2.3.1-4.fc37.x86_64 kernel-srpm-macros-1.0-15.fc37.noarch pcre2-syntax-10.40-1.fc37.1.noarch libtirpc-1.3.3-0.fc37.x86_64 elfutils-libs-0.187-6.fc37.x86_64 rpmautospec-rpm-macros-0.3.0-1.fc37.noarch debugedit-5.0-5.fc37.x86_64 cracklib-2.9.6-28.fc36.x86_64 crypto-policies-20220802-1.gita99dfd2.fc37.noarch libgcc-12.1.1-4.fc38.x86_64 tar-1.34-3.fc36.x86_64 rpm-4.18.0-0.beta1.4.fc37.x86_64 gawk-5.1.1-4.fc37.x86_64 libtasn1-4.18.0-3.fc37.x86_64 pcre-8.45-1.fc37.2.x86_64 zstd-1.5.2-3.fc37.x86_64 openssl-libs-3.0.5-2.fc37.x86_64 libnsl2-2.0.0-4.fc37.x86_64 tzdata-2022b-1.fc38.noarch package-notes-srpm-macros-0.4-16.fc37.noarch lua-srpm-macros-1-7.fc37.noarch xz-5.2.5-10.fc37.x86_64 publicsuffix-list-dafsa-20210518-5.fc37.noarch fedora-release-identity-basic-38-0.2.noarch glibc-2.36-1.fc37.x86_64 jansson-2.13.1-5.fc37.x86_64 zlib-1.2.12-4.fc37.x86_64 coreutils-common-9.1-6.fc37.x86_64 nim-srpm-macros-3-7.fc37.noarch libfdisk-2.38.1-1.fc37.x86_64 systemd-libs-251.4-51.fc37.x86_64 file-5.42-4.fc37.x86_64 rpm-build-libs-4.18.0-0.beta1.4.fc37.x86_64 zip-3.0-33.fc37.x86_64 pkgconf-1.8.0-3.fc37.x86_64 libffi-3.4.2-9.fc37.x86_64 libmount-2.38.1-1.fc37.x86_64 fedora-gpg-keys-38-0.2.noarch sqlite-libs-3.39.2-2.fc37.x86_64 gmp-6.2.1-3.fc37.x86_64 lua-libs-5.4.4-4.fc37.x86_64 gnat-srpm-macros-4-16.fc37.noarch libidn2-2.3.3-2.fc37.x86_64 fedora-release-38-0.2.noarch libcap-2.48-5.fc37.x86_64 libpkgconf-1.8.0-3.fc37.x86_64 libselinux-3.4-5.fc37.x86_64 ocaml-srpm-macros-7-2.fc37.noarch setup-2.14.1-2.fc37.noarch bash-5.1.16-3.fc37.x86_64 libevent-2.1.12-7.fc37.x86_64 readline-8.1-7.fc37.x86_64 coreutils-9.1-6.fc37.x86_64 elfutils-0.187-6.fc37.x86_64 libsigsegv-2.14-3.fc37.x86_64 libunistring-1.0-2.fc37.x86_64 ghc-srpm-macros-1.5.0-7.fc37.noarch xz-libs-5.2.5-10.fc37.x86_64 libstdc++-12.1.1-4.fc38.x86_64 libssh-0.9.6-5.fc37.x86_64 efi-srpm-macros-5-6.fc37.noarch libgomp-12.1.1-4.fc38.x86_64 pam-libs-1.5.2-14.fc37.x86_64 libcurl-7.84.0-2.fc37.x86_64 authselect-libs-1.4.0-3.fc37.x86_64 libzstd-1.5.2-3.fc37.x86_64 xxhash-libs-0.8.1-3.fc37.x86_64 pam-1.5.2-14.fc37.x86_64 shadow-utils-4.11.1-4.fc37.x86_64 rpm-libs-4.18.0-0.beta1.4.fc37.x86_64 libpwquality-1.4.4-11.fc37.x86_64 libcap-ng-0.8.3-3.fc37.x86_64 elfutils-debuginfod-client-0.187-6.fc37.x86_64 python-srpm-macros-3.11-4.fc37.noarch go-srpm-macros-3.1.0-4.fc37.noarch fedora-release-common-38-0.2.noarch ncurses-libs-6.3-3.20220501.fc37.x86_64 bzip2-libs-1.0.8-12.fc37.x86_64 libutempter-1.2.1-7.fc37.x86_64 ca-certificates-2022.2.54-5.fc37.noarch libeconf-0.4.0-4.fc37.x86_64 Start: buildsrpm Start: rpmbuild -bs Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1658361600 Wrote: /builddir/build/SRPMS/dolfin-2019.1.0.post0-34.fc38.src.rpm Finish: rpmbuild -bs INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-x86_64-1660636830.872585/root/var/log/dnf.rpm.log /var/lib/mock/fedora-rawhide-x86_64-1660636830.872585/root/var/log/dnf.librepo.log /var/lib/mock/fedora-rawhide-x86_64-1660636830.872585/root/var/log/dnf.log Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-vgy5gmh1/dolfin/dolfin.spec) Config(child) 1 minutes 20 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running (timeout=108000): unbuffer mock --rebuild /var/lib/copr-rpmbuild/results/dolfin-2019.1.0.post0-34.fc38.src.rpm --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1660636830.872585 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 3.1 starting (python version = 3.10.4, NVR = mock-3.1-1.fc35)... Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/results/dolfin-2019.1.0.post0-34.fc38.src.rpm) Config(fedora-rawhide-x86_64) Start: clean chroot Finish: clean chroot Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1660636830.872585/root. INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1660636830.872585/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 3.1 INFO: Mock Version: 3.1 Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1660636830.872585/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 3.1 INFO: Mock Version: 3.1 Start: dnf update No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 50 kB/s | 3.0 kB 00:00 Copr repository 2.3 MB/s | 311 kB 00:00 fedora 283 kB/s | 16 kB 00:00 Dependencies resolved. Nothing to do. Complete! Finish: dnf update Finish: chroot init Start: build phase for dolfin-2019.1.0.post0-34.fc38.src.rpm Start: build setup for dolfin-2019.1.0.post0-34.fc38.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1658361600 Wrote: /builddir/build/SRPMS/dolfin-2019.1.0.post0-34.fc38.src.rpm No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 62 kB/s | 3.0 kB 00:00 Copr repository 2.3 MB/s | 313 kB 00:00 fedora 176 kB/s | 16 kB 00:00 Dependencies resolved. ======================================================================================== Package Arch Version Repo Size ======================================================================================== Installing: boost-devel x86_64 1.78.0-9.fc37 fedora 13 M chrpath x86_64 0.16-18.fc37 fedora 29 k cmake x86_64 3.24.0-1.fc38 fedora 6.6 M eigen3-devel noarch 3.4.0-8.fc37 fedora 1.2 M flexiblas-devel x86_64 3.2.1-2.fc37 fedora 116 k gcc-c++ x86_64 12.1.1-4.fc38 fedora 13 M gnupg2 x86_64 2.3.7-3.fc37 fedora 2.5 M hdf5-devel x86_64 1.12.1-10.fc37 fedora 1.3 M make x86_64 1:4.3-11.fc37 fedora 542 k petsc-devel x86_64 3.17.4-1.fc37 fedora 2.3 M pybind11-devel x86_64 2.10.0-1.fc37 fedora 165 k python3-devel x86_64 3.11.0~rc1-1.fc38 fedora 268 k python3-dijitso noarch 2019.1.0-11.fc37 fedora 91 k python3-ffc noarch 2019.1.0.post0-10.fc37 fedora 734 k python3-numpy x86_64 1:1.22.0-7.fc37 fedora 7.3 M python3-setuptools noarch 65.0.1-1.fc38 copr_base 1.5 M python3-ufl noarch 2019.1.0-14.fc37 fedora 549 k scotch-devel x86_64 6.1.2-3.fc37 fedora 13 k sundials-devel x86_64 5.8.0-6.fc37 fedora 1.0 M zlib-devel x86_64 1.2.12-4.fc37 fedora 44 k Installing dependencies: Lmod x86_64 8.7.7-2.fc37 fedora 258 k SuperLU x86_64 5.3.0-3.fc37 fedora 187 k annobin-docs noarch 10.81-1.fc38 fedora 91 k annobin-plugin-gcc x86_64 10.81-1.fc38 fedora 882 k boost x86_64 1.78.0-9.fc37 fedora 14 k boost-atomic x86_64 1.78.0-9.fc37 fedora 20 k boost-chrono x86_64 1.78.0-9.fc37 fedora 27 k boost-container x86_64 1.78.0-9.fc37 fedora 40 k boost-context x86_64 1.78.0-9.fc37 fedora 17 k boost-contract x86_64 1.78.0-9.fc37 fedora 47 k boost-coroutine x86_64 1.78.0-9.fc37 fedora 22 k boost-date-time x86_64 1.78.0-9.fc37 fedora 16 k boost-fiber x86_64 1.78.0-9.fc37 fedora 42 k boost-filesystem x86_64 1.78.0-9.fc37 fedora 66 k boost-graph x86_64 1.78.0-9.fc37 fedora 149 k boost-iostreams x86_64 1.78.0-9.fc37 fedora 42 k boost-json x86_64 1.78.0-9.fc37 fedora 111 k boost-locale x86_64 1.78.0-9.fc37 fedora 218 k boost-log x86_64 1.78.0-9.fc37 fedora 483 k boost-math x86_64 1.78.0-9.fc37 fedora 204 k boost-nowide x86_64 1.78.0-9.fc37 fedora 21 k boost-numpy3 x86_64 1.78.0-9.fc37 fedora 30 k boost-program-options x86_64 1.78.0-9.fc37 fedora 107 k boost-python3 x86_64 1.78.0-9.fc37 fedora 96 k boost-random x86_64 1.78.0-9.fc37 fedora 26 k boost-regex x86_64 1.78.0-9.fc37 fedora 113 k boost-serialization x86_64 1.78.0-9.fc37 fedora 134 k boost-stacktrace x86_64 1.78.0-9.fc37 fedora 30 k boost-system x86_64 1.78.0-9.fc37 fedora 16 k boost-test x86_64 1.78.0-9.fc37 fedora 234 k boost-thread x86_64 1.78.0-9.fc37 fedora 59 k boost-timer x86_64 1.78.0-9.fc37 fedora 26 k boost-type_erasure x86_64 1.78.0-9.fc37 fedora 35 k boost-wave x86_64 1.78.0-9.fc37 fedora 204 k cairo x86_64 1.17.6-2.fc37 fedora 676 k cgnslib x86_64 4.3.0-2.fc37 fedora 712 k cgnslib-common noarch 4.3.0-2.fc37 fedora 115 k cmake-data noarch 3.24.0-1.fc38 fedora 2.1 M cmake-filesystem x86_64 3.24.0-1.fc38 fedora 16 k cmake-rpm-macros noarch 3.24.0-1.fc38 fedora 15 k cpp x86_64 12.1.1-4.fc38 fedora 11 M dejavu-sans-fonts noarch 2.37-19.fc37 fedora 1.3 M emacs-filesystem noarch 1:28.1-3.fc37 fedora 9.5 k expat x86_64 2.4.8-2.fc37 fedora 110 k flexiblas x86_64 3.2.1-2.fc37 fedora 33 k flexiblas-netlib x86_64 3.2.1-2.fc37 fedora 3.1 M flexiblas-netlib64 x86_64 3.2.1-2.fc37 fedora 3.0 M flexiblas-openblas-openmp x86_64 3.2.1-2.fc37 fedora 17 k flexiblas-openblas-openmp64 x86_64 3.2.1-2.fc37 fedora 17 k fontconfig x86_64 2.14.0-2.fc37 fedora 288 k fonts-filesystem noarch 1:2.0.5-8.fc37 fedora 7.9 k freetype x86_64 2.12.1-3.fc37 fedora 407 k fribidi x86_64 1.0.12-2.fc37 fedora 89 k gc x86_64 8.0.6-4.fc37 fedora 103 k gcc x86_64 12.1.1-4.fc38 fedora 33 M gcc-gfortran x86_64 12.1.1-4.fc38 fedora 12 M gcc-plugin-annobin x86_64 12.1.1-4.fc38 fedora 50 k glib2 x86_64 2.73.2-7.fc37 fedora 2.7 M glibc-devel x86_64 2.36-1.fc37 fedora 96 k glibc-headers-x86 noarch 2.36-1.fc37 fedora 574 k gnutls x86_64 3.7.7-1.fc37 fedora 1.1 M google-noto-fonts-common noarch 20201206^1.git0c78c8329-2.fc37 fedora 17 k google-noto-sans-vf-fonts noarch 20201206^1.git0c78c8329-2.fc37 fedora 728 k graphite2 x86_64 1.3.14-10.fc37 fedora 95 k groff-base x86_64 1.22.4-10.fc37 fedora 1.1 M guile22 x86_64 2.2.7-6.fc37 fedora 6.5 M harfbuzz x86_64 5.1.0-2.fc37 fedora 820 k hdf5 x86_64 1.12.1-10.fc37 fedora 2.3 M hwdata noarch 0.361-2.fc37 fedora 1.5 M hwloc-libs x86_64 2.5.0-4.fc37 fedora 2.2 M jbigkit-libs x86_64 2.1-24.fc37 fedora 53 k jsoncpp x86_64 1.9.5-3.fc37 fedora 98 k kernel-headers x86_64 5.19.0-1.fc37 fedora 1.5 M langpacks-core-font-en noarch 3.0-26.fc37 fedora 10 k lcms2 x86_64 2.13.1-2.fc37 fedora 175 k libICE x86_64 1.0.10-9.fc37 fedora 71 k libSM x86_64 1.2.3-11.fc37 fedora 42 k libX11 x86_64 1.8.1-2.fc37 fedora 649 k libX11-common noarch 1.8.1-2.fc37 fedora 182 k libX11-xcb x86_64 1.8.1-2.fc37 fedora 12 k libXau x86_64 1.0.9-9.fc37 fedora 30 k libXext x86_64 1.3.4-9.fc37 fedora 39 k libXfixes x86_64 6.0.0-4.fc37 fedora 19 k libXft x86_64 2.3.4-3.fc37 fedora 62 k libXmu x86_64 1.1.3-9.fc37 fedora 74 k libXrender x86_64 0.9.10-17.fc37 fedora 27 k libXt x86_64 1.2.1-3.fc37 fedora 180 k libXxf86vm x86_64 1.1.4-19.fc37 fedora 18 k libaec x86_64 1.0.6-3.fc37 fedora 41 k libaec-devel x86_64 1.0.6-3.fc37 fedora 12 k libassuan x86_64 2.5.5-5.fc37 fedora 67 k libb2 x86_64 0.98.1-7.fc37 fedora 25 k libdrm x86_64 2.4.110-2.fc37 fedora 162 k libgcrypt x86_64 1.10.1-4.fc37 fedora 512 k libgfortran x86_64 12.1.1-4.fc38 fedora 898 k libglvnd x86_64 1:1.4.0-4.fc38 fedora 133 k libglvnd-glx x86_64 1:1.4.0-4.fc38 fedora 139 k libglvnd-opengl x86_64 1:1.4.0-4.fc38 fedora 42 k libgpg-error x86_64 1.45-2.fc37 fedora 227 k libicu x86_64 71.1-1.fc37 fedora 10 M libicu-devel x86_64 71.1-1.fc37 fedora 916 k libimagequant x86_64 2.17.0-3.fc37 fedora 62 k libjpeg-turbo x86_64 2.1.3-2.fc37 fedora 181 k libksba x86_64 1.6.0-4.fc37 fedora 157 k libmpc x86_64 1.2.1-5.fc37 fedora 61 k libpciaccess x86_64 0.16-7.fc37 fedora 27 k libpng x86_64 2:1.6.37-13.fc37 fedora 119 k libqhull_r x86_64 1:7.2.1-10.fc37 fedora 169 k libquadmath x86_64 12.1.1-4.fc38 fedora 199 k libquadmath-devel x86_64 12.1.1-4.fc38 fedora 40 k libraqm x86_64 0.8.0-2.fc37 fedora 20 k libstdc++-devel x86_64 12.1.1-4.fc38 fedora 2.5 M libtiff x86_64 4.4.0-4.fc37 fedora 197 k libtool-ltdl x86_64 2.4.7-2.fc37 fedora 37 k libuv x86_64 1:1.44.2-2.fc37 fedora 151 k libwebp x86_64 1.2.4-1.fc37 fedora 278 k libxcb x86_64 1.13.1-10.fc37 fedora 231 k libxcrypt-devel x86_64 4.4.28-3.fc38 fedora 28 k libxshmfence x86_64 1.3-11.fc37 fedora 12 k libxslt x86_64 1.1.35-3.fc37 fedora 243 k lua x86_64 5.4.4-4.fc37 fedora 189 k lua-filesystem x86_64 1.8.0-7.fc37 fedora 34 k lua-json noarch 1.3.4-2.fc37 fedora 30 k lua-lpeg x86_64 1.0.2-9.fc37 fedora 67 k lua-posix x86_64 35.1-4.fc37 fedora 139 k lua-term x86_64 0.07-16.fc37 fedora 15 k mesa-libGL x86_64 22.2.0~rc2-1.fc38 fedora 176 k mesa-libGLU x86_64 9.0.1-7.fc37 fedora 153 k mesa-libglapi x86_64 22.2.0~rc2-1.fc38 fedora 54 k metis x86_64 5.1.0-33.fc37 fedora 573 k mpdecimal x86_64 2.5.1-4.fc37 fedora 102 k mpi4py-common noarch 3.1.3-4.fc37 fedora 18 k mpich x86_64 4.0.2-3.fc37 fedora 1.8 M ncurses x86_64 6.3-3.20220501.fc37 fedora 409 k nettle x86_64 3.8-2.fc37 fedora 414 k npth x86_64 1.6-9.fc37 fedora 24 k openblas x86_64 0.3.20-2.fc37 fedora 34 k openblas-openmp x86_64 0.3.20-2.fc37 fedora 5.1 M openblas-openmp64 x86_64 0.3.20-2.fc37 fedora 4.9 M openjpeg2 x86_64 2.5.0-2.fc37 fedora 178 k perl-Carp noarch 1.52-489.fc37 fedora 29 k perl-Class-Struct noarch 0.66-491.fc37 fedora 26 k perl-DynaLoader x86_64 1.52-491.fc37 fedora 30 k perl-Encode x86_64 4:3.19-491.fc37 fedora 1.7 M perl-Errno x86_64 1.36-491.fc37 fedora 19 k perl-Exporter noarch 5.77-489.fc37 fedora 31 k perl-Fcntl x86_64 1.15-491.fc37 fedora 25 k perl-File-Basename noarch 2.85-491.fc37 fedora 22 k perl-File-Path noarch 2.18-489.fc37 fedora 35 k perl-File-Temp noarch 1:0.231.100-489.fc37 fedora 59 k perl-File-stat noarch 1.12-491.fc37 fedora 22 k perl-Getopt-Long noarch 1:2.52-489.fc37 fedora 60 k perl-Getopt-Std noarch 1.13-491.fc37 fedora 20 k perl-HTTP-Tiny noarch 0.082-1.fc37 fedora 55 k perl-IO x86_64 1.50-491.fc37 fedora 96 k perl-IPC-Open3 noarch 1.22-491.fc37 fedora 27 k perl-MIME-Base64 x86_64 3.16-489.fc37 fedora 30 k perl-POSIX x86_64 2.03-491.fc37 fedora 102 k perl-PathTools x86_64 3.84-489.fc37 fedora 89 k perl-Pod-Escapes noarch 1:1.07-489.fc37 fedora 20 k perl-Pod-Perldoc noarch 3.28.01-490.fc37 fedora 90 k perl-Pod-Simple noarch 1:3.43-490.fc37 fedora 225 k perl-Pod-Usage noarch 4:2.03-3.fc37 fedora 40 k perl-Scalar-List-Utils x86_64 5:1.63-489.fc38 fedora 72 k perl-SelectSaver noarch 1.02-491.fc37 fedora 16 k perl-Socket x86_64 4:2.035-2.fc37 fedora 55 k perl-Storable x86_64 1:3.26-489.fc37 fedora 97 k perl-Symbol noarch 1.09-491.fc37 fedora 19 k perl-Term-ANSIColor noarch 5.01-490.fc37 fedora 48 k perl-Term-Cap noarch 1.17-489.fc37 fedora 22 k perl-Text-ParseWords noarch 3.31-489.fc37 fedora 16 k perl-Text-Tabs+Wrap noarch 2021.0814-489.fc37 fedora 22 k perl-Time-Local noarch 2:1.300-489.fc37 fedora 33 k perl-constant noarch 1.33-490.fc37 fedora 23 k perl-if noarch 0.61.000-491.fc37 fedora 18 k perl-interpreter x86_64 4:5.36.0-491.fc37 fedora 76 k perl-libs x86_64 4:5.36.0-491.fc37 fedora 2.2 M perl-mro x86_64 1.26-491.fc37 fedora 33 k perl-overload noarch 1.35-491.fc37 fedora 50 k perl-overloading noarch 0.02-491.fc37 fedora 17 k perl-parent noarch 1:0.238-489.fc37 fedora 14 k perl-podlators noarch 1:4.14-489.fc37 fedora 116 k perl-subs noarch 1.04-491.fc37 fedora 16 k perl-vars noarch 1.05-491.fc37 fedora 17 k petsc x86_64 3.17.4-1.fc37 fedora 6.7 M pixman x86_64 0.40.0-6.fc37 fedora 277 k procps-ng x86_64 3.3.17-6.fc37 fedora 338 k pyproject-rpm-macros noarch 1.3.3-1.fc38 fedora 41 k python-pip-wheel noarch 22.2-1.fc37 fedora 1.4 M python-rpm-macros noarch 3.11-4.fc37 fedora 18 k python-setuptools-wheel noarch 65.0.1-1.fc38 copr_base 701 k python3 x86_64 3.11.0~rc1-1.fc38 fedora 27 k python3-Cython x86_64 0.29.32-1.fc37 fedora 2.6 M python3-appdirs noarch 1.4.4-7.fc37 fedora 24 k python3-brotli x86_64 1.0.9-9.fc38 copr_base 319 k python3-cairo x86_64 1.21.0-3.fc37 fedora 124 k python3-cycler noarch 0.11.0-6.fc37 fedora 21 k python3-dateutil noarch 1:2.8.2-4.fc37 fedora 361 k python3-fastcache x86_64 1.1.0-14.fc37 fedora 29 k python3-fiat noarch 2019.1.0-11.fc37 fedora 228 k python3-fonttools x86_64 4.34.4-3.fc37 fedora 2.2 M python3-fs noarch 2.4.11-12.fc37 fedora 294 k python3-gmpy2 x86_64 2.1.2-4.fc37 fedora 195 k python3-kiwisolver x86_64 1.4.4-1.fc37 fedora 65 k python3-libs x86_64 3.11.0~rc1-1.fc38 fedora 9.6 M python3-lxml x86_64 4.7.1-5.fc37 fedora 1.2 M python3-matplotlib x86_64 3.5.3-3.fc38 fedora 4.0 M python3-matplotlib-data noarch 3.5.3-3.fc38 fedora 524 k python3-matplotlib-data-fonts noarch 3.5.3-3.fc38 fedora 2.3 M python3-matplotlib-tk x86_64 3.5.3-3.fc38 fedora 51 k python3-mpi4py-mpich x86_64 3.1.3-4.fc37 fedora 557 k python3-mpich x86_64 4.0.2-3.fc37 fedora 8.9 k python3-mpmath noarch 1.2.1-5.fc37 fedora 1.1 M python3-munkres noarch 1.1.2-13.fc37 fedora 26 k python3-numpy-f2py x86_64 1:1.22.0-7.fc37 fedora 413 k python3-olefile noarch 0.46-18.fc37 fedora 67 k python3-packaging noarch 21.3-6.fc37 fedora 98 k python3-pillow x86_64 9.2.0-2.fc37 fedora 912 k python3-pillow-tk x86_64 9.2.0-2.fc37 fedora 31 k python3-pyglet noarch 1.5.23-3.fc37 fedora 1.8 M python3-pyparsing noarch 3.0.9-2.fc37 fedora 262 k python3-pytz noarch 2022.2-1.fc38 fedora 60 k python3-rpm-generators noarch 13-2.fc37 fedora 30 k python3-rpm-macros noarch 3.11-4.fc37 fedora 15 k python3-scipy x86_64 1.8.1-6.fc37 fedora 20 M python3-six noarch 1.16.0-8.fc37 fedora 42 k python3-sympy noarch 1.10.1-3.fc37 fedora 18 M python3-tkinter x86_64 3.11.0~rc1-1.fc38 fedora 417 k rhash x86_64 1.4.2-3.fc37 fedora 185 k scotch x86_64 6.1.2-3.fc37 fedora 397 k suitesparse x86_64 5.10.1-3.fc37 fedora 1.1 M suitesparse64 x86_64 5.10.1-3.fc37 fedora 1.1 M sundials x86_64 5.8.0-6.fc37 fedora 1.0 M tbb x86_64 2020.3-12.fc37 fedora 170 k tcl x86_64 1:8.6.12-3.fc37 fedora 1.1 M tk x86_64 1:8.6.12-3.fc37 fedora 1.6 M vim-filesystem noarch 2:9.0.189-1.fc38 fedora 20 k xml-common noarch 0.6.3-59.fc37 fedora 31 k Transaction Summary ======================================================================================== Install 258 Packages Total size: 269 M Total download size: 151 M Installed size: 1.1 G Downloading Packages: [SKIPPED] python-setuptools-wheel-65.0.1-1.fc38.noarch.rpm: Already downloaded [SKIPPED] python3-setuptools-65.0.1-1.fc38.noarch.rpm: Already downloaded [SKIPPED] annobin-docs-10.81-1.fc38.noarch.rpm: Already downloaded [SKIPPED] annobin-plugin-gcc-10.81-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] boost-regex-1.78.0-9.fc37.x86_64.rpm: Already downloaded [SKIPPED] cairo-1.17.6-2.fc37.x86_64.rpm: Already downloaded [SKIPPED] cpp-12.1.1-4.fc38.x86_64.rpm: Already downloaded [SKIPPED] emacs-filesystem-28.1-3.fc37.noarch.rpm: Already downloaded [SKIPPED] expat-2.4.8-2.fc37.x86_64.rpm: Already downloaded [SKIPPED] fontconfig-2.14.0-2.fc37.x86_64.rpm: Already downloaded [SKIPPED] fonts-filesystem-2.0.5-8.fc37.noarch.rpm: Already downloaded [SKIPPED] freetype-2.12.1-3.fc37.x86_64.rpm: Already downloaded [SKIPPED] fribidi-1.0.12-2.fc37.x86_64.rpm: Already downloaded [SKIPPED] gc-8.0.6-4.fc37.x86_64.rpm: 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python3-cycler-0.11.0-6.fc37.noarch 209/258 Verifying : python3-dateutil-1:2.8.2-4.fc37.noarch 210/258 Verifying : python3-devel-3.11.0~rc1-1.fc38.x86_64 211/258 Verifying : python3-dijitso-2019.1.0-11.fc37.noarch 212/258 Verifying : python3-fastcache-1.1.0-14.fc37.x86_64 213/258 Verifying : python3-ffc-2019.1.0.post0-10.fc37.noarch 214/258 Verifying : python3-fiat-2019.1.0-11.fc37.noarch 215/258 Verifying : python3-fonttools-4.34.4-3.fc37.x86_64 216/258 Verifying : python3-fs-2.4.11-12.fc37.noarch 217/258 Verifying : python3-gmpy2-2.1.2-4.fc37.x86_64 218/258 Verifying : python3-kiwisolver-1.4.4-1.fc37.x86_64 219/258 Verifying : python3-libs-3.11.0~rc1-1.fc38.x86_64 220/258 Verifying : python3-lxml-4.7.1-5.fc37.x86_64 221/258 Verifying : python3-matplotlib-3.5.3-3.fc38.x86_64 222/258 Verifying : python3-matplotlib-data-3.5.3-3.fc38.noarch 223/258 Verifying : python3-matplotlib-data-fonts-3.5.3-3.fc38.noarc 224/258 Verifying : python3-matplotlib-tk-3.5.3-3.fc38.x86_64 225/258 Verifying : python3-mpi4py-mpich-3.1.3-4.fc37.x86_64 226/258 Verifying : python3-mpich-4.0.2-3.fc37.x86_64 227/258 Verifying : python3-mpmath-1.2.1-5.fc37.noarch 228/258 Verifying : python3-munkres-1.1.2-13.fc37.noarch 229/258 Verifying : python3-numpy-1:1.22.0-7.fc37.x86_64 230/258 Verifying : python3-numpy-f2py-1:1.22.0-7.fc37.x86_64 231/258 Verifying : python3-olefile-0.46-18.fc37.noarch 232/258 Verifying : python3-packaging-21.3-6.fc37.noarch 233/258 Verifying : python3-pillow-9.2.0-2.fc37.x86_64 234/258 Verifying : python3-pillow-tk-9.2.0-2.fc37.x86_64 235/258 Verifying : python3-pyglet-1.5.23-3.fc37.noarch 236/258 Verifying : python3-pyparsing-3.0.9-2.fc37.noarch 237/258 Verifying : python3-pytz-2022.2-1.fc38.noarch 238/258 Verifying : python3-rpm-generators-13-2.fc37.noarch 239/258 Verifying : python3-rpm-macros-3.11-4.fc37.noarch 240/258 Verifying : python3-scipy-1.8.1-6.fc37.x86_64 241/258 Verifying : python3-six-1.16.0-8.fc37.noarch 242/258 Verifying : python3-sympy-1.10.1-3.fc37.noarch 243/258 Verifying : python3-tkinter-3.11.0~rc1-1.fc38.x86_64 244/258 Verifying : python3-ufl-2019.1.0-14.fc37.noarch 245/258 Verifying : rhash-1.4.2-3.fc37.x86_64 246/258 Verifying : scotch-6.1.2-3.fc37.x86_64 247/258 Verifying : scotch-devel-6.1.2-3.fc37.x86_64 248/258 Verifying : suitesparse-5.10.1-3.fc37.x86_64 249/258 Verifying : suitesparse64-5.10.1-3.fc37.x86_64 250/258 Verifying : sundials-5.8.0-6.fc37.x86_64 251/258 Verifying : sundials-devel-5.8.0-6.fc37.x86_64 252/258 Verifying : tbb-2020.3-12.fc37.x86_64 253/258 Verifying : tcl-1:8.6.12-3.fc37.x86_64 254/258 Verifying : tk-1:8.6.12-3.fc37.x86_64 255/258 Verifying : vim-filesystem-2:9.0.189-1.fc38.noarch 256/258 Verifying : xml-common-0.6.3-59.fc37.noarch 257/258 Verifying : zlib-devel-1.2.12-4.fc37.x86_64 258/258 Installed: Lmod-8.7.7-2.fc37.x86_64 SuperLU-5.3.0-3.fc37.x86_64 annobin-docs-10.81-1.fc38.noarch annobin-plugin-gcc-10.81-1.fc38.x86_64 boost-1.78.0-9.fc37.x86_64 boost-atomic-1.78.0-9.fc37.x86_64 boost-chrono-1.78.0-9.fc37.x86_64 boost-container-1.78.0-9.fc37.x86_64 boost-context-1.78.0-9.fc37.x86_64 boost-contract-1.78.0-9.fc37.x86_64 boost-coroutine-1.78.0-9.fc37.x86_64 boost-date-time-1.78.0-9.fc37.x86_64 boost-devel-1.78.0-9.fc37.x86_64 boost-fiber-1.78.0-9.fc37.x86_64 boost-filesystem-1.78.0-9.fc37.x86_64 boost-graph-1.78.0-9.fc37.x86_64 boost-iostreams-1.78.0-9.fc37.x86_64 boost-json-1.78.0-9.fc37.x86_64 boost-locale-1.78.0-9.fc37.x86_64 boost-log-1.78.0-9.fc37.x86_64 boost-math-1.78.0-9.fc37.x86_64 boost-nowide-1.78.0-9.fc37.x86_64 boost-numpy3-1.78.0-9.fc37.x86_64 boost-program-options-1.78.0-9.fc37.x86_64 boost-python3-1.78.0-9.fc37.x86_64 boost-random-1.78.0-9.fc37.x86_64 boost-regex-1.78.0-9.fc37.x86_64 boost-serialization-1.78.0-9.fc37.x86_64 boost-stacktrace-1.78.0-9.fc37.x86_64 boost-system-1.78.0-9.fc37.x86_64 boost-test-1.78.0-9.fc37.x86_64 boost-thread-1.78.0-9.fc37.x86_64 boost-timer-1.78.0-9.fc37.x86_64 boost-type_erasure-1.78.0-9.fc37.x86_64 boost-wave-1.78.0-9.fc37.x86_64 cairo-1.17.6-2.fc37.x86_64 cgnslib-4.3.0-2.fc37.x86_64 cgnslib-common-4.3.0-2.fc37.noarch chrpath-0.16-18.fc37.x86_64 cmake-3.24.0-1.fc38.x86_64 cmake-data-3.24.0-1.fc38.noarch cmake-filesystem-3.24.0-1.fc38.x86_64 cmake-rpm-macros-3.24.0-1.fc38.noarch cpp-12.1.1-4.fc38.x86_64 dejavu-sans-fonts-2.37-19.fc37.noarch eigen3-devel-3.4.0-8.fc37.noarch emacs-filesystem-1:28.1-3.fc37.noarch expat-2.4.8-2.fc37.x86_64 flexiblas-3.2.1-2.fc37.x86_64 flexiblas-devel-3.2.1-2.fc37.x86_64 flexiblas-netlib-3.2.1-2.fc37.x86_64 flexiblas-netlib64-3.2.1-2.fc37.x86_64 flexiblas-openblas-openmp-3.2.1-2.fc37.x86_64 flexiblas-openblas-openmp64-3.2.1-2.fc37.x86_64 fontconfig-2.14.0-2.fc37.x86_64 fonts-filesystem-1:2.0.5-8.fc37.noarch freetype-2.12.1-3.fc37.x86_64 fribidi-1.0.12-2.fc37.x86_64 gc-8.0.6-4.fc37.x86_64 gcc-12.1.1-4.fc38.x86_64 gcc-c++-12.1.1-4.fc38.x86_64 gcc-gfortran-12.1.1-4.fc38.x86_64 gcc-plugin-annobin-12.1.1-4.fc38.x86_64 glib2-2.73.2-7.fc37.x86_64 glibc-devel-2.36-1.fc37.x86_64 glibc-headers-x86-2.36-1.fc37.noarch gnupg2-2.3.7-3.fc37.x86_64 gnutls-3.7.7-1.fc37.x86_64 google-noto-fonts-common-20201206^1.git0c78c8329-2.fc37.noarch google-noto-sans-vf-fonts-20201206^1.git0c78c8329-2.fc37.noarch graphite2-1.3.14-10.fc37.x86_64 groff-base-1.22.4-10.fc37.x86_64 guile22-2.2.7-6.fc37.x86_64 harfbuzz-5.1.0-2.fc37.x86_64 hdf5-1.12.1-10.fc37.x86_64 hdf5-devel-1.12.1-10.fc37.x86_64 hwdata-0.361-2.fc37.noarch hwloc-libs-2.5.0-4.fc37.x86_64 jbigkit-libs-2.1-24.fc37.x86_64 jsoncpp-1.9.5-3.fc37.x86_64 kernel-headers-5.19.0-1.fc37.x86_64 langpacks-core-font-en-3.0-26.fc37.noarch lcms2-2.13.1-2.fc37.x86_64 libICE-1.0.10-9.fc37.x86_64 libSM-1.2.3-11.fc37.x86_64 libX11-1.8.1-2.fc37.x86_64 libX11-common-1.8.1-2.fc37.noarch libX11-xcb-1.8.1-2.fc37.x86_64 libXau-1.0.9-9.fc37.x86_64 libXext-1.3.4-9.fc37.x86_64 libXfixes-6.0.0-4.fc37.x86_64 libXft-2.3.4-3.fc37.x86_64 libXmu-1.1.3-9.fc37.x86_64 libXrender-0.9.10-17.fc37.x86_64 libXt-1.2.1-3.fc37.x86_64 libXxf86vm-1.1.4-19.fc37.x86_64 libaec-1.0.6-3.fc37.x86_64 libaec-devel-1.0.6-3.fc37.x86_64 libassuan-2.5.5-5.fc37.x86_64 libb2-0.98.1-7.fc37.x86_64 libdrm-2.4.110-2.fc37.x86_64 libgcrypt-1.10.1-4.fc37.x86_64 libgfortran-12.1.1-4.fc38.x86_64 libglvnd-1:1.4.0-4.fc38.x86_64 libglvnd-glx-1:1.4.0-4.fc38.x86_64 libglvnd-opengl-1:1.4.0-4.fc38.x86_64 libgpg-error-1.45-2.fc37.x86_64 libicu-71.1-1.fc37.x86_64 libicu-devel-71.1-1.fc37.x86_64 libimagequant-2.17.0-3.fc37.x86_64 libjpeg-turbo-2.1.3-2.fc37.x86_64 libksba-1.6.0-4.fc37.x86_64 libmpc-1.2.1-5.fc37.x86_64 libpciaccess-0.16-7.fc37.x86_64 libpng-2:1.6.37-13.fc37.x86_64 libqhull_r-1:7.2.1-10.fc37.x86_64 libquadmath-12.1.1-4.fc38.x86_64 libquadmath-devel-12.1.1-4.fc38.x86_64 libraqm-0.8.0-2.fc37.x86_64 libstdc++-devel-12.1.1-4.fc38.x86_64 libtiff-4.4.0-4.fc37.x86_64 libtool-ltdl-2.4.7-2.fc37.x86_64 libuv-1:1.44.2-2.fc37.x86_64 libwebp-1.2.4-1.fc37.x86_64 libxcb-1.13.1-10.fc37.x86_64 libxcrypt-devel-4.4.28-3.fc38.x86_64 libxshmfence-1.3-11.fc37.x86_64 libxslt-1.1.35-3.fc37.x86_64 lua-5.4.4-4.fc37.x86_64 lua-filesystem-1.8.0-7.fc37.x86_64 lua-json-1.3.4-2.fc37.noarch lua-lpeg-1.0.2-9.fc37.x86_64 lua-posix-35.1-4.fc37.x86_64 lua-term-0.07-16.fc37.x86_64 make-1:4.3-11.fc37.x86_64 mesa-libGL-22.2.0~rc2-1.fc38.x86_64 mesa-libGLU-9.0.1-7.fc37.x86_64 mesa-libglapi-22.2.0~rc2-1.fc38.x86_64 metis-5.1.0-33.fc37.x86_64 mpdecimal-2.5.1-4.fc37.x86_64 mpi4py-common-3.1.3-4.fc37.noarch mpich-4.0.2-3.fc37.x86_64 ncurses-6.3-3.20220501.fc37.x86_64 nettle-3.8-2.fc37.x86_64 npth-1.6-9.fc37.x86_64 openblas-0.3.20-2.fc37.x86_64 openblas-openmp-0.3.20-2.fc37.x86_64 openblas-openmp64-0.3.20-2.fc37.x86_64 openjpeg2-2.5.0-2.fc37.x86_64 perl-Carp-1.52-489.fc37.noarch perl-Class-Struct-0.66-491.fc37.noarch perl-DynaLoader-1.52-491.fc37.x86_64 perl-Encode-4:3.19-491.fc37.x86_64 perl-Errno-1.36-491.fc37.x86_64 perl-Exporter-5.77-489.fc37.noarch perl-Fcntl-1.15-491.fc37.x86_64 perl-File-Basename-2.85-491.fc37.noarch perl-File-Path-2.18-489.fc37.noarch perl-File-Temp-1:0.231.100-489.fc37.noarch perl-File-stat-1.12-491.fc37.noarch perl-Getopt-Long-1:2.52-489.fc37.noarch perl-Getopt-Std-1.13-491.fc37.noarch perl-HTTP-Tiny-0.082-1.fc37.noarch perl-IO-1.50-491.fc37.x86_64 perl-IPC-Open3-1.22-491.fc37.noarch perl-MIME-Base64-3.16-489.fc37.x86_64 perl-POSIX-2.03-491.fc37.x86_64 perl-PathTools-3.84-489.fc37.x86_64 perl-Pod-Escapes-1:1.07-489.fc37.noarch perl-Pod-Perldoc-3.28.01-490.fc37.noarch perl-Pod-Simple-1:3.43-490.fc37.noarch perl-Pod-Usage-4:2.03-3.fc37.noarch perl-Scalar-List-Utils-5:1.63-489.fc38.x86_64 perl-SelectSaver-1.02-491.fc37.noarch perl-Socket-4:2.035-2.fc37.x86_64 perl-Storable-1:3.26-489.fc37.x86_64 perl-Symbol-1.09-491.fc37.noarch perl-Term-ANSIColor-5.01-490.fc37.noarch perl-Term-Cap-1.17-489.fc37.noarch perl-Text-ParseWords-3.31-489.fc37.noarch perl-Text-Tabs+Wrap-2021.0814-489.fc37.noarch perl-Time-Local-2:1.300-489.fc37.noarch perl-constant-1.33-490.fc37.noarch perl-if-0.61.000-491.fc37.noarch perl-interpreter-4:5.36.0-491.fc37.x86_64 perl-libs-4:5.36.0-491.fc37.x86_64 perl-mro-1.26-491.fc37.x86_64 perl-overload-1.35-491.fc37.noarch perl-overloading-0.02-491.fc37.noarch perl-parent-1:0.238-489.fc37.noarch perl-podlators-1:4.14-489.fc37.noarch perl-subs-1.04-491.fc37.noarch perl-vars-1.05-491.fc37.noarch petsc-3.17.4-1.fc37.x86_64 petsc-devel-3.17.4-1.fc37.x86_64 pixman-0.40.0-6.fc37.x86_64 procps-ng-3.3.17-6.fc37.x86_64 pybind11-devel-2.10.0-1.fc37.x86_64 pyproject-rpm-macros-1.3.3-1.fc38.noarch python-pip-wheel-22.2-1.fc37.noarch python-rpm-macros-3.11-4.fc37.noarch python-setuptools-wheel-65.0.1-1.fc38.noarch python3-3.11.0~rc1-1.fc38.x86_64 python3-Cython-0.29.32-1.fc37.x86_64 python3-appdirs-1.4.4-7.fc37.noarch python3-brotli-1.0.9-9.fc38.x86_64 python3-cairo-1.21.0-3.fc37.x86_64 python3-cycler-0.11.0-6.fc37.noarch python3-dateutil-1:2.8.2-4.fc37.noarch python3-devel-3.11.0~rc1-1.fc38.x86_64 python3-dijitso-2019.1.0-11.fc37.noarch python3-fastcache-1.1.0-14.fc37.x86_64 python3-ffc-2019.1.0.post0-10.fc37.noarch python3-fiat-2019.1.0-11.fc37.noarch python3-fonttools-4.34.4-3.fc37.x86_64 python3-fs-2.4.11-12.fc37.noarch python3-gmpy2-2.1.2-4.fc37.x86_64 python3-kiwisolver-1.4.4-1.fc37.x86_64 python3-libs-3.11.0~rc1-1.fc38.x86_64 python3-lxml-4.7.1-5.fc37.x86_64 python3-matplotlib-3.5.3-3.fc38.x86_64 python3-matplotlib-data-3.5.3-3.fc38.noarch python3-matplotlib-data-fonts-3.5.3-3.fc38.noarch python3-matplotlib-tk-3.5.3-3.fc38.x86_64 python3-mpi4py-mpich-3.1.3-4.fc37.x86_64 python3-mpich-4.0.2-3.fc37.x86_64 python3-mpmath-1.2.1-5.fc37.noarch python3-munkres-1.1.2-13.fc37.noarch python3-numpy-1:1.22.0-7.fc37.x86_64 python3-numpy-f2py-1:1.22.0-7.fc37.x86_64 python3-olefile-0.46-18.fc37.noarch python3-packaging-21.3-6.fc37.noarch python3-pillow-9.2.0-2.fc37.x86_64 python3-pillow-tk-9.2.0-2.fc37.x86_64 python3-pyglet-1.5.23-3.fc37.noarch python3-pyparsing-3.0.9-2.fc37.noarch python3-pytz-2022.2-1.fc38.noarch python3-rpm-generators-13-2.fc37.noarch python3-rpm-macros-3.11-4.fc37.noarch python3-scipy-1.8.1-6.fc37.x86_64 python3-setuptools-65.0.1-1.fc38.noarch python3-six-1.16.0-8.fc37.noarch python3-sympy-1.10.1-3.fc37.noarch python3-tkinter-3.11.0~rc1-1.fc38.x86_64 python3-ufl-2019.1.0-14.fc37.noarch rhash-1.4.2-3.fc37.x86_64 scotch-6.1.2-3.fc37.x86_64 scotch-devel-6.1.2-3.fc37.x86_64 suitesparse-5.10.1-3.fc37.x86_64 suitesparse64-5.10.1-3.fc37.x86_64 sundials-5.8.0-6.fc37.x86_64 sundials-devel-5.8.0-6.fc37.x86_64 tbb-2020.3-12.fc37.x86_64 tcl-1:8.6.12-3.fc37.x86_64 tk-1:8.6.12-3.fc37.x86_64 vim-filesystem-2:9.0.189-1.fc38.noarch xml-common-0.6.3-59.fc37.noarch zlib-devel-1.2.12-4.fc37.x86_64 Complete! Finish: build setup for dolfin-2019.1.0.post0-34.fc38.src.rpm Start: rpmbuild dolfin-2019.1.0.post0-34.fc38.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1658361600 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.Ik6ws4 + umask 022 + cd /builddir/build/BUILD + /usr/lib/rpm/redhat/gpgverify --keyring=/builddir/build/SOURCES/3083BE4C722232E28AD0828CBED06106DD22BAB3.gpg --signature=/builddir/build/SOURCES/dolfin-2019.1.0.post0.tar.gz.asc --data=/builddir/build/SOURCES/dolfin-2019.1.0.post0.tar.gz gpgv: Signature made Fri Apr 26 07:47:43 2019 UTC gpgv: using RSA key 3083BE4C722232E28AD0828CBED06106DD22BAB3 gpgv: Good signature from "FEniCS Project Steering Council " + cd /builddir/build/BUILD + rm -rf dolfin-2019.1.0.post0 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/dolfin-2019.1.0.post0.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd dolfin-2019.1.0.post0 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0001-pkgconfig-drop-irrelevant-part-from-Libs-and-Cflags.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + sed -i -r 's|pybind11==|pybind11>=|' python/setup.py + cat + sed -r -i 's/#include \n\0/' dolfin/geometry/IntersectionConstruction.cpp dolfin/mesh/MeshFunction.h + sed -r -i 's|boost/detail/endian.hpp|boost/endian/arithmetic.hpp|' dolfin/io/VTKFile.cpp dolfin/io/VTKWriter.cpp + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.rFGhDo + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/dolfin-2019.1.0.post0/.package_note-dolfin-2019.1.0.post0-34.fc38.x86_64.ld' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + '[' -f /usr/lib/rpm/generate-rpm-note.sh ']' + /usr/lib/rpm/generate-rpm-note.sh dolfin 2019.1.0.post0-34.fc38 x86_64 + cd dolfin-2019.1.0.post0 + mkdir -p build + cd build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -DH5_USE_110_API' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API' + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -DH5_USE_110_API' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/dolfin-2019.1.0.post0/.package_note-dolfin-2019.1.0.post0-34.fc38.x86_64.ld' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + /usr/bin/cmake -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON .. -DBLA_VENDOR=FlexiBLAS -DCMAKE_INSTALL_RPATH_USE_LINK_PATH=off -- The C compiler identification is GNU 12.1.1 -- The CXX compiler identification is GNU 12.1.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Performing Test HAVE_PIPE -- Performing Test HAVE_PIPE - Success -- Performing Test HAVE_PEDANTIC -- Performing Test HAVE_PEDANTIC - Success -- Performing Test HAVE_DEBUG -- Performing Test HAVE_DEBUG - Success -- Performing Test HAVE_O2_OPTIMISATION -- Performing Test HAVE_O2_OPTIMISATION - Success CMake Warning (dev) at /usr/share/cmake/Modules/FindPackageHandleStandardArgs.cmake:438 (message): The package name passed to `find_package_handle_standard_args` (MPI_C) does not match the name of the calling package (MPI). This can lead to problems in calling code that expects `find_package` result variables (e.g., `_FOUND`) to follow a certain pattern. Call Stack (most recent call first): cmake/modules/FindMPI.cmake:611 (find_package_handle_standard_args) CMakeLists.txt:227 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- Could NOT find MPI_C (missing: MPI_C_LIBRARIES MPI_C_INCLUDE_PATH) CMake Warning (dev) at /usr/share/cmake/Modules/FindPackageHandleStandardArgs.cmake:438 (message): The package name passed to `find_package_handle_standard_args` (MPI_CXX) does not match the name of the calling package (MPI). This can lead to problems in calling code that expects `find_package` result variables (e.g., `_FOUND`) to follow a certain pattern. Call Stack (most recent call first): cmake/modules/FindMPI.cmake:611 (find_package_handle_standard_args) CMakeLists.txt:227 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- Could NOT find MPI_CXX (missing: MPI_CXX_LIBRARIES MPI_CXX_INCLUDE_PATH) -- Found Boost: /usr/include (found version "1.78.0") found components: timer filesystem program_options iostreams chrono regex -- Found Eigen3: /usr/include/eigen3 (Required is at least version "3.2.90") -- Found PythonInterp: /usr/bin/python3 (found suitable version "3.11", minimum required is "3") -- Found UFC: /usr/lib/python3.11/site-packages/ffc/backends/ufc (Required is at least version "2019.1") -- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.0") -- Checking for one of the modules 'craypetsc_real;PETSc' -- Test PETSC_TEST_RUNS with shared library linking - Success -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of PetscInt -- Check size of PetscInt - done -- Found PETSc: TRUE (found suitable version "3.17.4", minimum required is "3.7") -- Checking for one of the modules 'crayslepc_real;SLEPc' -- SLEPc could not be found. Be sure to set SLEPC_DIR. (missing: SLEPC_FOUND) (Required is at least version "3.7") -- Checking for package 'AMD' -- Checking for package 'UMFPACK' -- Checking for package 'AMD' -- Checking for package 'CHOLMOD' -- Checking for package 'AMD' -- A library with BLAS API not found. Please specify library location. -- LAPACK requires BLAS -- UMFPACK could not be found. Be sure to set UMFPACK_DIR. (missing: UMFPACK_INCLUDE_DIRS AMD_LIBRARIES BLAS_LIBRARIES UMFPACK_TEST_RUNS) -- Checking for package 'CHOLMOD' -- Checking for package 'AMD' -- A library with BLAS API not found. Please specify library location. -- LAPACK requires BLAS -- CHOLMOD could not be found. Be sure to set CHOLMOD_DIR. (missing: CHOLMOD_INCLUDE_DIRS CHOLMOD_TEST_RUNS) -- Found HDF5: /lib64/libhdf5.so (found version "1.12.1") found components: C -- Checking for Trilinos -- Unable to find Trilinos (>= 12.4.0) -- Trilinos could not be found -- Found ZLIB: /lib64/libz.so (found version "1.2.12") -- The following features have been enabled: * BUILD_SHARED_LIBS, Build DOLFIN with shared libraries. * DOLFIN_AUTO_DETECT_MPI, Detect MPI automatically (turn this off to use the MPI compiler wrappers directly via setting CXX, CXX, FC). * DOLFIN_WITH_LIBRARY_VERSION, Build with library version information. * DOLFIN_ENABLE_DOCS, Enable generation of documentation. * DOLFIN_ENABLE_MPI, Compile with support for MPI. * DOLFIN_ENABLE_PETSC, Compile with support for PETSc. * DOLFIN_ENABLE_SLEPC, Compile with support for SLEPc. * DOLFIN_ENABLE_TRILINOS, Compile with support for Trilinos. * DOLFIN_ENABLE_UMFPACK, Compile with support for UMFPACK. * DOLFIN_ENABLE_CHOLMOD, Compile with support for CHOLMOD. * DOLFIN_ENABLE_SCOTCH, Compile with support for SCOTCH. * DOLFIN_ENABLE_PARMETIS, Compile with support for ParMETIS. * DOLFIN_ENABLE_SUNDIALS, Compile with support for SUNDIALS. * DOLFIN_ENABLE_ZLIB, Compile with support for zlib. * DOLFIN_ENABLE_HDF5, Compile with support for HDF5. -- The following OPTIONAL packages have been found: * PETSc (required version >= 3.7), Portable, Extensible Toolkit for Scientific Computation, Enables the PETSc linear algebra backend * HDF5, Hierarchical Data Format 5 (HDF5), * ZLIB, Compression library, -- The following REQUIRED packages have been found: * Boost, Boost C++ libraries, * Eigen3 (required version >= 3.2.90), Lightweight C++ template library for linear algebra, * PythonInterp (required version >= 3), Interactive high-level object-oriented language, * UFC (required version >= 2019.1), Unified language for form-compilers (part of FFC), * PkgConfig -- The following features have been disabled: * CMAKE_USE_RELATIVE_PATHS, Use relative paths in makefiles and projects. * DOLFIN_ENABLE_CODE_COVERAGE, Enable code coverage. * DOLFIN_ENABLE_BENCHMARKS, Enable benchmark programs. * DOLFIN_SKIP_BUILD_TESTS, Skip build tests for testing usability of dependency packages. * DOLFIN_DEPRECATION_ERROR, Turn deprecation warnings into errors. * DOLFIN_ENABLE_GEOMETRY_DEBUGGING, Enable geometry debugging. * CMAKE_INSTALL_RPATH_USE_LINK_PATH, Add paths to linker search and installed rpath. -- The following OPTIONAL packages have not been found: * MPI, Message Passing Interface (MPI) Enables DOLFIN to run in parallel with MPI * SLEPc (required version >= 3.7), Scalable Library for Eigenvalue Problem Computations, * UMFPACK, Sparse LU factorization library, * BLAS, Basic Linear Algebra Subprograms, * CHOLMOD, Sparse Cholesky factorization library for sparse matrices, -- -- Generating demo source files from reStructuredText -- -------------------------------------------------- extract written to /builddir/build/BUILD/dolfin-2019.1.0.post0/demo/documented/auto-adaptive-poisson/cpp/AdaptivePoisson.ufl extract written to /builddir/build/BUILD/dolfin-2019.1.0.post0/demo/documented/auto-adaptive-poisson/cpp/main.cpp extract written to /builddir/build/BUILD/dolfin-2019.1.0.post0/demo/documented/biharmonic/cpp/Biharmonic.ufl extract written to /builddir/build/BUILD/dolfin-2019.1.0.post0/demo/documented/biharmonic/cpp/main.cpp extract written to /builddir/build/BUILD/dolfin-2019.1.0.post0/demo/documented/built-in-meshes/cpp/main.cpp extract written to /builddir/build/BUILD/dolfin-2019.1.0.post0/demo/documented/eigenvalue/cpp/StiffnessMatrix.ufl extract written to /builddir/build/BUILD/dolfin-2019.1.0.post0/demo/documented/eigenvalue/cpp/main.cpp extract written to /builddir/build/BUILD/dolfin-2019.1.0.post0/demo/documented/hyperelasticity/cpp/HyperElasticity.ufl extract written to /builddir/build/BUILD/dolfin-2019.1.0.post0/demo/documented/hyperelasticity/cpp/main.cpp extract written to /builddir/build/BUILD/dolfin-2019.1.0.post0/demo/documented/mixed-poisson/cpp/MixedPoisson.ufl extract written to /builddir/build/BUILD/dolfin-2019.1.0.post0/demo/documented/mixed-poisson/cpp/main.cpp extract written to /builddir/build/BUILD/dolfin-2019.1.0.post0/demo/documented/nonmatching-interpolation/cpp/P1.ufl extract written to /builddir/build/BUILD/dolfin-2019.1.0.post0/demo/documented/nonmatching-interpolation/cpp/P3.ufl extract written to /builddir/build/BUILD/dolfin-2019.1.0.post0/demo/documented/nonmatching-interpolation/cpp/main.cpp extract written to /builddir/build/BUILD/dolfin-2019.1.0.post0/demo/documented/poisson/cpp/Poisson.ufl extract written to /builddir/build/BUILD/dolfin-2019.1.0.post0/demo/documented/poisson/cpp/main.cpp -- -- Generating form files in demo, test and bench directories. May take some time... -- ---------------------------------------------------------------------------------------- -- -- Generating CMakeLists.txt files in demo, test and bench directories -- ------------------------------------------------------------------- -- -- Copying demo and test data to build directory. -- ---------------------------------------------- -- Performing Test HAVE_NO_MULTLINE -- Performing Test HAVE_NO_MULTLINE - Success -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_CXX_FLAGS_RELEASE CMAKE_C_FLAGS_RELEASE CMAKE_Fortran_FLAGS_RELEASE CMAKE_INSTALL_DO_STRIP INCLUDE_INSTALL_DIR LIB_INSTALL_DIR LIB_SUFFIX SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/dolfin-2019.1.0.post0/build + /usr/bin/make -O -j2 V=1 VERBOSE=1 /usr/bin/cmake -S/builddir/build/BUILD/dolfin-2019.1.0.post0 -B/builddir/build/BUILD/dolfin-2019.1.0.post0/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/dolfin-2019.1.0.post0/build/CMakeFiles /builddir/build/BUILD/dolfin-2019.1.0.post0/build//CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all /usr/bin/make -f dolfin/ale/CMakeFiles/compile_ale_forms.dir/build.make dolfin/ale/CMakeFiles/compile_ale_forms.dir/depend make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/dolfin-2019.1.0.post0 /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/ale /builddir/build/BUILD/dolfin-2019.1.0.post0/build /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin/ale /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin/ale/CMakeFiles/compile_ale_forms.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' /usr/bin/make -f dolfin/ale/CMakeFiles/compile_ale_forms.dir/build.make dolfin/ale/CMakeFiles/compile_ale_forms.dir/build make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 0%] Compiling form Poisson1D.ufl cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin/ale && /usr/bin/python3 -m ffc -l dolfin -O -r auto -o /builddir/build/BUILD/dolfin-2019.1.0.post0/build /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/ale/Poisson1D.ufl make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 0%] Compiling form Poisson2D.ufl cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin/ale && /usr/bin/python3 -m ffc -l dolfin -O -r auto -o /builddir/build/BUILD/dolfin-2019.1.0.post0/build /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/ale/Poisson2D.ufl make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 0%] Compiling form Poisson3D.ufl cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin/ale && /usr/bin/python3 -m ffc -l dolfin -O -r auto -o /builddir/build/BUILD/dolfin-2019.1.0.post0/build /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/ale/Poisson3D.ufl make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[1]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 0%] Built target compile_ale_forms make[1]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' /usr/bin/make -f dolfin/CMakeFiles/dolfin.dir/build.make dolfin/CMakeFiles/dolfin.dir/depend make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/dolfin-2019.1.0.post0 /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin /builddir/build/BUILD/dolfin-2019.1.0.post0/build /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin/CMakeFiles/dolfin.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' /usr/bin/make -f dolfin/CMakeFiles/dolfin.dir/build.make dolfin/CMakeFiles/dolfin.dir/build make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 0%] Building CXX object dolfin/CMakeFiles/dolfin.dir/adaptivity/AdaptiveLinearVariationalSolver.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/adaptivity/AdaptiveLinearVariationalSolver.cpp.o -MF CMakeFiles/dolfin.dir/adaptivity/AdaptiveLinearVariationalSolver.cpp.o.d -o CMakeFiles/dolfin.dir/adaptivity/AdaptiveLinearVariationalSolver.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/adaptivity/AdaptiveLinearVariationalSolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 0%] Building CXX object dolfin/CMakeFiles/dolfin.dir/adaptivity/adapt.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/adaptivity/adapt.cpp.o -MF CMakeFiles/dolfin.dir/adaptivity/adapt.cpp.o.d -o CMakeFiles/dolfin.dir/adaptivity/adapt.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/adaptivity/adapt.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 0%] Building CXX object dolfin/CMakeFiles/dolfin.dir/adaptivity/AdaptiveNonlinearVariationalSolver.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/adaptivity/AdaptiveNonlinearVariationalSolver.cpp.o -MF CMakeFiles/dolfin.dir/adaptivity/AdaptiveNonlinearVariationalSolver.cpp.o.d -o CMakeFiles/dolfin.dir/adaptivity/AdaptiveNonlinearVariationalSolver.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/adaptivity/AdaptiveNonlinearVariationalSolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 1%] Building CXX object dolfin/CMakeFiles/dolfin.dir/adaptivity/adaptivesolve.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/adaptivity/adaptivesolve.cpp.o -MF CMakeFiles/dolfin.dir/adaptivity/adaptivesolve.cpp.o.d -o CMakeFiles/dolfin.dir/adaptivity/adaptivesolve.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/adaptivity/adaptivesolve.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 1%] Building CXX object dolfin/CMakeFiles/dolfin.dir/adaptivity/ErrorControl.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/adaptivity/ErrorControl.cpp.o -MF CMakeFiles/dolfin.dir/adaptivity/ErrorControl.cpp.o.d -o CMakeFiles/dolfin.dir/adaptivity/ErrorControl.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/adaptivity/ErrorControl.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 3%] Building CXX object dolfin/CMakeFiles/dolfin.dir/adaptivity/GenericAdaptiveVariationalSolver.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/adaptivity/GenericAdaptiveVariationalSolver.cpp.o -MF CMakeFiles/dolfin.dir/adaptivity/GenericAdaptiveVariationalSolver.cpp.o.d -o CMakeFiles/dolfin.dir/adaptivity/GenericAdaptiveVariationalSolver.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/adaptivity/GenericAdaptiveVariationalSolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 3%] Building CXX object dolfin/CMakeFiles/dolfin.dir/adaptivity/GoalFunctional.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/adaptivity/GoalFunctional.cpp.o -MF CMakeFiles/dolfin.dir/adaptivity/GoalFunctional.cpp.o.d -o CMakeFiles/dolfin.dir/adaptivity/GoalFunctional.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/adaptivity/GoalFunctional.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 1%] Building CXX object dolfin/CMakeFiles/dolfin.dir/adaptivity/Extrapolation.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/adaptivity/Extrapolation.cpp.o -MF CMakeFiles/dolfin.dir/adaptivity/Extrapolation.cpp.o.d -o CMakeFiles/dolfin.dir/adaptivity/Extrapolation.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/adaptivity/Extrapolation.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 3%] Building CXX object dolfin/CMakeFiles/dolfin.dir/adaptivity/marking.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/adaptivity/marking.cpp.o -MF CMakeFiles/dolfin.dir/adaptivity/marking.cpp.o.d -o CMakeFiles/dolfin.dir/adaptivity/marking.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/adaptivity/marking.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 3%] Building CXX object dolfin/CMakeFiles/dolfin.dir/adaptivity/TimeSeries.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/adaptivity/TimeSeries.cpp.o -MF CMakeFiles/dolfin.dir/adaptivity/TimeSeries.cpp.o.d -o CMakeFiles/dolfin.dir/adaptivity/TimeSeries.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/adaptivity/TimeSeries.cpp In file included from /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.h:30, from /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5File.h:32, from /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/adaptivity/TimeSeries.cpp:30: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In static member function 'static void dolfin::HDF5Interface::add_attribute_value(hid_t, std::string, const T&) [with T = std::__cxx11::basic_string; hid_t = long int; std::string = std::__cxx11::basic_string]': /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:578:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] 578 | herr_t status = H5Tset_size(datatype_id, attribute_value.size()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In static member function 'static void dolfin::HDF5Interface::get_attribute_value(hid_t, hid_t, T&) [with T = std::__cxx11::basic_string; hid_t = long int]': /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:661:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] 661 | herr_t status = H5Tset_size(memtype, string_length); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of 'static void dolfin::HDF5Interface::get_attribute(hid_t, std::string, std::string, T&) [with T = double; hid_t = long int; std::string = std::__cxx11::basic_string]': /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/adaptivity/TimeSeries.cpp:110:37: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:440:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] 440 | herr_t status; | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of 'static void dolfin::HDF5Interface::get_attribute_value(hid_t, hid_t, T&) [with T = double; hid_t = long int]': /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:454:24: required from 'static void dolfin::HDF5Interface::get_attribute(hid_t, std::string, std::string, T&) [with T = double; hid_t = long int; std::string = std::__cxx11::basic_string]' /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/adaptivity/TimeSeries.cpp:110:37: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:615:12: warning: unused variable 'status' [-Wunused-variable] 615 | herr_t status = H5Aread(attr_id, h5type, &attribute_value); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of 'static void dolfin::HDF5Interface::add_attribute(hid_t, std::string, std::string, const T&) [with T = double; hid_t = long int; std::string = std::__cxx11::basic_string]': /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/adaptivity/TimeSeries.cpp:84:31: required from 'void dolfin::TimeSeries::store_object(MPI_Comm, const T&, double, std::vector&, std::string, std::string) [with T = dolfin::GenericVector; MPI_Comm = int; std::string = std::__cxx11::basic_string]' /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/adaptivity/TimeSeries.cpp:168:15: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:486:14: warning: unused variable 'status' [-Wunused-variable] 486 | herr_t status = H5Adelete(dset_id, attribute_name.c_str()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:494:12: warning: unused variable 'status' [-Wunused-variable] 494 | herr_t status = H5Oclose(dset_id); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of 'static void dolfin::HDF5Interface::add_attribute_value(hid_t, std::string, const T&) [with T = double; hid_t = long int; std::string = std::__cxx11::basic_string]': /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:491:24: required from 'static void dolfin::HDF5Interface::add_attribute(hid_t, std::string, std::string, const T&) [with T = double; hid_t = long int; std::string = std::__cxx11::basic_string]' /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/adaptivity/TimeSeries.cpp:84:31: required from 'void dolfin::TimeSeries::store_object(MPI_Comm, const T&, double, std::vector&, std::string, std::string) [with T = dolfin::GenericVector; MPI_Comm = int; std::string = std::__cxx11::basic_string]' /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/adaptivity/TimeSeries.cpp:168:15: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:523:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] 523 | herr_t status = H5Awrite(attribute_id, h5type, &attribute_value); | ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 4%] Building CXX object dolfin/CMakeFiles/dolfin.dir/ale/ALE.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/ale/ALE.cpp.o -MF CMakeFiles/dolfin.dir/ale/ALE.cpp.o.d -o CMakeFiles/dolfin.dir/ale/ALE.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/ale/ALE.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 4%] Building CXX object dolfin/CMakeFiles/dolfin.dir/ale/MeshDisplacement.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/ale/MeshDisplacement.cpp.o -MF CMakeFiles/dolfin.dir/ale/MeshDisplacement.cpp.o.d -o CMakeFiles/dolfin.dir/ale/MeshDisplacement.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/ale/MeshDisplacement.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 6%] Building CXX object dolfin/CMakeFiles/dolfin.dir/common/defines.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -DDOLFIN_GIT_COMMIT_HASH=\"unknown\" -DUFC_SIGNATURE=\"1e5e8d5476f82af05ab9c93365d99f971e0284d6\" -MD -MT dolfin/CMakeFiles/dolfin.dir/common/defines.cpp.o -MF CMakeFiles/dolfin.dir/common/defines.cpp.o.d -o CMakeFiles/dolfin.dir/common/defines.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/common/defines.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 6%] Building CXX object dolfin/CMakeFiles/dolfin.dir/common/init.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/common/init.cpp.o -MF CMakeFiles/dolfin.dir/common/init.cpp.o.d -o CMakeFiles/dolfin.dir/common/init.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/common/init.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 6%] Building CXX object dolfin/CMakeFiles/dolfin.dir/common/MPI.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/common/MPI.cpp.o -MF CMakeFiles/dolfin.dir/common/MPI.cpp.o.d -o CMakeFiles/dolfin.dir/common/MPI.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/common/MPI.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 4%] Building CXX object dolfin/CMakeFiles/dolfin.dir/ale/HarmonicSmoothing.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/ale/HarmonicSmoothing.cpp.o -MF CMakeFiles/dolfin.dir/ale/HarmonicSmoothing.cpp.o.d -o CMakeFiles/dolfin.dir/ale/HarmonicSmoothing.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/ale/HarmonicSmoothing.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 6%] Building CXX object dolfin/CMakeFiles/dolfin.dir/common/SubSystemsManager.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/common/SubSystemsManager.cpp.o -MF CMakeFiles/dolfin.dir/common/SubSystemsManager.cpp.o.d -o CMakeFiles/dolfin.dir/common/SubSystemsManager.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/common/SubSystemsManager.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 7%] Building CXX object dolfin/CMakeFiles/dolfin.dir/common/Timer.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/common/Timer.cpp.o -MF CMakeFiles/dolfin.dir/common/Timer.cpp.o.d -o CMakeFiles/dolfin.dir/common/Timer.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/common/Timer.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 7%] Building CXX object dolfin/CMakeFiles/dolfin.dir/common/UniqueIdGenerator.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/common/UniqueIdGenerator.cpp.o -MF CMakeFiles/dolfin.dir/common/UniqueIdGenerator.cpp.o.d -o CMakeFiles/dolfin.dir/common/UniqueIdGenerator.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/common/UniqueIdGenerator.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 7%] Building CXX object dolfin/CMakeFiles/dolfin.dir/common/timing.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/common/timing.cpp.o -MF CMakeFiles/dolfin.dir/common/timing.cpp.o.d -o CMakeFiles/dolfin.dir/common/timing.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/common/timing.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 9%] Building CXX object dolfin/CMakeFiles/dolfin.dir/common/utils.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/common/utils.cpp.o -MF CMakeFiles/dolfin.dir/common/utils.cpp.o.d -o CMakeFiles/dolfin.dir/common/utils.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/common/utils.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 9%] Building CXX object dolfin/CMakeFiles/dolfin.dir/common/Variable.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/common/Variable.cpp.o -MF CMakeFiles/dolfin.dir/common/Variable.cpp.o.d -o CMakeFiles/dolfin.dir/common/Variable.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/common/Variable.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 9%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/assemble.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/assemble.cpp.o -MF CMakeFiles/dolfin.dir/fem/assemble.cpp.o.d -o CMakeFiles/dolfin.dir/fem/assemble.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/assemble.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 9%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/assemble_local.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/assemble_local.cpp.o -MF CMakeFiles/dolfin.dir/fem/assemble_local.cpp.o.d -o CMakeFiles/dolfin.dir/fem/assemble_local.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/assemble_local.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 10%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/AssemblerBase.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/AssemblerBase.cpp.o -MF CMakeFiles/dolfin.dir/fem/AssemblerBase.cpp.o.d -o CMakeFiles/dolfin.dir/fem/AssemblerBase.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/AssemblerBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 10%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/Assembler.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/Assembler.cpp.o -MF CMakeFiles/dolfin.dir/fem/Assembler.cpp.o.d -o CMakeFiles/dolfin.dir/fem/Assembler.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/Assembler.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 12%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/DiscreteOperators.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/DiscreteOperators.cpp.o -MF CMakeFiles/dolfin.dir/fem/DiscreteOperators.cpp.o.d -o CMakeFiles/dolfin.dir/fem/DiscreteOperators.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/DiscreteOperators.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 10%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/DirichletBC.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/DirichletBC.cpp.o -MF CMakeFiles/dolfin.dir/fem/DirichletBC.cpp.o.d -o CMakeFiles/dolfin.dir/fem/DirichletBC.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/DirichletBC.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 12%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/DofMap.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/DofMap.cpp.o -MF CMakeFiles/dolfin.dir/fem/DofMap.cpp.o.d -o CMakeFiles/dolfin.dir/fem/DofMap.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/DofMap.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 14%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/Equation.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/Equation.cpp.o -MF CMakeFiles/dolfin.dir/fem/Equation.cpp.o.d -o CMakeFiles/dolfin.dir/fem/Equation.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/Equation.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 12%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/DofMapBuilder.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/DofMapBuilder.cpp.o -MF CMakeFiles/dolfin.dir/fem/DofMapBuilder.cpp.o.d -o CMakeFiles/dolfin.dir/fem/DofMapBuilder.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/DofMapBuilder.cpp /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/DofMapBuilder.cpp: In static member function 'static void dolfin::DofMapBuilder::compute_node_reordering(dolfin::IndexMap&, std::vector&, const std::unordered_map >&, const std::vector&, const std::vector >&, const std::vector&, const std::set&, MPI_Comm)': /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/DofMapBuilder.cpp:1663:13: warning: unused variable 'it' [-Wunused-variable] 1663 | for (auto it : old_to_new_local) | ^~ make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 14%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/fem_utils.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/fem_utils.cpp.o -MF CMakeFiles/dolfin.dir/fem/fem_utils.cpp.o.d -o CMakeFiles/dolfin.dir/fem/fem_utils.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/fem_utils.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 14%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/FiniteElement.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/FiniteElement.cpp.o -MF CMakeFiles/dolfin.dir/fem/FiniteElement.cpp.o.d -o CMakeFiles/dolfin.dir/fem/FiniteElement.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/FiniteElement.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 15%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/LinearTimeDependentProblem.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/LinearTimeDependentProblem.cpp.o -MF CMakeFiles/dolfin.dir/fem/LinearTimeDependentProblem.cpp.o.d -o CMakeFiles/dolfin.dir/fem/LinearTimeDependentProblem.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/LinearTimeDependentProblem.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 14%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/Form.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/Form.cpp.o -MF CMakeFiles/dolfin.dir/fem/Form.cpp.o.d -o CMakeFiles/dolfin.dir/fem/Form.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/Form.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 15%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/LinearVariationalProblem.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/LinearVariationalProblem.cpp.o -MF CMakeFiles/dolfin.dir/fem/LinearVariationalProblem.cpp.o.d -o CMakeFiles/dolfin.dir/fem/LinearVariationalProblem.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/LinearVariationalProblem.cpp /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/LinearVariationalProblem.cpp: In member function 'void dolfin::LinearVariationalProblem::check_forms() const': /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/LinearVariationalProblem.cpp:114:19: warning: loop variable 'bc' creates a copy from type 'const std::shared_ptr' [-Wrange-loop-construct] 114 | for (const auto bc: _bcs) | ^~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/LinearVariationalProblem.cpp:114:19: note: use reference type to prevent copying 114 | for (const auto bc: _bcs) | ^~ | & make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 15%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/LinearVariationalSolver.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/LinearVariationalSolver.cpp.o -MF CMakeFiles/dolfin.dir/fem/LinearVariationalSolver.cpp.o.d -o CMakeFiles/dolfin.dir/fem/LinearVariationalSolver.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/LinearVariationalSolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 17%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/LocalAssembler.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/LocalAssembler.cpp.o -MF CMakeFiles/dolfin.dir/fem/LocalAssembler.cpp.o.d -o CMakeFiles/dolfin.dir/fem/LocalAssembler.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/LocalAssembler.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 17%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/MultiMeshAssembler.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/MultiMeshAssembler.cpp.o -MF CMakeFiles/dolfin.dir/fem/MultiMeshAssembler.cpp.o.d -o CMakeFiles/dolfin.dir/fem/MultiMeshAssembler.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/MultiMeshAssembler.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 17%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/LocalSolver.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/LocalSolver.cpp.o -MF CMakeFiles/dolfin.dir/fem/LocalSolver.cpp.o.d -o CMakeFiles/dolfin.dir/fem/LocalSolver.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/LocalSolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 17%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/MultiMeshDirichletBC.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/MultiMeshDirichletBC.cpp.o -MF CMakeFiles/dolfin.dir/fem/MultiMeshDirichletBC.cpp.o.d -o CMakeFiles/dolfin.dir/fem/MultiMeshDirichletBC.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/MultiMeshDirichletBC.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 18%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/MultiMeshForm.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/MultiMeshForm.cpp.o -MF CMakeFiles/dolfin.dir/fem/MultiMeshForm.cpp.o.d -o CMakeFiles/dolfin.dir/fem/MultiMeshForm.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/MultiMeshForm.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 18%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/MultiMeshDofMap.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/MultiMeshDofMap.cpp.o -MF CMakeFiles/dolfin.dir/fem/MultiMeshDofMap.cpp.o.d -o CMakeFiles/dolfin.dir/fem/MultiMeshDofMap.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/MultiMeshDofMap.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 18%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/NonlinearVariationalProblem.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/NonlinearVariationalProblem.cpp.o -MF CMakeFiles/dolfin.dir/fem/NonlinearVariationalProblem.cpp.o.d -o CMakeFiles/dolfin.dir/fem/NonlinearVariationalProblem.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/NonlinearVariationalProblem.cpp /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/NonlinearVariationalProblem.cpp: In member function 'void dolfin::NonlinearVariationalProblem::check_forms() const': /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/NonlinearVariationalProblem.cpp:156:19: warning: loop variable 'bc' creates a copy from type 'const std::shared_ptr' [-Wrange-loop-construct] 156 | for (const auto bc: _bcs) | ^~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/NonlinearVariationalProblem.cpp:156:19: note: use reference type to prevent copying 156 | for (const auto bc: _bcs) | ^~ | & make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 20%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/NonlinearVariationalSolver.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/NonlinearVariationalSolver.cpp.o -MF CMakeFiles/dolfin.dir/fem/NonlinearVariationalSolver.cpp.o.d -o CMakeFiles/dolfin.dir/fem/NonlinearVariationalSolver.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/NonlinearVariationalSolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 20%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/PointSource.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/PointSource.cpp.o -MF CMakeFiles/dolfin.dir/fem/PointSource.cpp.o.d -o CMakeFiles/dolfin.dir/fem/PointSource.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/PointSource.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 20%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/solve.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/solve.cpp.o -MF CMakeFiles/dolfin.dir/fem/solve.cpp.o.d -o CMakeFiles/dolfin.dir/fem/solve.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/solve.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 20%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/PETScDMCollection.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/PETScDMCollection.cpp.o -MF CMakeFiles/dolfin.dir/fem/PETScDMCollection.cpp.o.d -o CMakeFiles/dolfin.dir/fem/PETScDMCollection.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/PETScDMCollection.cpp /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/PETScDMCollection.cpp: In static member function 'static std::shared_ptr dolfin::PETScDMCollection::create_transfer_matrix(const dolfin::FunctionSpace&, const dolfin::FunctionSpace&)': /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/PETScDMCollection.cpp:545:15: warning: unused variable 'mend' [-Wunused-variable] 545 | std::size_t mend = finemap->ownership_range().second; | ^~~~ make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 21%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/SparsityPatternBuilder.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/SparsityPatternBuilder.cpp.o -MF CMakeFiles/dolfin.dir/fem/SparsityPatternBuilder.cpp.o.d -o CMakeFiles/dolfin.dir/fem/SparsityPatternBuilder.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/SparsityPatternBuilder.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 21%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/SystemAssembler.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/SystemAssembler.cpp.o -MF CMakeFiles/dolfin.dir/fem/SystemAssembler.cpp.o.d -o CMakeFiles/dolfin.dir/fem/SystemAssembler.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/SystemAssembler.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 21%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/UFC.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/UFC.cpp.o -MF CMakeFiles/dolfin.dir/fem/UFC.cpp.o.d -o CMakeFiles/dolfin.dir/fem/UFC.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/UFC.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 23%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/CoefficientAssigner.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/function/CoefficientAssigner.cpp.o -MF CMakeFiles/dolfin.dir/function/CoefficientAssigner.cpp.o.d -o CMakeFiles/dolfin.dir/function/CoefficientAssigner.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/function/CoefficientAssigner.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 23%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/assign.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/function/assign.cpp.o -MF CMakeFiles/dolfin.dir/function/assign.cpp.o.d -o CMakeFiles/dolfin.dir/function/assign.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/function/assign.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 23%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/Constant.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/function/Constant.cpp.o -MF CMakeFiles/dolfin.dir/function/Constant.cpp.o.d -o CMakeFiles/dolfin.dir/function/Constant.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/function/Constant.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 23%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/Expression.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/function/Expression.cpp.o -MF CMakeFiles/dolfin.dir/function/Expression.cpp.o.d -o CMakeFiles/dolfin.dir/function/Expression.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/function/Expression.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 25%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/FunctionAssigner.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/function/FunctionAssigner.cpp.o -MF CMakeFiles/dolfin.dir/function/FunctionAssigner.cpp.o.d -o CMakeFiles/dolfin.dir/function/FunctionAssigner.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/function/FunctionAssigner.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 25%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/FunctionAXPY.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/function/FunctionAXPY.cpp.o -MF CMakeFiles/dolfin.dir/function/FunctionAXPY.cpp.o.d -o CMakeFiles/dolfin.dir/function/FunctionAXPY.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/function/FunctionAXPY.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 25%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/Function.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/function/Function.cpp.o -MF CMakeFiles/dolfin.dir/function/Function.cpp.o.d -o CMakeFiles/dolfin.dir/function/Function.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/function/Function.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 26%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/FunctionSpace.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/function/FunctionSpace.cpp.o -MF CMakeFiles/dolfin.dir/function/FunctionSpace.cpp.o.d -o CMakeFiles/dolfin.dir/function/FunctionSpace.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/function/FunctionSpace.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 26%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/GenericFunction.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/function/GenericFunction.cpp.o -MF CMakeFiles/dolfin.dir/function/GenericFunction.cpp.o.d -o CMakeFiles/dolfin.dir/function/GenericFunction.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/function/GenericFunction.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 26%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/MultiMeshCoefficientAssigner.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/function/MultiMeshCoefficientAssigner.cpp.o -MF CMakeFiles/dolfin.dir/function/MultiMeshCoefficientAssigner.cpp.o.d -o CMakeFiles/dolfin.dir/function/MultiMeshCoefficientAssigner.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/function/MultiMeshCoefficientAssigner.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 26%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/LagrangeInterpolator.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/function/LagrangeInterpolator.cpp.o -MF CMakeFiles/dolfin.dir/function/LagrangeInterpolator.cpp.o.d -o CMakeFiles/dolfin.dir/function/LagrangeInterpolator.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/function/LagrangeInterpolator.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 28%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/MultiMeshFunctionSpace.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/function/MultiMeshFunctionSpace.cpp.o -MF CMakeFiles/dolfin.dir/function/MultiMeshFunctionSpace.cpp.o.d -o CMakeFiles/dolfin.dir/function/MultiMeshFunctionSpace.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/function/MultiMeshFunctionSpace.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 28%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/MultiMeshFunction.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG 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-Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/function/MultiMeshSubSpace.cpp.o -MF CMakeFiles/dolfin.dir/function/MultiMeshSubSpace.cpp.o.d -o CMakeFiles/dolfin.dir/function/MultiMeshSubSpace.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/function/MultiMeshSubSpace.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 29%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/SpecialFacetFunction.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/function/SpecialFacetFunction.cpp.o -MF CMakeFiles/dolfin.dir/function/SpecialFacetFunction.cpp.o.d -o CMakeFiles/dolfin.dir/function/SpecialFacetFunction.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/function/SpecialFacetFunction.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 29%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/SpecialFunctions.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/generation/BoxMesh.cpp.o -MF CMakeFiles/dolfin.dir/generation/BoxMesh.cpp.o.d -o CMakeFiles/dolfin.dir/generation/BoxMesh.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/generation/BoxMesh.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 31%] Building CXX object dolfin/CMakeFiles/dolfin.dir/generation/IntervalMesh.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/generation/IntervalMesh.cpp.o -MF CMakeFiles/dolfin.dir/generation/IntervalMesh.cpp.o.d -o CMakeFiles/dolfin.dir/generation/IntervalMesh.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/generation/IntervalMesh.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 31%] Building CXX object dolfin/CMakeFiles/dolfin.dir/generation/RectangleMesh.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/generation/RectangleMesh.cpp.o -MF CMakeFiles/dolfin.dir/generation/RectangleMesh.cpp.o.d -o CMakeFiles/dolfin.dir/generation/RectangleMesh.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/generation/RectangleMesh.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 31%] Building CXX object dolfin/CMakeFiles/dolfin.dir/generation/SphericalShellMesh.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/generation/SphericalShellMesh.cpp.o -MF CMakeFiles/dolfin.dir/generation/SphericalShellMesh.cpp.o.d -o CMakeFiles/dolfin.dir/generation/SphericalShellMesh.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/generation/SphericalShellMesh.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 31%] Building CXX object dolfin/CMakeFiles/dolfin.dir/generation/UnitDiscMesh.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/generation/UnitDiscMesh.cpp.o -MF CMakeFiles/dolfin.dir/generation/UnitDiscMesh.cpp.o.d -o CMakeFiles/dolfin.dir/generation/UnitDiscMesh.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/generation/UnitDiscMesh.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 32%] Building CXX object dolfin/CMakeFiles/dolfin.dir/generation/UnitTetrahedronMesh.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/generation/UnitTetrahedronMesh.cpp.o -MF CMakeFiles/dolfin.dir/generation/UnitTetrahedronMesh.cpp.o.d -o CMakeFiles/dolfin.dir/generation/UnitTetrahedronMesh.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/generation/UnitTetrahedronMesh.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 32%] Building CXX object dolfin/CMakeFiles/dolfin.dir/generation/UnitTriangleMesh.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/generation/UnitTriangleMesh.cpp.o -MF CMakeFiles/dolfin.dir/generation/UnitTriangleMesh.cpp.o.d -o CMakeFiles/dolfin.dir/generation/UnitTriangleMesh.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/generation/UnitTriangleMesh.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 32%] Building CXX object dolfin/CMakeFiles/dolfin.dir/geometry/BoundingBoxTree.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/geometry/BoundingBoxTree.cpp.o -MF CMakeFiles/dolfin.dir/geometry/BoundingBoxTree.cpp.o.d -o CMakeFiles/dolfin.dir/geometry/BoundingBoxTree.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/geometry/BoundingBoxTree.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 34%] Building CXX object dolfin/CMakeFiles/dolfin.dir/geometry/CollisionPredicates.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/geometry/CollisionPredicates.cpp.o -MF CMakeFiles/dolfin.dir/geometry/CollisionPredicates.cpp.o.d -o CMakeFiles/dolfin.dir/geometry/CollisionPredicates.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/geometry/CollisionPredicates.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 34%] Building CXX object dolfin/CMakeFiles/dolfin.dir/geometry/ConvexTriangulation.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/geometry/ConvexTriangulation.cpp.o -MF CMakeFiles/dolfin.dir/geometry/ConvexTriangulation.cpp.o.d -o CMakeFiles/dolfin.dir/geometry/ConvexTriangulation.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/geometry/ConvexTriangulation.cpp /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/geometry/ConvexTriangulation.cpp: In static member function 'static std::vector > dolfin::ConvexTriangulation::_triangulate_1d(const std::vector&, std::size_t)': /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/geometry/ConvexTriangulation.cpp:238:10: warning: variable 'collinear' set but not used [-Wunused-but-set-variable] 238 | bool collinear = true; | ^~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/geometry/ConvexTriangulation.cpp: In function 'dolfin::ConvexTriangulation::_triangulate_graham_scan_3d(std::vector > const&)': /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/geometry/ConvexTriangulation.cpp:424:46: warning: 'previous_orientation' may be used uninitialized [-Wmaybe-uninitialized] 424 | if (previous_orientation * orientation < 0) | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/geometry/ConvexTriangulation.cpp:400:20: note: 'previous_orientation' was declared here 400 | double previous_orientation; | ^~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 34%] Building CXX object dolfin/CMakeFiles/dolfin.dir/geometry/GeometryDebugging.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/geometry/GeometryDebugging.cpp.o -MF CMakeFiles/dolfin.dir/geometry/GeometryDebugging.cpp.o.d -o CMakeFiles/dolfin.dir/geometry/GeometryDebugging.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/geometry/GeometryDebugging.cpp /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/geometry/GeometryDebugging.cpp: In static member function 'static void dolfin::GeometryDebugging::print(const std::vector&)': /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/geometry/GeometryDebugging.cpp:42:20: warning: loop variable 'p' creates a copy from type 'const dolfin::Point' [-Wrange-loop-construct] 42 | for (const Point p : simplex) | ^ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/geometry/GeometryDebugging.cpp:42:20: note: use reference type to prevent copying 42 | for (const Point p : simplex) | ^ | & /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/geometry/GeometryDebugging.cpp: In static member function 'static void dolfin::GeometryDebugging::print(const std::vector&, const std::vector&)': /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/geometry/GeometryDebugging.cpp:52:20: warning: loop variable 'p' creates a copy from type 'const dolfin::Point' [-Wrange-loop-construct] 52 | for (const Point p : simplex_0) | ^ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/geometry/GeometryDebugging.cpp:52:20: note: use reference type to prevent copying 52 | for (const Point p : simplex_0) | ^ | & /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/geometry/GeometryDebugging.cpp:57:20: warning: loop variable 'p' creates a copy from type 'const dolfin::Point' [-Wrange-loop-construct] 57 | for (const Point p : simplex_1) | ^ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/geometry/GeometryDebugging.cpp:57:20: note: use reference type to prevent copying 57 | for (const Point p : simplex_1) | ^ | & make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 35%] Building CXX object dolfin/CMakeFiles/dolfin.dir/geometry/GeometryPredicates.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/geometry/GeometryPredicates.cpp.o -MF CMakeFiles/dolfin.dir/geometry/GeometryPredicates.cpp.o.d -o CMakeFiles/dolfin.dir/geometry/GeometryPredicates.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/geometry/GeometryPredicates.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 34%] Building CXX object dolfin/CMakeFiles/dolfin.dir/geometry/GenericBoundingBoxTree.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/geometry/GenericBoundingBoxTree.cpp.o -MF CMakeFiles/dolfin.dir/geometry/GenericBoundingBoxTree.cpp.o.d -o CMakeFiles/dolfin.dir/geometry/GenericBoundingBoxTree.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/geometry/GenericBoundingBoxTree.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 35%] Building CXX object dolfin/CMakeFiles/dolfin.dir/geometry/intersect.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/geometry/intersect.cpp.o -MF CMakeFiles/dolfin.dir/geometry/intersect.cpp.o.d -o CMakeFiles/dolfin.dir/geometry/intersect.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/geometry/intersect.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 37%] Building CXX object dolfin/CMakeFiles/dolfin.dir/geometry/MeshPointIntersection.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/geometry/MeshPointIntersection.cpp.o -MF CMakeFiles/dolfin.dir/geometry/MeshPointIntersection.cpp.o.d -o CMakeFiles/dolfin.dir/geometry/MeshPointIntersection.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/geometry/MeshPointIntersection.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 37%] Building CXX object dolfin/CMakeFiles/dolfin.dir/geometry/Point.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/geometry/Point.cpp.o -MF CMakeFiles/dolfin.dir/geometry/Point.cpp.o.d -o CMakeFiles/dolfin.dir/geometry/Point.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/geometry/Point.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 35%] Building CXX object dolfin/CMakeFiles/dolfin.dir/geometry/IntersectionConstruction.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/geometry/IntersectionConstruction.cpp.o -MF CMakeFiles/dolfin.dir/geometry/IntersectionConstruction.cpp.o.d -o CMakeFiles/dolfin.dir/geometry/IntersectionConstruction.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/geometry/IntersectionConstruction.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 37%] Building CXX object dolfin/CMakeFiles/dolfin.dir/geometry/predicates.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/geometry/predicates.cpp.o -MF CMakeFiles/dolfin.dir/geometry/predicates.cpp.o.d -o CMakeFiles/dolfin.dir/geometry/predicates.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/geometry/predicates.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 39%] Building CXX object dolfin/CMakeFiles/dolfin.dir/graph/BoostGraphOrdering.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/graph/BoostGraphOrdering.cpp.o -MF CMakeFiles/dolfin.dir/graph/BoostGraphOrdering.cpp.o.d -o CMakeFiles/dolfin.dir/graph/BoostGraphOrdering.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/graph/BoostGraphOrdering.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 39%] Building CXX object dolfin/CMakeFiles/dolfin.dir/graph/GraphBuilder.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/graph/GraphBuilder.cpp.o -MF CMakeFiles/dolfin.dir/graph/GraphBuilder.cpp.o.d -o CMakeFiles/dolfin.dir/graph/GraphBuilder.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/graph/GraphBuilder.cpp /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/graph/GraphBuilder.cpp: In static member function 'static int32_t dolfin::GraphBuilder::compute_nonlocal_dual_graph(MPI_Comm, const boost::multi_array&, const dolfin::CellType&, int64_t, std::vector >&, FacetCellMap&, std::set&)': /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/graph/GraphBuilder.cpp:364:21: warning: unused variable 'num_vertices_per_cell' [-Wunused-variable] 364 | const std::int8_t num_vertices_per_cell = cell_type.num_entities(0); | ^~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 39%] Building CXX object dolfin/CMakeFiles/dolfin.dir/graph/GraphColoring.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/graph/GraphColoring.cpp.o -MF CMakeFiles/dolfin.dir/graph/GraphColoring.cpp.o.d -o CMakeFiles/dolfin.dir/graph/GraphColoring.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/graph/GraphColoring.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 40%] Building CXX object dolfin/CMakeFiles/dolfin.dir/graph/ParMETIS.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/graph/ParMETIS.cpp.o -MF CMakeFiles/dolfin.dir/graph/ParMETIS.cpp.o.d -o CMakeFiles/dolfin.dir/graph/ParMETIS.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/graph/ParMETIS.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 37%] Building CXX object dolfin/CMakeFiles/dolfin.dir/geometry/SimplexQuadrature.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/geometry/SimplexQuadrature.cpp.o -MF CMakeFiles/dolfin.dir/geometry/SimplexQuadrature.cpp.o.d -o CMakeFiles/dolfin.dir/geometry/SimplexQuadrature.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/geometry/SimplexQuadrature.cpp In file included from /usr/include/eigen3/Eigen/Core:166, from /usr/include/eigen3/Eigen/Dense:1, from /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/geometry/SimplexQuadrature.h:25, from /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/geometry/SimplexQuadrature.cpp:22: In function 'Eigen::internal::aligned_free(void*)', inlined from 'Eigen::internal::conditional_aligned_free(void*)void' at /usr/include/eigen3/Eigen/src/Core/util/Memory.h:259:15, inlined from 'Eigen::internal::conditional_aligned_delete_auto(double*, unsigned long)void' at /usr/include/eigen3/Eigen/src/Core/util/Memory.h:446:34, inlined from 'Eigen::DenseStorage::~DenseStorage()' at /usr/include/eigen3/Eigen/src/Core/DenseStorage.h:621:109, inlined from 'Eigen::PlainObjectBase >::~PlainObjectBase()' at /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:98:7, inlined from 'Eigen::Matrix::~Matrix()' at /usr/include/eigen3/Eigen/src/Core/Matrix.h:178:7, inlined from 'dolfin::SimplexQuadrature::Chebyshev_Vandermonde_matrix(std::pair >, std::vector > > const&, unsigned long, unsigned long)' at /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/geometry/SimplexQuadrature.cpp:598:3: /usr/include/eigen3/Eigen/src/Core/util/Memory.h:203:9: warning: pointer may be used after 'free' [-Wuse-after-free] 203 | free(ptr); | ~~~~^~~~~ In function 'Eigen::internal::aligned_free(void*)', inlined from 'Eigen::internal::conditional_aligned_free(void*)void' at /usr/include/eigen3/Eigen/src/Core/util/Memory.h:259:15, inlined from 'Eigen::internal::conditional_aligned_delete_auto(double*, unsigned long)void' at /usr/include/eigen3/Eigen/src/Core/util/Memory.h:446:34, inlined from 'Eigen::DenseStorage::resize(long, long, long)' at /usr/include/eigen3/Eigen/src/Core/DenseStorage.h:637:77, inlined from 'Eigen::PlainObjectBase >::resize(long, long)' at /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:285:25, inlined from 'Eigen::internal::resize_if_allowed, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const>, double, double>(Eigen::Matrix&, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const&, Eigen::internal::assign_op const&)void' at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:764:15, inlined from 'Eigen::internal::call_dense_assignment_loop, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const>, Eigen::internal::assign_op >(Eigen::Matrix&, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const&, Eigen::internal::assign_op const&)void' at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:778:20, inlined from 'Eigen::internal::Assignment, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const>, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::Matrix&, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const&, Eigen::internal::assign_op const&)' at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:954:31, inlined from 'Eigen::internal::call_assignment_no_alias, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const>, Eigen::internal::assign_op >(Eigen::Matrix&, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const&, Eigen::internal::assign_op const&)void' at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from 'Eigen::internal::call_assignment, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const>, Eigen::internal::assign_op >(Eigen::Matrix&, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const&, Eigen::internal::assign_op const&, Eigen::internal::enable_if, Eigen::Matrix const, Eigen::Matrix const>, Eigen::internal::evaluator_traits, Eigen::Matrix const, Eigen::Matrix const> >::Shape>::value, void*>::type)void' at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:858:27, inlined from 'Eigen::internal::call_assignment, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> >(Eigen::Matrix&, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const&)void' at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:836:18, inlined from 'Eigen::PlainObjectBase >::_set, Eigen::Matrix const, Eigen::Matrix const> >(Eigen::DenseBase, Eigen::Matrix const, Eigen::Matrix const> > const&)Eigen::Matrix&' at /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:779:32, inlined from 'Eigen::Matrix::operator=, Eigen::Matrix const, Eigen::Matrix const> >(Eigen::DenseBase, Eigen::Matrix const, Eigen::Matrix const> > const&)Eigen::Matrix&' at /usr/include/eigen3/Eigen/src/Core/Matrix.h:225:24, inlined from 'dolfin::SimplexQuadrature::Chebyshev_Vandermonde_matrix(std::pair >, std::vector > > const&, unsigned long, unsigned long)' at /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/geometry/SimplexQuadrature.cpp:595:51: /usr/include/eigen3/Eigen/src/Core/util/Memory.h:203:9: note: call to 'free' here 203 | free(ptr); | ~~~~^~~~~ make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 40%] Building CXX object dolfin/CMakeFiles/dolfin.dir/graph/SCOTCH.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/graph/SCOTCH.cpp.o -MF CMakeFiles/dolfin.dir/graph/SCOTCH.cpp.o.d -o CMakeFiles/dolfin.dir/graph/SCOTCH.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/graph/SCOTCH.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 40%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/base64.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/io/base64.cpp.o -MF CMakeFiles/dolfin.dir/io/base64.cpp.o.d -o CMakeFiles/dolfin.dir/io/base64.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/base64.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 40%] Building CXX object dolfin/CMakeFiles/dolfin.dir/graph/ZoltanInterface.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/graph/ZoltanInterface.cpp.o -MF CMakeFiles/dolfin.dir/graph/ZoltanInterface.cpp.o.d -o CMakeFiles/dolfin.dir/graph/ZoltanInterface.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/graph/ZoltanInterface.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 42%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/GenericFile.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/io/GenericFile.cpp.o -MF CMakeFiles/dolfin.dir/io/GenericFile.cpp.o.d -o CMakeFiles/dolfin.dir/io/GenericFile.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/GenericFile.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 42%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/File.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/io/File.cpp.o -MF CMakeFiles/dolfin.dir/io/File.cpp.o.d -o CMakeFiles/dolfin.dir/io/File.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/File.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 42%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/HDF5Attribute.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/io/HDF5Attribute.cpp.o -MF CMakeFiles/dolfin.dir/io/HDF5Attribute.cpp.o.d -o CMakeFiles/dolfin.dir/io/HDF5Attribute.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp In file included from /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:28: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In static member function 'static void dolfin::HDF5Interface::add_attribute_value(hid_t, std::string, const T&) [with T = std::__cxx11::basic_string; hid_t = long int; std::string = std::__cxx11::basic_string]': /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:578:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] 578 | herr_t status = H5Tset_size(datatype_id, attribute_value.size()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In static member function 'static void dolfin::HDF5Interface::get_attribute_value(hid_t, hid_t, T&) [with T = std::__cxx11::basic_string; hid_t = long int]': /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:661:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] 661 | herr_t status = H5Tset_size(memtype, string_length); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of 'static void dolfin::HDF5Interface::add_attribute(hid_t, std::string, std::string, const T&) [with T = double; hid_t = long int; std::string = std::__cxx11::basic_string]': /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:65:31: required from 'void dolfin::HDF5Attribute::set_value(std::string, const T&) [with T = double; std::string = std::__cxx11::basic_string]' /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:95:12: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:486:14: warning: unused variable 'status' [-Wunused-variable] 486 | herr_t status = H5Adelete(dset_id, attribute_name.c_str()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:494:12: warning: unused variable 'status' [-Wunused-variable] 494 | herr_t status = H5Oclose(dset_id); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of 'static void dolfin::HDF5Interface::add_attribute(hid_t, std::string, std::string, const T&) [with T = long unsigned int; hid_t = long int; std::string = std::__cxx11::basic_string]': /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:65:31: required from 'void dolfin::HDF5Attribute::set_value(std::string, const T&) [with T = long unsigned int; std::string = std::__cxx11::basic_string]' /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:101:12: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:486:14: warning: unused variable 'status' [-Wunused-variable] 486 | herr_t status = H5Adelete(dset_id, attribute_name.c_str()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:494:12: warning: unused variable 'status' [-Wunused-variable] 494 | herr_t status = H5Oclose(dset_id); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of 'static void dolfin::HDF5Interface::add_attribute(hid_t, std::string, std::string, const T&) [with T = std::vector; hid_t = long int; std::string = std::__cxx11::basic_string]': /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:65:31: required from 'void dolfin::HDF5Attribute::set_value(std::string, const T&) [with T = std::vector; std::string = std::__cxx11::basic_string]' /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:107:12: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:486:14: warning: unused variable 'status' [-Wunused-variable] 486 | herr_t status = H5Adelete(dset_id, attribute_name.c_str()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:494:12: warning: unused variable 'status' [-Wunused-variable] 494 | herr_t status = H5Oclose(dset_id); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of 'static void dolfin::HDF5Interface::add_attribute(hid_t, std::string, std::string, const T&) [with T = std::vector; hid_t = long int; std::string = std::__cxx11::basic_string]': /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:65:31: required from 'void dolfin::HDF5Attribute::set_value(std::string, const T&) [with T = std::vector; std::string = std::__cxx11::basic_string]' /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:113:12: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:486:14: warning: unused variable 'status' [-Wunused-variable] 486 | herr_t status = H5Adelete(dset_id, attribute_name.c_str()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:494:12: warning: unused variable 'status' [-Wunused-variable] 494 | herr_t status = H5Oclose(dset_id); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of 'static void dolfin::HDF5Interface::add_attribute(hid_t, std::string, std::string, const T&) [with T = std::__cxx11::basic_string; hid_t = long int; std::string = std::__cxx11::basic_string]': /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:65:31: required from 'void dolfin::HDF5Attribute::set_value(std::string, const T&) [with T = std::__cxx11::basic_string; std::string = std::__cxx11::basic_string]' /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:119:12: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:486:14: warning: unused variable 'status' [-Wunused-variable] 486 | herr_t status = H5Adelete(dset_id, attribute_name.c_str()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:494:12: warning: unused variable 'status' [-Wunused-variable] 494 | herr_t status = H5Oclose(dset_id); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of 'static void dolfin::HDF5Interface::get_attribute(hid_t, std::string, std::string, T&) [with T = double; hid_t = long int; std::string = std::__cxx11::basic_string]': /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:88:31: required from 'void dolfin::HDF5Attribute::get_value(std::string, T&) const [with T = double; std::string = std::__cxx11::basic_string]' /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:125:12: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:440:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] 440 | herr_t status; | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of 'static void dolfin::HDF5Interface::get_attribute(hid_t, std::string, std::string, T&) [with T = long unsigned int; hid_t = long int; std::string = std::__cxx11::basic_string]': /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:88:31: required from 'void dolfin::HDF5Attribute::get_value(std::string, T&) const [with T = long unsigned int; std::string = std::__cxx11::basic_string]' /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:131:12: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:440:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of 'static void dolfin::HDF5Interface::get_attribute(hid_t, std::string, std::string, T&) [with T = std::vectormake[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' ; hid_t = long int; std::string = std::__cxx11::basic_string]': /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:88:31: required from 'void dolfin::HDF5Attribute::get_value(std::string, T&) const [with T = std::vector; std::string = std::__cxx11::basic_string]' /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:137:12: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:440:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of 'static void dolfin::HDF5Interface::get_attribute(hid_t, std::string, std::string, T&) [with T = std::vector; hid_t = long int; std::string = std::__cxx11::basic_string]': /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:88:31: required from 'void dolfin::HDF5Attribute::get_value(std::string, T&) const [with T = std::vector; std::string = std::__cxx11::basic_string]' /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:143:12: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:440:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of 'static void dolfin::HDF5Interface::get_attribute(hid_t, std::string, std::string, T&) [with T = std::__cxx11::basic_string; hid_t = long int; std::string = std::__cxx11::basic_string]': /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:88:31: required from 'void dolfin::HDF5Attribute::get_value(std::string, T&) const [with T = std::__cxx11::basic_string; std::string = std::__cxx11::basic_string]' /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:151:14: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:440:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of 'static void dolfin::HDF5Interface::add_attribute_value(hid_t, std::string, const T&) [with T = double; hid_t = long int; std::string = std::__cxx11::basic_string]': /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:491:24: required from 'static void dolfin::HDF5Interface::add_attribute(hid_t, std::string, std::string, const T&) [with T = double; hid_t = long int; std::string = std::__cxx11::basic_string]' /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:65:31: required from 'void dolfin::HDF5Attribute::set_value(std::string, const T&) [with T = double; std::string = std::__cxx11::basic_string]' /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:95:12: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:523:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] 523 | herr_t status = H5Awrite(attribute_id, h5type, &attribute_value); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of 'static void dolfin::HDF5Interface::add_attribute_value(hid_t, std::string, const T&) [with T = long unsigned int; hid_t = long int; std::string = std::__cxx11::basic_string]': /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:491:24: required from 'static void dolfin::HDF5Interface::add_attribute(hid_t, std::string, std::string, const T&) [with T = long unsigned int; hid_t = long int; std::string = std::__cxx11::basic_string]' /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:65:31: required from 'void dolfin::HDF5Attribute::set_value(std::string, const T&) [with T = long unsigned int; std::string = std::__cxx11::basic_string]' /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:101:12: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:523:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of 'static void dolfin::HDF5Interface::add_attribute_value(hid_t, std::string, const std::vector&) [with T = double; hid_t = long int; std::string = std::__cxx11::basic_string]': /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:491:24: required from 'static void dolfin::HDF5Interface::add_attribute(hid_t, std::string, std::string, const T&) [with T = std::vector; hid_t = long int; std::string = std::__cxx11::basic_string]' /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:65:31: required from 'void dolfin::HDF5Attribute::set_value(std::string, const T&) [with T = std::vector; std::string = std::__cxx11::basic_string]' /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:107:12: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:555:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] 555 | herr_t status = H5Awrite(attribute_id, h5type, attribute_value.data()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of 'static void dolfin::HDF5Interface::add_attribute_value(hid_t, std::string, const std::vector&) [with T = long unsigned int; hid_t = long int; std::string = std::__cxx11::basic_string]': /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:491:24: required from 'static void dolfin::HDF5Interface::add_attribute(hid_t, std::string, std::string, const T&) [with T = std::vector; hid_t = long int; std::string = std::__cxx11::basic_string]' /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:65:31: required from 'void dolfin::HDF5Attribute::set_value(std::string, const T&) [with T = std::vector; std::string = std::__cxx11::basic_string]' /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:113:12: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:555:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of 'static void dolfin::HDF5Interface::get_attribute_value(hid_t, hid_t, T&) [with T = double; hid_t = long int]': /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:454:24: required from 'static void dolfin::HDF5Interface::get_attribute(hid_t, std::string, std::string, T&) [with T = double; hid_t = long int; std::string = std::__cxx11::basic_string]' /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:88:31: required from 'void dolfin::HDF5Attribute::get_value(std::string, T&) const [with T = double; std::string = std::__cxx11::basic_string]' /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:125:12: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:615:12: warning: unused variable 'status' [-Wunused-variable] 615 | herr_t status = H5Aread(attr_id, h5type, &attribute_value); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of 'static void dolfin::HDF5Interface::get_attribute_value(hid_t, hid_t, T&) [with T = long unsigned int; hid_t = long int]': /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:454:24: required from 'static void dolfin::HDF5Interface::get_attribute(hid_t, std::string, std::string, T&) [with T = long unsigned int; hid_t = long int; std::string = std::__cxx11::basic_string]' /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:88:31: required from 'void dolfin::HDF5Attribute::get_value(std::string, T&) const [with T = long unsigned int; std::string = std::__cxx11::basic_string]' /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:131:12: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:615:12: warning: unused variable 'status' [-Wunused-variable] /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of 'static void dolfin::HDF5Interface::get_attribute_value(hid_t, hid_t, std::vector&) [with T = double; hid_t = long int]': /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:454:24: required from 'static void dolfin::HDF5Interface::get_attribute(hid_t, std::string, std::string, T&) [with T = std::vector; hid_t = long int; std::string = std::__cxx11::basic_string]' /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:88:31: required from 'void dolfin::HDF5Attribute::get_value(std::string, T&) const [with T = std::vector; std::string = std::__cxx11::basic_string]' /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:137:12: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:636:15: warning: unused variable 'ndims' [-Wunused-variable] 636 | const int ndims = H5Sget_simple_extent_dims(dataspace, cur_size, max_size); | ^~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:642:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] 642 | herr_t status = H5Aread(attr_id, h5type, attribute_value.data()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of 'static void dolfin::HDF5Interface::get_attribute_value(hid_t, hid_t, std::vector&) [with T = long unsigned int; hid_t = long int]': /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:454:24: required from 'static void dolfin::HDF5Interface::get_attribute(hid_t, std::string, std::string, T&) [with T = std::vector; hid_t = long int; std::string = std::__cxx11::basic_string]' /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:88:31: required from 'void dolfin::HDF5Attribute::get_value(std::string, T&) const [with T = std::vector; std::string = std::__cxx11::basic_string]' /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:143:12: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:636:15: warning: unused variable 'ndims' [-Wunused-variable] 636 | const int ndims = H5Sget_simple_extent_dims(dataspace, cur_size, max_size); | ^~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:642:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] 642 | herr_t status = H5Aread(attr_id, h5type, attribute_value.data()); | ^~~~~~ make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 43%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/HDF5Interface.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/io/HDF5Interface.cpp.o -MF CMakeFiles/dolfin.dir/io/HDF5Interface.cpp.o.d -o CMakeFiles/dolfin.dir/io/HDF5Interface.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp In file included from /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.h:30, from /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5File.h:32, from /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp:26: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In static member function 'static void dolfin::HDF5Interface::add_attribute_value(hid_t, std::string, const T&) [with T = std::__cxx11::basic_string; hid_t = long int; std::string = std::__cxx11::basic_string]': /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:578:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] 578 | herr_t status = H5Tset_size(datatype_id, attribute_value.size()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In static member function 'static void dolfin::HDF5Interface::get_attribute_value(hid_t, hid_t, T&) [with T = std::__cxx11::basic_string; hid_t = long int]': /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:661:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] 661 | herr_t status = H5Tset_size(memtype, string_length); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp: In static member function 'static hid_t dolfin::HDF5Interface::open_file(MPI_Comm, std::string, std::string, bool)': /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp:96:10: warning: unused variable 'status' [-Wunused-variable] 96 | herr_t status = H5Pclose(plist_id); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp: In static member function 'static void dolfin::HDF5Interface::close_file(hid_t)': /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp:104:10: warning: unused variable 'status' [-Wunused-variable] 104 | herr_t status = H5Fclose(hdf5_file_handle); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp: In static member function 'static void dolfin::HDF5Interface::flush_file(hid_t)': /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp:110:10: warning: unused variable 'status' [-Wunused-variable] 110 | herr_t status = H5Fflush(hdf5_file_handle, H5F_SCOPE_GLOBAL); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp: In static member function 'static const std::string dolfin::HDF5Interface::get_attribute_type(hid_t, std::string, std::string)': /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp:135:10: warning: variable 'status' set but not used [-Wunused-but-set-variable] 135 | herr_t status; | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp: In static member function 'static void dolfin::HDF5Interface::delete_attribute(hid_t, std::string, std::string)': /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp:196:10: warning: variable 'status' set but not used [-Wunused-but-set-variable] 196 | herr_t status; | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp: In static member function 'static const std::vector > dolfin::HDF5Interface::list_attributes(hid_t, std::string)': /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp:234:10: warning: variable 'status' set but not used [-Wunused-but-set-variable] 234 | herr_t status = H5Aiterate2(dset_id, H5_INDEX_NAME, H5_ITER_INC, &n, | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp: In static member function 'static bool dolfin::HDF5Interface::has_attribute(hid_t, std::string, std::string)': /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp:250:10: warning: variable 'status' set but not used [-Wunused-but-set-variable] 250 | herr_t status; | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp: In static member function 'static bool dolfin::HDF5Interface::has_group(hid_t, std::string)': /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp:272:10: warning: variable 'status' set but not used [-Wunused-but-set-variable] 272 | herr_t status; | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp: In static member function 'static bool dolfin::HDF5Interface::has_dataset(hid_t, std::string)': /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp:303:10: warning: unused variable 'status' [-Wunused-variable] 303 | herr_t status = H5Pclose(lapl_id); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp: In static member function 'static void dolfin::HDF5Interface::add_group(hid_t, std::string)': /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp:336:14: warning: unused variable 'status' [-Wunused-variable] 336 | herr_t status = H5Gclose(group_id_vis); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp: In static member function 'static int dolfin::HDF5Interface::dataset_rank(hid_t, std::string)': /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp:359:10: warning: variable 'status' set but not used [-Wunused-but-set-variable] 359 | herr_t status = H5Sclose(space); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp: In static member function 'static std::vector dolfin::HDF5Interface::get_dataset_shape(hid_t, std::string)': /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp:387:13: warning: unused variable 'ndims' [-Wunused-variable] 387 | const int ndims = H5Sget_simple_extent_dims(space, size.data(), NULL); | ^~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp:391:10: warning: variable 'status' set but not used [-Wunused-but-set-variable] 391 | herr_t status = H5Sclose(space); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp: In static member function 'static int dolfin::HDF5Interface::num_datasets_in_group(hid_t, std::string)': /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp:405:10: warning: unused variable 'status' [-Wunused-variable] 405 | herr_t status = H5Gget_info_by_name(hdf5_file_handle, group_name.c_str(), | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp: In static member function 'static std::vector > dolfin::HDF5Interface::dataset_list(hid_t, std::string)': /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp:418:10: warning: variable 'status' set but not used [-Wunused-but-set-variable] 418 | herr_t status; | ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 43%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/HDF5Utility.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/io/HDF5Utility.cpp.o -MF CMakeFiles/dolfin.dir/io/HDF5Utility.cpp.o.d -o CMakeFiles/dolfin.dir/io/HDF5Utility.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Utility.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 45%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/pugixml.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/io/pugixml.cpp.o -MF CMakeFiles/dolfin.dir/io/pugixml.cpp.o.d -o CMakeFiles/dolfin.dir/io/pugixml.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/pugixml.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 43%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/HDF5File.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/io/HDF5File.cpp.o -MF CMakeFiles/dolfin.dir/io/HDF5File.cpp.o.d -o CMakeFiles/dolfin.dir/io/HDF5File.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp In file included from /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.h:30, from /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:50: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In static member function 'static void dolfin::HDF5Interface::add_attribute_value(hid_t, std::string, const T&) [with T = std::__cxx11::basic_string; hid_t = long int; std::string = std::__cxx11::basic_string]': /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:578:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] 578 | herr_t status = H5Tset_size(datatype_id, attribute_value.size()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In static member function 'static void dolfin::HDF5Interface::get_attribute_value(hid_t, hid_t, T&) [with T = std::__cxx11::basic_string; hid_t = long int]': /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:661:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] 661 | herr_t status = H5Tset_size(memtype, string_length); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp: In member function 'void dolfin::HDF5File::write(const dolfin::Mesh&, std::size_t, std::string)': /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:446:24: warning: unused variable 'num_cells' [-Wunused-variable] 446 | const std::int64_t num_cells | ^~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp: In member function 'void dolfin::HDF5File::write(const dolfin::Function&, std::string)': /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:918:30: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = plus; _Tp = long unsigned int]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 918 | std::bind2nd(std::plus(), offset)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/bits/stl_function.h:1438, from /usr/include/c++/12/string:48, from /usr/include/c++/12/bits/locale_classes.h:40, from /usr/include/c++/12/bits/ios_base.h:41, from /usr/include/c++/12/ios:42, from /usr/include/c++/12/istream:38, from /usr/include/c++/12/fstream:38, from /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:23: /usr/include/c++/12/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp: In member function 'void dolfin::HDF5File::read(dolfin::Function&, std::string)': /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:1067:21: warning: unused variable 'num_global_dofs' [-Wunused-variable] 1067 | const std::size_t num_global_dofs = vector_shape[0]; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of 'static void dolfin::HDF5Interface::write_dataset(hid_t, std::string, const std::vector&, std::pair, std::vector, bool, bool) [with T = double; hid_t = long int; std::string = std::__cxx11::basic_string]': /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:172:31: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:266:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] 266 | herr_t status; | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of 'static void dolfin::HDF5Interface::add_attribute(hid_t, std::string, std::string, const T&) [with T = std::vector; hid_t = long int; std::string = std::__cxx11::basic_string]': /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:181:31: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:486:14: warning: unused variable 'status' [-Wunused-variable] 486 | herr_t status = H5Adelete(dset_id, attribute_name.c_str()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:494:12: warning: unused variable 'status' [-Wunused-variable] 494 | herr_t status = H5Oclose(dset_id); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of 'static void dolfin::HDF5Interface::get_attribute(hid_t, std::string, std::string, T&) [with T = std::vector; hid_t = long int; std::string = std::__cxx11::basic_string]': /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:222:35: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:440:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] 440 | herr_t status; | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of 'static void dolfin::HDF5Interface::read_dataset(hid_t, std::string, std::pair, std::vector&) [with T = double; hid_t = long int; std::string = std::__cxx11::basic_string]': /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:257:30: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:384:15: warning: unused variable 'ndims' [-Wunused-variable] 384 | const int ndims = H5Sget_simple_extent_dims(dataspace, shape.data(), NULL); | ^~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:400:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] 400 | herr_t status = H5Sselect_hyperslab(dataspace, H5S_SELECT_SET, | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of 'static void dolfin::HDF5Interface::add_attribute(hid_t, std::string, std::string, const T&) [with T = std::__cxx11::basic_string; hid_t = long int; std::string = std::__cxx11::basic_string]': /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:465:33: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:486:14: warning: unused variable 'status' [-Wunused-variable] 486 | herr_t status = H5Adelete(dset_id, attribute_name.c_str()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:494:12: warning: unused variable 'status' [-Wunused-variable] 494 | herr_t status = H5Oclose(dset_id); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of 'static void dolfin::HDF5Interface::read_dataset(hid_t, std::string, std::pair, std::vector&) [with T = long unsigned int; hid_t = long int; std::string = std::__cxx11::basic_string]': /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:1046:30: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:384:15: warning: unused variable 'ndims' [-Wunused-variable] 384 | const int ndims = H5Sget_simple_extent_dims(dataspace, shape.data(), NULL); | ^~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:400:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] 400 | herr_t status = H5Sselect_hyperslab(dataspace, H5S_SELECT_SET, | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of 'static void dolfin::HDF5Interface::read_dataset(hid_t, std::string, std::pair, std::vector&) [with T = int; hid_t = long int; std::string = std::__cxx11::basic_string]make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' ': /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:1058:30: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:384:15: warning: unused variable 'ndims' [-Wunused-variable] 384 | const int ndims = H5Sget_simple_extent_dims(dataspace, shape.data(), NULL); | ^~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:400:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] 400 | herr_t status = H5Sselect_hyperslab(dataspace, H5S_SELECT_SET, | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of 'static void dolfin::HDF5Interface::get_attribute(hid_t, std::string, std::string, T&) [with T = std::__cxx11::basic_string; hid_t = long int; std::string = std::__cxx11::basic_string]': /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:1640:33: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:440:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] 440 | herr_t status; | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of 'static void dolfin::HDF5Interface::read_dataset(hid_t, std::string, std::pair, std::vector&) [with T = long int; hid_t = long int; std::string = std::__cxx11::basic_string]': /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:1820:30: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:384:15: warning: unused variable 'ndims' [-Wunused-variable] 384 | const int ndims = H5Sget_simple_extent_dims(dataspace, shape.data(), NULL); | ^~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:400:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] 400 | herr_t status = H5Sselect_hyperslab(dataspace, H5S_SELECT_SET, | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of 'static void dolfin::HDF5Interface::add_attribute_value(hid_t, std::string, const std::vector&) [with T = long unsigned int; hid_t = long int; std::string = std::__cxx11::basic_string]': /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:491:24: required from 'static void dolfin::HDF5Interface::add_attribute(hid_t, std::string, std::string, const T&) [with T = std::vector; hid_t = long int; std::string = std::__cxx11::basic_string]' /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:181:31: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:555:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] 555 | herr_t status = H5Awrite(attribute_id, h5type, attribute_value.data()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of 'static void dolfin::HDF5Interface::get_attribute_value(hid_t, hid_t, std::vector&) [with T = long unsigned int; hid_t = long int]': /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:454:24: required from 'static void dolfin::HDF5Interface::get_attribute(hid_t, std::string, std::string, T&) [with T = std::vector; hid_t = long int; std::string = std::__cxx11::basic_string]' /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:222:35: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:636:15: warning: unused variable 'ndims' [-Wunused-variable] 636 | const int ndims = H5Sget_simple_extent_dims(dataspace, cur_size, max_size); | ^~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:642:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] 642 | herr_t status = H5Aread(attr_id, h5type, attribute_value.data()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of 'static void dolfin::HDF5Interface::write_dataset(hid_t, std::string, const std::vector&, std::pair, std::vector, bool, bool) [with T = long int; hid_t = long int; std::string = std::__cxx11::basic_string]': /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5File.h:277:33: required from 'void dolfin::HDF5File::write_data(std::string, const std::vector&, std::vector, bool) [with T = long int; std::string = std::__cxx11::basic_string]' /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:450:15: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:266:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] 266 | herr_t status; | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of 'static void dolfin::HDF5Interface::write_dataset(hid_t, std::string, const std::vector&, std::pair, std::vector, bool, bool) [with T = int; hid_t = long int; std::string = std::__cxx11::basic_string]': /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5File.h:277:33: required from 'void dolfin::HDF5File::write_data(std::string, const std::vector&, std::vector, bool) [with T = int; std::string = std::__cxx11::basic_string]' /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:925:13: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:266:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of 'static void dolfin::HDF5Interface::write_dataset(hid_t, std::string, const std::vector&, std::pair, std::vector, bool, bool) [with T = long unsigned int; hid_t = long int; std::string = std::__cxx11::basic_string]': /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5File.h:277:33: required from 'void dolfin::HDF5File::write_data(std::string, const std::vector&, std::vector, bool) [with T = long unsigned int; std::string = std::__cxx11::basic_string]' /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:929:13: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:266:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of 'static void dolfin::HDF5Interface::add_attribute(hid_t, std::string, std::string, const T&) [with T = long unsigned int; hid_t = long int; std::string = std::__cxx11::basic_string]': /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:1191:31: required from 'void dolfin::HDF5File::write_mesh_value_collection(const dolfin::MeshValueCollection&, std::string) [with T = long unsigned int; std::string = std::__cxx11::basic_string]' /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:1085:30: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:486:14: warning: unused variable 'status' [-Wunused-variable] 486 | herr_t status = H5Adelete(dset_id, attribute_name.c_str()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:494:12: warning: unused variable 'status' [-Wunused-variable] 494 | herr_t status = H5Oclose(dset_id); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of 'static void dolfin::HDF5Interface::get_attribute(hid_t, std::string, std::string, T&) [with T = long unsigned int; hid_t = long int; std::string = std::__cxx11::basic_string]': /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:1257:31: required from 'void dolfin::HDF5File::read_mesh_value_collection(dolfin::MeshValueCollection&, std::string) const [with T = long unsigned int; std::string = std::__cxx11::basic_string]' /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:1091:29: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:440:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] 440 | herr_t status; | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of 'static void dolfin::HDF5Interface::add_attribute_value(hid_t, std::string, const T&) [with T = long unsigned int; hid_t = long int; std::string = std::__cxx11::basic_string]': /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:491:24: required from 'static void dolfin::HDF5Interface::add_attribute(hid_t, std::string, std::string, const T&) [with T = long unsigned int; hid_t = long int; std::string = std::__cxx11::basic_string]' /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:1191:31: required from 'void dolfin::HDF5File::write_mesh_value_collection(const dolfin::MeshValueCollection&, std::string) [with T = long unsigned int; std::string = std::__cxx11::basic_string]' /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:1085:30: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:523:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] 523 | herr_t status = H5Awrite(attribute_id, h5type, &attribute_value); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of 'static void dolfin::HDF5Interface::get_attribute_value(hid_t, hid_t, T&) [with T = long unsigned int; hid_t = long int]': /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:454:24: required from 'static void dolfin::HDF5Interface::get_attribute(hid_t, std::string, std::string, T&) [with T = long unsigned int; hid_t = long int; std::string = std::__cxx11::basic_string]' /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:1257:31: required from 'void dolfin::HDF5File::read_mesh_value_collection(dolfin::MeshValueCollection&, std::string) const [with T = long unsigned int; std::string = std::__cxx11::basic_string]' /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:1091:29: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:615:12: warning: unused variable 'status' [-Wunused-variable] 615 | herr_t status = H5Aread(attr_id, h5type, &attribute_value); | ^~~~~~ make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 45%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/RAWFile.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/io/RAWFile.cpp.o -MF CMakeFiles/dolfin.dir/io/RAWFile.cpp.o.d -o CMakeFiles/dolfin.dir/io/RAWFile.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/RAWFile.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 45%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/SVGFile.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/io/SVGFile.cpp.o -MF CMakeFiles/dolfin.dir/io/SVGFile.cpp.o.d -o CMakeFiles/dolfin.dir/io/SVGFile.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/SVGFile.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 46%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/VTKWriter.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/io/VTKWriter.cpp.o -MF CMakeFiles/dolfin.dir/io/VTKWriter.cpp.o.d -o CMakeFiles/dolfin.dir/io/VTKWriter.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/VTKWriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 45%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/VTKFile.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/io/VTKFile.cpp.o -MF CMakeFiles/dolfin.dir/io/VTKFile.cpp.o.d -o CMakeFiles/dolfin.dir/io/VTKFile.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/VTKFile.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 46%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/X3DFile.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/io/X3DFile.cpp.o -MF CMakeFiles/dolfin.dir/io/X3DFile.cpp.o.d -o CMakeFiles/dolfin.dir/io/X3DFile.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/X3DFile.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 46%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/X3DOM.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/io/X3DOM.cpp.o -MF CMakeFiles/dolfin.dir/io/X3DOM.cpp.o.d -o CMakeFiles/dolfin.dir/io/X3DOM.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/X3DOM.cpp /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/X3DOM.cpp: In static member function 'static void dolfin::X3DOM::add_menu_color_tab(pugi::xml_node&)': /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/X3DOM.cpp:933:18: warning: variable 'br_node' set but not used [-Wunused-but-set-variable] 933 | pugi::xml_node br_node = xml_node.append_child("br"); | ^~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 48%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/XMLFile.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/io/XMLFile.cpp.o -MF CMakeFiles/dolfin.dir/io/XMLFile.cpp.o.d -o CMakeFiles/dolfin.dir/io/XMLFile.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XMLFile.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 48%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/XMLFunctionData.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/io/XMLFunctionData.cpp.o -MF CMakeFiles/dolfin.dir/io/XMLFunctionData.cpp.o.d -o CMakeFiles/dolfin.dir/io/XMLFunctionData.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XMLFunctionData.cpp /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XMLFunctionData.cpp: In static member function 'static void dolfin::XMLFunctionData::build_global_to_cell_dof(std::vector > >&, const dolfin::FunctionSpace&)': /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XMLFunctionData.cpp:212:23: warning: unused variable 'D' [-Wunused-variable] 212 | const std::size_t D = mesh.topology().dim(); | ^ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XMLFunctionData.cpp: In static member function 'static void dolfin::XMLFunctionData::build_dof_map(std::vector >&, const dolfin::FunctionSpace&)': /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XMLFunctionData.cpp:291:23: warning: unused variable 'D' [-Wunused-variable] 291 | const std::size_t D = mesh.topology().dim(); | ^ make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 48%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/XDMFFile.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/io/XDMFFile.cpp.o -MF CMakeFiles/dolfin.dir/io/XDMFFile.cpp.o.d -o CMakeFiles/dolfin.dir/io/XDMFFile.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp In file included from /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.h:30, from /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5File.h:32, from /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:51: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In static member function 'static void dolfin::HDF5Interface::add_attribute_value(hid_t, std::string, const T&) [with T = std::__cxx11::basic_string; hid_t = long int; std::string = std::__cxx11::basic_string]': /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:578:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] 578 | herr_t status = H5Tset_size(datatype_id, attribute_value.size()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In static member function 'static void dolfin::HDF5Interface::get_attribute_value(hid_t, hid_t, T&) [with T = std::__cxx11::basic_string; hid_t = long int]': /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:661:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] 661 | herr_t status = H5Tset_size(memtype, string_length); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp: In member function 'void dolfin::XDMFFile::write_checkpoint(const dolfin::Function&, std::string, double, Encoding, bool)': /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:152:28: warning: variable 'result' set but not used [-Wunused-but-set-variable] 152 | pugi::xml_parse_result result = _xml_doc->load_file(_filename.c_str()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:184:20: warning: variable 'domain_node' set but not used [-Wunused-but-set-variable] 184 | pugi::xml_node domain_node = xdmf_node.append_child("Domain"); | ^~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp: In member function 'void dolfin::XDMFFile::write(const dolfin::Function&, double, Encoding)': /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:417:20: warning: variable 'domain_node' set but not used [-Wunused-but-set-variable] 417 | pugi::xml_node domain_node = xdmf_node.append_child("Domain"); | ^~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp: In static member function 'static void dolfin::XDMFFile::add_function(MPI_Comm, pugi::xml_node&, hid_t, std::string, const dolfin::Function&, std::string, const dolfin::Mesh&)': /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:1268:30: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = plus; _Tp = long unsigned int]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 1268 | std::bind2nd(std::plus(), offset)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/bits/stl_function.h:1438, from /usr/include/c++/12/string:48, from /usr/include/c++/12/bits/locale_classes.h:40, from /usr/include/c++/12/bits/ios_base.h:41, from /usr/include/c++/12/iomanip:40, from /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:20: /usr/include/c++/12/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp: In member function 'void dolfin::XDMFFile::read(dolfin::Mesh&) const': /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:1326:26: warning: variable 'result' set but not used [-Wunused-but-set-variable] 1326 | pugi::xml_parse_result result = xml_doc.load_file(_filename.c_str()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp: In member function 'void dolfin::XDMFFile::read_checkpoint(dolfin::Function&, std::string, int64_t)': /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:1445:26: warning: variable 'result' set but not used [-Wunused-but-set-variable] 1445 | pugi::xml_parse_result result = xml_doc.load_file(_filename.c_str()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp: In static member function 'static void dolfin::XDMFFile::build_mesh_quadratic(dolfin::Mesh&, const dolfin::CellType&, int64_t, int64_t, int, int, const pugi::xml_node&, const pugi::xml_node&, const boost::filesystem::path&)': /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:1566:13: warning: unused variable 'num_edges_per_cell' [-Wunused-variable] 1566 | const int num_edges_per_cell = cell_type.num_entities(1); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp: In instantiation of 'void dolfin::XDMFFile::read_mesh_value_collection(dolfin::MeshValueCollection&, std::string) [with T = int; std::string = std::__cxx11::basic_string]': /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:778:29: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:806:26: warning: variable 'result' set but not used [-Wunused-but-set-variable] 806 | pugi::xml_parse_result result = xml_doc.load_file(_filename.c_str()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp: In instantiation of 'void dolfin::XDMFFile::read_mesh_value_collection(dolfin::MeshValueCollection&, std::string) [with T = long unsigned int; std::string = std::__cxx11::basic_string]': /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:792:29: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:806:26: warning: variable 'result' set but not used [-Wunused-but-set-variable] /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp: In instantiation of 'void dolfin::XDMFFile::read_mesh_value_collection(dolfin::MeshValueCollection&, std::string) [with T = double; std::string = std::__cxx11::basic_string]': /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:797:29: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:806:26: warning: variable 'result' set but not used [-Wunused-but-set-variable] /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp: In instantiation of 'void dolfin::XDMFFile::read_mesh_function(dolfin::MeshFunction&, std::string) [with T = long unsigned int; std::string = std::__cxx11::basic_string]': /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:1119:21: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:2435:26: warning: variable 'result' set but not used [-Wunused-but-set-variable] 2435 | pugi::xml_parse_result result = xml_doc.load_file(_filename.c_str()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:2508:22: warning: unused variable 'num_vertices_per_cell' [-Wunused-variable] 2508 | const unsigned int num_vertices_per_cell = cell_type->num_entities(0); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp: In instantiation of 'void dolfin::XDMFFile::read_mesh_function(dolfin::MeshFunction&, std::string) [with T = int; std::string = std::__cxx11::basic_string]': /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:1127:21: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:2435:26: warning: variable 'result' set but not used [-Wunused-but-set-variable] 2435 | pugi::xml_parse_result result = xml_doc.load_file(_filename.c_str()); | ^~~~~~ /bumake[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' ilddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:2508:22: warning: unused variable 'num_vertices_per_cell' [-Wunused-variable] 2508 | const unsigned int num_vertices_per_cell = cell_type->num_entities(0); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp: In instantiation of 'void dolfin::XDMFFile::read_mesh_function(dolfin::MeshFunction&, std::string) [with T = double; std::string = std::__cxx11::basic_string]': /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:1137:21: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:2435:26: warning: variable 'result' set but not used [-Wunused-but-set-variable] 2435 | pugi::xml_parse_result result = xml_doc.load_file(_filename.c_str()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:2508:22: warning: unused variable 'num_vertices_per_cell' [-Wunused-variable] 2508 | const unsigned int num_vertices_per_cell = cell_type->num_entities(0); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of 'static void dolfin::HDF5Interface::write_dataset(hid_t, std::string, const std::vector&, std::pair, std::vector, bool, bool) [with T = int; hid_t = long int; std::string = std::__cxx11::basic_string]': /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:1941:33: required from 'static void dolfin::XDMFFile::add_data_item(MPI_Comm, pugi::xml_node&, hid_t, std::string, const T&, std::vector, std::string) [with T = std::vector; MPI_Comm = int; hid_t = long int; std::string = std::__cxx11::basic_string]' /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.h:606:18: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:266:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] 266 | herr_t status; | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of 'static void dolfin::HDF5Interface::add_attribute(hid_t, std::string, std::string, const T&) [with T = std::vector; hid_t = long int; std::string = std::__cxx11::basic_string]': /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:1949:33: required from 'static void dolfin::XDMFFile::add_data_item(MPI_Comm, pugi::xml_node&, hid_t, std::string, const T&, std::vector, std::string) [with T = std::vector; MPI_Comm = int; hid_t = long int; std::string = std::__cxx11::basic_string]' /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.h:606:18: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:486:14: warning: unused variable 'status' [-Wunused-variable] 486 | herr_t status = H5Adelete(dset_id, attribute_name.c_str()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:494:12: warning: unused variable 'status' [-Wunused-variable] 494 | herr_t status = H5Oclose(dset_id); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of 'static void dolfin::HDF5Interface::write_dataset(hid_t, std::string, const std::vector&, std::pair, std::vector, bool, bool) [with T = double; hid_t = long int; std::string = std::__cxx11::basic_string]': /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:1941:33: required from 'static void dolfin::XDMFFile::add_data_item(MPI_Comm, pugi::xml_node&, hid_t, std::string, const T&, std::vector, std::string) [with T = std::vector; MPI_Comm = int; hid_t = long int; std::string = std::__cxx11::basic_string]' /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:391:16: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:266:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] 266 | herr_t status; | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of 'static void dolfin::HDF5Interface::write_dataset(hid_t, std::string, const std::vector&, std::pair, std::vector, bool, bool) [with T = long unsigned int; hid_t = long int; std::string = std::__cxx11::basic_string]': /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:1941:33: required from 'static void dolfin::XDMFFile::add_data_item(MPI_Comm, pugi::xml_node&, hid_t, std::string, const T&, std::vector, std::string) [with T = std::vector; MPI_Comm = int; hid_t = long int; std::string = std::__cxx11::basic_string]' /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:1293:16: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:266:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of 'static void dolfin::HDF5Interface::read_dataset(hid_t, std::string, std::pair, std::vector&) [with T = long unsigned int; hid_t = long int; std::string = std::__cxx11::basic_string]': /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:2363:32: required from 'static std::vector dolfin::XDMFFile::get_dataset(MPI_Comm, const pugi::xml_node&, const boost::filesystem::path&, std::pair) [with T = long unsigned int; MPI_Comm = int]' /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:1509:31: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:384:15: warning: unused variable 'ndims' [-Wunused-variable] 384 | const int ndims = H5Sget_simple_extent_dims(dataspace, shape.data(), NULL); | ^~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:400:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] 400 | herr_t status = H5Sselect_hyperslab(dataspace, H5S_SELECT_SET, | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of 'static void dolfin::HDF5Interface::read_dataset(hid_t, std::string, std::pair, std::vector&) [with T = int; hid_t = long int; std::string = std::__cxx11::basic_string]': /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:2363:32: required from 'static std::vector dolfin::XDMFFile::get_dataset(MPI_Comm, const pugi::xml_node&, const boost::filesystem::path&, std::pair) [with T = int; MPI_Comm = int]' /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:1526:36: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:384:15: warning: unused variable 'ndims' [-Wunused-variable] 384 | const int ndims = H5Sget_simple_extent_dims(dataspace, shape.data(), NULL); | ^~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:400:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] 400 | herr_t status = H5Sselect_hyperslab(dataspace, H5S_SELECT_SET, | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of 'static void dolfin::HDF5Interface::read_dataset(hid_t, std::string, std::pair, std::vector&) [with T = double; hid_t = long int; std::string = std::__cxx11::basic_string]': /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:2363:32: required from 'static std::vector dolfin::XDMFFile::get_dataset(MPI_Comm, const pugi::xml_node&, const boost::filesystem::path&, std::pair) [with T = double; MPI_Comm = int]' /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:1541:26: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:384:15: warning: unused variable 'ndims' [-Wunused-variable] 384 | const int ndims = H5Sget_simple_extent_dims(dataspace, shape.data(), NULL); | ^~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:400:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] 400 | herr_t status = H5Sselect_hyperslab(dataspace, H5S_SELECT_SET, | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of 'static void dolfin::HDF5Interface::read_dataset(hid_t, std::string, std::pair, std::vector&) [with T = long int; hid_t = long int; std::string = std::__cxx11::basic_string]': /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:2363:32: required from 'static std::vector dolfin::XDMFFile::get_dataset(MPI_Comm, const pugi::xml_node&, const boost::filesystem::path&, std::pair) [with T = long int; MPI_Comm = int]' /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:1729:55: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:384:15: warning: unused variable 'ndims' [-Wunused-variable] 384 | const int ndims = H5Sget_simple_extent_dims(dataspace, shape.data(), NULL); | ^~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:400:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] 400 | herr_t status = H5Sselect_hyperslab(dataspace, H5S_SELECT_SET, | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of 'static void dolfin::HDF5Interface::add_attribute_value(hid_t, std::string, const std::vector&) [with T = long unsigned int; hid_t = long int; std::string = std::__cxx11::basic_string]': /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:491:24: required from 'static void dolfin::HDF5Interface::add_attribute(hid_t, std::string, std::string, const T&) [with T = std::vector; hid_t = long int; std::string = std::__cxx11::basic_string]' /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:1949:33: required from 'static void dolfin::XDMFFile::add_data_item(MPI_Comm, pugi::xml_node&, hid_t, std::string, const T&, std::vector, std::string) [with T = std::vector; MPI_Comm = int; hid_t = long int; std::string = std::__cxx11::basic_string]' /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.h:606:18: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:555:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] 555 | herr_t status = H5Awrite(attribute_id, h5type, attribute_value.data()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of 'static void dolfin::HDF5Interface::write_dataset(hid_t, std::string, const std::vector&, std::pair, std::vector, bool, bool) [with T = long int; hid_t = long int; std::string = std::__cxx11::basic_string]': /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:1941:33: required from 'static void dolfin::XDMFFile::add_data_item(MPI_Comm, pugi::xml_node&, hid_t, std::string, const T&, std::vector, std::string) [with T = std::vector; MPI_Comm = int; hid_t = long int; std::string = std::__cxx11::basic_string]' /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:1827:16: required from 'static void dolfin::XDMFFile::add_topology_data(MPI_Comm, pugi::xml_node&, hid_t, std::string, const dolfin::Mesh&, int) [with T = long int; MPI_Comm = int; hid_t = long int; std::string = std::__cxx11::basic_string]' /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:1159:36: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:266:12: warning: variable 'status' set but not used [-Wunused-but-set-variable] 266 | herr_t status; | ^~~~~~ make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 50%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/XMLParameters.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/io/XMLParameters.cpp.o -MF CMakeFiles/dolfin.dir/io/XMLParameters.cpp.o.d -o CMakeFiles/dolfin.dir/io/XMLParameters.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XMLParameters.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 50%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/XMLTable.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/io/XMLTable.cpp.o -MF CMakeFiles/dolfin.dir/io/XMLTable.cpp.o.d -o CMakeFiles/dolfin.dir/io/XMLTable.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XMLTable.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 50%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/xmlutils.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/io/xmlutils.cpp.o -MF CMakeFiles/dolfin.dir/io/xmlutils.cpp.o.d -o CMakeFiles/dolfin.dir/io/xmlutils.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/xmlutils.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 48%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/XMLMesh.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/io/XMLMesh.cpp.o -MF CMakeFiles/dolfin.dir/io/XMLMesh.cpp.o.d -o CMakeFiles/dolfin.dir/io/XMLMesh.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XMLMesh.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 51%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/XYZFile.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/io/XYZFile.cpp.o -MF CMakeFiles/dolfin.dir/io/XYZFile.cpp.o.d -o CMakeFiles/dolfin.dir/io/XYZFile.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XYZFile.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 51%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/Amesos2LUSolver.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/la/Amesos2LUSolver.cpp.o -MF CMakeFiles/dolfin.dir/la/Amesos2LUSolver.cpp.o.d -o CMakeFiles/dolfin.dir/la/Amesos2LUSolver.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/Amesos2LUSolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 51%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/BelosKrylovSolver.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/la/BelosKrylovSolver.cpp.o -MF CMakeFiles/dolfin.dir/la/BelosKrylovSolver.cpp.o.d -o CMakeFiles/dolfin.dir/la/BelosKrylovSolver.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/BelosKrylovSolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 51%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/XMLVector.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/io/XMLVector.cpp.o -MF CMakeFiles/dolfin.dir/io/XMLVector.cpp.o.d -o CMakeFiles/dolfin.dir/io/XMLVector.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/XMLVector.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 53%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/BlockMatrix.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/la/BlockMatrix.cpp.o -MF CMakeFiles/dolfin.dir/la/BlockMatrix.cpp.o.d -o CMakeFiles/dolfin.dir/la/BlockMatrix.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/BlockMatrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 53%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/BlockVector.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/la/BlockVector.cpp.o -MF CMakeFiles/dolfin.dir/la/BlockVector.cpp.o.d -o CMakeFiles/dolfin.dir/la/BlockVector.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/BlockVector.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 53%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/CoordinateMatrix.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/la/CoordinateMatrix.cpp.o -MF CMakeFiles/dolfin.dir/la/CoordinateMatrix.cpp.o.d -o CMakeFiles/dolfin.dir/la/CoordinateMatrix.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/CoordinateMatrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 54%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/DefaultFactory.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/la/DefaultFactory.cpp.o -MF CMakeFiles/dolfin.dir/la/DefaultFactory.cpp.o.d -o CMakeFiles/dolfin.dir/la/DefaultFactory.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/DefaultFactory.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 54%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/EigenFactory.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/la/EigenFactory.cpp.o -MF CMakeFiles/dolfin.dir/la/EigenFactory.cpp.o.d -o CMakeFiles/dolfin.dir/la/EigenFactory.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/EigenFactory.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 54%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/EigenLUSolver.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/la/EigenLUSolver.cpp.o -MF CMakeFiles/dolfin.dir/la/EigenLUSolver.cpp.o.d -o CMakeFiles/dolfin.dir/la/EigenLUSolver.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/EigenLUSolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 54%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/EigenKrylovSolver.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/la/EigenKrylovSolver.cpp.o -MF CMakeFiles/dolfin.dir/la/EigenKrylovSolver.cpp.o.d -o CMakeFiles/dolfin.dir/la/EigenKrylovSolver.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/EigenKrylovSolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 56%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/EigenMatrix.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/la/EigenMatrix.cpp.o -MF CMakeFiles/dolfin.dir/la/EigenMatrix.cpp.o.d -o CMakeFiles/dolfin.dir/la/EigenMatrix.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/EigenMatrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 56%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/GenericLinearSolver.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/la/GenericLinearSolver.cpp.o -MF CMakeFiles/dolfin.dir/la/GenericLinearSolver.cpp.o.d -o CMakeFiles/dolfin.dir/la/GenericLinearSolver.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/GenericLinearSolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 56%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/EigenVector.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/la/EigenVector.cpp.o -MF CMakeFiles/dolfin.dir/la/EigenVector.cpp.o.d -o CMakeFiles/dolfin.dir/la/EigenVector.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/EigenVector.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 57%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/Ifpack2Preconditioner.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/la/Ifpack2Preconditioner.cpp.o -MF CMakeFiles/dolfin.dir/la/Ifpack2Preconditioner.cpp.o.d -o CMakeFiles/dolfin.dir/la/Ifpack2Preconditioner.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/Ifpack2Preconditioner.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 57%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/GenericMatrix.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/la/GenericMatrix.cpp.o -MF CMakeFiles/dolfin.dir/la/GenericMatrix.cpp.o.d -o CMakeFiles/dolfin.dir/la/GenericMatrix.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/GenericMatrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 57%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/IndexMap.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/la/IndexMap.cpp.o -MF CMakeFiles/dolfin.dir/la/IndexMap.cpp.o.d -o CMakeFiles/dolfin.dir/la/IndexMap.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/IndexMap.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 59%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/LinearOperator.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/la/LinearOperator.cpp.o -MF CMakeFiles/dolfin.dir/la/LinearOperator.cpp.o.d -o CMakeFiles/dolfin.dir/la/LinearOperator.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/LinearOperator.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 57%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/KrylovSolver.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/la/KrylovSolver.cpp.o -MF CMakeFiles/dolfin.dir/la/KrylovSolver.cpp.o.d -o CMakeFiles/dolfin.dir/la/KrylovSolver.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/KrylovSolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 59%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/LinearSolver.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/la/LinearSolver.cpp.o -MF CMakeFiles/dolfin.dir/la/LinearSolver.cpp.o.d -o CMakeFiles/dolfin.dir/la/LinearSolver.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/LinearSolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 60%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/MueluPreconditioner.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/la/MueluPreconditioner.cpp.o -MF CMakeFiles/dolfin.dir/la/MueluPreconditioner.cpp.o.d -o CMakeFiles/dolfin.dir/la/MueluPreconditioner.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/MueluPreconditioner.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 59%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/LUSolver.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/la/LUSolver.cpp.o -MF CMakeFiles/dolfin.dir/la/LUSolver.cpp.o.d -o CMakeFiles/dolfin.dir/la/LUSolver.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/LUSolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 60%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/PETScBaseMatrix.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/la/PETScBaseMatrix.cpp.o -MF CMakeFiles/dolfin.dir/la/PETScBaseMatrix.cpp.o.d -o CMakeFiles/dolfin.dir/la/PETScBaseMatrix.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/PETScBaseMatrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 60%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/PETScFactory.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/la/PETScFactory.cpp.o -MF CMakeFiles/dolfin.dir/la/PETScFactory.cpp.o.d -o CMakeFiles/dolfin.dir/la/PETScFactory.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/PETScFactory.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 62%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/PETScLinearOperator.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/la/PETScLinearOperator.cpp.o -MF CMakeFiles/dolfin.dir/la/PETScLinearOperator.cpp.o.d -o CMakeFiles/dolfin.dir/la/PETScLinearOperator.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/PETScLinearOperator.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 62%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/PETScKrylovSolver.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/la/PETScKrylovSolver.cpp.o -MF CMakeFiles/dolfin.dir/la/PETScKrylovSolver.cpp.o.d -o CMakeFiles/dolfin.dir/la/PETScKrylovSolver.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/PETScKrylovSolver.cpp /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/PETScKrylovSolver.cpp: In member function 'void dolfin::PETScKrylovSolver::monitor(bool)': /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/PETScKrylovSolver.cpp:500:77: warning: 'PetscErrorCode KSPMonitorTrueResidualNorm(KSP, PetscInt, PetscReal, PetscViewerAndFormat*)' is deprecated [-Wdeprecated-declarations] 500 | (PetscErrorCode (*)(KSP,PetscInt,PetscReal,void*)) KSPMonitorTrueResidualNorm, | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/petsc/petscsnes.h:6, from /usr/include/petsc/petscts.h:7, from /usr/include/petsc/petsc.h:29, from /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/common/SubSystemsManager.h:24, from /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/PETScObject.h:24, from /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/PETScBaseMatrix.h:37, from /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/PETScMatrix.h:41, from /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/fem/PETScDMCollection.h:28, from /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/PETScKrylovSolver.cpp:29: /usr/include/petsc/petscksp.h:406:109: note: declared here 406 | PETSC_DEPRECATED_FUNCTION("Use KSPMonitorTrueResidual() (since version 3.15)") static inline PetscErrorCode KSPMonitorTrueResidualNorm(KSP ksp, PetscInt n, PetscReal rnorm, PetscViewerAndFormat *vf) {return KSPMonitorTrueResidual(ksp,n,rnorm,vf);} | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 62%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/PETScLUSolver.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/la/PETScLUSolver.cpp.o -MF CMakeFiles/dolfin.dir/la/PETScLUSolver.cpp.o.d -o CMakeFiles/dolfin.dir/la/PETScLUSolver.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/PETScLUSolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 64%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/PETScObject.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/la/PETScObject.cpp.o -MF CMakeFiles/dolfin.dir/la/PETScObject.cpp.o.d -o CMakeFiles/dolfin.dir/la/PETScObject.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/PETScObject.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 64%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/PETScOptions.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/la/PETScOptions.cpp.o -MF CMakeFiles/dolfin.dir/la/PETScOptions.cpp.o.d -o CMakeFiles/dolfin.dir/la/PETScOptions.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/PETScOptions.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 62%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/PETScMatrix.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/la/PETScMatrix.cpp.o -MF CMakeFiles/dolfin.dir/la/PETScMatrix.cpp.o.d -o CMakeFiles/dolfin.dir/la/PETScMatrix.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/PETScMatrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 64%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/PETScPreconditioner.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/la/PETScPreconditioner.cpp.o -MF CMakeFiles/dolfin.dir/la/PETScPreconditioner.cpp.o.d -o CMakeFiles/dolfin.dir/la/PETScPreconditioner.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/PETScPreconditioner.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 65%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/SLEPcEigenSolver.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/la/SLEPcEigenSolver.cpp.o -MF CMakeFiles/dolfin.dir/la/SLEPcEigenSolver.cpp.o.d -o CMakeFiles/dolfin.dir/la/SLEPcEigenSolver.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/SLEPcEigenSolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 65%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/PETScVector.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/la/PETScVector.cpp.o -MF CMakeFiles/dolfin.dir/la/PETScVector.cpp.o.d -o CMakeFiles/dolfin.dir/la/PETScVector.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/PETScVector.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 65%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/solve.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/la/solve.cpp.o -MF CMakeFiles/dolfin.dir/la/solve.cpp.o.d -o CMakeFiles/dolfin.dir/la/solve.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/solve.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 67%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/TensorLayout.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/la/TensorLayout.cpp.o -MF CMakeFiles/dolfin.dir/la/TensorLayout.cpp.o.d -o CMakeFiles/dolfin.dir/la/TensorLayout.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/TensorLayout.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 65%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/SparsityPattern.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/la/SparsityPattern.cpp.o -MF CMakeFiles/dolfin.dir/la/SparsityPattern.cpp.o.d -o CMakeFiles/dolfin.dir/la/SparsityPattern.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/SparsityPattern.cpp /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/SparsityPattern.cpp: In member function 'void dolfin::SparsityPattern::insert_full_rows_local(const std::vector&)': /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/SparsityPattern.cpp:261:21: warning: unused variable 'ghosted_size0' [-Wunused-variable] 261 | const std::size_t ghosted_size0 = | ^~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/SparsityPattern.cpp: In member function 'void dolfin::SparsityPattern::apply()': /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/SparsityPattern.cpp:384:21: warning: unused variable 'proc_number' [-Wunused-variable] 384 | const std::size_t proc_number = _mpi_comm.rank(); | ^~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 67%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/TpetraFactory.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/la/TpetraFactory.cpp.o -MF CMakeFiles/dolfin.dir/la/TpetraFactory.cpp.o.d -o CMakeFiles/dolfin.dir/la/TpetraFactory.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/TpetraFactory.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 68%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/TpetraMatrix.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/la/TpetraMatrix.cpp.o -MF CMakeFiles/dolfin.dir/la/TpetraMatrix.cpp.o.d -o CMakeFiles/dolfin.dir/la/TpetraMatrix.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/TpetraMatrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 68%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/TpetraVector.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/la/TpetraVector.cpp.o -MF CMakeFiles/dolfin.dir/la/TpetraVector.cpp.o.d -o CMakeFiles/dolfin.dir/la/TpetraVector.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/TpetraVector.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 68%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/TrilinosParameters.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/la/TrilinosParameters.cpp.o -MF CMakeFiles/dolfin.dir/la/TrilinosParameters.cpp.o.d -o CMakeFiles/dolfin.dir/la/TrilinosParameters.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/TrilinosParameters.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 67%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/test_nullspace.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/la/test_nullspace.cpp.o -MF CMakeFiles/dolfin.dir/la/test_nullspace.cpp.o.d -o CMakeFiles/dolfin.dir/la/test_nullspace.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/test_nullspace.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 68%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/VectorSpaceBasis.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/la/VectorSpaceBasis.cpp.o -MF CMakeFiles/dolfin.dir/la/VectorSpaceBasis.cpp.o.d -o CMakeFiles/dolfin.dir/la/VectorSpaceBasis.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/VectorSpaceBasis.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 70%] Building CXX object dolfin/CMakeFiles/dolfin.dir/log/Event.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/log/Event.cpp.o -MF CMakeFiles/dolfin.dir/log/Event.cpp.o.d -o CMakeFiles/dolfin.dir/log/Event.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/log/Event.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 70%] Building CXX object dolfin/CMakeFiles/dolfin.dir/log/log.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/log/log.cpp.o -MF CMakeFiles/dolfin.dir/log/log.cpp.o.d -o CMakeFiles/dolfin.dir/log/log.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/log/log.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 71%] Building CXX object dolfin/CMakeFiles/dolfin.dir/log/LogManager.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/log/LogManager.cpp.o -MF CMakeFiles/dolfin.dir/log/LogManager.cpp.o.d -o CMakeFiles/dolfin.dir/log/LogManager.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/log/LogManager.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 70%] Building CXX object dolfin/CMakeFiles/dolfin.dir/log/Logger.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/log/Logger.cpp.o -MF CMakeFiles/dolfin.dir/log/Logger.cpp.o.d -o CMakeFiles/dolfin.dir/log/Logger.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/log/Logger.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 71%] Building CXX object dolfin/CMakeFiles/dolfin.dir/log/LogStream.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/log/LogStream.cpp.o -MF CMakeFiles/dolfin.dir/log/LogStream.cpp.o.d -o CMakeFiles/dolfin.dir/log/LogStream.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/log/LogStream.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 71%] Building CXX object dolfin/CMakeFiles/dolfin.dir/log/Progress.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/log/Progress.cpp.o -MF CMakeFiles/dolfin.dir/log/Progress.cpp.o.d -o CMakeFiles/dolfin.dir/log/Progress.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/log/Progress.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 73%] Building CXX object dolfin/CMakeFiles/dolfin.dir/math/basic.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/math/basic.cpp.o -MF CMakeFiles/dolfin.dir/math/basic.cpp.o.d -o CMakeFiles/dolfin.dir/math/basic.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/math/basic.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 73%] Building CXX object dolfin/CMakeFiles/dolfin.dir/math/Lagrange.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/math/Lagrange.cpp.o -MF CMakeFiles/dolfin.dir/math/Lagrange.cpp.o.d -o CMakeFiles/dolfin.dir/math/Lagrange.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/math/Lagrange.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 71%] Building CXX object dolfin/CMakeFiles/dolfin.dir/log/Table.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/log/Table.cpp.o -MF CMakeFiles/dolfin.dir/log/Table.cpp.o.d -o CMakeFiles/dolfin.dir/log/Table.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/log/Table.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 73%] Building CXX object dolfin/CMakeFiles/dolfin.dir/math/Legendre.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/math/Legendre.cpp.o -MF CMakeFiles/dolfin.dir/math/Legendre.cpp.o.d -o CMakeFiles/dolfin.dir/math/Legendre.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/math/Legendre.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 75%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/BoundaryMesh.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/BoundaryMesh.cpp.o -MF CMakeFiles/dolfin.dir/mesh/BoundaryMesh.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/BoundaryMesh.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/BoundaryMesh.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 75%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/BoundaryComputation.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/BoundaryComputation.cpp.o -MF CMakeFiles/dolfin.dir/mesh/BoundaryComputation.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/BoundaryComputation.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/BoundaryComputation.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 75%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/Cell.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/Cell.cpp.o -MF CMakeFiles/dolfin.dir/mesh/Cell.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/Cell.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/Cell.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 76%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/CellType.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/CellType.cpp.o -MF CMakeFiles/dolfin.dir/mesh/CellType.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/CellType.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/CellType.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 76%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/DynamicMeshEditor.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/DynamicMeshEditor.cpp.o -MF CMakeFiles/dolfin.dir/mesh/DynamicMeshEditor.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/DynamicMeshEditor.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/DynamicMeshEditor.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 76%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/Edge.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/Edge.cpp.o -MF CMakeFiles/dolfin.dir/mesh/Edge.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/Edge.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/Edge.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 78%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/Face.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/Face.cpp.o -MF CMakeFiles/dolfin.dir/mesh/Face.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/Face.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/Face.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 76%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/DistributedMeshTools.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/DistributedMeshTools.cpp.o -MF CMakeFiles/dolfin.dir/mesh/DistributedMeshTools.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/DistributedMeshTools.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/DistributedMeshTools.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 78%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/FacetCell.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/FacetCell.cpp.o -MF CMakeFiles/dolfin.dir/mesh/FacetCell.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/FacetCell.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/FacetCell.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 78%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/Facet.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/Facet.cpp.o -MF CMakeFiles/dolfin.dir/mesh/Facet.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/Facet.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/Facet.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 79%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/HexahedronCell.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/HexahedronCell.cpp.o -MF CMakeFiles/dolfin.dir/mesh/HexahedronCell.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/HexahedronCell.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/HexahedronCell.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 79%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/IntervalCell.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/IntervalCell.cpp.o -MF CMakeFiles/dolfin.dir/mesh/IntervalCell.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/IntervalCell.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/IntervalCell.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 79%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshColoring.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/MeshColoring.cpp.o -MF CMakeFiles/dolfin.dir/mesh/MeshColoring.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/MeshColoring.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MeshColoring.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 79%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/LocalMeshData.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/LocalMeshData.cpp.o -MF CMakeFiles/dolfin.dir/mesh/LocalMeshData.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/LocalMeshData.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/LocalMeshData.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 81%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshConnectivity.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/MeshConnectivity.cpp.o -MF CMakeFiles/dolfin.dir/mesh/MeshConnectivity.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/MeshConnectivity.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MeshConnectivity.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 81%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshData.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/MeshData.cpp.o -MF CMakeFiles/dolfin.dir/mesh/MeshData.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/MeshData.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MeshData.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 82%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshDomains.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/MeshDomains.cpp.o -MF CMakeFiles/dolfin.dir/mesh/MeshDomains.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/MeshDomains.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MeshDomains.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 81%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/Mesh.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/Mesh.cpp.o -MF CMakeFiles/dolfin.dir/mesh/Mesh.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/Mesh.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/Mesh.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 82%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshEditor.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/MeshEditor.cpp.o -MF CMakeFiles/dolfin.dir/mesh/MeshEditor.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/MeshEditor.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MeshEditor.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 82%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshEntity.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/MeshEntity.cpp.o -MF CMakeFiles/dolfin.dir/mesh/MeshEntity.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/MeshEntity.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MeshEntity.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 84%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshGeometry.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/MeshGeometry.cpp.o -MF CMakeFiles/dolfin.dir/mesh/MeshGeometry.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/MeshGeometry.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MeshGeometry.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 82%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshFunction.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/MeshFunction.cpp.o -MF CMakeFiles/dolfin.dir/mesh/MeshFunction.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/MeshFunction.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MeshFunction.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 84%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshOrdering.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/MeshOrdering.cpp.o -MF CMakeFiles/dolfin.dir/mesh/MeshOrdering.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/MeshOrdering.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MeshOrdering.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 84%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshHierarchy.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/MeshHierarchy.cpp.o -MF CMakeFiles/dolfin.dir/mesh/MeshHierarchy.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/MeshHierarchy.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MeshHierarchy.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 85%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshQuality.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/MeshQuality.cpp.o -MF CMakeFiles/dolfin.dir/mesh/MeshQuality.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/MeshQuality.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MeshQuality.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 85%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshRenumbering.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/MeshRenumbering.cpp.o -MF CMakeFiles/dolfin.dir/mesh/MeshRenumbering.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/MeshRenumbering.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MeshRenumbering.cpp /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MeshRenumbering.cpp: In static member function 'static dolfin::Mesh dolfin::MeshRenumbering::renumber_by_color(const dolfin::Mesh&, std::vector)': /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MeshRenumbering.cpp:149:42: warning: variable 'insert' set but not used [-Wunused-but-set-variable] 149 | std::pair insert | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MeshRenumbering.cpp: In static member function 'static void dolfin::MeshRenumbering::compute_renumbering(const dolfin::Mesh&, const std::vector&, std::vector&, std::vector&)': /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MeshRenumbering.cpp:167:21: warning: unused variable 'num_cells' [-Wunused-variable] 167 | const std::size_t num_cells = mesh.num_cells(); | ^~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MeshRenumbering.cpp:204:35: warning: unused variable 'colors_old' [-Wunused-variable] 204 | const std::vector& colors_old = mesh_coloring->second.first; | ^~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 85%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshPartitioning.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/MeshPartitioning.cpp.o -MF CMakeFiles/dolfin.dir/mesh/MeshPartitioning.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/MeshPartitioning.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MeshPartitioning.cpp /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MeshPartitioning.cpp: In static member function 'static int32_t dolfin::MeshPartitioning::distribute_cells(MPI_Comm, const dolfin::LocalMeshData&, const std::vector&, const std::map >&, boost::multi_array&, std::vector&, std::vector&, std::map >&)': /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MeshPartitioning.cpp:727:21: warning: unused variable 'num_local_cells' [-Wunused-variable] 727 | const std::size_t num_local_cells = mesh_data.topology.cell_vertices.size(); | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 85%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshSmoothing.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/MeshSmoothing.cpp.o -MF CMakeFiles/dolfin.dir/mesh/MeshSmoothing.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/MeshSmoothing.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MeshSmoothing.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 87%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshTopology.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/MeshTopology.cpp.o -MF CMakeFiles/dolfin.dir/mesh/MeshTopology.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/MeshTopology.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MeshTopology.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 87%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshTransformation.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/MeshTransformation.cpp.o -MF CMakeFiles/dolfin.dir/mesh/MeshTransformation.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/MeshTransformation.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MeshTransformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 89%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/PeriodicBoundaryComputation.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/PeriodicBoundaryComputation.cpp.o -MF CMakeFiles/dolfin.dir/mesh/PeriodicBoundaryComputation.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/PeriodicBoundaryComputation.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/PeriodicBoundaryComputation.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 89%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/PointCell.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/PointCell.cpp.o -MF CMakeFiles/dolfin.dir/mesh/PointCell.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/PointCell.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/PointCell.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 87%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MultiMesh.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/MultiMesh.cpp.o -MF CMakeFiles/dolfin.dir/mesh/MultiMesh.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/MultiMesh.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MultiMesh.cpp /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MultiMesh.cpp: In member function 'void dolfin::MultiMesh::_build_quadrature_rules_overlap(std::size_t)': /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MultiMesh.cpp:778:55: warning: loop variable 'cutting' creates a copy from type 'const std::pair' [-Wrange-loop-construct] 778 | for (const std::pair cutting : cutting_cells) | ^~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MultiMesh.cpp:778:55: note: use reference type to prevent copying 778 | for (const std::pair cutting : cutting_cells) | ^~~~~~~ | & /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MultiMesh.cpp: In member function 'void dolfin::MultiMesh::_build_quadrature_rules_interface(std::size_t)': /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MultiMesh.cpp:931:21: warning: loop variable 'cut_i' creates a copy from type 'const std::pair > >' [-Wrange-loop-construct] 931 | for (const auto cut_i: cmap) | ^~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MultiMesh.cpp:931:21: note: use reference type to prevent copying 931 | for (const auto cut_i: cmap) | ^~~~~ | & /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MultiMesh.cpp:995:25: warning: loop variable 'boundary_cell_index_j' creates a copy from type 'const std::pair' [-Wrange-loop-construct] 995 | for (const auto boundary_cell_index_j: full_to_bdry[cutting_part_j][cutting_cell_index_j]) | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MultiMesh.cpp:995:25: note: use reference type to prevent copying 995 | for (const auto boundary_cell_index_j: full_to_bdry[cutting_part_j][cutting_cell_index_j]) | ^~~~~~~~~~~~~~~~~~~~~ | & make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 89%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/QuadrilateralCell.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/QuadrilateralCell.cpp.o -MF CMakeFiles/dolfin.dir/mesh/QuadrilateralCell.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/QuadrilateralCell.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/QuadrilateralCell.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 89%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/SubDomain.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/SubDomain.cpp.o -MF CMakeFiles/dolfin.dir/mesh/SubDomain.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/SubDomain.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/SubDomain.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 90%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/SubMesh.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/SubMesh.cpp.o -MF CMakeFiles/dolfin.dir/mesh/SubMesh.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/SubMesh.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/SubMesh.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 90%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/TetrahedronCell.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/TetrahedronCell.cpp.o -MF CMakeFiles/dolfin.dir/mesh/TetrahedronCell.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/TetrahedronCell.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/TetrahedronCell.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 92%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/TriangleCell.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/TriangleCell.cpp.o -MF CMakeFiles/dolfin.dir/mesh/TriangleCell.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/TriangleCell.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/TriangleCell.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 90%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/TopologyComputation.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/TopologyComputation.cpp.o -MF CMakeFiles/dolfin.dir/mesh/TopologyComputation.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/TopologyComputation.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/TopologyComputation.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 92%] Building CXX object dolfin/CMakeFiles/dolfin.dir/multistage/MultiStageScheme.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/multistage/MultiStageScheme.cpp.o -MF CMakeFiles/dolfin.dir/multistage/MultiStageScheme.cpp.o.d -o CMakeFiles/dolfin.dir/multistage/MultiStageScheme.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/multistage/MultiStageScheme.cpp /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/multistage/MultiStageScheme.cpp: In member function 'void dolfin::MultiStageScheme::_check_arguments()': /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/multistage/MultiStageScheme.cpp:228:23: warning: loop variable 'bc' creates a copy from type 'const std::shared_ptr' [-Wrange-loop-construct] 228 | for (const auto bc: _bcs) | ^~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/multistage/MultiStageScheme.cpp:228:23: note: use reference type to prevent copying 228 | for (const auto bc: _bcs) | ^~ | & /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/multistage/MultiStageScheme.cpp:260:23: warning: loop variable 'bc' creates a copy from type 'const std::shared_ptr' [-Wrange-loop-construct] 260 | for (const auto bc: _bcs) | ^~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/multistage/MultiStageScheme.cpp:260:23: note: use reference type to prevent copying 260 | for (const auto bc: _bcs) | ^~ | & make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 93%] Building CXX object dolfin/CMakeFiles/dolfin.dir/multistage/RKSolver.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/multistage/RKSolver.cpp.o -MF CMakeFiles/dolfin.dir/multistage/RKSolver.cpp.o.d -o CMakeFiles/dolfin.dir/multistage/RKSolver.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/multistage/RKSolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 92%] Building CXX object dolfin/CMakeFiles/dolfin.dir/multistage/PointIntegralSolver.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/multistage/PointIntegralSolver.cpp.o -MF CMakeFiles/dolfin.dir/multistage/PointIntegralSolver.cpp.o.d -o CMakeFiles/dolfin.dir/multistage/PointIntegralSolver.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/multistage/PointIntegralSolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 93%] Building CXX object dolfin/CMakeFiles/dolfin.dir/nls/NewtonSolver.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/nls/NewtonSolver.cpp.o -MF CMakeFiles/dolfin.dir/nls/NewtonSolver.cpp.o.d -o CMakeFiles/dolfin.dir/nls/NewtonSolver.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/nls/NewtonSolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 93%] Building CXX object dolfin/CMakeFiles/dolfin.dir/nls/PETScSNESSolver.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/nls/PETScSNESSolver.cpp.o -MF CMakeFiles/dolfin.dir/nls/PETScSNESSolver.cpp.o.d -o CMakeFiles/dolfin.dir/nls/PETScSNESSolver.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/nls/PETScSNESSolver.cpp /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/nls/PETScSNESSolver.cpp: In member function 'void dolfin::PETScSNESSolver::set_linear_solver_parameters()': /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/nls/PETScSNESSolver.cpp:520:79: warning: 'PetscErrorCode KSPMonitorTrueResidualNorm(KSP, PetscInt, PetscReal, PetscViewerAndFormat*)' is deprecated [-Wdeprecated-declarations] 520 | (PetscErrorCode (*)(KSP,PetscInt,PetscReal,void*)) KSPMonitorTrueResidualNorm, | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/PETScKrylovSolver.h:31, from /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/nls/PETScSNESSolver.cpp:35: /usr/include/petsc/petscksp.h:406:109: note: declared here 406 | PETSC_DEPRECATED_FUNCTION("Use KSPMonitorTrueResidual() (since version 3.15)") static inline PetscErrorCode KSPMonitorTrueResidualNorm(KSP ksp, PetscInt n, PetscReal rnorm, PetscViewerAndFormat *vf) {return KSPMonitorTrueResidual(ksp,n,rnorm,vf);} | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 93%] Building CXX object dolfin/CMakeFiles/dolfin.dir/nls/PETScTAOSolver.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/nls/PETScTAOSolver.cpp.o -MF CMakeFiles/dolfin.dir/nls/PETScTAOSolver.cpp.o.d -o CMakeFiles/dolfin.dir/nls/PETScTAOSolver.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/nls/PETScTAOSolver.cpp /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/nls/PETScTAOSolver.cpp: In constructor 'dolfin::PETScTAOSolver::PETScTAOSolver(MPI_Comm, std::string, std::string, std::string)': /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/nls/PETScTAOSolver.cpp:99:30: warning: 'PetscErrorCode TaoSetHessianRoutine(Tao, Mat, Mat, PetscErrorCode (*)(Tao, Vec, Mat, Mat, void*), void*)' is deprecated [-Wdeprecated-declarations] 99 | ierr = TaoSetHessianRoutine(_tao, _matH.mat(), _matP.mat(), nullptr, nullptr); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/petsc/petsc.h:30, from /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/common/SubSystemsManager.h:24, from /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/PETScObject.h:24, from /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/PETScKrylovSolver.h:34, from /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/nls/PETScTAOSolver.cpp:31: /usr/include/petsc/petsctao.h:241:100: note: declared here 241 | PETSC_DEPRECATED_FUNCTION("Use TaoSetHessian() (since version 3.17)") static inline PetscErrorCode TaoSetHessianRoutine(Tao t,Mat H,Mat P,PetscErrorCode (*f)(Tao,Vec,Mat,Mat,void*),void *c) { return TaoSetHessian(t,H,P,f,c); } | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/nls/PETScTAOSolver.cpp: In member function 'void dolfin::PETScTAOSolver::init(dolfin::OptimisationProblem&, dolfin::PETScVector&, const dolfin::PETScVector&, const dolfin::PETScVector&)': /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/nls/PETScTAOSolver.cpp:226:29: warning: 'PetscErrorCode TaoSetInitialVector(Tao, Vec)' is deprecated [-Wdeprecated-declarations] 226 | ierr = TaoSetInitialVector(_tao, x.vec()); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /usr/include/petsc/petsctao.h:226:101: note: declared here 226 | PETSC_DEPRECATED_FUNCTION("Use TaoSetSolution() (since version 3.17)") static inline PetscErrorCode TaoSetInitialVector(Tao t,Vec v) { return TaoSetSolution(t,v); } | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/nls/PETScTAOSolver.cpp:237:43: warning: 'PetscErrorCode TaoSetObjectiveAndGradientRoutine(Tao, PetscErrorCode (*)(Tao, Vec, PetscReal*, Vec, void*), void*)' is deprecated [-Wdeprecated-declarations] 237 | ierr = TaoSetObjectiveAndGradientRoutine(_tao, FormFunctionGradient, &_tao_ctx); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/petsc/petsctao.h:240:113: note: declared here 240 | PETSC_DEPRECATED_FUNCTION("Use TaoSetObjectiveAndGradient() (since version 3.17)") static inline PetscErrorCode TaoSetObjectiveAndGradientRoutine(Tao t,PetscErrorCode (*f)(Tao,Vec,PetscReal*,Vec,void*),void *c) { return TaoSetObjectiveAndGradient(t,NULL,f,c); } | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/nls/PETScTAOSolver.cpp:239:30: warning: 'PetscErrorCode TaoSetHessianRoutine(Tao, Mat, Mat, PetscErrorCode (*)(Tao, Vec, Mat, Mat, void*), void*)' is deprecated [-Wdeprecated-declarations] 239 | ierr = TaoSetHessianRoutine(_tao, nullptr, nullptr, FormHessian, &_tao_ctx); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/petsc/petsctao.h:241:100: note: declared here 241 | PETSC_DEPRECATED_FUNCTION("Use TaoSetHessian() (since version 3.17)") static inline PetscErrorCode TaoSetHessianRoutine(Tao t,Mat H,Mat P,PetscErrorCode (*f)(Tao,Vec,Mat,Mat,void*),void *c) { return TaoSetHessian(t,H,P,f,c); } | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/nls/PETScTAOSolver.cpp: In static member function 'static PetscErrorCode dolfin::PETScTAOSolver::FormHessian(Tao, Vec, Mat, Mat, void*)': /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/nls/PETScTAOSolver.cpp:391:47: warning: 'PetscErrorCode TaoSetHessianRoutine(Tao, Mat, Mat, PetscErrorCode (*)(Tao, Vec, Mat, Mat, void*), void*)' is deprecated [-Wdeprecated-declarations] 391 | PetscErrorCode ierr = TaoSetHessianRoutine(tao, nullptr, H, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 392 | nullptr, nullptr); | ~~~~~~~~~~~~~~~~~ /usr/include/petsc/petsctao.h:241:100: note: declared here 241 | PETSC_DEPRECATED_FUNCTION("Use TaoSetHessian() (since version 3.17)") static inline PetscErrorCode TaoSetHessianRoutine(Tao t,Mat H,Mat P,PetscErrorCode (*f)(Tao,Vec,Mat,Mat,void*),void *c) { return TaoSetHessian(t,H,P,f,c); } | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/nls/PETScTAOSolver.cpp: In member function 'void dolfin::PETScTAOSolver::set_ksp_options()': /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/nls/PETScTAOSolver.cpp:580:77: warning: 'PetscErrorCode KSPMonitorTrueResidualNorm(KSP, PetscInt, PetscReal, PetscViewerAndFormat*)' is deprecated [-Wdeprecated-declarations] 580 | (PetscErrorCode (*)(KSP,PetscInt,PetscReal,void*)) KSPMonitorTrueResidualNorm, | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/PETScKrylovSolver.h:31: /usr/include/petsc/petscksp.h:406:109: note: declared here 406 | PETSC_DEPRECATED_FUNCTION("Use KSPMonitorTrueResidual() (since version 3.15)") static inline PetscErrorCode KSPMonitorTrueResidualNorm(KSP ksp, PetscInt n, PetscReal rnorm, PetscViewerAndFormat *vf) {return KSPMonitorTrueResidual(ksp,n,rnorm,vf);} | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 95%] Building CXX object dolfin/CMakeFiles/dolfin.dir/nls/TAOLinearBoundSolver.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/nls/TAOLinearBoundSolver.cpp.o -MF CMakeFiles/dolfin.dir/nls/TAOLinearBoundSolver.cpp.o.d -o CMakeFiles/dolfin.dir/nls/TAOLinearBoundSolver.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/nls/TAOLinearBoundSolver.cpp /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/nls/TAOLinearBoundSolver.cpp: In member function 'std::size_t dolfin::TAOLinearBoundSolver::solve(const dolfin::PETScMatrix&, dolfin::PETScVector&, const dolfin::PETScVector&, const dolfin::PETScVector&, const dolfin::PETScVector&)': /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/nls/TAOLinearBoundSolver.cpp:175:29: warning: 'PetscErrorCode TaoSetInitialVector(Tao, Vec)' is deprecated [-Wdeprecated-declarations] 175 | ierr = TaoSetInitialVector(_tao, x.vec()); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ In file included from /usr/include/petsc/petsc.h:30, from /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/common/SubSystemsManager.h:24, from /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/PETScObject.h:24, from /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/PETScBaseMatrix.h:37, from /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/la/PETScMatrix.h:41, from /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/nls/TAOLinearBoundSolver.cpp:29: /usr/include/petsc/petsctao.h:226:101: note: declared here 226 | PETSC_DEPRECATED_FUNCTION("Use TaoSetSolution() (since version 3.17)") static inline PetscErrorCode TaoSetInitialVector(Tao t,Vec v) { return TaoSetSolution(t,v); } | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/nls/TAOLinearBoundSolver.cpp:184:43: warning: 'PetscErrorCode TaoSetObjectiveAndGradientRoutine(Tao, PetscErrorCode (*)(Tao, Vec, PetscReal*, Vec, void*), void*)' is deprecated [-Wdeprecated-declarations] 184 | ierr = TaoSetObjectiveAndGradientRoutine(_tao, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ 185 | __TAOFormFunctionGradientQuadraticProblem, this); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/petsc/petsctao.h:240:113: note: declared here 240 | PETSC_DEPRECATED_FUNCTION("Use TaoSetObjectiveAndGradient() (since version 3.17)") static inline PetscErrorCode TaoSetObjectiveAndGradientRoutine(Tao t,PetscErrorCode (*f)(Tao,Vec,PetscReal*,Vec,void*),void *c) { return TaoSetObjectiveAndGradient(t,NULL,f,c); } | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/nls/TAOLinearBoundSolver.cpp:188:30: warning: 'PetscErrorCode TaoSetHessianRoutine(Tao, Mat, Mat, PetscErrorCode (*)(Tao, Vec, Mat, Mat, void*), void*)' is deprecated [-Wdeprecated-declarations] 188 | ierr = TaoSetHessianRoutine(_tao, A->mat(), A->mat(), | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ 189 | __TAOFormHessianQuadraticProblem, this); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/petsc/petsctao.h:241:100: note: declared here 241 | PETSC_DEPRECATED_FUNCTION("Use TaoSetHessian() (since version 3.17)") static inline PetscErrorCode TaoSetHessianRoutine(Tao t,Mat H,Mat P,PetscErrorCode (*f)(Tao,Vec,Mat,Mat,void*),void *c) { return TaoSetHessian(t,H,P,f,c); } | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/nls/TAOLinearBoundSolver.cpp: In member function 'void dolfin::TAOLinearBoundSolver::set_ksp_options()': /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/nls/TAOLinearBoundSolver.cpp:416:86: warning: 'PetscErrorCode KSPMonitorTrueResidualNorm(KSP, PetscInt, PetscReal, PetscViewerAndFormat*)' is deprecated [-Wdeprecated-declarations] 416 | ierr = KSPMonitorSet(ksp, (PetscErrorCode (*)(KSP,PetscInt,PetscReal,void*)) KSPMonitorTrueResidualNorm, | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/petsc/petscsnes.h:6, from /usr/include/petsc/petscts.h:7, from /usr/include/petsc/petsc.h:29: /usr/include/petsc/petscksp.h:406:109: note: declared here 406 | PETSC_DEPRECATED_FUNCTION("Use KSPMonitorTrueResidual() (since version 3.15)") static inline PetscErrorCode KSPMonitorTrueResidualNorm(KSP ksp, PetscInt n, PetscReal rnorm, PetscViewerAndFormat *vf) {return KSPMonitorTrueResidual(ksp,n,rnorm,vf);} | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 95%] Building CXX object dolfin/CMakeFiles/dolfin.dir/parameter/GlobalParameters.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/parameter/GlobalParameters.cpp.o -MF CMakeFiles/dolfin.dir/parameter/GlobalParameters.cpp.o.d -o CMakeFiles/dolfin.dir/parameter/GlobalParameters.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/parameter/GlobalParameters.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 95%] Building CXX object dolfin/CMakeFiles/dolfin.dir/parameter/Parameter.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/parameter/Parameter.cpp.o -MF CMakeFiles/dolfin.dir/parameter/Parameter.cpp.o.d -o CMakeFiles/dolfin.dir/parameter/Parameter.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/parameter/Parameter.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 96%] Building CXX object dolfin/CMakeFiles/dolfin.dir/refinement/BisectionRefinement1D.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/refinement/BisectionRefinement1D.cpp.o -MF CMakeFiles/dolfin.dir/refinement/BisectionRefinement1D.cpp.o.d -o CMakeFiles/dolfin.dir/refinement/BisectionRefinement1D.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/refinement/BisectionRefinement1D.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 96%] Building CXX object dolfin/CMakeFiles/dolfin.dir/parameter/Parameters.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/parameter/Parameters.cpp.o -MF CMakeFiles/dolfin.dir/parameter/Parameters.cpp.o.d -o CMakeFiles/dolfin.dir/parameter/Parameters.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/parameter/Parameters.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 96%] Building CXX object dolfin/CMakeFiles/dolfin.dir/refinement/LocalMeshCoarsening.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/refinement/LocalMeshCoarsening.cpp.o -MF CMakeFiles/dolfin.dir/refinement/LocalMeshCoarsening.cpp.o.d -o CMakeFiles/dolfin.dir/refinement/LocalMeshCoarsening.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/refinement/LocalMeshCoarsening.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 96%] Building CXX object dolfin/CMakeFiles/dolfin.dir/refinement/ParallelRefinement.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/refinement/ParallelRefinement.cpp.o -MF CMakeFiles/dolfin.dir/refinement/ParallelRefinement.cpp.o.d -o CMakeFiles/dolfin.dir/refinement/ParallelRefinement.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/refinement/ParallelRefinement.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 98%] Building CXX object dolfin/CMakeFiles/dolfin.dir/refinement/PlazaRefinementND.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/refinement/PlazaRefinementND.cpp.o -MF CMakeFiles/dolfin.dir/refinement/PlazaRefinementND.cpp.o.d -o CMakeFiles/dolfin.dir/refinement/PlazaRefinementND.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/refinement/PlazaRefinementND.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 98%] Building CXX object dolfin/CMakeFiles/dolfin.dir/refinement/refine.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/refinement/refine.cpp.o -MF CMakeFiles/dolfin.dir/refinement/refine.cpp.o.d -o CMakeFiles/dolfin.dir/refinement/refine.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/refinement/refine.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [100%] Building CXX object dolfin/CMakeFiles/dolfin.dir/ts/CVode.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/ts/CVode.cpp.o -MF CMakeFiles/dolfin.dir/ts/CVode.cpp.o.d -o CMakeFiles/dolfin.dir/ts/CVode.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/ts/CVode.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 98%] Building CXX object dolfin/CMakeFiles/dolfin.dir/refinement/RegularCutRefinement.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -fPIC -std=c++11 -MD -MT dolfin/CMakeFiles/dolfin.dir/refinement/RegularCutRefinement.cpp.o -MF CMakeFiles/dolfin.dir/refinement/RegularCutRefinement.cpp.o.d -o CMakeFiles/dolfin.dir/refinement/RegularCutRefinement.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/refinement/RegularCutRefinement.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/refinement/RegularCutRefinement.cpp: In static member function 'static void dolfin::RegularCutRefinement::refine_marked(dolfin::Mesh&, const dolfin::Mesh&, const std::vector&, const dolfin::IndexSet&)': /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/refinement/RegularCutRefinement.cpp:323:19: warning: unused variable 'twin_marker' [-Wunused-variable] 323 | const int twin_marker = refinement_markers[bisection_twin]; | ^~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [100%] Linking CXX shared library libdolfin.so cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/cmake -E cmake_link_script CMakeFiles/dolfin.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 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CMakeFiles/dolfin.dir/multistage/PointIntegralSolver.cpp.o CMakeFiles/dolfin.dir/multistage/RKSolver.cpp.o CMakeFiles/dolfin.dir/nls/NewtonSolver.cpp.o CMakeFiles/dolfin.dir/nls/PETScSNESSolver.cpp.o CMakeFiles/dolfin.dir/nls/PETScTAOSolver.cpp.o CMakeFiles/dolfin.dir/nls/TAOLinearBoundSolver.cpp.o CMakeFiles/dolfin.dir/parameter/GlobalParameters.cpp.o CMakeFiles/dolfin.dir/parameter/Parameter.cpp.o CMakeFiles/dolfin.dir/parameter/Parameters.cpp.o CMakeFiles/dolfin.dir/refinement/BisectionRefinement1D.cpp.o CMakeFiles/dolfin.dir/refinement/LocalMeshCoarsening.cpp.o CMakeFiles/dolfin.dir/refinement/ParallelRefinement.cpp.o CMakeFiles/dolfin.dir/refinement/PlazaRefinementND.cpp.o CMakeFiles/dolfin.dir/refinement/refine.cpp.o CMakeFiles/dolfin.dir/refinement/RegularCutRefinement.cpp.o CMakeFiles/dolfin.dir/ts/CVode.cpp.o /usr/lib64/libboost_timer.so /usr/lib64/libboost_filesystem.so /usr/lib64/libboost_program_options.so /usr/lib64/libboost_iostreams.so /lib64/libhdf5.so /lib64/libz.so /usr/lib64/libboost_chrono.so /usr/lib64/libboost_regex.so /usr/lib64/libpetsc.so cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/cmake -E cmake_symlink_library libdolfin.so.2019.1.0 libdolfin.so.2019.1 libdolfin.so make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[1]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [100%] Built target dolfin make[1]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/dolfin-2019.1.0.post0/build/CMakeFiles 0 + /usr/bin/make install DESTDIR=/builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64 'INSTALL=/usr/bin/install -p' /usr/bin/cmake -S/builddir/build/BUILD/dolfin-2019.1.0.post0 -B/builddir/build/BUILD/dolfin-2019.1.0.post0/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/dolfin-2019.1.0.post0/build/CMakeFiles 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directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' /usr/bin/make -f dolfin/CMakeFiles/dolfin.dir/build.make dolfin/CMakeFiles/dolfin.dir/build make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Nothing to be done for 'dolfin/CMakeFiles/dolfin.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [100%] Built target dolfin make[1]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/dolfin-2019.1.0.post0/build/CMakeFiles 0 /usr/bin/make -f CMakeFiles/Makefile2 preinstall make[1]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[1]: Nothing to be done for 'preinstall'. make[1]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "RelWithDebInfo" -- Installing: 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/builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/include/dolfin/mesh/SubsetIterator.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/include/dolfin/mesh/TetrahedronCell.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/include/dolfin/mesh/TopologyComputation.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/include/dolfin/mesh/TriangleCell.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/include/dolfin/mesh/Vertex.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/include/dolfin/multistage/dolfin_multistage.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/include/dolfin/multistage/MultiStageScheme.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/include/dolfin/multistage/PointIntegralSolver.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/include/dolfin/multistage/RKSolver.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/include/dolfin/nls/dolfin_nls.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/include/dolfin/nls/NewtonSolver.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/include/dolfin/nls/NonlinearProblem.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/include/dolfin/nls/OptimisationProblem.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/include/dolfin/nls/PETScSNESSolver.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/include/dolfin/nls/PETScTAOSolver.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/include/dolfin/nls/TAOLinearBoundSolver.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/include/dolfin/parameter/dolfin_parameter.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/include/dolfin/parameter/GlobalParameters.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/include/dolfin/parameter/Parameter.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/include/dolfin/parameter/Parameters.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/include/dolfin/refinement/BisectionRefinement1D.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/include/dolfin/refinement/dolfin_refinement.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/include/dolfin/refinement/LocalMeshCoarsening.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/include/dolfin/refinement/ParallelRefinement.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/include/dolfin/refinement/PlazaRefinementND.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/include/dolfin/refinement/refine.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/include/dolfin/refinement/RegularCutRefinement.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/include/dolfin/ts/dolfin_ts.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/include/dolfin/ts/CVode.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/libdolfin.so.2019.1.0 -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/libdolfin.so.2019.1 -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/libdolfin.so -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/share/dolfin/cmake/DOLFINTargets.cmake -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/share/dolfin/cmake/DOLFINTargets-relwithdebinfo.cmake -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/share/dolfin/cmake/FindPETSc.cmake -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/share/dolfin/cmake/FindSLEPc.cmake -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/share/dolfin/cmake/DOLFINConfig.cmake -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/share/dolfin/cmake/DOLFINConfigVersion.cmake -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/share/dolfin/cmake/UseDOLFIN.cmake -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/pkgconfig/dolfin.pc ---------------------------------------------------------------------------- DOLFIN has now been installed in /usr and the demo programs have been installed in /usr/share/dolfin/demo Before rushing off to try the demos, don't forget to update your environment variables. This can be done easily using the helper file 'dolfin.conf' which sets the appropriate variables (for users of the Bash shell). To update your environment variables, run the following command: source /usr/share/dolfin/dolfin.conf For future reference, we recommend that you add this command to your configuration (.bashrc, .profile or similar). ---------------------------------------------------------------------------- + cd ../python + VERBOSE=1 + CMAKE_PREFIX_PATH=/builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/share/dolfin/cmake + CMAKE_SKIP_INSTALL_RPATH=yes + CMAKE_SKIP_RPATH=yes + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -DH5_USE_110_API' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/dolfin-2019.1.0.post0/.package_note-dolfin-2019.1.0.post0-34.fc38.x86_64.ld' + /usr/bin/python3 setup.py build '--executable=/usr/bin/python3 -sP' running build running build_py creating build creating build/lib.linux-x86_64-cpython-311 creating build/lib.linux-x86_64-cpython-311/dolfin copying dolfin/__init__.py -> build/lib.linux-x86_64-cpython-311/dolfin creating build/lib.linux-x86_64-cpython-311/dolfin/common copying dolfin/common/timer.py -> build/lib.linux-x86_64-cpython-311/dolfin/common copying dolfin/common/plotting.py -> build/lib.linux-x86_64-cpython-311/dolfin/common copying dolfin/common/__init__.py -> build/lib.linux-x86_64-cpython-311/dolfin/common creating build/lib.linux-x86_64-cpython-311/dolfin/function copying dolfin/function/specialfunctions.py -> build/lib.linux-x86_64-cpython-311/dolfin/function copying dolfin/function/multimeshfunctionspace.py -> build/lib.linux-x86_64-cpython-311/dolfin/function copying dolfin/function/multimeshfunction.py -> build/lib.linux-x86_64-cpython-311/dolfin/function copying dolfin/function/jit.py -> build/lib.linux-x86_64-cpython-311/dolfin/function copying dolfin/function/functionspace.py -> build/lib.linux-x86_64-cpython-311/dolfin/function copying dolfin/function/function.py -> build/lib.linux-x86_64-cpython-311/dolfin/function copying dolfin/function/expression.py -> build/lib.linux-x86_64-cpython-311/dolfin/function copying dolfin/function/constant.py -> build/lib.linux-x86_64-cpython-311/dolfin/function copying dolfin/function/argument.py -> build/lib.linux-x86_64-cpython-311/dolfin/function copying dolfin/function/__init__.py -> build/lib.linux-x86_64-cpython-311/dolfin/function creating build/lib.linux-x86_64-cpython-311/dolfin/fem copying dolfin/fem/solving.py -> build/lib.linux-x86_64-cpython-311/dolfin/fem copying dolfin/fem/solvers.py -> build/lib.linux-x86_64-cpython-311/dolfin/fem copying dolfin/fem/projection.py -> build/lib.linux-x86_64-cpython-311/dolfin/fem copying dolfin/fem/problem.py -> build/lib.linux-x86_64-cpython-311/dolfin/fem copying dolfin/fem/norms.py -> build/lib.linux-x86_64-cpython-311/dolfin/fem copying dolfin/fem/multimeshdirichletbc.py -> build/lib.linux-x86_64-cpython-311/dolfin/fem copying dolfin/fem/interpolation.py -> build/lib.linux-x86_64-cpython-311/dolfin/fem copying dolfin/fem/formmanipulations.py -> build/lib.linux-x86_64-cpython-311/dolfin/fem copying dolfin/fem/form.py -> build/lib.linux-x86_64-cpython-311/dolfin/fem copying dolfin/fem/errorcontrolgenerator.py -> build/lib.linux-x86_64-cpython-311/dolfin/fem copying dolfin/fem/dirichletbc.py -> build/lib.linux-x86_64-cpython-311/dolfin/fem copying dolfin/fem/assembling.py -> build/lib.linux-x86_64-cpython-311/dolfin/fem copying dolfin/fem/adaptivesolving.py -> build/lib.linux-x86_64-cpython-311/dolfin/fem copying dolfin/fem/__init__.py -> build/lib.linux-x86_64-cpython-311/dolfin/fem creating build/lib.linux-x86_64-cpython-311/dolfin/la copying dolfin/la/solver.py -> build/lib.linux-x86_64-cpython-311/dolfin/la copying dolfin/la/__init__.py -> build/lib.linux-x86_64-cpython-311/dolfin/la creating build/lib.linux-x86_64-cpython-311/dolfin/io copying dolfin/io/__init__.py -> build/lib.linux-x86_64-cpython-311/dolfin/io creating build/lib.linux-x86_64-cpython-311/dolfin/jit copying dolfin/jit/pybind11jit.py -> build/lib.linux-x86_64-cpython-311/dolfin/jit copying dolfin/jit/jit.py -> build/lib.linux-x86_64-cpython-311/dolfin/jit copying dolfin/jit/__init__.py -> build/lib.linux-x86_64-cpython-311/dolfin/jit creating build/lib.linux-x86_64-cpython-311/dolfin/mesh copying dolfin/mesh/ufl_util.py -> build/lib.linux-x86_64-cpython-311/dolfin/mesh copying dolfin/mesh/svgtools.py -> build/lib.linux-x86_64-cpython-311/dolfin/mesh copying dolfin/mesh/subdomain.py -> build/lib.linux-x86_64-cpython-311/dolfin/mesh copying dolfin/mesh/meshvaluecollection.py -> build/lib.linux-x86_64-cpython-311/dolfin/mesh copying dolfin/mesh/meshfunction.py -> build/lib.linux-x86_64-cpython-311/dolfin/mesh copying dolfin/mesh/ale.py -> build/lib.linux-x86_64-cpython-311/dolfin/mesh copying dolfin/mesh/__init__.py -> build/lib.linux-x86_64-cpython-311/dolfin/mesh creating build/lib.linux-x86_64-cpython-311/dolfin/multistage copying dolfin/multistage/rushlarsenschemes.py -> build/lib.linux-x86_64-cpython-311/dolfin/multistage copying dolfin/multistage/multistagesolvers.py -> build/lib.linux-x86_64-cpython-311/dolfin/multistage copying dolfin/multistage/multistagescheme.py -> build/lib.linux-x86_64-cpython-311/dolfin/multistage copying dolfin/multistage/factorize.py -> build/lib.linux-x86_64-cpython-311/dolfin/multistage copying dolfin/multistage/__init__.py -> build/lib.linux-x86_64-cpython-311/dolfin/multistage creating build/lib.linux-x86_64-cpython-311/dolfin/parameter copying dolfin/parameter/__init__.py -> build/lib.linux-x86_64-cpython-311/dolfin/parameter creating build/lib.linux-x86_64-cpython-311/dolfin_utils creating build/lib.linux-x86_64-cpython-311/dolfin_utils/meshconvert copying dolfin_utils/meshconvert/xml_writer.py -> build/lib.linux-x86_64-cpython-311/dolfin_utils/meshconvert copying dolfin_utils/meshconvert/meshconvert.py -> build/lib.linux-x86_64-cpython-311/dolfin_utils/meshconvert copying dolfin_utils/meshconvert/abaqus.py -> build/lib.linux-x86_64-cpython-311/dolfin_utils/meshconvert copying dolfin_utils/meshconvert/__init__.py -> build/lib.linux-x86_64-cpython-311/dolfin_utils/meshconvert creating build/lib.linux-x86_64-cpython-311/dolfin_utils/test copying dolfin_utils/test/skips.py -> build/lib.linux-x86_64-cpython-311/dolfin_utils/test copying dolfin_utils/test/paths.py -> build/lib.linux-x86_64-cpython-311/dolfin_utils/test copying dolfin_utils/test/fixtures.py -> build/lib.linux-x86_64-cpython-311/dolfin_utils/test copying dolfin_utils/test/__init__.py -> build/lib.linux-x86_64-cpython-311/dolfin_utils/test creating build/lib.linux-x86_64-cpython-311/fenics copying fenics/__init__.py -> build/lib.linux-x86_64-cpython-311/fenics running build_ext Re-run cmake no build system arguments -- The C compiler identification is GNU 12.1.1 -- The CXX compiler identification is GNU 12.1.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found PythonInterp: /usr/bin/python3 (found suitable version "3.11", minimum required is "3.6") -- Found PythonLibs: /usr/lib64/libpython3.11.so -- Performing Test HAS_FLTO -- Performing Test HAS_FLTO - Success -- Found pybind11: /usr/include (found version "2.10.0") -- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.0") -- Checking for one of the modules 'craypetsc_real;PETSc' -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of PetscInt -- Check size of PetscInt - done -- Checking for package 'PETSc4Py' -- PETSc4py could not be found. Be sure to set PYTHONPATH appropriately. (missing: PETSC4PY_INCLUDE_DIRS PETSC4PY_VERSION) Traceback (most recent call last): File "", line 1, in ModuleNotFoundError: No module named 'mpi4py' jfa: mpi4py not found -- Could NOT find MPI4PY (missing: MPI4PY_INCLUDE_DIR) -- Configuring done -- Generating done -- Build files have been written to: /builddir/build/BUILD/dolfin-2019.1.0.post0/python/build/temp.linux-x86_64-cpython-311 /usr/bin/cmake -S/builddir/build/BUILD/dolfin-2019.1.0.post0/python -B/builddir/build/BUILD/dolfin-2019.1.0.post0/python/build/temp.linux-x86_64-cpython-311 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/dolfin-2019.1.0.post0/python/build/temp.linux-x86_64-cpython-311/CMakeFiles /builddir/build/BUILD/dolfin-2019.1.0.post0/python/build/temp.linux-x86_64-cpython-311//CMakeFiles/progress.marks /usr/bin/gmake -f CMakeFiles/Makefile2 all gmake[1]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/python/build/temp.linux-x86_64-cpython-311' /usr/bin/gmake -f CMakeFiles/cpp.dir/build.make CMakeFiles/cpp.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/python/build/temp.linux-x86_64-cpython-311' cd /builddir/build/BUILD/dolfin-2019.1.0.post0/python/build/temp.linux-x86_64-cpython-311 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/dolfin-2019.1.0.post0/python /builddir/build/BUILD/dolfin-2019.1.0.post0/python /builddir/build/BUILD/dolfin-2019.1.0.post0/python/build/temp.linux-x86_64-cpython-311 /builddir/build/BUILD/dolfin-2019.1.0.post0/python/build/temp.linux-x86_64-cpython-311 /builddir/build/BUILD/dolfin-2019.1.0.post0/python/build/temp.linux-x86_64-cpython-311/CMakeFiles/cpp.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/python/build/temp.linux-x86_64-cpython-311' /usr/bin/gmake -f CMakeFiles/cpp.dir/build.make CMakeFiles/cpp.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/python/build/temp.linux-x86_64-cpython-311' [ 4%] Building CXX object CMakeFiles/cpp.dir/src/dolfin.cpp.o /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Dcpp_EXPORTS -isystem /usr/include/python3.11 -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -DVERSION_INFO=\"2019.1.0\" -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -O3 -DNDEBUG -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -std=c++11 -MD -MT CMakeFiles/cpp.dir/src/dolfin.cpp.o -MF CMakeFiles/cpp.dir/src/dolfin.cpp.o.d -o CMakeFiles/cpp.dir/src/dolfin.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/python/src/dolfin.cpp [ 9%] Building CXX object CMakeFiles/cpp.dir/src/parameter.cpp.o /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Dcpp_EXPORTS -isystem /usr/include/python3.11 -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -DVERSION_INFO=\"2019.1.0\" -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -O3 -DNDEBUG -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -std=c++11 -MD -MT CMakeFiles/cpp.dir/src/parameter.cpp.o -MF CMakeFiles/cpp.dir/src/parameter.cpp.o.d -o CMakeFiles/cpp.dir/src/parameter.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/python/src/parameter.cpp [ 14%] Building CXX object CMakeFiles/cpp.dir/src/adaptivity.cpp.o /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Dcpp_EXPORTS -isystem /usr/include/python3.11 -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -DVERSION_INFO=\"2019.1.0\" -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -O3 -DNDEBUG -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -std=c++11 -MD -MT CMakeFiles/cpp.dir/src/adaptivity.cpp.o -MF CMakeFiles/cpp.dir/src/adaptivity.cpp.o.d -o CMakeFiles/cpp.dir/src/adaptivity.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/python/src/adaptivity.cpp [ 19%] Building CXX object CMakeFiles/cpp.dir/src/ale.cpp.o /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Dcpp_EXPORTS -isystem /usr/include/python3.11 -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -DVERSION_INFO=\"2019.1.0\" -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -O3 -DNDEBUG -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -std=c++11 -MD -MT CMakeFiles/cpp.dir/src/ale.cpp.o -MF CMakeFiles/cpp.dir/src/ale.cpp.o.d -o CMakeFiles/cpp.dir/src/ale.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/python/src/ale.cpp [ 23%] Building CXX object CMakeFiles/cpp.dir/src/common.cpp.o /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Dcpp_EXPORTS -isystem /usr/include/python3.11 -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -DVERSION_INFO=\"2019.1.0\" -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -O3 -DNDEBUG -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -std=c++11 -MD -MT CMakeFiles/cpp.dir/src/common.cpp.o -MF CMakeFiles/cpp.dir/src/common.cpp.o.d -o CMakeFiles/cpp.dir/src/common.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/python/src/common.cpp [ 28%] Building CXX object CMakeFiles/cpp.dir/src/fem.cpp.o /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Dcpp_EXPORTS -isystem /usr/include/python3.11 -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -DVERSION_INFO=\"2019.1.0\" -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -O3 -DNDEBUG -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -std=c++11 -MD -MT CMakeFiles/cpp.dir/src/generation.cpp.o -MF CMakeFiles/cpp.dir/src/generation.cpp.o.d -o CMakeFiles/cpp.dir/src/generation.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/python/src/generation.cpp [ 42%] Building CXX object CMakeFiles/cpp.dir/src/geometry.cpp.o /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Dcpp_EXPORTS -isystem /usr/include/python3.11 -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -DVERSION_INFO=\"2019.1.0\" -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -O3 -DNDEBUG -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -std=c++11 -MD -MT CMakeFiles/cpp.dir/src/geometry.cpp.o -MF CMakeFiles/cpp.dir/src/geometry.cpp.o.d -o CMakeFiles/cpp.dir/src/geometry.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/python/src/geometry.cpp [ 47%] Building CXX object CMakeFiles/cpp.dir/src/graph.cpp.o /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Dcpp_EXPORTS -isystem /usr/include/python3.11 -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -DVERSION_INFO=\"2019.1.0\" -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -O3 -DNDEBUG -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -std=c++11 -MD -MT CMakeFiles/cpp.dir/src/graph.cpp.o -MF CMakeFiles/cpp.dir/src/graph.cpp.o.d -o CMakeFiles/cpp.dir/src/graph.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/python/src/graph.cpp [ 52%] Building CXX object CMakeFiles/cpp.dir/src/log.cpp.o /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Dcpp_EXPORTS -isystem /usr/include/python3.11 -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -DVERSION_INFO=\"2019.1.0\" -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -O3 -DNDEBUG -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -std=c++11 -MD -MT CMakeFiles/cpp.dir/src/log.cpp.o -MF CMakeFiles/cpp.dir/src/log.cpp.o.d -o CMakeFiles/cpp.dir/src/log.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/python/src/log.cpp [ 57%] Building CXX object CMakeFiles/cpp.dir/src/math.cpp.o /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Dcpp_EXPORTS -isystem /usr/include/python3.11 -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -DVERSION_INFO=\"2019.1.0\" -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -O3 -DNDEBUG -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -std=c++11 -MD -MT CMakeFiles/cpp.dir/src/math.cpp.o -MF CMakeFiles/cpp.dir/src/math.cpp.o.d -o CMakeFiles/cpp.dir/src/math.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/python/src/math.cpp [ 61%] Building CXX object CMakeFiles/cpp.dir/src/mesh.cpp.o /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Dcpp_EXPORTS -isystem /usr/include/python3.11 -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -DVERSION_INFO=\"2019.1.0\" -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -O3 -DNDEBUG -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -std=c++11 -MD -MT CMakeFiles/cpp.dir/src/mesh.cpp.o -MF CMakeFiles/cpp.dir/src/mesh.cpp.o.d -o CMakeFiles/cpp.dir/src/mesh.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/python/src/mesh.cpp In file included from /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/BoundaryMesh.h:28, from /builddir/build/BUILD/dolfin-2019.1.0.post0/python/src/mesh.cpp:27: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MeshFunction.h: In instantiation of ‘dolfin::MeshFunction::MeshFunction(std::shared_ptr, std::size_t, const dolfin::MeshDomains&) [with T = bool; std::size_t = long unsigned int]’: /usr/include/pybind11/detail/init.h:73:12: required from ‘Class* pybind11::detail::initimpl::construct_or_initialize(Args&& ...) [with Class = dolfin::MeshFunction; Args = {std::shared_ptr, long unsigned int, const dolfin::MeshDomains&}; typename std::enable_if::value, int>::type = 0]’ /usr/include/pybind11/detail/init.h:203:70: required from ‘static void pybind11::detail::initimpl::constructor::execute(Class&, const Extra& ...) [with Class = pybind11::class_, std::shared_ptr >, dolfin::Variable>; Extra = {}; typename std::enable_if<(! Class::has_alias), int>::type = 0; Args = {std::shared_ptr, long unsigned int, const dolfin::MeshDomains&}]’ /usr/include/pybind11/pybind11.h:1596:21: required from ‘pybind11::class_& pybind11::class_::def(const pybind11::detail::initimpl::constructor&, const Extra& ...) [with Args = {std::shared_ptr, long unsigned int, const dolfin::MeshDomains&}; Extra = {}; type_ = dolfin::MeshFunction; options = {std::shared_ptr >, dolfin::Variable}]’ /builddir/build/BUILD/dolfin-2019.1.0.post0/python/src/mesh.cpp:429:5: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MeshFunction.h:398:23: warning: unused variable ‘D’ [-Wunused-variable] 398 | const std::size_t D = _mesh->topology().dim(); | ^ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MeshFunction.h: In instantiation of ‘dolfin::MeshFunction::MeshFunction(std::shared_ptr, std::size_t, const dolfin::MeshDomains&) [with T = int; std::size_t = long unsigned int]’: /usr/include/pybind11/detail/init.h:73:12: required from ‘Class* pybind11::detail::initimpl::construct_or_initialize(Args&& ...) [with Class = dolfin::MeshFunction; Args = {std::shared_ptr, long unsigned int, const dolfin::MeshDomains&}; typename std::enable_if::value, int>::type = 0]’ /usr/include/pybind11/detail/init.h:203:70: required from ‘static void pybind11::detail::initimpl::constructor::execute(Class&, const Extra& ...) [with Class = pybind11::class_, std::shared_ptr >, dolfin::Variable>; Extra = {}; typename std::enable_if<(! Class::has_alias), int>::type = 0; Args = {std::shared_ptr, long unsigned int, const dolfin::MeshDomains&}]’ /usr/include/pybind11/pybind11.h:1596:21: required from ‘pybind11::class_& pybind11::class_::def(const pybind11::detail::initimpl::constructor&, const Extra& ...) [with Args = {std::shared_ptr, long unsigned int, const dolfin::MeshDomains&}; Extra = {}; type_ = dolfin::MeshFunction; options = {std::shared_ptr >, dolfin::Variable}]’ /builddir/build/BUILD/dolfin-2019.1.0.post0/python/src/mesh.cpp:430:5: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MeshFunction.h:398:23: warning: unused variable ‘D’ [-Wunused-variable] /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MeshFunction.h: In instantiation of ‘dolfin::MeshFunction::MeshFunction(std::shared_ptr, std::size_t, const dolfin::MeshDomains&) [with T = double; std::size_t = long unsigned int]’: /usr/include/pybind11/detail/init.h:73:12: required from ‘Class* pybind11::detail::initimpl::construct_or_initialize(Args&& ...) [with Class = dolfin::MeshFunction; Args = {std::shared_ptr, long unsigned int, const dolfin::MeshDomains&}; typename std::enable_if::value, int>::type = 0]’ /usr/include/pybind11/detail/init.h:203:70: required from ‘static void pybind11::detail::initimpl::constructor::execute(Class&, const Extra& ...) [with Class = pybind11::class_, std::shared_ptr >, dolfin::Variable>; Extra = {}; typename std::enable_if<(! Class::has_alias), int>::type = 0; Args = {std::shared_ptr, long unsigned int, const dolfin::MeshDomains&}]’ /usr/include/pybind11/pybind11.h:1596:21: required from ‘pybind11::class_& pybind11::class_::def(const pybind11::detail::initimpl::constructor&, const Extra& ...) [with Args = {std::shared_ptr, long unsigned int, const dolfin::MeshDomains&}; Extra = {}; type_ = dolfin::MeshFunction; options = {std::shared_ptr >, dolfin::Variable}]’ /builddir/build/BUILD/dolfin-2019.1.0.post0/python/src/mesh.cpp:431:5: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MeshFunction.h:398:23: warning: unused variable ‘D’ [-Wunused-variable] /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MeshFunction.h: In instantiation of ‘dolfin::MeshFunction::MeshFunction(std::shared_ptr, std::size_t, const dolfin::MeshDomains&) [with T = long unsigned int; std::size_t = long unsigned int]’: /usr/include/pybind11/detail/init.h:73:12: required from ‘Class* pybind11::detail::initimpl::construct_or_initialize(Args&& ...) [with Class = dolfin::MeshFunction; Args = {std::shared_ptr, long unsigned int, const dolfin::MeshDomains&}; typename std::enable_if::value, int>::type = 0]’ /usr/include/pybind11/detail/init.h:203:70: required from ‘static void pybind11::detail::initimpl::constructor::execute(Class&, const Extra& ...) [with Class = pybind11::class_, std::shared_ptr >, dolfin::Variable>; Extra = {}; typename std::enable_if<(! Class::has_alias), int>::type = 0; Args = {std::shared_ptr, long unsigned int, const dolfin::MeshDomains&}]’ /usr/include/pybind11/pybind11.h:1596:21: required from ‘pybind11::class_& pybind11::class_::def(const pybind11::detail::initimpl::constructor&, const Extra& ...) [with Args = {std::shared_ptr, long unsigned int, const dolfin::MeshDomains&}; Extra = {}; type_ = dolfin::MeshFunction; options = {std::shared_ptr >, dolfin::Variable}]’ /builddir/build/BUILD/dolfin-2019.1.0.post0/python/src/mesh.cpp:432:5: required from here /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/mesh/MeshFunction.h:398:23: warning: unused variable ‘D’ [-Wunused-variable] [ 66%] Building CXX object CMakeFiles/cpp.dir/src/multistage.cpp.o /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Dcpp_EXPORTS -isystem /usr/include/python3.11 -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -DVERSION_INFO=\"2019.1.0\" -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -O3 -DNDEBUG -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -std=c++11 -MD -MT CMakeFiles/cpp.dir/src/multistage.cpp.o -MF CMakeFiles/cpp.dir/src/multistage.cpp.o.d -o CMakeFiles/cpp.dir/src/multistage.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/python/src/multistage.cpp [ 71%] Building CXX object CMakeFiles/cpp.dir/src/ts.cpp.o /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Dcpp_EXPORTS -isystem /usr/include/python3.11 -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -DVERSION_INFO=\"2019.1.0\" -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -O3 -DNDEBUG -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -std=c++11 -MD -MT CMakeFiles/cpp.dir/src/ts.cpp.o -MF CMakeFiles/cpp.dir/src/ts.cpp.o.d -o CMakeFiles/cpp.dir/src/ts.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/python/src/ts.cpp [ 76%] Building CXX object CMakeFiles/cpp.dir/src/io.cpp.o /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Dcpp_EXPORTS -isystem /usr/include/python3.11 -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -DVERSION_INFO=\"2019.1.0\" -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -O3 -DNDEBUG -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -std=c++11 -MD -MT CMakeFiles/cpp.dir/src/io.cpp.o -MF CMakeFiles/cpp.dir/src/io.cpp.o.d -o CMakeFiles/cpp.dir/src/io.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/python/src/io.cpp In file included from /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.h:30, from /builddir/build/BUILD/dolfin-2019.1.0.post0/python/src/io.cpp:26: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In static member function ‘static void dolfin::HDF5Interface::add_attribute_value(hid_t, std::string, const T&) [with T = std::__cxx11::basic_string; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:578:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 578 | herr_t status = H5Tset_size(datatype_id, attribute_value.size()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In static member function ‘static void dolfin::HDF5Interface::get_attribute_value(hid_t, hid_t, T&) [with T = std::__cxx11::basic_string; hid_t = long int]’: /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:661:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 661 | herr_t status = H5Tset_size(memtype, string_length); | ^~~~~~ [ 80%] Building CXX object CMakeFiles/cpp.dir/src/la.cpp.o /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Dcpp_EXPORTS -isystem /usr/include/python3.11 -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -DVERSION_INFO=\"2019.1.0\" -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -O3 -DNDEBUG -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -std=c++11 -MD -MT CMakeFiles/cpp.dir/src/la.cpp.o -MF CMakeFiles/cpp.dir/src/la.cpp.o.d -o CMakeFiles/cpp.dir/src/la.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/python/src/la.cpp [ 85%] Building CXX object CMakeFiles/cpp.dir/src/nls.cpp.o /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Dcpp_EXPORTS -isystem /usr/include/python3.11 -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -DVERSION_INFO=\"2019.1.0\" -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -O3 -DNDEBUG -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -std=c++11 -MD -MT CMakeFiles/cpp.dir/src/nls.cpp.o -MF CMakeFiles/cpp.dir/src/nls.cpp.o.d -o CMakeFiles/cpp.dir/src/nls.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/python/src/nls.cpp [ 90%] Building CXX object CMakeFiles/cpp.dir/src/refinement.cpp.o /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Dcpp_EXPORTS -isystem /usr/include/python3.11 -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -DVERSION_INFO=\"2019.1.0\" -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -O3 -DNDEBUG -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -std=c++11 -MD -MT CMakeFiles/cpp.dir/src/refinement.cpp.o -MF CMakeFiles/cpp.dir/src/refinement.cpp.o.d -o CMakeFiles/cpp.dir/src/refinement.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/python/src/refinement.cpp [ 95%] Building CXX object CMakeFiles/cpp.dir/src/MPICommWrapper.cpp.o /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Dcpp_EXPORTS -isystem /usr/include/python3.11 -isystem /usr/lib/python3.11/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -DVERSION_INFO=\"2019.1.0\" -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -O3 -DNDEBUG -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -std=c++11 -MD -MT CMakeFiles/cpp.dir/src/MPICommWrapper.cpp.o -MF CMakeFiles/cpp.dir/src/MPICommWrapper.cpp.o.d -o CMakeFiles/cpp.dir/src/MPICommWrapper.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0/python/src/MPICommWrapper.cpp [100%] Linking CXX shared library /builddir/build/BUILD/dolfin-2019.1.0.post0/python/build/lib.linux-x86_64-cpython-311/dolfin/cpp.cpython-311-x86_64-linux-gnu.so /usr/bin/cmake -E cmake_link_script CMakeFiles/cpp.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DH5_USE_110_API -DVERSION_INFO=\"2019.1.0\" -I/builddir/build/BUILD/dolfin-2019.1.0.post0 -O3 -DNDEBUG -flto -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/dolfin-2019.1.0.post0/.package_note-dolfin-2019.1.0.post0-34.fc38.x86_64.ld -shared -Wl,-soname,cpp.cpython-311-x86_64-linux-gnu.so -o /builddir/build/BUILD/dolfin-2019.1.0.post0/python/build/lib.linux-x86_64-cpython-311/dolfin/cpp.cpython-311-x86_64-linux-gnu.so CMakeFiles/cpp.dir/src/dolfin.cpp.o CMakeFiles/cpp.dir/src/parameter.cpp.o CMakeFiles/cpp.dir/src/adaptivity.cpp.o CMakeFiles/cpp.dir/src/ale.cpp.o CMakeFiles/cpp.dir/src/common.cpp.o CMakeFiles/cpp.dir/src/fem.cpp.o CMakeFiles/cpp.dir/src/function.cpp.o CMakeFiles/cpp.dir/src/generation.cpp.o CMakeFiles/cpp.dir/src/geometry.cpp.o CMakeFiles/cpp.dir/src/graph.cpp.o CMakeFiles/cpp.dir/src/log.cpp.o CMakeFiles/cpp.dir/src/math.cpp.o CMakeFiles/cpp.dir/src/mesh.cpp.o CMakeFiles/cpp.dir/src/multistage.cpp.o CMakeFiles/cpp.dir/src/ts.cpp.o CMakeFiles/cpp.dir/src/io.cpp.o CMakeFiles/cpp.dir/src/la.cpp.o CMakeFiles/cpp.dir/src/nls.cpp.o CMakeFiles/cpp.dir/src/refinement.cpp.o CMakeFiles/cpp.dir/src/MPICommWrapper.cpp.o -Wl,-rpath,/builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64 /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/libdolfin.so.2019.1.0 /usr/lib64/libboost_timer.so /usr/lib64/libboost_chrono.so /lib64/libhdf5.so /usr/lib64/libpetsc.so /usr/bin/strip /builddir/build/BUILD/dolfin-2019.1.0.post0/python/build/lib.linux-x86_64-cpython-311/dolfin/cpp.cpython-311-x86_64-linux-gnu.so gmake[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/python/build/temp.linux-x86_64-cpython-311' [100%] Built target cpp gmake[1]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/python/build/temp.linux-x86_64-cpython-311' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/dolfin-2019.1.0.post0/python/build/temp.linux-x86_64-cpython-311/CMakeFiles 0 + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.AVHaER + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64 ++ dirname /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/dolfin-2019.1.0.post0/.package_note-dolfin-2019.1.0.post0-34.fc38.x86_64.ld' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd dolfin-2019.1.0.post0 + cd build + /usr/bin/make install DESTDIR=/builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64 'INSTALL=/usr/bin/install -p' /usr/bin/cmake -S/builddir/build/BUILD/dolfin-2019.1.0.post0 -B/builddir/build/BUILD/dolfin-2019.1.0.post0/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/dolfin-2019.1.0.post0/build/CMakeFiles /builddir/build/BUILD/dolfin-2019.1.0.post0/build//CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' /usr/bin/make -f dolfin/ale/CMakeFiles/compile_ale_forms.dir/build.make dolfin/ale/CMakeFiles/compile_ale_forms.dir/depend make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/dolfin-2019.1.0.post0 /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin/ale /builddir/build/BUILD/dolfin-2019.1.0.post0/build /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin/ale /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin/ale/CMakeFiles/compile_ale_forms.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' /usr/bin/make -f dolfin/ale/CMakeFiles/compile_ale_forms.dir/build.make dolfin/ale/CMakeFiles/compile_ale_forms.dir/build make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Nothing to be done for 'dolfin/ale/CMakeFiles/compile_ale_forms.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [ 0%] Built target compile_ale_forms /usr/bin/make -f dolfin/CMakeFiles/dolfin.dir/build.make dolfin/CMakeFiles/dolfin.dir/depend make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' cd /builddir/build/BUILD/dolfin-2019.1.0.post0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/dolfin-2019.1.0.post0 /builddir/build/BUILD/dolfin-2019.1.0.post0/dolfin /builddir/build/BUILD/dolfin-2019.1.0.post0/build /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin /builddir/build/BUILD/dolfin-2019.1.0.post0/build/dolfin/CMakeFiles/dolfin.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' /usr/bin/make -f dolfin/CMakeFiles/dolfin.dir/build.make dolfin/CMakeFiles/dolfin.dir/build make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[2]: Nothing to be done for 'dolfin/CMakeFiles/dolfin.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' [100%] Built target dolfin make[1]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/dolfin-2019.1.0.post0/build/CMakeFiles 0 /usr/bin/make -f CMakeFiles/Makefile2 preinstall make[1]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' make[1]: Nothing to be done for 'preinstall'. make[1]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0/build' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "RelWithDebInfo" -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/bin/dolfin-convert -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/bin/dolfin-order -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/bin/dolfin-plot -- Installing: 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/builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/include/dolfin/mesh/MeshHierarchy.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/include/dolfin/mesh/MeshOrdering.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/include/dolfin/mesh/MeshPartitioning.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/include/dolfin/mesh/MeshQuality.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/include/dolfin/mesh/MeshRelation.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/include/dolfin/mesh/MeshRenumbering.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/include/dolfin/mesh/MeshSmoothing.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/include/dolfin/mesh/MeshTopology.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/include/dolfin/mesh/MeshTransformation.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/include/dolfin/mesh/MeshValueCollection.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/include/dolfin/mesh/MultiMesh.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/include/dolfin/mesh/PeriodicBoundaryComputation.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/include/dolfin/mesh/PointCell.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/include/dolfin/mesh/QuadrilateralCell.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/include/dolfin/mesh/SubDomain.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/include/dolfin/mesh/SubMesh.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/include/dolfin/mesh/SubsetIterator.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/include/dolfin/mesh/TetrahedronCell.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/include/dolfin/mesh/TopologyComputation.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/include/dolfin/mesh/TriangleCell.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/include/dolfin/mesh/Vertex.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/include/dolfin/multistage/dolfin_multistage.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/include/dolfin/multistage/MultiStageScheme.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/include/dolfin/multistage/PointIntegralSolver.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/include/dolfin/multistage/RKSolver.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/include/dolfin/nls/dolfin_nls.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/include/dolfin/nls/NewtonSolver.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/include/dolfin/nls/NonlinearProblem.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/include/dolfin/nls/OptimisationProblem.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/include/dolfin/nls/PETScSNESSolver.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/include/dolfin/nls/PETScTAOSolver.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/include/dolfin/nls/TAOLinearBoundSolver.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/include/dolfin/parameter/dolfin_parameter.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/include/dolfin/parameter/GlobalParameters.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/include/dolfin/parameter/Parameter.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/include/dolfin/parameter/Parameters.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/include/dolfin/refinement/BisectionRefinement1D.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/include/dolfin/refinement/dolfin_refinement.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/include/dolfin/refinement/LocalMeshCoarsening.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/include/dolfin/refinement/ParallelRefinement.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/include/dolfin/refinement/PlazaRefinementND.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/include/dolfin/refinement/refine.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/include/dolfin/refinement/RegularCutRefinement.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/include/dolfin/ts/dolfin_ts.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/include/dolfin/ts/CVode.h -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/libdolfin.so.2019.1.0 -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/libdolfin.so.2019.1 -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/libdolfin.so -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/share/dolfin/cmake/DOLFINTargets.cmake -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/share/dolfin/cmake/DOLFINTargets-relwithdebinfo.cmake -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/share/dolfin/cmake/FindPETSc.cmake -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/share/dolfin/cmake/FindSLEPc.cmake -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/share/dolfin/cmake/DOLFINConfig.cmake -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/share/dolfin/cmake/DOLFINConfigVersion.cmake -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/share/dolfin/cmake/UseDOLFIN.cmake -- Installing: /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/pkgconfig/dolfin.pc ---------------------------------------------------------------------------- DOLFIN has now been installed in /usr and the demo programs have been installed in /usr/share/dolfin/demo Before rushing off to try the demos, don't forget to update your environment variables. This can be done easily using the helper file 'dolfin.conf' which sets the appropriate variables (for users of the Bash shell). To update your environment variables, run the following command: source /usr/share/dolfin/dolfin.conf For future reference, we recommend that you add this command to your configuration (.bashrc, .profile or similar). ---------------------------------------------------------------------------- + cd ../python + VERBOSE=1 + CMAKE_PREFIX_PATH=/builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/share/dolfin/cmake + CMAKE_SKIP_INSTALL_RPATH=yes + CMAKE_SKIP_RPATH=yes + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/dolfin-2019.1.0.post0/.package_note-dolfin-2019.1.0.post0-34.fc38.x86_64.ld' + /usr/bin/python3 setup.py install -O1 --skip-build --root /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64 --prefix /usr running install /usr/lib/python3.11/site-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running install_lib creating /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11 creating /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages creating /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/fenics copying build/lib.linux-x86_64-cpython-311/fenics/__init__.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/fenics creating /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin_utils creating /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin_utils/test copying build/lib.linux-x86_64-cpython-311/dolfin_utils/test/__init__.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin_utils/test copying build/lib.linux-x86_64-cpython-311/dolfin_utils/test/fixtures.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin_utils/test copying build/lib.linux-x86_64-cpython-311/dolfin_utils/test/paths.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin_utils/test copying build/lib.linux-x86_64-cpython-311/dolfin_utils/test/skips.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin_utils/test creating /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin_utils/meshconvert copying build/lib.linux-x86_64-cpython-311/dolfin_utils/meshconvert/__init__.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin_utils/meshconvert copying build/lib.linux-x86_64-cpython-311/dolfin_utils/meshconvert/abaqus.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin_utils/meshconvert copying build/lib.linux-x86_64-cpython-311/dolfin_utils/meshconvert/meshconvert.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin_utils/meshconvert copying build/lib.linux-x86_64-cpython-311/dolfin_utils/meshconvert/xml_writer.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin_utils/meshconvert creating /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin copying build/lib.linux-x86_64-cpython-311/dolfin/cpp.cpython-311-x86_64-linux-gnu.so -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin creating /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin/parameter copying build/lib.linux-x86_64-cpython-311/dolfin/parameter/__init__.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin/parameter creating /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin/multistage copying build/lib.linux-x86_64-cpython-311/dolfin/multistage/__init__.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin/multistage copying build/lib.linux-x86_64-cpython-311/dolfin/multistage/factorize.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin/multistage copying build/lib.linux-x86_64-cpython-311/dolfin/multistage/multistagescheme.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin/multistage copying build/lib.linux-x86_64-cpython-311/dolfin/multistage/multistagesolvers.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin/multistage copying build/lib.linux-x86_64-cpython-311/dolfin/multistage/rushlarsenschemes.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin/multistage creating /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin/mesh copying build/lib.linux-x86_64-cpython-311/dolfin/mesh/__init__.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin/mesh copying build/lib.linux-x86_64-cpython-311/dolfin/mesh/ale.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin/mesh copying build/lib.linux-x86_64-cpython-311/dolfin/mesh/meshfunction.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin/mesh copying build/lib.linux-x86_64-cpython-311/dolfin/mesh/meshvaluecollection.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin/mesh copying build/lib.linux-x86_64-cpython-311/dolfin/mesh/subdomain.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin/mesh copying build/lib.linux-x86_64-cpython-311/dolfin/mesh/svgtools.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin/mesh copying build/lib.linux-x86_64-cpython-311/dolfin/mesh/ufl_util.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin/mesh creating /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin/jit copying build/lib.linux-x86_64-cpython-311/dolfin/jit/__init__.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin/jit copying build/lib.linux-x86_64-cpython-311/dolfin/jit/jit.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin/jit copying build/lib.linux-x86_64-cpython-311/dolfin/jit/pybind11jit.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin/jit creating /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin/io copying build/lib.linux-x86_64-cpython-311/dolfin/io/__init__.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin/io creating /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin/la copying build/lib.linux-x86_64-cpython-311/dolfin/la/__init__.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin/la copying build/lib.linux-x86_64-cpython-311/dolfin/la/solver.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin/la creating /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin/fem copying build/lib.linux-x86_64-cpython-311/dolfin/fem/__init__.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin/fem copying build/lib.linux-x86_64-cpython-311/dolfin/fem/adaptivesolving.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin/fem copying build/lib.linux-x86_64-cpython-311/dolfin/fem/assembling.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin/fem copying build/lib.linux-x86_64-cpython-311/dolfin/fem/dirichletbc.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin/fem copying build/lib.linux-x86_64-cpython-311/dolfin/fem/errorcontrolgenerator.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin/fem copying build/lib.linux-x86_64-cpython-311/dolfin/fem/form.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin/fem copying build/lib.linux-x86_64-cpython-311/dolfin/fem/formmanipulations.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin/fem copying build/lib.linux-x86_64-cpython-311/dolfin/fem/interpolation.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin/fem copying build/lib.linux-x86_64-cpython-311/dolfin/fem/multimeshdirichletbc.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin/fem copying build/lib.linux-x86_64-cpython-311/dolfin/fem/norms.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin/fem copying build/lib.linux-x86_64-cpython-311/dolfin/fem/problem.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin/fem copying build/lib.linux-x86_64-cpython-311/dolfin/fem/projection.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin/fem copying build/lib.linux-x86_64-cpython-311/dolfin/fem/solvers.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin/fem copying build/lib.linux-x86_64-cpython-311/dolfin/fem/solving.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin/fem creating /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin/function copying build/lib.linux-x86_64-cpython-311/dolfin/function/__init__.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin/function copying build/lib.linux-x86_64-cpython-311/dolfin/function/argument.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin/function copying build/lib.linux-x86_64-cpython-311/dolfin/function/constant.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin/function copying build/lib.linux-x86_64-cpython-311/dolfin/function/expression.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin/function copying build/lib.linux-x86_64-cpython-311/dolfin/function/function.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin/function copying build/lib.linux-x86_64-cpython-311/dolfin/function/functionspace.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin/function copying build/lib.linux-x86_64-cpython-311/dolfin/function/jit.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin/function copying build/lib.linux-x86_64-cpython-311/dolfin/function/multimeshfunction.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin/function copying build/lib.linux-x86_64-cpython-311/dolfin/function/multimeshfunctionspace.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin/function copying build/lib.linux-x86_64-cpython-311/dolfin/function/specialfunctions.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin/function creating /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin/common copying build/lib.linux-x86_64-cpython-311/dolfin/common/__init__.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin/common copying build/lib.linux-x86_64-cpython-311/dolfin/common/plotting.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin/common copying build/lib.linux-x86_64-cpython-311/dolfin/common/timer.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin/common copying build/lib.linux-x86_64-cpython-311/dolfin/__init__.py -> /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/fenics/__init__.py to __init__.cpython-311.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin_utils/test/__init__.py to __init__.cpython-311.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin_utils/test/fixtures.py to fixtures.cpython-311.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin_utils/test/paths.py to paths.cpython-311.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin_utils/test/skips.py to skips.cpython-311.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin_utils/meshconvert/__init__.py to __init__.cpython-311.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin_utils/meshconvert/abaqus.py to abaqus.cpython-311.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin_utils/meshconvert/meshconvert.py to meshconvert.cpython-311.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin_utils/meshconvert/xml_writer.py to xml_writer.cpython-311.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin/parameter/__init__.py to __init__.cpython-311.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin/multistage/__init__.py to __init__.cpython-311.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin/multistage/factorize.py to factorize.cpython-311.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin/multistage/multistagescheme.py to multistagescheme.cpython-311.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin/multistage/multistagesolvers.py to multistagesolvers.cpython-311.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin/multistage/rushlarsenschemes.py to rushlarsenschemes.cpython-311.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin/mesh/__init__.py to __init__.cpython-311.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin/mesh/ale.py to ale.cpython-311.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin/mesh/meshfunction.py to meshfunction.cpython-311.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin/mesh/meshvaluecollection.py to meshvaluecollection.cpython-311.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin/mesh/subdomain.py to subdomain.cpython-311.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin/mesh/svgtools.py to svgtools.cpython-311.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin/mesh/ufl_util.py to ufl_util.cpython-311.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin/jit/__init__.py to __init__.cpython-311.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin/jit/jit.py to jit.cpython-311.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin/jit/pybind11jit.py to pybind11jit.cpython-311.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin/io/__init__.py to __init__.cpython-311.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin/la/__init__.py to __init__.cpython-311.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin/la/solver.py to solver.cpython-311.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin/fem/__init__.py to __init__.cpython-311.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin/fem/adaptivesolving.py to adaptivesolving.cpython-311.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin/fem/assembling.py to assembling.cpython-311.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin/fem/dirichletbc.py to dirichletbc.cpython-311.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin/fem/errorcontrolgenerator.py to errorcontrolgenerator.cpython-311.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin/fem/form.py to form.cpython-311.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin/fem/formmanipulations.py to formmanipulations.cpython-311.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin/fem/interpolation.py to interpolation.cpython-311.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin/fem/multimeshdirichletbc.py to multimeshdirichletbc.cpython-311.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin/fem/norms.py to norms.cpython-311.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin/fem/problem.py to problem.cpython-311.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin/fem/projection.py to projection.cpython-311.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin/fem/solvers.py to solvers.cpython-311.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin/fem/solving.py to solving.cpython-311.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin/function/__init__.py to __init__.cpython-311.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin/function/argument.py to argument.cpython-311.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin/function/constant.py to constant.cpython-311.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin/function/expression.py to expression.cpython-311.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin/function/function.py to function.cpython-311.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin/function/functionspace.py to functionspace.cpython-311.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin/function/jit.py to jit.cpython-311.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin/function/multimeshfunction.py to multimeshfunction.cpython-311.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin/function/multimeshfunctionspace.py to multimeshfunctionspace.cpython-311.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin/function/specialfunctions.py to specialfunctions.cpython-311.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin/common/__init__.py to __init__.cpython-311.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin/common/plotting.py to plotting.cpython-311.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin/common/timer.py to timer.cpython-311.pyc byte-compiling /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin/__init__.py to __init__.cpython-311.pyc writing byte-compilation script '/tmp/tmp1pqnrcsu.py' /usr/bin/python3 /tmp/tmp1pqnrcsu.py removing /tmp/tmp1pqnrcsu.py running install_egg_info running egg_info creating fenics_dolfin.egg-info writing fenics_dolfin.egg-info/PKG-INFO writing dependency_links to fenics_dolfin.egg-info/dependency_links.txt writing requirements to fenics_dolfin.egg-info/requires.txt writing top-level names to fenics_dolfin.egg-info/top_level.txt writing manifest file 'fenics_dolfin.egg-info/SOURCES.txt' reading manifest file 'fenics_dolfin.egg-info/SOURCES.txt' writing manifest file 'fenics_dolfin.egg-info/SOURCES.txt' Copying fenics_dolfin.egg-info to /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/fenics_dolfin-2019.1.0-py3.11.egg-info running install_scripts + rm -rfv /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/bin/__pycache__ + sed -r -i '1 {s|#!/usr/bin/env python.*|#!/usr/bin/python3|}' /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/bin/dolfin-order /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/bin/dolfin-plot /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/bin/dolfin-convert + rm /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/share/dolfin/dolfin.conf + chrpath /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin/cpp.cpython-311-x86_64-linux-gnu.so /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin/cpp.cpython-311-x86_64-linux-gnu.so: RUNPATH=/builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64 + chrpath --delete /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin/cpp.cpython-311-x86_64-linux-gnu.so + /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 2019.1.0.post0-34.fc38 --unique-debug-suffix -2019.1.0.post0-34.fc38.x86_64 --unique-debug-src-base dolfin-2019.1.0.post0-34.fc38.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/dolfin-2019.1.0.post0 extracting debug info from /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/libdolfin.so.2019.1.0 original debug info size: 156288kB, size after compression: 137888kB /usr/bin/sepdebugcrcfix: Updated 1 CRC32s, 0 CRC32s did match. 9132 blocks + /usr/lib/rpm/check-buildroot /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11/site-packages/dolfin/cpp.cpython-311-x86_64-linux-gnu.so Found '/builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64' in installed files; aborting + : + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs mangling shebang in /usr/bin/dolfin-get-demos from /bin/bash to #!/usr/bin/bash mangling shebang in /usr/bin/fenics-version from /bin/bash to #!/usr/bin/bash mangling shebang in /usr/bin/dolfin-version from /bin/bash to #!/usr/bin/bash + /usr/lib/rpm/brp-remove-la-files + /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 Bytecompiling .py files below /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/lib64/python3.11 using python3.11 + /usr/lib/rpm/redhat/brp-python-hardlink Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.8TTmg6 + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/dolfin-2019.1.0.post0/.package_note-dolfin-2019.1.0.post0-34.fc38.x86_64.ld' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + '[' -f /usr/lib/rpm/generate-rpm-note.sh ']' + /usr/lib/rpm/generate-rpm-note.sh dolfin 2019.1.0.post0-34.fc38 x86_64 + cd dolfin-2019.1.0.post0 + ctest -V -j2 UpdateCTestConfiguration from :/builddir/build/BUILD/dolfin-2019.1.0.post0/DartConfiguration.tcl UpdateCTestConfiguration from :/builddir/build/BUILD/dolfin-2019.1.0.post0/DartConfiguration.tcl Test project /builddir/build/BUILD/dolfin-2019.1.0.post0 Constructing a list of tests Updating test list for fixtures Added 0 tests to meet fixture requirements Checking test dependency graph... Checking test dependency graph end No tests were found!!! + RPM_EC=0 ++ jobs -p + exit 0 Processing files: dolfin-2019.1.0.post0-34.fc38.x86_64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.Z6xPn9 + umask 022 + cd /builddir/build/BUILD + cd dolfin-2019.1.0.post0 + DOCDIR=/builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/share/doc/dolfin + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/share/doc/dolfin + cp -pr README.rst /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/share/doc/dolfin + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.ULLc2G + umask 022 + cd /builddir/build/BUILD + cd dolfin-2019.1.0.post0 + LICENSEDIR=/builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/share/licenses/dolfin + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/share/licenses/dolfin + cp -pr COPYING /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/share/licenses/dolfin + cp -pr COPYING.LESSER /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/share/licenses/dolfin + cp -pr AUTHORS /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64/usr/share/licenses/dolfin + RPM_EC=0 ++ jobs -p + exit 0 Provides: dolfin = 2019.1.0.post0-34.fc38 dolfin(x86-64) = 2019.1.0.post0-34.fc38 libdolfin.so.2019.1()(64bit) Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/bash libboost_filesystem.so.1.78.0()(64bit) libboost_iostreams.so.1.78.0()(64bit) libboost_program_options.so.1.78.0()(64bit) libboost_timer.so.1.78.0()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.4)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libhdf5.so.200()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libpetsc.so.3.17()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.22)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libz.so.1()(64bit) rtld(GNU_HASH) Processing files: dolfin-devel-2019.1.0.post0-34.fc38.x86_64 Provides: dolfin-devel = 2019.1.0.post0-34.fc38 dolfin-devel(x86-64) = 2019.1.0.post0-34.fc38 pkgconfig(dolfin) = 2019.1.0 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/pkg-config libdolfin.so.2019.1()(64bit) Processing files: python3-dolfin-2019.1.0.post0-34.fc38.x86_64 Provides: python-dolfin = 2019.1.0.post0-34.fc38 python3-dolfin = 2019.1.0.post0-34.fc38 python3-dolfin(x86-64) = 2019.1.0.post0-34.fc38 python3.11-dolfin = 2019.1.0.post0-34.fc38 python3.11dist(fenics-dolfin) = 2019.1 python3dist(fenics-dolfin) = 2019.1 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: (python3.11dist(fenics-dijitso) < 2019.2~~ with python3.11dist(fenics-dijitso) >= 2019.1) (python3.11dist(fenics-ffc) < 2019.2~~ with python3.11dist(fenics-ffc) >= 2019.1) (python3.11dist(fenics-ufl) < 2019.2~~ with python3.11dist(fenics-ufl) >= 2019.1) /usr/bin/python3 libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.4)(64bit) libdolfin.so.2019.1()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.13)(64bit) libstdc++.so.6(CXXABI_1.3.2)(64bit) libstdc++.so.6(CXXABI_1.3.3)(64bit) libstdc++.so.6(CXXABI_1.3.5)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) python(abi) = 3.11 python3.11dist(numpy) python3.11dist(pkgconfig) python3.11dist(pybind11) >= 2.2.4 rtld(GNU_HASH) Obsoletes: python-dolfin < 2019.1.0.post0-34.fc38 Processing files: dolfin-doc-2019.1.0.post0-34.fc38.noarch Provides: dolfin-doc = 2019.1.0.post0-34.fc38 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/bash Processing files: dolfin-debugsource-2019.1.0.post0-34.fc38.x86_64 Provides: dolfin-debugsource = 2019.1.0.post0-34.fc38 dolfin-debugsource(x86-64) = 2019.1.0.post0-34.fc38 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: dolfin-debuginfo-2019.1.0.post0-34.fc38.x86_64 Provides: debuginfo(build-id) = cf63035cc6175489b94b0622711f1e3e896c2833 dolfin-debuginfo = 2019.1.0.post0-34.fc38 dolfin-debuginfo(x86-64) = 2019.1.0.post0-34.fc38 libdolfin.so.2019.1.0-2019.1.0.post0-34.fc38.x86_64.debug()(64bit) Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: dolfin-debugsource(x86-64) = 2019.1.0.post0-34.fc38 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64 Wrote: /builddir/build/RPMS/dolfin-doc-2019.1.0.post0-34.fc38.noarch.rpm Wrote: /builddir/build/RPMS/dolfin-2019.1.0.post0-34.fc38.x86_64.rpm Wrote: /builddir/build/RPMS/dolfin-debugsource-2019.1.0.post0-34.fc38.x86_64.rpm Wrote: /builddir/build/RPMS/python3-dolfin-2019.1.0.post0-34.fc38.x86_64.rpm Wrote: /builddir/build/RPMS/dolfin-devel-2019.1.0.post0-34.fc38.x86_64.rpm Wrote: /builddir/build/RPMS/dolfin-debuginfo-2019.1.0.post0-34.fc38.x86_64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.BTBEqF + umask 022 + cd /builddir/build/BUILD + cd dolfin-2019.1.0.post0 + /usr/bin/rm -rf /builddir/build/BUILDROOT/dolfin-2019.1.0.post0-34.fc38.x86_64 + RPM_EC=0 ++ jobs -p + exit 0 Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.I6u35X + umask 022 + cd /builddir/build/BUILD + rm -rf dolfin-2019.1.0.post0 dolfin-2019.1.0.post0.gemspec + RPM_EC=0 ++ jobs -p + exit 0 Finish: rpmbuild dolfin-2019.1.0.post0-34.fc38.src.rpm Finish: build phase for dolfin-2019.1.0.post0-34.fc38.src.rpm INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-x86_64-1660636830.872585/root/var/log/dnf.rpm.log /var/lib/mock/fedora-rawhide-x86_64-1660636830.872585/root/var/log/dnf.librepo.log /var/lib/mock/fedora-rawhide-x86_64-1660636830.872585/root/var/log/dnf.log INFO: Done(/var/lib/copr-rpmbuild/results/dolfin-2019.1.0.post0-34.fc38.src.rpm) Config(child) 24 minutes 37 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool