libNuML 1.1.1
Library for reading / writing NuML documents
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This is the complete list of members for OntologyTerm, including all inherited members.
accept(NUMLVisitor &v) const | OntologyTerm | virtual |
appendAnnotation(const LIBSBML_CPP_NAMESPACE_QUALIFIER XMLNode *annotation) | NMBase | virtual |
appendAnnotation(const std::string &annotation) | NMBase | virtual |
appendNotes(const LIBSBML_CPP_NAMESPACE_QUALIFIER XMLNode *notes) | NMBase | |
appendNotes(const std::string ¬es) | NMBase | |
checkAnnotation() | NMBase | protected |
checkDefaultNamespace(const LIBSBML_CPP_NAMESPACE_QUALIFIER XMLNamespaces *xmlns, const std::string &elementName) | NMBase | protected |
checkNUMLListPopulated(NMBase *object) | NMBase | protected |
checkOrderAndLogError(NMBase *object, int expected) | NMBase | protected |
checkXHTML(const LIBSBML_CPP_NAMESPACE_QUALIFIER XMLNode *) | NMBase | protected |
clone() const | OntologyTerm | virtual |
ConsistencyValidator | OntologyTerm | friend |
createObject(LIBSBML_CPP_NAMESPACE_QUALIFIER XMLInputStream &stream) | NMBase | protectedvirtual |
getAncestorOfType(NUMLTypeCode_t type) | NMBase | |
getAnnotation() const | NMBase | |
getAnnotationString() const | NMBase | |
getColumn() const | NMBase | |
getElementName() const | OntologyTerm | virtual |
getElementPosition() const | NMBase | protectedvirtual |
getErrorLog() | NMBase | protected |
getHasBeenDeleted() | NMBase | private |
getId() const | OntologyTerm | virtual |
getLevel() const | NMBase | |
getLine() const | NMBase | |
getMetaId() const | NMBase | |
getMetaId() | NMBase | |
getName() const | NMBase | virtual |
getNamespaces() const | NMBase | virtual |
getNotes() const | NMBase | |
getNotesString() const | NMBase | |
getNUMLDocument() const | NMBase | |
getNUMLDocument() | NMBase | |
getNUMLNamespaces() const | NMBase | |
getOntologyURI() const | OntologyTerm | |
getParentNUMLObject() | NMBase | |
getSourceTermId() const | OntologyTerm | |
getTerm() const | OntologyTerm | |
getTypeCode() const | OntologyTerm | virtual |
getVersion() const | NMBase | |
hasRequiredAttributes() const | NMBase | virtual |
hasRequiredElements() const | NMBase | virtual |
hasValidLevelVersionNamespaceCombination() | NMBase | |
IdentifierConsistencyValidator | OntologyTerm | friend |
InternalConsistencyValidator | OntologyTerm | friend |
isSetAnnotation() const | NMBase | |
isSetMetaId() const | NMBase | |
isSetName() const | NMBase | |
isSetNotes() const | NMBase | |
logEmptyString(std::string attribute, const unsigned int level, const unsigned int version, std::string element) | NMBase | protected |
logError(unsigned int id, const unsigned int level=2, const unsigned int version=3, const std::string &details="") | NMBase | protected |
logUnknownAttribute(std::string attribute, const unsigned int level, const unsigned int version, const std::string element) | NMBase | protected |
logUnknownElement(const std::string element, const unsigned int level, const unsigned int version) | NMBase | protected |
mAnnotation | NMBase | protected |
mColumn | NMBase | protected |
mDept | NMBase | protected |
mEmptyString | NMBase | protected |
mHasBeenDeleted | NMBase | protected |
mId | OntologyTerm | protected |
mLine | NMBase | protected |
mMetaId | NMBase | protected |
mName | NMBase | protected |
mNotes | NMBase | protected |
mNUML | NMBase | protected |
mNUMLNamespaces | NMBase | protected |
mOntologyURI | OntologyTerm | protected |
mParentNUMLObject | NMBase | protected |
mSourceTermId | OntologyTerm | protected |
mTerm | OntologyTerm | protected |
NMBase(const std::string &id="", const std::string &name="") | NMBase | protected |
NMBase(unsigned int level, unsigned int version) | NMBase | protected |
NMBase(NUMLNamespaces *numlns) | NMBase | protected |
NMBase(const NMBase &orig) | NMBase | protected |
OntologyTerm(unsigned int level, unsigned int version) | OntologyTerm | |
OntologyTerm(NUMLNamespaces *numlns) | OntologyTerm | |
OntologyTerm() | OntologyTerm | protected |
operator=(const NMBase &orig) | NMBase | |
read(LIBSBML_CPP_NAMESPACE_QUALIFIER XMLInputStream &stream) | NMBase | |
readAnnotation(LIBSBML_CPP_NAMESPACE_QUALIFIER XMLInputStream &stream) | NMBase | private |
readAttributes(const LIBSBML_CPP_NAMESPACE_QUALIFIER XMLAttributes &attributes) | OntologyTerm | virtual |
readNotes(LIBSBML_CPP_NAMESPACE_QUALIFIER XMLInputStream &stream) | NMBase | private |
readOtherXML(LIBSBML_CPP_NAMESPACE_QUALIFIER XMLInputStream &stream) | NMBase | protectedvirtual |
removeTopLevelAnnotationElement(const std::string elementName, const std::string elementURI="") | NMBase | |
replaceTopLevelAnnotationElement(const LIBSBML_CPP_NAMESPACE_QUALIFIER XMLNode *annotation) | NMBase | |
replaceTopLevelAnnotationElement(const std::string &annotation) | NMBase | |
setAnnotation(const LIBSBML_CPP_NAMESPACE_QUALIFIER XMLNode *annotation) | NMBase | virtual |
setAnnotation(const std::string &annotation) | NMBase | virtual |
setId(const std::string &sid) | OntologyTerm | virtual |
setMetaId(const std::string &metaid) | NMBase | |
setNamespaces(LIBSBML_CPP_NAMESPACE_QUALIFIER XMLNamespaces *xmlns) | NMBase | |
setNMBaseFields(const LIBSBML_CPP_NAMESPACE_QUALIFIER XMLToken &element) | NMBase | private |
setNotes(const LIBSBML_CPP_NAMESPACE_QUALIFIER XMLNode *notes) | NMBase | |
setNotes(const std::string ¬es, bool addXHTMLMarkup=false) | NMBase | |
setNUMLDocument(NUMLDocument *d) | NMBase | virtual |
setNUMLNamespaces(NUMLNamespaces *numlns) | NMBase | |
setOntologyURI(const std::string &ontologyURI) | OntologyTerm | |
setParentNUMLObject(NMBase *sb) | NMBase | virtual |
setSourceTermId(const std::string &sourceTermId) | OntologyTerm | |
setTerm(const std::string &term) | OntologyTerm | |
syncAnnotation() | NMBase | |
toNUML() | NMBase | |
unsetAnnotation() | NMBase | |
unsetMetaId() | NMBase | |
unsetNotes() | NMBase | |
Validator | OntologyTerm | friend |
write(LIBSBML_CPP_NAMESPACE_QUALIFIER XMLOutputStream &stream) const | NMBase | |
writeAttributes(LIBSBML_CPP_NAMESPACE_QUALIFIER XMLOutputStream &stream) const | OntologyTerm | virtual |
writeElements(LIBSBML_CPP_NAMESPACE_QUALIFIER XMLOutputStream &stream) const | NMBase | virtual |
writeXMLNS(LIBSBML_CPP_NAMESPACE_QUALIFIER XMLOutputStream &stream) const | NMBase | protectedvirtual |
~NMBase() | NMBase | virtual |
~OntologyTerm() | OntologyTerm | virtual |