libNuML 1.1.1
Library for reading / writing NuML documents
OntologyTerm Member List

This is the complete list of members for OntologyTerm, including all inherited members.

accept(NUMLVisitor &v) constOntologyTermvirtual
appendAnnotation(const LIBSBML_CPP_NAMESPACE_QUALIFIER XMLNode *annotation)NMBasevirtual
appendAnnotation(const std::string &annotation)NMBasevirtual
appendNotes(const LIBSBML_CPP_NAMESPACE_QUALIFIER XMLNode *notes)NMBase
appendNotes(const std::string &notes)NMBase
checkAnnotation()NMBaseprotected
checkDefaultNamespace(const LIBSBML_CPP_NAMESPACE_QUALIFIER XMLNamespaces *xmlns, const std::string &elementName)NMBaseprotected
checkNUMLListPopulated(NMBase *object)NMBaseprotected
checkOrderAndLogError(NMBase *object, int expected)NMBaseprotected
checkXHTML(const LIBSBML_CPP_NAMESPACE_QUALIFIER XMLNode *)NMBaseprotected
clone() constOntologyTermvirtual
ConsistencyValidatorOntologyTermfriend
createObject(LIBSBML_CPP_NAMESPACE_QUALIFIER XMLInputStream &stream)NMBaseprotectedvirtual
getAncestorOfType(NUMLTypeCode_t type)NMBase
getAnnotation() constNMBase
getAnnotationString() constNMBase
getColumn() constNMBase
getElementName() constOntologyTermvirtual
getElementPosition() constNMBaseprotectedvirtual
getErrorLog()NMBaseprotected
getHasBeenDeleted()NMBaseprivate
getId() constOntologyTermvirtual
getLevel() constNMBase
getLine() constNMBase
getMetaId() constNMBase
getMetaId()NMBase
getName() constNMBasevirtual
getNamespaces() constNMBasevirtual
getNotes() constNMBase
getNotesString() constNMBase
getNUMLDocument() constNMBase
getNUMLDocument()NMBase
getNUMLNamespaces() constNMBase
getOntologyURI() constOntologyTerm
getParentNUMLObject()NMBase
getSourceTermId() constOntologyTerm
getTerm() constOntologyTerm
getTypeCode() constOntologyTermvirtual
getVersion() constNMBase
hasRequiredAttributes() constNMBasevirtual
hasRequiredElements() constNMBasevirtual
hasValidLevelVersionNamespaceCombination()NMBase
IdentifierConsistencyValidatorOntologyTermfriend
InternalConsistencyValidatorOntologyTermfriend
isSetAnnotation() constNMBase
isSetMetaId() constNMBase
isSetName() constNMBase
isSetNotes() constNMBase
logEmptyString(std::string attribute, const unsigned int level, const unsigned int version, std::string element)NMBaseprotected
logError(unsigned int id, const unsigned int level=2, const unsigned int version=3, const std::string &details="")NMBaseprotected
logUnknownAttribute(std::string attribute, const unsigned int level, const unsigned int version, const std::string element)NMBaseprotected
logUnknownElement(const std::string element, const unsigned int level, const unsigned int version)NMBaseprotected
mAnnotationNMBaseprotected
mColumnNMBaseprotected
mDeptNMBaseprotected
mEmptyStringNMBaseprotected
mHasBeenDeletedNMBaseprotected
mIdOntologyTermprotected
mLineNMBaseprotected
mMetaIdNMBaseprotected
mNameNMBaseprotected
mNotesNMBaseprotected
mNUMLNMBaseprotected
mNUMLNamespacesNMBaseprotected
mOntologyURIOntologyTermprotected
mParentNUMLObjectNMBaseprotected
mSourceTermIdOntologyTermprotected
mTermOntologyTermprotected
NMBase(const std::string &id="", const std::string &name="")NMBaseprotected
NMBase(unsigned int level, unsigned int version)NMBaseprotected
NMBase(NUMLNamespaces *numlns)NMBaseprotected
NMBase(const NMBase &orig)NMBaseprotected
OntologyTerm(unsigned int level, unsigned int version)OntologyTerm
OntologyTerm(NUMLNamespaces *numlns)OntologyTerm
OntologyTerm()OntologyTermprotected
operator=(const NMBase &orig)NMBase
read(LIBSBML_CPP_NAMESPACE_QUALIFIER XMLInputStream &stream)NMBase
readAnnotation(LIBSBML_CPP_NAMESPACE_QUALIFIER XMLInputStream &stream)NMBaseprivate
readAttributes(const LIBSBML_CPP_NAMESPACE_QUALIFIER XMLAttributes &attributes)OntologyTermvirtual
readNotes(LIBSBML_CPP_NAMESPACE_QUALIFIER XMLInputStream &stream)NMBaseprivate
readOtherXML(LIBSBML_CPP_NAMESPACE_QUALIFIER XMLInputStream &stream)NMBaseprotectedvirtual
removeTopLevelAnnotationElement(const std::string elementName, const std::string elementURI="")NMBase
replaceTopLevelAnnotationElement(const LIBSBML_CPP_NAMESPACE_QUALIFIER XMLNode *annotation)NMBase
replaceTopLevelAnnotationElement(const std::string &annotation)NMBase
setAnnotation(const LIBSBML_CPP_NAMESPACE_QUALIFIER XMLNode *annotation)NMBasevirtual
setAnnotation(const std::string &annotation)NMBasevirtual
setId(const std::string &sid)OntologyTermvirtual
setMetaId(const std::string &metaid)NMBase
setNamespaces(LIBSBML_CPP_NAMESPACE_QUALIFIER XMLNamespaces *xmlns)NMBase
setNMBaseFields(const LIBSBML_CPP_NAMESPACE_QUALIFIER XMLToken &element)NMBaseprivate
setNotes(const LIBSBML_CPP_NAMESPACE_QUALIFIER XMLNode *notes)NMBase
setNotes(const std::string &notes, bool addXHTMLMarkup=false)NMBase
setNUMLDocument(NUMLDocument *d)NMBasevirtual
setNUMLNamespaces(NUMLNamespaces *numlns)NMBase
setOntologyURI(const std::string &ontologyURI)OntologyTerm
setParentNUMLObject(NMBase *sb)NMBasevirtual
setSourceTermId(const std::string &sourceTermId)OntologyTerm
setTerm(const std::string &term)OntologyTerm
syncAnnotation()NMBase
toNUML()NMBase
unsetAnnotation()NMBase
unsetMetaId()NMBase
unsetNotes()NMBase
ValidatorOntologyTermfriend
write(LIBSBML_CPP_NAMESPACE_QUALIFIER XMLOutputStream &stream) constNMBase
writeAttributes(LIBSBML_CPP_NAMESPACE_QUALIFIER XMLOutputStream &stream) constOntologyTermvirtual
writeElements(LIBSBML_CPP_NAMESPACE_QUALIFIER XMLOutputStream &stream) constNMBasevirtual
writeXMLNS(LIBSBML_CPP_NAMESPACE_QUALIFIER XMLOutputStream &stream) constNMBaseprotectedvirtual
~NMBase()NMBasevirtual
~OntologyTerm()OntologyTermvirtual