Warning: Permanently added '54.152.198.208' (ED25519) to the list of known hosts.
Running: /usr/bin/copr-rpmbuild --verbose --drop-resultdir --build-id 4718362 --chroot fedora-rawhide-x86_64 --detached
Version: 0.61
PID: 16287
Logging PID: 16288
Task:
{'appstream': False,
'background': True,
'build_id': 4718362,
'buildroot_pkgs': [],
'chroot': 'fedora-rawhide-x86_64',
'enable_net': True,
'fedora_review': False,
'git_hash': '5758279a19662799ea6021a48d33dee1010b77f9',
'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/thrnciar/mpb.7/bionetgen',
'isolation': 'default',
'memory_reqs': 2048,
'package_name': 'bionetgen',
'package_version': '2.8.4-1',
'project_dirname': 'mpb.7',
'project_name': 'mpb.7',
'project_owner': 'thrnciar',
'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/thrnciar/mpb.7/fedora-rawhide-x86_64/',
'id': 'copr_base',
'name': 'Copr repository'}],
'sandbox': 'thrnciar/mpb.7--thrnciar',
'source_json': {},
'source_type': None,
'submitter': 'thrnciar',
'tags': [],
'task_id': '4718362-fedora-rawhide-x86_64',
'timeout': 108000,
'uses_devel_repo': False,
'with_opts': [],
'without_opts': []}
Running: git clone https://copr-dist-git.fedorainfracloud.org/git/thrnciar/mpb.7/bionetgen /var/lib/copr-rpmbuild/workspace/workdir-2p2vbtav/bionetgen --depth 500 --no-single-branch --recursive
cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/thrnciar/mpb.7/bionetgen', '/var/lib/copr-rpmbuild/workspace/workdir-2p2vbtav/bionetgen', '--depth', '500', '--no-single-branch', '--recursive']
cwd: .
rc: 0
stdout:
stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-2p2vbtav/bionetgen'...
Running: git checkout 5758279a19662799ea6021a48d33dee1010b77f9
cmd: ['git', 'checkout', '5758279a19662799ea6021a48d33dee1010b77f9']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-2p2vbtav/bionetgen
rc: 0
stdout:
stderr: Note: switching to '5758279a19662799ea6021a48d33dee1010b77f9'.
You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by switching back to a branch.
If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -c with the switch command. Example:
git switch -c <new-branch-name>
Or undo this operation with:
git switch -
Turn off this advice by setting config variable advice.detachedHead to false
HEAD is now at 5758279 automatic import of bionetgen
Running: copr-distgit-client sources
cmd: ['copr-distgit-client', 'sources']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-2p2vbtav/bionetgen
rc: 0
stdout:
/usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated
stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD
INFO: Reading stdout from command: git rev-parse HEAD
INFO: Reading sources specification file: sources
INFO: Downloading bionetgen-BioNetGen-2.8.4.tar.gz
INFO: Calling: curl -H Pragma: -o bionetgen-BioNetGen-2.8.4.tar.gz --location --remote-time --show-error --fail https://copr-dist-git.fedorainfracloud.org/repo/pkgs/thrnciar/mpb.7/bionetgen/bionetgen-BioNetGen-2.8.4.tar.gz/md5/e26ad465557b02afad362a856dc9135d/bionetgen-BioNetGen-2.8.4.tar.gz
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
100 40.0M 100 40.0M 0 0 27.9M 0 0:00:01 0:00:01 --:--:-- 28.0M
INFO: Reading stdout from command: md5sum bionetgen-BioNetGen-2.8.4.tar.gz
Running (timeout=108000): unbuffer mock --buildsrpm --spec /var/lib/copr-rpmbuild/workspace/workdir-2p2vbtav/bionetgen/bionetgen.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-2p2vbtav/bionetgen --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1660140575.154331 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
INFO: mock.py version 3.1 starting (python version = 3.10.4, NVR = mock-3.1-1.fc35)...
Start(bootstrap): init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish(bootstrap): init plugins
Start: init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish: init plugins
INFO: Signal handler active
Start: run
INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-2p2vbtav/bionetgen/bionetgen.spec) Config(fedora-rawhide-x86_64)
Start: clean chroot
Finish: clean chroot
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1660140575.154331/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
INFO: enabled HW Info plugin
Mock Version: 3.1
INFO: Mock Version: 3.1
Start(bootstrap): dnf install
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Updating Subscription Management repositories.
Unable to read consumer identity
This system is not registered with an entitlement server. You can use subscription-manager to register.
Copr repository 12 MB/s | 1.7 MB 00:00
fedora 24 MB/s | 65 MB 00:02
Dependencies resolved.
================================================================================
Package Arch Version Repo Size
================================================================================
Installing:
dnf noarch 4.13.0-3.fc37 fedora 464 k
dnf-plugins-core noarch 4.2.1-3.fc37 fedora 34 k
Installing dependencies:
alternatives x86_64 1.19-3.fc37 fedora 36 k
audit-libs x86_64 3.0.8-3.fc37 fedora 116 k
basesystem noarch 11-14.fc37 fedora 7.0 k
bash x86_64 5.1.16-3.fc37 copr_base 1.7 M
bzip2-libs x86_64 1.0.8-12.fc37 fedora 41 k
ca-certificates noarch 2022.2.54-5.fc37 fedora 829 k
coreutils x86_64 9.1-6.fc37 copr_base 1.1 M
coreutils-common x86_64 9.1-6.fc37 copr_base 2.0 M
crypto-policies noarch 20220802-1.gita99dfd2.fc37 fedora 86 k
curl x86_64 7.84.0-2.fc37 fedora 313 k
cyrus-sasl-lib x86_64 2.1.28-7.fc37 fedora 792 k
dbus-libs x86_64 1:1.14.0-3.fc37 fedora 155 k
dnf-data noarch 4.13.0-3.fc37 fedora 42 k
elfutils-default-yama-scope noarch 0.187-7.fc37 copr_base 17 k
elfutils-libelf x86_64 0.187-7.fc37 copr_base 198 k
elfutils-libs x86_64 0.187-7.fc37 copr_base 257 k
expat x86_64 2.4.8-2.fc37 fedora 110 k
fedora-gpg-keys noarch 37-0.3 fedora 114 k
fedora-release noarch 37-0.9 fedora 11 k
fedora-release-common noarch 37-0.9 fedora 22 k
fedora-release-identity-basic
noarch 37-0.9 fedora 12 k
fedora-repos noarch 37-0.3 fedora 10 k
fedora-repos-rawhide noarch 37-0.3 fedora 9.8 k
file-libs x86_64 5.42-4.fc37 fedora 676 k
filesystem x86_64 3.18-1.fc37 fedora 1.1 M
findutils x86_64 1:4.9.0-2.fc37 fedora 492 k
gawk x86_64 5.1.1-4.fc37 fedora 1.0 M
gdbm-libs x86_64 1:1.23-2.fc37 fedora 56 k
glib2 x86_64 2.73.2-7.fc37 fedora 2.7 M
glibc x86_64 2.36-1.fc37 fedora 2.1 M
glibc-common x86_64 2.36-1.fc37 fedora 359 k
glibc-minimal-langpack x86_64 2.36-1.fc37 fedora 81 k
gmp x86_64 1:6.2.1-3.fc37 fedora 315 k
gnupg2 x86_64 2.3.7-3.fc37 fedora 2.5 M
gnutls x86_64 3.7.7-1.fc37 fedora 1.1 M
gpgme x86_64 1.17.0-4.fc37 fedora 210 k
grep x86_64 3.7-4.fc37 copr_base 263 k
ima-evm-utils x86_64 1.4-6.fc37 fedora 63 k
json-c x86_64 0.16-2.fc37 fedora 41 k
keyutils-libs x86_64 1.6.1-5.fc37 fedora 31 k
krb5-libs x86_64 1.19.2-11.fc37.1 fedora 727 k
libacl x86_64 2.3.1-4.fc37 fedora 23 k
libarchive x86_64 3.6.1-2.fc37 fedora 397 k
libassuan x86_64 2.5.5-5.fc37 fedora 67 k
libattr x86_64 2.5.1-5.fc37 fedora 18 k
libb2 x86_64 0.98.1-7.fc37 fedora 25 k
libblkid x86_64 2.38.1-1.fc37 fedora 107 k
libbrotli x86_64 1.0.9-9.fc37 fedora 315 k
libcap x86_64 2.48-5.fc37 fedora 67 k
libcap-ng x86_64 0.8.3-3.fc37 fedora 33 k
libcom_err x86_64 1.46.5-3.fc37 fedora 25 k
libcomps x86_64 0.1.18-4.fc37 fedora 76 k
libcurl x86_64 7.84.0-2.fc37 fedora 306 k
libdnf x86_64 0.67.0-4.fc37 fedora 672 k
libevent x86_64 2.1.12-7.fc37 fedora 261 k
libffi x86_64 3.4.2-9.fc37 fedora 37 k
libfsverity x86_64 1.4-8.fc37 fedora 19 k
libgcc x86_64 12.1.1-3.fc37.1 fedora 105 k
libgcrypt x86_64 1.10.1-4.fc37 fedora 512 k
libgomp x86_64 12.1.1-3.fc37.1 fedora 292 k
libgpg-error x86_64 1.45-2.fc37 fedora 227 k
libidn2 x86_64 2.3.3-2.fc37 fedora 113 k
libksba x86_64 1.6.0-4.fc37 fedora 157 k
libmodulemd x86_64 2.14.0-4.fc37 fedora 234 k
libmount x86_64 2.38.1-1.fc37 fedora 135 k
libnghttp2 x86_64 1.48.0-2.fc37 fedora 75 k
libnsl2 x86_64 2.0.0-4.fc37 fedora 30 k
libpsl x86_64 0.21.1-6.fc37 fedora 63 k
librepo x86_64 1.14.3-3.fc37 fedora 94 k
libreport-filesystem noarch 2.17.1-3.fc37 fedora 14 k
libselinux x86_64 3.4-5.fc37 fedora 86 k
libsemanage x86_64 3.4-5.fc37 fedora 120 k
libsepol x86_64 3.4-3.fc37 fedora 322 k
libsigsegv x86_64 2.14-3.fc37 fedora 27 k
libsmartcols x86_64 2.38.1-1.fc37 fedora 64 k
libsolv x86_64 0.7.22-3.fc37 fedora 405 k
libssh x86_64 0.9.6-5.fc37 fedora 203 k
libssh-config noarch 0.9.6-5.fc37 fedora 7.8 k
libstdc++ x86_64 12.1.1-3.fc37.1 fedora 797 k
libtasn1 x86_64 4.18.0-3.fc37 fedora 75 k
libtirpc x86_64 1.3.2-1.rc5.fc37 fedora 93 k
libunistring x86_64 1.0-2.fc37 fedora 549 k
libuuid x86_64 2.38.1-1.fc37 fedora 28 k
libverto x86_64 0.3.2-4.fc37 fedora 21 k
libxcrypt x86_64 4.4.28-2.fc37 fedora 118 k
libxml2 x86_64 2.9.14-3.fc37 fedora 752 k
libyaml x86_64 0.2.5-8.fc37 fedora 60 k
libzstd x86_64 1.5.2-3.fc37 fedora 294 k
lua-libs x86_64 5.4.4-4.fc37 fedora 217 k
lz4-libs x86_64 1.9.3-5.fc37 fedora 70 k
mpdecimal x86_64 2.5.1-4.fc37 fedora 102 k
mpfr x86_64 4.1.0-10.fc37 fedora 331 k
ncurses-base noarch 6.3-3.20220501.fc37 fedora 86 k
ncurses-libs x86_64 6.3-3.20220501.fc37 fedora 329 k
nettle x86_64 3.8-2.fc37 fedora 414 k
npth x86_64 1.6-9.fc37 fedora 24 k
openldap x86_64 2.6.2-4.fc37 fedora 254 k
openssl-libs x86_64 1:3.0.5-2.fc37 fedora 2.1 M
p11-kit x86_64 0.24.1-3.fc37 fedora 376 k
p11-kit-trust x86_64 0.24.1-3.fc37 fedora 138 k
pcre x86_64 8.45-1.fc37.2 fedora 202 k
pcre2 x86_64 10.40-1.fc37.1 fedora 236 k
pcre2-syntax noarch 10.40-1.fc37.1 fedora 142 k
popt x86_64 1.19~rc1-3.fc37 fedora 65 k
publicsuffix-list-dafsa noarch 20210518-5.fc37 fedora 58 k
python-pip-wheel noarch 22.2-1.fc37 fedora 1.4 M
python-setuptools-wheel noarch 62.6.0-2.fc37 fedora 712 k
python3 x86_64 3.11.0~b5-1.fc37 fedora 27 k
python3-dateutil noarch 1:2.8.2-4.fc37 fedora 361 k
python3-dbus x86_64 1.2.18-5.fc37 fedora 156 k
python3-distro noarch 1.7.0-3.fc37 fedora 48 k
python3-dnf noarch 4.13.0-3.fc37 fedora 605 k
python3-dnf-plugins-core noarch 4.2.1-3.fc37 fedora 268 k
python3-gpg x86_64 1.17.0-4.fc37 fedora 298 k
python3-hawkey x86_64 0.67.0-4.fc37 fedora 108 k
python3-libcomps x86_64 0.1.18-4.fc37 fedora 48 k
python3-libdnf x86_64 0.67.0-4.fc37 fedora 818 k
python3-libs x86_64 3.11.0~b5-1.fc37 fedora 9.6 M
python3-rpm x86_64 4.18.0-0.beta1.4.fc37 fedora 93 k
python3-six noarch 1.16.0-8.fc37 fedora 42 k
readline x86_64 8.1-7.fc37 fedora 211 k
rpm x86_64 4.18.0-0.beta1.4.fc37 fedora 570 k
rpm-build-libs x86_64 4.18.0-0.beta1.4.fc37 fedora 93 k
rpm-libs x86_64 4.18.0-0.beta1.4.fc37 fedora 319 k
rpm-sign-libs x86_64 4.18.0-0.beta1.4.fc37 fedora 26 k
sed x86_64 4.8-11.fc37 copr_base 297 k
setup noarch 2.14.1-2.fc37 fedora 149 k
shadow-utils x86_64 2:4.11.1-4.fc37 fedora 1.1 M
sqlite-libs x86_64 3.39.2-2.fc37 copr_base 657 k
systemd-libs x86_64 251.3-2.fc37 fedora 620 k
tpm2-tss x86_64 3.2.0-3.fc37 fedora 600 k
tzdata noarch 2022a-4.fc37 fedora 719 k
xz-libs x86_64 5.2.5-10.fc37 fedora 92 k
zchunk-libs x86_64 1.2.2-2.fc37 fedora 51 k
zlib x86_64 1.2.12-4.fc37 fedora 94 k
Transaction Summary
================================================================================
Install 137 Packages
Total download size: 56 M
Installed size: 195 M
Downloading Packages:
(1/137): bash-5.1.16-3.fc37.x86_64.rpm 40 MB/s | 1.7 MB 00:00
(2/137): elfutils-default-yama-scope-0.187-7.fc 4.0 MB/s | 17 kB 00:00
(3/137): coreutils-9.1-6.fc37.x86_64.rpm 18 MB/s | 1.1 MB 00:00
(4/137): elfutils-libelf-0.187-7.fc37.x86_64.rp 15 MB/s | 198 kB 00:00
(5/137): coreutils-common-9.1-6.fc37.x86_64.rpm 28 MB/s | 2.0 MB 00:00
(6/137): elfutils-libs-0.187-7.fc37.x86_64.rpm 23 MB/s | 257 kB 00:00
(7/137): grep-3.7-4.fc37.x86_64.rpm 15 MB/s | 263 kB 00:00
(8/137): sqlite-libs-3.39.2-2.fc37.x86_64.rpm 49 MB/s | 657 kB 00:00
(9/137): sed-4.8-11.fc37.x86_64.rpm 8.9 MB/s | 297 kB 00:00
(10/137): alternatives-1.19-3.fc37.x86_64.rpm 1.3 MB/s | 36 kB 00:00
(11/137): bzip2-libs-1.0.8-12.fc37.x86_64.rpm 7.7 MB/s | 41 kB 00:00
(12/137): basesystem-11-14.fc37.noarch.rpm 838 kB/s | 7.0 kB 00:00
(13/137): audit-libs-3.0.8-3.fc37.x86_64.rpm 5.4 MB/s | 116 kB 00:00
(14/137): crypto-policies-20220802-1.gita99dfd2 6.7 MB/s | 86 kB 00:00
(15/137): curl-7.84.0-2.fc37.x86_64.rpm 16 MB/s | 313 kB 00:00
(16/137): dbus-libs-1.14.0-3.fc37.x86_64.rpm 18 MB/s | 155 kB 00:00
(17/137): cyrus-sasl-lib-2.1.28-7.fc37.x86_64.r 24 MB/s | 792 kB 00:00
(18/137): ca-certificates-2022.2.54-5.fc37.noar 15 MB/s | 829 kB 00:00
(19/137): dnf-4.13.0-3.fc37.noarch.rpm 20 MB/s | 464 kB 00:00
(20/137): dnf-data-4.13.0-3.fc37.noarch.rpm 5.5 MB/s | 42 kB 00:00
(21/137): dnf-plugins-core-4.2.1-3.fc37.noarch. 6.5 MB/s | 34 kB 00:00
(22/137): fedora-release-37-0.9.noarch.rpm 3.9 MB/s | 11 kB 00:00
(23/137): expat-2.4.8-2.fc37.x86_64.rpm 14 MB/s | 110 kB 00:00
(24/137): fedora-gpg-keys-37-0.3.noarch.rpm 14 MB/s | 114 kB 00:00
(25/137): fedora-release-common-37-0.9.noarch.r 6.1 MB/s | 22 kB 00:00
(26/137): fedora-release-identity-basic-37-0.9. 3.6 MB/s | 12 kB 00:00
(27/137): fedora-repos-37-0.3.noarch.rpm 3.9 MB/s | 10 kB 00:00
(28/137): fedora-repos-rawhide-37-0.3.noarch.rp 3.4 MB/s | 9.8 kB 00:00
(29/137): findutils-4.9.0-2.fc37.x86_64.rpm 33 MB/s | 492 kB 00:00
(30/137): file-libs-5.42-4.fc37.x86_64.rpm 18 MB/s | 676 kB 00:00
(31/137): gdbm-libs-1.23-2.fc37.x86_64.rpm 9.1 MB/s | 56 kB 00:00
(32/137): filesystem-3.18-1.fc37.x86_64.rpm 22 MB/s | 1.1 MB 00:00
(33/137): gawk-5.1.1-4.fc37.x86_64.rpm 26 MB/s | 1.0 MB 00:00
(34/137): glibc-common-2.36-1.fc37.x86_64.rpm 31 MB/s | 359 kB 00:00
(35/137): glibc-minimal-langpack-2.36-1.fc37.x8 12 MB/s | 81 kB 00:00
(36/137): gmp-6.2.1-3.fc37.x86_64.rpm 25 MB/s | 315 kB 00:00
(37/137): glibc-2.36-1.fc37.x86_64.rpm 36 MB/s | 2.1 MB 00:00
(38/137): glib2-2.73.2-7.fc37.x86_64.rpm 32 MB/s | 2.7 MB 00:00
(39/137): gnutls-3.7.7-1.fc37.x86_64.rpm 52 MB/s | 1.1 MB 00:00
(40/137): gpgme-1.17.0-4.fc37.x86_64.rpm 20 MB/s | 210 kB 00:00
(41/137): ima-evm-utils-1.4-6.fc37.x86_64.rpm 9.7 MB/s | 63 kB 00:00
(42/137): json-c-0.16-2.fc37.x86_64.rpm 6.1 MB/s | 41 kB 00:00
(43/137): keyutils-libs-1.6.1-5.fc37.x86_64.rpm 6.8 MB/s | 31 kB 00:00
(44/137): gnupg2-2.3.7-3.fc37.x86_64.rpm 34 MB/s | 2.5 MB 00:00
(45/137): libacl-2.3.1-4.fc37.x86_64.rpm 1.6 MB/s | 23 kB 00:00
(46/137): krb5-libs-1.19.2-11.fc37.1.x86_64.rpm 31 MB/s | 727 kB 00:00
(47/137): libarchive-3.6.1-2.fc37.x86_64.rpm 34 MB/s | 397 kB 00:00
(48/137): libassuan-2.5.5-5.fc37.x86_64.rpm 6.3 MB/s | 67 kB 00:00
(49/137): libattr-2.5.1-5.fc37.x86_64.rpm 3.8 MB/s | 18 kB 00:00
(50/137): libb2-0.98.1-7.fc37.x86_64.rpm 6.8 MB/s | 25 kB 00:00
(51/137): libblkid-2.38.1-1.fc37.x86_64.rpm 19 MB/s | 107 kB 00:00
(52/137): libcap-2.48-5.fc37.x86_64.rpm 14 MB/s | 67 kB 00:00
(53/137): libbrotli-1.0.9-9.fc37.x86_64.rpm 32 MB/s | 315 kB 00:00
(54/137): libcap-ng-0.8.3-3.fc37.x86_64.rpm 5.6 MB/s | 33 kB 00:00
(55/137): libcom_err-1.46.5-3.fc37.x86_64.rpm 6.5 MB/s | 25 kB 00:00
(56/137): libcomps-0.1.18-4.fc37.x86_64.rpm 9.8 MB/s | 76 kB 00:00
(57/137): libcurl-7.84.0-2.fc37.x86_64.rpm 23 MB/s | 306 kB 00:00
(58/137): libdnf-0.67.0-4.fc37.x86_64.rpm 30 MB/s | 672 kB 00:00
(59/137): libevent-2.1.12-7.fc37.x86_64.rpm 14 MB/s | 261 kB 00:00
(60/137): libffi-3.4.2-9.fc37.x86_64.rpm 3.0 MB/s | 37 kB 00:00
(61/137): libfsverity-1.4-8.fc37.x86_64.rpm 4.5 MB/s | 19 kB 00:00
(62/137): libgcc-12.1.1-3.fc37.1.x86_64.rpm 18 MB/s | 105 kB 00:00
(63/137): libgpg-error-1.45-2.fc37.x86_64.rpm 29 MB/s | 227 kB 00:00
(64/137): libgomp-12.1.1-3.fc37.1.x86_64.rpm 14 MB/s | 292 kB 00:00
(65/137): libidn2-2.3.3-2.fc37.x86_64.rpm 13 MB/s | 113 kB 00:00
(66/137): libksba-1.6.0-4.fc37.x86_64.rpm 22 MB/s | 157 kB 00:00
(67/137): libmodulemd-2.14.0-4.fc37.x86_64.rpm 29 MB/s | 234 kB 00:00
(68/137): libgcrypt-1.10.1-4.fc37.x86_64.rpm 14 MB/s | 512 kB 00:00
(69/137): libmount-2.38.1-1.fc37.x86_64.rpm 19 MB/s | 135 kB 00:00
(70/137): libnghttp2-1.48.0-2.fc37.x86_64.rpm 12 MB/s | 75 kB 00:00
(71/137): libnsl2-2.0.0-4.fc37.x86_64.rpm 7.9 MB/s | 30 kB 00:00
(72/137): libpsl-0.21.1-6.fc37.x86_64.rpm 16 MB/s | 63 kB 00:00
(73/137): libreport-filesystem-2.17.1-3.fc37.no 3.3 MB/s | 14 kB 00:00
(74/137): librepo-1.14.3-3.fc37.x86_64.rpm 14 MB/s | 94 kB 00:00
(75/137): libsemanage-3.4-5.fc37.x86_64.rpm 23 MB/s | 120 kB 00:00
(76/137): libselinux-3.4-5.fc37.x86_64.rpm 7.7 MB/s | 86 kB 00:00
(77/137): libsepol-3.4-3.fc37.x86_64.rpm 29 MB/s | 322 kB 00:00
(78/137): libsigsegv-2.14-3.fc37.x86_64.rpm 3.3 MB/s | 27 kB 00:00
(79/137): libsmartcols-2.38.1-1.fc37.x86_64.rpm 14 MB/s | 64 kB 00:00
(80/137): libssh-config-0.9.6-5.fc37.noarch.rpm 835 kB/s | 7.8 kB 00:00
(81/137): libsolv-0.7.22-3.fc37.x86_64.rpm 25 MB/s | 405 kB 00:00
(82/137): libssh-0.9.6-5.fc37.x86_64.rpm 11 MB/s | 203 kB 00:00
(83/137): libtasn1-4.18.0-3.fc37.x86_64.rpm 13 MB/s | 75 kB 00:00
(84/137): libtirpc-1.3.2-1.rc5.fc37.x86_64.rpm 21 MB/s | 93 kB 00:00
(85/137): libstdc++-12.1.1-3.fc37.1.x86_64.rpm 42 MB/s | 797 kB 00:00
(86/137): libuuid-2.38.1-1.fc37.x86_64.rpm 3.9 MB/s | 28 kB 00:00
(87/137): libunistring-1.0-2.fc37.x86_64.rpm 28 MB/s | 549 kB 00:00
(88/137): libxcrypt-4.4.28-2.fc37.x86_64.rpm 13 MB/s | 118 kB 00:00
(89/137): libverto-0.3.2-4.fc37.x86_64.rpm 1.8 MB/s | 21 kB 00:00
(90/137): libxml2-2.9.14-3.fc37.x86_64.rpm 37 MB/s | 752 kB 00:00
(91/137): libyaml-0.2.5-8.fc37.x86_64.rpm 2.9 MB/s | 60 kB 00:00
(92/137): libzstd-1.5.2-3.fc37.x86_64.rpm 14 MB/s | 294 kB 00:00
(93/137): lua-libs-5.4.4-4.fc37.x86_64.rpm 29 MB/s | 217 kB 00:00
(94/137): lz4-libs-1.9.3-5.fc37.x86_64.rpm 12 MB/s | 70 kB 00:00
(95/137): mpdecimal-2.5.1-4.fc37.x86_64.rpm 11 MB/s | 102 kB 00:00
(96/137): ncurses-base-6.3-3.20220501.fc37.noar 14 MB/s | 86 kB 00:00
(97/137): mpfr-4.1.0-10.fc37.x86_64.rpm 31 MB/s | 331 kB 00:00
(98/137): ncurses-libs-6.3-3.20220501.fc37.x86_ 27 MB/s | 329 kB 00:00
(99/137): npth-1.6-9.fc37.x86_64.rpm 2.6 MB/s | 24 kB 00:00
(100/137): nettle-3.8-2.fc37.x86_64.rpm 28 MB/s | 414 kB 00:00
(101/137): openldap-2.6.2-4.fc37.x86_64.rpm 28 MB/s | 254 kB 00:00
(102/137): p11-kit-trust-0.24.1-3.fc37.x86_64.r 17 MB/s | 138 kB 00:00
(103/137): p11-kit-0.24.1-3.fc37.x86_64.rpm 27 MB/s | 376 kB 00:00
(104/137): pcre-8.45-1.fc37.2.x86_64.rpm 25 MB/s | 202 kB 00:00
(105/137): pcre2-10.40-1.fc37.1.x86_64.rpm 20 MB/s | 236 kB 00:00
(106/137): pcre2-syntax-10.40-1.fc37.1.noarch.r 20 MB/s | 142 kB 00:00
(107/137): popt-1.19~rc1-3.fc37.x86_64.rpm 14 MB/s | 65 kB 00:00
(108/137): publicsuffix-list-dafsa-20210518-5.f 7.3 MB/s | 58 kB 00:00
(109/137): openssl-libs-3.0.5-2.fc37.x86_64.rpm 40 MB/s | 2.1 MB 00:00
(110/137): python-setuptools-wheel-62.6.0-2.fc3 36 MB/s | 712 kB 00:00
(111/137): python3-3.11.0~b5-1.fc37.x86_64.rpm 4.3 MB/s | 27 kB 00:00
(112/137): python3-dbus-1.2.18-5.fc37.x86_64.rp 19 MB/s | 156 kB 00:00
(113/137): python3-dateutil-2.8.2-4.fc37.noarch 28 MB/s | 361 kB 00:00
(114/137): python-pip-wheel-22.2-1.fc37.noarch. 31 MB/s | 1.4 MB 00:00
(115/137): python3-distro-1.7.0-3.fc37.noarch.r 4.1 MB/s | 48 kB 00:00
(116/137): python3-dnf-4.13.0-3.fc37.noarch.rpm 37 MB/s | 605 kB 00:00
(117/137): python3-dnf-plugins-core-4.2.1-3.fc3 23 MB/s | 268 kB 00:00
(118/137): python3-gpg-1.17.0-4.fc37.x86_64.rpm 21 MB/s | 298 kB 00:00
(119/137): python3-hawkey-0.67.0-4.fc37.x86_64. 16 MB/s | 108 kB 00:00
(120/137): python3-libcomps-0.1.18-4.fc37.x86_6 9.4 MB/s | 48 kB 00:00
(121/137): python3-rpm-4.18.0-0.beta1.4.fc37.x8 12 MB/s | 93 kB 00:00
(122/137): python3-six-1.16.0-8.fc37.noarch.rpm 10 MB/s | 42 kB 00:00
(123/137): readline-8.1-7.fc37.x86_64.rpm 27 MB/s | 211 kB 00:00
(124/137): python3-libdnf-0.67.0-4.fc37.x86_64. 25 MB/s | 818 kB 00:00
(125/137): rpm-build-libs-4.18.0-0.beta1.4.fc37 13 MB/s | 93 kB 00:00
(126/137): rpm-4.18.0-0.beta1.4.fc37.x86_64.rpm 31 MB/s | 570 kB 00:00
(127/137): rpm-libs-4.18.0-0.beta1.4.fc37.x86_6 29 MB/s | 319 kB 00:00
(128/137): rpm-sign-libs-4.18.0-0.beta1.4.fc37. 3.3 MB/s | 26 kB 00:00
(129/137): setup-2.14.1-2.fc37.noarch.rpm 12 MB/s | 149 kB 00:00
(130/137): shadow-utils-4.11.1-4.fc37.x86_64.rp 26 MB/s | 1.1 MB 00:00
(131/137): systemd-libs-251.3-2.fc37.x86_64.rpm 17 MB/s | 620 kB 00:00
(132/137): tpm2-tss-3.2.0-3.fc37.x86_64.rpm 39 MB/s | 600 kB 00:00
(133/137): tzdata-2022a-4.fc37.noarch.rpm 36 MB/s | 719 kB 00:00
(134/137): xz-libs-5.2.5-10.fc37.x86_64.rpm 8.2 MB/s | 92 kB 00:00
(135/137): zchunk-libs-1.2.2-2.fc37.x86_64.rpm 9.0 MB/s | 51 kB 00:00
(136/137): zlib-1.2.12-4.fc37.x86_64.rpm 12 MB/s | 94 kB 00:00
(137/137): python3-libs-3.11.0~b5-1.fc37.x86_64 43 MB/s | 9.6 MB 00:00
--------------------------------------------------------------------------------
Total 57 MB/s | 56 MB 00:00
fedora 1.6 MB/s | 1.6 kB 00:00
Importing GPG key 0x5323552A:
Userid : "Fedora (37) <fedora-37-primary@fedoraproject.org>"
Fingerprint: ACB5 EE4E 831C 74BB 7C16 8D27 F55A D3FB 5323 552A
From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-37-primary
Key imported successfully
fedora 1.6 MB/s | 1.6 kB 00:00
GPG key at file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-37-primary (0x5323552A) is already installed
fedora 1.6 MB/s | 1.6 kB 00:00
Importing GPG key 0x38AB71F4:
Userid : "Fedora (36) <fedora-36-primary@fedoraproject.org>"
Fingerprint: 53DE D2CB 922D 8B8D 9E63 FD18 999F 7CBF 38AB 71F4
From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-36-primary
Key imported successfully
Running transaction check
Transaction check succeeded.
Running transaction test
Transaction test succeeded.
Running transaction
Running scriptlet: filesystem-3.18-1.fc37.x86_64 1/1
Preparing : 1/1
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Installing : tzdata-2022a-4.fc37.noarch 3/137
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Installing : python-setuptools-wheel-62.6.0-2.fc37.noarch 5/137
Installing : publicsuffix-list-dafsa-20210518-5.fc37.noarch 6/137
Installing : pcre2-syntax-10.40-1.fc37.1.noarch 7/137
Installing : ncurses-base-6.3-3.20220501.fc37.noarch 8/137
Installing : libssh-config-0.9.6-5.fc37.noarch 9/137
Installing : libreport-filesystem-2.17.1-3.fc37.noarch 10/137
Installing : dnf-data-4.13.0-3.fc37.noarch 11/137
warning: /etc/dnf/dnf.conf created as /etc/dnf/dnf.conf.rpmnew
Installing : fedora-gpg-keys-37-0.3.noarch 12/137
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Running scriptlet: glibc-2.36-1.fc37.x86_64 21/137
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Installing : bash-5.1.16-3.fc37.x86_64 22/137
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Installing : zlib-1.2.12-4.fc37.x86_64 25/137
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Installing : xz-libs-5.2.5-10.fc37.x86_64 27/137
Installing : libzstd-1.5.2-3.fc37.x86_64 28/137
Installing : sqlite-libs-3.39.2-2.fc37.x86_64 29/137
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Verifying : glibc-minimal-langpack-2.36-1.fc37.x86_64 37/137
Verifying : gmp-1:6.2.1-3.fc37.x86_64 38/137
Verifying : gnupg2-2.3.7-3.fc37.x86_64 39/137
Verifying : gnutls-3.7.7-1.fc37.x86_64 40/137
Verifying : gpgme-1.17.0-4.fc37.x86_64 41/137
Verifying : ima-evm-utils-1.4-6.fc37.x86_64 42/137
Verifying : json-c-0.16-2.fc37.x86_64 43/137
Verifying : keyutils-libs-1.6.1-5.fc37.x86_64 44/137
Verifying : krb5-libs-1.19.2-11.fc37.1.x86_64 45/137
Verifying : libacl-2.3.1-4.fc37.x86_64 46/137
Verifying : libarchive-3.6.1-2.fc37.x86_64 47/137
Verifying : libassuan-2.5.5-5.fc37.x86_64 48/137
Verifying : libattr-2.5.1-5.fc37.x86_64 49/137
Verifying : libb2-0.98.1-7.fc37.x86_64 50/137
Verifying : libblkid-2.38.1-1.fc37.x86_64 51/137
Verifying : libbrotli-1.0.9-9.fc37.x86_64 52/137
Verifying : libcap-2.48-5.fc37.x86_64 53/137
Verifying : libcap-ng-0.8.3-3.fc37.x86_64 54/137
Verifying : libcom_err-1.46.5-3.fc37.x86_64 55/137
Verifying : libcomps-0.1.18-4.fc37.x86_64 56/137
Verifying : libcurl-7.84.0-2.fc37.x86_64 57/137
Verifying : libdnf-0.67.0-4.fc37.x86_64 58/137
Verifying : libevent-2.1.12-7.fc37.x86_64 59/137
Verifying : libffi-3.4.2-9.fc37.x86_64 60/137
Verifying : libfsverity-1.4-8.fc37.x86_64 61/137
Verifying : libgcc-12.1.1-3.fc37.1.x86_64 62/137
Verifying : libgcrypt-1.10.1-4.fc37.x86_64 63/137
Verifying : libgomp-12.1.1-3.fc37.1.x86_64 64/137
Verifying : libgpg-error-1.45-2.fc37.x86_64 65/137
Verifying : libidn2-2.3.3-2.fc37.x86_64 66/137
Verifying : libksba-1.6.0-4.fc37.x86_64 67/137
Verifying : libmodulemd-2.14.0-4.fc37.x86_64 68/137
Verifying : libmount-2.38.1-1.fc37.x86_64 69/137
Verifying : libnghttp2-1.48.0-2.fc37.x86_64 70/137
Verifying : libnsl2-2.0.0-4.fc37.x86_64 71/137
Verifying : libpsl-0.21.1-6.fc37.x86_64 72/137
Verifying : librepo-1.14.3-3.fc37.x86_64 73/137
Verifying : libreport-filesystem-2.17.1-3.fc37.noarch 74/137
Verifying : libselinux-3.4-5.fc37.x86_64 75/137
Verifying : libsemanage-3.4-5.fc37.x86_64 76/137
Verifying : libsepol-3.4-3.fc37.x86_64 77/137
Verifying : libsigsegv-2.14-3.fc37.x86_64 78/137
Verifying : libsmartcols-2.38.1-1.fc37.x86_64 79/137
Verifying : libsolv-0.7.22-3.fc37.x86_64 80/137
Verifying : libssh-0.9.6-5.fc37.x86_64 81/137
Verifying : libssh-config-0.9.6-5.fc37.noarch 82/137
Verifying : libstdc++-12.1.1-3.fc37.1.x86_64 83/137
Verifying : libtasn1-4.18.0-3.fc37.x86_64 84/137
Verifying : libtirpc-1.3.2-1.rc5.fc37.x86_64 85/137
Verifying : libunistring-1.0-2.fc37.x86_64 86/137
Verifying : libuuid-2.38.1-1.fc37.x86_64 87/137
Verifying : libverto-0.3.2-4.fc37.x86_64 88/137
Verifying : libxcrypt-4.4.28-2.fc37.x86_64 89/137
Verifying : libxml2-2.9.14-3.fc37.x86_64 90/137
Verifying : libyaml-0.2.5-8.fc37.x86_64 91/137
Verifying : libzstd-1.5.2-3.fc37.x86_64 92/137
Verifying : lua-libs-5.4.4-4.fc37.x86_64 93/137
Verifying : lz4-libs-1.9.3-5.fc37.x86_64 94/137
Verifying : mpdecimal-2.5.1-4.fc37.x86_64 95/137
Verifying : mpfr-4.1.0-10.fc37.x86_64 96/137
Verifying : ncurses-base-6.3-3.20220501.fc37.noarch 97/137
Verifying : ncurses-libs-6.3-3.20220501.fc37.x86_64 98/137
Verifying : nettle-3.8-2.fc37.x86_64 99/137
Verifying : npth-1.6-9.fc37.x86_64 100/137
Verifying : openldap-2.6.2-4.fc37.x86_64 101/137
Verifying : openssl-libs-1:3.0.5-2.fc37.x86_64 102/137
Verifying : p11-kit-0.24.1-3.fc37.x86_64 103/137
Verifying : p11-kit-trust-0.24.1-3.fc37.x86_64 104/137
Verifying : pcre-8.45-1.fc37.2.x86_64 105/137
Verifying : pcre2-10.40-1.fc37.1.x86_64 106/137
Verifying : pcre2-syntax-10.40-1.fc37.1.noarch 107/137
Verifying : popt-1.19~rc1-3.fc37.x86_64 108/137
Verifying : publicsuffix-list-dafsa-20210518-5.fc37.noarch 109/137
Verifying : python-pip-wheel-22.2-1.fc37.noarch 110/137
Verifying : python-setuptools-wheel-62.6.0-2.fc37.noarch 111/137
Verifying : python3-3.11.0~b5-1.fc37.x86_64 112/137
Verifying : python3-dateutil-1:2.8.2-4.fc37.noarch 113/137
Verifying : python3-dbus-1.2.18-5.fc37.x86_64 114/137
Verifying : python3-distro-1.7.0-3.fc37.noarch 115/137
Verifying : python3-dnf-4.13.0-3.fc37.noarch 116/137
Verifying : python3-dnf-plugins-core-4.2.1-3.fc37.noarch 117/137
Verifying : python3-gpg-1.17.0-4.fc37.x86_64 118/137
Verifying : python3-hawkey-0.67.0-4.fc37.x86_64 119/137
Verifying : python3-libcomps-0.1.18-4.fc37.x86_64 120/137
Verifying : python3-libdnf-0.67.0-4.fc37.x86_64 121/137
Verifying : python3-libs-3.11.0~b5-1.fc37.x86_64 122/137
Verifying : python3-rpm-4.18.0-0.beta1.4.fc37.x86_64 123/137
Verifying : python3-six-1.16.0-8.fc37.noarch 124/137
Verifying : readline-8.1-7.fc37.x86_64 125/137
Verifying : rpm-4.18.0-0.beta1.4.fc37.x86_64 126/137
Verifying : rpm-build-libs-4.18.0-0.beta1.4.fc37.x86_64 127/137
Verifying : rpm-libs-4.18.0-0.beta1.4.fc37.x86_64 128/137
Verifying : rpm-sign-libs-4.18.0-0.beta1.4.fc37.x86_64 129/137
Verifying : setup-2.14.1-2.fc37.noarch 130/137
Verifying : shadow-utils-2:4.11.1-4.fc37.x86_64 131/137
Verifying : systemd-libs-251.3-2.fc37.x86_64 132/137
Verifying : tpm2-tss-3.2.0-3.fc37.x86_64 133/137
Verifying : tzdata-2022a-4.fc37.noarch 134/137
Verifying : xz-libs-5.2.5-10.fc37.x86_64 135/137
Verifying : zchunk-libs-1.2.2-2.fc37.x86_64 136/137
Verifying : zlib-1.2.12-4.fc37.x86_64 137/137
Installed products updated.
Installed:
alternatives-1.19-3.fc37.x86_64
audit-libs-3.0.8-3.fc37.x86_64
basesystem-11-14.fc37.noarch
bash-5.1.16-3.fc37.x86_64
bzip2-libs-1.0.8-12.fc37.x86_64
ca-certificates-2022.2.54-5.fc37.noarch
coreutils-9.1-6.fc37.x86_64
coreutils-common-9.1-6.fc37.x86_64
crypto-policies-20220802-1.gita99dfd2.fc37.noarch
curl-7.84.0-2.fc37.x86_64
cyrus-sasl-lib-2.1.28-7.fc37.x86_64
dbus-libs-1:1.14.0-3.fc37.x86_64
dnf-4.13.0-3.fc37.noarch
dnf-data-4.13.0-3.fc37.noarch
dnf-plugins-core-4.2.1-3.fc37.noarch
elfutils-default-yama-scope-0.187-7.fc37.noarch
elfutils-libelf-0.187-7.fc37.x86_64
elfutils-libs-0.187-7.fc37.x86_64
expat-2.4.8-2.fc37.x86_64
fedora-gpg-keys-37-0.3.noarch
fedora-release-37-0.9.noarch
fedora-release-common-37-0.9.noarch
fedora-release-identity-basic-37-0.9.noarch
fedora-repos-37-0.3.noarch
fedora-repos-rawhide-37-0.3.noarch
file-libs-5.42-4.fc37.x86_64
filesystem-3.18-1.fc37.x86_64
findutils-1:4.9.0-2.fc37.x86_64
gawk-5.1.1-4.fc37.x86_64
gdbm-libs-1:1.23-2.fc37.x86_64
glib2-2.73.2-7.fc37.x86_64
glibc-2.36-1.fc37.x86_64
glibc-common-2.36-1.fc37.x86_64
glibc-minimal-langpack-2.36-1.fc37.x86_64
gmp-1:6.2.1-3.fc37.x86_64
gnupg2-2.3.7-3.fc37.x86_64
gnutls-3.7.7-1.fc37.x86_64
gpgme-1.17.0-4.fc37.x86_64
grep-3.7-4.fc37.x86_64
ima-evm-utils-1.4-6.fc37.x86_64
json-c-0.16-2.fc37.x86_64
keyutils-libs-1.6.1-5.fc37.x86_64
krb5-libs-1.19.2-11.fc37.1.x86_64
libacl-2.3.1-4.fc37.x86_64
libarchive-3.6.1-2.fc37.x86_64
libassuan-2.5.5-5.fc37.x86_64
libattr-2.5.1-5.fc37.x86_64
libb2-0.98.1-7.fc37.x86_64
libblkid-2.38.1-1.fc37.x86_64
libbrotli-1.0.9-9.fc37.x86_64
libcap-2.48-5.fc37.x86_64
libcap-ng-0.8.3-3.fc37.x86_64
libcom_err-1.46.5-3.fc37.x86_64
libcomps-0.1.18-4.fc37.x86_64
libcurl-7.84.0-2.fc37.x86_64
libdnf-0.67.0-4.fc37.x86_64
libevent-2.1.12-7.fc37.x86_64
libffi-3.4.2-9.fc37.x86_64
libfsverity-1.4-8.fc37.x86_64
libgcc-12.1.1-3.fc37.1.x86_64
libgcrypt-1.10.1-4.fc37.x86_64
libgomp-12.1.1-3.fc37.1.x86_64
libgpg-error-1.45-2.fc37.x86_64
libidn2-2.3.3-2.fc37.x86_64
libksba-1.6.0-4.fc37.x86_64
libmodulemd-2.14.0-4.fc37.x86_64
libmount-2.38.1-1.fc37.x86_64
libnghttp2-1.48.0-2.fc37.x86_64
libnsl2-2.0.0-4.fc37.x86_64
libpsl-0.21.1-6.fc37.x86_64
librepo-1.14.3-3.fc37.x86_64
libreport-filesystem-2.17.1-3.fc37.noarch
libselinux-3.4-5.fc37.x86_64
libsemanage-3.4-5.fc37.x86_64
libsepol-3.4-3.fc37.x86_64
libsigsegv-2.14-3.fc37.x86_64
libsmartcols-2.38.1-1.fc37.x86_64
libsolv-0.7.22-3.fc37.x86_64
libssh-0.9.6-5.fc37.x86_64
libssh-config-0.9.6-5.fc37.noarch
libstdc++-12.1.1-3.fc37.1.x86_64
libtasn1-4.18.0-3.fc37.x86_64
libtirpc-1.3.2-1.rc5.fc37.x86_64
libunistring-1.0-2.fc37.x86_64
libuuid-2.38.1-1.fc37.x86_64
libverto-0.3.2-4.fc37.x86_64
libxcrypt-4.4.28-2.fc37.x86_64
libxml2-2.9.14-3.fc37.x86_64
libyaml-0.2.5-8.fc37.x86_64
libzstd-1.5.2-3.fc37.x86_64
lua-libs-5.4.4-4.fc37.x86_64
lz4-libs-1.9.3-5.fc37.x86_64
mpdecimal-2.5.1-4.fc37.x86_64
mpfr-4.1.0-10.fc37.x86_64
ncurses-base-6.3-3.20220501.fc37.noarch
ncurses-libs-6.3-3.20220501.fc37.x86_64
nettle-3.8-2.fc37.x86_64
npth-1.6-9.fc37.x86_64
openldap-2.6.2-4.fc37.x86_64
openssl-libs-1:3.0.5-2.fc37.x86_64
p11-kit-0.24.1-3.fc37.x86_64
p11-kit-trust-0.24.1-3.fc37.x86_64
pcre-8.45-1.fc37.2.x86_64
pcre2-10.40-1.fc37.1.x86_64
pcre2-syntax-10.40-1.fc37.1.noarch
popt-1.19~rc1-3.fc37.x86_64
publicsuffix-list-dafsa-20210518-5.fc37.noarch
python-pip-wheel-22.2-1.fc37.noarch
python-setuptools-wheel-62.6.0-2.fc37.noarch
python3-3.11.0~b5-1.fc37.x86_64
python3-dateutil-1:2.8.2-4.fc37.noarch
python3-dbus-1.2.18-5.fc37.x86_64
python3-distro-1.7.0-3.fc37.noarch
python3-dnf-4.13.0-3.fc37.noarch
python3-dnf-plugins-core-4.2.1-3.fc37.noarch
python3-gpg-1.17.0-4.fc37.x86_64
python3-hawkey-0.67.0-4.fc37.x86_64
python3-libcomps-0.1.18-4.fc37.x86_64
python3-libdnf-0.67.0-4.fc37.x86_64
python3-libs-3.11.0~b5-1.fc37.x86_64
python3-rpm-4.18.0-0.beta1.4.fc37.x86_64
python3-six-1.16.0-8.fc37.noarch
readline-8.1-7.fc37.x86_64
rpm-4.18.0-0.beta1.4.fc37.x86_64
rpm-build-libs-4.18.0-0.beta1.4.fc37.x86_64
rpm-libs-4.18.0-0.beta1.4.fc37.x86_64
rpm-sign-libs-4.18.0-0.beta1.4.fc37.x86_64
sed-4.8-11.fc37.x86_64
setup-2.14.1-2.fc37.noarch
shadow-utils-2:4.11.1-4.fc37.x86_64
sqlite-libs-3.39.2-2.fc37.x86_64
systemd-libs-251.3-2.fc37.x86_64
tpm2-tss-3.2.0-3.fc37.x86_64
tzdata-2022a-4.fc37.noarch
xz-libs-5.2.5-10.fc37.x86_64
zchunk-libs-1.2.2-2.fc37.x86_64
zlib-1.2.12-4.fc37.x86_64
Complete!
Finish(bootstrap): dnf install
Start(bootstrap): creating root cache
Finish(bootstrap): creating root cache
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1660140575.154331/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
Mock Version: 3.1
INFO: Mock Version: 3.1
Start: dnf install
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Copr repository 40 kB/s | 3.0 kB 00:00
Copr repository 8.3 MB/s | 1.7 MB 00:00
fedora 270 kB/s | 17 kB 00:00
Dependencies resolved.
================================================================================
Package Arch Version Repo Size
================================================================================
Installing group/module packages:
bash x86_64 5.1.16-3.fc37 copr_base 1.7 M
bzip2 x86_64 1.0.8-12.fc37 fedora 52 k
coreutils x86_64 9.1-6.fc37 copr_base 1.1 M
cpio x86_64 2.13-13.fc37 copr_base 270 k
diffutils x86_64 3.8-3.fc37 copr_base 370 k
fedora-release-common noarch 37-0.9 fedora 22 k
findutils x86_64 1:4.9.0-2.fc37 fedora 492 k
gawk x86_64 5.1.1-4.fc37 fedora 1.0 M
glibc-minimal-langpack x86_64 2.36-1.fc37 fedora 81 k
grep x86_64 3.7-4.fc37 copr_base 263 k
gzip x86_64 1.12-2.fc37 copr_base 159 k
info x86_64 6.8-4.fc37 fedora 225 k
patch x86_64 2.7.6-17.fc37 copr_base 124 k
redhat-rpm-config noarch 226-1.fc37 fedora 74 k
rpm-build x86_64 4.18.0-0.beta1.4.fc37 fedora 76 k
sed x86_64 4.8-11.fc37 copr_base 297 k
shadow-utils x86_64 2:4.11.1-4.fc37 fedora 1.1 M
tar x86_64 2:1.34-4.fc37 copr_base 877 k
unzip x86_64 6.0-58.fc37 fedora 182 k
util-linux x86_64 2.38.1-1.fc37 fedora 2.3 M
which x86_64 2.21-35.fc37 fedora 41 k
xz x86_64 5.2.5-10.fc37 fedora 223 k
Installing dependencies:
alternatives x86_64 1.19-3.fc37 fedora 36 k
ansible-srpm-macros noarch 1-6.fc37 fedora 7.5 k
audit-libs x86_64 3.0.8-3.fc37 fedora 116 k
authselect x86_64 1.4.0-3.fc37 fedora 144 k
authselect-libs x86_64 1.4.0-3.fc37 fedora 248 k
basesystem noarch 11-14.fc37 fedora 7.0 k
binutils x86_64 2.38-23.fc37 fedora 5.4 M
binutils-gold x86_64 2.38-23.fc37 fedora 776 k
bzip2-libs x86_64 1.0.8-12.fc37 fedora 41 k
ca-certificates noarch 2022.2.54-5.fc37 fedora 829 k
coreutils-common x86_64 9.1-6.fc37 copr_base 2.0 M
cracklib x86_64 2.9.6-28.fc36 fedora 81 k
crypto-policies noarch 20220802-1.gita99dfd2.fc37 fedora 86 k
curl x86_64 7.84.0-2.fc37 fedora 313 k
cyrus-sasl-lib x86_64 2.1.28-7.fc37 fedora 792 k
debugedit x86_64 5.0-5.fc37 copr_base 77 k
dwz x86_64 0.14-7.fc37 fedora 129 k
ed x86_64 1.18-2.fc37 fedora 78 k
efi-srpm-macros noarch 5-6.fc37 fedora 22 k
elfutils x86_64 0.187-7.fc37 copr_base 523 k
elfutils-debuginfod-client x86_64 0.187-7.fc37 copr_base 39 k
elfutils-default-yama-scope noarch 0.187-7.fc37 copr_base 17 k
elfutils-libelf x86_64 0.187-7.fc37 copr_base 198 k
elfutils-libs x86_64 0.187-7.fc37 copr_base 257 k
fedora-gpg-keys noarch 37-0.3 fedora 114 k
fedora-release noarch 37-0.9 fedora 11 k
fedora-release-identity-basic
noarch 37-0.9 fedora 12 k
fedora-repos noarch 37-0.3 fedora 10 k
fedora-repos-rawhide noarch 37-0.3 fedora 9.8 k
file x86_64 5.42-4.fc37 fedora 49 k
file-libs x86_64 5.42-4.fc37 fedora 676 k
filesystem x86_64 3.18-1.fc37 fedora 1.1 M
fonts-srpm-macros noarch 1:2.0.5-8.fc37 fedora 26 k
fpc-srpm-macros noarch 1.3-6.fc37 fedora 7.7 k
gdb-minimal x86_64 12.1-4.fc37 fedora 3.9 M
gdbm-libs x86_64 1:1.23-2.fc37 fedora 56 k
ghc-srpm-macros noarch 1.5.0-7.fc37 fedora 7.8 k
glibc x86_64 2.36-1.fc37 fedora 2.1 M
glibc-common x86_64 2.36-1.fc37 fedora 359 k
glibc-gconv-extra x86_64 2.36-1.fc37 fedora 1.6 M
gmp x86_64 1:6.2.1-3.fc37 fedora 315 k
gnat-srpm-macros noarch 4-16.fc37 fedora 8.3 k
go-srpm-macros noarch 3.0.15-3.fc37 fedora 26 k
kernel-srpm-macros noarch 1.0-15.fc37 fedora 9.4 k
keyutils-libs x86_64 1.6.1-5.fc37 fedora 31 k
krb5-libs x86_64 1.19.2-11.fc37.1 fedora 727 k
libacl x86_64 2.3.1-4.fc37 fedora 23 k
libarchive x86_64 3.6.1-2.fc37 fedora 397 k
libattr x86_64 2.5.1-5.fc37 fedora 18 k
libblkid x86_64 2.38.1-1.fc37 fedora 107 k
libbrotli x86_64 1.0.9-9.fc37 fedora 315 k
libcap x86_64 2.48-5.fc37 fedora 67 k
libcap-ng x86_64 0.8.3-3.fc37 fedora 33 k
libcom_err x86_64 1.46.5-3.fc37 fedora 25 k
libcurl x86_64 7.84.0-2.fc37 fedora 306 k
libdb x86_64 5.3.28-53.fc37 fedora 760 k
libeconf x86_64 0.4.0-4.fc37 fedora 27 k
libevent x86_64 2.1.12-7.fc37 fedora 261 k
libfdisk x86_64 2.38.1-1.fc37 fedora 160 k
libffi x86_64 3.4.2-9.fc37 fedora 37 k
libgcc x86_64 12.1.1-3.fc37.1 fedora 105 k
libgomp x86_64 12.1.1-3.fc37.1 fedora 292 k
libidn2 x86_64 2.3.3-2.fc37 fedora 113 k
libmount x86_64 2.38.1-1.fc37 fedora 135 k
libnghttp2 x86_64 1.48.0-2.fc37 fedora 75 k
libnsl2 x86_64 2.0.0-4.fc37 fedora 30 k
libpkgconf x86_64 1.8.0-3.fc37 fedora 36 k
libpsl x86_64 0.21.1-6.fc37 fedora 63 k
libpwquality x86_64 1.4.4-11.fc37 fedora 116 k
libselinux x86_64 3.4-5.fc37 fedora 86 k
libsemanage x86_64 3.4-5.fc37 fedora 120 k
libsepol x86_64 3.4-3.fc37 fedora 322 k
libsigsegv x86_64 2.14-3.fc37 fedora 27 k
libsmartcols x86_64 2.38.1-1.fc37 fedora 64 k
libssh x86_64 0.9.6-5.fc37 fedora 203 k
libssh-config noarch 0.9.6-5.fc37 fedora 7.8 k
libstdc++ x86_64 12.1.1-3.fc37.1 fedora 797 k
libtasn1 x86_64 4.18.0-3.fc37 fedora 75 k
libtirpc x86_64 1.3.2-1.rc5.fc37 fedora 93 k
libunistring x86_64 1.0-2.fc37 fedora 549 k
libutempter x86_64 1.2.1-7.fc37 fedora 26 k
libuuid x86_64 2.38.1-1.fc37 fedora 28 k
libverto x86_64 0.3.2-4.fc37 fedora 21 k
libxcrypt x86_64 4.4.28-2.fc37 fedora 118 k
libxml2 x86_64 2.9.14-3.fc37 fedora 752 k
libzstd x86_64 1.5.2-3.fc37 fedora 294 k
lua-libs x86_64 5.4.4-4.fc37 fedora 217 k
lua-srpm-macros noarch 1-7.fc37 fedora 8.8 k
lz4-libs x86_64 1.9.3-5.fc37 fedora 70 k
mpfr x86_64 4.1.0-10.fc37 fedora 331 k
ncurses-base noarch 6.3-3.20220501.fc37 fedora 86 k
ncurses-libs x86_64 6.3-3.20220501.fc37 fedora 329 k
nim-srpm-macros noarch 3-7.fc37 fedora 8.4 k
ocaml-srpm-macros noarch 7-2.fc37 fedora 13 k
openblas-srpm-macros noarch 2-12.fc37 fedora 7.5 k
openldap x86_64 2.6.2-4.fc37 fedora 254 k
openssl-libs x86_64 1:3.0.5-2.fc37 fedora 2.1 M
p11-kit x86_64 0.24.1-3.fc37 fedora 376 k
p11-kit-trust x86_64 0.24.1-3.fc37 fedora 138 k
package-notes-srpm-macros noarch 0.4-16.fc37 fedora 11 k
pam x86_64 1.5.2-14.fc37 fedora 560 k
pam-libs x86_64 1.5.2-14.fc37 fedora 58 k
pcre x86_64 8.45-1.fc37.2 fedora 202 k
pcre2 x86_64 10.40-1.fc37.1 fedora 236 k
pcre2-syntax noarch 10.40-1.fc37.1 fedora 142 k
perl-srpm-macros noarch 1-46.fc37 fedora 8.3 k
pkgconf x86_64 1.8.0-3.fc37 fedora 41 k
pkgconf-m4 noarch 1.8.0-3.fc37 fedora 14 k
pkgconf-pkg-config x86_64 1.8.0-3.fc37 fedora 10 k
popt x86_64 1.19~rc1-3.fc37 fedora 65 k
publicsuffix-list-dafsa noarch 20210518-5.fc37 fedora 58 k
python-srpm-macros noarch 3.11-4.fc37 fedora 25 k
qt5-srpm-macros noarch 5.15.5-2.fc37 fedora 8.1 k
readline x86_64 8.1-7.fc37 fedora 211 k
rpm x86_64 4.18.0-0.beta1.4.fc37 fedora 570 k
rpm-build-libs x86_64 4.18.0-0.beta1.4.fc37 fedora 93 k
rpm-libs x86_64 4.18.0-0.beta1.4.fc37 fedora 319 k
rpmautospec-rpm-macros noarch 0.3.0-1.fc37 fedora 8.8 k
rust-srpm-macros noarch 22-1.fc37 fedora 9.5 k
setup noarch 2.14.1-2.fc37 fedora 149 k
sqlite-libs x86_64 3.39.2-2.fc37 copr_base 657 k
systemd-libs x86_64 251.3-2.fc37 fedora 620 k
tzdata noarch 2022a-4.fc37 fedora 719 k
util-linux-core x86_64 2.38.1-1.fc37 fedora 470 k
xxhash-libs x86_64 0.8.1-3.fc37 fedora 41 k
xz-libs x86_64 5.2.5-10.fc37 fedora 92 k
zip x86_64 3.0-33.fc37 fedora 259 k
zlib x86_64 1.2.12-4.fc37 fedora 94 k
zstd x86_64 1.5.2-3.fc37 fedora 447 k
Installing Groups:
Buildsystem building group
Transaction Summary
================================================================================
Install 151 Packages
Total size: 51 M
Installed size: 177 M
Downloading Packages:
[SKIPPED] bash-5.1.16-3.fc37.x86_64.rpm: Already downloaded
[SKIPPED] coreutils-9.1-6.fc37.x86_64.rpm: Already downloaded
[SKIPPED] coreutils-common-9.1-6.fc37.x86_64.rpm: Already downloaded
[SKIPPED] cpio-2.13-13.fc37.x86_64.rpm: Already downloaded
[SKIPPED] debugedit-5.0-5.fc37.x86_64.rpm: Already downloaded
[SKIPPED] diffutils-3.8-3.fc37.x86_64.rpm: Already downloaded
[SKIPPED] elfutils-0.187-7.fc37.x86_64.rpm: Already downloaded
[SKIPPED] elfutils-debuginfod-client-0.187-7.fc37.x86_64.rpm: Already downloaded
[SKIPPED] elfutils-default-yama-scope-0.187-7.fc37.noarch.rpm: Already downloaded
[SKIPPED] elfutils-libelf-0.187-7.fc37.x86_64.rpm: Already downloaded
[SKIPPED] elfutils-libs-0.187-7.fc37.x86_64.rpm: Already downloaded
[SKIPPED] grep-3.7-4.fc37.x86_64.rpm: Already downloaded
[SKIPPED] gzip-1.12-2.fc37.x86_64.rpm: Already downloaded
[SKIPPED] patch-2.7.6-17.fc37.x86_64.rpm: Already downloaded
[SKIPPED] sed-4.8-11.fc37.x86_64.rpm: Already downloaded
[SKIPPED] sqlite-libs-3.39.2-2.fc37.x86_64.rpm: Already downloaded
[SKIPPED] tar-1.34-4.fc37.x86_64.rpm: Already downloaded
[SKIPPED] alternatives-1.19-3.fc37.x86_64.rpm: Already downloaded
[SKIPPED] ansible-srpm-macros-1-6.fc37.noarch.rpm: Already downloaded
[SKIPPED] audit-libs-3.0.8-3.fc37.x86_64.rpm: Already downloaded
[SKIPPED] authselect-1.4.0-3.fc37.x86_64.rpm: Already downloaded
[SKIPPED] authselect-libs-1.4.0-3.fc37.x86_64.rpm: Already downloaded
[SKIPPED] basesystem-11-14.fc37.noarch.rpm: Already downloaded
[SKIPPED] binutils-2.38-23.fc37.x86_64.rpm: Already downloaded
[SKIPPED] binutils-gold-2.38-23.fc37.x86_64.rpm: Already downloaded
[SKIPPED] bzip2-1.0.8-12.fc37.x86_64.rpm: Already downloaded
[SKIPPED] bzip2-libs-1.0.8-12.fc37.x86_64.rpm: Already downloaded
[SKIPPED] ca-certificates-2022.2.54-5.fc37.noarch.rpm: Already downloaded
[SKIPPED] cracklib-2.9.6-28.fc36.x86_64.rpm: Already downloaded
[SKIPPED] crypto-policies-20220802-1.gita99dfd2.fc37.noarch.rpm: Already downloaded
[SKIPPED] curl-7.84.0-2.fc37.x86_64.rpm: Already downloaded
[SKIPPED] cyrus-sasl-lib-2.1.28-7.fc37.x86_64.rpm: Already downloaded
[SKIPPED] dwz-0.14-7.fc37.x86_64.rpm: Already downloaded
[SKIPPED] ed-1.18-2.fc37.x86_64.rpm: Already downloaded
[SKIPPED] efi-srpm-macros-5-6.fc37.noarch.rpm: Already downloaded
[SKIPPED] fedora-gpg-keys-37-0.3.noarch.rpm: Already downloaded
[SKIPPED] fedora-release-37-0.9.noarch.rpm: Already downloaded
[SKIPPED] fedora-release-common-37-0.9.noarch.rpm: Already downloaded
[SKIPPED] fedora-release-identity-basic-37-0.9.noarch.rpm: Already downloaded
[SKIPPED] fedora-repos-37-0.3.noarch.rpm: Already downloaded
[SKIPPED] fedora-repos-rawhide-37-0.3.noarch.rpm: Already downloaded
[SKIPPED] file-5.42-4.fc37.x86_64.rpm: Already downloaded
[SKIPPED] file-libs-5.42-4.fc37.x86_64.rpm: Already downloaded
[SKIPPED] filesystem-3.18-1.fc37.x86_64.rpm: Already downloaded
[SKIPPED] findutils-4.9.0-2.fc37.x86_64.rpm: Already downloaded
[SKIPPED] fonts-srpm-macros-2.0.5-8.fc37.noarch.rpm: Already downloaded
[SKIPPED] fpc-srpm-macros-1.3-6.fc37.noarch.rpm: Already downloaded
[SKIPPED] gawk-5.1.1-4.fc37.x86_64.rpm: Already downloaded
[SKIPPED] gdb-minimal-12.1-4.fc37.x86_64.rpm: Already downloaded
[SKIPPED] gdbm-libs-1.23-2.fc37.x86_64.rpm: Already downloaded
[SKIPPED] ghc-srpm-macros-1.5.0-7.fc37.noarch.rpm: Already downloaded
[SKIPPED] glibc-2.36-1.fc37.x86_64.rpm: Already downloaded
[SKIPPED] glibc-common-2.36-1.fc37.x86_64.rpm: Already downloaded
[SKIPPED] glibc-gconv-extra-2.36-1.fc37.x86_64.rpm: Already downloaded
[SKIPPED] glibc-minimal-langpack-2.36-1.fc37.x86_64.rpm: Already downloaded
[SKIPPED] gmp-6.2.1-3.fc37.x86_64.rpm: Already downloaded
[SKIPPED] gnat-srpm-macros-4-16.fc37.noarch.rpm: Already downloaded
[SKIPPED] go-srpm-macros-3.0.15-3.fc37.noarch.rpm: Already downloaded
[SKIPPED] info-6.8-4.fc37.x86_64.rpm: Already downloaded
[SKIPPED] kernel-srpm-macros-1.0-15.fc37.noarch.rpm: Already downloaded
[SKIPPED] keyutils-libs-1.6.1-5.fc37.x86_64.rpm: Already downloaded
[SKIPPED] krb5-libs-1.19.2-11.fc37.1.x86_64.rpm: Already downloaded
[SKIPPED] libacl-2.3.1-4.fc37.x86_64.rpm: Already downloaded
[SKIPPED] libarchive-3.6.1-2.fc37.x86_64.rpm: Already downloaded
[SKIPPED] libattr-2.5.1-5.fc37.x86_64.rpm: Already downloaded
[SKIPPED] libblkid-2.38.1-1.fc37.x86_64.rpm: Already downloaded
[SKIPPED] libbrotli-1.0.9-9.fc37.x86_64.rpm: Already downloaded
[SKIPPED] libcap-2.48-5.fc37.x86_64.rpm: Already downloaded
[SKIPPED] libcap-ng-0.8.3-3.fc37.x86_64.rpm: Already downloaded
[SKIPPED] libcom_err-1.46.5-3.fc37.x86_64.rpm: Already downloaded
[SKIPPED] libcurl-7.84.0-2.fc37.x86_64.rpm: Already downloaded
[SKIPPED] libdb-5.3.28-53.fc37.x86_64.rpm: Already downloaded
[SKIPPED] libeconf-0.4.0-4.fc37.x86_64.rpm: Already downloaded
[SKIPPED] libevent-2.1.12-7.fc37.x86_64.rpm: Already downloaded
[SKIPPED] libfdisk-2.38.1-1.fc37.x86_64.rpm: Already downloaded
[SKIPPED] libffi-3.4.2-9.fc37.x86_64.rpm: Already downloaded
[SKIPPED] libgcc-12.1.1-3.fc37.1.x86_64.rpm: Already downloaded
[SKIPPED] libgomp-12.1.1-3.fc37.1.x86_64.rpm: Already downloaded
[SKIPPED] libidn2-2.3.3-2.fc37.x86_64.rpm: Already downloaded
[SKIPPED] libmount-2.38.1-1.fc37.x86_64.rpm: Already downloaded
[SKIPPED] libnghttp2-1.48.0-2.fc37.x86_64.rpm: Already downloaded
[SKIPPED] libnsl2-2.0.0-4.fc37.x86_64.rpm: Already downloaded
[SKIPPED] libpkgconf-1.8.0-3.fc37.x86_64.rpm: Already downloaded
[SKIPPED] libpsl-0.21.1-6.fc37.x86_64.rpm: Already downloaded
[SKIPPED] libpwquality-1.4.4-11.fc37.x86_64.rpm: Already downloaded
[SKIPPED] libselinux-3.4-5.fc37.x86_64.rpm: Already downloaded
[SKIPPED] libsemanage-3.4-5.fc37.x86_64.rpm: Already downloaded
[SKIPPED] libsepol-3.4-3.fc37.x86_64.rpm: Already downloaded
[SKIPPED] libsigsegv-2.14-3.fc37.x86_64.rpm: Already downloaded
[SKIPPED] libsmartcols-2.38.1-1.fc37.x86_64.rpm: Already downloaded
[SKIPPED] libssh-0.9.6-5.fc37.x86_64.rpm: Already downloaded
[SKIPPED] libssh-config-0.9.6-5.fc37.noarch.rpm: Already downloaded
[SKIPPED] libstdc++-12.1.1-3.fc37.1.x86_64.rpm: Already downloaded
[SKIPPED] libtasn1-4.18.0-3.fc37.x86_64.rpm: Already downloaded
[SKIPPED] libtirpc-1.3.2-1.rc5.fc37.x86_64.rpm: Already downloaded
[SKIPPED] libunistring-1.0-2.fc37.x86_64.rpm: Already downloaded
[SKIPPED] libutempter-1.2.1-7.fc37.x86_64.rpm: Already downloaded
[SKIPPED] libuuid-2.38.1-1.fc37.x86_64.rpm: Already downloaded
[SKIPPED] libverto-0.3.2-4.fc37.x86_64.rpm: Already downloaded
[SKIPPED] libxcrypt-4.4.28-2.fc37.x86_64.rpm: Already downloaded
[SKIPPED] libxml2-2.9.14-3.fc37.x86_64.rpm: Already downloaded
[SKIPPED] libzstd-1.5.2-3.fc37.x86_64.rpm: Already downloaded
[SKIPPED] lua-libs-5.4.4-4.fc37.x86_64.rpm: Already downloaded
[SKIPPED] lua-srpm-macros-1-7.fc37.noarch.rpm: Already downloaded
[SKIPPED] lz4-libs-1.9.3-5.fc37.x86_64.rpm: Already downloaded
[SKIPPED] mpfr-4.1.0-10.fc37.x86_64.rpm: Already downloaded
[SKIPPED] ncurses-base-6.3-3.20220501.fc37.noarch.rpm: Already downloaded
[SKIPPED] ncurses-libs-6.3-3.20220501.fc37.x86_64.rpm: Already downloaded
[SKIPPED] nim-srpm-macros-3-7.fc37.noarch.rpm: Already downloaded
[SKIPPED] ocaml-srpm-macros-7-2.fc37.noarch.rpm: Already downloaded
[SKIPPED] openblas-srpm-macros-2-12.fc37.noarch.rpm: Already downloaded
[SKIPPED] openldap-2.6.2-4.fc37.x86_64.rpm: Already downloaded
[SKIPPED] openssl-libs-3.0.5-2.fc37.x86_64.rpm: Already downloaded
[SKIPPED] p11-kit-0.24.1-3.fc37.x86_64.rpm: Already downloaded
[SKIPPED] p11-kit-trust-0.24.1-3.fc37.x86_64.rpm: Already downloaded
[SKIPPED] package-notes-srpm-macros-0.4-16.fc37.noarch.rpm: Already downloaded
[SKIPPED] pam-1.5.2-14.fc37.x86_64.rpm: Already downloaded
[SKIPPED] pam-libs-1.5.2-14.fc37.x86_64.rpm: Already downloaded
[SKIPPED] pcre-8.45-1.fc37.2.x86_64.rpm: Already downloaded
[SKIPPED] pcre2-10.40-1.fc37.1.x86_64.rpm: Already downloaded
[SKIPPED] pcre2-syntax-10.40-1.fc37.1.noarch.rpm: Already downloaded
[SKIPPED] perl-srpm-macros-1-46.fc37.noarch.rpm: Already downloaded
[SKIPPED] pkgconf-1.8.0-3.fc37.x86_64.rpm: Already downloaded
[SKIPPED] pkgconf-m4-1.8.0-3.fc37.noarch.rpm: Already downloaded
[SKIPPED] pkgconf-pkg-config-1.8.0-3.fc37.x86_64.rpm: Already downloaded
[SKIPPED] popt-1.19~rc1-3.fc37.x86_64.rpm: Already downloaded
[SKIPPED] publicsuffix-list-dafsa-20210518-5.fc37.noarch.rpm: Already downloaded
[SKIPPED] python-srpm-macros-3.11-4.fc37.noarch.rpm: Already downloaded
[SKIPPED] qt5-srpm-macros-5.15.5-2.fc37.noarch.rpm: Already downloaded
[SKIPPED] readline-8.1-7.fc37.x86_64.rpm: Already downloaded
[SKIPPED] redhat-rpm-config-226-1.fc37.noarch.rpm: Already downloaded
[SKIPPED] rpm-4.18.0-0.beta1.4.fc37.x86_64.rpm: Already downloaded
[SKIPPED] rpm-build-4.18.0-0.beta1.4.fc37.x86_64.rpm: Already downloaded
[SKIPPED] rpm-build-libs-4.18.0-0.beta1.4.fc37.x86_64.rpm: Already downloaded
[SKIPPED] rpm-libs-4.18.0-0.beta1.4.fc37.x86_64.rpm: Already downloaded
[SKIPPED] rpmautospec-rpm-macros-0.3.0-1.fc37.noarch.rpm: Already downloaded
[SKIPPED] rust-srpm-macros-22-1.fc37.noarch.rpm: Already downloaded
[SKIPPED] setup-2.14.1-2.fc37.noarch.rpm: Already downloaded
[SKIPPED] shadow-utils-4.11.1-4.fc37.x86_64.rpm: Already downloaded
[SKIPPED] systemd-libs-251.3-2.fc37.x86_64.rpm: Already downloaded
[SKIPPED] tzdata-2022a-4.fc37.noarch.rpm: Already downloaded
[SKIPPED] unzip-6.0-58.fc37.x86_64.rpm: Already downloaded
[SKIPPED] util-linux-2.38.1-1.fc37.x86_64.rpm: Already downloaded
[SKIPPED] util-linux-core-2.38.1-1.fc37.x86_64.rpm: Already downloaded
[SKIPPED] which-2.21-35.fc37.x86_64.rpm: Already downloaded
[SKIPPED] xxhash-libs-0.8.1-3.fc37.x86_64.rpm: Already downloaded
[SKIPPED] xz-5.2.5-10.fc37.x86_64.rpm: Already downloaded
[SKIPPED] xz-libs-5.2.5-10.fc37.x86_64.rpm: Already downloaded
[SKIPPED] zip-3.0-33.fc37.x86_64.rpm: Already downloaded
[SKIPPED] zlib-1.2.12-4.fc37.x86_64.rpm: Already downloaded
[SKIPPED] zstd-1.5.2-3.fc37.x86_64.rpm: Already downloaded
fedora 1.6 MB/s | 1.6 kB 00:00
Importing GPG key 0x5323552A:
Userid : "Fedora (37) <fedora-37-primary@fedoraproject.org>"
Fingerprint: ACB5 EE4E 831C 74BB 7C16 8D27 F55A D3FB 5323 552A
From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-37-primary
Key imported successfully
fedora 1.6 MB/s | 1.6 kB 00:00
GPG key at file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-37-primary (0x5323552A) is already installed
fedora 1.6 MB/s | 1.6 kB 00:00
Importing GPG key 0x38AB71F4:
Userid : "Fedora (36) <fedora-36-primary@fedoraproject.org>"
Fingerprint: 53DE D2CB 922D 8B8D 9E63 FD18 999F 7CBF 38AB 71F4
From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-36-primary
Key imported successfully
Running transaction check
Transaction check succeeded.
Running transaction test
Transaction test succeeded.
Running transaction
Running scriptlet: filesystem-3.18-1.fc37.x86_64 1/1
Preparing : 1/1
Installing : libgcc-12.1.1-3.fc37.1.x86_64 1/151
Running scriptlet: libgcc-12.1.1-3.fc37.1.x86_64 1/151
Installing : crypto-policies-20220802-1.gita99dfd2.fc37.noarc 2/151
Running scriptlet: crypto-policies-20220802-1.gita99dfd2.fc37.noarc 2/151
Installing : fedora-release-identity-basic-37-0.9.noarch 3/151
Installing : tzdata-2022a-4.fc37.noarch 4/151
Installing : rust-srpm-macros-22-1.fc37.noarch 5/151
Installing : qt5-srpm-macros-5.15.5-2.fc37.noarch 6/151
Installing : publicsuffix-list-dafsa-20210518-5.fc37.noarch 7/151
Installing : pkgconf-m4-1.8.0-3.fc37.noarch 8/151
Installing : perl-srpm-macros-1-46.fc37.noarch 9/151
Installing : pcre2-syntax-10.40-1.fc37.1.noarch 10/151
Installing : openblas-srpm-macros-2-12.fc37.noarch 11/151
Installing : ocaml-srpm-macros-7-2.fc37.noarch 12/151
Installing : nim-srpm-macros-3-7.fc37.noarch 13/151
Installing : ncurses-base-6.3-3.20220501.fc37.noarch 14/151
Installing : libssh-config-0.9.6-5.fc37.noarch 15/151
Installing : kernel-srpm-macros-1.0-15.fc37.noarch 16/151
Installing : gnat-srpm-macros-4-16.fc37.noarch 17/151
Installing : ghc-srpm-macros-1.5.0-7.fc37.noarch 18/151
Installing : fpc-srpm-macros-1.3-6.fc37.noarch 19/151
Installing : fedora-gpg-keys-37-0.3.noarch 20/151
Installing : fedora-release-37-0.9.noarch 21/151
Installing : fedora-release-common-37-0.9.noarch 22/151
Installing : fedora-repos-rawhide-37-0.3.noarch 23/151
Installing : fedora-repos-37-0.3.noarch 24/151
Installing : setup-2.14.1-2.fc37.noarch 25/151
warning: /etc/hosts created as /etc/hosts.rpmnew
Running scriptlet: setup-2.14.1-2.fc37.noarch 25/151
Installing : filesystem-3.18-1.fc37.x86_64 26/151
Installing : basesystem-11-14.fc37.noarch 27/151
Installing : glibc-gconv-extra-2.36-1.fc37.x86_64 28/151
Running scriptlet: glibc-gconv-extra-2.36-1.fc37.x86_64 28/151
Installing : ncurses-libs-6.3-3.20220501.fc37.x86_64 29/151
Running scriptlet: glibc-2.36-1.fc37.x86_64 30/151
Installing : glibc-2.36-1.fc37.x86_64 30/151
Running scriptlet: glibc-2.36-1.fc37.x86_64 30/151
Installing : bash-5.1.16-3.fc37.x86_64 31/151
Running scriptlet: bash-5.1.16-3.fc37.x86_64 31/151
Installing : glibc-common-2.36-1.fc37.x86_64 32/151
Installing : glibc-minimal-langpack-2.36-1.fc37.x86_64 33/151
Installing : zlib-1.2.12-4.fc37.x86_64 34/151
Installing : xz-libs-5.2.5-10.fc37.x86_64 35/151
Installing : bzip2-libs-1.0.8-12.fc37.x86_64 36/151
Installing : elfutils-libelf-0.187-7.fc37.x86_64 37/151
Installing : libstdc++-12.1.1-3.fc37.1.x86_64 38/151
Installing : libuuid-2.38.1-1.fc37.x86_64 39/151
Installing : libzstd-1.5.2-3.fc37.x86_64 40/151
Installing : popt-1.19~rc1-3.fc37.x86_64 41/151
Installing : libblkid-2.38.1-1.fc37.x86_64 42/151
Installing : gmp-1:6.2.1-3.fc37.x86_64 43/151
Installing : libattr-2.5.1-5.fc37.x86_64 44/151
Installing : libacl-2.3.1-4.fc37.x86_64 45/151
Installing : libcap-2.48-5.fc37.x86_64 46/151
Installing : libxcrypt-4.4.28-2.fc37.x86_64 47/151
Installing : readline-8.1-7.fc37.x86_64 48/151
Installing : lz4-libs-1.9.3-5.fc37.x86_64 49/151
Installing : systemd-libs-251.3-2.fc37.x86_64 50/151
Installing : mpfr-4.1.0-10.fc37.x86_64 51/151
Installing : dwz-0.14-7.fc37.x86_64 52/151
Installing : unzip-6.0-58.fc37.x86_64 53/151
Installing : sqlite-libs-3.39.2-2.fc37.x86_64 54/151
Installing : file-libs-5.42-4.fc37.x86_64 55/151
Installing : file-5.42-4.fc37.x86_64 56/151
Installing : alternatives-1.19-3.fc37.x86_64 57/151
Installing : libcap-ng-0.8.3-3.fc37.x86_64 58/151
Installing : audit-libs-3.0.8-3.fc37.x86_64 59/151
Installing : libcom_err-1.46.5-3.fc37.x86_64 60/151
Installing : libeconf-0.4.0-4.fc37.x86_64 61/151
Installing : pam-libs-1.5.2-14.fc37.x86_64 62/151
Installing : libsepol-3.4-3.fc37.x86_64 63/151
Installing : libsmartcols-2.38.1-1.fc37.x86_64 64/151
Installing : libunistring-1.0-2.fc37.x86_64 65/151
Installing : libidn2-2.3.3-2.fc37.x86_64 66/151
Installing : lua-libs-5.4.4-4.fc37.x86_64 67/151
Installing : libpsl-0.21.1-6.fc37.x86_64 68/151
Installing : zip-3.0-33.fc37.x86_64 69/151
Installing : zstd-1.5.2-3.fc37.x86_64 70/151
Installing : libfdisk-2.38.1-1.fc37.x86_64 71/151
Installing : bzip2-1.0.8-12.fc37.x86_64 72/151
Installing : libxml2-2.9.14-3.fc37.x86_64 73/151
Installing : elfutils-default-yama-scope-0.187-7.fc37.noarch 74/151
Running scriptlet: elfutils-default-yama-scope-0.187-7.fc37.noarch 74/151
Installing : ed-1.18-2.fc37.x86_64 75/151
Installing : package-notes-srpm-macros-0.4-16.fc37.noarch 76/151
Installing : cpio-2.13-13.fc37.x86_64 77/151
Installing : diffutils-3.8-3.fc37.x86_64 78/151
Installing : gdbm-libs-1:1.23-2.fc37.x86_64 79/151
Installing : cyrus-sasl-lib-2.1.28-7.fc37.x86_64 80/151
Installing : keyutils-libs-1.6.1-5.fc37.x86_64 81/151
Installing : libbrotli-1.0.9-9.fc37.x86_64 82/151
Installing : libdb-5.3.28-53.fc37.x86_64 83/151
Installing : libffi-3.4.2-9.fc37.x86_64 84/151
Installing : p11-kit-0.24.1-3.fc37.x86_64 85/151
Installing : libgomp-12.1.1-3.fc37.1.x86_64 86/151
Installing : libnghttp2-1.48.0-2.fc37.x86_64 87/151
Installing : libpkgconf-1.8.0-3.fc37.x86_64 88/151
Installing : pkgconf-1.8.0-3.fc37.x86_64 89/151
Installing : pkgconf-pkg-config-1.8.0-3.fc37.x86_64 90/151
Installing : libsigsegv-2.14-3.fc37.x86_64 91/151
Installing : gawk-5.1.1-4.fc37.x86_64 92/151
Installing : libtasn1-4.18.0-3.fc37.x86_64 93/151
Installing : p11-kit-trust-0.24.1-3.fc37.x86_64 94/151
Running scriptlet: p11-kit-trust-0.24.1-3.fc37.x86_64 94/151
Installing : libverto-0.3.2-4.fc37.x86_64 95/151
Installing : pcre-8.45-1.fc37.2.x86_64 96/151
Installing : grep-3.7-4.fc37.x86_64 97/151
Installing : xz-5.2.5-10.fc37.x86_64 98/151
Installing : pcre2-10.40-1.fc37.1.x86_64 99/151
Installing : libselinux-3.4-5.fc37.x86_64 100/151
Installing : sed-4.8-11.fc37.x86_64 101/151
Installing : findutils-1:4.9.0-2.fc37.x86_64 102/151
Installing : libmount-2.38.1-1.fc37.x86_64 103/151
Installing : util-linux-core-2.38.1-1.fc37.x86_64 104/151
Installing : patch-2.7.6-17.fc37.x86_64 105/151
Installing : tar-2:1.34-4.fc37.x86_64 106/151
Installing : libsemanage-3.4-5.fc37.x86_64 107/151
Installing : shadow-utils-2:4.11.1-4.fc37.x86_64 108/151
Running scriptlet: libutempter-1.2.1-7.fc37.x86_64 109/151
Installing : libutempter-1.2.1-7.fc37.x86_64 109/151
Installing : xxhash-libs-0.8.1-3.fc37.x86_64 110/151
Installing : ansible-srpm-macros-1-6.fc37.noarch 111/151
Installing : coreutils-common-9.1-6.fc37.x86_64 112/151
Installing : openssl-libs-1:3.0.5-2.fc37.x86_64 113/151
Installing : coreutils-9.1-6.fc37.x86_64 114/151
Running scriptlet: ca-certificates-2022.2.54-5.fc37.noarch 115/151
Installing : ca-certificates-2022.2.54-5.fc37.noarch 115/151
Running scriptlet: ca-certificates-2022.2.54-5.fc37.noarch 115/151
Installing : krb5-libs-1.19.2-11.fc37.1.x86_64 116/151
Installing : libtirpc-1.3.2-1.rc5.fc37.x86_64 117/151
Installing : gzip-1.12-2.fc37.x86_64 118/151
Running scriptlet: authselect-libs-1.4.0-3.fc37.x86_64 119/151
Installing : authselect-libs-1.4.0-3.fc37.x86_64 119/151
Installing : authselect-1.4.0-3.fc37.x86_64 120/151
Installing : cracklib-2.9.6-28.fc36.x86_64 121/151
Installing : libpwquality-1.4.4-11.fc37.x86_64 122/151
Installing : libnsl2-2.0.0-4.fc37.x86_64 123/151
Installing : pam-1.5.2-14.fc37.x86_64 124/151
Installing : libssh-0.9.6-5.fc37.x86_64 125/151
Installing : libarchive-3.6.1-2.fc37.x86_64 126/151
Installing : libevent-2.1.12-7.fc37.x86_64 127/151
Installing : openldap-2.6.2-4.fc37.x86_64 128/151
Installing : libcurl-7.84.0-2.fc37.x86_64 129/151
Installing : elfutils-libs-0.187-7.fc37.x86_64 130/151
Installing : elfutils-debuginfod-client-0.187-7.fc37.x86_64 131/151
Installing : binutils-gold-2.38-23.fc37.x86_64 132/151
Installing : binutils-2.38-23.fc37.x86_64 133/151
Running scriptlet: binutils-2.38-23.fc37.x86_64 133/151
Installing : elfutils-0.187-7.fc37.x86_64 134/151
Installing : gdb-minimal-12.1-4.fc37.x86_64 135/151
Installing : debugedit-5.0-5.fc37.x86_64 136/151
Installing : curl-7.84.0-2.fc37.x86_64 137/151
Installing : rpm-libs-4.18.0-0.beta1.4.fc37.x86_64 138/151
Running scriptlet: rpm-4.18.0-0.beta1.4.fc37.x86_64 139/151
Installing : rpm-4.18.0-0.beta1.4.fc37.x86_64 139/151
Installing : efi-srpm-macros-5-6.fc37.noarch 140/151
Installing : lua-srpm-macros-1-7.fc37.noarch 141/151
Installing : rpmautospec-rpm-macros-0.3.0-1.fc37.noarch 142/151
Installing : fonts-srpm-macros-1:2.0.5-8.fc37.noarch 143/151
Installing : go-srpm-macros-3.0.15-3.fc37.noarch 144/151
Installing : python-srpm-macros-3.11-4.fc37.noarch 145/151
Installing : redhat-rpm-config-226-1.fc37.noarch 146/151
Installing : rpm-build-libs-4.18.0-0.beta1.4.fc37.x86_64 147/151
Installing : rpm-build-4.18.0-0.beta1.4.fc37.x86_64 148/151
Installing : util-linux-2.38.1-1.fc37.x86_64 149/151
Installing : which-2.21-35.fc37.x86_64 150/151
Installing : info-6.8-4.fc37.x86_64 151/151
Running scriptlet: filesystem-3.18-1.fc37.x86_64 151/151
Running scriptlet: ca-certificates-2022.2.54-5.fc37.noarch 151/151
Running scriptlet: authselect-libs-1.4.0-3.fc37.x86_64 151/151
Running scriptlet: rpm-4.18.0-0.beta1.4.fc37.x86_64 151/151
Running scriptlet: info-6.8-4.fc37.x86_64 151/151
Verifying : bash-5.1.16-3.fc37.x86_64 1/151
Verifying : coreutils-9.1-6.fc37.x86_64 2/151
Verifying : coreutils-common-9.1-6.fc37.x86_64 3/151
Verifying : cpio-2.13-13.fc37.x86_64 4/151
Verifying : debugedit-5.0-5.fc37.x86_64 5/151
Verifying : diffutils-3.8-3.fc37.x86_64 6/151
Verifying : elfutils-0.187-7.fc37.x86_64 7/151
Verifying : elfutils-debuginfod-client-0.187-7.fc37.x86_64 8/151
Verifying : elfutils-default-yama-scope-0.187-7.fc37.noarch 9/151
Verifying : elfutils-libelf-0.187-7.fc37.x86_64 10/151
Verifying : elfutils-libs-0.187-7.fc37.x86_64 11/151
Verifying : grep-3.7-4.fc37.x86_64 12/151
Verifying : gzip-1.12-2.fc37.x86_64 13/151
Verifying : patch-2.7.6-17.fc37.x86_64 14/151
Verifying : sed-4.8-11.fc37.x86_64 15/151
Verifying : sqlite-libs-3.39.2-2.fc37.x86_64 16/151
Verifying : tar-2:1.34-4.fc37.x86_64 17/151
Verifying : alternatives-1.19-3.fc37.x86_64 18/151
Verifying : ansible-srpm-macros-1-6.fc37.noarch 19/151
Verifying : audit-libs-3.0.8-3.fc37.x86_64 20/151
Verifying : authselect-1.4.0-3.fc37.x86_64 21/151
Verifying : authselect-libs-1.4.0-3.fc37.x86_64 22/151
Verifying : basesystem-11-14.fc37.noarch 23/151
Verifying : binutils-2.38-23.fc37.x86_64 24/151
Verifying : binutils-gold-2.38-23.fc37.x86_64 25/151
Verifying : bzip2-1.0.8-12.fc37.x86_64 26/151
Verifying : bzip2-libs-1.0.8-12.fc37.x86_64 27/151
Verifying : ca-certificates-2022.2.54-5.fc37.noarch 28/151
Verifying : cracklib-2.9.6-28.fc36.x86_64 29/151
Verifying : crypto-policies-20220802-1.gita99dfd2.fc37.noarc 30/151
Verifying : curl-7.84.0-2.fc37.x86_64 31/151
Verifying : cyrus-sasl-lib-2.1.28-7.fc37.x86_64 32/151
Verifying : dwz-0.14-7.fc37.x86_64 33/151
Verifying : ed-1.18-2.fc37.x86_64 34/151
Verifying : efi-srpm-macros-5-6.fc37.noarch 35/151
Verifying : fedora-gpg-keys-37-0.3.noarch 36/151
Verifying : fedora-release-37-0.9.noarch 37/151
Verifying : fedora-release-common-37-0.9.noarch 38/151
Verifying : fedora-release-identity-basic-37-0.9.noarch 39/151
Verifying : fedora-repos-37-0.3.noarch 40/151
Verifying : fedora-repos-rawhide-37-0.3.noarch 41/151
Verifying : file-5.42-4.fc37.x86_64 42/151
Verifying : file-libs-5.42-4.fc37.x86_64 43/151
Verifying : filesystem-3.18-1.fc37.x86_64 44/151
Verifying : findutils-1:4.9.0-2.fc37.x86_64 45/151
Verifying : fonts-srpm-macros-1:2.0.5-8.fc37.noarch 46/151
Verifying : fpc-srpm-macros-1.3-6.fc37.noarch 47/151
Verifying : gawk-5.1.1-4.fc37.x86_64 48/151
Verifying : gdb-minimal-12.1-4.fc37.x86_64 49/151
Verifying : gdbm-libs-1:1.23-2.fc37.x86_64 50/151
Verifying : ghc-srpm-macros-1.5.0-7.fc37.noarch 51/151
Verifying : glibc-2.36-1.fc37.x86_64 52/151
Verifying : glibc-common-2.36-1.fc37.x86_64 53/151
Verifying : glibc-gconv-extra-2.36-1.fc37.x86_64 54/151
Verifying : glibc-minimal-langpack-2.36-1.fc37.x86_64 55/151
Verifying : gmp-1:6.2.1-3.fc37.x86_64 56/151
Verifying : gnat-srpm-macros-4-16.fc37.noarch 57/151
Verifying : go-srpm-macros-3.0.15-3.fc37.noarch 58/151
Verifying : info-6.8-4.fc37.x86_64 59/151
Verifying : kernel-srpm-macros-1.0-15.fc37.noarch 60/151
Verifying : keyutils-libs-1.6.1-5.fc37.x86_64 61/151
Verifying : krb5-libs-1.19.2-11.fc37.1.x86_64 62/151
Verifying : libacl-2.3.1-4.fc37.x86_64 63/151
Verifying : libarchive-3.6.1-2.fc37.x86_64 64/151
Verifying : libattr-2.5.1-5.fc37.x86_64 65/151
Verifying : libblkid-2.38.1-1.fc37.x86_64 66/151
Verifying : libbrotli-1.0.9-9.fc37.x86_64 67/151
Verifying : libcap-2.48-5.fc37.x86_64 68/151
Verifying : libcap-ng-0.8.3-3.fc37.x86_64 69/151
Verifying : libcom_err-1.46.5-3.fc37.x86_64 70/151
Verifying : libcurl-7.84.0-2.fc37.x86_64 71/151
Verifying : libdb-5.3.28-53.fc37.x86_64 72/151
Verifying : libeconf-0.4.0-4.fc37.x86_64 73/151
Verifying : libevent-2.1.12-7.fc37.x86_64 74/151
Verifying : libfdisk-2.38.1-1.fc37.x86_64 75/151
Verifying : libffi-3.4.2-9.fc37.x86_64 76/151
Verifying : libgcc-12.1.1-3.fc37.1.x86_64 77/151
Verifying : libgomp-12.1.1-3.fc37.1.x86_64 78/151
Verifying : libidn2-2.3.3-2.fc37.x86_64 79/151
Verifying : libmount-2.38.1-1.fc37.x86_64 80/151
Verifying : libnghttp2-1.48.0-2.fc37.x86_64 81/151
Verifying : libnsl2-2.0.0-4.fc37.x86_64 82/151
Verifying : libpkgconf-1.8.0-3.fc37.x86_64 83/151
Verifying : libpsl-0.21.1-6.fc37.x86_64 84/151
Verifying : libpwquality-1.4.4-11.fc37.x86_64 85/151
Verifying : libselinux-3.4-5.fc37.x86_64 86/151
Verifying : libsemanage-3.4-5.fc37.x86_64 87/151
Verifying : libsepol-3.4-3.fc37.x86_64 88/151
Verifying : libsigsegv-2.14-3.fc37.x86_64 89/151
Verifying : libsmartcols-2.38.1-1.fc37.x86_64 90/151
Verifying : libssh-0.9.6-5.fc37.x86_64 91/151
Verifying : libssh-config-0.9.6-5.fc37.noarch 92/151
Verifying : libstdc++-12.1.1-3.fc37.1.x86_64 93/151
Verifying : libtasn1-4.18.0-3.fc37.x86_64 94/151
Verifying : libtirpc-1.3.2-1.rc5.fc37.x86_64 95/151
Verifying : libunistring-1.0-2.fc37.x86_64 96/151
Verifying : libutempter-1.2.1-7.fc37.x86_64 97/151
Verifying : libuuid-2.38.1-1.fc37.x86_64 98/151
Verifying : libverto-0.3.2-4.fc37.x86_64 99/151
Verifying : libxcrypt-4.4.28-2.fc37.x86_64 100/151
Verifying : libxml2-2.9.14-3.fc37.x86_64 101/151
Verifying : libzstd-1.5.2-3.fc37.x86_64 102/151
Verifying : lua-libs-5.4.4-4.fc37.x86_64 103/151
Verifying : lua-srpm-macros-1-7.fc37.noarch 104/151
Verifying : lz4-libs-1.9.3-5.fc37.x86_64 105/151
Verifying : mpfr-4.1.0-10.fc37.x86_64 106/151
Verifying : ncurses-base-6.3-3.20220501.fc37.noarch 107/151
Verifying : ncurses-libs-6.3-3.20220501.fc37.x86_64 108/151
Verifying : nim-srpm-macros-3-7.fc37.noarch 109/151
Verifying : ocaml-srpm-macros-7-2.fc37.noarch 110/151
Verifying : openblas-srpm-macros-2-12.fc37.noarch 111/151
Verifying : openldap-2.6.2-4.fc37.x86_64 112/151
Verifying : openssl-libs-1:3.0.5-2.fc37.x86_64 113/151
Verifying : p11-kit-0.24.1-3.fc37.x86_64 114/151
Verifying : p11-kit-trust-0.24.1-3.fc37.x86_64 115/151
Verifying : package-notes-srpm-macros-0.4-16.fc37.noarch 116/151
Verifying : pam-1.5.2-14.fc37.x86_64 117/151
Verifying : pam-libs-1.5.2-14.fc37.x86_64 118/151
Verifying : pcre-8.45-1.fc37.2.x86_64 119/151
Verifying : pcre2-10.40-1.fc37.1.x86_64 120/151
Verifying : pcre2-syntax-10.40-1.fc37.1.noarch 121/151
Verifying : perl-srpm-macros-1-46.fc37.noarch 122/151
Verifying : pkgconf-1.8.0-3.fc37.x86_64 123/151
Verifying : pkgconf-m4-1.8.0-3.fc37.noarch 124/151
Verifying : pkgconf-pkg-config-1.8.0-3.fc37.x86_64 125/151
Verifying : popt-1.19~rc1-3.fc37.x86_64 126/151
Verifying : publicsuffix-list-dafsa-20210518-5.fc37.noarch 127/151
Verifying : python-srpm-macros-3.11-4.fc37.noarch 128/151
Verifying : qt5-srpm-macros-5.15.5-2.fc37.noarch 129/151
Verifying : readline-8.1-7.fc37.x86_64 130/151
Verifying : redhat-rpm-config-226-1.fc37.noarch 131/151
Verifying : rpm-4.18.0-0.beta1.4.fc37.x86_64 132/151
Verifying : rpm-build-4.18.0-0.beta1.4.fc37.x86_64 133/151
Verifying : rpm-build-libs-4.18.0-0.beta1.4.fc37.x86_64 134/151
Verifying : rpm-libs-4.18.0-0.beta1.4.fc37.x86_64 135/151
Verifying : rpmautospec-rpm-macros-0.3.0-1.fc37.noarch 136/151
Verifying : rust-srpm-macros-22-1.fc37.noarch 137/151
Verifying : setup-2.14.1-2.fc37.noarch 138/151
Verifying : shadow-utils-2:4.11.1-4.fc37.x86_64 139/151
Verifying : systemd-libs-251.3-2.fc37.x86_64 140/151
Verifying : tzdata-2022a-4.fc37.noarch 141/151
Verifying : unzip-6.0-58.fc37.x86_64 142/151
Verifying : util-linux-2.38.1-1.fc37.x86_64 143/151
Verifying : util-linux-core-2.38.1-1.fc37.x86_64 144/151
Verifying : which-2.21-35.fc37.x86_64 145/151
Verifying : xxhash-libs-0.8.1-3.fc37.x86_64 146/151
Verifying : xz-5.2.5-10.fc37.x86_64 147/151
Verifying : xz-libs-5.2.5-10.fc37.x86_64 148/151
Verifying : zip-3.0-33.fc37.x86_64 149/151
Verifying : zlib-1.2.12-4.fc37.x86_64 150/151
Verifying : zstd-1.5.2-3.fc37.x86_64 151/151
Installed:
alternatives-1.19-3.fc37.x86_64
ansible-srpm-macros-1-6.fc37.noarch
audit-libs-3.0.8-3.fc37.x86_64
authselect-1.4.0-3.fc37.x86_64
authselect-libs-1.4.0-3.fc37.x86_64
basesystem-11-14.fc37.noarch
bash-5.1.16-3.fc37.x86_64
binutils-2.38-23.fc37.x86_64
binutils-gold-2.38-23.fc37.x86_64
bzip2-1.0.8-12.fc37.x86_64
bzip2-libs-1.0.8-12.fc37.x86_64
ca-certificates-2022.2.54-5.fc37.noarch
coreutils-9.1-6.fc37.x86_64
coreutils-common-9.1-6.fc37.x86_64
cpio-2.13-13.fc37.x86_64
cracklib-2.9.6-28.fc36.x86_64
crypto-policies-20220802-1.gita99dfd2.fc37.noarch
curl-7.84.0-2.fc37.x86_64
cyrus-sasl-lib-2.1.28-7.fc37.x86_64
debugedit-5.0-5.fc37.x86_64
diffutils-3.8-3.fc37.x86_64
dwz-0.14-7.fc37.x86_64
ed-1.18-2.fc37.x86_64
efi-srpm-macros-5-6.fc37.noarch
elfutils-0.187-7.fc37.x86_64
elfutils-debuginfod-client-0.187-7.fc37.x86_64
elfutils-default-yama-scope-0.187-7.fc37.noarch
elfutils-libelf-0.187-7.fc37.x86_64
elfutils-libs-0.187-7.fc37.x86_64
fedora-gpg-keys-37-0.3.noarch
fedora-release-37-0.9.noarch
fedora-release-common-37-0.9.noarch
fedora-release-identity-basic-37-0.9.noarch
fedora-repos-37-0.3.noarch
fedora-repos-rawhide-37-0.3.noarch
file-5.42-4.fc37.x86_64
file-libs-5.42-4.fc37.x86_64
filesystem-3.18-1.fc37.x86_64
findutils-1:4.9.0-2.fc37.x86_64
fonts-srpm-macros-1:2.0.5-8.fc37.noarch
fpc-srpm-macros-1.3-6.fc37.noarch
gawk-5.1.1-4.fc37.x86_64
gdb-minimal-12.1-4.fc37.x86_64
gdbm-libs-1:1.23-2.fc37.x86_64
ghc-srpm-macros-1.5.0-7.fc37.noarch
glibc-2.36-1.fc37.x86_64
glibc-common-2.36-1.fc37.x86_64
glibc-gconv-extra-2.36-1.fc37.x86_64
glibc-minimal-langpack-2.36-1.fc37.x86_64
gmp-1:6.2.1-3.fc37.x86_64
gnat-srpm-macros-4-16.fc37.noarch
go-srpm-macros-3.0.15-3.fc37.noarch
grep-3.7-4.fc37.x86_64
gzip-1.12-2.fc37.x86_64
info-6.8-4.fc37.x86_64
kernel-srpm-macros-1.0-15.fc37.noarch
keyutils-libs-1.6.1-5.fc37.x86_64
krb5-libs-1.19.2-11.fc37.1.x86_64
libacl-2.3.1-4.fc37.x86_64
libarchive-3.6.1-2.fc37.x86_64
libattr-2.5.1-5.fc37.x86_64
libblkid-2.38.1-1.fc37.x86_64
libbrotli-1.0.9-9.fc37.x86_64
libcap-2.48-5.fc37.x86_64
libcap-ng-0.8.3-3.fc37.x86_64
libcom_err-1.46.5-3.fc37.x86_64
libcurl-7.84.0-2.fc37.x86_64
libdb-5.3.28-53.fc37.x86_64
libeconf-0.4.0-4.fc37.x86_64
libevent-2.1.12-7.fc37.x86_64
libfdisk-2.38.1-1.fc37.x86_64
libffi-3.4.2-9.fc37.x86_64
libgcc-12.1.1-3.fc37.1.x86_64
libgomp-12.1.1-3.fc37.1.x86_64
libidn2-2.3.3-2.fc37.x86_64
libmount-2.38.1-1.fc37.x86_64
libnghttp2-1.48.0-2.fc37.x86_64
libnsl2-2.0.0-4.fc37.x86_64
libpkgconf-1.8.0-3.fc37.x86_64
libpsl-0.21.1-6.fc37.x86_64
libpwquality-1.4.4-11.fc37.x86_64
libselinux-3.4-5.fc37.x86_64
libsemanage-3.4-5.fc37.x86_64
libsepol-3.4-3.fc37.x86_64
libsigsegv-2.14-3.fc37.x86_64
libsmartcols-2.38.1-1.fc37.x86_64
libssh-0.9.6-5.fc37.x86_64
libssh-config-0.9.6-5.fc37.noarch
libstdc++-12.1.1-3.fc37.1.x86_64
libtasn1-4.18.0-3.fc37.x86_64
libtirpc-1.3.2-1.rc5.fc37.x86_64
libunistring-1.0-2.fc37.x86_64
libutempter-1.2.1-7.fc37.x86_64
libuuid-2.38.1-1.fc37.x86_64
libverto-0.3.2-4.fc37.x86_64
libxcrypt-4.4.28-2.fc37.x86_64
libxml2-2.9.14-3.fc37.x86_64
libzstd-1.5.2-3.fc37.x86_64
lua-libs-5.4.4-4.fc37.x86_64
lua-srpm-macros-1-7.fc37.noarch
lz4-libs-1.9.3-5.fc37.x86_64
mpfr-4.1.0-10.fc37.x86_64
ncurses-base-6.3-3.20220501.fc37.noarch
ncurses-libs-6.3-3.20220501.fc37.x86_64
nim-srpm-macros-3-7.fc37.noarch
ocaml-srpm-macros-7-2.fc37.noarch
openblas-srpm-macros-2-12.fc37.noarch
openldap-2.6.2-4.fc37.x86_64
openssl-libs-1:3.0.5-2.fc37.x86_64
p11-kit-0.24.1-3.fc37.x86_64
p11-kit-trust-0.24.1-3.fc37.x86_64
package-notes-srpm-macros-0.4-16.fc37.noarch
pam-1.5.2-14.fc37.x86_64
pam-libs-1.5.2-14.fc37.x86_64
patch-2.7.6-17.fc37.x86_64
pcre-8.45-1.fc37.2.x86_64
pcre2-10.40-1.fc37.1.x86_64
pcre2-syntax-10.40-1.fc37.1.noarch
perl-srpm-macros-1-46.fc37.noarch
pkgconf-1.8.0-3.fc37.x86_64
pkgconf-m4-1.8.0-3.fc37.noarch
pkgconf-pkg-config-1.8.0-3.fc37.x86_64
popt-1.19~rc1-3.fc37.x86_64
publicsuffix-list-dafsa-20210518-5.fc37.noarch
python-srpm-macros-3.11-4.fc37.noarch
qt5-srpm-macros-5.15.5-2.fc37.noarch
readline-8.1-7.fc37.x86_64
redhat-rpm-config-226-1.fc37.noarch
rpm-4.18.0-0.beta1.4.fc37.x86_64
rpm-build-4.18.0-0.beta1.4.fc37.x86_64
rpm-build-libs-4.18.0-0.beta1.4.fc37.x86_64
rpm-libs-4.18.0-0.beta1.4.fc37.x86_64
rpmautospec-rpm-macros-0.3.0-1.fc37.noarch
rust-srpm-macros-22-1.fc37.noarch
sed-4.8-11.fc37.x86_64
setup-2.14.1-2.fc37.noarch
shadow-utils-2:4.11.1-4.fc37.x86_64
sqlite-libs-3.39.2-2.fc37.x86_64
systemd-libs-251.3-2.fc37.x86_64
tar-2:1.34-4.fc37.x86_64
tzdata-2022a-4.fc37.noarch
unzip-6.0-58.fc37.x86_64
util-linux-2.38.1-1.fc37.x86_64
util-linux-core-2.38.1-1.fc37.x86_64
which-2.21-35.fc37.x86_64
xxhash-libs-0.8.1-3.fc37.x86_64
xz-5.2.5-10.fc37.x86_64
xz-libs-5.2.5-10.fc37.x86_64
zip-3.0-33.fc37.x86_64
zlib-1.2.12-4.fc37.x86_64
zstd-1.5.2-3.fc37.x86_64
Complete!
Finish: dnf install
Start: creating root cache
Finish: creating root cache
Finish: chroot init
INFO: Installed packages:
INFO: libssh-config-0.9.6-5.fc37.noarch
libcap-ng-0.8.3-3.fc37.x86_64
ed-1.18-2.fc37.x86_64
patch-2.7.6-17.fc37.x86_64
ncurses-libs-6.3-3.20220501.fc37.x86_64
libnghttp2-1.48.0-2.fc37.x86_64
shadow-utils-4.11.1-4.fc37.x86_64
libpwquality-1.4.4-11.fc37.x86_64
glibc-2.36-1.fc37.x86_64
libarchive-3.6.1-2.fc37.x86_64
fpc-srpm-macros-1.3-6.fc37.noarch
pcre-8.45-1.fc37.2.x86_64
cpio-2.13-13.fc37.x86_64
gnat-srpm-macros-4-16.fc37.noarch
coreutils-9.1-6.fc37.x86_64
libssh-0.9.6-5.fc37.x86_64
elfutils-libelf-0.187-7.fc37.x86_64
libcom_err-1.46.5-3.fc37.x86_64
pam-1.5.2-14.fc37.x86_64
authselect-1.4.0-3.fc37.x86_64
info-6.8-4.fc37.x86_64
libidn2-2.3.3-2.fc37.x86_64
kernel-srpm-macros-1.0-15.fc37.noarch
audit-libs-3.0.8-3.fc37.x86_64
readline-8.1-7.fc37.x86_64
file-libs-5.42-4.fc37.x86_64
curl-7.84.0-2.fc37.x86_64
rpm-build-libs-4.18.0-0.beta1.4.fc37.x86_64
fedora-release-identity-basic-37-0.9.noarch
xz-libs-5.2.5-10.fc37.x86_64
openldap-2.6.2-4.fc37.x86_64
libblkid-2.38.1-1.fc37.x86_64
rpmautospec-rpm-macros-0.3.0-1.fc37.noarch
ansible-srpm-macros-1-6.fc37.noarch
elfutils-0.187-7.fc37.x86_64
qt5-srpm-macros-5.15.5-2.fc37.noarch
zstd-1.5.2-3.fc37.x86_64
bash-5.1.16-3.fc37.x86_64
libpkgconf-1.8.0-3.fc37.x86_64
which-2.21-35.fc37.x86_64
libsmartcols-2.38.1-1.fc37.x86_64
pcre2-syntax-10.40-1.fc37.1.noarch
cracklib-2.9.6-28.fc36.x86_64
filesystem-3.18-1.fc37.x86_64
p11-kit-trust-0.24.1-3.fc37.x86_64
fedora-release-common-37-0.9.noarch
libzstd-1.5.2-3.fc37.x86_64
perl-srpm-macros-1-46.fc37.noarch
libxml2-2.9.14-3.fc37.x86_64
libnsl2-2.0.0-4.fc37.x86_64
ocaml-srpm-macros-7-2.fc37.noarch
libsepol-3.4-3.fc37.x86_64
unzip-6.0-58.fc37.x86_64
package-notes-srpm-macros-0.4-16.fc37.noarch
coreutils-common-9.1-6.fc37.x86_64
rpm-4.18.0-0.beta1.4.fc37.x86_64
lz4-libs-1.9.3-5.fc37.x86_64
systemd-libs-251.3-2.fc37.x86_64
efi-srpm-macros-5-6.fc37.noarch
ca-certificates-2022.2.54-5.fc37.noarch
fedora-release-37-0.9.noarch
file-5.42-4.fc37.x86_64
xz-5.2.5-10.fc37.x86_64
sed-4.8-11.fc37.x86_64
setup-2.14.1-2.fc37.noarch
libsigsegv-2.14-3.fc37.x86_64
krb5-libs-1.19.2-11.fc37.1.x86_64
fedora-repos-rawhide-37-0.3.noarch
libunistring-1.0-2.fc37.x86_64
lua-libs-5.4.4-4.fc37.x86_64
ghc-srpm-macros-1.5.0-7.fc37.noarch
elfutils-libs-0.187-7.fc37.x86_64
glibc-minimal-langpack-2.36-1.fc37.x86_64
basesystem-11-14.fc37.noarch
keyutils-libs-1.6.1-5.fc37.x86_64
ncurses-base-6.3-3.20220501.fc37.noarch
fedora-gpg-keys-37-0.3.noarch
glibc-gconv-extra-2.36-1.fc37.x86_64
libtasn1-4.18.0-3.fc37.x86_64
pcre2-10.40-1.fc37.1.x86_64
gpg-pubkey-38ab71f4-60242b08
binutils-gold-2.38-23.fc37.x86_64
pam-libs-1.5.2-14.fc37.x86_64
xxhash-libs-0.8.1-3.fc37.x86_64
sqlite-libs-3.39.2-2.fc37.x86_64
findutils-4.9.0-2.fc37.x86_64
fedora-repos-37-0.3.noarch
libacl-2.3.1-4.fc37.x86_64
libuuid-2.38.1-1.fc37.x86_64
libutempter-1.2.1-7.fc37.x86_64
libevent-2.1.12-7.fc37.x86_64
elfutils-debuginfod-client-0.187-7.fc37.x86_64
go-srpm-macros-3.0.15-3.fc37.noarch
rpm-build-4.18.0-0.beta1.4.fc37.x86_64
gpg-pubkey-5323552a-6112bcdc
crypto-policies-20220802-1.gita99dfd2.fc37.noarch
rpm-libs-4.18.0-0.beta1.4.fc37.x86_64
util-linux-2.38.1-1.fc37.x86_64
alternatives-1.19-3.fc37.x86_64
gmp-6.2.1-3.fc37.x86_64
pkgconf-1.8.0-3.fc37.x86_64
python-srpm-macros-3.11-4.fc37.noarch
elfutils-default-yama-scope-0.187-7.fc37.noarch
tzdata-2022a-4.fc37.noarch
openssl-libs-3.0.5-2.fc37.x86_64
redhat-rpm-config-226-1.fc37.noarch
libcap-2.48-5.fc37.x86_64
gdb-minimal-12.1-4.fc37.x86_64
libtirpc-1.3.2-1.rc5.fc37.x86_64
libverto-0.3.2-4.fc37.x86_64
libgcc-12.1.1-3.fc37.1.x86_64
rust-srpm-macros-22-1.fc37.noarch
tar-1.34-4.fc37.x86_64
zlib-1.2.12-4.fc37.x86_64
libstdc++-12.1.1-3.fc37.1.x86_64
gdbm-libs-1.23-2.fc37.x86_64
bzip2-libs-1.0.8-12.fc37.x86_64
debugedit-5.0-5.fc37.x86_64
glibc-common-2.36-1.fc37.x86_64
libbrotli-1.0.9-9.fc37.x86_64
libselinux-3.4-5.fc37.x86_64
util-linux-core-2.38.1-1.fc37.x86_64
openblas-srpm-macros-2-12.fc37.noarch
diffutils-3.8-3.fc37.x86_64
binutils-2.38-23.fc37.x86_64
libgomp-12.1.1-3.fc37.1.x86_64
libxcrypt-4.4.28-2.fc37.x86_64
libmount-2.38.1-1.fc37.x86_64
libcurl-7.84.0-2.fc37.x86_64
mpfr-4.1.0-10.fc37.x86_64
bzip2-1.0.8-12.fc37.x86_64
nim-srpm-macros-3-7.fc37.noarch
zip-3.0-33.fc37.x86_64
publicsuffix-list-dafsa-20210518-5.fc37.noarch
libeconf-0.4.0-4.fc37.x86_64
p11-kit-0.24.1-3.fc37.x86_64
libsemanage-3.4-5.fc37.x86_64
libpsl-0.21.1-6.fc37.x86_64
fonts-srpm-macros-2.0.5-8.fc37.noarch
libfdisk-2.38.1-1.fc37.x86_64
popt-1.19~rc1-3.fc37.x86_64
libattr-2.5.1-5.fc37.x86_64
cyrus-sasl-lib-2.1.28-7.fc37.x86_64
libffi-3.4.2-9.fc37.x86_64
gawk-5.1.1-4.fc37.x86_64
dwz-0.14-7.fc37.x86_64
libdb-5.3.28-53.fc37.x86_64
pkgconf-m4-1.8.0-3.fc37.noarch
gzip-1.12-2.fc37.x86_64
pkgconf-pkg-config-1.8.0-3.fc37.x86_64
lua-srpm-macros-1-7.fc37.noarch
grep-3.7-4.fc37.x86_64
authselect-libs-1.4.0-3.fc37.x86_64
Start: buildsrpm
Start: rpmbuild -bs
sh: line 1: /usr/bin/perl: No such file or directory
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1659916800
Wrote: /builddir/build/SRPMS/bionetgen-2.8.4-1.fc37.src.rpm
Finish: rpmbuild -bs
INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-x86_64-1660140575.154331/root/var/log/dnf.rpm.log
/var/lib/mock/fedora-rawhide-x86_64-1660140575.154331/root/var/log/dnf.librepo.log
/var/lib/mock/fedora-rawhide-x86_64-1660140575.154331/root/var/log/dnf.log
Finish: buildsrpm
INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-2p2vbtav/bionetgen/bionetgen.spec) Config(child) 1 minutes 17 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
Finish: run
Running (timeout=108000): unbuffer mock --rebuild /var/lib/copr-rpmbuild/results/bionetgen-2.8.4-1.fc37.src.rpm --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1660140575.154331 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
INFO: mock.py version 3.1 starting (python version = 3.10.4, NVR = mock-3.1-1.fc35)...
Start(bootstrap): init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish(bootstrap): init plugins
Start: init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish: init plugins
INFO: Signal handler active
Start: run
INFO: Start(/var/lib/copr-rpmbuild/results/bionetgen-2.8.4-1.fc37.src.rpm) Config(fedora-rawhide-x86_64)
Start: clean chroot
Finish: clean chroot
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1660140575.154331/root.
INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1660140575.154331/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
INFO: enabled HW Info plugin
Mock Version: 3.1
INFO: Mock Version: 3.1
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1660140575.154331/root.
INFO: calling preinit hooks
INFO: enabled root cache
Start: unpacking root cache
Finish: unpacking root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
Mock Version: 3.1
INFO: Mock Version: 3.1
Start: dnf update
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Copr repository 56 kB/s | 3.0 kB 00:00
Copr repository 5.3 MB/s | 1.7 MB 00:00
fedora 189 kB/s | 17 kB 00:00
Dependencies resolved.
Nothing to do.
Complete!
Finish: dnf update
Finish: chroot init
Start: build phase for bionetgen-2.8.4-1.fc37.src.rpm
Start: build setup for bionetgen-2.8.4-1.fc37.src.rpm
sh: line 1: /usr/bin/perl: No such file or directory
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1659916800
Wrote: /builddir/build/SRPMS/bionetgen-2.8.4-1.fc37.src.rpm
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Copr repository 61 kB/s | 3.0 kB 00:00
Copr repository 10 MB/s | 1.7 MB 00:00
fedora 181 kB/s | 17 kB 00:00
Dependencies resolved.
================================================================================
Package Arch Version Repository Size
================================================================================
Installing:
autoconf noarch 2.71-3.fc37 fedora 733 k
automake noarch 1.16.5-9.fc37 copr_base 675 k
gcc x86_64 12.1.1-3.fc37.1 fedora 33 M
gcc-c++ x86_64 12.1.1-3.fc37.1 fedora 13 M
gcc-gfortran x86_64 12.1.1-3.fc37.1 fedora 12 M
libtool x86_64 2.4.7-2.fc37 copr_base 595 k
make x86_64 1:4.3-11.fc37 copr_base 535 k
muParser-devel x86_64 2.3.2-5.fc37 fedora 26 k
perl-Carp noarch 1.52-489.fc37 fedora 29 k
perl-Class-Struct noarch 0.66-491.fc37 fedora 26 k
perl-Data-Dumper x86_64 2.184-490.fc37 fedora 56 k
perl-Exporter noarch 5.77-489.fc37 fedora 31 k
perl-File-Basename noarch 2.85-491.fc37 fedora 22 k
perl-FindBin noarch 1.53-491.fc37 fedora 18 k
perl-Getopt-Long noarch 1:2.52-489.fc37 fedora 60 k
perl-IO x86_64 1.50-491.fc37 fedora 96 k
perl-IPC-Open3 noarch 1.22-491.fc37 fedora 27 k
perl-Math-Complex noarch 1.59-491.fc37 fedora 51 k
perl-POSIX x86_64 2.03-491.fc37 fedora 102 k
perl-PathTools x86_64 3.84-489.fc37 fedora 89 k
perl-Scalar-List-Utils x86_64 5:1.62-489.fc37 fedora 72 k
perl-Symbol noarch 1.09-491.fc37 fedora 19 k
perl-constant noarch 1.33-490.fc37 fedora 23 k
perl-generators noarch 1.13-8.fc37 fedora 16 k
perl-interpreter x86_64 4:5.36.0-491.fc37 fedora 76 k
perl-lib x86_64 0.65-491.fc37 fedora 19 k
perl-libs x86_64 4:5.36.0-491.fc37 fedora 2.2 M
perl-vars noarch 1.05-491.fc37 fedora 17 k
Installing dependencies:
annobin-docs noarch 10.79-1.fc37 fedora 92 k
annobin-plugin-gcc x86_64 10.79-1.fc37 fedora 883 k
cpp x86_64 12.1.1-3.fc37.1 fedora 11 M
emacs-filesystem noarch 1:28.1-3.fc37 copr_base 10 k
gc x86_64 8.0.6-4.fc37 fedora 103 k
gcc-plugin-annobin x86_64 12.1.1-3.fc37.1 fedora 50 k
glibc-devel x86_64 2.36-1.fc37 fedora 96 k
glibc-headers-x86 noarch 2.36-1.fc37 fedora 574 k
groff-base x86_64 1.22.4-10.fc37 fedora 1.1 M
guile22 x86_64 2.2.7-6.fc37 fedora 6.5 M
kernel-headers x86_64 5.19.0-1.fc37 fedora 1.5 M
libgfortran x86_64 12.1.1-3.fc37.1 fedora 897 k
libmpc x86_64 1.2.1-5.fc37 fedora 61 k
libquadmath x86_64 12.1.1-3.fc37.1 fedora 198 k
libquadmath-devel x86_64 12.1.1-3.fc37.1 fedora 39 k
libstdc++-devel x86_64 12.1.1-3.fc37.1 fedora 2.5 M
libtool-ltdl x86_64 2.4.7-2.fc37 copr_base 37 k
libxcrypt-devel x86_64 4.4.28-2.fc37 fedora 28 k
m4 x86_64 1.4.19-4.fc37 copr_base 296 k
muParser x86_64 2.3.2-5.fc37 fedora 153 k
ncurses x86_64 6.3-3.20220501.fc37 fedora 409 k
perl-B x86_64 1.83-491.fc37 fedora 186 k
perl-DynaLoader x86_64 1.52-491.fc37 fedora 30 k
perl-Encode x86_64 4:3.19-491.fc37 fedora 1.7 M
perl-Errno x86_64 1.36-491.fc37 fedora 19 k
perl-Fcntl x86_64 1.15-491.fc37 fedora 25 k
perl-Fedora-VSP noarch 0.001-29.fc37 fedora 23 k
perl-File-Compare noarch 1.100.700-491.fc37 fedora 18 k
perl-File-Copy noarch 2.39-491.fc37 fedora 24 k
perl-File-Find noarch 1.40-491.fc37 fedora 30 k
perl-File-Path noarch 2.18-489.fc37 fedora 35 k
perl-File-Temp noarch 1:0.231.100-489.fc37 fedora 59 k
perl-File-stat noarch 1.12-491.fc37 fedora 22 k
perl-Getopt-Std noarch 1.13-491.fc37 fedora 20 k
perl-HTTP-Tiny noarch 0.082-1.fc37 fedora 55 k
perl-MIME-Base64 x86_64 3.16-489.fc37 fedora 30 k
perl-Pod-Escapes noarch 1:1.07-489.fc37 fedora 20 k
perl-Pod-Perldoc noarch 3.28.01-490.fc37 fedora 90 k
perl-Pod-Simple noarch 1:3.43-490.fc37 fedora 225 k
perl-Pod-Usage noarch 4:2.03-3.fc37 fedora 40 k
perl-SelectSaver noarch 1.02-491.fc37 fedora 16 k
perl-Socket x86_64 4:2.035-2.fc37 fedora 55 k
perl-Storable x86_64 1:3.26-489.fc37 fedora 97 k
perl-Term-ANSIColor noarch 5.01-490.fc37 fedora 48 k
perl-Term-Cap noarch 1.17-489.fc37 fedora 22 k
perl-Text-ParseWords noarch 3.31-489.fc37 fedora 16 k
perl-Text-Tabs+Wrap noarch 2021.0814-489.fc37 fedora 22 k
perl-Thread-Queue noarch 3.14-489.fc37 fedora 21 k
perl-Time-Local noarch 2:1.300-489.fc37 fedora 33 k
perl-if noarch 0.61.000-491.fc37 fedora 18 k
perl-macros noarch 4:5.36.0-491.fc37 fedora 16 k
perl-mro x86_64 1.26-491.fc37 fedora 33 k
perl-overload noarch 1.35-491.fc37 fedora 50 k
perl-overloading noarch 0.02-491.fc37 fedora 17 k
perl-parent noarch 1:0.238-489.fc37 fedora 14 k
perl-podlators noarch 1:4.14-489.fc37 fedora 116 k
perl-subs noarch 1.04-491.fc37 fedora 16 k
perl-threads x86_64 1:2.27-489.fc37 fedora 57 k
perl-threads-shared x86_64 1.64-489.fc37 fedora 44 k
Transaction Summary
================================================================================
Install 87 Packages
Total size: 92 M
Total download size: 13 M
Installed size: 295 M
Downloading Packages:
[SKIPPED] automake-1.16.5-9.fc37.noarch.rpm: Already downloaded
[SKIPPED] emacs-filesystem-28.1-3.fc37.noarch.rpm: Already downloaded
[SKIPPED] libtool-2.4.7-2.fc37.x86_64.rpm: Already downloaded
[SKIPPED] libtool-ltdl-2.4.7-2.fc37.x86_64.rpm: Already downloaded
[SKIPPED] m4-1.4.19-4.fc37.x86_64.rpm: Already downloaded
[SKIPPED] make-4.3-11.fc37.x86_64.rpm: Already downloaded
[SKIPPED] annobin-docs-10.79-1.fc37.noarch.rpm: Already downloaded
[SKIPPED] annobin-plugin-gcc-10.79-1.fc37.x86_64.rpm: Already downloaded
[SKIPPED] autoconf-2.71-3.fc37.noarch.rpm: Already downloaded
[SKIPPED] cpp-12.1.1-3.fc37.1.x86_64.rpm: Already downloaded
[SKIPPED] gc-8.0.6-4.fc37.x86_64.rpm: Already downloaded
[SKIPPED] gcc-12.1.1-3.fc37.1.x86_64.rpm: Already downloaded
[SKIPPED] gcc-c++-12.1.1-3.fc37.1.x86_64.rpm: Already downloaded
[SKIPPED] gcc-plugin-annobin-12.1.1-3.fc37.1.x86_64.rpm: Already downloaded
[SKIPPED] glibc-devel-2.36-1.fc37.x86_64.rpm: Already downloaded
[SKIPPED] glibc-headers-x86-2.36-1.fc37.noarch.rpm: Already downloaded
[SKIPPED] groff-base-1.22.4-10.fc37.x86_64.rpm: Already downloaded
[SKIPPED] guile22-2.2.7-6.fc37.x86_64.rpm: Already downloaded
[SKIPPED] kernel-headers-5.19.0-1.fc37.x86_64.rpm: Already downloaded
[SKIPPED] libmpc-1.2.1-5.fc37.x86_64.rpm: Already downloaded
[SKIPPED] libstdc++-devel-12.1.1-3.fc37.1.x86_64.rpm: Already downloaded
[SKIPPED] libxcrypt-devel-4.4.28-2.fc37.x86_64.rpm: Already downloaded
[SKIPPED] ncurses-6.3-3.20220501.fc37.x86_64.rpm: Already downloaded
[SKIPPED] perl-B-1.83-491.fc37.x86_64.rpm: Already downloaded
[SKIPPED] perl-Carp-1.52-489.fc37.noarch.rpm: Already downloaded
[SKIPPED] perl-Class-Struct-0.66-491.fc37.noarch.rpm: Already downloaded
[SKIPPED] perl-Data-Dumper-2.184-490.fc37.x86_64.rpm: Already downloaded
[SKIPPED] perl-DynaLoader-1.52-491.fc37.x86_64.rpm: Already downloaded
[SKIPPED] perl-Encode-3.19-491.fc37.x86_64.rpm: Already downloaded
[SKIPPED] perl-Errno-1.36-491.fc37.x86_64.rpm: Already downloaded
[SKIPPED] perl-Exporter-5.77-489.fc37.noarch.rpm: Already downloaded
[SKIPPED] perl-Fcntl-1.15-491.fc37.x86_64.rpm: Already downloaded
[SKIPPED] perl-File-Basename-2.85-491.fc37.noarch.rpm: Already downloaded
[SKIPPED] perl-File-Compare-1.100.700-491.fc37.noarch.rpm: Already downloaded
[SKIPPED] perl-File-Copy-2.39-491.fc37.noarch.rpm: Already downloaded
[SKIPPED] perl-File-Find-1.40-491.fc37.noarch.rpm: Already downloaded
[SKIPPED] perl-File-Path-2.18-489.fc37.noarch.rpm: Already downloaded
[SKIPPED] perl-File-Temp-0.231.100-489.fc37.noarch.rpm: Already downloaded
[SKIPPED] perl-File-stat-1.12-491.fc37.noarch.rpm: Already downloaded
[SKIPPED] perl-Getopt-Long-2.52-489.fc37.noarch.rpm: Already downloaded
[SKIPPED] perl-Getopt-Std-1.13-491.fc37.noarch.rpm: Already downloaded
[SKIPPED] perl-HTTP-Tiny-0.082-1.fc37.noarch.rpm: Already downloaded
[SKIPPED] perl-IO-1.50-491.fc37.x86_64.rpm: Already downloaded
[SKIPPED] perl-IPC-Open3-1.22-491.fc37.noarch.rpm: Already downloaded
[SKIPPED] perl-MIME-Base64-3.16-489.fc37.x86_64.rpm: Already downloaded
[SKIPPED] perl-POSIX-2.03-491.fc37.x86_64.rpm: Already downloaded
[SKIPPED] perl-PathTools-3.84-489.fc37.x86_64.rpm: Already downloaded
[SKIPPED] perl-Pod-Escapes-1.07-489.fc37.noarch.rpm: Already downloaded
[SKIPPED] perl-Pod-Perldoc-3.28.01-490.fc37.noarch.rpm: Already downloaded
[SKIPPED] perl-Pod-Simple-3.43-490.fc37.noarch.rpm: Already downloaded
[SKIPPED] perl-Pod-Usage-2.03-3.fc37.noarch.rpm: Already downloaded
[SKIPPED] perl-Scalar-List-Utils-1.62-489.fc37.x86_64.rpm: Already downloaded
[SKIPPED] perl-SelectSaver-1.02-491.fc37.noarch.rpm: Already downloaded
[SKIPPED] perl-Socket-2.035-2.fc37.x86_64.rpm: Already downloaded
[SKIPPED] perl-Storable-3.26-489.fc37.x86_64.rpm: Already downloaded
[SKIPPED] perl-Symbol-1.09-491.fc37.noarch.rpm: Already downloaded
[SKIPPED] perl-Term-ANSIColor-5.01-490.fc37.noarch.rpm: Already downloaded
[SKIPPED] perl-Term-Cap-1.17-489.fc37.noarch.rpm: Already downloaded
[SKIPPED] perl-Text-ParseWords-3.31-489.fc37.noarch.rpm: Already downloaded
[SKIPPED] perl-Text-Tabs+Wrap-2021.0814-489.fc37.noarch.rpm: Already downloaded
[SKIPPED] perl-Thread-Queue-3.14-489.fc37.noarch.rpm: Already downloaded
[SKIPPED] perl-Time-Local-1.300-489.fc37.noarch.rpm: Already downloaded
[SKIPPED] perl-constant-1.33-490.fc37.noarch.rpm: Already downloaded
[SKIPPED] perl-if-0.61.000-491.fc37.noarch.rpm: Already downloaded
[SKIPPED] perl-interpreter-5.36.0-491.fc37.x86_64.rpm: Already downloaded
[SKIPPED] perl-libs-5.36.0-491.fc37.x86_64.rpm: Already downloaded
[SKIPPED] perl-mro-1.26-491.fc37.x86_64.rpm: Already downloaded
[SKIPPED] perl-overload-1.35-491.fc37.noarch.rpm: Already downloaded
[SKIPPED] perl-overloading-0.02-491.fc37.noarch.rpm: Already downloaded
[SKIPPED] perl-parent-0.238-489.fc37.noarch.rpm: Already downloaded
[SKIPPED] perl-podlators-4.14-489.fc37.noarch.rpm: Already downloaded
[SKIPPED] perl-subs-1.04-491.fc37.noarch.rpm: Already downloaded
[SKIPPED] perl-threads-2.27-489.fc37.x86_64.rpm: Already downloaded
[SKIPPED] perl-threads-shared-1.64-489.fc37.x86_64.rpm: Already downloaded
[SKIPPED] perl-vars-1.05-491.fc37.noarch.rpm: Already downloaded
(76/87): libquadmath-12.1.1-3.fc37.1.x86_64.rpm 1.7 MB/s | 198 kB 00:00
(77/87): libgfortran-12.1.1-3.fc37.1.x86_64.rpm 6.6 MB/s | 897 kB 00:00
(78/87): libquadmath-devel-12.1.1-3.fc37.1.x86_ 2.5 MB/s | 39 kB 00:00
(79/87): gcc-gfortran-12.1.1-3.fc37.1.x86_64.rp 59 MB/s | 12 MB 00:00
(80/87): muParser-devel-2.3.2-5.fc37.x86_64.rpm 405 kB/s | 26 kB 00:00
(81/87): muParser-2.3.2-5.fc37.x86_64.rpm 2.1 MB/s | 153 kB 00:00
(82/87): perl-Fedora-VSP-0.001-29.fc37.noarch.r 4.6 MB/s | 23 kB 00:00
(83/87): perl-Math-Complex-1.59-491.fc37.noarch 11 MB/s | 51 kB 00:00
(84/87): perl-FindBin-1.53-491.fc37.noarch.rpm 2.8 MB/s | 18 kB 00:00
(85/87): perl-generators-1.13-8.fc37.noarch.rpm 2.8 MB/s | 16 kB 00:00
(86/87): perl-lib-0.65-491.fc37.x86_64.rpm 4.2 MB/s | 19 kB 00:00
(87/87): perl-macros-5.36.0-491.fc37.noarch.rpm 3.5 MB/s | 16 kB 00:00
--------------------------------------------------------------------------------
Total 23 MB/s | 13 MB 00:00
Running transaction check
Transaction check succeeded.
Running transaction test
Transaction test succeeded.
Running transaction
Preparing : 1/1
Installing : libmpc-1.2.1-5.fc37.x86_64 1/87
Installing : libquadmath-12.1.1-3.fc37.1.x86_64 2/87
Installing : libgfortran-12.1.1-3.fc37.1.x86_64 3/87
Installing : cpp-12.1.1-3.fc37.1.x86_64 4/87
Installing : ncurses-6.3-3.20220501.fc37.x86_64 5/87
Installing : muParser-2.3.2-5.fc37.x86_64 6/87
Installing : libstdc++-devel-12.1.1-3.fc37.1.x86_64 7/87
Installing : kernel-headers-5.19.0-1.fc37.x86_64 8/87
Running scriptlet: groff-base-1.22.4-10.fc37.x86_64 9/87
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Installing : perl-Text-Tabs+Wrap-2021.0814-489.fc37.noarch 10/87
Installing : perl-if-0.61.000-491.fc37.noarch 11/87
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Installing : perl-File-Copy-2.39-491.fc37.noarch 62/87
Installing : perl-File-Find-1.40-491.fc37.noarch 63/87
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Verifying : perl-File-Basename-2.85-491.fc37.noarch 40/87
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Verifying : perl-Thread-Queue-3.14-489.fc37.noarch 70/87
Verifying : perl-Time-Local-2:1.300-489.fc37.noarch 71/87
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Installed:
annobin-docs-10.79-1.fc37.noarch
annobin-plugin-gcc-10.79-1.fc37.x86_64
autoconf-2.71-3.fc37.noarch
automake-1.16.5-9.fc37.noarch
cpp-12.1.1-3.fc37.1.x86_64
emacs-filesystem-1:28.1-3.fc37.noarch
gc-8.0.6-4.fc37.x86_64
gcc-12.1.1-3.fc37.1.x86_64
gcc-c++-12.1.1-3.fc37.1.x86_64
gcc-gfortran-12.1.1-3.fc37.1.x86_64
gcc-plugin-annobin-12.1.1-3.fc37.1.x86_64
glibc-devel-2.36-1.fc37.x86_64
glibc-headers-x86-2.36-1.fc37.noarch
groff-base-1.22.4-10.fc37.x86_64
guile22-2.2.7-6.fc37.x86_64
kernel-headers-5.19.0-1.fc37.x86_64
libgfortran-12.1.1-3.fc37.1.x86_64
libmpc-1.2.1-5.fc37.x86_64
libquadmath-12.1.1-3.fc37.1.x86_64
libquadmath-devel-12.1.1-3.fc37.1.x86_64
libstdc++-devel-12.1.1-3.fc37.1.x86_64
libtool-2.4.7-2.fc37.x86_64
libtool-ltdl-2.4.7-2.fc37.x86_64
libxcrypt-devel-4.4.28-2.fc37.x86_64
m4-1.4.19-4.fc37.x86_64
make-1:4.3-11.fc37.x86_64
muParser-2.3.2-5.fc37.x86_64
muParser-devel-2.3.2-5.fc37.x86_64
ncurses-6.3-3.20220501.fc37.x86_64
perl-B-1.83-491.fc37.x86_64
perl-Carp-1.52-489.fc37.noarch
perl-Class-Struct-0.66-491.fc37.noarch
perl-Data-Dumper-2.184-490.fc37.x86_64
perl-DynaLoader-1.52-491.fc37.x86_64
perl-Encode-4:3.19-491.fc37.x86_64
perl-Errno-1.36-491.fc37.x86_64
perl-Exporter-5.77-489.fc37.noarch
perl-Fcntl-1.15-491.fc37.x86_64
perl-Fedora-VSP-0.001-29.fc37.noarch
perl-File-Basename-2.85-491.fc37.noarch
perl-File-Compare-1.100.700-491.fc37.noarch
perl-File-Copy-2.39-491.fc37.noarch
perl-File-Find-1.40-491.fc37.noarch
perl-File-Path-2.18-489.fc37.noarch
perl-File-Temp-1:0.231.100-489.fc37.noarch
perl-File-stat-1.12-491.fc37.noarch
perl-FindBin-1.53-491.fc37.noarch
perl-Getopt-Long-1:2.52-489.fc37.noarch
perl-Getopt-Std-1.13-491.fc37.noarch
perl-HTTP-Tiny-0.082-1.fc37.noarch
perl-IO-1.50-491.fc37.x86_64
perl-IPC-Open3-1.22-491.fc37.noarch
perl-MIME-Base64-3.16-489.fc37.x86_64
perl-Math-Complex-1.59-491.fc37.noarch
perl-POSIX-2.03-491.fc37.x86_64
perl-PathTools-3.84-489.fc37.x86_64
perl-Pod-Escapes-1:1.07-489.fc37.noarch
perl-Pod-Perldoc-3.28.01-490.fc37.noarch
perl-Pod-Simple-1:3.43-490.fc37.noarch
perl-Pod-Usage-4:2.03-3.fc37.noarch
perl-Scalar-List-Utils-5:1.62-489.fc37.x86_64
perl-SelectSaver-1.02-491.fc37.noarch
perl-Socket-4:2.035-2.fc37.x86_64
perl-Storable-1:3.26-489.fc37.x86_64
perl-Symbol-1.09-491.fc37.noarch
perl-Term-ANSIColor-5.01-490.fc37.noarch
perl-Term-Cap-1.17-489.fc37.noarch
perl-Text-ParseWords-3.31-489.fc37.noarch
perl-Text-Tabs+Wrap-2021.0814-489.fc37.noarch
perl-Thread-Queue-3.14-489.fc37.noarch
perl-Time-Local-2:1.300-489.fc37.noarch
perl-constant-1.33-490.fc37.noarch
perl-generators-1.13-8.fc37.noarch
perl-if-0.61.000-491.fc37.noarch
perl-interpreter-4:5.36.0-491.fc37.x86_64
perl-lib-0.65-491.fc37.x86_64
perl-libs-4:5.36.0-491.fc37.x86_64
perl-macros-4:5.36.0-491.fc37.noarch
perl-mro-1.26-491.fc37.x86_64
perl-overload-1.35-491.fc37.noarch
perl-overloading-0.02-491.fc37.noarch
perl-parent-1:0.238-489.fc37.noarch
perl-podlators-1:4.14-489.fc37.noarch
perl-subs-1.04-491.fc37.noarch
perl-threads-1:2.27-489.fc37.x86_64
perl-threads-shared-1.64-489.fc37.x86_64
perl-vars-1.05-491.fc37.noarch
Complete!
Finish: build setup for bionetgen-2.8.4-1.fc37.src.rpm
Start: rpmbuild bionetgen-2.8.4-1.fc37.src.rpm
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1659916800
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.UmqlUd
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf bionetgen-2.8.4
+ /usr/bin/mkdir -p bionetgen-2.8.4
+ cd bionetgen-2.8.4
+ /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/bionetgen-BioNetGen-2.8.4.tar.gz
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ pushd bionetgen-BioNetGen-2.8.4
~/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4 ~/build/BUILD/bionetgen-2.8.4
+ rm -f bng2/libsource/gsl-1.9.tar.gz bng2/libsource/Mathutils.tar.gz bng2/libsource/muparser_v2_2_4.tar.gz bng2/libsource/muparser_v2_2_4.zip
+ tar -xvf bng2/libsource/cvode-2.6.0.tar.gz -C bng2/Network3
cvode-2.6.0/README
cvode-2.6.0/INSTALL_NOTES
cvode-2.6.0/LICENSE
cvode-2.6.0/Makefile.in
cvode-2.6.0/configure.ac
cvode-2.6.0/acinclude.m4
cvode-2.6.0/config.hin
cvode-2.6.0/configure
cvode-2.6.0/CMakeLists.txt
cvode-2.6.0/config/config.guess
cvode-2.6.0/config/config.sub
cvode-2.6.0/config/install-sh
cvode-2.6.0/config/mkinstalldirs
cvode-2.6.0/config/rminstalldirs
cvode-2.6.0/config/ltmain.sh
cvode-2.6.0/config/mod_c.m4
cvode-2.6.0/config/mod_fortran.m4
cvode-2.6.0/config/cust_general.m4
cvode-2.6.0/config/CheckFortranFunctionExists.cmake
cvode-2.6.0/config/SundialsFortran.cmake
cvode-2.6.0/config/SundialsLapack.cmake
cvode-2.6.0/config/SundialsMPIC.cmake
cvode-2.6.0/config/SundialsMPIF.cmake
cvode-2.6.0/config/FindLAPACK.cmake
cvode-2.6.0/config/FindBLAS.cmake
cvode-2.6.0/config/FindMPI.cmake
cvode-2.6.0/bin/sundials-config.in
cvode-2.6.0/bin/fortran-update.in
cvode-2.6.0/bin/makefile-update.in
cvode-2.6.0/include/sundials/sundials_config.in
cvode-2.6.0/include/sundials/sundials_types.h
cvode-2.6.0/include/sundials/sundials_math.h
cvode-2.6.0/include/sundials/sundials_nvector.h
cvode-2.6.0/include/sundials/sundials_fnvector.h
cvode-2.6.0/include/sundials/sundials_dense.h
cvode-2.6.0/include/sundials/sundials_direct.h
cvode-2.6.0/include/sundials/sundials_band.h
cvode-2.6.0/include/sundials/sundials_lapack.h
cvode-2.6.0/include/sundials/sundials_spgmr.h
cvode-2.6.0/include/sundials/sundials_spbcgs.h
cvode-2.6.0/include/sundials/sundials_sptfqmr.h
cvode-2.6.0/include/sundials/sundials_iterative.h
cvode-2.6.0/include/nvector/nvector_serial.h
cvode-2.6.0/include/nvector/nvector_parallel.h
cvode-2.6.0/src/sundials/README
cvode-2.6.0/src/sundials/Makefile.in
cvode-2.6.0/src/sundials/CMakeLists.txt
cvode-2.6.0/src/sundials/sundials_math.c
cvode-2.6.0/src/sundials/sundials_nvector.c
cvode-2.6.0/src/sundials/sundials_dense.c
cvode-2.6.0/src/sundials/sundials_direct.c
cvode-2.6.0/src/sundials/sundials_band.c
cvode-2.6.0/src/sundials/sundials_spgmr.c
cvode-2.6.0/src/sundials/sundials_spbcgs.c
cvode-2.6.0/src/sundials/sundials_sptfqmr.c
cvode-2.6.0/src/sundials/sundials_iterative.c
cvode-2.6.0/src/nvec_ser/README
cvode-2.6.0/src/nvec_ser/Makefile.in
cvode-2.6.0/src/nvec_ser/CMakeLists.txt
cvode-2.6.0/src/nvec_ser/fnvector_serial.h
cvode-2.6.0/src/nvec_ser/nvector_serial.c
cvode-2.6.0/src/nvec_ser/fnvector_serial.c
cvode-2.6.0/src/nvec_par/README
cvode-2.6.0/src/nvec_par/Makefile.in
cvode-2.6.0/src/nvec_par/CMakeLists.txt
cvode-2.6.0/src/nvec_par/fnvector_parallel.h
cvode-2.6.0/src/nvec_par/nvector_parallel.c
cvode-2.6.0/src/nvec_par/fnvector_parallel.c
cvode-2.6.0/examples/templates/cmakelists_parallel_C_ex.in
cvode-2.6.0/examples/templates/cmakelists_parallel_F77_ex.in
cvode-2.6.0/examples/templates/cmakelists_serial_C_ex.in
cvode-2.6.0/examples/templates/cmakelists_serial_F77_ex.in
cvode-2.6.0/examples/templates/makefile_parallel_C_ex.in
cvode-2.6.0/examples/templates/makefile_parallel_F77_ex.in
cvode-2.6.0/examples/templates/makefile_serial_C_ex.in
cvode-2.6.0/examples/templates/makefile_serial_F77_ex.in
cvode-2.6.0/doc/cvode/cv_guide.pdf
cvode-2.6.0/doc/cvode/cv_examples.pdf
cvode-2.6.0/include/cvode/cvode.h
cvode-2.6.0/include/cvode/cvode_direct.h
cvode-2.6.0/include/cvode/cvode_dense.h
cvode-2.6.0/include/cvode/cvode_band.h
cvode-2.6.0/include/cvode/cvode_lapack.h
cvode-2.6.0/include/cvode/cvode_diag.h
cvode-2.6.0/include/cvode/cvode_spgmr.h
cvode-2.6.0/include/cvode/cvode_spbcgs.h
cvode-2.6.0/include/cvode/cvode_sptfqmr.h
cvode-2.6.0/include/cvode/cvode_spils.h
cvode-2.6.0/include/cvode/cvode_bandpre.h
cvode-2.6.0/include/cvode/cvode_bbdpre.h
cvode-2.6.0/src/cvode/LICENSE
cvode-2.6.0/src/cvode/README
cvode-2.6.0/src/cvode/Makefile.in
cvode-2.6.0/src/cvode/CMakeLists.txt
cvode-2.6.0/src/cvode/cvode.c
cvode-2.6.0/src/cvode/cvode_io.c
cvode-2.6.0/src/cvode/cvode_direct.c
cvode-2.6.0/src/cvode/cvode_dense.c
cvode-2.6.0/src/cvode/cvode_band.c
cvode-2.6.0/src/cvode/cvode_lapack.c
cvode-2.6.0/src/cvode/cvode_diag.c
cvode-2.6.0/src/cvode/cvode_spils.c
cvode-2.6.0/src/cvode/cvode_spgmr.c
cvode-2.6.0/src/cvode/cvode_spbcgs.c
cvode-2.6.0/src/cvode/cvode_sptfqmr.c
cvode-2.6.0/src/cvode/cvode_bandpre.c
cvode-2.6.0/src/cvode/cvode_bbdpre.c
cvode-2.6.0/src/cvode/cvode_impl.h
cvode-2.6.0/src/cvode/cvode_direct_impl.h
cvode-2.6.0/src/cvode/cvode_diag_impl.h
cvode-2.6.0/src/cvode/cvode_spils_impl.h
cvode-2.6.0/src/cvode/cvode_bandpre_impl.h
cvode-2.6.0/src/cvode/cvode_bbdpre_impl.h
cvode-2.6.0/src/cvode/fcmix/Makefile.in
cvode-2.6.0/src/cvode/fcmix/CMakeLists.txt
cvode-2.6.0/src/cvode/fcmix/fcvode.c
cvode-2.6.0/src/cvode/fcmix/fcvewt.c
cvode-2.6.0/src/cvode/fcmix/fcvpreco.c
cvode-2.6.0/src/cvode/fcmix/fcvjtimes.c
cvode-2.6.0/src/cvode/fcmix/fcvband.c
cvode-2.6.0/src/cvode/fcmix/fcvdense.c
cvode-2.6.0/src/cvode/fcmix/fcvlapack.c
cvode-2.6.0/src/cvode/fcmix/fcvlapband.c
cvode-2.6.0/src/cvode/fcmix/fcvlapdense.c
cvode-2.6.0/src/cvode/fcmix/fcvbp.c
cvode-2.6.0/src/cvode/fcmix/fcvbbd.c
cvode-2.6.0/src/cvode/fcmix/fcvroot.c
cvode-2.6.0/src/cvode/fcmix/fcvode.h
cvode-2.6.0/src/cvode/fcmix/fcvbp.h
cvode-2.6.0/src/cvode/fcmix/fcvbbd.h
cvode-2.6.0/src/cvode/fcmix/fcvroot.h
cvode-2.6.0/examples/cvode/serial/README
cvode-2.6.0/examples/cvode/serial/Makefile.in
cvode-2.6.0/examples/cvode/serial/CMakeLists.txt
cvode-2.6.0/examples/cvode/serial/cvAdvDiff_bnd.c
cvode-2.6.0/examples/cvode/serial/cvAdvDiff_bndL.c
cvode-2.6.0/examples/cvode/serial/cvAdvDiff_bndL.out
cvode-2.6.0/examples/cvode/serial/cvAdvDiff_bnd.out
cvode-2.6.0/examples/cvode/serial/cvDirectDemo_ls.c
cvode-2.6.0/examples/cvode/serial/cvDirectDemo_ls.out
cvode-2.6.0/examples/cvode/serial/cvDiurnal_kry_bp.c
cvode-2.6.0/examples/cvode/serial/cvDiurnal_kry_bp.out
cvode-2.6.0/examples/cvode/serial/cvDiurnal_kry.c
cvode-2.6.0/examples/cvode/serial/cvDiurnal_kry.out
cvode-2.6.0/examples/cvode/serial/cvKrylovDemo_ls.c
cvode-2.6.0/examples/cvode/serial/cvKrylovDemo_ls.out
cvode-2.6.0/examples/cvode/serial/cvKrylovDemo_prec.c
cvode-2.6.0/examples/cvode/serial/cvKrylovDemo_prec.out
cvode-2.6.0/examples/cvode/serial/cvRoberts_dns.c
cvode-2.6.0/examples/cvode/serial/cvRoberts_dnsL.c
cvode-2.6.0/examples/cvode/serial/cvRoberts_dnsL.out
cvode-2.6.0/examples/cvode/serial/cvRoberts_dns.out
cvode-2.6.0/examples/cvode/serial/cvRoberts_dns_uw.c
cvode-2.6.0/examples/cvode/serial/cvRoberts_dns_uw.out
cvode-2.6.0/examples/cvode/fcmix_serial/README
cvode-2.6.0/examples/cvode/fcmix_serial/Makefile.in
cvode-2.6.0/examples/cvode/fcmix_serial/CMakeLists.txt
cvode-2.6.0/examples/cvode/fcmix_serial/fcvAdvDiff_bnd.f
cvode-2.6.0/examples/cvode/fcmix_serial/fcvAdvDiff_bnd.out
cvode-2.6.0/examples/cvode/fcmix_serial/fcvDiurnal_kry_bp.f
cvode-2.6.0/examples/cvode/fcmix_serial/fcvDiurnal_kry_bp.out
cvode-2.6.0/examples/cvode/fcmix_serial/fcvDiurnal_kry.f
cvode-2.6.0/examples/cvode/fcmix_serial/fcvDiurnal_kry.out
cvode-2.6.0/examples/cvode/fcmix_serial/fcvRoberts_dns.f
cvode-2.6.0/examples/cvode/fcmix_serial/fcvRoberts_dnsL.f
cvode-2.6.0/examples/cvode/fcmix_serial/fcvRoberts_dnsL.out
cvode-2.6.0/examples/cvode/fcmix_serial/fcvRoberts_dns.out
cvode-2.6.0/examples/cvode/parallel/README
cvode-2.6.0/examples/cvode/parallel/Makefile.in
cvode-2.6.0/examples/cvode/parallel/CMakeLists.txt
cvode-2.6.0/examples/cvode/parallel/cvAdvDiff_non_p.c
cvode-2.6.0/examples/cvode/parallel/cvAdvDiff_non_p.out
cvode-2.6.0/examples/cvode/parallel/cvDiurnal_kry_bbd_p.c
cvode-2.6.0/examples/cvode/parallel/cvDiurnal_kry_bbd_p.out
cvode-2.6.0/examples/cvode/parallel/cvDiurnal_kry_p.c
cvode-2.6.0/examples/cvode/parallel/cvDiurnal_kry_p.out
cvode-2.6.0/examples/cvode/fcmix_parallel/README
cvode-2.6.0/examples/cvode/fcmix_parallel/Makefile.in
cvode-2.6.0/examples/cvode/fcmix_parallel/CMakeLists.txt
cvode-2.6.0/examples/cvode/fcmix_parallel/fcvDiag_non_p.f
cvode-2.6.0/examples/cvode/fcmix_parallel/fcvDiag_non_p.out
cvode-2.6.0/examples/cvode/fcmix_parallel/fcvDiag_kry_bbd_p.f
cvode-2.6.0/examples/cvode/fcmix_parallel/fcvDiag_kry_bbd_p.out
cvode-2.6.0/examples/cvode/fcmix_parallel/fcvDiag_kry_p.f
cvode-2.6.0/examples/cvode/fcmix_parallel/fcvDiag_kry_p.out
~/build/BUILD/bionetgen-2.8.4
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.ZqebmI
+ popd
+ RPM_EC=0
++ jobs -p
+ exit 0
+ umask 022
+ cd /builddir/build/BUILD
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules'
+ export FCFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/bionetgen-2.8.4/.package_note-bionetgen-2.8.4-1.fc37.x86_64.ld'
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ '[' -f /usr/lib/rpm/generate-rpm-note.sh ']'
+ /usr/lib/rpm/generate-rpm-note.sh bionetgen 2.8.4-1.fc37 x86_64
+ cd bionetgen-2.8.4
~/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3 ~/build/BUILD/bionetgen-2.8.4
+ pushd bionetgen-BioNetGen-2.8.4/bng2/Network3
+ sed -i 's/AC_PROG_LIBTOOL/AM_PROG_AR\nLT_INIT/' configure.ac
+ sed -i 's/AC_PROG_LIBTOOL/AM_PROG_AR\nLT_INIT/' cvode-2.6.0/configure.ac
+ sed -i 's/muparser_.*//' configure.ac Makefile.am
+ sed -i -r 's!(run_network_LDADD =).*!\1 libmathutils.la ../cvode-2.6.0/src/nvec_ser/libsundials_nvecserial.la ../cvode-2.6.0/src/cvode/libsundials_cvode.la -lmuparser!' src/Makefile.am
+ autoreconf -iv --no-recursive
autoreconf: export WARNINGS=
autoreconf: Entering directory '.'
autoreconf: configure.ac: not using Gettext
autoreconf: running: aclocal -I m4
aclocal: warning: couldn't open directory 'm4': No such file or directory
autoreconf: configure.ac: tracing
autoreconf: running: libtoolize --copy
libtoolize: putting auxiliary files in '.'.
libtoolize: copying file './ltmain.sh'
libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'.
libtoolize: copying file 'm4/libtool.m4'
libtoolize: copying file 'm4/ltoptions.m4'
libtoolize: copying file 'm4/ltsugar.m4'
libtoolize: copying file 'm4/ltversion.m4'
libtoolize: copying file 'm4/lt~obsolete.m4'
autoreconf: configure.ac: not using Intltool
autoreconf: configure.ac: not using Gtkdoc
autoreconf: running: aclocal -I m4
autoreconf: running: /usr/bin/autoconf
autoreconf: running: /usr/bin/autoheader
autoreconf: running: automake --add-missing --copy --no-force
configure.ac:12: installing './ar-lib'
configure.ac:12: installing './compile'
configure.ac:16: installing './config.guess'
configure.ac:16: installing './config.sub'
configure.ac:6: installing './install-sh'
configure.ac:6: installing './missing'
src/Makefile.am: installing './depcomp'
autoreconf: Leaving directory '.'
+ warnings='-Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized'
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules'
+ export FCFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/bionetgen-2.8.4/.package_note-bionetgen-2.8.4-1.fc37.x86_64.ld'
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ '[' '-flto=auto -ffat-lto-objectsx' '!=' x ']'
++ find . -type f -name configure -print
+ for file in $(find . -type f -name configure -print)
+ /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\) = /__attribute__ ((used)) char (*f) () = /g' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\);/__attribute__ ((used)) char (*f) ();/g' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed -r --in-place=.backup 's/^char \$2 \(\);/__attribute__ ((used)) char \$2 ();/g' ./configure
+ diff -u ./configure.backup ./configure
--- ./configure.backup 2022-08-10 14:11:27.288077872 +0000
+++ ./configure 2022-08-10 14:11:28.319049619 +0000
@@ -1714,7 +1714,7 @@
#ifdef __cplusplus
extern "C"
#endif
-char $2 ();
+__attribute__ ((used)) char $2 ();
/* The GNU C library defines this for functions which it implements
to always fail with ENOSYS. Some functions are actually named
something starting with __ and the normal name is an alias. */
+ /usr/bin/sed --in-place=.backup '1{$!N;$!N};$!N;s/int x = 1;\nint y = 0;\nint z;\nint nan;/volatile int x = 1; volatile int y = 0; volatile int z, nan;/;P;D' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed --in-place=.backup 's#^lt_cv_sys_global_symbol_to_cdecl=.*#lt_cv_sys_global_symbol_to_cdecl="sed -n -e '\''s/^T .* \\(.*\\)$/extern int \\1();/p'\'' -e '\''s/^$symcode* .* \\(.*\\)$/extern char \\1;/p'\''"#' ./configure
+ diff -u ./configure.backup ./configure
--- ./configure.backup 2022-08-10 14:11:28.319049619 +0000
+++ ./configure 2022-08-10 14:11:28.344048934 +0000
@@ -7561,7 +7561,7 @@
# Transform an extracted symbol line into a proper C declaration.
# Some systems (esp. on ia64) link data and code symbols differently,
# so use this general approach.
-lt_cv_sys_global_symbol_to_cdecl="$SED -n"\
+lt_cv_sys_global_symbol_to_cdecl="sed -n -e 's/^T .* \(.*\)$/extern int \1();/p' -e 's/^$symcode* .* \(.*\)$/extern char \1;/p'"
$lt_cdecl_hook\
" -e 's/^T .* \(.*\)$/extern int \1();/p'"\
" -e 's/^$symcode$symcode* .* \(.*\)$/extern char \1;/p'"
@@ -19585,7 +19585,7 @@
compiler='`$ECHO "$compiler" | $SED "$delay_single_quote_subst"`'
GCC='`$ECHO "$GCC" | $SED "$delay_single_quote_subst"`'
lt_cv_sys_global_symbol_pipe='`$ECHO "$lt_cv_sys_global_symbol_pipe" | $SED "$delay_single_quote_subst"`'
-lt_cv_sys_global_symbol_to_cdecl='`$ECHO "$lt_cv_sys_global_symbol_to_cdecl" | $SED "$delay_single_quote_subst"`'
+lt_cv_sys_global_symbol_to_cdecl="sed -n -e 's/^T .* \(.*\)$/extern int \1();/p' -e 's/^$symcode* .* \(.*\)$/extern char \1;/p'"
lt_cv_sys_global_symbol_to_import='`$ECHO "$lt_cv_sys_global_symbol_to_import" | $SED "$delay_single_quote_subst"`'
lt_cv_sys_global_symbol_to_c_name_address='`$ECHO "$lt_cv_sys_global_symbol_to_c_name_address" | $SED "$delay_single_quote_subst"`'
lt_cv_sys_global_symbol_to_c_name_address_lib_prefix='`$ECHO "$lt_cv_sys_global_symbol_to_c_name_address_lib_prefix" | $SED "$delay_single_quote_subst"`'
+ for file in $(find . -type f -name configure -print)
+ /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\) = /__attribute__ ((used)) char (*f) () = /g' ./cvode-2.6.0/configure
+ diff -u ./cvode-2.6.0/configure.backup ./cvode-2.6.0/configure
+ mv ./cvode-2.6.0/configure.backup ./cvode-2.6.0/configure
+ /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\);/__attribute__ ((used)) char (*f) ();/g' ./cvode-2.6.0/configure
+ diff -u ./cvode-2.6.0/configure.backup ./cvode-2.6.0/configure
+ mv ./cvode-2.6.0/configure.backup ./cvode-2.6.0/configure
+ /usr/bin/sed -r --in-place=.backup 's/^char \$2 \(\);/__attribute__ ((used)) char \$2 ();/g' ./cvode-2.6.0/configure
+ diff -u ./cvode-2.6.0/configure.backup ./cvode-2.6.0/configure
+ mv ./cvode-2.6.0/configure.backup ./cvode-2.6.0/configure
+ /usr/bin/sed --in-place=.backup '1{$!N;$!N};$!N;s/int x = 1;\nint y = 0;\nint z;\nint nan;/volatile int x = 1; volatile int y = 0; volatile int z, nan;/;P;D' ./cvode-2.6.0/configure
+ diff -u ./cvode-2.6.0/configure.backup ./cvode-2.6.0/configure
+ mv ./cvode-2.6.0/configure.backup ./cvode-2.6.0/configure
+ /usr/bin/sed --in-place=.backup 's#^lt_cv_sys_global_symbol_to_cdecl=.*#lt_cv_sys_global_symbol_to_cdecl="sed -n -e '\''s/^T .* \\(.*\\)$/extern int \\1();/p'\'' -e '\''s/^$symcode* .* \\(.*\\)$/extern char \\1;/p'\''"#' ./cvode-2.6.0/configure
+ diff -u ./cvode-2.6.0/configure.backup ./cvode-2.6.0/configure
--- ./cvode-2.6.0/configure.backup 2009-05-10 00:03:02.000000000 +0000
+++ ./cvode-2.6.0/configure 2022-08-10 14:11:28.415046989 +0000
@@ -13751,7 +13751,7 @@
sympat='\([_A-Za-z][_A-Za-z0-9]*\)'
# Transform an extracted symbol line into a proper C declaration
-lt_cv_sys_global_symbol_to_cdecl="sed -n -e 's/^. .* \(.*\)$/extern int \1;/p'"
+lt_cv_sys_global_symbol_to_cdecl="sed -n -e 's/^T .* \(.*\)$/extern int \1();/p' -e 's/^$symcode* .* \(.*\)$/extern char \1;/p'"
# Transform an extracted symbol line into symbol name and symbol address
lt_cv_sys_global_symbol_to_c_name_address="sed -n -e 's/^: \([^ ]*\) $/ {\\\"\1\\\", (lt_ptr) 0},/p' -e 's/^$symcode \([^ ]*\) \([^ ]*\)$/ {\"\2\", (lt_ptr) \&\2},/p'"
+ '[' 1 = 1 ']'
+++ dirname ./configure
++ find . -name config.guess -o -name config.sub
+ for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub)
++ basename ./config.sub
+ '[' -f /usr/lib/rpm/redhat/config.sub ']'
+ /usr/bin/rm -f ./config.sub
++ basename ./config.sub
+ /usr/bin/cp -fv /usr/lib/rpm/redhat/config.sub ./config.sub
'/usr/lib/rpm/redhat/config.sub' -> './config.sub'
+ for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub)
++ basename ./config.guess
+ '[' -f /usr/lib/rpm/redhat/config.guess ']'
+ /usr/bin/rm -f ./config.guess
++ basename ./config.guess
+ /usr/bin/cp -fv /usr/lib/rpm/redhat/config.guess ./config.guess
'/usr/lib/rpm/redhat/config.guess' -> './config.guess'
+ for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub)
++ basename ./cvode-2.6.0/config/config.sub
+ '[' -f /usr/lib/rpm/redhat/config.sub ']'
+ /usr/bin/rm -f ./cvode-2.6.0/config/config.sub
++ basename ./cvode-2.6.0/config/config.sub
+ /usr/bin/cp -fv /usr/lib/rpm/redhat/config.sub ./cvode-2.6.0/config/config.sub
'/usr/lib/rpm/redhat/config.sub' -> './cvode-2.6.0/config/config.sub'
+ for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub)
++ basename ./cvode-2.6.0/config/config.guess
+ '[' -f /usr/lib/rpm/redhat/config.guess ']'
+ /usr/bin/rm -f ./cvode-2.6.0/config/config.guess
++ basename ./cvode-2.6.0/config/config.guess
+ /usr/bin/cp -fv /usr/lib/rpm/redhat/config.guess ./cvode-2.6.0/config/config.guess
'/usr/lib/rpm/redhat/config.guess' -> './cvode-2.6.0/config/config.guess'
+ '[' 1 = 1 ']'
+ '[' x '!=' 'x-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' ']'
++ find . -name ltmain.sh
+ for i in $(find . -name ltmain.sh)
+ /usr/bin/sed -i.backup -e 's~compiler_flags=$~compiler_flags="-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld"~' ./ltmain.sh
+ for i in $(find . -name ltmain.sh)
+ /usr/bin/sed -i.backup -e 's~compiler_flags=$~compiler_flags="-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld"~' ./cvode-2.6.0/config/ltmain.sh
+ ./configure --build=x86_64-redhat-linux-gnu --host=x86_64-redhat-linux-gnu --program-prefix= --disable-dependency-tracking --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib64 --libexecdir=/usr/libexec --localstatedir=/var --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info CC=gcc CXX=g++ F77=gfortran
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a race-free mkdir -p... /usr/bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking whether make supports the include directive... yes (GNU style)
checking for x86_64-redhat-linux-gnu-gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether gcc accepts -g... yes
checking for gcc option to enable C11 features... none needed
checking whether gcc understands -c and -o together... yes
checking dependency style of gcc... none
checking for x86_64-redhat-linux-gnu-ar... no
checking for x86_64-redhat-linux-gnu-lib... no
checking for x86_64-redhat-linux-gnu-link... no
checking for ar... ar
checking the archiver (ar) interface... ar
checking for x86_64-redhat-linux-gnu-ar... ar
checking the archiver (ar) interface... (cached) ar
checking build system type... x86_64-redhat-linux-gnu
checking host system type... x86_64-redhat-linux-gnu
checking how to print strings... printf
checking for a sed that does not truncate output... /usr/bin/sed
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for fgrep... /usr/bin/grep -F
checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 1572864
checking how to convert x86_64-redhat-linux-gnu file names to x86_64-redhat-linux-gnu format... func_convert_file_noop
checking how to convert x86_64-redhat-linux-gnu file names to toolchain format... func_convert_file_noop
checking for /usr/bin/ld option to reload object files... -r
checking for x86_64-redhat-linux-gnu-file... no
checking for file... file
checking for x86_64-redhat-linux-gnu-objdump... no
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for x86_64-redhat-linux-gnu-dlltool... no
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for x86_64-redhat-linux-gnu-ar... (cached) ar
checking for archiver @FILE support... @
checking for x86_64-redhat-linux-gnu-strip... no
checking for strip... strip
checking for x86_64-redhat-linux-gnu-ranlib... no
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from gcc object... ./configure: line 7567: -e 's/^T .* \(.*\)$/extern int \1();/p' -e 's/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(.*\)$/extern char \1;/p': No such file or directory
ok
checking for sysroot... no
checking for a working dd... /usr/bin/dd
checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1
checking for x86_64-redhat-linux-gnu-mt... no
checking for mt... no
checking if : is a manifest tool... no
checking for stdio.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for strings.h... yes
checking for sys/stat.h... yes
checking for sys/types.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC -DPIC
checking if gcc PIC flag -fPIC -DPIC works... yes
checking if gcc static flag -static works... no
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking whether the compiler supports GNU C++... yes
checking whether g++ accepts -g... yes
checking for g++ option to enable C++11 features... none needed
checking dependency style of g++... none
checking how to run the C++ preprocessor... g++ -E
checking for ld used by g++... /usr/bin/ld -m elf_x86_64
checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes
checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking for g++ option to produce PIC... -fPIC -DPIC
checking if g++ PIC flag -fPIC -DPIC works... yes
checking if g++ static flag -static works... no
checking if g++ supports -c -o file.o... yes
checking if g++ supports -c -o file.o... (cached) yes
checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking for gawk... (cached) gawk
checking for x86_64-redhat-linux-gnu-gcc... (cached) gcc
checking whether the compiler supports GNU C... (cached) yes
checking whether gcc accepts -g... (cached) yes
checking for gcc option to enable C11 features... (cached) none needed
checking whether gcc understands -c and -o together... (cached) yes
checking dependency style of gcc... (cached) none
checking how to run the C preprocessor... gcc -E
checking whether ln -s works... yes
checking whether make sets $(MAKE)... (cached) yes
checking for limits.h... yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking for unistd.h... (cached) yes
checking for _Bool... yes
checking for stdbool.h that conforms to C99... yes
checking for inline... inline
checking for size_t... yes
checking for GNU libc compatible malloc... yes
checking for GNU libc compatible realloc... yes
checking for floor... no
checking for pow... no
checking for rint... no
checking for sqrt... no
checking for strchr... yes
checking for strdup... yes
checking for strpbrk... yes
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating config.h
config.status: executing depfiles commands
config.status: executing libtool commands
=== configuring in cvode-2.6.0 (/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0)
configure: running /bin/sh ./configure --disable-option-checking '--prefix=/usr' '--build=x86_64-redhat-linux-gnu' '--host=x86_64-redhat-linux-gnu' '--program-prefix=' '--disable-dependency-tracking' '--exec-prefix=/usr' '--bindir=/usr/bin' '--sbindir=/usr/sbin' '--sysconfdir=/etc' '--datadir=/usr/share' '--includedir=/usr/include' '--libdir=/usr/lib64' '--libexecdir=/usr/libexec' '--localstatedir=/var' '--sharedstatedir=/var/lib' '--mandir=/usr/share/man' '--infodir=/usr/share/info' 'CC=gcc' 'CXX=g++' 'F77=gfortran' 'build_alias=x86_64-redhat-linux-gnu' 'host_alias=x86_64-redhat-linux-gnu' 'CFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' 'LDFLAGS=-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/bionetgen-2.8.4/.package_note-bionetgen-2.8.4-1.fc37.x86_64.ld' 'LT_SYS_LIBRARY_PATH=/usr/lib64:' 'CXXFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' --cache-file=/dev/null --srcdir=.
---------------------------------
Running SUNDIALS Configure Script
---------------------------------
Initialization
--------------
checking build system type... x86_64-redhat-linux-gnu
checking host system type... x86_64-redhat-linux-gnu
checking whether make sets $(MAKE)... yes
checking for a BSD-compatible install... /usr/bin/install -c
C Compiler Settings
-------------------
checking for x86_64-redhat-linux-gnu-cc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking floating-point data type to use... double
checking for C compiler flags... none
checking how to run the C preprocessor... gcc -E
checking for C/C++ preprocessor flags... none
checking for linker flags... none
checking for extra libraries... none
checking for ANSI C header files... yes
checking for stdlib.h... (cached) yes
checking float.h usability... yes
checking float.h presence... yes
checking for float.h... yes
checking math.h usability... yes
checking math.h presence... yes
checking for math.h... yes
checking for abs in -lm... yes
checking for fabs in -lm... yes
checking for pow in -lm... yes
checking for sqrt in -lm... yes
checking for additional required C libraries... -lm
checking for int... yes
checking size of int... 4
checking for long int... yes
checking size of long int... 8
checking for double... yes
checking size of double... 8
checking for egrep... (cached) /usr/bin/grep -E
checking for fgrep... /usr/bin/grep -F
checking if gcc is a C++ compiler... no
Fortran Settings
----------------
checking for x86_64-redhat-linux-gnu-f77... gfortran
checking whether we are using the GNU Fortran 77 compiler... yes
checking whether gfortran accepts -g... yes
checking for extra Fortran compiler flags... none
checking how to get verbose linking output from gfortran... -v
checking for Fortran 77 libraries of gfortran... -L/usr/lib/gcc/x86_64-redhat-linux/12 -L/usr/lib/gcc/x86_64-redhat-linux/12/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/12/../../.. -lgfortran -lm -lquadmath
checking which linker to use... gfortran
checking for Fortran name-mangling scheme of C identifiers... lower case + one underscore
checking for Fortran name-mangling scheme of C identifiers with underscores... lower case + one underscore
checking for dgemm_... no
checking for dgemm_ in -lcxml... no
checking for dgemm_ in -ldxml... no
checking for dgemm_ in -lscs... no
checking for dgemm_ in -lcomplib.sgimath... no
checking for dgemm_ in -lblas... no
checking for dgemm_ in -lblas... (cached) no
checking for Blas/Lapack library linkage... "no"
Unable to determine Blas/Lapack library linkage.
Try using --with-blas and --with-lapack.
Disabling compilation of Blas/Lapack interfaces...
MPI-C Settings
--------------
checking if using MPI-C script... yes
checking if absolute path to mpicc was given... no
checking for mpicc... none
Unable to find a functional MPI-C compiler.
Try using --with-mpicc to specify a MPI-C compiler script,
--with-mpi-incdir, --with-mpi-libdir and --with-mpi-libs
to specify the locations of all relevant MPI files, or
--with-mpi-root to specify the base installation directory
of the MPI implementation to be used.
Disabling the parallel NVECTOR module and all parallel examples...
configure: WARNING: cannot find MPI-C compiler
Libtool Settings
----------------
checking for a sed that does not truncate output... /usr/bin/sed
checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for /usr/bin/ld option to reload object files... -r
checking for BSD-compatible nm... /usr/bin/nm -B
checking whether ln -s works... yes
checking how to recognize dependent libraries... pass_all
checking dlfcn.h usability... yes
checking dlfcn.h presence... yes
checking for dlfcn.h... yes
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking how to run the C++ preprocessor... g++ -E
checking the maximum length of command line arguments... 1572864
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking for objdir... .libs
checking for x86_64-redhat-linux-gnu-ar... no
checking for ar... ar
checking for x86_64-redhat-linux-gnu-ranlib... no
checking for ranlib... ranlib
checking for x86_64-redhat-linux-gnu-strip... no
checking for strip... strip
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC
checking if gcc PIC flag -fPIC works... yes
checking if gcc static flag -static works... no
checking if gcc supports -c -o file.o... yes
checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... no
checking whether to build static libraries... yes
configure: creating libtool
appending configuration tag "CXX" to libtool
checking for ld used by g++... /usr/bin/ld -m elf_x86_64
checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes
checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking for g++ option to produce PIC... -fPIC
checking if g++ PIC flag -fPIC works... yes
checking if g++ static flag -static works... no
checking if g++ supports -c -o file.o... yes
checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
appending configuration tag "F77" to libtool
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... no
checking whether to build static libraries... yes
checking for gfortran option to produce PIC... -fPIC
checking if gfortran PIC flag -fPIC works... yes
checking if gfortran static flag -static works... no
checking if gfortran supports -c -o file.o... yes
checking whether the gfortran linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
Create Makefiles and configuration files
----------------------------------------
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/sundials/Makefile
config.status: creating src/nvec_ser/Makefile
config.status: creating src/cvode/Makefile
config.status: creating src/cvode/fcmix/Makefile
config.status: creating include/sundials/sundials_config.h
config.status: creating bin/sundials-config
config.status: creating config.h
***************
* WARNING *
***************
At least one warning was issued. Some features were disabled.
Review the configure output and/or the contents of config.log
before proceeding with the build.
------------------------------
SUNDIALS Configuration Summary
------------------------------
Configuration
-------------
Host System: x86_64-redhat-linux-gnu
Build System: x86_64-redhat-linux-gnu
C Preprocessor: gcc -E
C Preprocessor Flags:
C Compiler: gcc
C Compiler Flags -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection
C Linker: gcc
Linker Flags: -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/bionetgen-2.8.4/.package_note-bionetgen-2.8.4-1.fc37.x86_64.ld
Libraries: -lm
Fortran Compiler: gfortran
Fortran Compiler Flags: -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules
Fortran Linker: gfortran
Extra Fortran Libraries: -L/usr/lib/gcc/x86_64-redhat-linux/12 -L/usr/lib/gcc/x86_64-redhat-linux/12/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/12/../../.. -lgfortran -lm -lquadmath
srcdir: /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0
builddir: /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0
prefix: /usr
exec_prefix: /usr
includedir: /usr/include
libdir: /usr/lib64
Modules
-------
CVODE FCVODE
Type 'make' and then 'make install' to build and install SUNDIALS 2.4.0.
----------------------------------
Finished SUNDIALS Configure Script
----------------------------------
++ echo '-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
++ sed -e s/-Werror=format-security/-Wno-error=format-security/g
+ SETOPT_FLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ /usr/bin/make -O -j2 V=1 VERBOSE=1 -C cvode-2.6.0 V=1 CC=gcc CXX=g++ F77=gfortran 'CXXFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized' 'CFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized'
----------------------
Make src/sundials...
----------------------
make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/sundials'
make[2]: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/sundials'
make[2]: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/sundials'
make[2]: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/sundials'
/bin/sh ../../libtool --mode=compile gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./sundials_direct.c
gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./sundials_direct.c -o sundials_direct.o
/bin/sh ../../libtool --mode=compile gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./sundials_band.c
gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./sundials_band.c -o sundials_band.o
/bin/sh ../../libtool --mode=compile gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./sundials_dense.c
gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./sundials_dense.c -o sundials_dense.o
/bin/sh ../../libtool --mode=compile gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./sundials_iterative.c
gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./sundials_iterative.c -o sundials_iterative.o
/bin/sh ../../libtool --mode=compile gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./sundials_math.c
gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./sundials_math.c -o sundials_math.o
/bin/sh ../../libtool --mode=compile gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./sundials_nvector.c
gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./sundials_nvector.c -o sundials_nvector.o
/bin/sh ../../libtool --mode=compile gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./sundials_spgmr.c
gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./sundials_spgmr.c -o sundials_spgmr.o
/bin/sh ../../libtool --mode=compile gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./sundials_spbcgs.c
gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./sundials_spbcgs.c -o sundials_spbcgs.o
/bin/sh ../../libtool --mode=compile gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./sundials_sptfqmr.c
gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./sundials_sptfqmr.c -o sundials_sptfqmr.o
make[2]: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/sundials'
make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/sundials'
----------------------
Make src/nvec_ser...
----------------------
make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
make[2]: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/sundials'
make[3]: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/sundials'
make[3]: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/sundials'
make[3]: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/sundials'
make[3]: Nothing to be done for 'lib_without_bl'.
make[3]: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/sundials'
make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
make[2]: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/sundials'
make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/nvec_ser'
/bin/sh ../../libtool --mode=compile gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fnvector_serial.c
gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fnvector_serial.c -o fnvector_serial.o
make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/nvec_ser'
make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/nvec_ser'
/bin/sh ../../libtool --mode=link gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -o libsundials_fnvecserial.la fnvector_serial.lo ../../src/sundials/sundials_math.lo -rpath /usr/lib64 -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/bionetgen-2.8.4/.package_note-bionetgen-2.8.4-1.fc37.x86_64.ld -lm -version-info 0:2:0
mkdir .libs
ar cru .libs/libsundials_fnvecserial.a fnvector_serial.o ../../src/sundials/sundials_math.o
ranlib .libs/libsundials_fnvecserial.a
creating libsundials_fnvecserial.la
(cd .libs && rm -f libsundials_fnvecserial.la && ln -s ../libsundials_fnvecserial.la libsundials_fnvecserial.la)
make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/nvec_ser'
make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/nvec_ser'
/bin/sh ../../libtool --mode=compile gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./nvector_serial.c
gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./nvector_serial.c -o nvector_serial.o
make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/nvec_ser'
make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/nvec_ser'
/bin/sh ../../libtool --mode=link gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -o libsundials_nvecserial.la nvector_serial.lo ../../src/sundials/sundials_math.lo -rpath /usr/lib64 -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/bionetgen-2.8.4/.package_note-bionetgen-2.8.4-1.fc37.x86_64.ld -lm -version-info 0:2:0
ar cru .libs/libsundials_nvecserial.a nvector_serial.o ../../src/sundials/sundials_math.o
ranlib .libs/libsundials_nvecserial.a
creating libsundials_nvecserial.la
(cd .libs && rm -f libsundials_nvecserial.la && ln -s ../libsundials_nvecserial.la libsundials_nvecserial.la)
make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/nvec_ser'
----------------------
Make src/cvode...
----------------------
make[2]: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/sundials'
make[3]: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/sundials'
make[3]: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/sundials'
make[3]: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/sundials'
make[3]: Nothing to be done for 'lib_without_bl'.
make[3]: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/sundials'
make[2]: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/sundials'
make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode'
/bin/sh ../../libtool --mode=compile gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_io.c
gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_io.c -o cvode_io.o
make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode'
make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode'
/bin/sh ../../libtool --mode=compile gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_direct.c
gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_direct.c -o cvode_direct.o
make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode'
make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode'
/bin/sh ../../libtool --mode=compile gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_band.c
gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_band.c -o cvode_band.o
make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode'
make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode'
/bin/sh ../../libtool --mode=compile gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_dense.c
gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_dense.c -o cvode_dense.o
make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode'
make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode'
/bin/sh ../../libtool --mode=compile gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_diag.c
gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_diag.c -o cvode_diag.o
make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode'
make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode'
/bin/sh ../../libtool --mode=compile gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode.c
gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode.c -o cvode.o
make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode'
make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode'
/bin/sh ../../libtool --mode=compile gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_spils.c
gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_spils.c -o cvode_spils.o
make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode'
make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode'
/bin/sh ../../libtool --mode=compile gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_spbcgs.c
gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_spbcgs.c -o cvode_spbcgs.o
make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode'
make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode'
/bin/sh ../../libtool --mode=compile gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_spgmr.c
gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_spgmr.c -o cvode_spgmr.o
make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode'
make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode'
/bin/sh ../../libtool --mode=compile gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_sptfqmr.c
gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_sptfqmr.c -o cvode_sptfqmr.o
make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode'
make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode'
/bin/sh ../../libtool --mode=compile gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_bandpre.c
gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_bandpre.c -o cvode_bandpre.o
make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode'
make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode'
/bin/sh ../../libtool --mode=compile gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_bbdpre.c
gcc -I./../../include -I../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./cvode_bbdpre.c -o cvode_bbdpre.o
make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode'
make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode'
make[2]: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode'
make[2]: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode'
make[2]: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode'
make[3]: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/sundials'
make[4]: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/sundials'
make[4]: Nothing to be done for 'lib_without_bl'.
make[4]: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/sundials'
make[3]: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/sundials'
/bin/sh ../../libtool --mode=link gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -o libsundials_cvode.la cvode.lo cvode_io.lo cvode_direct.lo cvode_band.lo cvode_dense.lo cvode_diag.lo cvode_spils.lo cvode_spbcgs.lo cvode_spgmr.lo cvode_sptfqmr.lo cvode_bandpre.lo cvode_bbdpre.lo ../../src/sundials/sundials_band.lo ../../src/sundials/sundials_dense.lo ../../src/sundials/sundials_direct.lo ../../src/sundials/sundials_iterative.lo ../../src/sundials/sundials_spgmr.lo ../../src/sundials/sundials_spbcgs.lo ../../src/sundials/sundials_sptfqmr.lo ../../src/sundials/sundials_math.lo ../../src/sundials/sundials_nvector.lo -rpath /usr/lib64 -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/bionetgen-2.8.4/.package_note-bionetgen-2.8.4-1.fc37.x86_64.ld -lm -version-info 1:0:0
mkdir .libs
ar cru .libs/libsundials_cvode.a cvode.o cvode_io.o cvode_direct.o cvode_band.o cvode_dense.o cvode_diag.o cvode_spils.o cvode_spbcgs.o cvode_spgmr.o cvode_sptfqmr.o cvode_bandpre.o cvode_bbdpre.o ../../src/sundials/sundials_band.o ../../src/sundials/sundials_dense.o ../../src/sundials/sundials_direct.o ../../src/sundials/sundials_iterative.o ../../src/sundials/sundials_spgmr.o ../../src/sundials/sundials_spbcgs.o ../../src/sundials/sundials_sptfqmr.o ../../src/sundials/sundials_math.o ../../src/sundials/sundials_nvector.o
ranlib .libs/libsundials_cvode.a
creating libsundials_cvode.la
(cd .libs && rm -f libsundials_cvode.la && ln -s ../libsundials_cvode.la libsundials_cvode.la)
make[2]: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode'
make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode'
----------------------
Make src/cvode/fcmix...
----------------------
make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix'
/bin/sh ../../../libtool --mode=compile gcc -I./../../../include -I./../../../src/cvode -I../../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fcvband.c
gcc -I./../../../include -I./../../../src/cvode -I../../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fcvband.c -o fcvband.o
make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix'
make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix'
/bin/sh ../../../libtool --mode=compile gcc -I./../../../include -I./../../../src/cvode -I../../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fcvode.c
gcc -I./../../../include -I./../../../src/cvode -I../../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fcvode.c -o fcvode.o
make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix'
make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix'
/bin/sh ../../../libtool --mode=compile gcc -I./../../../include -I./../../../src/cvode -I../../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fcvdense.c
gcc -I./../../../include -I./../../../src/cvode -I../../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fcvdense.c -o fcvdense.o
make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix'
make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix'
/bin/sh ../../../libtool --mode=compile gcc -I./../../../include -I./../../../src/cvode -I../../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fcvjtimes.c
gcc -I./../../../include -I./../../../src/cvode -I../../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fcvjtimes.c -o fcvjtimes.o
make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix'
make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix'
/bin/sh ../../../libtool --mode=compile gcc -I./../../../include -I./../../../src/cvode -I../../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fcvpreco.c
gcc -I./../../../include -I./../../../src/cvode -I../../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fcvpreco.c -o fcvpreco.o
make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix'
make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix'
/bin/sh ../../../libtool --mode=compile gcc -I./../../../include -I./../../../src/cvode -I../../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fcvbbd.c
gcc -I./../../../include -I./../../../src/cvode -I../../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fcvbbd.c -o fcvbbd.o
make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix'
make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix'
/bin/sh ../../../libtool --mode=compile gcc -I./../../../include -I./../../../src/cvode -I../../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fcvbp.c
gcc -I./../../../include -I./../../../src/cvode -I../../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fcvbp.c -o fcvbp.o
make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix'
make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix'
/bin/sh ../../../libtool --mode=compile gcc -I./../../../include -I./../../../src/cvode -I../../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fcvroot.c
gcc -I./../../../include -I./../../../src/cvode -I../../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fcvroot.c -o fcvroot.o
make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix'
make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix'
/bin/sh ../../../libtool --mode=compile gcc -I./../../../include -I./../../../src/cvode -I../../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fcvewt.c
gcc -I./../../../include -I./../../../src/cvode -I../../../include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c ./fcvewt.c -o fcvewt.o
make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix'
make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix'
make[2]: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix'
make[2]: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix'
make[2]: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix'
/bin/sh ../../../libtool --mode=link gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-error=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -o libsundials_fcvode.la fcvode.lo fcvband.lo fcvdense.lo fcvjtimes.lo fcvpreco.lo fcvbbd.lo fcvbp.lo fcvroot.lo fcvewt.lo -rpath /usr/lib64 -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/bionetgen-2.8.4/.package_note-bionetgen-2.8.4-1.fc37.x86_64.ld -lm -static -version-info 0:1:0
mkdir .libs
ar cru .libs/libsundials_fcvode.a fcvode.o fcvband.o fcvdense.o fcvjtimes.o fcvpreco.o fcvbbd.o fcvbp.o fcvroot.o fcvewt.o
ranlib .libs/libsundials_fcvode.a
creating libsundials_fcvode.la
(cd .libs && rm -f libsundials_fcvode.la && ln -s ../libsundials_fcvode.la libsundials_fcvode.la)
make[2]: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix'
make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/cvode-2.6.0/src/cvode/fcmix'
make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
+ /usr/bin/make -O -j2 V=1 VERBOSE=1 -C src V=1 CC=gcc CXX=g++ F77=gfortran 'CXXFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o run_network-network3.o `test -f 'network3.cpp' || echo './'`network3.cpp
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o run_network-network.o `test -f 'network.cpp' || echo './'`network.cpp
network.cpp: In function 'Rxn* new_Rxn(int, int, int, int*, int*, int, int, int*, double, Elt_array*)':
network.cpp:1132:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
1132 | register int i;
| ^
network.cpp: In function 'int* read_indices_Rxn(char*, int*, Elt_array*, int)':
network.cpp:1543:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
1543 | register int i;
| ^
network.cpp: In function 'void print_Rxn_array(FILE*, Rxn_array*, Elt_array*, Elt_array*)':
network.cpp:1925:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
1925 | register int i;
| ^
network.cpp: In function 'int n_species_active()':
network.cpp:2068:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
2068 | register int i;
| ^
network.cpp: In function 'int get_conc_network(double*)':
network.cpp:2088:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
2088 | register int i;
| ^
network.cpp: In function 'int set_conc_network(double*)':
network.cpp:2110:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
2110 | register int i, n_species;
| ^
network.cpp:2110:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
2110 | register int i, n_species;
| ^~~~~~~~~
network.cpp: In function 'int rxn_rates_network(double*, int)':
network.cpp:2729:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
2729 | register int i;
| ^
network.cpp: In function 'int print_derivs_network(FILE*)':
network.cpp:2957:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
2957 | register int i/*,j*/;
| ^
network.cpp: In function 'int print_derivs_species_network(FILE*)':
network.cpp:2990:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
2990 | register int i/*,j*/;
| ^
network.cpp: In function 'int print_rates_network(FILE*, int)':
network.cpp:3019:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
3019 | register int i;
| ^
network.cpp: In function 'void sparse_jac_matlab(FILE*)':
network.cpp:3198:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
3198 | register int i, j, r, n;
| ^
network.cpp:3198:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
3198 | register int i, j, r, n;
| ^
network.cpp:3198:28: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
3198 | register int i, j, r, n;
| ^
network.cpp:3198:31: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
3198 | register int i, j, r, n;
| ^
network.cpp: In function 'void CVjac_network(long int, DlsMat, realtype, N_Vector, N_Vector, void*, N_Vector, N_Vector, N_Vector)':
network.cpp:3272:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
3272 | register int i, j, r, n;
| ^
network.cpp:3272:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
3272 | register int i, j, r, n;
| ^
network.cpp:3272:28: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
3272 | register int i, j, r, n;
| ^
network.cpp:3272:31: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
3272 | register int i, j, r, n;
| ^
network.cpp: In function 'int CVjtimes(N_Vector, N_Vector, realtype, N_Vector, N_Vector, void*, N_Vector)':
network.cpp:3333:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
3333 | register int i, j, r, n;
| ^
network.cpp:3333:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
3333 | register int i, j, r, n;
| ^
network.cpp:3333:28: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
3333 | register int i, j, r, n;
| ^
network.cpp:3333:31: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
3333 | register int i, j, r, n;
| ^
network.cpp: In function 'int print_flux_network(FILE*, double, int)':
network.cpp:4037:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
4037 | register int i;
| ^
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o util/run_network-misc.o `test -f 'util/misc.cpp' || echo './'`util/misc.cpp
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/run_network-function.o `test -f 'model/function.cpp' || echo './'`model/function.cpp
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o run_network-run_network.o `test -f 'run_network.cpp' || echo './'`run_network.cpp
run_network.cpp: In function 'int main(int, char**)':
run_network.cpp:95:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
95 | register int i/*, j*/;
| ^
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/run_network-observable.o `test -f 'model/observable.cpp' || echo './'`model/observable.cpp
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/run_network-rateExpression.o `test -f 'model/rateExpression.cpp' || echo './'`model/rateExpression.cpp
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/run_network-simpleSpecies.o `test -f 'model/simpleSpecies.cpp' || echo './'`model/simpleSpecies.cpp
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/run_network-reaction.o `test -f 'model/reaction.cpp' || echo './'`model/reaction.cpp
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/rateExpressions/run_network-rateElementary.o `test -f 'model/rateExpressions/rateElementary.cpp' || echo './'`model/rateExpressions/rateElementary.cpp
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/rateExpressions/run_network-rateHill.o `test -f 'model/rateExpressions/rateHill.cpp' || echo './'`model/rateExpressions/rateHill.cpp
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/rateExpressions/run_network-rateMM.o `test -f 'model/rateExpressions/rateMM.cpp' || echo './'`model/rateExpressions/rateMM.cpp
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/rateExpressions/run_network-rateMuParser.o `test -f 'model/rateExpressions/rateMuParser.cpp' || echo './'`model/rateExpressions/rateMuParser.cpp
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/rateExpressions/run_network-rateSaturation.o `test -f 'model/rateExpressions/rateSaturation.cpp' || echo './'`model/rateExpressions/rateSaturation.cpp
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/reactions/run_network-elementaryRxn.o `test -f 'model/reactions/elementaryRxn.cpp' || echo './'`model/reactions/elementaryRxn.cpp
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/reactions/run_network-bioNetGenRxn.o `test -f 'model/reactions/bioNetGenRxn.cpp' || echo './'`model/reactions/bioNetGenRxn.cpp
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/reactions/run_network-functionalRxn.o `test -f 'model/reactions/functionalRxn.cpp' || echo './'`model/reactions/functionalRxn.cpp
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/reactions/run_network-hillRxn.o `test -f 'model/reactions/hillRxn.cpp' || echo './'`model/reactions/hillRxn.cpp
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/reactions/run_network-michaelisMentenRxn.o `test -f 'model/reactions/michaelisMentenRxn.cpp' || echo './'`model/reactions/michaelisMentenRxn.cpp
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o model/reactions/run_network-saturationRxn.o `test -f 'model/reactions/saturationRxn.cpp' || echo './'`model/reactions/saturationRxn.cpp
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/base/run_network-firingGenerator.o `test -f 'pla/base/firingGenerator.cpp' || echo './'`pla/base/firingGenerator.cpp
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/run_network-PLA.o `test -f 'pla/PLA.cpp' || echo './'`pla/PLA.cpp
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/base/run_network-postleapChecker.o `test -f 'pla/base/postleapChecker.cpp' || echo './'`pla/base/postleapChecker.cpp
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/base/run_network-rxnClassifier.o `test -f 'pla/base/rxnClassifier.cpp' || echo './'`pla/base/rxnClassifier.cpp
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/base/run_network-tauCalculator.o `test -f 'pla/base/tauCalculator.cpp' || echo './'`pla/base/tauCalculator.cpp
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/eRungeKutta/run_network-eRungeKutta_postTC_RC_FG_rbPL.o `test -f 'pla/eRungeKutta/eRungeKutta_postTC_RC_FG_rbPL.cpp' || echo './'`pla/eRungeKutta/eRungeKutta_postTC_RC_FG_rbPL.cpp
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/eRungeKutta/run_network-eRungeKutta_postTC_RC_FG_sbPL.o `test -f 'pla/eRungeKutta/eRungeKutta_postTC_RC_FG_sbPL.cpp' || echo './'`pla/eRungeKutta/eRungeKutta_postTC_RC_FG_sbPL.cpp
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/eRungeKutta/run_network-eRungeKutta_preTC_RC_FG_negPL.o `test -f 'pla/eRungeKutta/eRungeKutta_preTC_RC_FG_negPL.cpp' || echo './'`pla/eRungeKutta/eRungeKutta_preTC_RC_FG_negPL.cpp
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/eRungeKutta/run_network-eRungeKutta_preTC_RC_FG_rbPL.o `test -f 'pla/eRungeKutta/eRungeKutta_preTC_RC_FG_rbPL.cpp' || echo './'`pla/eRungeKutta/eRungeKutta_preTC_RC_FG_rbPL.cpp
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/eRungeKutta/run_network-eRungeKutta_preTC_RC_FG_sbPL.o `test -f 'pla/eRungeKutta/eRungeKutta_preTC_RC_FG_sbPL.cpp' || echo './'`pla/eRungeKutta/eRungeKutta_preTC_RC_FG_sbPL.cpp
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/eRungeKutta/base/run_network-eRungeKutta_TC_RC_FG_PL.o `test -f 'pla/eRungeKutta/base/eRungeKutta_TC_RC_FG_PL.cpp' || echo './'`pla/eRungeKutta/base/eRungeKutta_TC_RC_FG_PL.cpp
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/eRungeKutta/base/run_network-eRungeKutta_TC_RC_FG_rbPL.o `test -f 'pla/eRungeKutta/base/eRungeKutta_TC_RC_FG_rbPL.cpp' || echo './'`pla/eRungeKutta/base/eRungeKutta_TC_RC_FG_rbPL.cpp
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/eRungeKutta/base/run_network-eRungeKutta_TC_RC_FG_sbPL.o `test -f 'pla/eRungeKutta/base/eRungeKutta_TC_RC_FG_sbPL.cpp' || echo './'`pla/eRungeKutta/base/eRungeKutta_TC_RC_FG_sbPL.cpp
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/eRungeKutta/util/run_network-binomialCorrector_RK.o `test -f 'pla/eRungeKutta/util/binomialCorrector_RK.cpp' || echo './'`pla/eRungeKutta/util/binomialCorrector_RK.cpp
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/eRungeKutta/util/run_network-aEff_Calculator.o `test -f 'pla/eRungeKutta/util/aEff_Calculator.cpp' || echo './'`pla/eRungeKutta/util/aEff_Calculator.cpp
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/eRungeKutta/util/run_network-butcherTableau.o `test -f 'pla/eRungeKutta/util/butcherTableau.cpp' || echo './'`pla/eRungeKutta/util/butcherTableau.cpp
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/fEuler/run_network-fEuler_FG.o `test -f 'pla/fEuler/fEuler_FG.cpp' || echo './'`pla/fEuler/fEuler_FG.cpp
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/fEuler/run_network-fEulerPreleapRB_TC.o `test -f 'pla/fEuler/fEulerPreleapRB_TC.cpp' || echo './'`pla/fEuler/fEulerPreleapRB_TC.cpp
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/fEuler/run_network-fEulerPreleapSB_TC.o `test -f 'pla/fEuler/fEulerPreleapSB_TC.cpp' || echo './'`pla/fEuler/fEulerPreleapSB_TC.cpp
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/fEuler/run_network-fEulerRB_TC_PL.o `test -f 'pla/fEuler/fEulerRB_TC_PL.cpp' || echo './'`pla/fEuler/fEulerRB_TC_PL.cpp
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/fEuler/run_network-fEulerRB_PL.o `test -f 'pla/fEuler/fEulerRB_PL.cpp' || echo './'`pla/fEuler/fEulerRB_PL.cpp
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/fEuler/run_network-fEuler_RC.o `test -f 'pla/fEuler/fEuler_RC.cpp' || echo './'`pla/fEuler/fEuler_RC.cpp
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/fEuler/run_network-fEulerSB_PL.o `test -f 'pla/fEuler/fEulerSB_PL.cpp' || echo './'`pla/fEuler/fEulerSB_PL.cpp
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/fEuler/run_network-fEulerSB_TC_PL.o `test -f 'pla/fEuler/fEulerSB_TC_PL.cpp' || echo './'`pla/fEuler/fEulerSB_TC_PL.cpp
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/util/run_network-negPopChecker.o `test -f 'pla/util/negPopChecker.cpp' || echo './'`pla/util/negPopChecker.cpp
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/util/run_network-g_Getter.o `test -f 'pla/util/g_Getter.cpp' || echo './'`pla/util/g_Getter.cpp
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/util/run_network-preleap_TC.o `test -f 'pla/util/preleap_TC.cpp' || echo './'`pla/util/preleap_TC.cpp
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/util/run_network-rbChecker.o `test -f 'pla/util/rbChecker.cpp' || echo './'`pla/util/rbChecker.cpp
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/util/run_network-sbChecker.o `test -f 'pla/util/sbChecker.cpp' || echo './'`pla/util/sbChecker.cpp
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o pla/util/run_network-fixed_TC.o `test -f 'pla/util/fixed_TC.cpp' || echo './'`pla/util/fixed_TC.cpp
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o util/run_network-rand.o `test -f 'util/rand.cpp' || echo './'`util/rand.cpp
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o util/MTrand/run_network-mtrand.o `test -f 'util/MTrand/mtrand.cpp' || echo './'`util/MTrand/mtrand.cpp
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o util/run_network-conversion.o `test -f 'util/conversion.cpp' || echo './'`util/conversion.cpp
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
g++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I../muparser_v2_2_4/include -I../cvode-2.6.0/include -Iutil/mathutils -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -c -o util/rand2/run_network-rand2.o `test -f 'util/rand2/rand2.cpp' || echo './'`util/rand2/rand2.cpp
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/cabs.lo util/mathutils/cabs.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/cabs.c -fPIC -DPIC -o util/mathutils/.libs/cabs.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/cabs.c -o util/mathutils/cabs.o >/dev/null 2>&1
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
In file included from util/mathutils/cabs.c:1:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/allocate.lo util/mathutils/allocate.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/allocate.c -fPIC -DPIC -o util/mathutils/.libs/allocate.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/allocate.c -o util/mathutils/allocate.o >/dev/null 2>&1
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
util/mathutils/allocate.c: In function 'ALLOC_MATRIX':
util/mathutils/allocate.c:9:20: warning: unused variable 'j' [-Wunused-variable]
9 | register int i,j;
| ^
util/mathutils/allocate.c: In function 'IALLOC_MATRIX':
util/mathutils/allocate.c:100:20: warning: unused variable 'j' [-Wunused-variable]
100 | register int i,j;
| ^
util/mathutils/allocate.c: In function 'ZALLOC_MATRIX':
util/mathutils/allocate.c:191:20: warning: unused variable 'j' [-Wunused-variable]
191 | register int i,j;
| ^
In file included from util/mathutils/allocate.c:1:
util/mathutils/mathutils.h: At top level:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/cadd.lo util/mathutils/cadd.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/cadd.c -fPIC -DPIC -o util/mathutils/.libs/cadd.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/cadd.c -o util/mathutils/cadd.o >/dev/null 2>&1
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
In file included from util/mathutils/cadd.c:1:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/cconj.lo util/mathutils/cconj.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/cconj.c -fPIC -DPIC -o util/mathutils/.libs/cconj.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/cconj.c -o util/mathutils/cconj.o >/dev/null 2>&1
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
In file included from util/mathutils/cconj.c:1:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/cmult.lo util/mathutils/cmult.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/cmult.c -fPIC -DPIC -o util/mathutils/.libs/cmult.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/cmult.c -o util/mathutils/cmult.o >/dev/null 2>&1
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
In file included from util/mathutils/cmult.c:1:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/complex_zero.lo util/mathutils/complex_zero.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/complex_zero.c -fPIC -DPIC -o util/mathutils/.libs/complex_zero.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/complex_zero.c -o util/mathutils/complex_zero.o >/dev/null 2>&1
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
In file included from util/mathutils/complex_zero.c:2:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/copy_vector.lo util/mathutils/copy_vector.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/copy_vector.c -fPIC -DPIC -o util/mathutils/.libs/copy_vector.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/copy_vector.c -o util/mathutils/copy_vector.o >/dev/null 2>&1
In file included from util/mathutils/copy_vector.c:1:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/cprob.lo util/mathutils/cprob.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/cprob.c -fPIC -DPIC -o util/mathutils/.libs/cprob.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/cprob.c -o util/mathutils/cprob.o >/dev/null 2>&1
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
In file included from util/mathutils/cprob.c:1:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/csub.lo util/mathutils/csub.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/csub.c -fPIC -DPIC -o util/mathutils/.libs/csub.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/csub.c -o util/mathutils/csub.o >/dev/null 2>&1
In file included from util/mathutils/csub.c:1:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/dotp.lo util/mathutils/dotp.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/dotp.c -fPIC -DPIC -o util/mathutils/.libs/dotp.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/dotp.c -o util/mathutils/dotp.o >/dev/null 2>&1
In file included from util/mathutils/dotp.c:1:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/eigensystem.lo util/mathutils/eigensystem.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/eigensystem.c -fPIC -DPIC -o util/mathutils/.libs/eigensystem.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/eigensystem.c -o util/mathutils/eigensystem.o >/dev/null 2>&1
In file included from util/mathutils/eigensystem.c:1:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/expi.lo util/mathutils/expi.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/expi.c -fPIC -DPIC -o util/mathutils/.libs/expi.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/expi.c -o util/mathutils/expi.o >/dev/null 2>&1
In file included from util/mathutils/expi.c:1:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/gram_schmidt.lo util/mathutils/gram_schmidt.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/gram_schmidt.c -fPIC -DPIC -o util/mathutils/.libs/gram_schmidt.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/gram_schmidt.c -o util/mathutils/gram_schmidt.o >/dev/null 2>&1
In file included from util/mathutils/gram_schmidt.c:1:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/herm_matrix_mult.lo util/mathutils/herm_matrix_mult.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/herm_matrix_mult.c -fPIC -DPIC -o util/mathutils/.libs/herm_matrix_mult.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/herm_matrix_mult.c -o util/mathutils/herm_matrix_mult.o >/dev/null 2>&1
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
In file included from util/mathutils/herm_matrix_mult.c:1:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/herm_matrix_vector_mult.lo util/mathutils/herm_matrix_vector_mult.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/herm_matrix_vector_mult.c -fPIC -DPIC -o util/mathutils/.libs/herm_matrix_vector_mult.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/herm_matrix_vector_mult.c -o util/mathutils/herm_matrix_vector_mult.o >/dev/null 2>&1
In file included from util/mathutils/herm_matrix_vector_mult.c:1:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/icmult.lo util/mathutils/icmult.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/icmult.c -fPIC -DPIC -o util/mathutils/.libs/icmult.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/icmult.c -o util/mathutils/icmult.o >/dev/null 2>&1
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
In file included from util/mathutils/icmult.c:1:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/init.lo util/mathutils/init.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/init.c -fPIC -DPIC -o util/mathutils/.libs/init.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/init.c -o util/mathutils/init.o >/dev/null 2>&1
In file included from util/mathutils/init.c:1:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/integration.lo util/mathutils/integration.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/integration.c -fPIC -DPIC -o util/mathutils/.libs/integration.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/integration.c -o util/mathutils/integration.o >/dev/null 2>&1
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
In file included from util/mathutils/integration.c:1:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/linsolve.lo util/mathutils/linsolve.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/linsolve.c -fPIC -DPIC -o util/mathutils/.libs/linsolve.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/linsolve.c -o util/mathutils/linsolve.o >/dev/null 2>&1
util/mathutils/linsolve.c: In function 'LINSOLVE':
util/mathutils/linsolve.c:16:20: warning: unused variable 'j' [-Wunused-variable]
16 | register int i,j;
| ^
util/mathutils/linsolve.c:16:18: warning: unused variable 'i' [-Wunused-variable]
16 | register int i,j;
| ^
In file included from util/mathutils/linsolve.c:1:
util/mathutils/mathutils.h: At top level:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/matherr.lo util/mathutils/matherr.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/matherr.c -fPIC -DPIC -o util/mathutils/.libs/matherr.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/matherr.c -o util/mathutils/matherr.o >/dev/null 2>&1
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
In file included from util/mathutils/matherr.c:1:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/matrix_add.lo util/mathutils/matrix_add.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/matrix_add.c -fPIC -DPIC -o util/mathutils/.libs/matrix_add.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/matrix_add.c -o util/mathutils/matrix_add.o >/dev/null 2>&1
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
In file included from util/mathutils/matrix_add.c:1:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/matrix_elt.lo util/mathutils/matrix_elt.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/matrix_elt.c -fPIC -DPIC -o util/mathutils/.libs/matrix_elt.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/matrix_elt.c -o util/mathutils/matrix_elt.o >/dev/null 2>&1
In file included from util/mathutils/matrix_elt.c:1:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/matrix_mult.lo util/mathutils/matrix_mult.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/matrix_mult.c -fPIC -DPIC -o util/mathutils/.libs/matrix_mult.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/matrix_mult.c -o util/mathutils/matrix_mult.o >/dev/null 2>&1
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
In file included from util/mathutils/matrix_mult.c:1:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/matrix_sub.lo util/mathutils/matrix_sub.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/matrix_sub.c -fPIC -DPIC -o util/mathutils/.libs/matrix_sub.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/matrix_sub.c -o util/mathutils/matrix_sub.o >/dev/null 2>&1
In file included from util/mathutils/matrix_sub.c:1:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/matrix_transpose.lo util/mathutils/matrix_transpose.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/matrix_transpose.c -fPIC -DPIC -o util/mathutils/.libs/matrix_transpose.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/matrix_transpose.c -o util/mathutils/matrix_transpose.o >/dev/null 2>&1
In file included from util/mathutils/matrix_transpose.c:1:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/matrix_vector_mult.lo util/mathutils/matrix_vector_mult.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/matrix_vector_mult.c -fPIC -DPIC -o util/mathutils/.libs/matrix_vector_mult.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/matrix_vector_mult.c -o util/mathutils/matrix_vector_mult.o >/dev/null 2>&1
In file included from util/mathutils/matrix_vector_mult.c:1:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/matrixexp.lo util/mathutils/matrixexp.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/matrixexp.c -fPIC -DPIC -o util/mathutils/.libs/matrixexp.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/matrixexp.c -o util/mathutils/matrixexp.o >/dev/null 2>&1
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
In file included from util/mathutils/matrixexp.c:5:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/norm.lo util/mathutils/norm.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/norm.c -fPIC -DPIC -o util/mathutils/.libs/norm.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/norm.c -o util/mathutils/norm.o >/dev/null 2>&1
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
util/mathutils/norm.c: In function 'NORM':
util/mathutils/norm.c:14:12: warning: unused variable 'norm' [-Wunused-variable]
14 | double norm;
| ^~~~
In file included from util/mathutils/norm.c:1:
util/mathutils/mathutils.h: At top level:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/minimum.lo util/mathutils/minimum.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/minimum.c -fPIC -DPIC -o util/mathutils/.libs/minimum.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/minimum.c -o util/mathutils/minimum.o >/dev/null 2>&1
util/mathutils/minimum.c: In function 'MIN_BRACKET':
util/mathutils/minimum.c:17:26: warning: unused variable 'dum' [-Wunused-variable]
17 | double ulim,u,r,q,fu,dum;
| ^~~
In file included from util/mathutils/minimum.c:3:
util/mathutils/mathutils.h: At top level:
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
util/mathutils/minimum.c: In function 'MIN_FIND':
util/mathutils/minimum.c:117:38: warning: 'e' may be used uninitialized [-Wmaybe-uninitialized]
117 | if (fabs(p) >= fabs(0.5*q*etemp) || p <= q*(a-x) || p >= q*(b-x))
| ~~~~~^~~~~~
util/mathutils/minimum.c:95:12: note: 'e' was declared here
95 | double e=0.0;
| ^
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/normsq.lo util/mathutils/normsq.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/normsq.c -fPIC -DPIC -o util/mathutils/.libs/normsq.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/normsq.c -o util/mathutils/normsq.o >/dev/null 2>&1
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
util/mathutils/normsq.c: In function 'NORMSQ':
util/mathutils/normsq.c:13:12: warning: unused variable 'norm' [-Wunused-variable]
13 | double norm;
| ^~~~
In file included from util/mathutils/normsq.c:1:
util/mathutils/mathutils.h: At top level:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/project.lo util/mathutils/project.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/project.c -fPIC -DPIC -o util/mathutils/.libs/project.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/project.c -o util/mathutils/project.o >/dev/null 2>&1
In file included from util/mathutils/project.c:1:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/random.lo util/mathutils/random.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/random.c -fPIC -DPIC -o util/mathutils/.libs/random.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/random.c -o util/mathutils/random.o >/dev/null 2>&1
In file included from util/mathutils/random.c:1:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/rcmult.lo util/mathutils/rcmult.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/rcmult.c -fPIC -DPIC -o util/mathutils/.libs/rcmult.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/rcmult.c -o util/mathutils/rcmult.o >/dev/null 2>&1
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
In file included from util/mathutils/rcmult.c:1:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/rect_transpose.lo util/mathutils/rect_transpose.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/rect_transpose.c -fPIC -DPIC -o util/mathutils/.libs/rect_transpose.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/rect_transpose.c -o util/mathutils/rect_transpose.o >/dev/null 2>&1
util/mathutils/rect_transpose.c: In function 'RECT_TRANSPOSE':
util/mathutils/rect_transpose.c:5:26: warning: unused variable 'Atptr' [-Wunused-variable]
5 | double **At, *Aptr, *Atptr;
| ^~~~~
util/mathutils/rect_transpose.c:5:19: warning: unused variable 'Aptr' [-Wunused-variable]
5 | double **At, *Aptr, *Atptr;
| ^~~~
In file included from util/mathutils/rect_transpose.c:1:
util/mathutils/mathutils.h: At top level:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/roots.lo util/mathutils/roots.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/roots.c -fPIC -DPIC -o util/mathutils/.libs/roots.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/roots.c -o util/mathutils/roots.o >/dev/null 2>&1
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
In file included from util/mathutils/roots.c:1:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
util/mathutils/roots.c: In function 'ROOT_FIND':
util/mathutils/roots.c:69:24: warning: 'e' may be used uninitialized [-Wmaybe-uninitialized]
69 | min2=fabs(e*q);
| ~^~
util/mathutils/roots.c:32:29: note: 'e' was declared here
32 | double a=x1,b=x2,c=x2,d,e,min1,min2;
| ^
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/scale_vector.lo util/mathutils/scale_vector.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/scale_vector.c -fPIC -DPIC -o util/mathutils/.libs/scale_vector.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/scale_vector.c -o util/mathutils/scale_vector.o >/dev/null 2>&1
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
In file included from util/mathutils/scale_vector.c:1:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/runge-kutta.lo util/mathutils/runge-kutta.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/runge-kutta.c -fPIC -DPIC -o util/mathutils/.libs/runge-kutta.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/runge-kutta.c -o util/mathutils/runge-kutta.o >/dev/null 2>&1
In file included from util/mathutils/runge-kutta.c:1:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/sum_vector.lo util/mathutils/sum_vector.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/sum_vector.c -fPIC -DPIC -o util/mathutils/.libs/sum_vector.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/sum_vector.c -o util/mathutils/sum_vector.o >/dev/null 2>&1
In file included from util/mathutils/sum_vector.c:1:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/splines.lo util/mathutils/splines.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/splines.c -fPIC -DPIC -o util/mathutils/.libs/splines.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/splines.c -o util/mathutils/splines.o >/dev/null 2>&1
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
In file included from util/mathutils/splines.c:1:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/sym_linsolve.lo util/mathutils/sym_linsolve.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/sym_linsolve.c -fPIC -DPIC -o util/mathutils/.libs/sym_linsolve.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/sym_linsolve.c -o util/mathutils/sym_linsolve.o >/dev/null 2>&1
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
In file included from util/mathutils/sym_linsolve.c:1:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/sym_matrix_mult.lo util/mathutils/sym_matrix_mult.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/sym_matrix_mult.c -fPIC -DPIC -o util/mathutils/.libs/sym_matrix_mult.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/sym_matrix_mult.c -o util/mathutils/sym_matrix_mult.o >/dev/null 2>&1
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
In file included from util/mathutils/sym_matrix_mult.c:1:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/sym_matrix_vector_mult.lo util/mathutils/sym_matrix_vector_mult.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/sym_matrix_vector_mult.c -fPIC -DPIC -o util/mathutils/.libs/sym_matrix_vector_mult.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/sym_matrix_vector_mult.c -o util/mathutils/sym_matrix_vector_mult.o >/dev/null 2>&1
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
In file included from util/mathutils/sym_matrix_vector_mult.c:1:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/sympos_linsolve.lo util/mathutils/sympos_linsolve.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/sympos_linsolve.c -fPIC -DPIC -o util/mathutils/.libs/sympos_linsolve.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/sympos_linsolve.c -o util/mathutils/sympos_linsolve.o >/dev/null 2>&1
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
In file included from util/mathutils/sympos_linsolve.c:1:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/svd.lo util/mathutils/svd.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/svd.c -fPIC -DPIC -o util/mathutils/.libs/svd.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/svd.c -o util/mathutils/svd.o >/dev/null 2>&1
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
In file included from util/mathutils/svd.c:2:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/test_transpose.lo util/mathutils/test_transpose.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/test_transpose.c -fPIC -DPIC -o util/mathutils/.libs/test_transpose.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/test_transpose.c -o util/mathutils/test_transpose.o >/dev/null 2>&1
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
util/mathutils/test_transpose.c:3:1: warning: return type defaults to 'int' [-Wimplicit-int]
3 | main()
| ^~~~
In file included from util/mathutils/test_transpose.c:1:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/testdummy.lo util/mathutils/testdummy.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/testdummy.c -fPIC -DPIC -o util/mathutils/.libs/testdummy.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/testdummy.c -o util/mathutils/testdummy.o >/dev/null 2>&1
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
util/mathutils/testdummy.c:3:1: warning: return type defaults to 'int' [-Wimplicit-int]
3 | main(){
| ^~~~
util/mathutils/testdummy.c: In function 'main':
util/mathutils/testdummy.c:5:9: warning: unused variable 'incx' [-Wunused-variable]
5 | int incx=1;
| ^~~~
util/mathutils/testdummy.c:9:5: warning: ignoring return value of 'scanf' declared with attribute 'warn_unused_result' [-Wunused-result]
9 | scanf("%d", &n);
| ^~~~~~~~~~~~~~~
util/mathutils/testdummy.c:15:9: warning: ignoring return value of 'scanf' declared with attribute 'warn_unused_result' [-Wunused-result]
15 | scanf("%lf", x+i);
| ^~~~~~~~~~~~~~~~~
In file included from util/mathutils/testdummy.c:1:
util/mathutils/mathutils.h: At top level:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/testspline.lo util/mathutils/testspline.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/testspline.c -fPIC -DPIC -o util/mathutils/.libs/testspline.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/testspline.c -o util/mathutils/testspline.o >/dev/null 2>&1
util/mathutils/testspline.c:7:1: warning: return type defaults to 'int' [-Wimplicit-int]
7 | main()
| ^~~~
In file included from util/mathutils/testspline.c:1:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/testgram.lo util/mathutils/testgram.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/testgram.c -fPIC -DPIC -o util/mathutils/.libs/testgram.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/testgram.c -o util/mathutils/testgram.o >/dev/null 2>&1
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
util/mathutils/testgram.c:3:1: warning: return type defaults to 'int' [-Wimplicit-int]
3 | main(int argc, char *argv[]){
| ^~~~
util/mathutils/testgram.c: In function 'main':
util/mathutils/testgram.c:7:63: warning: unused variable 'V' [-Wunused-variable]
7 | double **A, **At, **G, **Gt, **GtG, **U, **Ut, **UtU, *w, **V, norm;
| ^
util/mathutils/testgram.c:7:58: warning: unused variable 'w' [-Wunused-variable]
7 | double **A, **At, **G, **Gt, **GtG, **U, **Ut, **UtU, *w, **V, norm;
| ^
util/mathutils/testgram.c:7:52: warning: unused variable 'UtU' [-Wunused-variable]
7 | double **A, **At, **G, **Gt, **GtG, **U, **Ut, **UtU, *w, **V, norm;
| ^~~
util/mathutils/testgram.c:7:46: warning: unused variable 'Ut' [-Wunused-variable]
7 | double **A, **At, **G, **Gt, **GtG, **U, **Ut, **UtU, *w, **V, norm;
| ^~
util/mathutils/testgram.c:5:7: warning: unused variable 'nr' [-Wunused-variable]
5 | int nr, n_run;
| ^~
In file included from util/mathutils/testgram.c:1:
util/mathutils/mathutils.h: At top level:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/testsvd.lo util/mathutils/testsvd.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/testsvd.c -fPIC -DPIC -o util/mathutils/.libs/testsvd.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/testsvd.c -o util/mathutils/testsvd.o >/dev/null 2>&1
util/mathutils/testsvd.c:3:1: warning: return type defaults to 'int' [-Wimplicit-int]
3 | main(int argc, char *argv[]){
| ^~~~
util/mathutils/testsvd.c: In function 'main':
util/mathutils/testsvd.c:7:28: warning: unused variable 'GtG' [-Wunused-variable]
7 | double **A, **G, **Gt, **GtG, **U, **Ut, **UtU, *w, **V, norm;
| ^~~
util/mathutils/testsvd.c:7:22: warning: unused variable 'Gt' [-Wunused-variable]
7 | double **A, **G, **Gt, **GtG, **U, **Ut, **UtU, *w, **V, norm;
| ^~
util/mathutils/testsvd.c:7:17: warning: unused variable 'G' [-Wunused-variable]
7 | double **A, **G, **Gt, **GtG, **U, **Ut, **UtU, *w, **V, norm;
| ^
In file included from util/mathutils/testsvd.c:1:
util/mathutils/mathutils.h: At top level:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/vector_add.lo util/mathutils/vector_add.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/vector_add.c -fPIC -DPIC -o util/mathutils/.libs/vector_add.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/vector_add.c -o util/mathutils/vector_add.o >/dev/null 2>&1
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
In file included from util/mathutils/vector_add.c:1:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/vector_dist.lo util/mathutils/vector_dist.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/vector_dist.c -fPIC -DPIC -o util/mathutils/.libs/vector_dist.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/vector_dist.c -o util/mathutils/vector_dist.o >/dev/null 2>&1
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
In file included from util/mathutils/vector_dist.c:1:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/zcopy_vector.lo util/mathutils/zcopy_vector.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zcopy_vector.c -fPIC -DPIC -o util/mathutils/.libs/zcopy_vector.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zcopy_vector.c -o util/mathutils/zcopy_vector.o >/dev/null 2>&1
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
In file included from util/mathutils/zcopy_vector.c:1:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/zdotc.lo util/mathutils/zdotc.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zdotc.c -fPIC -DPIC -o util/mathutils/.libs/zdotc.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zdotc.c -o util/mathutils/zdotc.o >/dev/null 2>&1
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
In file included from util/mathutils/zdotc.c:1:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/zdotu.lo util/mathutils/zdotu.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zdotu.c -fPIC -DPIC -o util/mathutils/.libs/zdotu.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zdotu.c -o util/mathutils/zdotu.o >/dev/null 2>&1
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
In file included from util/mathutils/zdotu.c:1:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/testutils.lo util/mathutils/testutils.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/testutils.c -fPIC -DPIC -o util/mathutils/.libs/testutils.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/testutils.c -o util/mathutils/testutils.o >/dev/null 2>&1
util/mathutils/testutils.c:6:1: warning: return type defaults to 'int' [-Wimplicit-int]
6 | main (int argc, char *argv[])
| ^~~~
util/mathutils/testutils.c: In function 'main':
util/mathutils/testutils.c:15:12: warning: unused variable 'z1' [-Wunused-variable]
15 | dcomplex z1;
| ^~
util/mathutils/testutils.c:10:7: warning: unused variable 'seed' [-Wunused-variable]
10 | int seed;
| ^~~~
util/mathutils/testutils.c:8:11: warning: unused variable 'k' [-Wunused-variable]
8 | int i,j,k;
| ^
In file included from util/mathutils/testutils.c:2:
util/mathutils/mathutils.h: At top level:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/zmatrix_add.lo util/mathutils/zmatrix_add.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zmatrix_add.c -fPIC -DPIC -o util/mathutils/.libs/zmatrix_add.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zmatrix_add.c -o util/mathutils/zmatrix_add.o >/dev/null 2>&1
In file included from util/mathutils/zmatrix_add.c:1:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/zmatrix_mult.lo util/mathutils/zmatrix_mult.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zmatrix_mult.c -fPIC -DPIC -o util/mathutils/.libs/zmatrix_mult.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zmatrix_mult.c -o util/mathutils/zmatrix_mult.o >/dev/null 2>&1
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
In file included from util/mathutils/zmatrix_mult.c:1:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/zmatrix_sub.lo util/mathutils/zmatrix_sub.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zmatrix_sub.c -fPIC -DPIC -o util/mathutils/.libs/zmatrix_sub.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zmatrix_sub.c -o util/mathutils/zmatrix_sub.o >/dev/null 2>&1
In file included from util/mathutils/zmatrix_sub.c:1:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/zmatrix_transpose.lo util/mathutils/zmatrix_transpose.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zmatrix_transpose.c -fPIC -DPIC -o util/mathutils/.libs/zmatrix_transpose.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zmatrix_transpose.c -o util/mathutils/zmatrix_transpose.o >/dev/null 2>&1
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
In file included from util/mathutils/zmatrix_transpose.c:1:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/zmatrix_vector_mult.lo util/mathutils/zmatrix_vector_mult.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zmatrix_vector_mult.c -fPIC -DPIC -o util/mathutils/.libs/zmatrix_vector_mult.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zmatrix_vector_mult.c -o util/mathutils/zmatrix_vector_mult.o >/dev/null 2>&1
In file included from util/mathutils/zmatrix_vector_mult.c:1:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/znorm.lo util/mathutils/znorm.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/znorm.c -fPIC -DPIC -o util/mathutils/.libs/znorm.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/znorm.c -o util/mathutils/znorm.o >/dev/null 2>&1
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
In file included from util/mathutils/znorm.c:1:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/znormsq.lo util/mathutils/znormsq.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/znormsq.c -fPIC -DPIC -o util/mathutils/.libs/znormsq.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/znormsq.c -o util/mathutils/znormsq.o >/dev/null 2>&1
In file included from util/mathutils/znormsq.c:1:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/zrscale_vector.lo util/mathutils/zrscale_vector.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zrscale_vector.c -fPIC -DPIC -o util/mathutils/.libs/zrscale_vector.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zrscale_vector.c -o util/mathutils/zrscale_vector.o >/dev/null 2>&1
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
In file included from util/mathutils/zrscale_vector.c:1:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/zscale_vector.lo util/mathutils/zscale_vector.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zscale_vector.c -fPIC -DPIC -o util/mathutils/.libs/zscale_vector.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zscale_vector.c -o util/mathutils/zscale_vector.o >/dev/null 2>&1
In file included from util/mathutils/zscale_vector.c:1:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/zsum_vector.lo util/mathutils/zsum_vector.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zsum_vector.c -fPIC -DPIC -o util/mathutils/.libs/zsum_vector.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zsum_vector.c -o util/mathutils/zsum_vector.o >/dev/null 2>&1
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
In file included from util/mathutils/zsum_vector.c:1:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o util/mathutils/zsym_linsolve.lo util/mathutils/zsym_linsolve.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zsym_linsolve.c -fPIC -DPIC -o util/mathutils/.libs/zsym_linsolve.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c util/mathutils/zsym_linsolve.c -o util/mathutils/zsym_linsolve.o >/dev/null 2>&1
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
In file included from util/mathutils/zsym_linsolve.c:1:
util/mathutils/mathutils.h:364:15: warning: 'dswap' defined but not used [-Wunused-variable]
364 | static double dswap;
| ^~~~~
util/mathutils/mathutils.h:359:20: warning: 'imarg2' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:359:12: warning: 'imarg1' defined but not used [-Wunused-variable]
359 | static int imarg1, imarg2;
| ^~~~~~
util/mathutils/mathutils.h:356:22: warning: 'marg2' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:356:15: warning: 'marg1' defined but not used [-Wunused-variable]
356 | static double marg1, marg2;
| ^~~~~
util/mathutils/mathutils.h:354:12: warning: 'isqrarg' defined but not used [-Wunused-variable]
354 | static int isqrarg;
| ^~~~~~~
util/mathutils/mathutils.h:352:15: warning: 'sqrarg' defined but not used [-Wunused-variable]
352 | static double sqrarg;
| ^~~~~~
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
/bin/sh ../libtool --tag=CC --mode=link gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/bionetgen-2.8.4/.package_note-bionetgen-2.8.4-1.fc37.x86_64.ld -o libmathutils.la util/mathutils/allocate.lo util/mathutils/cabs.lo util/mathutils/cadd.lo util/mathutils/cconj.lo util/mathutils/cmult.lo util/mathutils/complex_zero.lo util/mathutils/copy_vector.lo util/mathutils/cprob.lo util/mathutils/csub.lo util/mathutils/dotp.lo util/mathutils/eigensystem.lo util/mathutils/expi.lo util/mathutils/gram_schmidt.lo util/mathutils/herm_matrix_mult.lo util/mathutils/herm_matrix_vector_mult.lo util/mathutils/icmult.lo util/mathutils/init.lo util/mathutils/integration.lo util/mathutils/linsolve.lo util/mathutils/matherr.lo util/mathutils/matrix_add.lo util/mathutils/matrix_elt.lo util/mathutils/matrix_mult.lo util/mathutils/matrix_sub.lo util/mathutils/matrix_transpose.lo util/mathutils/matrix_vector_mult.lo util/mathutils/matrixexp.lo util/mathutils/minimum.lo util/mathutils/norm.lo util/mathutils/normsq.lo util/mathutils/project.lo util/mathutils/random.lo util/mathutils/rcmult.lo util/mathutils/rect_transpose.lo util/mathutils/roots.lo util/mathutils/runge-kutta.lo util/mathutils/scale_vector.lo util/mathutils/splines.lo util/mathutils/sum_vector.lo util/mathutils/svd.lo util/mathutils/sym_linsolve.lo util/mathutils/sym_matrix_mult.lo util/mathutils/sym_matrix_vector_mult.lo util/mathutils/sympos_linsolve.lo util/mathutils/test_transpose.lo util/mathutils/testdummy.lo util/mathutils/testgram.lo util/mathutils/testspline.lo util/mathutils/testsvd.lo util/mathutils/testutils.lo util/mathutils/vector_add.lo util/mathutils/vector_dist.lo util/mathutils/zcopy_vector.lo util/mathutils/zdotc.lo util/mathutils/zdotu.lo util/mathutils/zmatrix_add.lo util/mathutils/zmatrix_mult.lo util/mathutils/zmatrix_sub.lo util/mathutils/zmatrix_transpose.lo util/mathutils/zmatrix_vector_mult.lo util/mathutils/znorm.lo util/mathutils/znormsq.lo util/mathutils/zrscale_vector.lo util/mathutils/zscale_vector.lo util/mathutils/zsum_vector.lo util/mathutils/zsym_linsolve.lo
libtool: link: ar cr .libs/libmathutils.a util/mathutils/.libs/allocate.o util/mathutils/.libs/cabs.o util/mathutils/.libs/cadd.o util/mathutils/.libs/cconj.o util/mathutils/.libs/cmult.o util/mathutils/.libs/complex_zero.o util/mathutils/.libs/copy_vector.o util/mathutils/.libs/cprob.o util/mathutils/.libs/csub.o util/mathutils/.libs/dotp.o util/mathutils/.libs/eigensystem.o util/mathutils/.libs/expi.o util/mathutils/.libs/gram_schmidt.o util/mathutils/.libs/herm_matrix_mult.o util/mathutils/.libs/herm_matrix_vector_mult.o util/mathutils/.libs/icmult.o util/mathutils/.libs/init.o util/mathutils/.libs/integration.o util/mathutils/.libs/linsolve.o util/mathutils/.libs/matherr.o util/mathutils/.libs/matrix_add.o util/mathutils/.libs/matrix_elt.o util/mathutils/.libs/matrix_mult.o util/mathutils/.libs/matrix_sub.o util/mathutils/.libs/matrix_transpose.o util/mathutils/.libs/matrix_vector_mult.o util/mathutils/.libs/matrixexp.o util/mathutils/.libs/minimum.o util/mathutils/.libs/norm.o util/mathutils/.libs/normsq.o util/mathutils/.libs/project.o util/mathutils/.libs/random.o util/mathutils/.libs/rcmult.o util/mathutils/.libs/rect_transpose.o util/mathutils/.libs/roots.o util/mathutils/.libs/runge-kutta.o util/mathutils/.libs/scale_vector.o util/mathutils/.libs/splines.o util/mathutils/.libs/sum_vector.o util/mathutils/.libs/svd.o util/mathutils/.libs/sym_linsolve.o util/mathutils/.libs/sym_matrix_mult.o util/mathutils/.libs/sym_matrix_vector_mult.o util/mathutils/.libs/sympos_linsolve.o util/mathutils/.libs/test_transpose.o util/mathutils/.libs/testdummy.o util/mathutils/.libs/testgram.o util/mathutils/.libs/testspline.o util/mathutils/.libs/testsvd.o util/mathutils/.libs/testutils.o util/mathutils/.libs/vector_add.o util/mathutils/.libs/vector_dist.o util/mathutils/.libs/zcopy_vector.o util/mathutils/.libs/zdotc.o util/mathutils/.libs/zdotu.o util/mathutils/.libs/zmatrix_add.o util/mathutils/.libs/zmatrix_mult.o util/mathutils/.libs/zmatrix_sub.o util/mathutils/.libs/zmatrix_transpose.o util/mathutils/.libs/zmatrix_vector_mult.o util/mathutils/.libs/znorm.o util/mathutils/.libs/znormsq.o util/mathutils/.libs/zrscale_vector.o util/mathutils/.libs/zscale_vector.o util/mathutils/.libs/zsum_vector.o util/mathutils/.libs/zsym_linsolve.o
libtool: link: ranlib .libs/libmathutils.a
libtool: link: ( cd ".libs" && rm -f "libmathutils.la" && ln -s "../libmathutils.la" "libmathutils.la" )
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
/bin/sh ../libtool --tag=CXX --mode=link g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/bionetgen-2.8.4/.package_note-bionetgen-2.8.4-1.fc37.x86_64.ld -o run_network run_network-network3.o run_network-network.o run_network-run_network.o model/run_network-function.o model/run_network-observable.o model/run_network-rateExpression.o model/run_network-reaction.o model/run_network-simpleSpecies.o model/rateExpressions/run_network-rateElementary.o model/rateExpressions/run_network-rateHill.o model/rateExpressions/run_network-rateMM.o model/rateExpressions/run_network-rateMuParser.o model/rateExpressions/run_network-rateSaturation.o model/reactions/run_network-bioNetGenRxn.o model/reactions/run_network-elementaryRxn.o model/reactions/run_network-functionalRxn.o model/reactions/run_network-hillRxn.o model/reactions/run_network-michaelisMentenRxn.o model/reactions/run_network-saturationRxn.o pla/run_network-PLA.o pla/base/run_network-firingGenerator.o pla/base/run_network-postleapChecker.o pla/base/run_network-rxnClassifier.o pla/base/run_network-tauCalculator.o pla/eRungeKutta/run_network-eRungeKutta_postTC_RC_FG_rbPL.o pla/eRungeKutta/run_network-eRungeKutta_postTC_RC_FG_sbPL.o pla/eRungeKutta/run_network-eRungeKutta_preTC_RC_FG_negPL.o pla/eRungeKutta/run_network-eRungeKutta_preTC_RC_FG_rbPL.o pla/eRungeKutta/run_network-eRungeKutta_preTC_RC_FG_sbPL.o pla/eRungeKutta/base/run_network-eRungeKutta_TC_RC_FG_PL.o pla/eRungeKutta/base/run_network-eRungeKutta_TC_RC_FG_rbPL.o pla/eRungeKutta/base/run_network-eRungeKutta_TC_RC_FG_sbPL.o pla/eRungeKutta/util/run_network-aEff_Calculator.o pla/eRungeKutta/util/run_network-binomialCorrector_RK.o pla/eRungeKutta/util/run_network-butcherTableau.o pla/fEuler/run_network-fEuler_FG.o pla/fEuler/run_network-fEulerPreleapRB_TC.o pla/fEuler/run_network-fEulerPreleapSB_TC.o pla/fEuler/run_network-fEulerRB_PL.o pla/fEuler/run_network-fEulerRB_TC_PL.o pla/fEuler/run_network-fEuler_RC.o pla/fEuler/run_network-fEulerSB_PL.o pla/fEuler/run_network-fEulerSB_TC_PL.o pla/util/run_network-g_Getter.o pla/util/run_network-negPopChecker.o pla/util/run_network-preleap_TC.o pla/util/run_network-rbChecker.o pla/util/run_network-sbChecker.o pla/util/run_network-fixed_TC.o util/run_network-conversion.o util/run_network-rand.o util/MTrand/run_network-mtrand.o util/rand2/run_network-rand2.o util/run_network-misc.o libmathutils.la ../cvode-2.6.0/src/nvec_ser/libsundials_nvecserial.la ../cvode-2.6.0/src/cvode/libsundials_cvode.la -lmuparser
libtool: link: g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wno-unused-variable -Wno-unused-function -Wno-unused-but-set-variable -Wno-maybe-uninitialized -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -Wl,-dT -Wl,/builddir/build/BUILD/bionetgen-2.8.4/.package_note-bionetgen-2.8.4-1.fc37.x86_64.ld -o run_network run_network-network3.o run_network-network.o run_network-run_network.o model/run_network-function.o model/run_network-observable.o model/run_network-rateExpression.o model/run_network-reaction.o model/run_network-simpleSpecies.o model/rateExpressions/run_network-rateElementary.o model/rateExpressions/run_network-rateHill.o model/rateExpressions/run_network-rateMM.o model/rateExpressions/run_network-rateMuParser.o model/rateExpressions/run_network-rateSaturation.o model/reactions/run_network-bioNetGenRxn.o model/reactions/run_network-elementaryRxn.o model/reactions/run_network-functionalRxn.o model/reactions/run_network-hillRxn.o model/reactions/run_network-michaelisMentenRxn.o model/reactions/run_network-saturationRxn.o pla/run_network-PLA.o pla/base/run_network-firingGenerator.o pla/base/run_network-postleapChecker.o pla/base/run_network-rxnClassifier.o pla/base/run_network-tauCalculator.o pla/eRungeKutta/run_network-eRungeKutta_postTC_RC_FG_rbPL.o pla/eRungeKutta/run_network-eRungeKutta_postTC_RC_FG_sbPL.o pla/eRungeKutta/run_network-eRungeKutta_preTC_RC_FG_negPL.o pla/eRungeKutta/run_network-eRungeKutta_preTC_RC_FG_rbPL.o pla/eRungeKutta/run_network-eRungeKutta_preTC_RC_FG_sbPL.o pla/eRungeKutta/base/run_network-eRungeKutta_TC_RC_FG_PL.o pla/eRungeKutta/base/run_network-eRungeKutta_TC_RC_FG_rbPL.o pla/eRungeKutta/base/run_network-eRungeKutta_TC_RC_FG_sbPL.o pla/eRungeKutta/util/run_network-aEff_Calculator.o pla/eRungeKutta/util/run_network-binomialCorrector_RK.o pla/eRungeKutta/util/run_network-butcherTableau.o pla/fEuler/run_network-fEuler_FG.o pla/fEuler/run_network-fEulerPreleapRB_TC.o pla/fEuler/run_network-fEulerPreleapSB_TC.o pla/fEuler/run_network-fEulerRB_PL.o pla/fEuler/run_network-fEulerRB_TC_PL.o pla/fEuler/run_network-fEuler_RC.o pla/fEuler/run_network-fEulerSB_PL.o pla/fEuler/run_network-fEulerSB_TC_PL.o pla/util/run_network-g_Getter.o pla/util/run_network-negPopChecker.o pla/util/run_network-preleap_TC.o pla/util/run_network-rbChecker.o pla/util/run_network-sbChecker.o pla/util/run_network-fixed_TC.o util/run_network-conversion.o util/run_network-rand.o util/MTrand/run_network-mtrand.o util/rand2/run_network-rand2.o util/run_network-misc.o ./.libs/libmathutils.a ../cvode-2.6.0/src/nvec_ser/.libs/libsundials_nvecserial.a ../cvode-2.6.0/src/cvode/.libs/libsundials_cvode.a -lm -lmuparser
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
+ popd
~/build/BUILD/bionetgen-2.8.4
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.953ozW
+ umask 022
+ cd /builddir/build/BUILD
+ '[' /builddir/build/BUILDROOT/bionetgen-2.8.4-1.fc37.x86_64 '!=' / ']'
+ rm -rf /builddir/build/BUILDROOT/bionetgen-2.8.4-1.fc37.x86_64
++ dirname /builddir/build/BUILDROOT/bionetgen-2.8.4-1.fc37.x86_64
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir /builddir/build/BUILDROOT/bionetgen-2.8.4-1.fc37.x86_64
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules'
+ export FCFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/bionetgen-2.8.4/.package_note-bionetgen-2.8.4-1.fc37.x86_64.ld'
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd bionetgen-2.8.4
+ /usr/bin/make install DESTDIR=/builddir/build/BUILDROOT/bionetgen-2.8.4-1.fc37.x86_64 'INSTALL=/usr/bin/install -p' -C bionetgen-BioNetGen-2.8.4/bng2/Network3/src
make: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
make[1]: Entering directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
/usr/bin/mkdir -p '/builddir/build/BUILDROOT/bionetgen-2.8.4-1.fc37.x86_64/usr/bin'
/bin/sh ../libtool --mode=install /usr/bin/install -p run_network '/builddir/build/BUILDROOT/bionetgen-2.8.4-1.fc37.x86_64/usr/bin'
libtool: install: /usr/bin/install -p run_network /builddir/build/BUILDROOT/bionetgen-2.8.4-1.fc37.x86_64/usr/bin/run_network
make[1]: Nothing to be done for 'install-data-am'.
make[1]: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
make: Leaving directory '/builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Network3/src'
+ mkdir -vp /builddir/build/BUILDROOT/bionetgen-2.8.4-1.fc37.x86_64/usr/share/perl5/vendor_perl/BioNetGen
mkdir: created directory '/builddir/build/BUILDROOT/bionetgen-2.8.4-1.fc37.x86_64/usr/share'
mkdir: created directory '/builddir/build/BUILDROOT/bionetgen-2.8.4-1.fc37.x86_64/usr/share/perl5'
mkdir: created directory '/builddir/build/BUILDROOT/bionetgen-2.8.4-1.fc37.x86_64/usr/share/perl5/vendor_perl'
mkdir: created directory '/builddir/build/BUILDROOT/bionetgen-2.8.4-1.fc37.x86_64/usr/share/perl5/vendor_perl/BioNetGen'
+ cp -r bionetgen-BioNetGen-2.8.4/bng2/Perl2 /builddir/build/BUILDROOT/bionetgen-2.8.4-1.fc37.x86_64/usr/share/perl5/vendor_perl/BioNetGen/
+ cp -r bionetgen-BioNetGen-2.8.4/bng2/BNG2.pl /builddir/build/BUILDROOT/bionetgen-2.8.4-1.fc37.x86_64/usr/share/perl5/vendor_perl/BioNetGen/
+ cp -a bionetgen-BioNetGen-2.8.4/bng2/Models2 /builddir/build/BUILDROOT/bionetgen-2.8.4-1.fc37.x86_64/usr/share/perl5/vendor_perl/BioNetGen/
+ rm -f /builddir/build/BUILDROOT/bionetgen-2.8.4-1.fc37.x86_64/usr/share/perl5/vendor_perl/BioNetGen/Models2/bin/run_network_x86_64-linux
+ rm -f /builddir/build/BUILDROOT/bionetgen-2.8.4-1.fc37.x86_64/usr/share/perl5/vendor_perl/BioNetGen/Models2/run_network
+ /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 2.8.4-1.fc37 --unique-debug-suffix -2.8.4-1.fc37.x86_64 --unique-debug-src-base bionetgen-2.8.4-1.fc37.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/bionetgen-2.8.4
extracting debug info from /builddir/build/BUILDROOT/bionetgen-2.8.4-1.fc37.x86_64/usr/bin/run_network
original debug info size: 7356kB, size after compression: 5428kB
/usr/bin/sepdebugcrcfix: Updated 1 CRC32s, 0 CRC32s did match.
1829 blocks
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/check-rpaths
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
+ /usr/lib/rpm/brp-remove-la-files
+ /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0
+ /usr/lib/rpm/redhat/brp-python-hardlink
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.mQIM1g
+ umask 022
+ cd /builddir/build/BUILD
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules'
+ export FCFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -Wl,-dT,/builddir/build/BUILD/bionetgen-2.8.4/.package_note-bionetgen-2.8.4-1.fc37.x86_64.ld'
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ '[' -f /usr/lib/rpm/generate-rpm-note.sh ']'
+ /usr/lib/rpm/generate-rpm-note.sh bionetgen 2.8.4-1.fc37 x86_64
+ cd bionetgen-2.8.4
~/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Models2 ~/build/BUILD/bionetgen-2.8.4
+ pushd bionetgen-BioNetGen-2.8.4/bng2/Models2
+ install -pm 755 ../Network3/src/run_network -D ./bin/run_network_x86_64-linux
+ install -pm 755 ../Network3/src/run_network -D ../bin/run_network_x86_64-linux
Running some tests ...
+ echo 'Running some tests ...'
+ ../BNG2.pl CaOscillate_Func.bngl CaOscillate_Sat.bngl catalysis.bngl egfr_net.bngl egfr_net_red.bngl egfr_path.bngl energy_example1.bngl fceri_ji.bngl test_continue.bngl
BioNetGen version 2.8.4
Reading from file CaOscillate_Func.bngl (level 0)
Read 17 parameters.
Read 4 molecule types.
Read 4 species.
Read 4 observable(s).
Read 8 reaction rule(s).
ACTION: generate_network( CaOscillate_Func )
Iteration 0: 4 species 0 rxns 0.00e+00 CPU s
Iteration 1: 4 species 8 rxns 1.00e-02 CPU s
Cumulative CPU time for each rule
Rule 1: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule 2: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule 3: 1 reactions 1.00e-02 CPU s 1.00e-02 CPU s/rxn
Rule 4: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule 5: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule 6: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule 7: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule 8: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Total : 8 reactions 1.00e-02 CPU s 1.25e-03 CPU s/rxn
Wrote network in net format to ./CaOscillate_Func.net.
CPU TIME: generate_network 0.01 s.
ACTION: simulate( method=>"cvode" )
Network simulation using cvode
WARNING: writeFile(): Overwriting existing file ./CaOscillate_Func.net.
Wrote network in net format to ./CaOscillate_Func.net.
Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Perl2/BNGAction.pm line 548.
Running run_network on full command: /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/bin/run_network_x86_64-linux -o ./CaOscillate_Func -p cvode -a 1e-12 -r 1e-12 --cdat 1 --fdat 0 -v -g ./CaOscillate_Func.net ./CaOscillate_Func.net 0.1 200
[simulation PID is: 15845]
run_network 3.0
Read 17 parameters from ./CaOscillate_Func.net
Read 4 species from ./CaOscillate_Func.net
Read 4 group(s) from ./CaOscillate_Func.net
Read 4 function(s) from ./CaOscillate_Func.net
Read 8 reaction(s) from ./CaOscillate_Func.net
8 reaction(s) have nonzero rate
Initialization took 0.00 CPU seconds
Propagating with cvode using dense LU
time n_steps n_deriv_calls
0.00 0 0
0.10 717 850
0.20 741 879
0.30 765 904
0.40 790 930
0.50 814 960
0.60 838 985
0.70 863 1015
0.80 887 1040
0.90 912 1067
1.00 936 1099
1.10 961 1129
1.20 993 1171
1.30 1025 1207
1.40 1063 1260
1.50 1105 1310
1.60 1152 1368
1.70 1208 1436
1.80 1281 1523
1.90 1354 1611
2.00 1434 1704
2.10 1509 1792
2.20 1584 1871
2.30 1638 1932
2.40 1688 1984
2.50 1741 2047
2.60 1880 2222
2.70 2351 2772
2.80 2453 2892
2.90 2501 2946
3.00 2552 3007
3.10 2616 3078
3.20 2672 3143
3.30 2730 3208
3.40 2789 3271
3.50 2847 3333
3.60 2903 3395
3.70 2956 3464
3.80 3084 3620
3.90 3240 3799
4.00 3350 3920
4.10 3415 3990
4.20 3465 4046
4.30 3516 4103
4.40 3563 4151
4.50 3599 4196
4.60 3644 4249
4.70 3690 4304
4.80 3746 4371
4.90 3802 4441
5.00 3856 4498
5.10 3895 4545
5.20 3929 4585
5.30 3961 4618
5.40 3984 4642
5.50 4007 4671
5.60 4031 4697
5.70 4054 4722
5.80 4075 4750
5.90 4095 4773
6.00 4115 4795
6.10 4136 4821
6.20 4155 4841
6.30 4168 4854
6.40 4181 4872
6.50 4194 4885
6.60 4207 4898
6.70 4220 4911
6.80 4231 4927
6.90 4239 4935
7.00 4248 4945
7.10 4257 4954
7.20 4265 4963
7.30 4274 4972
7.40 4283 4982
7.50 4292 4996
7.60 4300 5004
7.70 4309 5015
7.80 4318 5024
7.90 4329 5044
8.00 4341 5059
8.10 4352 5077
8.20 4364 5090
8.30 4377 5108
8.40 4396 5135
8.50 4423 5174
8.60 4453 5207
8.70 4492 5256
8.80 4549 5327
8.90 4658 5465
9.00 4979 5847
9.10 5283 6181
9.20 5392 6300
9.30 5431 6345
9.40 5447 6363
9.50 5460 6376
9.60 5473 6389
9.70 5485 6405
9.80 5498 6418
9.90 5511 6431
10.00 5524 6445
10.10 5537 6458
10.20 5549 6475
10.30 5562 6489
10.40 5575 6502
10.50 5588 6516
10.60 5601 6534
10.70 5613 6547
10.80 5626 6562
10.90 5639 6575
11.00 5652 6590
11.10 5664 6608
11.20 5677 6621
11.30 5690 6638
11.40 5708 6656
11.50 5725 6674
11.60 5742 6696
11.70 5759 6714
11.80 5777 6733
11.90 5794 6755
12.00 5811 6773
12.10 5829 6791
12.20 5846 6809
12.30 5863 6832
12.40 5880 6851
12.50 5898 6871
12.60 5915 6894
12.70 5934 6915
12.80 5958 6940
12.90 5981 6969
13.00 6004 6994
13.10 6031 7026
13.20 6063 7065
13.30 6095 7100
13.40 6129 7145
13.50 6172 7196
13.60 6218 7252
13.70 6272 7316
13.80 6345 7398
13.90 6417 7485
14.00 6498 7583
14.10 6573 7669
14.20 6648 7748
14.30 6704 7810
14.40 6754 7867
14.50 6806 7929
14.60 6933 8086
14.70 7392 8627
14.80 7505 8764
14.90 7557 8822
15.00 7606 8884
15.10 7667 8954
15.20 7727 9021
15.30 7788 9088
15.40 7849 9153
15.50 7910 9218
15.60 7968 9281
15.70 8020 9346
15.80 8144 9498
15.90 8284 9667
16.00 8401 9791
16.10 8469 9868
16.20 8525 9928
16.30 8581 9988
16.40 8629 10037
16.50 8666 10082
16.60 8711 10136
16.70 8761 10188
16.80 8819 10257
16.90 8879 10326
17.00 8937 10391
17.10 8976 10441
17.20 9012 10480
17.30 9045 10518
17.40 9069 10542
17.50 9092 10572
17.60 9115 10597
17.70 9139 10623
17.80 9160 10651
17.90 9180 10674
18.00 9200 10696
18.10 9221 10722
18.20 9240 10742
18.30 9251 10758
18.40 9262 10769
18.50 9273 10785
18.60 9284 10796
18.70 9295 10807
18.80 9306 10818
18.90 9316 10828
19.00 9327 10839
19.10 9338 10854
19.20 9349 10865
19.30 9360 10876
19.40 9371 10887
19.50 9382 10898
19.60 9393 10913
19.70 9404 10924
19.80 9415 10935
19.90 9426 10946
20.00 9437 10959
Time course of concentrations written to file ./CaOscillate_Func.cdat.
Time course of groups written to file ./CaOscillate_Func.gdat.
Propagation took 2.00e-02 CPU seconds
Program times: 0.02 CPU s 0.00 clock s
Updating species concentrations from ./CaOscillate_Func.cdat
CPU TIME: simulate 0.02 s.
Finished processing file CaOscillate_Func.bngl.
CPU TIME: total 0.05 s.
BioNetGen version 2.8.4
Reading from file CaOscillate_Sat.bngl (level 0)
Read 17 parameters.
Read 4 molecule types.
Read 4 species.
Read 4 observable(s).
Read 8 reaction rule(s).
ACTION: generate_network( CaOscillate_Sat )
Iteration 0: 4 species 0 rxns 0.00e+00 CPU s
Iteration 1: 4 species 8 rxns 1.00e-02 CPU s
Cumulative CPU time for each rule
Rule 1: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule 2: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule 3: 1 reactions 1.00e-02 CPU s 1.00e-02 CPU s/rxn
Rule 4: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule 5: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule 6: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule 7: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule 8: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Total : 8 reactions 1.00e-02 CPU s 1.25e-03 CPU s/rxn
Wrote network in net format to ./CaOscillate_Sat.net.
CPU TIME: generate_network 0.01 s.
ACTION: simulate( method=>"cvode" )
Network simulation using cvode
WARNING: writeFile(): Overwriting existing file ./CaOscillate_Sat.net.
Wrote network in net format to ./CaOscillate_Sat.net.
Running run_network on full command: /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/bin/run_network_x86_64-linux -o ./CaOscillate_Sat -p cvode -a 1e-12 -r 1e-12 --cdat 1 --fdat 0 -v -g ./CaOscillate_Sat.net ./CaOscillate_Sat.net 0.1 200
Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Perl2/BNGAction.pm line 548.
[simulation PID is: 15847]
run_network 3.0
Read 17 parameters from ./CaOscillate_Sat.net
Read 4 species from ./CaOscillate_Sat.net
Read 4 group(s) from ./CaOscillate_Sat.net
Read 0 function(s) from ./CaOscillate_Sat.net
Read 8 reaction(s) from ./CaOscillate_Sat.net
8 reaction(s) have nonzero rate
Initialization took 0.00 CPU seconds
Propagating with cvode using dense LU
time n_steps n_deriv_calls
0.00 0 0
0.10 719 851
0.20 753 889
0.30 788 924
0.40 819 960
0.50 842 984
0.60 865 1008
0.70 888 1036
0.80 911 1060
0.90 934 1091
1.00 957 1116
1.10 983 1146
1.20 1014 1184
1.30 1046 1218
1.40 1079 1259
1.50 1122 1310
1.60 1169 1362
1.70 1226 1428
1.80 1296 1512
1.90 1370 1605
2.00 1450 1698
2.10 1526 1787
2.20 1601 1866
2.30 1655 1927
2.40 1705 1979
2.50 1759 2043
2.60 1897 2217
2.70 2371 2794
2.80 2470 2900
2.90 2528 2962
3.00 2575 3020
3.10 2628 3083
3.20 2680 3143
3.30 2732 3204
3.40 2784 3261
3.50 2836 3315
3.60 2888 3373
3.70 2941 3438
3.80 3067 3595
3.90 3224 3777
4.00 3337 3901
4.10 3402 3971
4.20 3456 4029
4.30 3510 4087
4.40 3558 4140
4.50 3594 4180
4.60 3640 4236
4.70 3688 4292
4.80 3746 4359
4.90 3805 4430
5.00 3862 4493
5.10 3903 4540
5.20 3941 4580
5.30 3975 4619
5.40 4000 4645
5.50 4025 4675
5.60 4051 4705
5.70 4076 4735
5.80 4099 4760
5.90 4119 4782
6.00 4140 4808
6.10 4162 4831
6.20 4181 4855
6.30 4192 4871
6.40 4204 4883
6.50 4216 4896
6.60 4228 4908
6.70 4240 4920
6.80 4252 4936
6.90 4264 4948
7.00 4276 4960
7.10 4288 4972
7.20 4299 4983
7.30 4311 4999
7.40 4323 5011
7.50 4335 5023
7.60 4347 5035
7.70 4359 5047
7.80 4371 5063
7.90 4383 5075
8.00 4395 5087
8.10 4407 5099
8.20 4419 5113
8.30 4434 5143
8.40 4450 5161
8.50 4471 5189
8.60 4498 5230
8.70 4533 5272
8.80 4592 5345
8.90 4696 5473
9.00 5025 5862
9.10 5314 6183
9.20 5422 6298
9.30 5462 6344
9.40 5475 6364
9.50 5485 6378
9.60 5494 6387
9.70 5503 6402
9.80 5513 6412
9.90 5522 6423
10.00 5532 6433
10.10 5541 6444
10.20 5551 6454
10.30 5562 6471
10.40 5575 6485
10.50 5588 6498
10.60 5600 6511
10.70 5613 6525
10.80 5626 6544
10.90 5638 6558
11.00 5651 6571
11.10 5664 6586
11.20 5677 6605
11.30 5691 6621
11.40 5708 6639
11.50 5725 6661
11.60 5742 6678
11.70 5760 6697
11.80 5777 6715
11.90 5794 6737
12.00 5811 6755
12.10 5828 6773
12.20 5845 6795
12.30 5862 6813
12.40 5880 6833
12.50 5897 6852
12.60 5914 6875
12.70 5934 6897
12.80 5957 6921
12.90 5980 6950
13.00 6003 6975
13.10 6031 7008
13.20 6063 7047
13.30 6094 7086
13.40 6128 7126
13.50 6171 7177
13.60 6218 7234
13.70 6273 7301
13.80 6345 7381
13.90 6417 7472
14.00 6501 7568
14.10 6578 7655
14.20 6655 7740
14.30 6708 7800
14.40 6759 7858
14.50 6813 7917
14.60 6940 8079
14.70 7388 8611
14.80 7506 8741
14.90 7559 8800
15.00 7608 8861
15.10 7668 8930
15.20 7728 8997
15.30 7788 9063
15.40 7848 9127
15.50 7908 9191
15.60 7965 9253
15.70 8017 9318
15.80 8141 9471
15.90 8281 9636
16.00 8398 9764
16.10 8466 9837
16.20 8522 9897
16.30 8578 9957
16.40 8626 10010
16.50 8664 10052
16.60 8708 10105
16.70 8758 10161
16.80 8816 10230
16.90 8876 10295
17.00 8934 10360
17.10 8976 10408
17.20 9014 10452
17.30 9048 10487
17.40 9073 10516
17.50 9099 10543
17.60 9124 10576
17.70 9149 10602
17.80 9172 10627
17.90 9192 10653
18.00 9213 10675
18.10 9234 10697
18.20 9253 10721
18.30 9265 10738
18.40 9275 10748
18.50 9285 10759
18.60 9295 10769
18.70 9305 10783
18.80 9315 10793
18.90 9325 10803
19.00 9335 10813
19.10 9345 10823
19.20 9354 10832
19.30 9364 10846
19.40 9374 10856
19.50 9384 10868
19.60 9394 10878
19.70 9404 10889
19.80 9414 10901
19.90 9424 10919
20.00 9434 10929
Time course of concentrations written to file ./CaOscillate_Sat.cdat.
Time course of groups written to file ./CaOscillate_Sat.gdat.
Propagation took 1.00e-02 CPU seconds
Program times: 0.01 CPU s 0.00 clock s
Updating species concentrations from ./CaOscillate_Sat.cdat
CPU TIME: simulate 0.03 s.
Finished processing file CaOscillate_Sat.bngl.
CPU TIME: total 0.07 s.
BioNetGen version 2.8.4
Reading from file catalysis.bngl (level 0)
CPU TIME: version 0.00 s.
Warning: Parameter Gf_S_kinase is set to a negative value: -41.5
Warning: Parameter Gf_S_pptase is set to a negative value: -41.5
Warning: Parameter Ea0_S_kinase is set to a negative value: -7.7
Warning: Parameter Ea0_S_pptase is set to a negative value: -7.7
Warning: Parameter Ea0_cat_kinase is set to a negative value: -11.9
Read 17 parameters.
Read 1 compartments.
Read 5 molecule types.
Read 5 species.
Read 4 reaction rule(s).
Read 4 energy patterns(s).
Read 6 observable(s).
ACTION: generate_network( catalysis )
Iteration 0: 5 species 0 rxns 0.00e+00 CPU s
Iteration 1: 7 species 2 rxns 1.00e-02 CPU s
Iteration 2: 9 species 6 rxns 1.00e-02 CPU s
Iteration 3: 10 species 10 rxns 1.00e-02 CPU s
Iteration 4: 10 species 12 rxns 0.00e+00 CPU s
Cumulative CPU time for each rule
Rule 1: 4 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule 2: 4 reactions 1.00e-02 CPU s 2.50e-03 CPU s/rxn
Rule 3: 2 reactions 1.00e-02 CPU s 5.00e-03 CPU s/rxn
Rule 4: 2 reactions 1.00e-02 CPU s 5.00e-03 CPU s/rxn
Total : 12 reactions 3.00e-02 CPU s 2.50e-03 CPU s/rxn
Wrote network in net format to ./catalysis.net.
CPU TIME: generate_network 0.03 s.
ACTION: simulate( method=>"cvode" )
Network simulation using cvode
WARNING: writeFile(): Overwriting existing file ./catalysis.net.
Wrote network in net format to ./catalysis.net.
Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Perl2/BNGAction.pm line 548.
Running run_network on full command: /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/bin/run_network_x86_64-linux -o ./catalysis -p cvode -a 0.001 -r 1e-07 --cdat 1 --fdat 0 -g ./catalysis.net ./catalysis.net 30 120
[simulation PID is: 15849]
run_network 3.0
Read 30 parameters from ./catalysis.net
@C::$ATP() is a fixed (boundaryCondition) variable
@C::$ADP() is a fixed (boundaryCondition) variable
Read 10 species from ./catalysis.net
Read 6 group(s) from ./catalysis.net
Read 0 function(s) from ./catalysis.net
Read 12 reaction(s) from ./catalysis.net
12 reaction(s) have nonzero rate
Initialization took 0.00 CPU seconds
Propagating with cvode using dense LU
Time course of concentrations written to file ./catalysis.cdat.
Time course of groups written to file ./catalysis.gdat.
Propagation took 0.00e+00 CPU seconds
Program times: 0.00 CPU s 0.00 clock s
Updating species concentrations from ./catalysis.cdat
CPU TIME: simulate 0.02 s.
Finished processing file catalysis.bngl.
CPU TIME: total 0.08 s.
BioNetGen version 2.8.4
Reading from file egfr_net.bngl (level 0)
Read 48 parameters.
Read 5 molecule types.
Read 6 species.
Read 23 reaction rule(s).
Read 15 observable(s).
ACTION: generate_network( egfr_net )
Iteration 0: 6 species 0 rxns 0.00e+00 CPU s
Iteration 1: 7 species 3 rxns 0.00e+00 CPU s
Iteration 2: 8 species 5 rxns 1.00e-02 CPU s
Iteration 3: 10 species 8 rxns 1.00e-02 CPU s
Iteration 4: 19 species 21 rxns 3.00e-02 CPU s
Iteration 5: 37 species 76 rxns 1.00e-01 CPU s
Iteration 6: 69 species 213 rxns 2.30e-01 CPU s
Iteration 7: 131 species 494 rxns 5.30e-01 CPU s
Iteration 8: 295 species 1260 rxns 1.63e+00 CPU s
Iteration 9: 356 species 3088 rxns 4.20e+00 CPU s
Iteration 10: 356 species 3749 rxns 1.93e+00 CPU s
Cumulative CPU time for each rule
Rule 1: 48 reactions 1.20e-01 CPU s 2.50e-03 CPU s/rxn
Rule 2: 600 reactions 2.13e+00 CPU s 3.55e-03 CPU s/rxn
Rule 3: 144 reactions 2.40e-01 CPU s 1.67e-03 CPU s/rxn
Rule 4: 96 reactions 1.80e-01 CPU s 1.88e-03 CPU s/rxn
Rule 5: 156 reactions 2.30e-01 CPU s 1.47e-03 CPU s/rxn
Rule 6: 104 reactions 1.40e-01 CPU s 1.35e-03 CPU s/rxn
Rule 7: 96 reactions 2.00e-01 CPU s 2.08e-03 CPU s/rxn
Rule 8: 104 reactions 1.60e-01 CPU s 1.54e-03 CPU s/rxn
Rule 9: 312 reactions 6.10e-01 CPU s 1.96e-03 CPU s/rxn
Rule 10: 312 reactions 6.30e-01 CPU s 2.02e-03 CPU s/rxn
Rule 11: 312 reactions 6.40e-01 CPU s 2.05e-03 CPU s/rxn
Rule 12: 208 reactions 3.80e-01 CPU s 1.83e-03 CPU s/rxn
Rule 13: 208 reactions 4.00e-01 CPU s 1.92e-03 CPU s/rxn
Rule 14: 208 reactions 5.00e-01 CPU s 2.40e-03 CPU s/rxn
Rule 15: 208 reactions 5.40e-01 CPU s 2.60e-03 CPU s/rxn
Rule 16: 208 reactions 4.50e-01 CPU s 2.16e-03 CPU s/rxn
Rule 17: 208 reactions 5.00e-01 CPU s 2.40e-03 CPU s/rxn
Rule 18: 208 reactions 4.80e-01 CPU s 2.31e-03 CPU s/rxn
Rule 19: 2 reactions 3.00e-02 CPU s 1.50e-02 CPU s/rxn
Rule 20: 2 reactions 5.00e-02 CPU s 2.50e-02 CPU s/rxn
Rule 21: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule 22: 2 reactions 4.00e-02 CPU s 2.00e-02 CPU s/rxn
Rule 23: 2 reactions 2.00e-02 CPU s 1.00e-02 CPU s/rxn
Total : 3749 reactions 8.67e+00 CPU s 2.31e-03 CPU s/rxn
Wrote network in net format to ./egfr_net.net.
CPU TIME: generate_network 8.81 s.
ACTION: simulate( method=>"cvode" )
Network simulation using cvode
WARNING: writeFile(): Overwriting existing file ./egfr_net.net.
Wrote network in net format to ./egfr_net.net.
Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Perl2/BNGAction.pm line 548.
Running run_network on full command: /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/bin/run_network_x86_64-linux -o ./egfr_net -p cvode -a 1e-08 -r 1e-08 -b --cdat 1 --fdat 0 -g ./egfr_net.net ./egfr_net.net 0.8 50
[simulation PID is: 15851]
run_network 3.0
Read 48 parameters from ./egfr_net.net
Read 356 species from ./egfr_net.net
Read 15 group(s) from ./egfr_net.net
Read 0 function(s) from ./egfr_net.net
Read 3749 reaction(s) from ./egfr_net.net
3749 reaction(s) have nonzero rate
Initialization took 0.02 CPU seconds
Propagating with cvode using GMRES
Time course of concentrations written to file ./egfr_net.cdat.
Time course of groups written to file ./egfr_net.gdat.
Propagation took 1.00e-01 CPU seconds
Program times: 0.12 CPU s 0.00 clock s
Updating species concentrations from ./egfr_net.cdat
CPU TIME: simulate 0.26 s.
Finished processing file egfr_net.bngl.
CPU TIME: total 9.13 s.
BioNetGen version 2.8.4
Reading from file egfr_net_red.bngl (level 0)
Read 48 parameters.
Read 7 molecule types.
Read 7 species.
Read 14 observable(s).
Read 26 reaction rule(s).
ACTION: generate_network( egfr_net_red )
Iteration 0: 7 species 0 rxns 0.00e+00 CPU s
Iteration 1: 11 species 4 rxns 2.00e-02 CPU s
Iteration 2: 13 species 10 rxns 1.00e-02 CPU s
Iteration 3: 15 species 14 rxns 1.00e-02 CPU s
Iteration 4: 20 species 21 rxns 1.00e-02 CPU s
Iteration 5: 26 species 39 rxns 3.00e-02 CPU s
Iteration 6: 33 species 62 rxns 3.00e-02 CPU s
Iteration 7: 38 species 90 rxns 4.00e-02 CPU s
Iteration 8: 40 species 115 rxns 4.00e-02 CPU s
Iteration 9: 40 species 123 rxns 1.00e-02 CPU s
Cumulative CPU time for each rule
Rule 1: 2 reactions 1.00e-02 CPU s 5.00e-03 CPU s/rxn
Rule 2: 8 reactions 1.00e-02 CPU s 1.25e-03 CPU s/rxn
Rule 3: 12 reactions 2.00e-02 CPU s 1.67e-03 CPU s/rxn
Rule 4: 8 reactions 1.00e-02 CPU s 1.25e-03 CPU s/rxn
Rule 5: 12 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule 6: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule 7: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule 8: 3 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule 9: 3 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule 10: 1 reactions 1.00e-02 CPU s 1.00e-02 CPU s/rxn
Rule 11: 3 reactions 1.00e-02 CPU s 3.33e-03 CPU s/rxn
Rule 12: 6 reactions 1.00e-02 CPU s 1.67e-03 CPU s/rxn
Rule 13: 6 reactions 1.00e-02 CPU s 1.67e-03 CPU s/rxn
Rule 14: 6 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule 15: 6 reactions 2.00e-02 CPU s 3.33e-03 CPU s/rxn
Rule 16: 6 reactions 1.00e-02 CPU s 1.67e-03 CPU s/rxn
Rule 17: 6 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule 18: 6 reactions 2.00e-02 CPU s 3.33e-03 CPU s/rxn
Rule 19: 6 reactions 2.00e-02 CPU s 3.33e-03 CPU s/rxn
Rule 20: 6 reactions 1.00e-02 CPU s 1.67e-03 CPU s/rxn
Rule 21: 6 reactions 1.00e-02 CPU s 1.67e-03 CPU s/rxn
Rule 22: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule 23: 2 reactions 1.00e-02 CPU s 5.00e-03 CPU s/rxn
Rule 24: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule 25: 2 reactions 1.00e-02 CPU s 5.00e-03 CPU s/rxn
Rule 26: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Total : 123 reactions 2.00e-01 CPU s 1.63e-03 CPU s/rxn
Wrote network in net format to ./egfr_net_red.net.
CPU TIME: generate_network 0.21 s.
Set concentration of species egf(r) to value 0
CPU TIME: setConcentration 0.00 s.
ACTION: simulate( method=>"cvode" )
Network simulation using cvode
WARNING: writeFile(): Overwriting existing file ./egfr_net_red.net.
Wrote network in net format to ./egfr_net_red.net.
Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Perl2/BNGAction.pm line 548.
Running run_network on full command: /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/bin/run_network_x86_64-linux -o ./egfr_net_red -p cvode -a 1e-08 -r 1e-08 -b -c --cdat 1 --fdat 0 -g ./egfr_net_red.net ./egfr_net_red.net 10000 10
[simulation PID is: 15853]
run_network 3.0
Read 48 parameters from ./egfr_net_red.net
Read 40 species from ./egfr_net_red.net
Read 14 group(s) from ./egfr_net_red.net
Read 3 function(s) from ./egfr_net_red.net
Read 123 reaction(s) from ./egfr_net_red.net
123 reaction(s) have nonzero rate
Initialization took 0.00 CPU seconds
Propagating with cvode using GMRES
Time course of concentrations written to file ./egfr_net_red.cdat.
Time course of groups written to file ./egfr_net_red.gdat.
Propagation took 0.00e+00 CPU seconds
Program times: 0.00 CPU s 0.00 clock s
Simulation reached steady state by t_end=100000
Updating species concentrations from ./egfr_net_red.cdat
CPU TIME: simulate 0.02 s.
Set concentration of species egf(r) to value egf_tot
CPU TIME: setConcentration 0.00 s.
ACTION: simulate( method=>"cvode" )
Network simulation using cvode
WARNING: writeFile(): Overwriting existing file ./egfr_net_red.net.
Wrote network in net format to ./egfr_net_red.net.
Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Perl2/BNGAction.pm line 548.
Running run_network on full command: /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/bin/run_network_x86_64-linux -o ./egfr_net_red -p cvode -a 1e-08 -r 1e-08 -b --cdat 1 --fdat 0 -g ./egfr_net_red.net ./egfr_net_red.net 1 120
[simulation PID is: 15855]
run_network 3.0
Read 48 parameters from ./egfr_net_red.net
Read 40 species from ./egfr_net_red.net
Read 14 group(s) from ./egfr_net_red.net
Read 3 function(s) from ./egfr_net_red.net
Read 123 reaction(s) from ./egfr_net_red.net
123 reaction(s) have nonzero rate
Initialization took 0.00 CPU seconds
Propagating with cvode using GMRES
Time course of concentrations written to file ./egfr_net_red.cdat.
Time course of groups written to file ./egfr_net_red.gdat.
Propagation took 1.00e-02 CPU seconds
Program times: 0.01 CPU s 0.00 clock s
Updating species concentrations from ./egfr_net_red.cdat
CPU TIME: simulate 0.04 s.
Finished processing file egfr_net_red.bngl.
CPU TIME: total 0.34 s.
BioNetGen version 2.8.4
Reading from file egfr_path.bngl (level 0)
Read 48 parameters.
Read 18 species.
Read 19 reaction rule(s).
Read 11 observable(s).
ACTION: generate_network( egfr_path )
Iteration 0: 18 species 0 rxns 0.00e+00 CPU s
Iteration 1: 18 species 37 rxns 3.00e-02 CPU s
Cumulative CPU time for each rule
Rule 1: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule 2: 2 reactions 1.00e-02 CPU s 5.00e-03 CPU s/rxn
Rule 3: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule 4: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule 5: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule 6: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule 7: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule 8: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule 9: 2 reactions 1.00e-02 CPU s 5.00e-03 CPU s/rxn
Rule 10: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule 11: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule 12: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule 13: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule 14: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule 15: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule 16: 2 reactions 1.00e-02 CPU s 5.00e-03 CPU s/rxn
Rule 17: 1 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule 18: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule 19: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Total : 37 reactions 3.00e-02 CPU s 8.11e-04 CPU s/rxn
Wrote network in net format to ./egfr_path.net.
CPU TIME: generate_network 0.04 s.
Set concentration of species EGF() to value 0
CPU TIME: setConcentration 0.01 s.
ACTION: simulate( method=>"cvode" )
Network simulation using cvode
WARNING: writeFile(): Overwriting existing file ./egfr_path.net.
Wrote network in net format to ./egfr_path.net.
Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Perl2/BNGAction.pm line 548.
Running run_network on full command: /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/bin/run_network_x86_64-linux -o ./egfr_path -p cvode -a 1e-08 -r 1e-08 -c --cdat 1 --fdat 0 -g ./egfr_path.net ./egfr_path.net 10000 10
[simulation PID is: 15857]
run_network 3.0
Read 48 parameters from ./egfr_path.net
Read 18 species from ./egfr_path.net
Read 11 group(s) from ./egfr_path.net
Read 0 function(s) from ./egfr_path.net
Read 37 reaction(s) from ./egfr_path.net
37 reaction(s) have nonzero rate
Initialization took 0.00 CPU seconds
Propagating with cvode using dense LU
Time course of concentrations written to file ./egfr_path.cdat.
Time course of groups written to file ./egfr_path.gdat.
Propagation took 0.00e+00 CPU seconds
Program times: 0.00 CPU s 0.00 clock s
Simulation reached steady state by t_end=100000
Updating species concentrations from ./egfr_path.cdat
CPU TIME: simulate 0.02 s.
Set concentration of species EGF() to value EGF_tot
CPU TIME: setConcentration 0.00 s.
ACTION: simulate( method=>"cvode" )
Network simulation using cvode
WARNING: writeFile(): Overwriting existing file ./egfr_path.net.
Wrote network in net format to ./egfr_path.net.
Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Perl2/BNGAction.pm line 548.
Running run_network on full command: /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/bin/run_network_x86_64-linux -o ./egfr_path -p cvode -a 1e-08 -r 1e-08 --cdat 1 --fdat 0 -g ./egfr_path.net ./egfr_path.net 1 120
[simulation PID is: 15859]
run_network 3.0
Read 48 parameters from ./egfr_path.net
Read 18 species from ./egfr_path.net
Read 11 group(s) from ./egfr_path.net
Read 0 function(s) from ./egfr_path.net
Read 37 reaction(s) from ./egfr_path.net
37 reaction(s) have nonzero rate
Initialization took 0.00 CPU seconds
Propagating with cvode using dense LU
Time course of concentrations written to file ./egfr_path.cdat.
Time course of groups written to file ./egfr_path.gdat.
Propagation took 0.00e+00 CPU seconds
Program times: 0.00 CPU s 0.00 clock s
Updating species concentrations from ./egfr_path.cdat
CPU TIME: simulate 0.02 s.
Finished processing file egfr_path.bngl.
CPU TIME: total 0.13 s.
BioNetGen version 2.8.4
Reading from file energy_example1.bngl (level 0)
CPU TIME: version 0.00 s.
Warning: Parameter Gf_SA is set to a negative value: -47.5
Warning: Parameter Gf_SB is set to a negative value: -47.5
Warning: Parameter Gf_SC is set to a negative value: -47.5
Warning: Parameter Gf_SBC is set to a negative value: -5.9
Warning: Parameter Gf_SABC is set to a negative value: -1.8
Warning: Parameter Ea0_SA is set to a negative value: -17.8
Warning: Parameter Ea0_SB is set to a negative value: -17.8
Warning: Parameter Ea0_SC is set to a negative value: -17.8
Read 19 parameters.
Read 1 compartments.
Read 4 molecule types.
Read 4 species.
Read 6 energy patterns(s).
Read 11 observable(s).
Read 3 reaction rule(s).
ACTION: generate_network( energy_example1 )
Iteration 0: 4 species 0 rxns 0.00e+00 CPU s
Iteration 1: 7 species 3 rxns 1.00e-02 CPU s
Iteration 2: 10 species 12 rxns 1.00e-02 CPU s
Iteration 3: 11 species 21 rxns 2.00e-02 CPU s
Iteration 4: 11 species 24 rxns 1.00e-02 CPU s
Cumulative CPU time for each rule
Rule 1: 8 reactions 1.00e-02 CPU s 1.25e-03 CPU s/rxn
Rule 2: 8 reactions 2.00e-02 CPU s 2.50e-03 CPU s/rxn
Rule 3: 8 reactions 2.00e-02 CPU s 2.50e-03 CPU s/rxn
Total : 24 reactions 5.00e-02 CPU s 2.08e-03 CPU s/rxn
Wrote network in net format to ./energy_example1.net.
CPU TIME: generate_network 0.05 s.
Wrote SBML to ./energy_example1_sbml.xml.
CPU TIME: writeSBML 0.00 s.
Finished processing file energy_example1.bngl.
CPU TIME: total 0.08 s.
BioNetGen version 2.8.4
Reading from file fceri_ji.bngl (level 0)
Read 26 parameters.
Read 4 species.
Adding pY as allowed state of component b of molecule Rec
Adding pY as allowed state of component g of molecule Rec
Adding pY as allowed state of component l of molecule Syk
Adding pY as allowed state of component a of molecule Syk
Read 19 reaction rule(s).
Read 10 observable(s).
ACTION: generate_network( fceri_ji )
Iteration 0: 4 species 0 rxns 0.00e+00 CPU s
Iteration 1: 6 species 2 rxns 1.00e-02 CPU s
Iteration 2: 9 species 8 rxns 1.00e-02 CPU s
Iteration 3: 12 species 20 rxns 2.00e-02 CPU s
Iteration 4: 22 species 36 rxns 3.00e-02 CPU s
Iteration 5: 43 species 100 rxns 8.00e-02 CPU s
Iteration 6: 78 species 255 rxns 2.10e-01 CPU s
Iteration 7: 139 species 586 rxns 4.50e-01 CPU s
Iteration 8: 199 species 1190 rxns 9.10e-01 CPU s
Iteration 9: 303 species 1841 rxns 1.12e+00 CPU s
Iteration 10: 354 species 3143 rxns 1.95e+00 CPU s
Iteration 11: 354 species 3680 rxns 8.50e-01 CPU s
Cumulative CPU time for each rule
Rule 1: 48 reactions 1.50e-01 CPU s 3.13e-03 CPU s/rxn
Rule 2: 1152 reactions 1.57e+00 CPU s 1.36e-03 CPU s/rxn
Rule 3: 312 reactions 4.80e-01 CPU s 1.54e-03 CPU s/rxn
Rule 4: 36 reactions 8.00e-02 CPU s 2.22e-03 CPU s/rxn
Rule 5: 24 reactions 9.00e-02 CPU s 3.75e-03 CPU s/rxn
Rule 6: 312 reactions 4.60e-01 CPU s 1.47e-03 CPU s/rxn
Rule 7: 36 reactions 8.00e-02 CPU s 2.22e-03 CPU s/rxn
Rule 8: 24 reactions 1.10e-01 CPU s 4.58e-03 CPU s/rxn
Rule 9: 832 reactions 1.19e+00 CPU s 1.43e-03 CPU s/rxn
Rule 10: 48 reactions 1.00e-01 CPU s 2.08e-03 CPU s/rxn
Rule 11: 48 reactions 1.20e-01 CPU s 2.50e-03 CPU s/rxn
Rule 12: 64 reactions 1.90e-01 CPU s 2.97e-03 CPU s/rxn
Rule 13: 64 reactions 1.40e-01 CPU s 2.19e-03 CPU s/rxn
Rule 14: 156 reactions 1.90e-01 CPU s 1.22e-03 CPU s/rxn
Rule 15: 104 reactions 1.30e-01 CPU s 1.25e-03 CPU s/rxn
Rule 16: 208 reactions 2.80e-01 CPU s 1.35e-03 CPU s/rxn
Rule 17: 208 reactions 2.50e-01 CPU s 1.20e-03 CPU s/rxn
Rule 18: 2 reactions 1.00e-02 CPU s 5.00e-03 CPU s/rxn
Rule 19: 2 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Total : 3680 reactions 5.62e+00 CPU s 1.53e-03 CPU s/rxn
Wrote network in net format to ./fceri_ji.net.
CPU TIME: generate_network 5.77 s.
ACTION: simulate( method=>"cvode" )
Network simulation using cvode
WARNING: writeFile(): Overwriting existing file ./fceri_ji.net.
Wrote network in net format to ./fceri_ji.net.
Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Perl2/BNGAction.pm line 548.
Running run_network on full command: /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/bin/run_network_x86_64-linux -o ./fceri_ji -p cvode -a 1e-08 -r 1e-08 --cdat 1 --fdat 0 -g ./fceri_ji.net ./fceri_ji.net 60 10
[simulation PID is: 15861]
run_network 3.0
Read 26 parameters from ./fceri_ji.net
Read 354 species from ./fceri_ji.net
Read 10 group(s) from ./fceri_ji.net
Read 0 function(s) from ./fceri_ji.net
Read 3680 reaction(s) from ./fceri_ji.net
Removed 600 reactions with zero rate
3080 reaction(s) have nonzero rate
Initialization took 0.02 CPU seconds
Propagating with cvode using dense LU
Time course of concentrations written to file ./fceri_ji.cdat.
Time course of groups written to file ./fceri_ji.gdat.
Propagation took 8.50e-01 CPU seconds
Program times: 0.87 CPU s 1.00 clock s
Updating species concentrations from ./fceri_ji.cdat
CPU TIME: simulate 1.01 s.
Finished processing file fceri_ji.bngl.
CPU TIME: total 6.83 s.
BioNetGen version 2.8.4
Reading from file test_continue.bngl (level 0)
Read 19 parameters.
Read 5 molecule types.
Read 4 species.
Read 6 observable(s).
Read 6 reaction rule(s).
ACTION: generate_network( test_continue )
Iteration 0: 4 species 0 rxns 0.00e+00 CPU s
Iteration 1: 6 species 2 rxns 0.00e+00 CPU s
Iteration 2: 7 species 5 rxns 1.00e-02 CPU s
Iteration 3: 8 species 7 rxns 0.00e+00 CPU s
Iteration 4: 12 species 12 rxns 1.00e-02 CPU s
Iteration 5: 17 species 30 rxns 3.00e-02 CPU s
Iteration 6: 22 species 59 rxns 4.00e-02 CPU s
Iteration 7: 22 species 76 rxns 4.00e-02 CPU s
Cumulative CPU time for each rule
Rule 1: 8 reactions 0.00e+00 CPU s 0.00e+00 CPU s/rxn
Rule 2: 20 reactions 5.00e-02 CPU s 2.50e-03 CPU s/rxn
Rule 3: 4 reactions 2.00e-02 CPU s 5.00e-03 CPU s/rxn
Rule 4: 6 reactions 1.00e-02 CPU s 1.67e-03 CPU s/rxn
Rule 5: 24 reactions 3.00e-02 CPU s 1.25e-03 CPU s/rxn
Rule 6: 14 reactions 2.00e-02 CPU s 1.43e-03 CPU s/rxn
Total : 76 reactions 1.30e-01 CPU s 1.71e-03 CPU s/rxn
Wrote network in net format to ./test_continue.net.
CPU TIME: generate_network 0.13 s.
Set concentration of species EGF(R) to value EGF_init
CPU TIME: setConcentration 0.00 s.
ACTION: simulate( method=>"cvode" )
Network simulation using cvode
WARNING: writeFile(): Overwriting existing file ./test_continue.net.
Wrote network in net format to ./test_continue.net.
Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Perl2/BNGAction.pm line 548.
Running run_network on full command: /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/bin/run_network_x86_64-linux -o ./test_continue -p cvode -a 1e-08 -r 1e-08 --cdat 1 --fdat 0 -g ./test_continue.net ./test_continue.net 2.5 40
[simulation PID is: 15863]
run_network 3.0
Read 19 parameters from ./test_continue.net
Read 22 species from ./test_continue.net
Read 6 group(s) from ./test_continue.net
Read 0 function(s) from ./test_continue.net
Read 76 reaction(s) from ./test_continue.net
76 reaction(s) have nonzero rate
Initialization took 0.00 CPU seconds
Propagating with cvode using dense LU
Time course of concentrations written to file ./test_continue.cdat.
Time course of groups written to file ./test_continue.gdat.
Propagation took 0.00e+00 CPU seconds
Program times: 0.00 CPU s 0.00 clock s
Updating species concentrations from ./test_continue.cdat
CPU TIME: simulate 0.02 s.
Set concentration of species EGF(R) to value 10*EGF_init
CPU TIME: setConcentration 0.00 s.
ACTION: simulate( method=>"cvode" )
Network simulation using cvode
WARNING: writeFile(): Overwriting existing file ./test_continue.net.
Wrote network in net format to ./test_continue.net.
Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Perl2/BNGAction.pm line 548.
Running run_network on full command: /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/bin/run_network_x86_64-linux -o ./test_continue -p cvode -a 1e-08 -r 1e-08 --cdat 1 --fdat 0 -x -i 1.000000000000e+02 -g ./test_continue.net ./test_continue.net 2.5 40
[simulation PID is: 15865]
run_network 3.0
Read 20 parameters from ./test_continue.net
Read 22 species from ./test_continue.net
Read 6 group(s) from ./test_continue.net
Read 0 function(s) from ./test_continue.net
Read 76 reaction(s) from ./test_continue.net
76 reaction(s) have nonzero rate
Initialization took 0.00 CPU seconds
Propagating with cvode using dense LU
Time course of concentrations written to file ./test_continue.cdat.
Time course of groups written to file ./test_continue.gdat.
Propagation took 0.00e+00 CPU seconds
Program times: 0.00 CPU s 0.00 clock s
Updating species concentrations from ./test_continue.cdat
CPU TIME: simulate 0.03 s.
Set concentration of species EGF(R) to value 0.1*EGF_init
CPU TIME: setConcentration 0.00 s.
ACTION: simulate( method=>"cvode" )
Network simulation using cvode
WARNING: writeFile(): Overwriting existing file ./test_continue.net.
Wrote network in net format to ./test_continue.net.
Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Perl2/BNGAction.pm line 548.
Running run_network on full command: /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/bin/run_network_x86_64-linux -o ./test_continue -p cvode -a 1e-08 -r 1e-08 --cdat 1 --fdat 0 -x -i 2.000000000000e+02 -g ./test_continue.net ./test_continue.net 2.5 40
[simulation PID is: 15867]
run_network 3.0
Read 21 parameters from ./test_continue.net
Read 22 species from ./test_continue.net
Read 6 group(s) from ./test_continue.net
Read 0 function(s) from ./test_continue.net
Read 76 reaction(s) from ./test_continue.net
76 reaction(s) have nonzero rate
Initialization took 0.00 CPU seconds
Propagating with cvode using dense LU
Time course of concentrations written to file ./test_continue.cdat.
Time course of groups written to file ./test_continue.gdat.
Propagation took 0.00e+00 CPU seconds
Program times: 0.00 CPU s 0.00 clock s
Updating species concentrations from ./test_continue.cdat
CPU TIME: simulate 0.03 s.
Reset species concentrations to "DEFAULT" saved values.
CPU TIME: resetConcentrations 0.00 s.
Set concentration of species EGF(R) to value EGF_init
CPU TIME: setConcentration 0.00 s.
ACTION: simulate( method=>"ssa" )
Network simulation using ssa
Wrote network in net format to ./test_continue_ssa.net.
Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Perl2/BNGAction.pm line 548.
Running run_network on full command: /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/bin/run_network_x86_64-linux -o ./test_continue_ssa -p ssa -h 1787015723 --cdat 1 --fdat 0 -g ./test_continue_ssa.net ./test_continue_ssa.net 2.5 40
[simulation PID is: 15869]
run_network 3.0
Read 21 parameters from ./test_continue_ssa.net
Read 22 species from ./test_continue_ssa.net
Read 6 group(s) from ./test_continue_ssa.net
Read 0 function(s) from ./test_continue_ssa.net
Read 76 reaction(s) from ./test_continue_ssa.net
76 reaction(s) have nonzero rate
rxn_rate_update_interval=1
Average number of update rxns is 14.17
Initialization took 0.00 CPU seconds
Stochastic simulation using direct Gillespie algorithm
TOTAL STEPS: 71037
Time course of concentrations written to file ./test_continue_ssa.cdat.
Time course of groups written to file ./test_continue_ssa.gdat.
Propagation took 2.00e-02 CPU seconds
Program times: 0.02 CPU s 0.00 clock s
Updating species concentrations from ./test_continue_ssa.cdat
CPU TIME: simulate 0.03 s.
Set concentration of species EGF(R) to value 10*EGF_init
CPU TIME: setConcentration 0.00 s.
ACTION: simulate( method=>"ssa" )
Network simulation using ssa
WARNING: writeFile(): Overwriting existing file ./test_continue_ssa.net.
Wrote network in net format to ./test_continue_ssa.net.
Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Perl2/BNGAction.pm line 548.
Running run_network on full command: /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/bin/run_network_x86_64-linux -o ./test_continue_ssa -p ssa -h 102066172 --cdat 1 --fdat 0 -x -i 1.000000000000e+02 -g ./test_continue_ssa.net ./test_continue_ssa.net 2.5 40
[simulation PID is: 15871]
run_network 3.0
Read 22 parameters from ./test_continue_ssa.net
Read 22 species from ./test_continue_ssa.net
Read 6 group(s) from ./test_continue_ssa.net
Read 0 function(s) from ./test_continue_ssa.net
Read 76 reaction(s) from ./test_continue_ssa.net
76 reaction(s) have nonzero rate
rxn_rate_update_interval=1
Average number of update rxns is 14.17
Initialization took 0.00 CPU seconds
Stochastic simulation using direct Gillespie algorithm
TOTAL STEPS: 129608
Time course of concentrations written to file ./test_continue_ssa.cdat.
Time course of groups written to file ./test_continue_ssa.gdat.
Propagation took 3.00e-02 CPU seconds
Program times: 0.03 CPU s 0.00 clock s
Updating species concentrations from ./test_continue_ssa.cdat
CPU TIME: simulate 0.05 s.
Set concentration of species EGF(R) to value 0.1*EGF_init
CPU TIME: setConcentration 0.00 s.
ACTION: simulate( method=>"ssa" )
Network simulation using ssa
WARNING: writeFile(): Overwriting existing file ./test_continue_ssa.net.
Wrote network in net format to ./test_continue_ssa.net.
Can't exec "hostname": No such file or directory at /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/Perl2/BNGAction.pm line 548.
Running run_network on full command: /builddir/build/BUILD/bionetgen-2.8.4/bionetgen-BioNetGen-2.8.4/bng2/bin/run_network_x86_64-linux -o ./test_continue_ssa -p ssa -h 1046033162 --cdat 1 --fdat 0 -x -i 2.000000000000e+02 -g ./test_continue_ssa.net ./test_continue_ssa.net 2.5 40
[simulation PID is: 15873]
run_network 3.0
Read 23 parameters from ./test_continue_ssa.net
Read 22 species from ./test_continue_ssa.net
Read 6 group(s) from ./test_continue_ssa.net
Read 0 function(s) from ./test_continue_ssa.net
Read 76 reaction(s) from ./test_continue_ssa.net
76 reaction(s) have nonzero rate
rxn_rate_update_interval=1
Average number of update rxns is 14.17
Initialization took 0.00 CPU seconds
Stochastic simulation using direct Gillespie algorithm
TOTAL STEPS: 107536
Time course of concentrations written to file ./test_continue_ssa.cdat.
Time course of groups written to file ./test_continue_ssa.gdat.
Propagation took 2.00e-02 CPU seconds
Program times: 0.02 CPU s 0.00 clock s
Updating species concentrations from ./test_continue_ssa.cdat
CPU TIME: simulate 0.05 s.
Finished processing file test_continue.bngl.
CPU TIME: total 0.37 s.
Tests finished.
+ echo 'Tests finished.'
+ RPM_EC=0
++ jobs -p
+ exit 0
Processing files: bionetgen-2.8.4-1.fc37.x86_64
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.phX56z
+ umask 022
+ cd /builddir/build/BUILD
+ cd bionetgen-2.8.4
+ DOCDIR=/builddir/build/BUILDROOT/bionetgen-2.8.4-1.fc37.x86_64/usr/share/doc/bionetgen
+ export LC_ALL=C
+ LC_ALL=C
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/bionetgen-2.8.4-1.fc37.x86_64/usr/share/doc/bionetgen
+ cp -pr bionetgen-BioNetGen-2.8.4/README.md /builddir/build/BUILDROOT/bionetgen-2.8.4-1.fc37.x86_64/usr/share/doc/bionetgen
+ cp -pr bionetgen-BioNetGen-2.8.4/bng2/CREDITS.txt /builddir/build/BUILDROOT/bionetgen-2.8.4-1.fc37.x86_64/usr/share/doc/bionetgen
+ cp -pr bionetgen-BioNetGen-2.8.4/bng2/CHANGES.txt /builddir/build/BUILDROOT/bionetgen-2.8.4-1.fc37.x86_64/usr/share/doc/bionetgen
+ cp -pr bionetgen-BioNetGen-2.8.4/bng2/VERSION /builddir/build/BUILDROOT/bionetgen-2.8.4-1.fc37.x86_64/usr/share/doc/bionetgen
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.hyLHes
+ umask 022
+ cd /builddir/build/BUILD
+ cd bionetgen-2.8.4
+ LICENSEDIR=/builddir/build/BUILDROOT/bionetgen-2.8.4-1.fc37.x86_64/usr/share/licenses/bionetgen
+ export LC_ALL=C
+ LC_ALL=C
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/bionetgen-2.8.4-1.fc37.x86_64/usr/share/licenses/bionetgen
+ cp -pr bionetgen-BioNetGen-2.8.4/LICENSE /builddir/build/BUILDROOT/bionetgen-2.8.4-1.fc37.x86_64/usr/share/licenses/bionetgen
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: bionetgen = 2.8.4-1.fc37 bionetgen(x86-64) = 2.8.4-1.fc37
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_2.7)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libmuparser.so.2()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) rtld(GNU_HASH)
Processing files: bionetgen-perl-2.8.4-1.fc37.noarch
Provides: bionetgen-perl = 2.8.4-1.fc37 bundled(XML-TreePP) = 0.41 perl(Viz)
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: /usr/bin/perl perl(Carp) perl(Class::Struct) perl(Config) perl(Cwd) perl(Data::Dumper) perl(Exporter) perl(File::Basename) perl(File::Path) perl(File::Spec) perl(File::Spec::Win32) perl(FindBin) perl(Getopt::Long) perl(IO::Handle) perl(IO::Select) perl(IPC::Open3) perl(List::Util) perl(Math::Trig) perl(POSIX) perl(Scalar::Util) perl(Storable) perl(Symbol) perl(constant) perl(lib) perl(strict) perl(vars) perl(warnings)
Processing files: bionetgen-debugsource-2.8.4-1.fc37.x86_64
Provides: bionetgen-debugsource = 2.8.4-1.fc37 bionetgen-debugsource(x86-64) = 2.8.4-1.fc37
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: bionetgen-debuginfo-2.8.4-1.fc37.x86_64
Provides: bionetgen-debuginfo = 2.8.4-1.fc37 bionetgen-debuginfo(x86-64) = 2.8.4-1.fc37 debuginfo(build-id) = 9a5da9d2bc20767f5a0aa1e0259f67258ad67508
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: bionetgen-debugsource(x86-64) = 2.8.4-1.fc37
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/bionetgen-2.8.4-1.fc37.x86_64
Wrote: /builddir/build/RPMS/bionetgen-perl-2.8.4-1.fc37.noarch.rpm
Wrote: /builddir/build/RPMS/bionetgen-debugsource-2.8.4-1.fc37.x86_64.rpm
Wrote: /builddir/build/RPMS/bionetgen-debuginfo-2.8.4-1.fc37.x86_64.rpm
Wrote: /builddir/build/RPMS/bionetgen-2.8.4-1.fc37.x86_64.rpm
Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.zNNcP7
+ umask 022
+ cd /builddir/build/BUILD
+ cd bionetgen-2.8.4
+ /usr/bin/rm -rf /builddir/build/BUILDROOT/bionetgen-2.8.4-1.fc37.x86_64
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.qMfyWh
+ umask 022
+ cd /builddir/build/BUILD
+ rm -rf bionetgen-2.8.4 bionetgen-2.8.4.gemspec
+ RPM_EC=0
++ jobs -p
+ exit 0
Finish: rpmbuild bionetgen-2.8.4-1.fc37.src.rpm
Finish: build phase for bionetgen-2.8.4-1.fc37.src.rpm
INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-x86_64-1660140575.154331/root/var/log/dnf.rpm.log
/var/lib/mock/fedora-rawhide-x86_64-1660140575.154331/root/var/log/dnf.librepo.log
/var/lib/mock/fedora-rawhide-x86_64-1660140575.154331/root/var/log/dnf.log
INFO: Done(/var/lib/copr-rpmbuild/results/bionetgen-2.8.4-1.fc37.src.rpm) Config(child) 2 minutes 39 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
Finish: run
Running RPMResults tool