Mock Version: 3.1
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs  --target x86_64 --nodeps /builddir/build/SPECS/libsonata.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1662036932.534027/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x7f4d62937250>timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.ca8s6c02:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=FalseprintOutput=True)
Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.ca8s6c02:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']
Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '92f845fcfad14233be30316c28b437c2', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1662036932.534027/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.ca8s6c02:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;<mock-chroot>\\007"', '--setenv=PS1=<mock-chroot> \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bs  --target x86_64 --nodeps /builddir/build/SPECS/libsonata.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1658361600
Wrote: /builddir/build/SRPMS/libsonata-0.1.11-8.fc38.src.rpm
Child return code was: 0
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/libsonata.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1662036932.534027/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x7f4d62937250>timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.ca8s6c02:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=FalseprintOutput=True)
Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.ca8s6c02:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']
Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '21865fe524584cd8a961eed62cd400b6', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1662036932.534027/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.ca8s6c02:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;<mock-chroot>\\007"', '--setenv=PS1=<mock-chroot> \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/libsonata.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1658361600
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.zfofsy
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf libsonata-0.1.11
+ /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/libsonata-0.1.11.tar.gz
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd libsonata-0.1.11
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ /usr/bin/git init -q
+ /usr/bin/git config user.name rpm-build
+ /usr/bin/git config user.email '<rpm-build>'
+ /usr/bin/git config gc.auto 0
+ /usr/bin/git add --force .
+ /usr/bin/git commit -q --allow-empty -a --author 'rpm-build <rpm-build>' -m 'libsonata-0.1.11 base'
+ /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0001-include-catch-cmake.patch
+ /usr/bin/git apply --index --reject -
Checking patch tests/CMakeLists.txt...
Applied patch tests/CMakeLists.txt cleanly.
+ /usr/bin/git commit -q -m 0001-include-catch-cmake.patch --author 'rpm-build <rpm-build>'
+ /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0002-use-cpp-17-filesystem.patch
+ /usr/bin/git apply --index --reject -
Checking patch CMakeLists.txt...
Checking patch src/config.cpp...
Applied patch CMakeLists.txt cleanly.
Applied patch src/config.cpp cleanly.
+ /usr/bin/git commit -q -m 0002-use-cpp-17-filesystem.patch --author 'rpm-build <rpm-build>'
+ /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0003-Remove-pybind-redeclarations.patch
+ /usr/bin/git apply --index --reject -
Checking patch python/bindings.cpp...
Applied patch python/bindings.cpp cleanly.
+ /usr/bin/git commit -q -m 0003-Remove-pybind-redeclarations.patch --author 'rpm-build <rpm-build>'
+ /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0004-disable-python-ext-build.patch
+ /usr/bin/git apply --index --reject -
Checking patch setup.py...
Applied patch setup.py cleanly.
+ /usr/bin/git commit -q -m 0004-disable-python-ext-build.patch --author 'rpm-build <rpm-build>'
+ /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0005-set-libdir.patch
+ /usr/bin/git apply --index --reject -
Checking patch CMakeLists.txt...
Applied patch CMakeLists.txt cleanly.
+ /usr/bin/git commit -q -m 0005-set-libdir.patch --author 'rpm-build <rpm-build>'
+ /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0006-fix-assertion-error.patch
+ /usr/bin/git apply --index --reject -
Checking patch CMakeLists.txt...
Checking patch include/bbp/sonata/report_reader.h...
Checking patch src/report_reader.cpp...
Applied patch CMakeLists.txt cleanly.
Applied patch include/bbp/sonata/report_reader.h cleanly.
Applied patch src/report_reader.cpp cleanly.
+ /usr/bin/git commit -q -m 0006-fix-assertion-error.patch --author 'rpm-build <rpm-build>'
+ rm -rf libsonata.egg-info
+ rm -rf extlib/Catch2 extlib/Highfive extlib/fmt extlib/nlohmann
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.wKynVf
+ umask 022
+ cd /builddir/build/BUILD
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules'
+ export FCFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes'
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd libsonata-0.1.11
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules'
+ export FCFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes'
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ /usr/bin/cmake -S . -B redhat-linux-build -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -DSONATA_PYTHON=ON -DEXTLIB_FROM_SUBMODULES=OFF -DSONATA_VERSION=0.1.11 -DSONATA_TESTS=ON -DSONATA_CXX_WARNINGS=OFF
-- The C compiler identification is GNU 12.2.1
-- The CXX compiler identification is GNU 12.2.1
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/gcc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/g++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- HIGHFIVE 2.3.1: (Re)Detecting Highfive dependencies (HIGHFIVE_USE_INSTALL_DEPS=NO)
-- Found HDF5: /usr/lib64/libhdf5.so (found version "1.12.1")  
-- Found Boost: /usr/include (found version "1.78.0") found components: system serialization 
-- Found nlohmann_json: /usr/share/cmake/nlohmann_json/nlohmann_jsonConfig.cmake (found version "3.11.2") 
-- Found PythonInterp: /usr/bin/python3 (found suitable version "3.11", minimum required is "3.6") 
-- Found PythonLibs: /usr/lib64/libpython3.11.so
-- Performing Test HAS_FLTO
-- Performing Test HAS_FLTO - Success
-- Found pybind11: /usr/include (found version "2.10.0")
-- Warning: this does not have an effect - use NO_SYSTEM_FROM_IMPORTED if using imported targets
-- Configuring done
-- Generating done
CMake Warning:
  Manually-specified variables were not used by the project:
    CMAKE_CXX_FLAGS_RELEASE
    CMAKE_C_FLAGS_RELEASE
    CMAKE_Fortran_FLAGS_RELEASE
    CMAKE_INSTALL_DO_STRIP
    INCLUDE_INSTALL_DIR
    LIB_SUFFIX
    SHARE_INSTALL_PREFIX
    SYSCONF_INSTALL_DIR
-- Build files have been written to: /builddir/build/BUILD/libsonata-0.1.11/redhat-linux-build
+ /usr/bin/cmake --build redhat-linux-build -j2 --verbose
/usr/bin/cmake -S/builddir/build/BUILD/libsonata-0.1.11 -B/builddir/build/BUILD/libsonata-0.1.11/redhat-linux-build --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/libsonata-0.1.11/redhat-linux-build/CMakeFiles /builddir/build/BUILD/libsonata-0.1.11/redhat-linux-build//CMakeFiles/progress.marks
/usr/bin/gmake  -f CMakeFiles/Makefile2 all
gmake[1]: Entering directory '/builddir/build/BUILD/libsonata-0.1.11/redhat-linux-build'
/usr/bin/gmake  -f CMakeFiles/sonata_shared.dir/build.make CMakeFiles/sonata_shared.dir/depend
/usr/bin/gmake  -f CMakeFiles/sonata_static.dir/build.make CMakeFiles/sonata_static.dir/depend
gmake[2]: Entering directory '/builddir/build/BUILD/libsonata-0.1.11/redhat-linux-build'
cd /builddir/build/BUILD/libsonata-0.1.11/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsonata-0.1.11 /builddir/build/BUILD/libsonata-0.1.11 /builddir/build/BUILD/libsonata-0.1.11/redhat-linux-build /builddir/build/BUILD/libsonata-0.1.11/redhat-linux-build /builddir/build/BUILD/libsonata-0.1.11/redhat-linux-build/CMakeFiles/sonata_shared.dir/DependInfo.cmake --color=
gmake[2]: Entering directory '/builddir/build/BUILD/libsonata-0.1.11/redhat-linux-build'
cd /builddir/build/BUILD/libsonata-0.1.11/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsonata-0.1.11 /builddir/build/BUILD/libsonata-0.1.11 /builddir/build/BUILD/libsonata-0.1.11/redhat-linux-build /builddir/build/BUILD/libsonata-0.1.11/redhat-linux-build /builddir/build/BUILD/libsonata-0.1.11/redhat-linux-build/CMakeFiles/sonata_static.dir/DependInfo.cmake --color=
gmake[2]: Leaving directory '/builddir/build/BUILD/libsonata-0.1.11/redhat-linux-build'
/usr/bin/gmake  -f CMakeFiles/sonata_shared.dir/build.make CMakeFiles/sonata_shared.dir/build
gmake[2]: Entering directory '/builddir/build/BUILD/libsonata-0.1.11/redhat-linux-build'
gmake[2]: Leaving directory '/builddir/build/BUILD/libsonata-0.1.11/redhat-linux-build'
/usr/bin/gmake  -f CMakeFiles/sonata_static.dir/build.make CMakeFiles/sonata_static.dir/build
gmake[2]: Entering directory '/builddir/build/BUILD/libsonata-0.1.11/redhat-linux-build'
[  2%] Building CXX object CMakeFiles/sonata_shared.dir/src/common.cpp.o
/usr/bin/g++ -DBOOST_ALL_NO_LIB -DFMT_HEADER_ONLY=1 -DH5_USE_BOOST -DMPI_NO_CPPBIND -DSONATA_DLL -DSONATA_DLL_EXPORTS -Dsonata_shared_EXPORTS -I/builddir/build/BUILD/libsonata-0.1.11/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -std=gnu++17 -MD -MT CMakeFiles/sonata_shared.dir/src/common.cpp.o -MF CMakeFiles/sonata_shared.dir/src/common.cpp.o.d -o CMakeFiles/sonata_shared.dir/src/common.cpp.o -c /builddir/build/BUILD/libsonata-0.1.11/src/common.cpp
[  5%] Building CXX object CMakeFiles/sonata_static.dir/src/common.cpp.o
/usr/bin/g++ -DFMT_HEADER_ONLY=1 -I/builddir/build/BUILD/libsonata-0.1.11/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -std=gnu++17 -MD -MT CMakeFiles/sonata_static.dir/src/common.cpp.o -MF CMakeFiles/sonata_static.dir/src/common.cpp.o.d -o CMakeFiles/sonata_static.dir/src/common.cpp.o -c /builddir/build/BUILD/libsonata-0.1.11/src/common.cpp
[  8%] Building CXX object CMakeFiles/sonata_shared.dir/src/config.cpp.o
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cd /builddir/build/BUILD/libsonata-0.1.11/redhat-linux-build/python && /usr/bin/g++ -DBOOST_ALL_NO_LIB -DFMT_HEADER_ONLY=1 -DH5_USE_BOOST -DMPI_NO_CPPBIND -Dsonata_python_EXPORTS -I/builddir/build/BUILD/libsonata-0.1.11/include -isystem /usr/include/python3.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -std=gnu++17 -MD -MT python/CMakeFiles/sonata_python.dir/bindings.cpp.o -MF CMakeFiles/sonata_python.dir/bindings.cpp.o.d -o CMakeFiles/sonata_python.dir/bindings.cpp.o -c /builddir/build/BUILD/libsonata-0.1.11/python/bindings.cpp
/builddir/build/BUILD/libsonata-0.1.11/python/bindings.cpp: In lambda function:
/builddir/build/BUILD/libsonata-0.1.11/python/bindings.cpp:417:39: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'pybind11::ssize_t' {aka 'long int'} [-Wsign-compare]
  417 |                  for (size_t i = 0; i < raw.shape(0); ++i) {
      |                                     ~~^~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/libsonata-0.1.11/include/bbp/sonata/edges.h:13,
                 from /builddir/build/BUILD/libsonata-0.1.11/include/bbp/sonata/config.h:20,
                 from /builddir/build/BUILD/libsonata-0.1.11/python/bindings.cpp:6:
/builddir/build/BUILD/libsonata-0.1.11/include/bbp/sonata/population.h: In instantiation of 'static bbp::sonata::Selection bbp::sonata::Selection::fromValues(Iterator, Iterator) [with Iterator = const long int*]':
/builddir/build/BUILD/libsonata-0.1.11/python/bindings.cpp:423:46:   required from here
/builddir/build/BUILD/libsonata-0.1.11/include/bbp/sonata/population.h:77:15: warning: comparison of integer expressions of different signedness: 'const long int' and 'long unsigned int' [-Wsign-compare]
   77 |         if (v == range.second) {
      |             ~~^~~~~~~~~~~~~~~
[ 67%] Building CXX object CMakeFiles/sonata_shared.dir/src/utils.cpp.o
/usr/bin/g++ -DBOOST_ALL_NO_LIB -DFMT_HEADER_ONLY=1 -DH5_USE_BOOST -DMPI_NO_CPPBIND -DSONATA_DLL -DSONATA_DLL_EXPORTS -Dsonata_shared_EXPORTS -I/builddir/build/BUILD/libsonata-0.1.11/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -std=gnu++17 -MD -MT CMakeFiles/sonata_shared.dir/src/utils.cpp.o -MF CMakeFiles/sonata_shared.dir/src/utils.cpp.o.d -o CMakeFiles/sonata_shared.dir/src/utils.cpp.o -c /builddir/build/BUILD/libsonata-0.1.11/src/utils.cpp
[ 70%] Building CXX object CMakeFiles/sonata_shared.dir/src/version.cpp.o
/usr/bin/g++ -DBOOST_ALL_NO_LIB -DFMT_HEADER_ONLY=1 -DH5_USE_BOOST -DMPI_NO_CPPBIND -DSONATA_DLL -DSONATA_DLL_EXPORTS -Dsonata_shared_EXPORTS -I/builddir/build/BUILD/libsonata-0.1.11/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -std=gnu++17 -MD -MT CMakeFiles/sonata_shared.dir/src/version.cpp.o -MF CMakeFiles/sonata_shared.dir/src/version.cpp.o.d -o CMakeFiles/sonata_shared.dir/src/version.cpp.o -c /builddir/build/BUILD/libsonata-0.1.11/redhat-linux-build/src/version.cpp
[ 73%] Linking CXX shared library libsonata.so
/usr/bin/cmake -E cmake_link_script CMakeFiles/sonata_shared.dir/link.txt --verbose=1
/usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libsonata.so.0.1 -o libsonata.so.0.1.11 CMakeFiles/sonata_shared.dir/src/common.cpp.o CMakeFiles/sonata_shared.dir/src/config.cpp.o CMakeFiles/sonata_shared.dir/src/edge_index.cpp.o CMakeFiles/sonata_shared.dir/src/edges.cpp.o CMakeFiles/sonata_shared.dir/src/hdf5_mutex.cpp.o CMakeFiles/sonata_shared.dir/src/node_sets.cpp.o CMakeFiles/sonata_shared.dir/src/nodes.cpp.o CMakeFiles/sonata_shared.dir/src/population.cpp.o CMakeFiles/sonata_shared.dir/src/report_reader.cpp.o CMakeFiles/sonata_shared.dir/src/utils.cpp.o CMakeFiles/sonata_shared.dir/src/version.cpp.o  /usr/lib64/libhdf5.so 
[ 76%] Linking CXX shared module _libsonata.cpython-311-x86_64-linux-gnu.so
cd /builddir/build/BUILD/libsonata-0.1.11/redhat-linux-build/python && /usr/bin/cmake -E cmake_link_script CMakeFiles/sonata_python.dir/link.txt --verbose=1
/usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -flto -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared  -o _libsonata.cpython-311-x86_64-linux-gnu.so CMakeFiles/sonata_python.dir/bindings.cpp.o  ../libsonata.a /usr/lib64/libhdf5.so 
/usr/bin/cmake -E cmake_symlink_library libsonata.so.0.1.11 libsonata.so.0.1 libsonata.so
gmake[2]: Leaving directory '/builddir/build/BUILD/libsonata-0.1.11/redhat-linux-build'
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gmake[2]: Entering directory '/builddir/build/BUILD/libsonata-0.1.11/redhat-linux-build'
cd /builddir/build/BUILD/libsonata-0.1.11/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsonata-0.1.11 /builddir/build/BUILD/libsonata-0.1.11/tests /builddir/build/BUILD/libsonata-0.1.11/redhat-linux-build /builddir/build/BUILD/libsonata-0.1.11/redhat-linux-build/tests /builddir/build/BUILD/libsonata-0.1.11/redhat-linux-build/tests/CMakeFiles/unittests.dir/DependInfo.cmake --color=
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[ 79%] Building CXX object tests/CMakeFiles/unittests.dir/main.cpp.o
cd /builddir/build/BUILD/libsonata-0.1.11/redhat-linux-build/tests && /usr/bin/g++ -DBOOST_ALL_NO_LIB -DH5_USE_BOOST -DMPI_NO_CPPBIND -DSONATA_DLL -I/builddir/build/BUILD/libsonata-0.1.11/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=gnu++17 -MD -MT tests/CMakeFiles/unittests.dir/main.cpp.o -MF CMakeFiles/unittests.dir/main.cpp.o.d -o CMakeFiles/unittests.dir/main.cpp.o -c /builddir/build/BUILD/libsonata-0.1.11/tests/main.cpp
gmake[2]: Leaving directory '/builddir/build/BUILD/libsonata-0.1.11/redhat-linux-build'
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[ 82%] Building CXX object tests/CMakeFiles/unittests.dir/test_config.cpp.o
cd /builddir/build/BUILD/libsonata-0.1.11/redhat-linux-build/tests && /usr/bin/g++ -DBOOST_ALL_NO_LIB -DH5_USE_BOOST -DMPI_NO_CPPBIND -DSONATA_DLL -I/builddir/build/BUILD/libsonata-0.1.11/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=gnu++17 -MD -MT tests/CMakeFiles/unittests.dir/test_config.cpp.o -MF CMakeFiles/unittests.dir/test_config.cpp.o.d -o CMakeFiles/unittests.dir/test_config.cpp.o -c /builddir/build/BUILD/libsonata-0.1.11/tests/test_config.cpp
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[ 88%] Building CXX object tests/CMakeFiles/unittests.dir/test_node_sets.cpp.o
cd /builddir/build/BUILD/libsonata-0.1.11/redhat-linux-build/tests && /usr/bin/g++ -DBOOST_ALL_NO_LIB -DH5_USE_BOOST -DMPI_NO_CPPBIND -DSONATA_DLL -I/builddir/build/BUILD/libsonata-0.1.11/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=gnu++17 -MD -MT tests/CMakeFiles/unittests.dir/test_node_sets.cpp.o -MF CMakeFiles/unittests.dir/test_node_sets.cpp.o.d -o CMakeFiles/unittests.dir/test_node_sets.cpp.o -c /builddir/build/BUILD/libsonata-0.1.11/tests/test_node_sets.cpp
[ 91%] Building CXX object tests/CMakeFiles/unittests.dir/test_nodes.cpp.o
cd /builddir/build/BUILD/libsonata-0.1.11/redhat-linux-build/tests && /usr/bin/g++ -DBOOST_ALL_NO_LIB -DH5_USE_BOOST -DMPI_NO_CPPBIND -DSONATA_DLL -I/builddir/build/BUILD/libsonata-0.1.11/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=gnu++17 -MD -MT tests/CMakeFiles/unittests.dir/test_nodes.cpp.o -MF CMakeFiles/unittests.dir/test_nodes.cpp.o.d -o CMakeFiles/unittests.dir/test_nodes.cpp.o -c /builddir/build/BUILD/libsonata-0.1.11/tests/test_nodes.cpp
[ 94%] Building CXX object tests/CMakeFiles/unittests.dir/test_report_reader.cpp.o
cd /builddir/build/BUILD/libsonata-0.1.11/redhat-linux-build/tests && /usr/bin/g++ -DBOOST_ALL_NO_LIB -DH5_USE_BOOST -DMPI_NO_CPPBIND -DSONATA_DLL -I/builddir/build/BUILD/libsonata-0.1.11/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=gnu++17 -MD -MT tests/CMakeFiles/unittests.dir/test_report_reader.cpp.o -MF CMakeFiles/unittests.dir/test_report_reader.cpp.o.d -o CMakeFiles/unittests.dir/test_report_reader.cpp.o -c /builddir/build/BUILD/libsonata-0.1.11/tests/test_report_reader.cpp
In file included from /builddir/build/BUILD/libsonata-0.1.11/tests/test_report_reader.cpp:1:
/builddir/build/BUILD/libsonata-0.1.11/tests/test_report_reader.cpp: In function 'void testTimes(const std::vector<double>&, double, double, int)':
/builddir/build/BUILD/libsonata-0.1.11/tests/test_report_reader.cpp:8:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
    8 |     REQUIRE(size == vec.size());
      |             ~~~~~^~~~~~~~~~~~~
/builddir/build/BUILD/libsonata-0.1.11/tests/test_report_reader.cpp:9:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
    9 |     for (int i = 0; i < vec.size(); ++i) {
      |                     ~~^~~~~~~~~~~~
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cd /builddir/build/BUILD/libsonata-0.1.11/redhat-linux-build/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unittests.dir/link.txt --verbose=1
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cd /builddir/build/BUILD/libsonata-0.1.11/redhat-linux-build/tests && /usr/bin/cmake -D TEST_TARGET=unittests -D TEST_EXECUTABLE=/builddir/build/BUILD/libsonata-0.1.11/redhat-linux-build/tests/unittests -D TEST_EXECUTOR= -D TEST_WORKING_DIR=/builddir/build/BUILD/libsonata-0.1.11/tests -D TEST_SPEC= -D TEST_EXTRA_ARGS= -D TEST_PROPERTIES= -D TEST_PREFIX= -D TEST_SUFFIX= -D TEST_LIST=unittests_TESTS -D TEST_REPORTER= -D TEST_OUTPUT_DIR= -D TEST_OUTPUT_PREFIX= -D TEST_OUTPUT_SUFFIX= -D CTEST_FILE=/builddir/build/BUILD/libsonata-0.1.11/redhat-linux-build/tests/unittests_tests-b12d07c.cmake -P /usr/lib64/cmake/Catch2/CatchAddTests.cmake
gmake[2]: Leaving directory '/builddir/build/BUILD/libsonata-0.1.11/redhat-linux-build'
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/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/libsonata-0.1.11/redhat-linux-build/CMakeFiles 0
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+ cp -a COPYING.LESSER redhat-linux-build
+ cp -a MANIFEST.in redhat-linux-build
+ mkdir -p redhat-linux-build/python/libsonata/
+ cp -a python/libsonata/__init__.py redhat-linux-build/python/libsonata
+ pushd redhat-linux-build
~/build/BUILD/libsonata-0.1.11/redhat-linux-build ~/build/BUILD/libsonata-0.1.11
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+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes'
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Processing /builddir/build/BUILD/libsonata-0.1.11/redhat-linux-build
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  adding license file "COPYING.LESSER" (matched pattern "COPYING*")
  Preparing metadata (pyproject.toml): finished with status 'done'
Building wheels for collected packages: libsonata
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  running install_egg_info
  running egg_info
  creating python/libsonata.egg-info
  writing python/libsonata.egg-info/PKG-INFO
  writing dependency_links to python/libsonata.egg-info/dependency_links.txt
  writing requirements to python/libsonata.egg-info/requires.txt
  writing top-level names to python/libsonata.egg-info/top_level.txt
  writing manifest file 'python/libsonata.egg-info/SOURCES.txt'
  reading manifest file 'python/libsonata.egg-info/SOURCES.txt'
  reading manifest template 'MANIFEST.in'
  warning: no files found matching '*' under directory 'include'
  warning: no files found matching 'CMakeLists.txt'
  warning: no files found matching 'extlib/CMakeLists.txt'
  warning: no files found matching 'extlib/nlohmann/json.hpp'
  warning: no files found matching '*' under directory 'extlib/fmt/include'
  warning: no files found matching '*' under directory 'extlib/fmt/src'
  warning: no files found matching '*.cmake' under directory 'extlib/fmt/support/cmake'
  warning: no files found matching 'extlib/fmt/CMakeLists.txt'
  warning: no files found matching 'extlib/fmt/*.rst'
  warning: no files found matching '*' under directory 'extlib/HighFive/include'
  warning: no files found matching 'extlib/HighFive/CMakeLists.txt'
  warning: no files found matching 'extlib/HighFive/LICENSE'
  warning: no files found matching 'extlib/filesystem.hpp'
  warning: no files found matching '*' under directory 'python/pybind11/include'
  warning: no files found matching '*.cmake' under directory 'python/pybind11/tools'
  warning: no files found matching 'python/pybind11/CMakeLists.txt'
  warning: no files found matching 'python/pybind11/LICENSE'
  adding license file 'COPYING.LESSER'
  writing manifest file 'python/libsonata.egg-info/SOURCES.txt'
  Copying python/libsonata.egg-info to build/bdist.linux-x86_64/wheel/libsonata-0.1.11-py3.11.egg-info
  running install_scripts
  adding license file "COPYING.LESSER" (matched pattern "COPYING*")
  creating build/bdist.linux-x86_64/wheel/libsonata-0.1.11.dist-info/WHEEL
  creating '/builddir/build/BUILD/libsonata-0.1.11/.pyproject-builddir/pip-wheel-cv7_a56e/tmp06y7_o3a/libsonata-0.1.11-cp311-cp311-linux_x86_64.whl' and adding 'build/bdist.linux-x86_64/wheel' to it
  adding 'libsonata/__init__.py'
  adding 'libsonata-0.1.11.dist-info/COPYING.LESSER'
  adding 'libsonata-0.1.11.dist-info/METADATA'
  adding 'libsonata-0.1.11.dist-info/WHEEL'
  adding 'libsonata-0.1.11.dist-info/top_level.txt'
  adding 'libsonata-0.1.11.dist-info/RECORD'
  removing build/bdist.linux-x86_64/wheel
  Building wheel for libsonata (pyproject.toml): finished with status 'done'
  Created wheel for libsonata: filename=libsonata-0.1.11-cp311-cp311-linux_x86_64.whl size=7942 sha256=62f2853d7d4ead0babb6875b68051549badc87f60ea47492c8308e0a751672a6
  Stored in directory: /builddir/.cache/pip/wheels/98/b9/bf/93df8a249826f6a9cbdc87a55ff009770ba6e075d6d09e4848
Successfully built libsonata
+ popd
~/build/BUILD/libsonata-0.1.11
+ pushd tests/data
~/build/BUILD/libsonata-0.1.11/tests/data ~/build/BUILD/libsonata-0.1.11
+ /usr/bin/python3 generate.py
+ popd
~/build/BUILD/libsonata-0.1.11
+ mkdir -p redhat-linux-build/tests
+ cp -a tests/data redhat-linux-build/tests
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.M9kCPJ
+ umask 022
+ cd /builddir/build/BUILD
+ '[' /builddir/build/BUILDROOT/libsonata-0.1.11-8.fc38.x86_64 '!=' / ']'
+ rm -rf /builddir/build/BUILDROOT/libsonata-0.1.11-8.fc38.x86_64
++ dirname /builddir/build/BUILDROOT/libsonata-0.1.11-8.fc38.x86_64
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir /builddir/build/BUILDROOT/libsonata-0.1.11-8.fc38.x86_64
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules'
+ export FCFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes'
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd libsonata-0.1.11
+ DESTDIR=/builddir/build/BUILDROOT/libsonata-0.1.11-8.fc38.x86_64
+ /usr/bin/cmake --install redhat-linux-build
-- Install configuration: ""
-- Installing: /builddir/build/BUILDROOT/libsonata-0.1.11-8.fc38.x86_64/usr/lib64/libsonata.so.0.1.11
-- Installing: /builddir/build/BUILDROOT/libsonata-0.1.11-8.fc38.x86_64/usr/lib64/libsonata.so.0.1
-- Installing: /builddir/build/BUILDROOT/libsonata-0.1.11-8.fc38.x86_64/usr/lib64/libsonata.so
-- Installing: /builddir/build/BUILDROOT/libsonata-0.1.11-8.fc38.x86_64/usr/lib64/libsonata.a
-- Installing: /builddir/build/BUILDROOT/libsonata-0.1.11-8.fc38.x86_64/usr/include/bbp
-- Installing: /builddir/build/BUILDROOT/libsonata-0.1.11-8.fc38.x86_64/usr/include/bbp/sonata
-- Installing: /builddir/build/BUILDROOT/libsonata-0.1.11-8.fc38.x86_64/usr/include/bbp/sonata/report_reader.h
-- Installing: /builddir/build/BUILDROOT/libsonata-0.1.11-8.fc38.x86_64/usr/include/bbp/sonata/population.h
-- Installing: /builddir/build/BUILDROOT/libsonata-0.1.11-8.fc38.x86_64/usr/include/bbp/sonata/optional.hpp
-- Installing: /builddir/build/BUILDROOT/libsonata-0.1.11-8.fc38.x86_64/usr/include/bbp/sonata/nodes.h
-- Installing: /builddir/build/BUILDROOT/libsonata-0.1.11-8.fc38.x86_64/usr/include/bbp/sonata/node_sets.h
-- Installing: /builddir/build/BUILDROOT/libsonata-0.1.11-8.fc38.x86_64/usr/include/bbp/sonata/edges.h
-- Installing: /builddir/build/BUILDROOT/libsonata-0.1.11-8.fc38.x86_64/usr/include/bbp/sonata/config.h
-- Installing: /builddir/build/BUILDROOT/libsonata-0.1.11-8.fc38.x86_64/usr/include/bbp/sonata/common.h
-- Installing: /builddir/build/BUILDROOT/libsonata-0.1.11-8.fc38.x86_64/usr/share/sonata/CMake/sonata-config.cmake
-- Installing: /builddir/build/BUILDROOT/libsonata-0.1.11-8.fc38.x86_64/usr/share/sonata/CMake/sonata-targets.cmake
-- Installing: /builddir/build/BUILDROOT/libsonata-0.1.11-8.fc38.x86_64/usr/share/sonata/CMake/sonata-targets-noconfig.cmake
+ rm -rf /builddir/build/BUILDROOT/libsonata-0.1.11-8.fc38.x86_64//usr/lib64/libsonata.a
+ install -p -m 0655 -D -t /builddir/build/BUILDROOT/libsonata-0.1.11-8.fc38.x86_64//usr/lib64/python3.11/site-packages/libsonata/ redhat-linux-build/python/_libsonata.cpython-311-x86_64-linux-gnu.so
+ export SETUPTOOLS_SCM_PRETEND_VERSION=0.1.11
+ SETUPTOOLS_SCM_PRETEND_VERSION=0.1.11
+ pushd redhat-linux-build
~/build/BUILD/libsonata-0.1.11/redhat-linux-build ~/build/BUILD/libsonata-0.1.11
++ xargs basename --multiple
++ ls /builddir/build/BUILD/libsonata-0.1.11/pyproject-wheeldir/libsonata-0.1.11-cp311-cp311-linux_x86_64.whl
++ sed -E 's/([^-]+)-([^-]+)-.+\.whl/\1==\2/'
+ specifier=libsonata==0.1.11
+ TMPDIR=/builddir/build/BUILD/libsonata-0.1.11/.pyproject-builddir
+ /usr/bin/python3 -m pip install --root /builddir/build/BUILDROOT/libsonata-0.1.11-8.fc38.x86_64 --prefix /usr --no-deps --disable-pip-version-check --progress-bar off --verbose --ignore-installed --no-warn-script-location --no-index --no-cache-dir --find-links /builddir/build/BUILD/libsonata-0.1.11/pyproject-wheeldir libsonata==0.1.11
Using pip 22.2 from /usr/lib/python3.11/site-packages/pip (python 3.11)
Looking in links: /builddir/build/BUILD/libsonata-0.1.11/pyproject-wheeldir
Processing /builddir/build/BUILD/libsonata-0.1.11/pyproject-wheeldir/libsonata-0.1.11-cp311-cp311-linux_x86_64.whl
Installing collected packages: libsonata
Successfully installed libsonata-0.1.11
+ '[' -d /builddir/build/BUILDROOT/libsonata-0.1.11-8.fc38.x86_64/usr/bin ']'
+ rm -f /builddir/build/BUILD/libsonata-0.1.11-8.fc38.x86_64-pyproject-ghost-distinfo
+ site_dirs=()
+ '[' -d /builddir/build/BUILDROOT/libsonata-0.1.11-8.fc38.x86_64/usr/lib/python3.11/site-packages ']'
+ '[' /builddir/build/BUILDROOT/libsonata-0.1.11-8.fc38.x86_64/usr/lib64/python3.11/site-packages '!=' /builddir/build/BUILDROOT/libsonata-0.1.11-8.fc38.x86_64/usr/lib/python3.11/site-packages ']'
+ '[' -d /builddir/build/BUILDROOT/libsonata-0.1.11-8.fc38.x86_64/usr/lib64/python3.11/site-packages ']'
+ site_dirs+=("/usr/lib64/python3.11/site-packages")
+ for site_dir in ${site_dirs[@]}
+ for distinfo in /builddir/build/BUILDROOT/libsonata-0.1.11-8.fc38.x86_64$site_dir/*.dist-info
+ echo '%ghost /usr/lib64/python3.11/site-packages/libsonata-0.1.11.dist-info'
+ sed -i s/pip/rpm/ /builddir/build/BUILDROOT/libsonata-0.1.11-8.fc38.x86_64/usr/lib64/python3.11/site-packages/libsonata-0.1.11.dist-info/INSTALLER
+ PYTHONPATH=/usr/lib/rpm/redhat
+ /usr/bin/python3 -B /usr/lib/rpm/redhat/pyproject_preprocess_record.py --buildroot /builddir/build/BUILDROOT/libsonata-0.1.11-8.fc38.x86_64 --record /builddir/build/BUILDROOT/libsonata-0.1.11-8.fc38.x86_64/usr/lib64/python3.11/site-packages/libsonata-0.1.11.dist-info/RECORD --output /builddir/build/BUILD/libsonata-0.1.11-8.fc38.x86_64-pyproject-record
+ rm -fv /builddir/build/BUILDROOT/libsonata-0.1.11-8.fc38.x86_64/usr/lib64/python3.11/site-packages/libsonata-0.1.11.dist-info/RECORD
removed '/builddir/build/BUILDROOT/libsonata-0.1.11-8.fc38.x86_64/usr/lib64/python3.11/site-packages/libsonata-0.1.11.dist-info/RECORD'
+ rm -fv /builddir/build/BUILDROOT/libsonata-0.1.11-8.fc38.x86_64/usr/lib64/python3.11/site-packages/libsonata-0.1.11.dist-info/REQUESTED
removed '/builddir/build/BUILDROOT/libsonata-0.1.11-8.fc38.x86_64/usr/lib64/python3.11/site-packages/libsonata-0.1.11.dist-info/REQUESTED'
++ cut -f1 '-d '
++ wc -l /builddir/build/BUILD/libsonata-0.1.11-8.fc38.x86_64-pyproject-ghost-distinfo
+ lines=1
+ '[' 1 -ne 1 ']'
+ /usr/bin/python3 /usr/lib/rpm/redhat/pyproject_save_files.py --output-files /builddir/build/BUILD/libsonata-0.1.11-8.fc38.x86_64-pyproject-files --output-modules /builddir/build/BUILD/libsonata-0.1.11-8.fc38.x86_64-pyproject-modules --buildroot /builddir/build/BUILDROOT/libsonata-0.1.11-8.fc38.x86_64 --sitelib /usr/lib/python3.11/site-packages --sitearch /usr/lib64/python3.11/site-packages --python-version 3.11 --pyproject-record /builddir/build/BUILD/libsonata-0.1.11-8.fc38.x86_64-pyproject-record --prefix /usr libsonata
+ popd
+ /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 0.1.11-8.fc38 --unique-debug-suffix -0.1.11-8.fc38.x86_64 --unique-debug-src-base libsonata-0.1.11-8.fc38.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/libsonata-0.1.11
~/build/BUILD/libsonata-0.1.11
extracting debug info from /builddir/build/BUILDROOT/libsonata-0.1.11-8.fc38.x86_64/usr/lib64/libsonata.so.0.1.11
extracting debug info from /builddir/build/BUILDROOT/libsonata-0.1.11-8.fc38.x86_64/usr/lib64/python3.11/site-packages/libsonata/_libsonata.cpython-311-x86_64-linux-gnu.so
original debug info size: 38116kB, size after compression: 30652kB
/usr/bin/sepdebugcrcfix: Updated 2 CRC32s, 0 CRC32s did match.
470 blocks
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/check-rpaths
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
+ /usr/lib/rpm/brp-remove-la-files
+ /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0
Bytecompiling .py files below /builddir/build/BUILDROOT/libsonata-0.1.11-8.fc38.x86_64/usr/lib/debug/usr/lib64/python3.11 using python3.11
Bytecompiling .py files below /builddir/build/BUILDROOT/libsonata-0.1.11-8.fc38.x86_64/usr/lib64/python3.11 using python3.11
+ /usr/lib/rpm/redhat/brp-python-hardlink
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.BxEHDi
+ umask 022
+ cd /builddir/build/BUILD
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules'
+ export FCFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes'
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd libsonata-0.1.11
+ cd redhat-linux-build
+ /usr/bin/ctest --output-on-failure --force-new-ctest-process -j2 tests
Test project /builddir/build/BUILD/libsonata-0.1.11/redhat-linux-build
      Start  1: Selection
      Start  2: SpikeReader
 1/30 Test  #1: Selection .......................................   Passed    0.00 sec
      Start  3: SomaReportReader limits
 2/30 Test  #2: SpikeReader .....................................   Passed    0.01 sec
      Start  4: SomaReportReader
 3/30 Test  #3: SomaReportReader limits .........................   Passed    0.00 sec
      Start  5: ElementReportReader limits
 4/30 Test  #4: SomaReportReader ................................   Passed    0.01 sec
      Start  6: ElementReportReader
 5/30 Test  #5: ElementReportReader limits ......................   Passed    0.00 sec
      Start  7: NodePopulation
 6/30 Test  #6: ElementReportReader .............................   Passed    0.01 sec
      Start  8: NodePopulationMove
 7/30 Test  #7: NodePopulation ..................................   Passed    0.01 sec
      Start  9: NodePopulationSelectAll
 8/30 Test  #8: NodePopulationMove ..............................   Passed    0.00 sec
      Start 10: NodePopulationmatchAttributeValues
 9/30 Test  #9: NodePopulationSelectAll .........................   Passed    0.00 sec
      Start 11: NodePopulationmatchAttributeValues - int8_t
10/30 Test #10: NodePopulationmatchAttributeValues ..............   Passed    0.01 sec
      Start 12: NodePopulationmatchAttributeValues - uint8_t
11/30 Test #11: NodePopulationmatchAttributeValues - int8_t .....   Passed    0.00 sec
      Start 13: NodePopulationmatchAttributeValues - int16_t
12/30 Test #12: NodePopulationmatchAttributeValues - uint8_t ....   Passed    0.00 sec
      Start 14: NodePopulationmatchAttributeValues - uint16_t
13/30 Test #13: NodePopulationmatchAttributeValues - int16_t ....   Passed    0.01 sec
      Start 15: NodePopulationmatchAttributeValues - int32_t
14/30 Test #14: NodePopulationmatchAttributeValues - uint16_t ...   Passed    0.00 sec
      Start 16: NodePopulationmatchAttributeValues - uint32_t
15/30 Test #15: NodePopulationmatchAttributeValues - int32_t ....   Passed    0.01 sec
      Start 17: NodePopulationmatchAttributeValues - int64_t
16/30 Test #16: NodePopulationmatchAttributeValues - uint32_t ...   Passed    0.00 sec
      Start 18: NodePopulationmatchAttributeValues - uint64_t
17/30 Test #17: NodePopulationmatchAttributeValues - int64_t ....   Passed    0.01 sec
      Start 19: NodeSetParse
18/30 Test #18: NodePopulationmatchAttributeValues - uint64_t ...   Passed    0.00 sec
      Start 20: NodeSetBasic
19/30 Test #19: NodeSetParse ....................................   Passed    0.01 sec
      Start 21: NodeSetCompound
20/30 Test #21: NodeSetCompound .................................   Passed    0.00 sec
      Start 22: NodeSet
21/30 Test #20: NodeSetBasic ....................................   Passed    0.01 sec
      Start 23: EdgePopulation
22/30 Test #22: NodeSet .........................................   Passed    0.00 sec
      Start 24: EdgePopulationSelectAll
23/30 Test #24: EdgePopulationSelectAll .........................   Passed    0.00 sec
      Start 25: EdgePopulation::writeIndices
24/30 Test #23: EdgePopulation ..................................   Passed    0.01 sec
      Start 26: EdgeStorage
25/30 Test #26: EdgeStorage .....................................   Passed    0.00 sec
      Start 27: CircuitConfig
26/30 Test #25: EdgePopulation::writeIndices ....................   Passed    0.01 sec
      Start 28: SimulationConfig
27/30 Test #28: SimulationConfig ................................   Passed    0.00 sec
      Start 29: SONATA
28/30 Test #27: CircuitConfig ...................................   Passed    0.01 sec
      Start 30: unittests
29/30 Test #29: SONATA ..........................................   Passed    0.00 sec
30/30 Test #30: unittests .......................................   Passed    0.02 sec
100% tests passed, 0 tests failed out of 30
Total Test time (real) =   0.11 sec
+ cd -
/builddir/build/BUILD/libsonata-0.1.11
~/build/BUILD/libsonata-0.1.11/python/tests ~/build/BUILD/libsonata-0.1.11
+ pushd python/tests
+ export PYTHONPATH=/builddir/build/BUILDROOT/libsonata-0.1.11-8.fc38.x86_64//usr/lib64/python3.11/site-packages/
+ PYTHONPATH=/builddir/build/BUILDROOT/libsonata-0.1.11-8.fc38.x86_64//usr/lib64/python3.11/site-packages/
+ /usr/bin/python3 -m unittest -v
test_basic (test.TestCircuitConfig.test_basic) ... ok
test_expanded_json (test.TestCircuitConfig.test_expanded_json) ... ok
test_get_population_properties (test.TestCircuitConfig.test_get_population_properties) ... ok
test_afferent_edges (test.TestEdgePopulation.test_afferent_edges) ... ok
test_connecting_edges (test.TestEdgePopulation.test_connecting_edges) ... ok
test_efferent_edges (test.TestEdgePopulation.test_efferent_edges) ... ok
test_select_all (test.TestEdgePopulation.test_select_all) ... ok
test_source (test.TestEdgePopulation.test_source) ... ok
test_source_nodes (test.TestEdgePopulation.test_source_nodes) ... ok
test_target (test.TestEdgePopulation.test_target) ... ok
test_target_nodes (test.TestEdgePopulation.test_target_nodes) ... ok
test_get_all_population (test.TestElementReportPopulation.test_get_all_population) ... ok
test_get_inexistant_population (test.TestElementReportPopulation.test_get_inexistant_population) ... HDF5-DIAG: Error detected in HDF5 (1.12.1) thread 0:
  #000: ../../src/H5G.c line 510 in H5Gopen2(): unable to open group
    major: Symbol table
    minor: Can't open object
  #001: ../../src/H5VLcallback.c line 4187 in H5VL_group_open(): group open failed
    major: Virtual Object Layer
    minor: Can't open object
  #002: ../../src/H5VLcallback.c line 4154 in H5VL__group_open(): group open failed
    major: Virtual Object Layer
    minor: Can't open object
  #003: ../../src/H5VLnative_group.c line 123 in H5VL__native_group_open(): unable to open group
    major: Symbol table
    minor: Can't open object
  #004: ../../src/H5Gint.c line 270 in H5G__open_name(): group not found
    major: Symbol table
    minor: Object not found
  #005: ../../src/H5Gloc.c line 442 in H5G_loc_find(): can't find object
    major: Symbol table
    minor: Object not found
  #006: ../../src/H5Gtraverse.c line 837 in H5G_traverse(): internal path traversal failed
    major: Symbol table
    minor: Object not found
  #007: ../../src/H5Gtraverse.c line 613 in H5G__traverse_real(): traversal operator failed
    major: Symbol table
    minor: Callback failed
  #008: ../../src/H5Gloc.c line 399 in H5G__loc_find_cb(): object 'foobar' doesn't exist
    major: Symbol table
    minor: Object not found
ok
test_get_node_id_element_id_mapping (test.TestElementReportPopulation.test_get_node_id_element_id_mapping) ... ok
test_get_node_ids (test.TestElementReportPopulation.test_get_node_ids) ... ok
test_get_population (test.TestElementReportPopulation.test_get_population) ... ok
test_get_reports_from_population (test.TestElementReportPopulation.test_get_reports_from_population) ... ok
test_attribute_names (test.TestNodePopulation.test_attribute_names) ... ok
test_enumeration_names (test.TestNodePopulation.test_enumeration_names) ... ok
test_enumeration_values (test.TestNodePopulation.test_enumeration_values) ... ok
test_get_attribute (test.TestNodePopulation.test_get_attribute) ... ok
test_get_dynamics_attribute (test.TestNodePopulation.test_get_dynamics_attribute) ... ok
test_match_values (test.TestNodePopulation.test_match_values) ... ok
test_name (test.TestNodePopulation.test_name) ... ok
test_select_all (test.TestNodePopulation.test_select_all) ... ok
test_size (test.TestNodePopulation.test_size) ... ok
test_BasicScalarFailFloat (test.TestNodePopulationFailure.test_BasicScalarFailFloat) ... ok
test_BasicScalarFailNegativeNodeIds (test.TestNodePopulationFailure.test_BasicScalarFailNegativeNodeIds) ... ok
test_BasicScalarFailPopulation (test.TestNodePopulationFailure.test_BasicScalarFailPopulation) ... ok
test_CorrectStructure (test.TestNodePopulationFailure.test_CorrectStructure) ... ok
test_FailCompoundWithInt (test.TestNodePopulationFailure.test_FailCompoundWithInt) ... ok
test_FaileRecursiveCompound (test.TestNodePopulationFailure.test_FaileRecursiveCompound) ... ok
test_MissingBasic (test.TestNodePopulationFailure.test_MissingBasic) ... ok
test_BasicScalarAnded (test.TestNodePopulationNodeSet.test_BasicScalarAnded) ... ok
test_BasicScalarEnum (test.TestNodePopulationNodeSet.test_BasicScalarEnum) ... ok
test_BasicScalarInt (test.TestNodePopulationNodeSet.test_BasicScalarInt) ... ok
test_BasicScalarNodeId (test.TestNodePopulationNodeSet.test_BasicScalarNodeId) ... ok
test_BasicScalarPopulation (test.TestNodePopulationNodeSet.test_BasicScalarPopulation) ... ok
test_BasicScalarString (test.TestNodePopulationNodeSet.test_BasicScalarString) ... ok
test_NodeSetCompound (test.TestNodePopulationNodeSet.test_NodeSetCompound) ... ok
test_NodeSet_toJSON (test.TestNodePopulationNodeSet.test_NodeSet_toJSON) ... ok
test_basic (test.TestSelection.test_basic) ... ok
test_comparison (test.TestSelection.test_comparison) ... ok
test_dtypes (test.TestSelection.test_dtypes) ... /builddir/build/BUILD/libsonata-0.1.11/python/tests/test.py:37: DeprecationWarning: `np.int` is a deprecated alias for the builtin `int`. To silence this warning, use `int` by itself. Doing this will not modify any behavior and is safe. When replacing `np.int`, you may wish to use e.g. `np.int64` or `np.int32` to specify the precision. If you wish to review your current use, check the release note link for additional information.
Deprecated in NumPy 1.20; for more details and guidance: https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations
  for dtype in (np.int, np.int16, np.int32, np.int64, ):
ok
test_from_ranges (test.TestSelection.test_from_ranges) ... ok
test_from_values (test.TestSelection.test_from_values) ... ok
test_from_values_empty (test.TestSelection.test_from_values_empty) ... ok
test_union_intersection (test.TestSelection.test_union_intersection) ... ok
test_basic (test.TestSimulationConfig.test_basic) ... ok
test_json (test.TestSimulationConfig.test_json) ... ok
test_get_all_population (test.TestSomaReportPopulation.test_get_all_population) ... ok
test_get_inexistant_population (test.TestSomaReportPopulation.test_get_inexistant_population) ... HDF5-DIAG: Error detected in HDF5 (1.12.1) thread 0:
  #000: ../../src/H5G.c line 510 in H5Gopen2(): unable to open group
    major: Symbol table
    minor: Can't open object
  #001: ../../src/H5VLcallback.c line 4187 in H5VL_group_open(): group open failed
    major: Virtual Object Layer
    minor: Can't open object
  #002: ../../src/H5VLcallback.c line 4154 in H5VL__group_open(): group open failed
    major: Virtual Object Layer
    minor: Can't open object
  #003: ../../src/H5VLnative_group.c line 123 in H5VL__native_group_open(): unable to open group
    major: Symbol table
    minor: Can't open object
  #004: ../../src/H5Gint.c line 270 in H5G__open_name(): group not found
    major: Symbol table
    minor: Object not found
  #005: ../../src/H5Gloc.c line 442 in H5G_loc_find(): can't find object
    major: Symbol table
    minor: Object not found
  #006: ../../src/H5Gtraverse.c line 837 in H5G_traverse(): internal path traversal failed
    major: Symbol table
    minor: Object not found
  #007: ../../src/H5Gtraverse.c line 613 in H5G__traverse_real(): traversal operator failed
    major: Symbol table
    minor: Callback failed
  #008: ../../src/H5Gloc.c line 399 in H5G__loc_find_cb(): object 'foobar' doesn't exist
    major: Symbol table
    minor: Object not found
ok
test_get_node_id_element_id_mapping (test.TestSomaReportPopulation.test_get_node_id_element_id_mapping) ... ok
test_get_population (test.TestSomaReportPopulation.test_get_population) ... ok
test_get_reports_from_population (test.TestSomaReportPopulation.test_get_reports_from_population) ... ok
test_getTimes_from_population (test.TestSpikePopulation.test_getTimes_from_population) ... ok
test_get_all_populations (test.TestSpikePopulation.test_get_all_populations) ... ok
test_get_inexistant_population (test.TestSpikePopulation.test_get_inexistant_population) ... HDF5-DIAG: Error detected in HDF5 (1.12.1) thread 0:
  #000: ../../src/H5G.c line 510 in H5Gopen2(): unable to open group
    major: Symbol table
    minor: Can't open object
  #001: ../../src/H5VLcallback.c line 4187 in H5VL_group_open(): group open failed
    major: Virtual Object Layer
    minor: Can't open object
  #002: ../../src/H5VLcallback.c line 4154 in H5VL__group_open(): group open failed
    major: Virtual Object Layer
    minor: Can't open object
  #003: ../../src/H5VLnative_group.c line 123 in H5VL__native_group_open(): unable to open group
    major: Symbol table
    minor: Can't open object
  #004: ../../src/H5Gint.c line 270 in H5G__open_name(): group not found
    major: Symbol table
    minor: Object not found
  #005: ../../src/H5Gloc.c line 442 in H5G_loc_find(): can't find object
    major: Symbol table
    minor: Object not found
  #006: ../../src/H5Gtraverse.c line 837 in H5G_traverse(): internal path traversal failed
    major: Symbol table
    minor: Object not found
  #007: ../../src/H5Gtraverse.c line 613 in H5G__traverse_real(): traversal operator failed
    major: Symbol table
    minor: Callback failed
  #008: ../../src/H5Gloc.c line 399 in H5G__loc_find_cb(): object 'foobar' doesn't exist
    major: Symbol table
    minor: Object not found
ok
test_get_population (test.TestSpikePopulation.test_get_population) ... ok
test_get_spikes_from_population (test.TestSpikePopulation.test_get_spikes_from_population) ... ok
----------------------------------------------------------------------
Ran 60 tests in 0.172s
OK
~/build/BUILD/libsonata-0.1.11
+ popd
+ RPM_EC=0
++ jobs -p
Processing files: libsonata-0.1.11-8.fc38.x86_64
+ exit 0
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.QAH9Ux
+ umask 022
+ cd /builddir/build/BUILD
+ cd libsonata-0.1.11
+ DOCDIR=/builddir/build/BUILDROOT/libsonata-0.1.11-8.fc38.x86_64/usr/share/doc/libsonata
+ export LC_ALL=C
+ LC_ALL=C
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/libsonata-0.1.11-8.fc38.x86_64/usr/share/doc/libsonata
+ cp -pr README.rst /builddir/build/BUILDROOT/libsonata-0.1.11-8.fc38.x86_64/usr/share/doc/libsonata
+ cp -pr CHANGELOG.md /builddir/build/BUILDROOT/libsonata-0.1.11-8.fc38.x86_64/usr/share/doc/libsonata
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.5vuv1g
+ umask 022
+ cd /builddir/build/BUILD
+ cd libsonata-0.1.11
+ LICENSEDIR=/builddir/build/BUILDROOT/libsonata-0.1.11-8.fc38.x86_64/usr/share/licenses/libsonata
+ export LC_ALL=C
+ LC_ALL=C
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/libsonata-0.1.11-8.fc38.x86_64/usr/share/licenses/libsonata
+ cp -pr COPYING.LESSER /builddir/build/BUILDROOT/libsonata-0.1.11-8.fc38.x86_64/usr/share/licenses/libsonata
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: libsonata = 0.1.11-8.fc38 libsonata(x86-64) = 0.1.11-8.fc38 libsonata.so.0.1()(64bit)
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.4)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libhdf5.so.200()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.5)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) rtld(GNU_HASH)
Processing files: libsonata-devel-0.1.11-8.fc38.x86_64
Provides: libsonata-devel = 0.1.11-8.fc38 libsonata-devel(x86-64) = 0.1.11-8.fc38
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: libsonata.so.0.1()(64bit)
Processing files: python3-libsonata-0.1.11-8.fc38.x86_64
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.ZevYvy
+ umask 022
+ cd /builddir/build/BUILD
+ cd libsonata-0.1.11
+ DOCDIR=/builddir/build/BUILDROOT/libsonata-0.1.11-8.fc38.x86_64/usr/share/doc/python3-libsonata
+ export LC_ALL=C
+ LC_ALL=C
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/libsonata-0.1.11-8.fc38.x86_64/usr/share/doc/python3-libsonata
+ cp -pr README.rst /builddir/build/BUILDROOT/libsonata-0.1.11-8.fc38.x86_64/usr/share/doc/python3-libsonata
+ cp -pr CHANGELOG.md /builddir/build/BUILDROOT/libsonata-0.1.11-8.fc38.x86_64/usr/share/doc/python3-libsonata
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: python-libsonata = 0.1.11-8.fc38 python3-libsonata = 0.1.11-8.fc38 python3-libsonata(x86-64) = 0.1.11-8.fc38 python3.11-libsonata = 0.1.11-8.fc38 python3.11dist(libsonata) = 0.1.11 python3dist(libsonata) = 0.1.11
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: ld-linux-x86-64.so.2()(64bit) ld-linux-x86-64.so.2(GLIBC_2.3)(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.4)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libhdf5.so.200()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.11)(64bit) libstdc++.so.6(CXXABI_1.3.13)(64bit) libstdc++.so.6(CXXABI_1.3.2)(64bit) libstdc++.so.6(CXXABI_1.3.3)(64bit) libstdc++.so.6(CXXABI_1.3.5)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) python(abi) = 3.11 python3.11dist(numpy) >= 1.14.5 rtld(GNU_HASH)
Processing files: libsonata-debugsource-0.1.11-8.fc38.x86_64
Provides: libsonata-debugsource = 0.1.11-8.fc38 libsonata-debugsource(x86-64) = 0.1.11-8.fc38
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: libsonata-debuginfo-0.1.11-8.fc38.x86_64
Provides: debuginfo(build-id) = 06f5889cec85eb8e0ede3cdef1d690aec8b1b2cf libsonata-debuginfo = 0.1.11-8.fc38 libsonata-debuginfo(x86-64) = 0.1.11-8.fc38 libsonata.so.0.1.11-0.1.11-8.fc38.x86_64.debug()(64bit)
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: libsonata-debugsource(x86-64) = 0.1.11-8.fc38
Processing files: python3-libsonata-debuginfo-0.1.11-8.fc38.x86_64
Provides: debuginfo(build-id) = d15e5c0e2015baecd5eddf81b78d0d88c3383115 python-libsonata-debuginfo = 0.1.11-8.fc38 python3-libsonata-debuginfo = 0.1.11-8.fc38 python3-libsonata-debuginfo(x86-64) = 0.1.11-8.fc38 python3.11-libsonata-debuginfo = 0.1.11-8.fc38
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: libsonata-debugsource(x86-64) = 0.1.11-8.fc38
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/libsonata-0.1.11-8.fc38.x86_64
Wrote: /builddir/build/RPMS/libsonata-debuginfo-0.1.11-8.fc38.x86_64.rpm
Wrote: /builddir/build/RPMS/python3-libsonata-0.1.11-8.fc38.x86_64.rpm
Wrote: /builddir/build/RPMS/libsonata-0.1.11-8.fc38.x86_64.rpm
Wrote: /builddir/build/RPMS/libsonata-debugsource-0.1.11-8.fc38.x86_64.rpm
Wrote: /builddir/build/RPMS/libsonata-devel-0.1.11-8.fc38.x86_64.rpm
Wrote: /builddir/build/RPMS/python3-libsonata-debuginfo-0.1.11-8.fc38.x86_64.rpm
Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.aiHRWe
+ umask 022
+ cd /builddir/build/BUILD
+ cd libsonata-0.1.11
+ /usr/bin/rm -rf /builddir/build/BUILDROOT/libsonata-0.1.11-8.fc38.x86_64
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.U9PLmc
+ umask 022
+ cd /builddir/build/BUILD
+ rm -rf libsonata-0.1.11 libsonata-0.1.11.gemspec
+ RPM_EC=0
++ jobs -p
+ exit 0
Child return code was: 0