Warning: Permanently added '2620:52:3:1:dead:beef:cafe:c11b' (ED25519) to the list of known hosts. Running: /usr/bin/copr-rpmbuild --verbose --drop-resultdir --build-id 4803235 --chroot fedora-rawhide-x86_64 --detached Version: 0.61 PID: 9058 Logging PID: 9059 Task: {'appstream': False, 'background': True, 'build_id': 4803235, 'buildroot_pkgs': [], 'chroot': 'fedora-rawhide-x86_64', 'enable_net': True, 'fedora_review': False, 'git_hash': 'dfde73b06cb8d6b07df542e22750bdfb5132ca54', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/thrnciar/mpb.73/smoldyn', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'smoldyn', 'package_version': '2.67.3-3', 'project_dirname': 'mpb.73', 'project_name': 'mpb.73', 'project_owner': 'thrnciar', 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/thrnciar/mpb.73/fedora-rawhide-x86_64/', 'id': 'copr_base', 'name': 'Copr repository'}], 'sandbox': 'thrnciar/mpb.73--thrnciar', 'source_json': {}, 'source_type': None, 'submitter': 'thrnciar', 'tags': [], 'task_id': '4803235-fedora-rawhide-x86_64', 'timeout': 108000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/thrnciar/mpb.73/smoldyn /var/lib/copr-rpmbuild/workspace/workdir-1srwxtv5/smoldyn --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/thrnciar/mpb.73/smoldyn', '/var/lib/copr-rpmbuild/workspace/workdir-1srwxtv5/smoldyn', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-1srwxtv5/smoldyn'... Running: git checkout dfde73b06cb8d6b07df542e22750bdfb5132ca54 cmd: ['git', 'checkout', 'dfde73b06cb8d6b07df542e22750bdfb5132ca54'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-1srwxtv5/smoldyn rc: 0 stdout: stderr: Note: switching to 'dfde73b06cb8d6b07df542e22750bdfb5132ca54'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at dfde73b automatic import of smoldyn Running: copr-distgit-client sources cmd: ['copr-distgit-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-1srwxtv5/smoldyn rc: 0 stdout: /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading Smoldyn-2.67.3.tar.gz INFO: Calling: curl -H Pragma: -o Smoldyn-2.67.3.tar.gz --location --remote-time --show-error --fail https://copr-dist-git.fedorainfracloud.org/repo/pkgs/thrnciar/mpb.73/smoldyn/Smoldyn-2.67.3.tar.gz/md5/061227e5683e484b0dd465d378e5390b/Smoldyn-2.67.3.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 92.0M 100 92.0M 0 0 12.1M 0 0:00:07 0:00:07 --:--:-- 13.2M INFO: Reading stdout from command: md5sum Smoldyn-2.67.3.tar.gz Running (timeout=108000): unbuffer mock --buildsrpm --spec /var/lib/copr-rpmbuild/workspace/workdir-1srwxtv5/smoldyn/smoldyn.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-1srwxtv5/smoldyn --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1662051019.772805 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 3.1 starting (python version = 3.10.4, NVR = mock-3.1-1.fc35)... Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-1srwxtv5/smoldyn/smoldyn.spec) Config(fedora-rawhide-x86_64) Start: clean chroot Finish: clean chroot Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1662051019.772805/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 3.1 INFO: Mock Version: 3.1 Start(bootstrap): dnf install No matches found for the following disable plugin patterns: local, spacewalk, versionlock Updating Subscription Management repositories. Unable to read consumer identity This system is not registered with an entitlement server. You can use subscription-manager to register. Copr repository 26 MB/s | 4.6 MB 00:00 fedora 16 MB/s | 65 MB 00:04 Last metadata expiration check: 0:00:01 ago on Thu Sep 1 16:50:24 2022. Dependencies resolved. ================================================================================ Package Arch Version Repo Size ================================================================================ Installing: dnf noarch 4.13.0-3.fc37 fedora 464 k dnf-plugins-core noarch 4.2.1-3.fc37 fedora 34 k Installing dependencies: alternatives x86_64 1.19-3.fc37 fedora 36 k audit-libs x86_64 3.0.9-1.fc38 fedora 116 k basesystem noarch 11-14.fc37 fedora 7.0 k bash x86_64 5.1.16-3.fc37 fedora 1.7 M bzip2-libs x86_64 1.0.8-12.fc37 fedora 41 k ca-certificates noarch 2022.2.54-5.fc37 fedora 829 k coreutils x86_64 9.1-7.fc38 fedora 1.1 M coreutils-common x86_64 9.1-7.fc38 fedora 2.0 M crypto-policies noarch 20220824-2.git2187e9c.fc38 fedora 86 k curl x86_64 7.84.0-3.fc38 fedora 312 k cyrus-sasl-lib x86_64 2.1.28-8.fc38 fedora 792 k dbus-libs x86_64 1:1.14.0-5.fc38 fedora 156 k dnf-data noarch 4.13.0-3.fc37 fedora 42 k elfutils-default-yama-scope noarch 0.187-8.fc38 fedora 16 k elfutils-libelf x86_64 0.187-8.fc38 fedora 197 k elfutils-libs x86_64 0.187-8.fc38 fedora 257 k expat x86_64 2.4.8-2.fc37 fedora 110 k fedora-gpg-keys noarch 38-0.3 fedora 125 k fedora-release noarch 38-0.3 fedora 11 k fedora-release-common noarch 38-0.3 fedora 22 k fedora-release-identity-basic noarch 38-0.3 fedora 12 k fedora-repos noarch 38-0.3 fedora 10 k fedora-repos-rawhide noarch 38-0.3 fedora 9.7 k file-libs x86_64 5.42-4.fc38 copr_base 676 k filesystem x86_64 3.18-2.fc37 fedora 1.1 M findutils x86_64 1:4.9.0-2.fc37 fedora 492 k gawk x86_64 5.1.1-4.fc37 fedora 1.0 M gdbm-libs x86_64 1:1.23-2.fc37 fedora 56 k glib2 x86_64 2.73.3-2.fc38 fedora 2.7 M glibc x86_64 2.36.9000-2.fc38 fedora 2.1 M glibc-common x86_64 2.36.9000-2.fc38 fedora 288 k glibc-minimal-langpack x86_64 2.36.9000-2.fc38 fedora 10 k gmp x86_64 1:6.2.1-3.fc37 fedora 315 k gnupg2 x86_64 2.3.7-3.fc37 fedora 2.5 M gnutls x86_64 3.7.7-1.fc37 fedora 1.1 M gpgme x86_64 1.17.0-4.fc37 fedora 210 k grep x86_64 3.7-4.fc37 fedora 273 k ima-evm-utils x86_64 1.4-6.fc37 fedora 63 k json-c x86_64 0.16-2.fc37 fedora 41 k keyutils-libs x86_64 1.6.1-5.fc37 fedora 31 k krb5-libs x86_64 1.19.2-11.fc37.1 fedora 727 k libacl x86_64 2.3.1-4.fc37 fedora 23 k libarchive x86_64 3.6.1-2.fc37 fedora 397 k libassuan x86_64 2.5.5-5.fc37 fedora 67 k libattr x86_64 2.5.1-5.fc37 fedora 18 k libb2 x86_64 0.98.1-7.fc37 fedora 25 k libblkid x86_64 2.38.1-2.fc38 fedora 107 k libbrotli x86_64 1.0.9-9.fc38 copr_base 316 k libcap x86_64 2.48-5.fc37 fedora 67 k libcap-ng x86_64 0.8.3-3.fc37 fedora 33 k libcom_err x86_64 1.46.5-3.fc37 fedora 25 k libcomps x86_64 0.1.18-4.fc37 fedora 76 k libcurl x86_64 7.84.0-3.fc38 fedora 306 k libdnf x86_64 0.68.0-1.fc38 fedora 673 k libevent x86_64 2.1.12-7.fc37 fedora 261 k libffi x86_64 3.4.2-9.fc37 fedora 37 k libfsverity x86_64 1.4-8.fc37 fedora 19 k libgcc x86_64 12.2.1-1.fc38 fedora 106 k libgcrypt x86_64 1.10.1-4.fc37 fedora 512 k libgomp x86_64 12.2.1-1.fc38 fedora 293 k libgpg-error x86_64 1.45-2.fc37 fedora 227 k libidn2 x86_64 2.3.3-2.fc37 fedora 113 k libksba x86_64 1.6.0-4.fc37 fedora 157 k libmodulemd x86_64 2.14.0-4.fc37 fedora 234 k libmount x86_64 2.38.1-2.fc38 fedora 135 k libnghttp2 x86_64 1.49.0-1.fc38 fedora 74 k libnsl2 x86_64 2.0.0-4.fc37 fedora 30 k libpsl x86_64 0.21.1-6.fc37 fedora 63 k librepo x86_64 1.14.4-1.fc38 fedora 94 k libreport-filesystem noarch 2.17.2-1.fc38 fedora 13 k libselinux x86_64 3.4-5.fc37 fedora 86 k libsemanage x86_64 3.4-5.fc37 fedora 120 k libsepol x86_64 3.4-3.fc37 fedora 322 k libsigsegv x86_64 2.14-3.fc37 fedora 27 k libsmartcols x86_64 2.38.1-2.fc38 fedora 64 k libsolv x86_64 0.7.22-3.fc37 fedora 405 k libssh x86_64 0.9.6-5.fc37 fedora 203 k libssh-config noarch 0.9.6-5.fc37 fedora 7.8 k libstdc++ x86_64 12.2.1-1.fc38 fedora 799 k libtasn1 x86_64 4.18.0-3.fc37 fedora 75 k libtirpc x86_64 1.3.3-0.fc37 fedora 93 k libunistring x86_64 1.0-2.fc37 fedora 549 k libuuid x86_64 2.38.1-2.fc38 fedora 28 k libverto x86_64 0.3.2-4.fc37 fedora 21 k libxcrypt x86_64 4.4.28-3.fc38 fedora 117 k libxml2 x86_64 2.9.14-3.fc37 fedora 752 k libyaml x86_64 0.2.5-8.fc37 fedora 60 k libzstd x86_64 1.5.2-3.fc37 fedora 294 k lua-libs x86_64 5.4.4-4.fc37 fedora 217 k lz4-libs x86_64 1.9.3-5.fc37 fedora 70 k mpdecimal x86_64 2.5.1-4.fc37 fedora 102 k mpfr x86_64 4.1.0-10.fc37 fedora 331 k ncurses-base noarch 6.3-3.20220501.fc37 fedora 86 k ncurses-libs x86_64 6.3-3.20220501.fc37 fedora 329 k nettle x86_64 3.8-2.fc37 fedora 414 k npth x86_64 1.6-9.fc37 fedora 24 k openldap x86_64 2.6.3-1.fc38 fedora 254 k openssl-libs x86_64 1:3.0.5-2.fc37 fedora 2.1 M p11-kit x86_64 0.24.1-3.fc37 fedora 376 k p11-kit-trust x86_64 0.24.1-3.fc37 fedora 138 k pcre x86_64 8.45-1.fc37.2 fedora 202 k pcre2 x86_64 10.40-1.fc37.1 fedora 236 k pcre2-syntax noarch 10.40-1.fc37.1 fedora 142 k popt x86_64 1.19~rc1-4.fc38 fedora 65 k publicsuffix-list-dafsa noarch 20210518-5.fc37 fedora 58 k python-pip-wheel noarch 22.2.2-1.fc38 copr_base 1.4 M python-setuptools-wheel noarch 65.3.0-1.fc38 copr_base 715 k python3 x86_64 3.11.0~rc1-2.fc38 fedora 27 k python3-dateutil noarch 1:2.8.2-4.fc38 copr_base 350 k python3-dbus x86_64 1.2.18-5.fc37 fedora 156 k python3-distro noarch 1.7.0-3.fc37 fedora 48 k python3-dnf noarch 4.13.0-3.fc37 fedora 605 k python3-dnf-plugins-core noarch 4.2.1-3.fc37 fedora 268 k python3-gpg x86_64 1.17.0-4.fc37 fedora 298 k python3-hawkey x86_64 0.68.0-1.fc38 fedora 108 k python3-libcomps x86_64 0.1.18-4.fc37 fedora 48 k python3-libdnf x86_64 0.68.0-1.fc38 fedora 818 k python3-libs x86_64 3.11.0~rc1-2.fc38 fedora 9.6 M python3-rpm x86_64 4.18.0-0.beta1.4.fc37 fedora 93 k python3-six noarch 1.16.0-8.fc37 fedora 42 k readline x86_64 8.1-7.fc37 fedora 211 k rpm x86_64 4.18.0-0.beta1.4.fc37 fedora 570 k rpm-build-libs x86_64 4.18.0-0.beta1.4.fc37 fedora 93 k rpm-libs x86_64 4.18.0-0.beta1.4.fc37 fedora 319 k rpm-sign-libs x86_64 4.18.0-0.beta1.4.fc37 fedora 26 k sed x86_64 4.8-11.fc37 fedora 306 k setup noarch 2.14.1-2.fc37 fedora 149 k shadow-utils x86_64 2:4.12.3-1.fc38 fedora 1.3 M sqlite-libs x86_64 3.39.2-2.fc37 fedora 657 k systemd-libs x86_64 251.4-53.fc38 fedora 620 k tpm2-tss x86_64 3.2.0-3.fc37 fedora 600 k tzdata noarch 2022c-1.fc38 fedora 717 k xz-libs x86_64 5.2.5-10.fc37 fedora 92 k zchunk-libs x86_64 1.2.2-2.fc37 fedora 51 k zlib x86_64 1.2.12-5.fc38 fedora 94 k Transaction Summary ================================================================================ Install 137 Packages Total download size: 56 M Installed size: 195 M Downloading Packages: (1/137): libbrotli-1.0.9-9.fc38.x86_64.rpm 3.1 MB/s | 316 kB 00:00 (2/137): file-libs-5.42-4.fc38.x86_64.rpm 6.4 MB/s | 676 kB 00:00 (3/137): python-pip-wheel-22.2.2-1.fc38.noarch. 9.7 MB/s | 1.4 MB 00:00 (4/137): python-setuptools-wheel-65.3.0-1.fc38. 15 MB/s | 715 kB 00:00 (5/137): python3-dateutil-2.8.2-4.fc38.noarch.r 7.5 MB/s | 350 kB 00:00 (6/137): basesystem-11-14.fc37.noarch.rpm 210 kB/s | 7.0 kB 00:00 (7/137): alternatives-1.19-3.fc37.x86_64.rpm 704 kB/s | 36 kB 00:00 (8/137): bzip2-libs-1.0.8-12.fc37.x86_64.rpm 1.8 MB/s | 41 kB 00:00 (9/137): audit-libs-3.0.9-1.fc38.x86_64.rpm 1.4 MB/s | 116 kB 00:00 (10/137): ca-certificates-2022.2.54-5.fc37.noar 8.0 MB/s | 829 kB 00:00 (11/137): coreutils-9.1-7.fc38.x86_64.rpm 11 MB/s | 1.1 MB 00:00 (12/137): bash-5.1.16-3.fc37.x86_64.rpm 11 MB/s | 1.7 MB 00:00 (13/137): crypto-policies-20220824-2.git2187e9c 4.4 MB/s | 86 kB 00:00 (14/137): curl-7.84.0-3.fc38.x86_64.rpm 12 MB/s | 312 kB 00:00 (15/137): dbus-libs-1.14.0-5.fc38.x86_64.rpm 7.5 MB/s | 156 kB 00:00 (16/137): cyrus-sasl-lib-2.1.28-8.fc38.x86_64.r 13 MB/s | 792 kB 00:00 (17/137): dnf-4.13.0-3.fc37.noarch.rpm 13 MB/s | 464 kB 00:00 (18/137): dnf-data-4.13.0-3.fc37.noarch.rpm 2.2 MB/s | 42 kB 00:00 (19/137): dnf-plugins-core-4.2.1-3.fc37.noarch. 1.8 MB/s | 34 kB 00:00 (20/137): elfutils-default-yama-scope-0.187-8.f 931 kB/s | 16 kB 00:00 (21/137): coreutils-common-9.1-7.fc38.x86_64.rp 15 MB/s | 2.0 MB 00:00 (22/137): elfutils-libelf-0.187-8.fc38.x86_64.r 8.8 MB/s | 197 kB 00:00 (23/137): elfutils-libs-0.187-8.fc38.x86_64.rpm 11 MB/s | 257 kB 00:00 (24/137): expat-2.4.8-2.fc37.x86_64.rpm 4.7 MB/s | 110 kB 00:00 (25/137): fedora-gpg-keys-38-0.3.noarch.rpm 5.4 MB/s | 125 kB 00:00 (26/137): fedora-release-38-0.3.noarch.rpm 632 kB/s | 11 kB 00:00 (27/137): fedora-release-common-38-0.3.noarch.r 1.2 MB/s | 22 kB 00:00 (28/137): fedora-release-identity-basic-38-0.3. 692 kB/s | 12 kB 00:00 (29/137): fedora-repos-38-0.3.noarch.rpm 587 kB/s | 10 kB 00:00 (30/137): fedora-repos-rawhide-38-0.3.noarch.rp 564 kB/s | 9.7 kB 00:00 (31/137): findutils-4.9.0-2.fc37.x86_64.rpm 13 MB/s | 492 kB 00:00 (32/137): gdbm-libs-1.23-2.fc37.x86_64.rpm 2.9 MB/s | 56 kB 00:00 (33/137): filesystem-3.18-2.fc37.x86_64.rpm 13 MB/s | 1.1 MB 00:00 (34/137): gawk-5.1.1-4.fc37.x86_64.rpm 12 MB/s | 1.0 MB 00:00 [MIRROR] glibc-2.36.9000-2.fc38.x86_64.rpm: Status code: 404 for http://mirror.atl.genesisadaptive.com/fedora/linux/development/rawhide/Everything/x86_64/os/Packages/g/glibc-2.36.9000-2.fc38.x86_64.rpm (IP: 2605:1080:1:f00::70) [MIRROR] glibc-common-2.36.9000-2.fc38.x86_64.rpm: Status code: 404 for http://mirror.atl.genesisadaptive.com/fedora/linux/development/rawhide/Everything/x86_64/os/Packages/g/glibc-common-2.36.9000-2.fc38.x86_64.rpm (IP: 2605:1080:1:f00::70) [MIRROR] glibc-2.36.9000-2.fc38.x86_64.rpm: Status code: 404 for https://mirror.atl.genesisadaptive.com/fedora/linux/development/rawhide/Everything/x86_64/os/Packages/g/glibc-2.36.9000-2.fc38.x86_64.rpm (IP: 2605:1080:1:f00::70) [MIRROR] glibc-common-2.36.9000-2.fc38.x86_64.rpm: Status code: 404 for https://mirror.atl.genesisadaptive.com/fedora/linux/development/rawhide/Everything/x86_64/os/Packages/g/glibc-common-2.36.9000-2.fc38.x86_64.rpm (IP: 2605:1080:1:f00::70) (35/137): glib2-2.73.3-2.fc38.x86_64.rpm 23 MB/s | 2.7 MB 00:00 [MIRROR] glibc-minimal-langpack-2.36.9000-2.fc38.x86_64.rpm: Status code: 404 for https://mirror.atl.genesisadaptive.com/fedora/linux/development/rawhide/Everything/x86_64/os/Packages/g/glibc-minimal-langpack-2.36.9000-2.fc38.x86_64.rpm (IP: 2605:1080:1:f00::70) [MIRROR] glibc-minimal-langpack-2.36.9000-2.fc38.x86_64.rpm: Status code: 404 for http://mirror.atl.genesisadaptive.com/fedora/linux/development/rawhide/Everything/x86_64/os/Packages/g/glibc-minimal-langpack-2.36.9000-2.fc38.x86_64.rpm (IP: 2605:1080:1:f00::70) (36/137): glibc-minimal-langpack-2.36.9000-2.fc 139 kB/s | 10 kB 00:00 (37/137): glibc-common-2.36.9000-2.fc38.x86_64. 1.5 MB/s | 288 kB 00:00 (38/137): gmp-6.2.1-3.fc37.x86_64.rpm 7.8 MB/s | 315 kB 00:00 (39/137): glibc-2.36.9000-2.fc38.x86_64.rpm 7.9 MB/s | 2.1 MB 00:00 (40/137): gpgme-1.17.0-4.fc37.x86_64.rpm 9.2 MB/s | 210 kB 00:00 (41/137): grep-3.7-4.fc37.x86_64.rpm 11 MB/s | 273 kB 00:00 (42/137): gnutls-3.7.7-1.fc37.x86_64.rpm 9.1 MB/s | 1.1 MB 00:00 (43/137): 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MB/s | 9.6 MB 00:00 -------------------------------------------------------------------------------- Total 26 MB/s | 56 MB 00:02 fedora 1.6 MB/s | 1.6 kB 00:00 Importing GPG key 0xEB10B464: Userid : "Fedora (38) " Fingerprint: 6A51 BBAB BA3D 5467 B617 1221 809A 8D7C EB10 B464 From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-38-primary Key imported successfully fedora 1.6 MB/s | 1.6 kB 00:00 GPG key at file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-38-primary (0xEB10B464) is already installed fedora 1.6 MB/s | 1.6 kB 00:00 Importing GPG key 0x5323552A: Userid : "Fedora (37) " Fingerprint: ACB5 EE4E 831C 74BB 7C16 8D27 F55A D3FB 5323 552A From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-37-primary Key imported successfully Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. 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tpm2-tss-3.2.0-3.fc37.x86_64 119/137 Installing : ima-evm-utils-1.4-6.fc37.x86_64 120/137 Installing : rpm-sign-libs-4.18.0-0.beta1.4.fc37.x86_64 121/137 Installing : python-setuptools-wheel-65.3.0-1.fc38.noarch 122/137 Installing : python3-3.11.0~rc1-2.fc38.x86_64 123/137 Installing : python3-libs-3.11.0~rc1-2.fc38.x86_64 124/137 Installing : python3-libdnf-0.68.0-1.fc38.x86_64 125/137 Installing : python3-hawkey-0.68.0-1.fc38.x86_64 126/137 Installing : python3-dbus-1.2.18-5.fc37.x86_64 127/137 Installing : python3-libcomps-0.1.18-4.fc37.x86_64 128/137 Installing : python3-distro-1.7.0-3.fc37.noarch 129/137 Installing : python3-gpg-1.17.0-4.fc37.x86_64 130/137 Installing : python3-rpm-4.18.0-0.beta1.4.fc37.x86_64 131/137 Installing : python3-dnf-4.13.0-3.fc37.noarch 132/137 Installing : python3-six-1.16.0-8.fc37.noarch 133/137 Installing : python3-dateutil-1:2.8.2-4.fc38.noarch 134/137 Installing : python3-dnf-plugins-core-4.2.1-3.fc37.noarch 135/137 Installing : dnf-plugins-core-4.2.1-3.fc37.noarch 136/137 Installing : dnf-4.13.0-3.fc37.noarch 137/137 Running scriptlet: dnf-4.13.0-3.fc37.noarch 137/137 Running scriptlet: filesystem-3.18-2.fc37.x86_64 137/137 Running scriptlet: ca-certificates-2022.2.54-5.fc37.noarch 137/137 Running scriptlet: rpm-4.18.0-0.beta1.4.fc37.x86_64 137/137 Running scriptlet: dnf-4.13.0-3.fc37.noarch 137/137 Verifying : file-libs-5.42-4.fc38.x86_64 1/137 Verifying : libbrotli-1.0.9-9.fc38.x86_64 2/137 Verifying : python-pip-wheel-22.2.2-1.fc38.noarch 3/137 Verifying : python-setuptools-wheel-65.3.0-1.fc38.noarch 4/137 Verifying : python3-dateutil-1:2.8.2-4.fc38.noarch 5/137 Verifying : alternatives-1.19-3.fc37.x86_64 6/137 Verifying : audit-libs-3.0.9-1.fc38.x86_64 7/137 Verifying : basesystem-11-14.fc37.noarch 8/137 Verifying : bash-5.1.16-3.fc37.x86_64 9/137 Verifying : bzip2-libs-1.0.8-12.fc37.x86_64 10/137 Verifying : ca-certificates-2022.2.54-5.fc37.noarch 11/137 Verifying : coreutils-9.1-7.fc38.x86_64 12/137 Verifying : coreutils-common-9.1-7.fc38.x86_64 13/137 Verifying : crypto-policies-20220824-2.git2187e9c.fc38.noarc 14/137 Verifying : curl-7.84.0-3.fc38.x86_64 15/137 Verifying : cyrus-sasl-lib-2.1.28-8.fc38.x86_64 16/137 Verifying : dbus-libs-1:1.14.0-5.fc38.x86_64 17/137 Verifying : dnf-4.13.0-3.fc37.noarch 18/137 Verifying : dnf-data-4.13.0-3.fc37.noarch 19/137 Verifying : dnf-plugins-core-4.2.1-3.fc37.noarch 20/137 Verifying : elfutils-default-yama-scope-0.187-8.fc38.noarch 21/137 Verifying : elfutils-libelf-0.187-8.fc38.x86_64 22/137 Verifying : elfutils-libs-0.187-8.fc38.x86_64 23/137 Verifying : expat-2.4.8-2.fc37.x86_64 24/137 Verifying : fedora-gpg-keys-38-0.3.noarch 25/137 Verifying : fedora-release-38-0.3.noarch 26/137 Verifying : fedora-release-common-38-0.3.noarch 27/137 Verifying : fedora-release-identity-basic-38-0.3.noarch 28/137 Verifying : fedora-repos-38-0.3.noarch 29/137 Verifying : fedora-repos-rawhide-38-0.3.noarch 30/137 Verifying : filesystem-3.18-2.fc37.x86_64 31/137 Verifying : findutils-1:4.9.0-2.fc37.x86_64 32/137 Verifying : gawk-5.1.1-4.fc37.x86_64 33/137 Verifying : gdbm-libs-1:1.23-2.fc37.x86_64 34/137 Verifying : glib2-2.73.3-2.fc38.x86_64 35/137 Verifying : glibc-2.36.9000-2.fc38.x86_64 36/137 Verifying : glibc-common-2.36.9000-2.fc38.x86_64 37/137 Verifying : glibc-minimal-langpack-2.36.9000-2.fc38.x86_64 38/137 Verifying : gmp-1:6.2.1-3.fc37.x86_64 39/137 Verifying : gnupg2-2.3.7-3.fc37.x86_64 40/137 Verifying : gnutls-3.7.7-1.fc37.x86_64 41/137 Verifying : gpgme-1.17.0-4.fc37.x86_64 42/137 Verifying : grep-3.7-4.fc37.x86_64 43/137 Verifying : ima-evm-utils-1.4-6.fc37.x86_64 44/137 Verifying : json-c-0.16-2.fc37.x86_64 45/137 Verifying : keyutils-libs-1.6.1-5.fc37.x86_64 46/137 Verifying : krb5-libs-1.19.2-11.fc37.1.x86_64 47/137 Verifying : libacl-2.3.1-4.fc37.x86_64 48/137 Verifying : libarchive-3.6.1-2.fc37.x86_64 49/137 Verifying : libassuan-2.5.5-5.fc37.x86_64 50/137 Verifying : libattr-2.5.1-5.fc37.x86_64 51/137 Verifying : 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72/137 Verifying : libpsl-0.21.1-6.fc37.x86_64 73/137 Verifying : librepo-1.14.4-1.fc38.x86_64 74/137 Verifying : libreport-filesystem-2.17.2-1.fc38.noarch 75/137 Verifying : libselinux-3.4-5.fc37.x86_64 76/137 Verifying : libsemanage-3.4-5.fc37.x86_64 77/137 Verifying : libsepol-3.4-3.fc37.x86_64 78/137 Verifying : libsigsegv-2.14-3.fc37.x86_64 79/137 Verifying : libsmartcols-2.38.1-2.fc38.x86_64 80/137 Verifying : libsolv-0.7.22-3.fc37.x86_64 81/137 Verifying : libssh-0.9.6-5.fc37.x86_64 82/137 Verifying : libssh-config-0.9.6-5.fc37.noarch 83/137 Verifying : libstdc++-12.2.1-1.fc38.x86_64 84/137 Verifying : libtasn1-4.18.0-3.fc37.x86_64 85/137 Verifying : libtirpc-1.3.3-0.fc37.x86_64 86/137 Verifying : libunistring-1.0-2.fc37.x86_64 87/137 Verifying : libuuid-2.38.1-2.fc38.x86_64 88/137 Verifying : libverto-0.3.2-4.fc37.x86_64 89/137 Verifying : libxcrypt-4.4.28-3.fc38.x86_64 90/137 Verifying : libxml2-2.9.14-3.fc37.x86_64 91/137 Verifying : libyaml-0.2.5-8.fc37.x86_64 92/137 Verifying : libzstd-1.5.2-3.fc37.x86_64 93/137 Verifying : lua-libs-5.4.4-4.fc37.x86_64 94/137 Verifying : lz4-libs-1.9.3-5.fc37.x86_64 95/137 Verifying : mpdecimal-2.5.1-4.fc37.x86_64 96/137 Verifying : mpfr-4.1.0-10.fc37.x86_64 97/137 Verifying : ncurses-base-6.3-3.20220501.fc37.noarch 98/137 Verifying : ncurses-libs-6.3-3.20220501.fc37.x86_64 99/137 Verifying : nettle-3.8-2.fc37.x86_64 100/137 Verifying : npth-1.6-9.fc37.x86_64 101/137 Verifying : openldap-2.6.3-1.fc38.x86_64 102/137 Verifying : openssl-libs-1:3.0.5-2.fc37.x86_64 103/137 Verifying : p11-kit-0.24.1-3.fc37.x86_64 104/137 Verifying : p11-kit-trust-0.24.1-3.fc37.x86_64 105/137 Verifying : pcre-8.45-1.fc37.2.x86_64 106/137 Verifying : pcre2-10.40-1.fc37.1.x86_64 107/137 Verifying : pcre2-syntax-10.40-1.fc37.1.noarch 108/137 Verifying : popt-1.19~rc1-4.fc38.x86_64 109/137 Verifying : publicsuffix-list-dafsa-20210518-5.fc37.noarch 110/137 Verifying : python3-3.11.0~rc1-2.fc38.x86_64 111/137 Verifying : python3-dbus-1.2.18-5.fc37.x86_64 112/137 Verifying : python3-distro-1.7.0-3.fc37.noarch 113/137 Verifying : python3-dnf-4.13.0-3.fc37.noarch 114/137 Verifying : python3-dnf-plugins-core-4.2.1-3.fc37.noarch 115/137 Verifying : python3-gpg-1.17.0-4.fc37.x86_64 116/137 Verifying : python3-hawkey-0.68.0-1.fc38.x86_64 117/137 Verifying : python3-libcomps-0.1.18-4.fc37.x86_64 118/137 Verifying : python3-libdnf-0.68.0-1.fc38.x86_64 119/137 Verifying : python3-libs-3.11.0~rc1-2.fc38.x86_64 120/137 Verifying : python3-rpm-4.18.0-0.beta1.4.fc37.x86_64 121/137 Verifying : python3-six-1.16.0-8.fc37.noarch 122/137 Verifying : readline-8.1-7.fc37.x86_64 123/137 Verifying : rpm-4.18.0-0.beta1.4.fc37.x86_64 124/137 Verifying : rpm-build-libs-4.18.0-0.beta1.4.fc37.x86_64 125/137 Verifying : rpm-libs-4.18.0-0.beta1.4.fc37.x86_64 126/137 Verifying : rpm-sign-libs-4.18.0-0.beta1.4.fc37.x86_64 127/137 Verifying : sed-4.8-11.fc37.x86_64 128/137 Verifying : setup-2.14.1-2.fc37.noarch 129/137 Verifying : shadow-utils-2:4.12.3-1.fc38.x86_64 130/137 Verifying : sqlite-libs-3.39.2-2.fc37.x86_64 131/137 Verifying : systemd-libs-251.4-53.fc38.x86_64 132/137 Verifying : tpm2-tss-3.2.0-3.fc37.x86_64 133/137 Verifying : tzdata-2022c-1.fc38.noarch 134/137 Verifying : xz-libs-5.2.5-10.fc37.x86_64 135/137 Verifying : zchunk-libs-1.2.2-2.fc37.x86_64 136/137 Verifying : zlib-1.2.12-5.fc38.x86_64 137/137 Installed products updated. Installed: alternatives-1.19-3.fc37.x86_64 audit-libs-3.0.9-1.fc38.x86_64 basesystem-11-14.fc37.noarch bash-5.1.16-3.fc37.x86_64 bzip2-libs-1.0.8-12.fc37.x86_64 ca-certificates-2022.2.54-5.fc37.noarch coreutils-9.1-7.fc38.x86_64 coreutils-common-9.1-7.fc38.x86_64 crypto-policies-20220824-2.git2187e9c.fc38.noarch curl-7.84.0-3.fc38.x86_64 cyrus-sasl-lib-2.1.28-8.fc38.x86_64 dbus-libs-1:1.14.0-5.fc38.x86_64 dnf-4.13.0-3.fc37.noarch dnf-data-4.13.0-3.fc37.noarch dnf-plugins-core-4.2.1-3.fc37.noarch elfutils-default-yama-scope-0.187-8.fc38.noarch elfutils-libelf-0.187-8.fc38.x86_64 elfutils-libs-0.187-8.fc38.x86_64 expat-2.4.8-2.fc37.x86_64 fedora-gpg-keys-38-0.3.noarch fedora-release-38-0.3.noarch fedora-release-common-38-0.3.noarch fedora-release-identity-basic-38-0.3.noarch fedora-repos-38-0.3.noarch fedora-repos-rawhide-38-0.3.noarch file-libs-5.42-4.fc38.x86_64 filesystem-3.18-2.fc37.x86_64 findutils-1:4.9.0-2.fc37.x86_64 gawk-5.1.1-4.fc37.x86_64 gdbm-libs-1:1.23-2.fc37.x86_64 glib2-2.73.3-2.fc38.x86_64 glibc-2.36.9000-2.fc38.x86_64 glibc-common-2.36.9000-2.fc38.x86_64 glibc-minimal-langpack-2.36.9000-2.fc38.x86_64 gmp-1:6.2.1-3.fc37.x86_64 gnupg2-2.3.7-3.fc37.x86_64 gnutls-3.7.7-1.fc37.x86_64 gpgme-1.17.0-4.fc37.x86_64 grep-3.7-4.fc37.x86_64 ima-evm-utils-1.4-6.fc37.x86_64 json-c-0.16-2.fc37.x86_64 keyutils-libs-1.6.1-5.fc37.x86_64 krb5-libs-1.19.2-11.fc37.1.x86_64 libacl-2.3.1-4.fc37.x86_64 libarchive-3.6.1-2.fc37.x86_64 libassuan-2.5.5-5.fc37.x86_64 libattr-2.5.1-5.fc37.x86_64 libb2-0.98.1-7.fc37.x86_64 libblkid-2.38.1-2.fc38.x86_64 libbrotli-1.0.9-9.fc38.x86_64 libcap-2.48-5.fc37.x86_64 libcap-ng-0.8.3-3.fc37.x86_64 libcom_err-1.46.5-3.fc37.x86_64 libcomps-0.1.18-4.fc37.x86_64 libcurl-7.84.0-3.fc38.x86_64 libdnf-0.68.0-1.fc38.x86_64 libevent-2.1.12-7.fc37.x86_64 libffi-3.4.2-9.fc37.x86_64 libfsverity-1.4-8.fc37.x86_64 libgcc-12.2.1-1.fc38.x86_64 libgcrypt-1.10.1-4.fc37.x86_64 libgomp-12.2.1-1.fc38.x86_64 libgpg-error-1.45-2.fc37.x86_64 libidn2-2.3.3-2.fc37.x86_64 libksba-1.6.0-4.fc37.x86_64 libmodulemd-2.14.0-4.fc37.x86_64 libmount-2.38.1-2.fc38.x86_64 libnghttp2-1.49.0-1.fc38.x86_64 libnsl2-2.0.0-4.fc37.x86_64 libpsl-0.21.1-6.fc37.x86_64 librepo-1.14.4-1.fc38.x86_64 libreport-filesystem-2.17.2-1.fc38.noarch libselinux-3.4-5.fc37.x86_64 libsemanage-3.4-5.fc37.x86_64 libsepol-3.4-3.fc37.x86_64 libsigsegv-2.14-3.fc37.x86_64 libsmartcols-2.38.1-2.fc38.x86_64 libsolv-0.7.22-3.fc37.x86_64 libssh-0.9.6-5.fc37.x86_64 libssh-config-0.9.6-5.fc37.noarch libstdc++-12.2.1-1.fc38.x86_64 libtasn1-4.18.0-3.fc37.x86_64 libtirpc-1.3.3-0.fc37.x86_64 libunistring-1.0-2.fc37.x86_64 libuuid-2.38.1-2.fc38.x86_64 libverto-0.3.2-4.fc37.x86_64 libxcrypt-4.4.28-3.fc38.x86_64 libxml2-2.9.14-3.fc37.x86_64 libyaml-0.2.5-8.fc37.x86_64 libzstd-1.5.2-3.fc37.x86_64 lua-libs-5.4.4-4.fc37.x86_64 lz4-libs-1.9.3-5.fc37.x86_64 mpdecimal-2.5.1-4.fc37.x86_64 mpfr-4.1.0-10.fc37.x86_64 ncurses-base-6.3-3.20220501.fc37.noarch ncurses-libs-6.3-3.20220501.fc37.x86_64 nettle-3.8-2.fc37.x86_64 npth-1.6-9.fc37.x86_64 openldap-2.6.3-1.fc38.x86_64 openssl-libs-1:3.0.5-2.fc37.x86_64 p11-kit-0.24.1-3.fc37.x86_64 p11-kit-trust-0.24.1-3.fc37.x86_64 pcre-8.45-1.fc37.2.x86_64 pcre2-10.40-1.fc37.1.x86_64 pcre2-syntax-10.40-1.fc37.1.noarch popt-1.19~rc1-4.fc38.x86_64 publicsuffix-list-dafsa-20210518-5.fc37.noarch python-pip-wheel-22.2.2-1.fc38.noarch python-setuptools-wheel-65.3.0-1.fc38.noarch python3-3.11.0~rc1-2.fc38.x86_64 python3-dateutil-1:2.8.2-4.fc38.noarch python3-dbus-1.2.18-5.fc37.x86_64 python3-distro-1.7.0-3.fc37.noarch python3-dnf-4.13.0-3.fc37.noarch python3-dnf-plugins-core-4.2.1-3.fc37.noarch python3-gpg-1.17.0-4.fc37.x86_64 python3-hawkey-0.68.0-1.fc38.x86_64 python3-libcomps-0.1.18-4.fc37.x86_64 python3-libdnf-0.68.0-1.fc38.x86_64 python3-libs-3.11.0~rc1-2.fc38.x86_64 python3-rpm-4.18.0-0.beta1.4.fc37.x86_64 python3-six-1.16.0-8.fc37.noarch readline-8.1-7.fc37.x86_64 rpm-4.18.0-0.beta1.4.fc37.x86_64 rpm-build-libs-4.18.0-0.beta1.4.fc37.x86_64 rpm-libs-4.18.0-0.beta1.4.fc37.x86_64 rpm-sign-libs-4.18.0-0.beta1.4.fc37.x86_64 sed-4.8-11.fc37.x86_64 setup-2.14.1-2.fc37.noarch shadow-utils-2:4.12.3-1.fc38.x86_64 sqlite-libs-3.39.2-2.fc37.x86_64 systemd-libs-251.4-53.fc38.x86_64 tpm2-tss-3.2.0-3.fc37.x86_64 tzdata-2022c-1.fc38.noarch xz-libs-5.2.5-10.fc37.x86_64 zchunk-libs-1.2.2-2.fc37.x86_64 zlib-1.2.12-5.fc38.x86_64 Complete! Finish(bootstrap): dnf install Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1662051019.772805/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 3.1 INFO: Mock Version: 3.1 Start: dnf install No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 41 kB/s | 3.0 kB 00:00 Copr repository 17 MB/s | 4.6 MB 00:00 fedora 314 kB/s | 14 kB 00:00 fedora 2.1 MB/s | 1.7 MB 00:00 Last metadata expiration check: 0:00:01 ago on Thu Sep 1 16:51:00 2022. Dependencies resolved. ================================================================================ Package Arch Version Repo Size ================================================================================ Installing group/module packages: bash x86_64 5.1.16-3.fc37 fedora 1.7 M bzip2 x86_64 1.0.8-12.fc37 fedora 52 k coreutils x86_64 9.1-7.fc38 fedora 1.1 M cpio x86_64 2.13-13.fc37 fedora 277 k diffutils x86_64 3.8-3.fc37 fedora 378 k fedora-release-common noarch 38-0.3 fedora 22 k findutils x86_64 1:4.9.0-2.fc37 fedora 492 k gawk x86_64 5.1.1-4.fc37 fedora 1.0 M glibc-minimal-langpack x86_64 2.36.9000-2.fc38 fedora 10 k grep x86_64 3.7-4.fc37 fedora 273 k gzip x86_64 1.12-2.fc37 fedora 166 k info x86_64 6.8-4.fc37 fedora 225 k patch x86_64 2.7.6-17.fc37 fedora 124 k redhat-rpm-config noarch 230-1.fc38 fedora 81 k rpm-build x86_64 4.18.0-0.beta1.4.fc37 fedora 76 k sed x86_64 4.8-11.fc37 fedora 306 k shadow-utils x86_64 2:4.12.3-1.fc38 fedora 1.3 M tar x86_64 2:1.34-3.fc36 fedora 886 k unzip x86_64 6.0-58.fc37 fedora 182 k util-linux x86_64 2.38.1-2.fc38 fedora 2.3 M which x86_64 2.21-35.fc37 fedora 41 k xz x86_64 5.2.5-10.fc37 fedora 223 k Installing dependencies: alternatives x86_64 1.19-3.fc37 fedora 36 k ansible-srpm-macros noarch 1-7.fc38 fedora 7.7 k audit-libs x86_64 3.0.9-1.fc38 fedora 116 k authselect x86_64 1.4.0-3.fc37 fedora 144 k authselect-libs x86_64 1.4.0-3.fc37 fedora 248 k basesystem noarch 11-14.fc37 fedora 7.0 k binutils x86_64 2.39-2.fc38 fedora 5.4 M binutils-gold x86_64 2.39-2.fc38 fedora 778 k bzip2-libs x86_64 1.0.8-12.fc37 fedora 41 k ca-certificates noarch 2022.2.54-5.fc37 fedora 829 k coreutils-common x86_64 9.1-7.fc38 fedora 2.0 M cracklib x86_64 2.9.7-30.fc38 fedora 92 k crypto-policies noarch 20220824-2.git2187e9c.fc38 fedora 86 k curl x86_64 7.84.0-3.fc38 fedora 312 k cyrus-sasl-lib x86_64 2.1.28-8.fc38 fedora 792 k debugedit x86_64 5.0-5.fc37 fedora 77 k dwz x86_64 0.14-7.fc37 fedora 129 k ed x86_64 1.18-2.fc37 fedora 78 k efi-srpm-macros noarch 5-6.fc37 fedora 22 k elfutils x86_64 0.187-8.fc38 fedora 529 k elfutils-debuginfod-client x86_64 0.187-8.fc38 fedora 39 k elfutils-default-yama-scope noarch 0.187-8.fc38 fedora 16 k elfutils-libelf x86_64 0.187-8.fc38 fedora 197 k elfutils-libs x86_64 0.187-8.fc38 fedora 257 k fedora-gpg-keys noarch 38-0.3 fedora 125 k fedora-release noarch 38-0.3 fedora 11 k fedora-release-identity-basic noarch 38-0.3 fedora 12 k fedora-repos noarch 38-0.3 fedora 10 k fedora-repos-rawhide noarch 38-0.3 fedora 9.7 k file x86_64 5.42-4.fc38 copr_base 49 k file-libs x86_64 5.42-4.fc38 copr_base 676 k filesystem x86_64 3.18-2.fc37 fedora 1.1 M fonts-srpm-macros noarch 1:2.0.5-9.fc38 fedora 26 k fpc-srpm-macros noarch 1.3-6.fc37 fedora 7.7 k gdb-minimal x86_64 12.1-4.fc37 fedora 3.9 M gdbm-libs x86_64 1:1.23-2.fc37 fedora 56 k ghc-srpm-macros noarch 1.5.0-7.fc37 fedora 7.8 k glibc x86_64 2.36.9000-2.fc38 fedora 2.1 M glibc-common x86_64 2.36.9000-2.fc38 fedora 288 k glibc-gconv-extra x86_64 2.36.9000-2.fc38 fedora 1.6 M gmp x86_64 1:6.2.1-3.fc37 fedora 315 k gnat-srpm-macros noarch 4-16.fc37 fedora 8.3 k go-srpm-macros noarch 3.1.0-4.fc37 fedora 27 k jansson x86_64 2.13.1-5.fc37 fedora 44 k kernel-srpm-macros noarch 1.0-15.fc37 fedora 9.4 k keyutils-libs x86_64 1.6.1-5.fc37 fedora 31 k krb5-libs x86_64 1.19.2-11.fc37.1 fedora 727 k libacl x86_64 2.3.1-4.fc37 fedora 23 k libarchive x86_64 3.6.1-2.fc37 fedora 397 k libattr x86_64 2.5.1-5.fc37 fedora 18 k libblkid x86_64 2.38.1-2.fc38 fedora 107 k libbrotli x86_64 1.0.9-9.fc38 copr_base 316 k libcap x86_64 2.48-5.fc37 fedora 67 k libcap-ng x86_64 0.8.3-3.fc37 fedora 33 k libcom_err x86_64 1.46.5-3.fc37 fedora 25 k libcurl x86_64 7.84.0-3.fc38 fedora 306 k libdb x86_64 5.3.28-53.fc37 fedora 760 k libeconf x86_64 0.4.0-4.fc37 fedora 27 k libevent x86_64 2.1.12-7.fc37 fedora 261 k libfdisk x86_64 2.38.1-2.fc38 fedora 160 k libffi x86_64 3.4.2-9.fc37 fedora 37 k libgcc x86_64 12.2.1-1.fc38 fedora 106 k libgomp x86_64 12.2.1-1.fc38 fedora 293 k libidn2 x86_64 2.3.3-2.fc37 fedora 113 k libmount x86_64 2.38.1-2.fc38 fedora 135 k libnghttp2 x86_64 1.49.0-1.fc38 fedora 74 k libnsl2 x86_64 2.0.0-4.fc37 fedora 30 k libpkgconf x86_64 1.8.0-3.fc37 fedora 36 k libpsl x86_64 0.21.1-6.fc37 fedora 63 k libpwquality x86_64 1.4.4-11.fc37 fedora 116 k libselinux x86_64 3.4-5.fc37 fedora 86 k libsemanage x86_64 3.4-5.fc37 fedora 120 k libsepol x86_64 3.4-3.fc37 fedora 322 k libsigsegv x86_64 2.14-3.fc37 fedora 27 k libsmartcols x86_64 2.38.1-2.fc38 fedora 64 k libssh x86_64 0.9.6-5.fc37 fedora 203 k libssh-config noarch 0.9.6-5.fc37 fedora 7.8 k libstdc++ x86_64 12.2.1-1.fc38 fedora 799 k libtasn1 x86_64 4.18.0-3.fc37 fedora 75 k libtirpc x86_64 1.3.3-0.fc37 fedora 93 k libunistring x86_64 1.0-2.fc37 fedora 549 k libutempter x86_64 1.2.1-7.fc37 fedora 26 k libuuid x86_64 2.38.1-2.fc38 fedora 28 k libverto x86_64 0.3.2-4.fc37 fedora 21 k libxcrypt x86_64 4.4.28-3.fc38 fedora 117 k libxml2 x86_64 2.9.14-3.fc37 fedora 752 k libzstd x86_64 1.5.2-3.fc37 fedora 294 k lua-libs x86_64 5.4.4-4.fc37 fedora 217 k lua-srpm-macros noarch 1-7.fc37 fedora 8.8 k lz4-libs x86_64 1.9.3-5.fc37 fedora 70 k mpfr x86_64 4.1.0-10.fc37 fedora 331 k ncurses-base noarch 6.3-3.20220501.fc37 fedora 86 k ncurses-libs x86_64 6.3-3.20220501.fc37 fedora 329 k nim-srpm-macros noarch 3-7.fc37 fedora 8.4 k ocaml-srpm-macros noarch 7-2.fc37 fedora 13 k openblas-srpm-macros noarch 2-12.fc37 fedora 7.5 k openldap x86_64 2.6.3-1.fc38 fedora 254 k openssl-libs x86_64 1:3.0.5-2.fc37 fedora 2.1 M p11-kit x86_64 0.24.1-3.fc37 fedora 376 k p11-kit-trust x86_64 0.24.1-3.fc37 fedora 138 k package-notes-srpm-macros noarch 0.5-4.fc38 fedora 10 k pam x86_64 1.5.2-14.fc37 fedora 560 k pam-libs x86_64 1.5.2-14.fc37 fedora 58 k pcre x86_64 8.45-1.fc37.2 fedora 202 k pcre2 x86_64 10.40-1.fc37.1 fedora 236 k pcre2-syntax noarch 10.40-1.fc37.1 fedora 142 k perl-srpm-macros noarch 1-46.fc37 fedora 8.3 k pkgconf x86_64 1.8.0-3.fc37 fedora 41 k pkgconf-m4 noarch 1.8.0-3.fc37 fedora 14 k pkgconf-pkg-config x86_64 1.8.0-3.fc37 fedora 10 k popt x86_64 1.19~rc1-4.fc38 fedora 65 k publicsuffix-list-dafsa noarch 20210518-5.fc37 fedora 58 k python-srpm-macros noarch 3.11-4.fc37 fedora 25 k qt5-srpm-macros noarch 5.15.5-2.fc37 fedora 8.1 k readline x86_64 8.1-7.fc37 fedora 211 k rpm x86_64 4.18.0-0.beta1.4.fc37 fedora 570 k rpm-build-libs x86_64 4.18.0-0.beta1.4.fc37 fedora 93 k rpm-libs x86_64 4.18.0-0.beta1.4.fc37 fedora 319 k rpmautospec-rpm-macros noarch 0.3.0-1.fc37 fedora 8.8 k rust-srpm-macros noarch 22-1.fc37 fedora 9.5 k setup noarch 2.14.1-2.fc37 fedora 149 k sqlite-libs x86_64 3.39.2-2.fc37 fedora 657 k systemd-libs x86_64 251.4-53.fc38 fedora 620 k tzdata noarch 2022c-1.fc38 fedora 717 k util-linux-core x86_64 2.38.1-2.fc38 fedora 470 k xxhash-libs x86_64 0.8.1-3.fc37 fedora 41 k xz-libs x86_64 5.2.5-10.fc37 fedora 92 k zip x86_64 3.0-33.fc37 fedora 259 k zlib x86_64 1.2.12-5.fc38 fedora 94 k zstd x86_64 1.5.2-3.fc37 fedora 447 k Installing Groups: Buildsystem building group Transaction Summary ================================================================================ Install 152 Packages Total size: 51 M Installed size: 177 M Downloading Packages: [SKIPPED] file-5.42-4.fc38.x86_64.rpm: Already downloaded [SKIPPED] file-libs-5.42-4.fc38.x86_64.rpm: Already downloaded [SKIPPED] libbrotli-1.0.9-9.fc38.x86_64.rpm: Already downloaded [SKIPPED] alternatives-1.19-3.fc37.x86_64.rpm: Already downloaded [SKIPPED] ansible-srpm-macros-1-7.fc38.noarch.rpm: Already downloaded [SKIPPED] audit-libs-3.0.9-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] authselect-1.4.0-3.fc37.x86_64.rpm: Already downloaded [SKIPPED] authselect-libs-1.4.0-3.fc37.x86_64.rpm: Already downloaded [SKIPPED] basesystem-11-14.fc37.noarch.rpm: Already downloaded [SKIPPED] bash-5.1.16-3.fc37.x86_64.rpm: Already downloaded [SKIPPED] binutils-2.39-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] binutils-gold-2.39-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] bzip2-1.0.8-12.fc37.x86_64.rpm: Already downloaded [SKIPPED] bzip2-libs-1.0.8-12.fc37.x86_64.rpm: Already downloaded [SKIPPED] ca-certificates-2022.2.54-5.fc37.noarch.rpm: Already downloaded [SKIPPED] coreutils-9.1-7.fc38.x86_64.rpm: Already downloaded [SKIPPED] coreutils-common-9.1-7.fc38.x86_64.rpm: Already downloaded [SKIPPED] cpio-2.13-13.fc37.x86_64.rpm: Already downloaded [SKIPPED] cracklib-2.9.7-30.fc38.x86_64.rpm: Already downloaded [SKIPPED] crypto-policies-20220824-2.git2187e9c.fc38.noarch.rpm: Already downloaded [SKIPPED] curl-7.84.0-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] cyrus-sasl-lib-2.1.28-8.fc38.x86_64.rpm: Already downloaded [SKIPPED] debugedit-5.0-5.fc37.x86_64.rpm: Already downloaded [SKIPPED] diffutils-3.8-3.fc37.x86_64.rpm: Already downloaded [SKIPPED] dwz-0.14-7.fc37.x86_64.rpm: Already downloaded [SKIPPED] ed-1.18-2.fc37.x86_64.rpm: Already downloaded [SKIPPED] efi-srpm-macros-5-6.fc37.noarch.rpm: Already downloaded [SKIPPED] elfutils-0.187-8.fc38.x86_64.rpm: Already downloaded [SKIPPED] elfutils-debuginfod-client-0.187-8.fc38.x86_64.rpm: Already downloaded [SKIPPED] elfutils-default-yama-scope-0.187-8.fc38.noarch.rpm: Already downloaded [SKIPPED] elfutils-libelf-0.187-8.fc38.x86_64.rpm: Already downloaded [SKIPPED] elfutils-libs-0.187-8.fc38.x86_64.rpm: Already downloaded [SKIPPED] fedora-gpg-keys-38-0.3.noarch.rpm: Already downloaded [SKIPPED] fedora-release-38-0.3.noarch.rpm: Already downloaded [SKIPPED] fedora-release-common-38-0.3.noarch.rpm: Already downloaded [SKIPPED] fedora-release-identity-basic-38-0.3.noarch.rpm: Already downloaded [SKIPPED] fedora-repos-38-0.3.noarch.rpm: Already downloaded [SKIPPED] fedora-repos-rawhide-38-0.3.noarch.rpm: Already downloaded [SKIPPED] filesystem-3.18-2.fc37.x86_64.rpm: Already downloaded [SKIPPED] findutils-4.9.0-2.fc37.x86_64.rpm: Already downloaded [SKIPPED] 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xxhash-libs-0.8.1-3.fc37.x86_64.rpm: Already downloaded [SKIPPED] xz-5.2.5-10.fc37.x86_64.rpm: Already downloaded [SKIPPED] xz-libs-5.2.5-10.fc37.x86_64.rpm: Already downloaded [SKIPPED] zip-3.0-33.fc37.x86_64.rpm: Already downloaded [SKIPPED] zlib-1.2.12-5.fc38.x86_64.rpm: Already downloaded [SKIPPED] zstd-1.5.2-3.fc37.x86_64.rpm: Already downloaded fedora 1.6 MB/s | 1.6 kB 00:00 Importing GPG key 0xEB10B464: Userid : "Fedora (38) " Fingerprint: 6A51 BBAB BA3D 5467 B617 1221 809A 8D7C EB10 B464 From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-38-primary Key imported successfully fedora 1.6 MB/s | 1.6 kB 00:00 GPG key at file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-38-primary (0xEB10B464) is already installed fedora 1.6 MB/s | 1.6 kB 00:00 Importing GPG key 0x5323552A: Userid : "Fedora (37) " Fingerprint: ACB5 EE4E 831C 74BB 7C16 8D27 F55A D3FB 5323 552A From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-37-primary Key imported successfully Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Running scriptlet: filesystem-3.18-2.fc37.x86_64 1/1 Preparing : 1/1 Installing : libgcc-12.2.1-1.fc38.x86_64 1/152 Running scriptlet: libgcc-12.2.1-1.fc38.x86_64 1/152 Installing : crypto-policies-20220824-2.git2187e9c.fc38.noarc 2/152 Running scriptlet: crypto-policies-20220824-2.git2187e9c.fc38.noarc 2/152 Installing : fedora-release-identity-basic-38-0.3.noarch 3/152 Installing : tzdata-2022c-1.fc38.noarch 4/152 Installing : rust-srpm-macros-22-1.fc37.noarch 5/152 Installing : qt5-srpm-macros-5.15.5-2.fc37.noarch 6/152 Installing : publicsuffix-list-dafsa-20210518-5.fc37.noarch 7/152 Installing : pkgconf-m4-1.8.0-3.fc37.noarch 8/152 Installing : perl-srpm-macros-1-46.fc37.noarch 9/152 Installing : pcre2-syntax-10.40-1.fc37.1.noarch 10/152 Installing : package-notes-srpm-macros-0.5-4.fc38.noarch 11/152 Installing : openblas-srpm-macros-2-12.fc37.noarch 12/152 Installing : ocaml-srpm-macros-7-2.fc37.noarch 13/152 Installing : nim-srpm-macros-3-7.fc37.noarch 14/152 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Installing : authselect-libs-1.4.0-3.fc37.x86_64 118/152 Installing : gzip-1.12-2.fc37.x86_64 119/152 Installing : cracklib-2.9.7-30.fc38.x86_64 120/152 Installing : libpwquality-1.4.4-11.fc37.x86_64 121/152 Installing : authselect-1.4.0-3.fc37.x86_64 122/152 Installing : libnsl2-2.0.0-4.fc37.x86_64 123/152 Installing : pam-1.5.2-14.fc37.x86_64 124/152 Installing : libssh-0.9.6-5.fc37.x86_64 125/152 Installing : libarchive-3.6.1-2.fc37.x86_64 126/152 Installing : libevent-2.1.12-7.fc37.x86_64 127/152 Installing : openldap-2.6.3-1.fc38.x86_64 128/152 Installing : libcurl-7.84.0-3.fc38.x86_64 129/152 Installing : elfutils-libs-0.187-8.fc38.x86_64 130/152 Installing : elfutils-debuginfod-client-0.187-8.fc38.x86_64 131/152 Installing : binutils-gold-2.39-2.fc38.x86_64 132/152 Installing : binutils-2.39-2.fc38.x86_64 133/152 Running scriptlet: binutils-2.39-2.fc38.x86_64 133/152 Installing : elfutils-0.187-8.fc38.x86_64 134/152 Installing : gdb-minimal-12.1-4.fc37.x86_64 135/152 Installing : debugedit-5.0-5.fc37.x86_64 136/152 Installing : curl-7.84.0-3.fc38.x86_64 137/152 Installing : rpm-libs-4.18.0-0.beta1.4.fc37.x86_64 138/152 Running scriptlet: rpm-4.18.0-0.beta1.4.fc37.x86_64 139/152 Installing : rpm-4.18.0-0.beta1.4.fc37.x86_64 139/152 Installing : efi-srpm-macros-5-6.fc37.noarch 140/152 Installing : lua-srpm-macros-1-7.fc37.noarch 141/152 Installing : rpmautospec-rpm-macros-0.3.0-1.fc37.noarch 142/152 Installing : rpm-build-libs-4.18.0-0.beta1.4.fc37.x86_64 143/152 Installing : ansible-srpm-macros-1-7.fc38.noarch 144/152 Installing : fonts-srpm-macros-1:2.0.5-9.fc38.noarch 145/152 Installing : go-srpm-macros-3.1.0-4.fc37.noarch 146/152 Installing : python-srpm-macros-3.11-4.fc37.noarch 147/152 Installing : redhat-rpm-config-230-1.fc38.noarch 148/152 Installing : rpm-build-4.18.0-0.beta1.4.fc37.x86_64 149/152 Installing : util-linux-2.38.1-2.fc38.x86_64 150/152 Installing : which-2.21-35.fc37.x86_64 151/152 Installing : info-6.8-4.fc37.x86_64 152/152 Running scriptlet: filesystem-3.18-2.fc37.x86_64 152/152 Running scriptlet: ca-certificates-2022.2.54-5.fc37.noarch 152/152 Running scriptlet: authselect-libs-1.4.0-3.fc37.x86_64 152/152 Running scriptlet: rpm-4.18.0-0.beta1.4.fc37.x86_64 152/152 Running scriptlet: info-6.8-4.fc37.x86_64 152/152 Verifying : file-5.42-4.fc38.x86_64 1/152 Verifying : file-libs-5.42-4.fc38.x86_64 2/152 Verifying : libbrotli-1.0.9-9.fc38.x86_64 3/152 Verifying : alternatives-1.19-3.fc37.x86_64 4/152 Verifying : ansible-srpm-macros-1-7.fc38.noarch 5/152 Verifying : audit-libs-3.0.9-1.fc38.x86_64 6/152 Verifying : authselect-1.4.0-3.fc37.x86_64 7/152 Verifying : authselect-libs-1.4.0-3.fc37.x86_64 8/152 Verifying : basesystem-11-14.fc37.noarch 9/152 Verifying : bash-5.1.16-3.fc37.x86_64 10/152 Verifying : binutils-2.39-2.fc38.x86_64 11/152 Verifying : binutils-gold-2.39-2.fc38.x86_64 12/152 Verifying : bzip2-1.0.8-12.fc37.x86_64 13/152 Verifying : bzip2-libs-1.0.8-12.fc37.x86_64 14/152 Verifying : ca-certificates-2022.2.54-5.fc37.noarch 15/152 Verifying : coreutils-9.1-7.fc38.x86_64 16/152 Verifying : coreutils-common-9.1-7.fc38.x86_64 17/152 Verifying : cpio-2.13-13.fc37.x86_64 18/152 Verifying : cracklib-2.9.7-30.fc38.x86_64 19/152 Verifying : crypto-policies-20220824-2.git2187e9c.fc38.noarc 20/152 Verifying : curl-7.84.0-3.fc38.x86_64 21/152 Verifying : cyrus-sasl-lib-2.1.28-8.fc38.x86_64 22/152 Verifying : debugedit-5.0-5.fc37.x86_64 23/152 Verifying : diffutils-3.8-3.fc37.x86_64 24/152 Verifying : dwz-0.14-7.fc37.x86_64 25/152 Verifying : ed-1.18-2.fc37.x86_64 26/152 Verifying : efi-srpm-macros-5-6.fc37.noarch 27/152 Verifying : elfutils-0.187-8.fc38.x86_64 28/152 Verifying : elfutils-debuginfod-client-0.187-8.fc38.x86_64 29/152 Verifying : elfutils-default-yama-scope-0.187-8.fc38.noarch 30/152 Verifying : elfutils-libelf-0.187-8.fc38.x86_64 31/152 Verifying : elfutils-libs-0.187-8.fc38.x86_64 32/152 Verifying : fedora-gpg-keys-38-0.3.noarch 33/152 Verifying : fedora-release-38-0.3.noarch 34/152 Verifying : fedora-release-common-38-0.3.noarch 35/152 Verifying : fedora-release-identity-basic-38-0.3.noarch 36/152 Verifying : fedora-repos-38-0.3.noarch 37/152 Verifying : fedora-repos-rawhide-38-0.3.noarch 38/152 Verifying : filesystem-3.18-2.fc37.x86_64 39/152 Verifying : findutils-1:4.9.0-2.fc37.x86_64 40/152 Verifying : fonts-srpm-macros-1:2.0.5-9.fc38.noarch 41/152 Verifying : fpc-srpm-macros-1.3-6.fc37.noarch 42/152 Verifying : gawk-5.1.1-4.fc37.x86_64 43/152 Verifying : gdb-minimal-12.1-4.fc37.x86_64 44/152 Verifying : gdbm-libs-1:1.23-2.fc37.x86_64 45/152 Verifying : ghc-srpm-macros-1.5.0-7.fc37.noarch 46/152 Verifying : glibc-2.36.9000-2.fc38.x86_64 47/152 Verifying : glibc-common-2.36.9000-2.fc38.x86_64 48/152 Verifying : glibc-gconv-extra-2.36.9000-2.fc38.x86_64 49/152 Verifying : glibc-minimal-langpack-2.36.9000-2.fc38.x86_64 50/152 Verifying : gmp-1:6.2.1-3.fc37.x86_64 51/152 Verifying : gnat-srpm-macros-4-16.fc37.noarch 52/152 Verifying : go-srpm-macros-3.1.0-4.fc37.noarch 53/152 Verifying : grep-3.7-4.fc37.x86_64 54/152 Verifying : gzip-1.12-2.fc37.x86_64 55/152 Verifying : info-6.8-4.fc37.x86_64 56/152 Verifying : jansson-2.13.1-5.fc37.x86_64 57/152 Verifying : kernel-srpm-macros-1.0-15.fc37.noarch 58/152 Verifying : keyutils-libs-1.6.1-5.fc37.x86_64 59/152 Verifying : krb5-libs-1.19.2-11.fc37.1.x86_64 60/152 Verifying : libacl-2.3.1-4.fc37.x86_64 61/152 Verifying : libarchive-3.6.1-2.fc37.x86_64 62/152 Verifying : libattr-2.5.1-5.fc37.x86_64 63/152 Verifying : libblkid-2.38.1-2.fc38.x86_64 64/152 Verifying : libcap-2.48-5.fc37.x86_64 65/152 Verifying : libcap-ng-0.8.3-3.fc37.x86_64 66/152 Verifying : libcom_err-1.46.5-3.fc37.x86_64 67/152 Verifying : libcurl-7.84.0-3.fc38.x86_64 68/152 Verifying : libdb-5.3.28-53.fc37.x86_64 69/152 Verifying : libeconf-0.4.0-4.fc37.x86_64 70/152 Verifying : libevent-2.1.12-7.fc37.x86_64 71/152 Verifying : libfdisk-2.38.1-2.fc38.x86_64 72/152 Verifying : libffi-3.4.2-9.fc37.x86_64 73/152 Verifying : libgcc-12.2.1-1.fc38.x86_64 74/152 Verifying : libgomp-12.2.1-1.fc38.x86_64 75/152 Verifying : libidn2-2.3.3-2.fc37.x86_64 76/152 Verifying : libmount-2.38.1-2.fc38.x86_64 77/152 Verifying : libnghttp2-1.49.0-1.fc38.x86_64 78/152 Verifying : libnsl2-2.0.0-4.fc37.x86_64 79/152 Verifying : libpkgconf-1.8.0-3.fc37.x86_64 80/152 Verifying : libpsl-0.21.1-6.fc37.x86_64 81/152 Verifying : libpwquality-1.4.4-11.fc37.x86_64 82/152 Verifying : libselinux-3.4-5.fc37.x86_64 83/152 Verifying : libsemanage-3.4-5.fc37.x86_64 84/152 Verifying : libsepol-3.4-3.fc37.x86_64 85/152 Verifying : libsigsegv-2.14-3.fc37.x86_64 86/152 Verifying : libsmartcols-2.38.1-2.fc38.x86_64 87/152 Verifying : libssh-0.9.6-5.fc37.x86_64 88/152 Verifying : libssh-config-0.9.6-5.fc37.noarch 89/152 Verifying : libstdc++-12.2.1-1.fc38.x86_64 90/152 Verifying : libtasn1-4.18.0-3.fc37.x86_64 91/152 Verifying : libtirpc-1.3.3-0.fc37.x86_64 92/152 Verifying : libunistring-1.0-2.fc37.x86_64 93/152 Verifying : libutempter-1.2.1-7.fc37.x86_64 94/152 Verifying : libuuid-2.38.1-2.fc38.x86_64 95/152 Verifying : libverto-0.3.2-4.fc37.x86_64 96/152 Verifying : libxcrypt-4.4.28-3.fc38.x86_64 97/152 Verifying : libxml2-2.9.14-3.fc37.x86_64 98/152 Verifying : libzstd-1.5.2-3.fc37.x86_64 99/152 Verifying : lua-libs-5.4.4-4.fc37.x86_64 100/152 Verifying : lua-srpm-macros-1-7.fc37.noarch 101/152 Verifying : lz4-libs-1.9.3-5.fc37.x86_64 102/152 Verifying : mpfr-4.1.0-10.fc37.x86_64 103/152 Verifying : ncurses-base-6.3-3.20220501.fc37.noarch 104/152 Verifying : ncurses-libs-6.3-3.20220501.fc37.x86_64 105/152 Verifying : nim-srpm-macros-3-7.fc37.noarch 106/152 Verifying : ocaml-srpm-macros-7-2.fc37.noarch 107/152 Verifying : openblas-srpm-macros-2-12.fc37.noarch 108/152 Verifying : openldap-2.6.3-1.fc38.x86_64 109/152 Verifying : openssl-libs-1:3.0.5-2.fc37.x86_64 110/152 Verifying : p11-kit-0.24.1-3.fc37.x86_64 111/152 Verifying : p11-kit-trust-0.24.1-3.fc37.x86_64 112/152 Verifying : package-notes-srpm-macros-0.5-4.fc38.noarch 113/152 Verifying : pam-1.5.2-14.fc37.x86_64 114/152 Verifying : pam-libs-1.5.2-14.fc37.x86_64 115/152 Verifying : patch-2.7.6-17.fc37.x86_64 116/152 Verifying : pcre-8.45-1.fc37.2.x86_64 117/152 Verifying : pcre2-10.40-1.fc37.1.x86_64 118/152 Verifying : pcre2-syntax-10.40-1.fc37.1.noarch 119/152 Verifying : perl-srpm-macros-1-46.fc37.noarch 120/152 Verifying : pkgconf-1.8.0-3.fc37.x86_64 121/152 Verifying : pkgconf-m4-1.8.0-3.fc37.noarch 122/152 Verifying : pkgconf-pkg-config-1.8.0-3.fc37.x86_64 123/152 Verifying : popt-1.19~rc1-4.fc38.x86_64 124/152 Verifying : publicsuffix-list-dafsa-20210518-5.fc37.noarch 125/152 Verifying : python-srpm-macros-3.11-4.fc37.noarch 126/152 Verifying : qt5-srpm-macros-5.15.5-2.fc37.noarch 127/152 Verifying : readline-8.1-7.fc37.x86_64 128/152 Verifying : redhat-rpm-config-230-1.fc38.noarch 129/152 Verifying : rpm-4.18.0-0.beta1.4.fc37.x86_64 130/152 Verifying : rpm-build-4.18.0-0.beta1.4.fc37.x86_64 131/152 Verifying : rpm-build-libs-4.18.0-0.beta1.4.fc37.x86_64 132/152 Verifying : rpm-libs-4.18.0-0.beta1.4.fc37.x86_64 133/152 Verifying : rpmautospec-rpm-macros-0.3.0-1.fc37.noarch 134/152 Verifying : rust-srpm-macros-22-1.fc37.noarch 135/152 Verifying : sed-4.8-11.fc37.x86_64 136/152 Verifying : setup-2.14.1-2.fc37.noarch 137/152 Verifying : shadow-utils-2:4.12.3-1.fc38.x86_64 138/152 Verifying : sqlite-libs-3.39.2-2.fc37.x86_64 139/152 Verifying : systemd-libs-251.4-53.fc38.x86_64 140/152 Verifying : tar-2:1.34-3.fc36.x86_64 141/152 Verifying : tzdata-2022c-1.fc38.noarch 142/152 Verifying : unzip-6.0-58.fc37.x86_64 143/152 Verifying : util-linux-2.38.1-2.fc38.x86_64 144/152 Verifying : util-linux-core-2.38.1-2.fc38.x86_64 145/152 Verifying : which-2.21-35.fc37.x86_64 146/152 Verifying : xxhash-libs-0.8.1-3.fc37.x86_64 147/152 Verifying : xz-5.2.5-10.fc37.x86_64 148/152 Verifying : xz-libs-5.2.5-10.fc37.x86_64 149/152 Verifying : zip-3.0-33.fc37.x86_64 150/152 Verifying : zlib-1.2.12-5.fc38.x86_64 151/152 Verifying : zstd-1.5.2-3.fc37.x86_64 152/152 Installed: alternatives-1.19-3.fc37.x86_64 ansible-srpm-macros-1-7.fc38.noarch audit-libs-3.0.9-1.fc38.x86_64 authselect-1.4.0-3.fc37.x86_64 authselect-libs-1.4.0-3.fc37.x86_64 basesystem-11-14.fc37.noarch bash-5.1.16-3.fc37.x86_64 binutils-2.39-2.fc38.x86_64 binutils-gold-2.39-2.fc38.x86_64 bzip2-1.0.8-12.fc37.x86_64 bzip2-libs-1.0.8-12.fc37.x86_64 ca-certificates-2022.2.54-5.fc37.noarch coreutils-9.1-7.fc38.x86_64 coreutils-common-9.1-7.fc38.x86_64 cpio-2.13-13.fc37.x86_64 cracklib-2.9.7-30.fc38.x86_64 crypto-policies-20220824-2.git2187e9c.fc38.noarch curl-7.84.0-3.fc38.x86_64 cyrus-sasl-lib-2.1.28-8.fc38.x86_64 debugedit-5.0-5.fc37.x86_64 diffutils-3.8-3.fc37.x86_64 dwz-0.14-7.fc37.x86_64 ed-1.18-2.fc37.x86_64 efi-srpm-macros-5-6.fc37.noarch elfutils-0.187-8.fc38.x86_64 elfutils-debuginfod-client-0.187-8.fc38.x86_64 elfutils-default-yama-scope-0.187-8.fc38.noarch elfutils-libelf-0.187-8.fc38.x86_64 elfutils-libs-0.187-8.fc38.x86_64 fedora-gpg-keys-38-0.3.noarch fedora-release-38-0.3.noarch fedora-release-common-38-0.3.noarch fedora-release-identity-basic-38-0.3.noarch fedora-repos-38-0.3.noarch fedora-repos-rawhide-38-0.3.noarch file-5.42-4.fc38.x86_64 file-libs-5.42-4.fc38.x86_64 filesystem-3.18-2.fc37.x86_64 findutils-1:4.9.0-2.fc37.x86_64 fonts-srpm-macros-1:2.0.5-9.fc38.noarch fpc-srpm-macros-1.3-6.fc37.noarch gawk-5.1.1-4.fc37.x86_64 gdb-minimal-12.1-4.fc37.x86_64 gdbm-libs-1:1.23-2.fc37.x86_64 ghc-srpm-macros-1.5.0-7.fc37.noarch glibc-2.36.9000-2.fc38.x86_64 glibc-common-2.36.9000-2.fc38.x86_64 glibc-gconv-extra-2.36.9000-2.fc38.x86_64 glibc-minimal-langpack-2.36.9000-2.fc38.x86_64 gmp-1:6.2.1-3.fc37.x86_64 gnat-srpm-macros-4-16.fc37.noarch go-srpm-macros-3.1.0-4.fc37.noarch grep-3.7-4.fc37.x86_64 gzip-1.12-2.fc37.x86_64 info-6.8-4.fc37.x86_64 jansson-2.13.1-5.fc37.x86_64 kernel-srpm-macros-1.0-15.fc37.noarch keyutils-libs-1.6.1-5.fc37.x86_64 krb5-libs-1.19.2-11.fc37.1.x86_64 libacl-2.3.1-4.fc37.x86_64 libarchive-3.6.1-2.fc37.x86_64 libattr-2.5.1-5.fc37.x86_64 libblkid-2.38.1-2.fc38.x86_64 libbrotli-1.0.9-9.fc38.x86_64 libcap-2.48-5.fc37.x86_64 libcap-ng-0.8.3-3.fc37.x86_64 libcom_err-1.46.5-3.fc37.x86_64 libcurl-7.84.0-3.fc38.x86_64 libdb-5.3.28-53.fc37.x86_64 libeconf-0.4.0-4.fc37.x86_64 libevent-2.1.12-7.fc37.x86_64 libfdisk-2.38.1-2.fc38.x86_64 libffi-3.4.2-9.fc37.x86_64 libgcc-12.2.1-1.fc38.x86_64 libgomp-12.2.1-1.fc38.x86_64 libidn2-2.3.3-2.fc37.x86_64 libmount-2.38.1-2.fc38.x86_64 libnghttp2-1.49.0-1.fc38.x86_64 libnsl2-2.0.0-4.fc37.x86_64 libpkgconf-1.8.0-3.fc37.x86_64 libpsl-0.21.1-6.fc37.x86_64 libpwquality-1.4.4-11.fc37.x86_64 libselinux-3.4-5.fc37.x86_64 libsemanage-3.4-5.fc37.x86_64 libsepol-3.4-3.fc37.x86_64 libsigsegv-2.14-3.fc37.x86_64 libsmartcols-2.38.1-2.fc38.x86_64 libssh-0.9.6-5.fc37.x86_64 libssh-config-0.9.6-5.fc37.noarch libstdc++-12.2.1-1.fc38.x86_64 libtasn1-4.18.0-3.fc37.x86_64 libtirpc-1.3.3-0.fc37.x86_64 libunistring-1.0-2.fc37.x86_64 libutempter-1.2.1-7.fc37.x86_64 libuuid-2.38.1-2.fc38.x86_64 libverto-0.3.2-4.fc37.x86_64 libxcrypt-4.4.28-3.fc38.x86_64 libxml2-2.9.14-3.fc37.x86_64 libzstd-1.5.2-3.fc37.x86_64 lua-libs-5.4.4-4.fc37.x86_64 lua-srpm-macros-1-7.fc37.noarch lz4-libs-1.9.3-5.fc37.x86_64 mpfr-4.1.0-10.fc37.x86_64 ncurses-base-6.3-3.20220501.fc37.noarch ncurses-libs-6.3-3.20220501.fc37.x86_64 nim-srpm-macros-3-7.fc37.noarch ocaml-srpm-macros-7-2.fc37.noarch openblas-srpm-macros-2-12.fc37.noarch openldap-2.6.3-1.fc38.x86_64 openssl-libs-1:3.0.5-2.fc37.x86_64 p11-kit-0.24.1-3.fc37.x86_64 p11-kit-trust-0.24.1-3.fc37.x86_64 package-notes-srpm-macros-0.5-4.fc38.noarch pam-1.5.2-14.fc37.x86_64 pam-libs-1.5.2-14.fc37.x86_64 patch-2.7.6-17.fc37.x86_64 pcre-8.45-1.fc37.2.x86_64 pcre2-10.40-1.fc37.1.x86_64 pcre2-syntax-10.40-1.fc37.1.noarch perl-srpm-macros-1-46.fc37.noarch pkgconf-1.8.0-3.fc37.x86_64 pkgconf-m4-1.8.0-3.fc37.noarch pkgconf-pkg-config-1.8.0-3.fc37.x86_64 popt-1.19~rc1-4.fc38.x86_64 publicsuffix-list-dafsa-20210518-5.fc37.noarch python-srpm-macros-3.11-4.fc37.noarch qt5-srpm-macros-5.15.5-2.fc37.noarch readline-8.1-7.fc37.x86_64 redhat-rpm-config-230-1.fc38.noarch rpm-4.18.0-0.beta1.4.fc37.x86_64 rpm-build-4.18.0-0.beta1.4.fc37.x86_64 rpm-build-libs-4.18.0-0.beta1.4.fc37.x86_64 rpm-libs-4.18.0-0.beta1.4.fc37.x86_64 rpmautospec-rpm-macros-0.3.0-1.fc37.noarch rust-srpm-macros-22-1.fc37.noarch sed-4.8-11.fc37.x86_64 setup-2.14.1-2.fc37.noarch shadow-utils-2:4.12.3-1.fc38.x86_64 sqlite-libs-3.39.2-2.fc37.x86_64 systemd-libs-251.4-53.fc38.x86_64 tar-2:1.34-3.fc36.x86_64 tzdata-2022c-1.fc38.noarch unzip-6.0-58.fc37.x86_64 util-linux-2.38.1-2.fc38.x86_64 util-linux-core-2.38.1-2.fc38.x86_64 which-2.21-35.fc37.x86_64 xxhash-libs-0.8.1-3.fc37.x86_64 xz-5.2.5-10.fc37.x86_64 xz-libs-5.2.5-10.fc37.x86_64 zip-3.0-33.fc37.x86_64 zlib-1.2.12-5.fc38.x86_64 zstd-1.5.2-3.fc37.x86_64 Complete! Finish: dnf install Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: debugedit-5.0-5.fc37.x86_64 zstd-1.5.2-3.fc37.x86_64 cyrus-sasl-lib-2.1.28-8.fc38.x86_64 nim-srpm-macros-3-7.fc37.noarch libssh-config-0.9.6-5.fc37.noarch coreutils-9.1-7.fc38.x86_64 libeconf-0.4.0-4.fc37.x86_64 libmount-2.38.1-2.fc38.x86_64 setup-2.14.1-2.fc37.noarch libdb-5.3.28-53.fc37.x86_64 pam-libs-1.5.2-14.fc37.x86_64 redhat-rpm-config-230-1.fc38.noarch ghc-srpm-macros-1.5.0-7.fc37.noarch glibc-common-2.36.9000-2.fc38.x86_64 krb5-libs-1.19.2-11.fc37.1.x86_64 gpg-pubkey-5323552a-6112bcdc diffutils-3.8-3.fc37.x86_64 pam-1.5.2-14.fc37.x86_64 fedora-release-common-38-0.3.noarch libacl-2.3.1-4.fc37.x86_64 pcre-8.45-1.fc37.2.x86_64 gzip-1.12-2.fc37.x86_64 libcurl-7.84.0-3.fc38.x86_64 util-linux-2.38.1-2.fc38.x86_64 bash-5.1.16-3.fc37.x86_64 pkgconf-1.8.0-3.fc37.x86_64 kernel-srpm-macros-1.0-15.fc37.noarch crypto-policies-20220824-2.git2187e9c.fc38.noarch jansson-2.13.1-5.fc37.x86_64 lz4-libs-1.9.3-5.fc37.x86_64 elfutils-0.187-8.fc38.x86_64 xxhash-libs-0.8.1-3.fc37.x86_64 which-2.21-35.fc37.x86_64 sed-4.8-11.fc37.x86_64 libunistring-1.0-2.fc37.x86_64 bzip2-libs-1.0.8-12.fc37.x86_64 python-srpm-macros-3.11-4.fc37.noarch ocaml-srpm-macros-7-2.fc37.noarch gmp-6.2.1-3.fc37.x86_64 libgomp-12.2.1-1.fc38.x86_64 libbrotli-1.0.9-9.fc38.x86_64 file-5.42-4.fc38.x86_64 libtasn1-4.18.0-3.fc37.x86_64 xz-libs-5.2.5-10.fc37.x86_64 libstdc++-12.2.1-1.fc38.x86_64 xz-5.2.5-10.fc37.x86_64 rpm-build-libs-4.18.0-0.beta1.4.fc37.x86_64 rpmautospec-rpm-macros-0.3.0-1.fc37.noarch keyutils-libs-1.6.1-5.fc37.x86_64 binutils-gold-2.39-2.fc38.x86_64 rust-srpm-macros-22-1.fc37.noarch zip-3.0-33.fc37.x86_64 libsmartcols-2.38.1-2.fc38.x86_64 findutils-4.9.0-2.fc37.x86_64 libxml2-2.9.14-3.fc37.x86_64 libpsl-0.21.1-6.fc37.x86_64 libnsl2-2.0.0-4.fc37.x86_64 fedora-release-identity-basic-38-0.3.noarch qt5-srpm-macros-5.15.5-2.fc37.noarch libarchive-3.6.1-2.fc37.x86_64 binutils-2.39-2.fc38.x86_64 bzip2-1.0.8-12.fc37.x86_64 elfutils-libs-0.187-8.fc38.x86_64 cpio-2.13-13.fc37.x86_64 libnghttp2-1.49.0-1.fc38.x86_64 libffi-3.4.2-9.fc37.x86_64 util-linux-core-2.38.1-2.fc38.x86_64 rpm-build-4.18.0-0.beta1.4.fc37.x86_64 go-srpm-macros-3.1.0-4.fc37.noarch libgcc-12.2.1-1.fc38.x86_64 p11-kit-0.24.1-3.fc37.x86_64 libverto-0.3.2-4.fc37.x86_64 libcap-2.48-5.fc37.x86_64 file-libs-5.42-4.fc38.x86_64 shadow-utils-4.12.3-1.fc38.x86_64 info-6.8-4.fc37.x86_64 gawk-5.1.1-4.fc37.x86_64 ncurses-base-6.3-3.20220501.fc37.noarch fedora-repos-38-0.3.noarch libsigsegv-2.14-3.fc37.x86_64 cracklib-2.9.7-30.fc38.x86_64 coreutils-common-9.1-7.fc38.x86_64 popt-1.19~rc1-4.fc38.x86_64 elfutils-libelf-0.187-8.fc38.x86_64 libutempter-1.2.1-7.fc37.x86_64 package-notes-srpm-macros-0.5-4.fc38.noarch fedora-release-38-0.3.noarch libselinux-3.4-5.fc37.x86_64 publicsuffix-list-dafsa-20210518-5.fc37.noarch mpfr-4.1.0-10.fc37.x86_64 grep-3.7-4.fc37.x86_64 tzdata-2022c-1.fc38.noarch dwz-0.14-7.fc37.x86_64 pkgconf-m4-1.8.0-3.fc37.noarch libpkgconf-1.8.0-3.fc37.x86_64 efi-srpm-macros-5-6.fc37.noarch pcre2-10.40-1.fc37.1.x86_64 curl-7.84.0-3.fc38.x86_64 libuuid-2.38.1-2.fc38.x86_64 gpg-pubkey-eb10b464-6202d9c6 ed-1.18-2.fc37.x86_64 glibc-gconv-extra-2.36.9000-2.fc38.x86_64 libattr-2.5.1-5.fc37.x86_64 libcom_err-1.46.5-3.fc37.x86_64 ca-certificates-2022.2.54-5.fc37.noarch unzip-6.0-58.fc37.x86_64 p11-kit-trust-0.24.1-3.fc37.x86_64 alternatives-1.19-3.fc37.x86_64 zlib-1.2.12-5.fc38.x86_64 libcap-ng-0.8.3-3.fc37.x86_64 libevent-2.1.12-7.fc37.x86_64 glibc-minimal-langpack-2.36.9000-2.fc38.x86_64 libfdisk-2.38.1-2.fc38.x86_64 fedora-gpg-keys-38-0.3.noarch basesystem-11-14.fc37.noarch libpwquality-1.4.4-11.fc37.x86_64 lua-libs-5.4.4-4.fc37.x86_64 sqlite-libs-3.39.2-2.fc37.x86_64 openblas-srpm-macros-2-12.fc37.noarch ncurses-libs-6.3-3.20220501.fc37.x86_64 openldap-2.6.3-1.fc38.x86_64 libsemanage-3.4-5.fc37.x86_64 authselect-libs-1.4.0-3.fc37.x86_64 openssl-libs-3.0.5-2.fc37.x86_64 fedora-repos-rawhide-38-0.3.noarch libidn2-2.3.3-2.fc37.x86_64 libblkid-2.38.1-2.fc38.x86_64 audit-libs-3.0.9-1.fc38.x86_64 fpc-srpm-macros-1.3-6.fc37.noarch gdbm-libs-1.23-2.fc37.x86_64 elfutils-debuginfod-client-0.187-8.fc38.x86_64 pkgconf-pkg-config-1.8.0-3.fc37.x86_64 lua-srpm-macros-1-7.fc37.noarch rpm-libs-4.18.0-0.beta1.4.fc37.x86_64 authselect-1.4.0-3.fc37.x86_64 rpm-4.18.0-0.beta1.4.fc37.x86_64 patch-2.7.6-17.fc37.x86_64 gnat-srpm-macros-4-16.fc37.noarch libxcrypt-4.4.28-3.fc38.x86_64 filesystem-3.18-2.fc37.x86_64 readline-8.1-7.fc37.x86_64 libssh-0.9.6-5.fc37.x86_64 pcre2-syntax-10.40-1.fc37.1.noarch libtirpc-1.3.3-0.fc37.x86_64 gdb-minimal-12.1-4.fc37.x86_64 fonts-srpm-macros-2.0.5-9.fc38.noarch libzstd-1.5.2-3.fc37.x86_64 libsepol-3.4-3.fc37.x86_64 perl-srpm-macros-1-46.fc37.noarch systemd-libs-251.4-53.fc38.x86_64 elfutils-default-yama-scope-0.187-8.fc38.noarch glibc-2.36.9000-2.fc38.x86_64 tar-1.34-3.fc36.x86_64 ansible-srpm-macros-1-7.fc38.noarch Start: buildsrpm Start: rpmbuild -bs Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1658534400 Wrote: /builddir/build/SRPMS/smoldyn-2.67.3-3.fc38.src.rpm Finish: rpmbuild -bs INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-x86_64-1662051019.772805/root/var/log/dnf.rpm.log /var/lib/mock/fedora-rawhide-x86_64-1662051019.772805/root/var/log/dnf.librepo.log /var/lib/mock/fedora-rawhide-x86_64-1662051019.772805/root/var/log/dnf.log Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-1srwxtv5/smoldyn/smoldyn.spec) Config(child) 0 minutes 56 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running (timeout=108000): unbuffer mock --rebuild /var/lib/copr-rpmbuild/results/smoldyn-2.67.3-3.fc38.src.rpm --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1662051019.772805 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 3.1 starting (python version = 3.10.4, NVR = mock-3.1-1.fc35)... Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/results/smoldyn-2.67.3-3.fc38.src.rpm) Config(fedora-rawhide-x86_64) Start: clean chroot Finish: clean chroot Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1662051019.772805/root. INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1662051019.772805/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 3.1 INFO: Mock Version: 3.1 Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1662051019.772805/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 3.1 INFO: Mock Version: 3.1 Start: dnf update No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 51 kB/s | 3.0 kB 00:00 Copr repository 22 MB/s | 4.6 MB 00:00 fedora 221 kB/s | 14 kB 00:00 fedora 1.2 MB/s | 1.7 MB 00:01 Last metadata expiration check: 0:00:01 ago on Thu Sep 1 16:51:21 2022. Dependencies resolved. Nothing to do. Complete! Finish: dnf update Finish: chroot init Start: build phase for smoldyn-2.67.3-3.fc38.src.rpm Start: build setup for smoldyn-2.67.3-3.fc38.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1658534400 Wrote: /builddir/build/SRPMS/smoldyn-2.67.3-3.fc38.src.rpm No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 49 kB/s | 3.0 kB 00:00 fedora 336 kB/s | 14 kB 00:00 fedora 966 kB/s | 1.7 MB 00:01 Dependencies resolved. ======================================================================================== Package Arch Version Repo Size ======================================================================================== Installing: boost-devel x86_64 1.78.0-9.fc37 fedora 13 M cmake x86_64 3.24.1-1.fc38 fedora 6.6 M freeglut-devel x86_64 3.2.2-2.fc37 fedora 949 k gcc x86_64 12.2.1-1.fc38 fedora 33 M gcc-c++ x86_64 12.2.1-1.fc38 fedora 13 M libXi-devel x86_64 1.8-3.fc37 fedora 116 k libXmu-devel x86_64 1.1.3-9.fc37 fedora 27 k libglvnd-devel x86_64 1:1.5.0-1.fc38 fedora 161 k libtiff-devel x86_64 4.4.0-4.fc37 fedora 546 k make x86_64 1:4.3-11.fc37 fedora 542 k perl-macros noarch 4:5.36.0-492.fc38 fedora 14 k pybind11-devel x86_64 2.10.0-1.fc38 copr_base 159 k python3-devel x86_64 3.11.0~rc1-2.fc38 fedora 268 k python3-flaky noarch 3.7.0-9.fc37 fedora 46 k python3-matplotlib x86_64 3.6.0~rc2-1.fc38 fedora 4.2 M python3-setuptools noarch 65.3.0-1.fc38 copr_base 1.5 M python3-wheel noarch 1:0.37.1-4.fc38 copr_base 92 k xorg-x11-server-Xvfb x86_64 1.20.14-8.fc37 fedora 893 k zlib-devel x86_64 1.2.12-5.fc38 fedora 44 k Installing dependencies: annobin-docs noarch 10.81-1.fc38 fedora 91 k annobin-plugin-gcc x86_64 10.81-1.fc38 fedora 882 k boost x86_64 1.78.0-9.fc37 fedora 14 k boost-atomic x86_64 1.78.0-9.fc37 fedora 20 k boost-chrono x86_64 1.78.0-9.fc37 fedora 27 k boost-container x86_64 1.78.0-9.fc37 fedora 40 k boost-context x86_64 1.78.0-9.fc37 fedora 17 k boost-contract x86_64 1.78.0-9.fc37 fedora 47 k boost-coroutine x86_64 1.78.0-9.fc37 fedora 22 k boost-date-time x86_64 1.78.0-9.fc37 fedora 16 k boost-fiber x86_64 1.78.0-9.fc37 fedora 42 k boost-filesystem x86_64 1.78.0-9.fc37 fedora 66 k boost-graph x86_64 1.78.0-9.fc37 fedora 149 k boost-iostreams x86_64 1.78.0-9.fc37 fedora 42 k boost-json x86_64 1.78.0-9.fc37 fedora 111 k boost-locale x86_64 1.78.0-9.fc37 fedora 218 k boost-log x86_64 1.78.0-9.fc37 fedora 483 k boost-math x86_64 1.78.0-9.fc37 fedora 204 k boost-nowide x86_64 1.78.0-9.fc37 fedora 21 k boost-numpy3 x86_64 1.78.0-9.fc37 fedora 30 k boost-program-options x86_64 1.78.0-9.fc37 fedora 107 k boost-python3 x86_64 1.78.0-9.fc37 fedora 96 k boost-random x86_64 1.78.0-9.fc37 fedora 26 k boost-regex x86_64 1.78.0-9.fc37 fedora 113 k boost-serialization x86_64 1.78.0-9.fc37 fedora 134 k boost-stacktrace x86_64 1.78.0-9.fc37 fedora 30 k boost-system x86_64 1.78.0-9.fc37 fedora 16 k boost-test x86_64 1.78.0-9.fc37 fedora 234 k boost-thread x86_64 1.78.0-9.fc37 fedora 59 k boost-timer x86_64 1.78.0-9.fc37 fedora 26 k boost-type_erasure x86_64 1.78.0-9.fc37 fedora 35 k boost-wave x86_64 1.78.0-9.fc37 fedora 204 k cairo x86_64 1.17.6-2.fc37 fedora 676 k cmake-data noarch 3.24.1-1.fc38 fedora 2.1 M cmake-filesystem x86_64 3.24.1-1.fc38 fedora 16 k cmake-rpm-macros noarch 3.24.1-1.fc38 fedora 16 k cpp x86_64 12.2.1-1.fc38 fedora 11 M dejavu-sans-fonts noarch 2.37-19.fc37 fedora 1.3 M emacs-filesystem noarch 1:28.1-3.fc37 fedora 9.5 k expat x86_64 2.4.8-2.fc37 fedora 110 k flexiblas x86_64 3.2.1-2.fc37 fedora 33 k flexiblas-netlib x86_64 3.2.1-2.fc37 fedora 3.1 M flexiblas-openblas-openmp x86_64 3.2.1-2.fc37 fedora 17 k fontconfig x86_64 2.14.0-2.fc37 fedora 288 k fonts-filesystem noarch 1:2.0.5-9.fc38 fedora 7.8 k freeglut x86_64 3.2.2-2.fc37 fedora 150 k freetype x86_64 2.12.1-3.fc37 fedora 407 k fribidi x86_64 1.0.12-2.fc37 fedora 89 k gc x86_64 8.0.6-4.fc37 fedora 103 k gcc-plugin-annobin x86_64 12.2.1-1.fc38 fedora 51 k gl-manpages noarch 1.1-25.20190306.fc37 fedora 1.2 M glib2 x86_64 2.73.3-2.fc38 fedora 2.7 M glibc-devel x86_64 2.36.9000-2.fc38 fedora 27 k glibc-headers-x86 noarch 2.36.9000-2.fc38 fedora 504 k gnutls x86_64 3.7.7-1.fc37 fedora 1.1 M google-noto-fonts-common noarch 20201206^1.git0c78c8329-2.fc37 fedora 17 k google-noto-sans-vf-fonts noarch 20201206^1.git0c78c8329-2.fc37 fedora 728 k graphite2 x86_64 1.3.14-10.fc37 fedora 95 k groff-base x86_64 1.22.4-10.fc37 fedora 1.1 M guile22 x86_64 2.2.7-6.fc37 fedora 6.5 M harfbuzz x86_64 5.1.0-2.fc37 fedora 820 k hwdata noarch 0.361-2.fc37 fedora 1.5 M jbigkit-libs x86_64 2.1-24.fc37 fedora 53 k jsoncpp x86_64 1.9.5-3.fc37 fedora 98 k kernel-headers x86_64 6.0.0-0.rc3.git0.1.fc38 fedora 1.5 M langpacks-core-font-en noarch 3.0-26.fc37 fedora 10 k lcms2 x86_64 2.13.1-2.fc37 fedora 175 k libICE x86_64 1.0.10-9.fc37 fedora 71 k libICE-devel x86_64 1.0.10-9.fc37 fedora 46 k libSM x86_64 1.2.3-11.fc37 fedora 42 k libSM-devel x86_64 1.2.3-11.fc37 fedora 12 k libX11 x86_64 1.8.1-2.fc38 fedora 648 k libX11-common noarch 1.8.1-2.fc38 fedora 182 k libX11-devel x86_64 1.8.1-2.fc38 fedora 1.0 M libX11-xcb x86_64 1.8.1-2.fc38 fedora 12 k libXau x86_64 1.0.10-1.fc38 fedora 31 k libXau-devel x86_64 1.0.10-1.fc38 fedora 13 k libXdmcp x86_64 1.1.3-9.fc37 fedora 35 k libXext x86_64 1.3.4-9.fc37 fedora 39 k libXext-devel x86_64 1.3.4-9.fc37 fedora 86 k libXfixes x86_64 6.0.0-4.fc37 fedora 19 k libXfixes-devel x86_64 6.0.0-4.fc37 fedora 12 k libXfont2 x86_64 2.0.3-13.fc37 fedora 143 k libXft x86_64 2.3.4-3.fc37 fedora 62 k libXi x86_64 1.8-3.fc37 fedora 39 k libXmu x86_64 1.1.3-9.fc37 fedora 74 k libXrender x86_64 0.9.10-17.fc37 fedora 27 k libXt x86_64 1.2.1-3.fc37 fedora 180 k libXt-devel x86_64 1.2.1-3.fc37 fedora 460 k libXxf86vm x86_64 1.1.4-19.fc37 fedora 18 k libb2 x86_64 0.98.1-7.fc37 fedora 25 k libdrm x86_64 2.4.112-1.fc38 fedora 157 k libdrm-devel x86_64 2.4.112-1.fc38 fedora 159 k libfontenc x86_64 1.1.4-4.fc37 fedora 31 k libgfortran x86_64 12.2.1-1.fc38 fedora 898 k libglvnd x86_64 1:1.5.0-1.fc38 fedora 133 k libglvnd-core-devel x86_64 1:1.5.0-1.fc38 fedora 17 k libglvnd-egl x86_64 1:1.5.0-1.fc38 fedora 35 k libglvnd-gles x86_64 1:1.5.0-1.fc38 fedora 31 k libglvnd-glx x86_64 1:1.5.0-1.fc38 fedora 140 k libglvnd-opengl x86_64 1:1.5.0-1.fc38 fedora 42 k libicu x86_64 71.1-1.fc37 fedora 10 M libicu-devel x86_64 71.1-1.fc37 fedora 916 k libimagequant x86_64 2.17.0-3.fc37 fedora 62 k libjpeg-turbo x86_64 2.1.4-1.fc38 fedora 181 k libmpc x86_64 1.2.1-5.fc37 fedora 61 k libpciaccess x86_64 0.16-7.fc37 fedora 27 k libpciaccess-devel x86_64 0.16-7.fc37 fedora 12 k libpng x86_64 2:1.6.37-13.fc37 fedora 119 k libqhull_r x86_64 1:7.2.1-10.fc37 fedora 169 k libquadmath x86_64 12.2.1-1.fc38 fedora 199 k libquadmath-devel x86_64 12.2.1-1.fc38 fedora 41 k libraqm x86_64 0.8.0-2.fc37 fedora 20 k libstdc++-devel x86_64 12.2.1-1.fc38 fedora 2.5 M libtiff x86_64 4.4.0-4.fc37 fedora 197 k libtool-ltdl x86_64 2.4.7-2.fc37 fedora 37 k libunwind x86_64 1.6.2-3.fc37 fedora 67 k libuv x86_64 1:1.44.2-2.fc37 fedora 151 k libwayland-client x86_64 1.21.0-1.fc37 fedora 33 k libwayland-server x86_64 1.21.0-1.fc37 fedora 41 k libwebp x86_64 1.2.4-1.fc37 fedora 278 k libxcb x86_64 1.13.1-10.fc37 fedora 231 k libxcb-devel x86_64 1.13.1-10.fc37 fedora 1.4 M libxcrypt-devel x86_64 4.4.28-3.fc38 fedora 28 k libxkbfile x86_64 1.1.0-9.fc37 fedora 88 k libxshmfence x86_64 1.3-11.fc37 fedora 12 k libxslt x86_64 1.1.37-1.fc38 fedora 184 k mesa-libEGL x86_64 22.2.0~rc3-1.fc38 fedora 125 k mesa-libGL x86_64 22.2.0~rc3-1.fc38 fedora 176 k mesa-libGL-devel x86_64 22.2.0~rc3-1.fc38 fedora 35 k mesa-libGLU x86_64 9.0.1-7.fc37 fedora 153 k mesa-libGLU-devel x86_64 9.0.1-7.fc37 fedora 13 k mesa-libgbm x86_64 22.2.0~rc3-1.fc38 fedora 45 k mesa-libglapi x86_64 22.2.0~rc3-1.fc38 fedora 54 k mpdecimal x86_64 2.5.1-4.fc37 fedora 102 k ncurses x86_64 6.3-3.20220501.fc37 fedora 409 k nettle x86_64 3.8-2.fc37 fedora 414 k openblas x86_64 0.3.21-3.fc38 fedora 35 k openblas-openmp x86_64 0.3.21-3.fc38 fedora 5.1 M openjpeg2 x86_64 2.5.0-2.fc37 fedora 178 k perl-Carp noarch 1.52-489.fc37 fedora 29 k perl-Class-Struct noarch 0.66-492.fc38 fedora 25 k perl-DynaLoader x86_64 1.52-492.fc38 fedora 29 k perl-Encode x86_64 4:3.19-492.fc38 fedora 1.7 M perl-Errno x86_64 1.36-492.fc38 fedora 18 k perl-Exporter noarch 5.77-489.fc37 fedora 31 k perl-Fcntl x86_64 1.15-492.fc38 fedora 24 k perl-File-Basename noarch 2.85-492.fc38 fedora 20 k perl-File-Path noarch 2.18-489.fc37 fedora 35 k perl-File-Temp noarch 1:0.231.100-489.fc37 fedora 59 k perl-File-stat noarch 1.12-492.fc38 fedora 20 k perl-Getopt-Long noarch 1:2.52-489.fc37 fedora 60 k perl-Getopt-Std noarch 1.13-492.fc38 fedora 19 k perl-HTTP-Tiny noarch 0.082-1.fc37 fedora 55 k perl-IO x86_64 1.50-492.fc38 fedora 95 k perl-IPC-Open3 noarch 1.22-492.fc38 fedora 26 k perl-MIME-Base64 x86_64 3.16-489.fc37 fedora 30 k perl-POSIX x86_64 2.03-492.fc38 fedora 101 k perl-PathTools x86_64 3.84-489.fc37 fedora 89 k perl-Pod-Escapes noarch 1:1.07-489.fc37 fedora 20 k perl-Pod-Perldoc noarch 3.28.01-490.fc37 fedora 90 k perl-Pod-Simple noarch 1:3.43-490.fc37 fedora 225 k perl-Pod-Usage noarch 4:2.03-3.fc37 fedora 40 k perl-Scalar-List-Utils x86_64 5:1.63-489.fc38 fedora 72 k perl-SelectSaver noarch 1.02-492.fc38 fedora 15 k perl-Socket x86_64 4:2.036-1.fc38 fedora 55 k perl-Storable x86_64 1:3.26-489.fc37 fedora 97 k perl-Symbol noarch 1.09-492.fc38 fedora 17 k perl-Term-ANSIColor noarch 5.01-490.fc37 fedora 48 k perl-Term-Cap noarch 1.17-489.fc37 fedora 22 k perl-Text-ParseWords noarch 3.31-489.fc37 fedora 16 k perl-Text-Tabs+Wrap noarch 2021.0814-489.fc37 fedora 22 k perl-Time-Local noarch 2:1.300-489.fc37 fedora 33 k perl-constant noarch 1.33-490.fc37 fedora 23 k perl-if noarch 0.61.000-492.fc38 fedora 17 k perl-interpreter x86_64 4:5.36.0-492.fc38 fedora 75 k perl-libs x86_64 4:5.36.0-492.fc38 fedora 2.2 M perl-mro x86_64 1.26-492.fc38 fedora 32 k perl-overload noarch 1.35-492.fc38 fedora 49 k perl-overloading noarch 0.02-492.fc38 fedora 16 k perl-parent noarch 1:0.238-489.fc37 fedora 14 k perl-podlators noarch 1:4.14-489.fc37 fedora 116 k perl-subs noarch 1.04-492.fc38 fedora 15 k perl-vars noarch 1.05-492.fc38 fedora 16 k pixman x86_64 0.40.0-6.fc37 fedora 277 k pyproject-rpm-macros noarch 1.3.3-1.fc38 fedora 41 k python-pip-wheel noarch 22.2.2-1.fc38 copr_base 1.4 M python-rpm-macros noarch 3.11-4.fc37 fedora 18 k python-setuptools-wheel noarch 65.3.0-1.fc38 copr_base 715 k python3 x86_64 3.11.0~rc1-2.fc38 fedora 27 k python3-appdirs noarch 1.4.4-7.fc38 copr_base 25 k python3-brotli x86_64 1.0.9-9.fc38 copr_base 320 k python3-cairo x86_64 1.21.0-3.fc38 copr_base 125 k python3-contourpy x86_64 1.0.4-2.fc37 fedora 222 k python3-cycler noarch 0.11.0-6.fc37 fedora 21 k python3-dateutil noarch 1:2.8.2-4.fc38 copr_base 350 k python3-fonttools x86_64 4.37.1-1.fc38 copr_base 2.3 M python3-fs noarch 2.4.11-12.fc38 copr_base 266 k python3-kiwisolver x86_64 1.4.4-1.fc37 fedora 65 k python3-libs x86_64 3.11.0~rc1-2.fc38 fedora 9.6 M python3-lxml x86_64 4.7.1-6.fc38 copr_base 1.2 M python3-matplotlib-data noarch 3.6.0~rc2-1.fc38 fedora 543 k python3-matplotlib-data-fonts noarch 3.6.0~rc2-1.fc38 fedora 2.3 M python3-matplotlib-tk x86_64 3.6.0~rc2-1.fc38 fedora 52 k python3-munkres noarch 1.1.2-13.fc38 copr_base 26 k python3-numpy x86_64 1:1.22.0-7.fc38 copr_base 7.1 M python3-numpy-f2py x86_64 1:1.22.0-7.fc38 copr_base 384 k python3-olefile noarch 0.46-18.fc38 copr_base 68 k python3-packaging noarch 21.3-7.fc38 fedora 98 k python3-pillow x86_64 9.2.0-2.fc38 copr_base 866 k python3-pillow-tk x86_64 9.2.0-2.fc38 copr_base 31 k python3-pyparsing noarch 3.0.9-2.fc38 copr_base 255 k python3-pytz noarch 2022.2-1.fc38 copr_base 55 k python3-rpm-generators noarch 13-2.fc37 fedora 30 k python3-rpm-macros noarch 3.11-4.fc37 fedora 15 k python3-scipy x86_64 1.8.1-6.fc37 fedora 20 M python3-six noarch 1.16.0-8.fc37 fedora 42 k python3-tkinter x86_64 3.11.0~rc1-2.fc38 fedora 417 k rhash x86_64 1.4.2-3.fc37 fedora 185 k tcl x86_64 1:8.6.12-3.fc37 fedora 1.1 M tk x86_64 1:8.6.12-3.fc37 fedora 1.6 M valgrind x86_64 1:3.19.0-4.fc37 fedora 4.8 M valgrind-devel x86_64 1:3.19.0-4.fc37 fedora 49 k vim-filesystem noarch 2:9.0.327-1.fc38 fedora 20 k xkbcomp x86_64 1.4.5-4.fc37 fedora 100 k xkeyboard-config noarch 2.36-2.fc37 fedora 957 k xml-common noarch 0.6.3-59.fc37 fedora 31 k xorg-x11-proto-devel noarch 2022.2-2.fc38 fedora 299 k xorg-x11-server-common x86_64 1.20.14-8.fc37 fedora 34 k xorg-x11-xauth x86_64 1:1.1.2-2.fc37 fedora 36 k Transaction Summary ======================================================================================== Install 249 Packages Total size: 209 M Total download size: 194 M Installed size: 876 M Downloading Packages: [SKIPPED] python-pip-wheel-22.2.2-1.fc38.noarch.rpm: Already downloaded [SKIPPED] python-setuptools-wheel-65.3.0-1.fc38.noarch.rpm: Already downloaded [SKIPPED] python3-pyparsing-3.0.9-2.fc38.noarch.rpm: Already downloaded [SKIPPED] python3-setuptools-65.3.0-1.fc38.noarch.rpm: Already downloaded [SKIPPED] expat-2.4.8-2.fc37.x86_64.rpm: Already downloaded [SKIPPED] libb2-0.98.1-7.fc37.x86_64.rpm: Already downloaded [SKIPPED] mpdecimal-2.5.1-4.fc37.x86_64.rpm: Already downloaded [SKIPPED] pyproject-rpm-macros-1.3.3-1.fc38.noarch.rpm: Already downloaded [SKIPPED] python-rpm-macros-3.11-4.fc37.noarch.rpm: Already downloaded [SKIPPED] python3-3.11.0~rc1-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] python3-devel-3.11.0~rc1-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] python3-libs-3.11.0~rc1-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] python3-packaging-21.3-7.fc38.noarch.rpm: Already downloaded [SKIPPED] python3-rpm-generators-13-2.fc37.noarch.rpm: Already downloaded [SKIPPED] python3-rpm-macros-3.11-4.fc37.noarch.rpm: Already downloaded (16/249): python3-appdirs-1.4.4-7.fc38.noarch.r 284 kB/s | 25 kB 00:00 (17/249): python3-brotli-1.0.9-9.fc38.x86_64.rp 2.8 MB/s | 320 kB 00:00 (18/249): python3-cairo-1.21.0-3.fc38.x86_64.rp 4.4 MB/s | 125 kB 00:00 (19/249): pybind11-devel-2.10.0-1.fc38.x86_64.r 1.2 MB/s | 159 kB 00:00 (20/249): python3-dateutil-2.8.2-4.fc38.noarch. 15 MB/s | 350 kB 00:00 (21/249): python3-fs-2.4.11-12.fc38.noarch.rpm 11 MB/s | 266 kB 00:00 (22/249): python3-lxml-4.7.1-6.fc38.x86_64.rpm 41 MB/s | 1.2 MB 00:00 (23/249): python3-munkres-1.1.2-13.fc38.noarch. 936 kB/s | 26 kB 00:00 (24/249): python3-fonttools-4.37.1-1.fc38.x86_6 34 MB/s | 2.3 MB 00:00 (25/249): python3-numpy-f2py-1.22.0-7.fc38.x86_ 24 MB/s | 384 kB 00:00 (26/249): python3-olefile-0.46-18.fc38.noarch.r 3.9 MB/s | 68 kB 00:00 (27/249): python3-pillow-tk-9.2.0-2.fc38.x86_64 2.2 MB/s | 31 kB 00:00 (28/249): python3-pillow-9.2.0-2.fc38.x86_64.rp 31 MB/s | 866 kB 00:00 (29/249): python3-pytz-2022.2-1.fc38.noarch.rpm 4.5 MB/s | 55 kB 00:00 (30/249): python3-wheel-0.37.1-4.fc38.noarch.rp 7.6 MB/s | 92 kB 00:00 (31/249): annobin-docs-10.81-1.fc38.noarch.rpm 1.0 MB/s | 91 kB 00:00 (32/249): boost-1.78.0-9.fc37.x86_64.rpm 740 kB/s | 14 kB 00:00 (33/249): boost-atomic-1.78.0-9.fc37.x86_64.rpm 966 kB/s | 20 kB 00:00 (34/249): boost-chrono-1.78.0-9.fc37.x86_64.rpm 1.3 MB/s | 27 kB 00:00 (35/249): annobin-plugin-gcc-10.81-1.fc38.x86_6 6.1 MB/s | 882 kB 00:00 (36/249): boost-container-1.78.0-9.fc37.x86_64. 1.8 MB/s | 40 kB 00:00 (37/249): boost-context-1.78.0-9.fc37.x86_64.rp 911 kB/s | 17 kB 00:00 (38/249): python3-numpy-1.22.0-7.fc38.x86_64.rp 30 MB/s | 7.1 MB 00:00 (39/249): boost-coroutine-1.78.0-9.fc37.x86_64. 1.1 MB/s | 22 kB 00:00 (40/249): boost-contract-1.78.0-9.fc37.x86_64.r 2.1 MB/s | 47 kB 00:00 (41/249): boost-fiber-1.78.0-9.fc37.x86_64.rpm 1.8 MB/s | 42 kB 00:00 (42/249): boost-date-time-1.78.0-9.fc37.x86_64. 297 kB/s | 16 kB 00:00 (43/249): boost-filesystem-1.78.0-9.fc37.x86_64 2.6 MB/s | 66 kB 00:00 (44/249): boost-iostreams-1.78.0-9.fc37.x86_64. 2.0 MB/s | 42 kB 00:00 (45/249): boost-json-1.78.0-9.fc37.x86_64.rpm 3.8 MB/s | 111 kB 00:00 (46/249): boost-graph-1.78.0-9.fc37.x86_64.rpm 2.4 MB/s | 149 kB 00:00 (47/249): boost-locale-1.78.0-9.fc37.x86_64.rpm 4.0 MB/s | 218 kB 00:00 (48/249): boost-log-1.78.0-9.fc37.x86_64.rpm 7.6 MB/s | 483 kB 00:00 (49/249): boost-math-1.78.0-9.fc37.x86_64.rpm 7.0 MB/s | 204 kB 00:00 (50/249): boost-nowide-1.78.0-9.fc37.x86_64.rpm 1.1 MB/s | 21 kB 00:00 (51/249): boost-numpy3-1.78.0-9.fc37.x86_64.rpm 1.3 MB/s | 30 kB 00:00 (52/249): boost-program-options-1.78.0-9.fc37.x 4.1 MB/s | 107 kB 00:00 (53/249): boost-python3-1.78.0-9.fc37.x86_64.rp 3.8 MB/s | 96 kB 00:00 (54/249): boost-random-1.78.0-9.fc37.x86_64.rpm 1.2 MB/s | 26 kB 00:00 (55/249): boost-devel-1.78.0-9.fc37.x86_64.rpm 52 MB/s | 13 MB 00:00 (56/249): boost-regex-1.78.0-9.fc37.x86_64.rpm 3.7 MB/s | 113 kB 00:00 (57/249): boost-serialization-1.78.0-9.fc37.x86 4.6 MB/s | 134 kB 00:00 (58/249): boost-stacktrace-1.78.0-9.fc37.x86_64 1.6 MB/s | 30 kB 00:00 (59/249): boost-system-1.78.0-9.fc37.x86_64.rpm 863 kB/s | 16 kB 00:00 (60/249): boost-test-1.78.0-9.fc37.x86_64.rpm 10 MB/s | 234 kB 00:00 (61/249): boost-timer-1.78.0-9.fc37.x86_64.rpm 1.3 MB/s | 26 kB 00:00 (62/249): boost-thread-1.78.0-9.fc37.x86_64.rpm 2.9 MB/s | 59 kB 00:00 (63/249): boost-type_erasure-1.78.0-9.fc37.x86_ 1.8 MB/s | 35 kB 00:00 (64/249): boost-wave-1.78.0-9.fc37.x86_64.rpm 8.0 MB/s | 204 kB 00:00 (65/249): cairo-1.17.6-2.fc37.x86_64.rpm 19 MB/s | 676 kB 00:00 (66/249): cmake-filesystem-3.24.1-1.fc38.x86_64 779 kB/s | 16 kB 00:00 (67/249): cmake-rpm-macros-3.24.1-1.fc38.noarch 674 kB/s | 16 kB 00:00 (68/249): cmake-data-3.24.1-1.fc38.noarch.rpm 16 MB/s | 2.1 MB 00:00 (69/249): cmake-3.24.1-1.fc38.x86_64.rpm 38 MB/s | 6.6 MB 00:00 (70/249): dejavu-sans-fonts-2.37-19.fc37.noarch 17 MB/s | 1.3 MB 00:00 (71/249): flexiblas-3.2.1-2.fc37.x86_64.rpm 1.6 MB/s | 33 kB 00:00 (72/249): cpp-12.2.1-1.fc38.x86_64.rpm 52 MB/s | 11 MB 00:00 (73/249): emacs-filesystem-28.1-3.fc37.noarch.r 82 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xorg-x11-server-Xvfb-1.20.14-8.fc37. 13 MB/s | 893 kB 00:00 (245/249): xorg-x11-server-common-1.20.14-8.fc3 1.4 MB/s | 34 kB 00:00 (246/249): valgrind-3.19.0-4.fc37.x86_64.rpm 11 MB/s | 4.8 MB 00:00 (247/249): xorg-x11-xauth-1.1.2-2.fc37.x86_64.r 1.5 MB/s | 36 kB 00:00 (248/249): zlib-devel-1.2.12-5.fc38.x86_64.rpm 2.3 MB/s | 44 kB 00:00 (249/249): python3-scipy-1.8.1-6.fc37.x86_64.rp 13 MB/s | 20 MB 00:01 -------------------------------------------------------------------------------- Total 26 MB/s | 194 MB 00:07 Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Preparing : 1/1 Installing : xorg-x11-proto-devel-2022.2-2.fc38.noarch 1/249 Installing : boost-system-1.78.0-9.fc37.x86_64 2/249 Installing : boost-chrono-1.78.0-9.fc37.x86_64 3/249 Installing : boost-thread-1.78.0-9.fc37.x86_64 4/249 Installing : libicu-71.1-1.fc37.x86_64 5/249 Installing : libglvnd-1:1.5.0-1.fc38.x86_64 6/249 Installing : expat-2.4.8-2.fc37.x86_64 7/249 Installing : libXau-1.0.10-1.fc38.x86_64 8/249 Installing : libxcb-1.13.1-10.fc37.x86_64 9/249 Installing : cmake-filesystem-3.24.1-1.fc38.x86_64 10/249 Installing : boost-regex-1.78.0-9.fc37.x86_64 11/249 Installing : python-rpm-macros-3.11-4.fc37.noarch 12/249 Installing : pixman-0.40.0-6.fc37.x86_64 13/249 Installing : mesa-libglapi-22.2.0~rc3-1.fc38.x86_64 14/249 Installing : libquadmath-12.2.1-1.fc38.x86_64 15/249 Installing : libgfortran-12.2.1-1.fc38.x86_64 16/249 Installing : libmpc-1.2.1-5.fc37.x86_64 17/249 Installing : libX11-xcb-1.8.1-2.fc38.x86_64 18/249 Installing : 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84/249 Verifying : guile22-2.2.7-6.fc37.x86_64 85/249 Verifying : harfbuzz-5.1.0-2.fc37.x86_64 86/249 Verifying : hwdata-0.361-2.fc37.noarch 87/249 Verifying : jbigkit-libs-2.1-24.fc37.x86_64 88/249 Verifying : jsoncpp-1.9.5-3.fc37.x86_64 89/249 Verifying : kernel-headers-6.0.0-0.rc3.git0.1.fc38.x86_64 90/249 Verifying : langpacks-core-font-en-3.0-26.fc37.noarch 91/249 Verifying : lcms2-2.13.1-2.fc37.x86_64 92/249 Verifying : libICE-1.0.10-9.fc37.x86_64 93/249 Verifying : libICE-devel-1.0.10-9.fc37.x86_64 94/249 Verifying : libSM-1.2.3-11.fc37.x86_64 95/249 Verifying : libSM-devel-1.2.3-11.fc37.x86_64 96/249 Verifying : libX11-1.8.1-2.fc38.x86_64 97/249 Verifying : libX11-common-1.8.1-2.fc38.noarch 98/249 Verifying : libX11-devel-1.8.1-2.fc38.x86_64 99/249 Verifying : libX11-xcb-1.8.1-2.fc38.x86_64 100/249 Verifying : libXau-1.0.10-1.fc38.x86_64 101/249 Verifying : libXau-devel-1.0.10-1.fc38.x86_64 102/249 Verifying : libXdmcp-1.1.3-9.fc37.x86_64 103/249 Verifying : 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Verifying : mesa-libGLU-9.0.1-7.fc37.x86_64 161/249 Verifying : mesa-libGLU-devel-9.0.1-7.fc37.x86_64 162/249 Verifying : mesa-libgbm-22.2.0~rc3-1.fc38.x86_64 163/249 Verifying : mesa-libglapi-22.2.0~rc3-1.fc38.x86_64 164/249 Verifying : mpdecimal-2.5.1-4.fc37.x86_64 165/249 Verifying : ncurses-6.3-3.20220501.fc37.x86_64 166/249 Verifying : nettle-3.8-2.fc37.x86_64 167/249 Verifying : openblas-0.3.21-3.fc38.x86_64 168/249 Verifying : openblas-openmp-0.3.21-3.fc38.x86_64 169/249 Verifying : openjpeg2-2.5.0-2.fc37.x86_64 170/249 Verifying : perl-Carp-1.52-489.fc37.noarch 171/249 Verifying : perl-Class-Struct-0.66-492.fc38.noarch 172/249 Verifying : perl-DynaLoader-1.52-492.fc38.x86_64 173/249 Verifying : perl-Encode-4:3.19-492.fc38.x86_64 174/249 Verifying : perl-Errno-1.36-492.fc38.x86_64 175/249 Verifying : perl-Exporter-5.77-489.fc37.noarch 176/249 Verifying : perl-Fcntl-1.15-492.fc38.x86_64 177/249 Verifying : perl-File-Basename-2.85-492.fc38.noarch 178/249 Verifying : perl-File-Path-2.18-489.fc37.noarch 179/249 Verifying : perl-File-Temp-1:0.231.100-489.fc37.noarch 180/249 Verifying : perl-File-stat-1.12-492.fc38.noarch 181/249 Verifying : perl-Getopt-Long-1:2.52-489.fc37.noarch 182/249 Verifying : perl-Getopt-Std-1.13-492.fc38.noarch 183/249 Verifying : perl-HTTP-Tiny-0.082-1.fc37.noarch 184/249 Verifying : perl-IO-1.50-492.fc38.x86_64 185/249 Verifying : perl-IPC-Open3-1.22-492.fc38.noarch 186/249 Verifying : perl-MIME-Base64-3.16-489.fc37.x86_64 187/249 Verifying : perl-POSIX-2.03-492.fc38.x86_64 188/249 Verifying : perl-PathTools-3.84-489.fc37.x86_64 189/249 Verifying : perl-Pod-Escapes-1:1.07-489.fc37.noarch 190/249 Verifying : perl-Pod-Perldoc-3.28.01-490.fc37.noarch 191/249 Verifying : perl-Pod-Simple-1:3.43-490.fc37.noarch 192/249 Verifying : perl-Pod-Usage-4:2.03-3.fc37.noarch 193/249 Verifying : perl-Scalar-List-Utils-5:1.63-489.fc38.x86_64 194/249 Verifying : perl-SelectSaver-1.02-492.fc38.noarch 195/249 Verifying : perl-Socket-4:2.036-1.fc38.x86_64 196/249 Verifying : perl-Storable-1:3.26-489.fc37.x86_64 197/249 Verifying : perl-Symbol-1.09-492.fc38.noarch 198/249 Verifying : perl-Term-ANSIColor-5.01-490.fc37.noarch 199/249 Verifying : perl-Term-Cap-1.17-489.fc37.noarch 200/249 Verifying : perl-Text-ParseWords-3.31-489.fc37.noarch 201/249 Verifying : perl-Text-Tabs+Wrap-2021.0814-489.fc37.noarch 202/249 Verifying : perl-Time-Local-2:1.300-489.fc37.noarch 203/249 Verifying : perl-constant-1.33-490.fc37.noarch 204/249 Verifying : perl-if-0.61.000-492.fc38.noarch 205/249 Verifying : perl-interpreter-4:5.36.0-492.fc38.x86_64 206/249 Verifying : perl-libs-4:5.36.0-492.fc38.x86_64 207/249 Verifying : perl-macros-4:5.36.0-492.fc38.noarch 208/249 Verifying : perl-mro-1.26-492.fc38.x86_64 209/249 Verifying : perl-overload-1.35-492.fc38.noarch 210/249 Verifying : perl-overloading-0.02-492.fc38.noarch 211/249 Verifying : perl-parent-1:0.238-489.fc37.noarch 212/249 Verifying : perl-podlators-1:4.14-489.fc37.noarch 213/249 Verifying : perl-subs-1.04-492.fc38.noarch 214/249 Verifying : perl-vars-1.05-492.fc38.noarch 215/249 Verifying : pixman-0.40.0-6.fc37.x86_64 216/249 Verifying : pyproject-rpm-macros-1.3.3-1.fc38.noarch 217/249 Verifying : python-rpm-macros-3.11-4.fc37.noarch 218/249 Verifying : python3-3.11.0~rc1-2.fc38.x86_64 219/249 Verifying : python3-contourpy-1.0.4-2.fc37.x86_64 220/249 Verifying : python3-cycler-0.11.0-6.fc37.noarch 221/249 Verifying : python3-devel-3.11.0~rc1-2.fc38.x86_64 222/249 Verifying : python3-flaky-3.7.0-9.fc37.noarch 223/249 Verifying : python3-kiwisolver-1.4.4-1.fc37.x86_64 224/249 Verifying : python3-libs-3.11.0~rc1-2.fc38.x86_64 225/249 Verifying : python3-matplotlib-3.6.0~rc2-1.fc38.x86_64 226/249 Verifying : python3-matplotlib-data-3.6.0~rc2-1.fc38.noarch 227/249 Verifying : python3-matplotlib-data-fonts-3.6.0~rc2-1.fc38.n 228/249 Verifying : python3-matplotlib-tk-3.6.0~rc2-1.fc38.x86_64 229/249 Verifying : python3-packaging-21.3-7.fc38.noarch 230/249 Verifying : python3-rpm-generators-13-2.fc37.noarch 231/249 Verifying : python3-rpm-macros-3.11-4.fc37.noarch 232/249 Verifying : python3-scipy-1.8.1-6.fc37.x86_64 233/249 Verifying : python3-six-1.16.0-8.fc37.noarch 234/249 Verifying : python3-tkinter-3.11.0~rc1-2.fc38.x86_64 235/249 Verifying : rhash-1.4.2-3.fc37.x86_64 236/249 Verifying : tcl-1:8.6.12-3.fc37.x86_64 237/249 Verifying : tk-1:8.6.12-3.fc37.x86_64 238/249 Verifying : valgrind-1:3.19.0-4.fc37.x86_64 239/249 Verifying : valgrind-devel-1:3.19.0-4.fc37.x86_64 240/249 Verifying : vim-filesystem-2:9.0.327-1.fc38.noarch 241/249 Verifying : xkbcomp-1.4.5-4.fc37.x86_64 242/249 Verifying : xkeyboard-config-2.36-2.fc37.noarch 243/249 Verifying : xml-common-0.6.3-59.fc37.noarch 244/249 Verifying : xorg-x11-proto-devel-2022.2-2.fc38.noarch 245/249 Verifying : xorg-x11-server-Xvfb-1.20.14-8.fc37.x86_64 246/249 Verifying : xorg-x11-server-common-1.20.14-8.fc37.x86_64 247/249 Verifying : xorg-x11-xauth-1:1.1.2-2.fc37.x86_64 248/249 Verifying : zlib-devel-1.2.12-5.fc38.x86_64 249/249 Installed: annobin-docs-10.81-1.fc38.noarch annobin-plugin-gcc-10.81-1.fc38.x86_64 boost-1.78.0-9.fc37.x86_64 boost-atomic-1.78.0-9.fc37.x86_64 boost-chrono-1.78.0-9.fc37.x86_64 boost-container-1.78.0-9.fc37.x86_64 boost-context-1.78.0-9.fc37.x86_64 boost-contract-1.78.0-9.fc37.x86_64 boost-coroutine-1.78.0-9.fc37.x86_64 boost-date-time-1.78.0-9.fc37.x86_64 boost-devel-1.78.0-9.fc37.x86_64 boost-fiber-1.78.0-9.fc37.x86_64 boost-filesystem-1.78.0-9.fc37.x86_64 boost-graph-1.78.0-9.fc37.x86_64 boost-iostreams-1.78.0-9.fc37.x86_64 boost-json-1.78.0-9.fc37.x86_64 boost-locale-1.78.0-9.fc37.x86_64 boost-log-1.78.0-9.fc37.x86_64 boost-math-1.78.0-9.fc37.x86_64 boost-nowide-1.78.0-9.fc37.x86_64 boost-numpy3-1.78.0-9.fc37.x86_64 boost-program-options-1.78.0-9.fc37.x86_64 boost-python3-1.78.0-9.fc37.x86_64 boost-random-1.78.0-9.fc37.x86_64 boost-regex-1.78.0-9.fc37.x86_64 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gl-manpages-1.1-25.20190306.fc37.noarch glib2-2.73.3-2.fc38.x86_64 glibc-devel-2.36.9000-2.fc38.x86_64 glibc-headers-x86-2.36.9000-2.fc38.noarch gnutls-3.7.7-1.fc37.x86_64 google-noto-fonts-common-20201206^1.git0c78c8329-2.fc37.noarch google-noto-sans-vf-fonts-20201206^1.git0c78c8329-2.fc37.noarch graphite2-1.3.14-10.fc37.x86_64 groff-base-1.22.4-10.fc37.x86_64 guile22-2.2.7-6.fc37.x86_64 harfbuzz-5.1.0-2.fc37.x86_64 hwdata-0.361-2.fc37.noarch jbigkit-libs-2.1-24.fc37.x86_64 jsoncpp-1.9.5-3.fc37.x86_64 kernel-headers-6.0.0-0.rc3.git0.1.fc38.x86_64 langpacks-core-font-en-3.0-26.fc37.noarch lcms2-2.13.1-2.fc37.x86_64 libICE-1.0.10-9.fc37.x86_64 libICE-devel-1.0.10-9.fc37.x86_64 libSM-1.2.3-11.fc37.x86_64 libSM-devel-1.2.3-11.fc37.x86_64 libX11-1.8.1-2.fc38.x86_64 libX11-common-1.8.1-2.fc38.noarch libX11-devel-1.8.1-2.fc38.x86_64 libX11-xcb-1.8.1-2.fc38.x86_64 libXau-1.0.10-1.fc38.x86_64 libXau-devel-1.0.10-1.fc38.x86_64 libXdmcp-1.1.3-9.fc37.x86_64 libXext-1.3.4-9.fc37.x86_64 libXext-devel-1.3.4-9.fc37.x86_64 libXfixes-6.0.0-4.fc37.x86_64 libXfixes-devel-6.0.0-4.fc37.x86_64 libXfont2-2.0.3-13.fc37.x86_64 libXft-2.3.4-3.fc37.x86_64 libXi-1.8-3.fc37.x86_64 libXi-devel-1.8-3.fc37.x86_64 libXmu-1.1.3-9.fc37.x86_64 libXmu-devel-1.1.3-9.fc37.x86_64 libXrender-0.9.10-17.fc37.x86_64 libXt-1.2.1-3.fc37.x86_64 libXt-devel-1.2.1-3.fc37.x86_64 libXxf86vm-1.1.4-19.fc37.x86_64 libb2-0.98.1-7.fc37.x86_64 libdrm-2.4.112-1.fc38.x86_64 libdrm-devel-2.4.112-1.fc38.x86_64 libfontenc-1.1.4-4.fc37.x86_64 libgfortran-12.2.1-1.fc38.x86_64 libglvnd-1:1.5.0-1.fc38.x86_64 libglvnd-core-devel-1:1.5.0-1.fc38.x86_64 libglvnd-devel-1:1.5.0-1.fc38.x86_64 libglvnd-egl-1:1.5.0-1.fc38.x86_64 libglvnd-gles-1:1.5.0-1.fc38.x86_64 libglvnd-glx-1:1.5.0-1.fc38.x86_64 libglvnd-opengl-1:1.5.0-1.fc38.x86_64 libicu-71.1-1.fc37.x86_64 libicu-devel-71.1-1.fc37.x86_64 libimagequant-2.17.0-3.fc37.x86_64 libjpeg-turbo-2.1.4-1.fc38.x86_64 libmpc-1.2.1-5.fc37.x86_64 libpciaccess-0.16-7.fc37.x86_64 libpciaccess-devel-0.16-7.fc37.x86_64 libpng-2:1.6.37-13.fc37.x86_64 libqhull_r-1:7.2.1-10.fc37.x86_64 libquadmath-12.2.1-1.fc38.x86_64 libquadmath-devel-12.2.1-1.fc38.x86_64 libraqm-0.8.0-2.fc37.x86_64 libstdc++-devel-12.2.1-1.fc38.x86_64 libtiff-4.4.0-4.fc37.x86_64 libtiff-devel-4.4.0-4.fc37.x86_64 libtool-ltdl-2.4.7-2.fc37.x86_64 libunwind-1.6.2-3.fc37.x86_64 libuv-1:1.44.2-2.fc37.x86_64 libwayland-client-1.21.0-1.fc37.x86_64 libwayland-server-1.21.0-1.fc37.x86_64 libwebp-1.2.4-1.fc37.x86_64 libxcb-1.13.1-10.fc37.x86_64 libxcb-devel-1.13.1-10.fc37.x86_64 libxcrypt-devel-4.4.28-3.fc38.x86_64 libxkbfile-1.1.0-9.fc37.x86_64 libxshmfence-1.3-11.fc37.x86_64 libxslt-1.1.37-1.fc38.x86_64 make-1:4.3-11.fc37.x86_64 mesa-libEGL-22.2.0~rc3-1.fc38.x86_64 mesa-libGL-22.2.0~rc3-1.fc38.x86_64 mesa-libGL-devel-22.2.0~rc3-1.fc38.x86_64 mesa-libGLU-9.0.1-7.fc37.x86_64 mesa-libGLU-devel-9.0.1-7.fc37.x86_64 mesa-libgbm-22.2.0~rc3-1.fc38.x86_64 mesa-libglapi-22.2.0~rc3-1.fc38.x86_64 mpdecimal-2.5.1-4.fc37.x86_64 ncurses-6.3-3.20220501.fc37.x86_64 nettle-3.8-2.fc37.x86_64 openblas-0.3.21-3.fc38.x86_64 openblas-openmp-0.3.21-3.fc38.x86_64 openjpeg2-2.5.0-2.fc37.x86_64 perl-Carp-1.52-489.fc37.noarch perl-Class-Struct-0.66-492.fc38.noarch perl-DynaLoader-1.52-492.fc38.x86_64 perl-Encode-4:3.19-492.fc38.x86_64 perl-Errno-1.36-492.fc38.x86_64 perl-Exporter-5.77-489.fc37.noarch perl-Fcntl-1.15-492.fc38.x86_64 perl-File-Basename-2.85-492.fc38.noarch perl-File-Path-2.18-489.fc37.noarch perl-File-Temp-1:0.231.100-489.fc37.noarch perl-File-stat-1.12-492.fc38.noarch perl-Getopt-Long-1:2.52-489.fc37.noarch perl-Getopt-Std-1.13-492.fc38.noarch perl-HTTP-Tiny-0.082-1.fc37.noarch perl-IO-1.50-492.fc38.x86_64 perl-IPC-Open3-1.22-492.fc38.noarch perl-MIME-Base64-3.16-489.fc37.x86_64 perl-POSIX-2.03-492.fc38.x86_64 perl-PathTools-3.84-489.fc37.x86_64 perl-Pod-Escapes-1:1.07-489.fc37.noarch perl-Pod-Perldoc-3.28.01-490.fc37.noarch perl-Pod-Simple-1:3.43-490.fc37.noarch perl-Pod-Usage-4:2.03-3.fc37.noarch perl-Scalar-List-Utils-5:1.63-489.fc38.x86_64 perl-SelectSaver-1.02-492.fc38.noarch perl-Socket-4:2.036-1.fc38.x86_64 perl-Storable-1:3.26-489.fc37.x86_64 perl-Symbol-1.09-492.fc38.noarch perl-Term-ANSIColor-5.01-490.fc37.noarch perl-Term-Cap-1.17-489.fc37.noarch perl-Text-ParseWords-3.31-489.fc37.noarch perl-Text-Tabs+Wrap-2021.0814-489.fc37.noarch perl-Time-Local-2:1.300-489.fc37.noarch perl-constant-1.33-490.fc37.noarch perl-if-0.61.000-492.fc38.noarch perl-interpreter-4:5.36.0-492.fc38.x86_64 perl-libs-4:5.36.0-492.fc38.x86_64 perl-macros-4:5.36.0-492.fc38.noarch perl-mro-1.26-492.fc38.x86_64 perl-overload-1.35-492.fc38.noarch perl-overloading-0.02-492.fc38.noarch perl-parent-1:0.238-489.fc37.noarch perl-podlators-1:4.14-489.fc37.noarch perl-subs-1.04-492.fc38.noarch perl-vars-1.05-492.fc38.noarch pixman-0.40.0-6.fc37.x86_64 pybind11-devel-2.10.0-1.fc38.x86_64 pyproject-rpm-macros-1.3.3-1.fc38.noarch python-pip-wheel-22.2.2-1.fc38.noarch python-rpm-macros-3.11-4.fc37.noarch python-setuptools-wheel-65.3.0-1.fc38.noarch python3-3.11.0~rc1-2.fc38.x86_64 python3-appdirs-1.4.4-7.fc38.noarch python3-brotli-1.0.9-9.fc38.x86_64 python3-cairo-1.21.0-3.fc38.x86_64 python3-contourpy-1.0.4-2.fc37.x86_64 python3-cycler-0.11.0-6.fc37.noarch python3-dateutil-1:2.8.2-4.fc38.noarch python3-devel-3.11.0~rc1-2.fc38.x86_64 python3-flaky-3.7.0-9.fc37.noarch python3-fonttools-4.37.1-1.fc38.x86_64 python3-fs-2.4.11-12.fc38.noarch python3-kiwisolver-1.4.4-1.fc37.x86_64 python3-libs-3.11.0~rc1-2.fc38.x86_64 python3-lxml-4.7.1-6.fc38.x86_64 python3-matplotlib-3.6.0~rc2-1.fc38.x86_64 python3-matplotlib-data-3.6.0~rc2-1.fc38.noarch python3-matplotlib-data-fonts-3.6.0~rc2-1.fc38.noarch python3-matplotlib-tk-3.6.0~rc2-1.fc38.x86_64 python3-munkres-1.1.2-13.fc38.noarch python3-numpy-1:1.22.0-7.fc38.x86_64 python3-numpy-f2py-1:1.22.0-7.fc38.x86_64 python3-olefile-0.46-18.fc38.noarch python3-packaging-21.3-7.fc38.noarch python3-pillow-9.2.0-2.fc38.x86_64 python3-pillow-tk-9.2.0-2.fc38.x86_64 python3-pyparsing-3.0.9-2.fc38.noarch python3-pytz-2022.2-1.fc38.noarch python3-rpm-generators-13-2.fc37.noarch python3-rpm-macros-3.11-4.fc37.noarch python3-scipy-1.8.1-6.fc37.x86_64 python3-setuptools-65.3.0-1.fc38.noarch python3-six-1.16.0-8.fc37.noarch python3-tkinter-3.11.0~rc1-2.fc38.x86_64 python3-wheel-1:0.37.1-4.fc38.noarch rhash-1.4.2-3.fc37.x86_64 tcl-1:8.6.12-3.fc37.x86_64 tk-1:8.6.12-3.fc37.x86_64 valgrind-1:3.19.0-4.fc37.x86_64 valgrind-devel-1:3.19.0-4.fc37.x86_64 vim-filesystem-2:9.0.327-1.fc38.noarch xkbcomp-1.4.5-4.fc37.x86_64 xkeyboard-config-2.36-2.fc37.noarch xml-common-0.6.3-59.fc37.noarch xorg-x11-proto-devel-2022.2-2.fc38.noarch xorg-x11-server-Xvfb-1.20.14-8.fc37.x86_64 xorg-x11-server-common-1.20.14-8.fc37.x86_64 xorg-x11-xauth-1:1.1.2-2.fc37.x86_64 zlib-devel-1.2.12-5.fc38.x86_64 Complete! Finish: build setup for smoldyn-2.67.3-3.fc38.src.rpm Start: rpmbuild smoldyn-2.67.3-3.fc38.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1658534400 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.Qtjjb0 + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf Smoldyn-2.67.3 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/Smoldyn-2.67.3.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd Smoldyn-2.67.3 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + echo 'Patch #0 (smoldyn-fix_libpaths.patch):' Patch #0 (smoldyn-fix_libpaths.patch): + /usr/bin/patch --no-backup-if-mismatch -f -p0 -b --suffix .fix_libpaths --fuzz=0 patching file CMakeLists.txt Hunk #1 succeeded at 253 (offset 44 lines). Hunk #2 succeeded at 269 (offset 44 lines). Hunk #3 succeeded at 433 (offset 44 lines). Hunk #4 succeeded at 510 (offset 47 lines). Patch #1 (smoldyn-freeglut.patch): + echo 'Patch #1 (smoldyn-freeglut.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p0 -b --suffix .freeglut --fuzz=0 patching file CMakeLists.txt Hunk #1 succeeded at 365 (offset 39 lines). Patch #2 (smoldyn-create_soname.patch): + echo 'Patch #2 (smoldyn-create_soname.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p0 -b --suffix .create_soname --fuzz=0 patching file CMakeLists.txt Hunk #2 succeeded at 517 (offset 47 lines). Patch #3 (smoldyn-avoid_automatic_wheel.patch): + echo 'Patch #3 (smoldyn-avoid_automatic_wheel.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p0 -b --suffix .avoid_automatic_wheel --fuzz=0 patching file source/python/CMakeLists.txt Hunk #1 succeeded at 20 (offset -3 lines). Patch #4 (smoldyn-bug121.patch): + echo 'Patch #4 (smoldyn-bug121.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .bug121 --fuzz=0 patching file tests/test_api.py Patch #5 (smoldyn-bug123.patch): + echo 'Patch #5 (smoldyn-bug123.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .bug123 --fuzz=0 patching file tests/test_api.py + rm -rf source/MSVClibs + rm -rf source/pybind11 + rm -rf source/BioNetGen source/MinGWlibs Toolchain-mingw32.cmake + rm -rf source/vcell/SimpleMesh.cpp source/vcell/SimpleMesh.h source/vcell/SimpleValueProvider.cpp source/vcell/SimpleValueProvider.h source/vcell/zconf.h source/vcell/zlib.h source/vcell/zlib.lib source/NextSubVolume/Eigen + rm -rf source/NextSubVolume/boost_include + rm -f 'source/vtk/*' + find . -type f -name '*.h' -exec chmod 0644 '{}' ';' + find . -type f -name '*.c' -exec chmod 0644 '{}' ';' + find . -type f -name '*.pdf' -exec chmod 0644 '{}' ';' + find . -type f -name '*.txt' -exec chmod 0644 '{}' ';' + find . -type f -name '*.txt' -exec sed -i 's/\r$//' '{}' ';' + sed -e 's|../../../source/BioNetGen/BNG2.pl|/usr/share/perl5/vendor_perl/BioNetGen/BNG2.pl|g' -i examples/S95_regression/lrmsim.txt examples/S12_bionetgen/lrm/lrmsim.txt examples/S12_bionetgen/abba/abbasim.txt examples/S94_archive/Andrews_2016/BioNetGen/lrm/lrmsim.txt examples/S94_archive/Andrews_2016/BioNetGen/abba/abbasim.txt + cp -p source/libSteve/SFMT/LICENSE.txt source/libSteve/SFMT/SFMT-LICENSE.txt + cp -p source/libSteve/SFMT/README.txt source/libSteve/SFMT/SFMT-README.txt + find -name '*.pyc' -delete + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.npxGCU + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd Smoldyn-2.67.3 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + /usr/bin/cmake -S . -B redhat-linux-build -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -Wno-dev -B build -DCPACK_BINARY_STGZ:BOOL=OFF -DCPACK_BINARY_TGZ:BOOL=OFF -DCPACK_BINARY_TZ:BOOL=OFF -DCPACK_SOURCE_TBZ2:BOOL=OFF -DCPACK_SOURCE_TGZ:BOOL=OFF -DCPACK_SOURCE_TXZ:BOOL=OFF -DCPACK_SOURCE_TZ:BOOL=OFF -DOPTION_VCELL:BOOL=OFF -DOPTION_VTK:BOOL=OFF -DBUILD_SHARED_LIBS:BOOL=ON -DSMOLDYN_VERSION:STRING=2.67.3 -DSMOLDYN_VERSION_MAJOR:STRING=2 -DOPTION_TARGET_LIBSMOLDYN:BOOL=ON -DOPTION_STATIC:BOOL=OFF -DOPTION_PYTHON:BOOL=ON -DPYBIND11_FINDPYTHON:BOOL=ON -Dpybind11_DIR:PATH=/usr/share/cmake/pybind11 -DOPTION_USE_ZLIB:BOOL=ON -DOPTION_PDE:BOOL=ON -DPERL_VENDORLIB:PATH=/usr/share/perl5/vendor_perl -DCMAKE_BUILD_TYPE:STRING=Release -DCMAKE_INSTALL_LIBDIR:PATH=/usr/lib64 -DCMAKE_INSTALL_PREFIX:PATH=/usr -DCMAKE_VERBOSE_MAKEFILE:BOOL=TRUE -DCMAKE_COLOR_MAKEFILE:BOOL=ON -DCMAKE_SKIP_RPATH:BOOL=YES -DHAVE_GL_FREEGLUT_H=TRUE -DOPTION_EXAMPLES:BOOL=OFF -DOPTION_DOCS:BOOL=OFF -- The CXX compiler identification is GNU 12.2.1 -- The C compiler identification is GNU 12.2.1 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Smoldyn version is set to: '2.67.3' -- Compiling for Smoldyn: ON -- Compiling for Libsmoldyn: ON -- Option to compile Smoldyn for VCell: OFF -- Option to cross-compile for Windows using MinGW: OFF -- Option to include NextSubvolume: ON -- Option to include VTK: OFF -- Option to compile with static libraries: OFF -- Option to include OpenGL support: ON -- Option to include LibTiff: ON -- Option to include Zlib: ON -- Option to incude Python module: ON -- Option to run Libsmoldyn examples: OFF -- Option to build documentation: OFF -- Performing Test C_FLAG_EXISTS -- Performing Test C_FLAG_EXISTS - Success -- Performing Test CXX_FLAG_EXISTS -- Performing Test CXX_FLAG_EXISTS - Success -- [COMPILER] Adding -Wno-unused-parameter -- Build type: Release -- Compiling on a Linux computer -- CMAKE_CXX_FLAGS variable: '-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' -- BioNetGen path: '/usr/share/perl5/vendor_perl/BioNetGen/BNG2.pl' -- Found OpenGL: /usr/lib64/libOpenGL.so -- OpenGL found: '/usr/include', '/usr/lib64/libGL.so;/usr/lib64/libGLU.so' -- Found GLUT: TRUE -- Found TIFF: /usr/lib64/libtiff.so (found version "4.4.0") -- Found Libtiff: '/usr/include', '/usr/lib64/libtiff.so' -- Found Zlib: '/usr/include', '/usr/lib64/libz.so' -- Boost headers found: '/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/boost_include' -- Found Python3: /usr/bin/python3.11 (found version "3.11.0") found components: Interpreter Development Development.Module Development.Embed -- Performing Test HAS_FLTO -- Performing Test HAS_FLTO - Success -- Found pybind11: /usr/include (found version "2.10.0") -- [TEST] Found 15 test scripts -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_Fortran_FLAGS_RELEASE CMAKE_INSTALL_DO_STRIP LIB_INSTALL_DIR SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/Smoldyn-2.67.3/build + /usr/bin/make -O -j2 V=1 VERBOSE=1 -C build make: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/cmake -S/builddir/build/BUILD/Smoldyn-2.67.3 -B/builddir/build/BUILD/Smoldyn-2.67.3/build --check-build-system CMakeFiles/Makefile.cmake 0 make: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/Smoldyn-2.67.3/build/CMakeFiles /builddir/build/BUILD/Smoldyn-2.67.3/build//CMakeFiles/progress.marks make: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f CMakeFiles/Makefile2 all /usr/bin/make -f source/libSteve/CMakeFiles/Steve.dir/build.make source/libSteve/CMakeFiles/Steve.dir/depend /usr/bin/make -f source/NextSubVolume/CMakeFiles/nsv.dir/build.make source/NextSubVolume/CMakeFiles/nsv.dir/depend make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" 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'/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/libSteve/CMakeFiles/Steve.dir/build.make source/libSteve/CMakeFiles/Steve.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 1%] Building CXX object source/NextSubVolume/CMakeFiles/nsv.dir/StructuredGrid.cpp.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/NextSubVolume && /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -isystem /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/boost_include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -std=gnu++14 -MD -MT source/NextSubVolume/CMakeFiles/nsv.dir/StructuredGrid.cpp.o -MF CMakeFiles/nsv.dir/StructuredGrid.cpp.o.d -o CMakeFiles/nsv.dir/StructuredGrid.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/StructuredGrid.cpp make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 2%] Building C object source/libSteve/CMakeFiles/Steve.dir/Geometry.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -std=gnu11 -MD -MT source/libSteve/CMakeFiles/Steve.dir/Geometry.c.o -MF CMakeFiles/Steve.dir/Geometry.c.o.d -o CMakeFiles/Steve.dir/Geometry.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/Geometry.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 4%] Building C object source/libSteve/CMakeFiles/Steve.dir/List.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -std=gnu11 -MD -MT source/libSteve/CMakeFiles/Steve.dir/List.c.o -MF CMakeFiles/Steve.dir/List.c.o.d -o CMakeFiles/Steve.dir/List.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/List.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 6%] Building C object source/libSteve/CMakeFiles/Steve.dir/math2.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -std=gnu11 -MD -MT source/libSteve/CMakeFiles/Steve.dir/math2.c.o -MF CMakeFiles/Steve.dir/math2.c.o.d -o CMakeFiles/Steve.dir/math2.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/math2.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 3%] Building CXX object source/NextSubVolume/CMakeFiles/nsv.dir/Species.cpp.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/NextSubVolume && /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -isystem /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/boost_include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -std=gnu++14 -MD -MT source/NextSubVolume/CMakeFiles/nsv.dir/Species.cpp.o -MF CMakeFiles/nsv.dir/Species.cpp.o.d -o CMakeFiles/nsv.dir/Species.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/Species.cpp make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 7%] Building C object source/libSteve/CMakeFiles/Steve.dir/opengl2.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -std=gnu11 -MD -MT source/libSteve/CMakeFiles/Steve.dir/opengl2.c.o -MF CMakeFiles/Steve.dir/opengl2.c.o.d -o CMakeFiles/Steve.dir/opengl2.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/opengl2.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 8%] Building CXX object source/NextSubVolume/CMakeFiles/nsv.dir/ReactionEquation.cpp.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/NextSubVolume && /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -isystem /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/boost_include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -std=gnu++14 -MD -MT source/NextSubVolume/CMakeFiles/nsv.dir/ReactionEquation.cpp.o -MF CMakeFiles/nsv.dir/ReactionEquation.cpp.o.d -o CMakeFiles/nsv.dir/ReactionEquation.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/ReactionEquation.cpp make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 9%] Building C object source/libSteve/CMakeFiles/Steve.dir/parse.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc 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-m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -std=gnu11 -MD -MT source/libSteve/CMakeFiles/Steve.dir/random2.c.o -MF CMakeFiles/Steve.dir/random2.c.o.d -o CMakeFiles/Steve.dir/random2.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/random2.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 14%] Building C object source/libSteve/CMakeFiles/Steve.dir/Rn.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -std=gnu11 -MD -MT source/libSteve/CMakeFiles/Steve.dir/Rn.c.o -MF CMakeFiles/Steve.dir/Rn.c.o.d -o CMakeFiles/Steve.dir/Rn.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/Rn.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 16%] Building C object source/libSteve/CMakeFiles/Steve.dir/RnSort.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -std=gnu11 -MD -MT source/libSteve/CMakeFiles/Steve.dir/RnSort.c.o -MF CMakeFiles/Steve.dir/RnSort.c.o.d -o CMakeFiles/Steve.dir/RnSort.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/RnSort.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 17%] Building C object source/libSteve/CMakeFiles/Steve.dir/rxnparam.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -std=gnu11 -MD -MT source/libSteve/CMakeFiles/Steve.dir/rxnparam.c.o -MF CMakeFiles/Steve.dir/rxnparam.c.o.d -o CMakeFiles/Steve.dir/rxnparam.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/rxnparam.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 18%] Building C object source/libSteve/CMakeFiles/Steve.dir/SimCommand.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -std=gnu11 -MD -MT source/libSteve/CMakeFiles/Steve.dir/SimCommand.c.o -MF CMakeFiles/Steve.dir/SimCommand.c.o.d -o CMakeFiles/Steve.dir/SimCommand.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/SimCommand.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 11%] Building CXX object source/NextSubVolume/CMakeFiles/nsv.dir/NextSubvolumeMethod.cpp.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/NextSubVolume && /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -isystem /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/boost_include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -std=gnu++14 -MD -MT source/NextSubVolume/CMakeFiles/nsv.dir/NextSubvolumeMethod.cpp.o -MF CMakeFiles/nsv.dir/NextSubvolumeMethod.cpp.o.d -o CMakeFiles/nsv.dir/NextSubvolumeMethod.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/NextSubvolumeMethod.cpp make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 19%] Building C object source/libSteve/CMakeFiles/Steve.dir/Sphere.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -std=gnu11 -MD -MT source/libSteve/CMakeFiles/Steve.dir/Sphere.c.o -MF CMakeFiles/Steve.dir/Sphere.c.o.d -o CMakeFiles/Steve.dir/Sphere.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/Sphere.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 20%] Building CXX object source/NextSubVolume/CMakeFiles/nsv.dir/Kairos.cpp.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/NextSubVolume && /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -isystem /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/boost_include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -std=gnu++14 -MD -MT source/NextSubVolume/CMakeFiles/nsv.dir/Kairos.cpp.o -MF CMakeFiles/nsv.dir/Kairos.cpp.o.d -o CMakeFiles/nsv.dir/Kairos.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/Kairos.cpp make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 23%] Building CXX object source/NextSubVolume/CMakeFiles/nsv.dir/Io.cpp.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/NextSubVolume && /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -isystem /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/boost_include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -std=gnu++14 -MD -MT source/NextSubVolume/CMakeFiles/nsv.dir/Io.cpp.o -MF CMakeFiles/nsv.dir/Io.cpp.o.d -o CMakeFiles/nsv.dir/Io.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/Io.cpp make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 22%] Building C object source/libSteve/CMakeFiles/Steve.dir/string2.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -std=gnu11 -MD -MT source/libSteve/CMakeFiles/Steve.dir/string2.c.o -MF CMakeFiles/Steve.dir/string2.c.o.d -o CMakeFiles/Steve.dir/string2.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/string2.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 24%] Building CXX object source/NextSubVolume/CMakeFiles/nsv.dir/Geometry.cpp.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/NextSubVolume && /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -isystem /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/boost_include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -std=gnu++14 -MD -MT source/NextSubVolume/CMakeFiles/nsv.dir/Geometry.cpp.o -MF CMakeFiles/nsv.dir/Geometry.cpp.o.d -o CMakeFiles/nsv.dir/Geometry.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/Geometry.cpp make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 25%] Building C object source/libSteve/CMakeFiles/Steve.dir/SurfaceParam.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -std=gnu11 -MD -MT source/libSteve/CMakeFiles/Steve.dir/SurfaceParam.c.o -MF CMakeFiles/Steve.dir/SurfaceParam.c.o.d -o CMakeFiles/Steve.dir/SurfaceParam.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/SurfaceParam.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 28%] Building C object source/libSteve/CMakeFiles/Steve.dir/Zn.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -std=gnu11 -MD -MT source/libSteve/CMakeFiles/Steve.dir/Zn.c.o -MF CMakeFiles/Steve.dir/Zn.c.o.d -o CMakeFiles/Steve.dir/Zn.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/Zn.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 29%] Building C object source/libSteve/CMakeFiles/Steve.dir/SFMT/SFMT.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -std=gnu11 -MD -MT source/libSteve/CMakeFiles/Steve.dir/SFMT/SFMT.c.o -MF CMakeFiles/Steve.dir/SFMT/SFMT.c.o.d -o CMakeFiles/Steve.dir/SFMT/SFMT.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/SFMT/SFMT.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[1]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 29%] Built target Steve make[1]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 27%] Building CXX object source/NextSubVolume/CMakeFiles/nsv.dir/nsvc.cpp.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/NextSubVolume && /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -isystem /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/boost_include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -std=gnu++14 -MD -MT source/NextSubVolume/CMakeFiles/nsv.dir/nsvc.cpp.o -MF CMakeFiles/nsv.dir/nsvc.cpp.o.d -o CMakeFiles/nsv.dir/nsvc.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/nsvc.cpp make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[1]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 29%] Built target nsv make[1]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f CMakeFiles/smoldyn_static.dir/build.make CMakeFiles/smoldyn_static.dir/depend /usr/bin/make -f CMakeFiles/smoldyn_shared.dir/build.make CMakeFiles/smoldyn_shared.dir/depend make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/CMakeFiles/smoldyn_shared.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f CMakeFiles/smoldyn_shared.dir/build.make CMakeFiles/smoldyn_shared.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/CMakeFiles/smoldyn_static.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f CMakeFiles/smoldyn_static.dir/build.make CMakeFiles/smoldyn_static.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 30%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolbng.c.o /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -std=gnu11 -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolbng.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolbng.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolbng.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolbng.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 32%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolbng.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -std=gnu11 -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolbng.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolbng.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolbng.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolbng.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 33%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolboxes.c.o /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -std=gnu11 -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolboxes.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolboxes.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolboxes.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c: In function 'boxesupdatelists': /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c:783:55: warning: argument 1 range [18446744071562067968, 18446744073709551614] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 783 | bptr->neigh=(boxptr*) calloc(nneigh,sizeof(boxptr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/random2.h:17, from /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c:13: /usr/include/stdlib.h:556:14: note: in a call to allocation function 'calloc' declared here 556 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 34%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolboxes.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -std=gnu11 -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolboxes.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolboxes.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolboxes.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c: In function 'boxesupdatelists': /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c:783:55: warning: argument 1 range [18446744071562067968, 18446744073709551614] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 783 | bptr->neigh=(boxptr*) calloc(nneigh,sizeof(boxptr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/random2.h:17, from /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c:13: /usr/include/stdlib.h:556:14: note: in a call to allocation function 'calloc' declared here 556 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 35%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcmd.c.o /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -std=gnu11 -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcmd.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcmd.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcmd.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolcmd.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolcmd.c: In function 'cmdlongrangeforce': /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolcmd.c:4755:82: warning: 'j2' may be used uninitialized [-Wmaybe-uninitialized] 4755 | moleclist->datad4[j2][d]+=force; }}}} | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolcmd.c:4638:22: note: 'j2' was declared here 4638 | int itct,i,j,j2,ll,d,dim,wrap[DIMMAX],m,duplicate; | ^~ make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 37%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcmd.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -std=gnu11 -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcmd.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcmd.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcmd.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolcmd.c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolcmd.c: In function 'cmdlongrangeforce': /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolcmd.c:4755:82: warning: 'j2' may be used uninitialized [-Wmaybe-uninitialized] 4755 | moleclist->datad4[j2][d]+=force; }}}} | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolcmd.c:4638:22: note: 'j2' was declared here 4638 | int itct,i,j,j2,ll,d,dim,wrap[DIMMAX],m,duplicate; | ^~ make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 38%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcomparts.c.o /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -std=gnu11 -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcomparts.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcomparts.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcomparts.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolcomparts.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 39%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcomparts.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -std=gnu11 -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcomparts.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcomparts.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcomparts.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolcomparts.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 40%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolfilament.c.o /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -std=gnu11 -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolfilament.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolfilament.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolfilament.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolfilament.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 41%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolfilament.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -std=gnu11 -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolfilament.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolfilament.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolfilament.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolfilament.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 43%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolgraphics.c.o /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -std=gnu11 -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolgraphics.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolgraphics.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolgraphics.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolgraphics.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 44%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolgraphics.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -std=gnu11 -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolgraphics.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolgraphics.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolgraphics.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolgraphics.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 45%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolmolec.c.o /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -std=gnu11 -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolmolec.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolmolec.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolmolec.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolmolec.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 46%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolmolec.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -std=gnu11 -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolmolec.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolmolec.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolmolec.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolmolec.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 48%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolport.c.o /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -std=gnu11 -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolport.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolport.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolport.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolport.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 49%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolport.c.o /usr/bin/gcc 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CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolrule.c.o /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -std=gnu11 -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolrule.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolrule.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolrule.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolrule.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 56%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolrule.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -std=gnu11 -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolrule.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolrule.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolrule.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolrule.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 58%] Building CXX object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolsim.cpp.o /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -std=gnu++14 -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolsim.cpp.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolsim.cpp.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolsim.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolsim.cpp make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 59%] Building CXX object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsim.cpp.o /usr/bin/g++ -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 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-I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -std=gnu11 -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolsurface.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolsurface.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolsurface.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolsurface.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 61%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsurface.c.o /usr/bin/gcc 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'/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 62%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolwall.c.o /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -std=gnu11 -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolwall.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolwall.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolwall.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolwall.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 64%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolwall.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -std=gnu11 -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolwall.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolwall.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolwall.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolwall.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 65%] Building CXX object CMakeFiles/smoldyn_static.dir/source/Smoldyn/libsmoldyn.cpp.o /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -std=gnu++14 -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/libsmoldyn.cpp.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/libsmoldyn.cpp.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/libsmoldyn.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/libsmoldyn.cpp make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 67%] Linking CXX static library libsmoldyn_static.a /usr/bin/cmake -P CMakeFiles/smoldyn_static.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/smoldyn_static.dir/link.txt --verbose=1 /usr/bin/ar qc libsmoldyn_static.a CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolbng.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolboxes.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcmd.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcomparts.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolfilament.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolgraphics.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolmolec.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolport.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smollattice.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolreact.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolrule.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolsim.cpp.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolsurface.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolwall.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/libsmoldyn.cpp.o source/libSteve/CMakeFiles/Steve.dir/Geometry.c.o source/libSteve/CMakeFiles/Steve.dir/List.c.o source/libSteve/CMakeFiles/Steve.dir/math2.c.o source/libSteve/CMakeFiles/Steve.dir/opengl2.c.o source/libSteve/CMakeFiles/Steve.dir/parse.c.o source/libSteve/CMakeFiles/Steve.dir/queue.c.o source/libSteve/CMakeFiles/Steve.dir/random2.c.o source/libSteve/CMakeFiles/Steve.dir/Rn.c.o source/libSteve/CMakeFiles/Steve.dir/RnSort.c.o source/libSteve/CMakeFiles/Steve.dir/rxnparam.c.o source/libSteve/CMakeFiles/Steve.dir/SimCommand.c.o source/libSteve/CMakeFiles/Steve.dir/Sphere.c.o source/libSteve/CMakeFiles/Steve.dir/string2.c.o source/libSteve/CMakeFiles/Steve.dir/SurfaceParam.c.o source/libSteve/CMakeFiles/Steve.dir/Zn.c.o source/libSteve/CMakeFiles/Steve.dir/SFMT/SFMT.c.o source/NextSubVolume/CMakeFiles/nsv.dir/StructuredGrid.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/Species.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/ReactionEquation.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/NextSubvolumeMethod.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/Kairos.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/Io.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/Geometry.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/nsvc.cpp.o /usr/bin/ranlib libsmoldyn_static.a make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[1]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 67%] Built target smoldyn_static make[1]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/python/CMakeFiles/_pysmoldyn.dir/build.make source/python/CMakeFiles/_pysmoldyn.dir/depend make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python/CMakeFiles/_pysmoldyn.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/python/CMakeFiles/_pysmoldyn.dir/build.make source/python/CMakeFiles/_pysmoldyn.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 66%] Building CXX object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/libsmoldyn.cpp.o /usr/bin/g++ -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -std=gnu++14 -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/libsmoldyn.cpp.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/libsmoldyn.cpp.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/libsmoldyn.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/libsmoldyn.cpp make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 69%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolbng.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.11 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -std=gnu11 -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolbng.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolbng.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolbng.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolbng.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 71%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolboxes.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.11 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -std=gnu11 -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolboxes.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolboxes.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolboxes.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c: In function 'boxesupdatelists': /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c:783:55: warning: argument 1 range [18446744071562067968, 18446744073709551614] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 783 | bptr->neigh=(boxptr*) calloc(nneigh,sizeof(boxptr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/random2.h:17, from /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c:13: /usr/include/stdlib.h:556:14: note: in a call to allocation function 'calloc' declared here 556 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 72%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcmd.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.11 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -std=gnu11 -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcmd.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcmd.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcmd.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolcmd.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolcmd.c: In function 'cmdlongrangeforce': /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolcmd.c:4755:82: warning: 'j2' may be used uninitialized [-Wmaybe-uninitialized] 4755 | moleclist->datad4[j2][d]+=force; }}}} | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolcmd.c:4638:22: note: 'j2' was declared here 4638 | int itct,i,j,j2,ll,d,dim,wrap[DIMMAX],m,duplicate; | ^~ make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 74%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcomparts.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.11 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -std=gnu11 -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcomparts.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcomparts.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcomparts.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolcomparts.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 75%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolfilament.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.11 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -std=gnu11 -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolfilament.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolfilament.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolfilament.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolfilament.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 76%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolgraphics.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.11 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -std=gnu11 -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolgraphics.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolgraphics.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolgraphics.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolgraphics.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 77%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolmolec.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.11 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -std=gnu11 -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolmolec.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolmolec.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolmolec.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolmolec.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 79%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolport.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.11 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -std=gnu11 -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolport.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolport.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolport.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolport.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 80%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smollattice.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.11 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -std=gnu11 -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smollattice.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smollattice.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smollattice.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smollattice.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 81%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolreact.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.11 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -std=gnu11 -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolreact.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolreact.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolreact.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolreact.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 70%] Linking CXX shared library libsmoldyn_shared.so /usr/bin/cmake -E cmake_link_script CMakeFiles/smoldyn_shared.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libsmoldyn_shared.so.2 -o libsmoldyn_shared.so.2.67.3 CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolbng.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolboxes.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcmd.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcomparts.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolfilament.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolgraphics.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolmolec.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolport.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smollattice.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolreact.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolrule.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsim.cpp.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsurface.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolwall.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/libsmoldyn.cpp.o source/libSteve/CMakeFiles/Steve.dir/Geometry.c.o source/libSteve/CMakeFiles/Steve.dir/List.c.o source/libSteve/CMakeFiles/Steve.dir/math2.c.o source/libSteve/CMakeFiles/Steve.dir/opengl2.c.o source/libSteve/CMakeFiles/Steve.dir/parse.c.o source/libSteve/CMakeFiles/Steve.dir/queue.c.o source/libSteve/CMakeFiles/Steve.dir/random2.c.o source/libSteve/CMakeFiles/Steve.dir/Rn.c.o source/libSteve/CMakeFiles/Steve.dir/RnSort.c.o source/libSteve/CMakeFiles/Steve.dir/rxnparam.c.o source/libSteve/CMakeFiles/Steve.dir/SimCommand.c.o source/libSteve/CMakeFiles/Steve.dir/Sphere.c.o source/libSteve/CMakeFiles/Steve.dir/string2.c.o source/libSteve/CMakeFiles/Steve.dir/SurfaceParam.c.o source/libSteve/CMakeFiles/Steve.dir/Zn.c.o source/libSteve/CMakeFiles/Steve.dir/SFMT/SFMT.c.o source/NextSubVolume/CMakeFiles/nsv.dir/StructuredGrid.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/Species.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/ReactionEquation.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/NextSubvolumeMethod.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/Kairos.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/Io.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/Geometry.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/nsvc.cpp.o /usr/lib64/libGL.so /usr/lib64/libGLU.so -lglut /usr/lib64/libtiff.so /usr/lib64/libz.so /usr/bin/cmake -E cmake_symlink_library libsmoldyn_shared.so.2.67.3 libsmoldyn_shared.so.2 libsmoldyn_shared.so /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:714:16: warning: type 'struct latticestruct' violates the C++ One Definition Rule [-Wodr] 714 | typedef struct latticestruct | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:714:16: note: a different type is defined in another translation unit 714 | typedef struct latticestruct | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:739:26: note: the first difference of corresponding definitions is field 'nsv' 739 | NextSubvolumeMethod* nsv; // nsv class | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:739:26: note: a field of same name but different type is defined in another translation unit 739 | NextSubvolumeMethod* nsv; // nsv class | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:714:16: note: type name 'NextSubvolumeMethod' should match type name 'Kairos::NextSubvolumeMethod' 714 | typedef struct latticestruct | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/NextSubvolumeMethod.h:137:7: note: the incompatible type is defined here 137 | class NextSubvolumeMethod | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c: In function 'boxesupdatelists': /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c:783:55: warning: argument 1 range [18446744071562067968, 18446744073709551614] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 783 | bptr->neigh=(boxptr*) calloc(nneigh,sizeof(boxptr)); | ^ /usr/include/stdlib.h:556:14: note: in a call to allocation function 'calloc' declared here 556 | extern void *calloc (size_t __nmemb, size_t __size) | ^ make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 82%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolrule.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.11 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -std=gnu11 -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolrule.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolrule.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolrule.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolrule.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[1]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 83%] Built target smoldyn_shared make[1]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f CMakeFiles/smoldyn.dir/build.make CMakeFiles/smoldyn.dir/depend make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/CMakeFiles/smoldyn.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f CMakeFiles/smoldyn.dir/build.make CMakeFiles/smoldyn.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 85%] Building CXX object CMakeFiles/smoldyn.dir/source/Smoldyn/smoldyn.cpp.o /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wno-unused-parameter -Wall -Wextra -std=gnu++14 -MD -MT CMakeFiles/smoldyn.dir/source/Smoldyn/smoldyn.cpp.o -MF CMakeFiles/smoldyn.dir/source/Smoldyn/smoldyn.cpp.o.d -o CMakeFiles/smoldyn.dir/source/Smoldyn/smoldyn.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.cpp make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 86%] Linking CXX executable smoldyn /usr/bin/cmake -E cmake_link_script CMakeFiles/smoldyn.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/smoldyn.dir/source/Smoldyn/smoldyn.cpp.o -o smoldyn libsmoldyn_shared.so.2.67.3 /usr/lib64/libGL.so /usr/lib64/libGLU.so -lglut /usr/lib64/libtiff.so /usr/lib64/libz.so make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[1]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 86%] Built target smoldyn make[1]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 87%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsurface.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.11 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -std=gnu11 -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsurface.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsurface.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsurface.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolsurface.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 88%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolwall.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.11 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -std=gnu11 -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolwall.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolwall.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolwall.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolwall.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 83%] Building CXX object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsim.cpp.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.11 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -std=gnu++14 -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsim.cpp.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsim.cpp.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsim.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolsim.cpp In file included from /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:15, from /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolsim.cpp:27: /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/../python/CallbackFunc.h:20:7: warning: 'CallbackFunc' declared with greater visibility than the type of its field 'CallbackFunc::func_' [-Wattributes] 20 | class CallbackFunc | ^~~~~~~~~~~~ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/../python/CallbackFunc.h:20:7: warning: 'CallbackFunc' declared with greater visibility than the type of its field 'CallbackFunc::target_' [-Wattributes] /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/../python/CallbackFunc.h:20:7: warning: 'CallbackFunc' declared with greater visibility than the type of its field 'CallbackFunc::args_' [-Wattributes] make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 90%] Building CXX object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/libsmoldyn.cpp.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.11 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -std=gnu++14 -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/libsmoldyn.cpp.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/libsmoldyn.cpp.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/libsmoldyn.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/libsmoldyn.cpp In file included from /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:15, from /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/libsmoldyn.cpp:15: /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/../python/CallbackFunc.h:20:7: warning: 'CallbackFunc' declared with greater visibility than the type of its field 'CallbackFunc::func_' [-Wattributes] 20 | class CallbackFunc | ^~~~~~~~~~~~ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/../python/CallbackFunc.h:20:7: warning: 'CallbackFunc' declared with greater visibility than the type of its field 'CallbackFunc::target_' [-Wattributes] /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/../python/CallbackFunc.h:20:7: warning: 'CallbackFunc' declared with greater visibility than the type of its field 'CallbackFunc::args_' [-Wattributes] make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 91%] Linking CXX static library lib_pysmoldyn.a cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/cmake -P CMakeFiles/_pysmoldyn.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/cmake -E cmake_link_script CMakeFiles/_pysmoldyn.dir/link.txt --verbose=1 /usr/bin/ar qc lib_pysmoldyn.a CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolbng.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolboxes.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcmd.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcomparts.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolfilament.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolgraphics.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolmolec.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolport.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smollattice.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolreact.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolrule.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsim.cpp.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsurface.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolwall.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/libsmoldyn.cpp.o ../libSteve/CMakeFiles/Steve.dir/Geometry.c.o ../libSteve/CMakeFiles/Steve.dir/List.c.o ../libSteve/CMakeFiles/Steve.dir/math2.c.o ../libSteve/CMakeFiles/Steve.dir/opengl2.c.o ../libSteve/CMakeFiles/Steve.dir/parse.c.o ../libSteve/CMakeFiles/Steve.dir/queue.c.o ../libSteve/CMakeFiles/Steve.dir/random2.c.o ../libSteve/CMakeFiles/Steve.dir/Rn.c.o ../libSteve/CMakeFiles/Steve.dir/RnSort.c.o ../libSteve/CMakeFiles/Steve.dir/rxnparam.c.o ../libSteve/CMakeFiles/Steve.dir/SimCommand.c.o ../libSteve/CMakeFiles/Steve.dir/Sphere.c.o ../libSteve/CMakeFiles/Steve.dir/string2.c.o ../libSteve/CMakeFiles/Steve.dir/SurfaceParam.c.o ../libSteve/CMakeFiles/Steve.dir/Zn.c.o ../libSteve/CMakeFiles/Steve.dir/SFMT/SFMT.c.o ../NextSubVolume/CMakeFiles/nsv.dir/StructuredGrid.cpp.o ../NextSubVolume/CMakeFiles/nsv.dir/Species.cpp.o ../NextSubVolume/CMakeFiles/nsv.dir/ReactionEquation.cpp.o ../NextSubVolume/CMakeFiles/nsv.dir/NextSubvolumeMethod.cpp.o ../NextSubVolume/CMakeFiles/nsv.dir/Kairos.cpp.o ../NextSubVolume/CMakeFiles/nsv.dir/Io.cpp.o ../NextSubVolume/CMakeFiles/nsv.dir/Geometry.cpp.o ../NextSubVolume/CMakeFiles/nsv.dir/nsvc.cpp.o /usr/bin/ranlib lib_pysmoldyn.a make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[1]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 91%] Built target _pysmoldyn make[1]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/python/CMakeFiles/_smoldyn.dir/build.make source/python/CMakeFiles/_smoldyn.dir/depend make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python/CMakeFiles/_smoldyn.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/python/CMakeFiles/_smoldyn.dir/build.make source/python/CMakeFiles/_smoldyn.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 93%] Building CXX object source/python/CMakeFiles/_smoldyn.dir/CallbackFunc.cpp.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/g++ -D_smoldyn_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/external/pybind11/include -isystem /usr/include/python3.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -fvisibility=hidden -Wno-unused-parameter -Wall -Wextra -DSMOLDYN_VERSION=2.67.3 -DENABLE_PYTHON_CALLBACK -fvisibility=hidden -flto -fno-fat-lto-objects -std=gnu++14 -MD -MT source/python/CMakeFiles/_smoldyn.dir/CallbackFunc.cpp.o -MF CMakeFiles/_smoldyn.dir/CallbackFunc.cpp.o.d -o CMakeFiles/_smoldyn.dir/CallbackFunc.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/python/CallbackFunc.cpp make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 93%] Building CXX object source/python/CMakeFiles/_smoldyn.dir/Command.cpp.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/g++ -D_smoldyn_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/external/pybind11/include -isystem /usr/include/python3.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -fvisibility=hidden -Wno-unused-parameter -Wall -Wextra -DSMOLDYN_VERSION=2.67.3 -DENABLE_PYTHON_CALLBACK -fvisibility=hidden -flto -fno-fat-lto-objects -std=gnu++14 -MD -MT source/python/CMakeFiles/_smoldyn.dir/Command.cpp.o -MF CMakeFiles/_smoldyn.dir/Command.cpp.o.d -o CMakeFiles/_smoldyn.dir/Command.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/python/Command.cpp make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 95%] Building CXX object source/python/CMakeFiles/_smoldyn.dir/Simulation.cpp.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/g++ -D_smoldyn_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/external/pybind11/include -isystem /usr/include/python3.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -fvisibility=hidden -Wno-unused-parameter -Wall -Wextra -DSMOLDYN_VERSION=2.67.3 -DENABLE_PYTHON_CALLBACK -fvisibility=hidden -flto -fno-fat-lto-objects -std=gnu++14 -MD -MT source/python/CMakeFiles/_smoldyn.dir/Simulation.cpp.o -MF CMakeFiles/_smoldyn.dir/Simulation.cpp.o.d -o CMakeFiles/_smoldyn.dir/Simulation.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/python/Simulation.cpp make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 96%] Building CXX object source/python/CMakeFiles/_smoldyn.dir/module.cpp.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/g++ -D_smoldyn_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/external/pybind11/include -isystem /usr/include/python3.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -fvisibility=hidden -Wno-unused-parameter -Wall -Wextra -DSMOLDYN_VERSION=2.67.3 -DENABLE_PYTHON_CALLBACK -fvisibility=hidden -flto -fno-fat-lto-objects -std=gnu++14 -MD -MT source/python/CMakeFiles/_smoldyn.dir/module.cpp.o -MF CMakeFiles/_smoldyn.dir/module.cpp.o.d -o CMakeFiles/_smoldyn.dir/module.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/python/module.cpp make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 97%] Linking CXX shared module /builddir/build/BUILD/Smoldyn-2.67.3/source/python/smoldyn/_smoldyn.cpython-311-x86_64-linux-gnu.so cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/cmake -E cmake_link_script CMakeFiles/_smoldyn.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -flto -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o /builddir/build/BUILD/Smoldyn-2.67.3/source/python/smoldyn/_smoldyn.cpython-311-x86_64-linux-gnu.so CMakeFiles/_smoldyn.dir/CallbackFunc.cpp.o CMakeFiles/_smoldyn.dir/Command.cpp.o CMakeFiles/_smoldyn.dir/Simulation.cpp.o CMakeFiles/_smoldyn.dir/module.cpp.o lib_pysmoldyn.a /usr/lib64/libGL.so /usr/lib64/libGLU.so -lglut /usr/lib64/libtiff.so /usr/lib64/libz.so cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/strip /builddir/build/BUILD/Smoldyn-2.67.3/source/python/smoldyn/_smoldyn.cpython-311-x86_64-linux-gnu.so /builddir/build/BUILD/Smoldyn-2.67.3/source/python/../Smoldyn/smoldyn.h:1044:16: warning: type 'struct simstruct' violates the C++ One Definition Rule [-Wodr] 1044 | typedef struct simstruct | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:1044:16: note: a different type is defined in another translation unit 1044 | typedef struct simstruct | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/python/../Smoldyn/smoldyn.h:1104:19: note: the first difference of corresponding definitions is field 'callbacks' 1104 | CallbackFunc* callbacks[MAX_PY_CALLBACK]; // Python callback. | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:1044:16: note: a type with different number of fields is defined in another translation unit 1044 | typedef struct simstruct | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:714:16: warning: type 'struct latticestruct' violates the C++ One Definition Rule [-Wodr] 714 | typedef struct latticestruct | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:714:16: note: a different type is defined in another translation unit 714 | typedef struct latticestruct | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:739:26: note: the first difference of corresponding definitions is field 'nsv' 739 | NextSubvolumeMethod* nsv; // nsv class | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:739:26: note: a field of same name but different type is defined in another translation unit 739 | NextSubvolumeMethod* nsv; // nsv class | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:714:16: note: type name 'NextSubvolumeMethod' should match type name 'Kairos::NextSubvolumeMethod' 714 | typedef struct latticestruct | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/NextSubvolumeMethod.h:137:7: note: the incompatible type is defined here 137 | class NextSubvolumeMethod | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c: In function 'boxesupdatelists': /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c:783:55: warning: argument 1 range [18446744071562067968, 18446744073709551614] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 783 | bptr->neigh=(boxptr*) calloc(nneigh,sizeof(boxptr)); | ^ /usr/include/stdlib.h:556:14: note: in a call to allocation function 'calloc' declared here 556 | extern void *calloc (size_t __nmemb, size_t __size) | ^ make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[1]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 97%] Built target _smoldyn make[1]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/python/CMakeFiles/copy_python_tree.dir/build.make source/python/CMakeFiles/copy_python_tree.dir/depend /usr/bin/make -f source/python/CMakeFiles/wheel.dir/build.make source/python/CMakeFiles/wheel.dir/depend make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python/CMakeFiles/copy_python_tree.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/python/CMakeFiles/copy_python_tree.dir/build.make source/python/CMakeFiles/copy_python_tree.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python/CMakeFiles/wheel.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/python/CMakeFiles/wheel.dir/build.make source/python/CMakeFiles/wheel.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 98%] Copying python source tree to binary directory cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/cmake -E copy_directory /builddir/build/BUILD/Smoldyn-2.67.3/source/python/smoldyn /builddir/build/BUILD/Smoldyn-2.67.3/build/py/smoldyn make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[1]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [100%] Built target copy_python_tree make[1]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [100%] Generating wheel in /builddir/build/BUILD/Smoldyn-2.67.3/build cd /builddir/build/BUILD/Smoldyn-2.67.3/build/py && /usr/bin/python3.11 setup.py bdist_wheel -d /builddir/build/BUILD/Smoldyn-2.67.3/build running bdist_wheel running build running build_py creating build creating build/lib.linux-x86_64-cpython-311 creating build/lib.linux-x86_64-cpython-311/smoldyn copying smoldyn/__init__.py -> build/lib.linux-x86_64-cpython-311/smoldyn copying smoldyn/__main__.py -> build/lib.linux-x86_64-cpython-311/smoldyn copying smoldyn/smoldyn.py -> build/lib.linux-x86_64-cpython-311/smoldyn copying smoldyn/types.py -> build/lib.linux-x86_64-cpython-311/smoldyn copying smoldyn/utils.py -> build/lib.linux-x86_64-cpython-311/smoldyn creating build/lib.linux-x86_64-cpython-311/smoldyn/biosimulators copying smoldyn/biosimulators/__init__.py -> build/lib.linux-x86_64-cpython-311/smoldyn/biosimulators copying smoldyn/biosimulators/__main__.py -> build/lib.linux-x86_64-cpython-311/smoldyn/biosimulators copying smoldyn/biosimulators/_version.py -> build/lib.linux-x86_64-cpython-311/smoldyn/biosimulators copying smoldyn/biosimulators/combine.py -> build/lib.linux-x86_64-cpython-311/smoldyn/biosimulators copying smoldyn/biosimulators/data_model.py -> build/lib.linux-x86_64-cpython-311/smoldyn/biosimulators copying smoldyn/biosimulators/utils.py -> build/lib.linux-x86_64-cpython-311/smoldyn/biosimulators copying smoldyn/_smoldyn.cpython-311-x86_64-linux-gnu.so -> build/lib.linux-x86_64-cpython-311/smoldyn running build_ext installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64 creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/smoldyn copying build/lib.linux-x86_64-cpython-311/smoldyn/_smoldyn.cpython-311-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/smoldyn creating build/bdist.linux-x86_64/wheel/smoldyn/biosimulators copying build/lib.linux-x86_64-cpython-311/smoldyn/biosimulators/utils.py -> build/bdist.linux-x86_64/wheel/smoldyn/biosimulators copying build/lib.linux-x86_64-cpython-311/smoldyn/biosimulators/data_model.py -> build/bdist.linux-x86_64/wheel/smoldyn/biosimulators copying build/lib.linux-x86_64-cpython-311/smoldyn/biosimulators/combine.py -> build/bdist.linux-x86_64/wheel/smoldyn/biosimulators copying build/lib.linux-x86_64-cpython-311/smoldyn/biosimulators/_version.py -> build/bdist.linux-x86_64/wheel/smoldyn/biosimulators copying build/lib.linux-x86_64-cpython-311/smoldyn/biosimulators/__main__.py -> build/bdist.linux-x86_64/wheel/smoldyn/biosimulators copying build/lib.linux-x86_64-cpython-311/smoldyn/biosimulators/__init__.py -> build/bdist.linux-x86_64/wheel/smoldyn/biosimulators copying build/lib.linux-x86_64-cpython-311/smoldyn/utils.py -> build/bdist.linux-x86_64/wheel/smoldyn copying build/lib.linux-x86_64-cpython-311/smoldyn/types.py -> build/bdist.linux-x86_64/wheel/smoldyn copying build/lib.linux-x86_64-cpython-311/smoldyn/smoldyn.py -> build/bdist.linux-x86_64/wheel/smoldyn copying build/lib.linux-x86_64-cpython-311/smoldyn/__main__.py -> build/bdist.linux-x86_64/wheel/smoldyn copying build/lib.linux-x86_64-cpython-311/smoldyn/__init__.py -> build/bdist.linux-x86_64/wheel/smoldyn running install_egg_info running egg_info creating smoldyn.egg-info writing smoldyn.egg-info/PKG-INFO writing dependency_links to smoldyn.egg-info/dependency_links.txt writing requirements to smoldyn.egg-info/requires.txt writing top-level names to smoldyn.egg-info/top_level.txt writing manifest file 'smoldyn.egg-info/SOURCES.txt' reading manifest file 'smoldyn.egg-info/SOURCES.txt' writing manifest file 'smoldyn.egg-info/SOURCES.txt' Copying smoldyn.egg-info to build/bdist.linux-x86_64/wheel/smoldyn-2.67.3-py3.11.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/smoldyn-2.67.3.dist-info/WHEEL creating '/builddir/build/BUILD/Smoldyn-2.67.3/build/smoldyn-2.67.3-cp311-cp311-linux_x86_64.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'smoldyn/__init__.py' adding 'smoldyn/__main__.py' adding 'smoldyn/_smoldyn.cpython-311-x86_64-linux-gnu.so' adding 'smoldyn/smoldyn.py' adding 'smoldyn/types.py' adding 'smoldyn/utils.py' adding 'smoldyn/biosimulators/__init__.py' adding 'smoldyn/biosimulators/__main__.py' adding 'smoldyn/biosimulators/_version.py' adding 'smoldyn/biosimulators/combine.py' adding 'smoldyn/biosimulators/data_model.py' adding 'smoldyn/biosimulators/utils.py' adding 'smoldyn-2.67.3.dist-info/METADATA' adding 'smoldyn-2.67.3.dist-info/WHEEL' adding 'smoldyn-2.67.3.dist-info/top_level.txt' adding 'smoldyn-2.67.3.dist-info/RECORD' removing build/bdist.linux-x86_64/wheel make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/lib/python3.11/site-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( make[1]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [100%] Built target wheel make[1]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/Smoldyn-2.67.3/build/CMakeFiles 0 make: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.Xlzn0C + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64 ++ dirname /builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd Smoldyn-2.67.3 + /usr/bin/make install DESTDIR=/builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64 'INSTALL=/usr/bin/install -p' -C build make: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/cmake -S/builddir/build/BUILD/Smoldyn-2.67.3 -B/builddir/build/BUILD/Smoldyn-2.67.3/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/Smoldyn-2.67.3/build/CMakeFiles /builddir/build/BUILD/Smoldyn-2.67.3/build//CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/libSteve/CMakeFiles/Steve.dir/build.make source/libSteve/CMakeFiles/Steve.dir/depend make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve/CMakeFiles/Steve.dir/DependInfo.cmake --color= Consolidate compiler generated dependencies of target Steve make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/libSteve/CMakeFiles/Steve.dir/build.make source/libSteve/CMakeFiles/Steve.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Nothing to be done for 'source/libSteve/CMakeFiles/Steve.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 19%] Built target Steve /usr/bin/make -f source/NextSubVolume/CMakeFiles/nsv.dir/build.make source/NextSubVolume/CMakeFiles/nsv.dir/depend make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/source/NextSubVolume /builddir/build/BUILD/Smoldyn-2.67.3/build/source/NextSubVolume/CMakeFiles/nsv.dir/DependInfo.cmake --color= Consolidate compiler generated dependencies of target nsv make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/NextSubVolume/CMakeFiles/nsv.dir/build.make source/NextSubVolume/CMakeFiles/nsv.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Nothing to be done for 'source/NextSubVolume/CMakeFiles/nsv.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 29%] Built target nsv /usr/bin/make -f CMakeFiles/smoldyn_static.dir/build.make CMakeFiles/smoldyn_static.dir/depend make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/CMakeFiles/smoldyn_static.dir/DependInfo.cmake --color= Consolidate compiler generated dependencies of target smoldyn_static make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f CMakeFiles/smoldyn_static.dir/build.make CMakeFiles/smoldyn_static.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Nothing to be done for 'CMakeFiles/smoldyn_static.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 49%] Built target smoldyn_static /usr/bin/make -f CMakeFiles/smoldyn_shared.dir/build.make CMakeFiles/smoldyn_shared.dir/depend make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/CMakeFiles/smoldyn_shared.dir/DependInfo.cmake --color= Consolidate compiler generated dependencies of target smoldyn_shared make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f CMakeFiles/smoldyn_shared.dir/build.make CMakeFiles/smoldyn_shared.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Nothing to be done for 'CMakeFiles/smoldyn_shared.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 69%] Built target smoldyn_shared /usr/bin/make -f CMakeFiles/smoldyn.dir/build.make CMakeFiles/smoldyn.dir/depend make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/CMakeFiles/smoldyn.dir/DependInfo.cmake --color= Consolidate compiler generated dependencies of target smoldyn make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f CMakeFiles/smoldyn.dir/build.make CMakeFiles/smoldyn.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Nothing to be done for 'CMakeFiles/smoldyn.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 71%] Built target smoldyn /usr/bin/make -f source/python/CMakeFiles/_pysmoldyn.dir/build.make source/python/CMakeFiles/_pysmoldyn.dir/depend make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python/CMakeFiles/_pysmoldyn.dir/DependInfo.cmake --color= Consolidate compiler generated dependencies of target _pysmoldyn make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/python/CMakeFiles/_pysmoldyn.dir/build.make source/python/CMakeFiles/_pysmoldyn.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Nothing to be done for 'source/python/CMakeFiles/_pysmoldyn.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 91%] Built target _pysmoldyn /usr/bin/make -f source/python/CMakeFiles/_smoldyn.dir/build.make source/python/CMakeFiles/_smoldyn.dir/depend make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python/CMakeFiles/_smoldyn.dir/DependInfo.cmake --color= Consolidate compiler generated dependencies of target _smoldyn make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/python/CMakeFiles/_smoldyn.dir/build.make source/python/CMakeFiles/_smoldyn.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Nothing to be done for 'source/python/CMakeFiles/_smoldyn.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 97%] Built target _smoldyn /usr/bin/make -f source/python/CMakeFiles/copy_python_tree.dir/build.make source/python/CMakeFiles/copy_python_tree.dir/depend make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python/CMakeFiles/copy_python_tree.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/python/CMakeFiles/copy_python_tree.dir/build.make source/python/CMakeFiles/copy_python_tree.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 98%] Copying python source tree to binary directory cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/cmake -E copy_directory /builddir/build/BUILD/Smoldyn-2.67.3/source/python/smoldyn /builddir/build/BUILD/Smoldyn-2.67.3/build/py/smoldyn make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 98%] Built target copy_python_tree /usr/bin/make -f source/python/CMakeFiles/wheel.dir/build.make source/python/CMakeFiles/wheel.dir/depend make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python/CMakeFiles/wheel.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/python/CMakeFiles/wheel.dir/build.make source/python/CMakeFiles/wheel.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [100%] Generating wheel in /builddir/build/BUILD/Smoldyn-2.67.3/build cd /builddir/build/BUILD/Smoldyn-2.67.3/build/py && /usr/bin/python3.11 setup.py bdist_wheel -d /builddir/build/BUILD/Smoldyn-2.67.3/build running bdist_wheel running build running build_py copying smoldyn/__init__.py -> build/lib.linux-x86_64-cpython-311/smoldyn copying smoldyn/__main__.py -> build/lib.linux-x86_64-cpython-311/smoldyn copying smoldyn/smoldyn.py -> build/lib.linux-x86_64-cpython-311/smoldyn copying smoldyn/types.py -> build/lib.linux-x86_64-cpython-311/smoldyn copying smoldyn/utils.py -> build/lib.linux-x86_64-cpython-311/smoldyn copying smoldyn/biosimulators/__init__.py -> build/lib.linux-x86_64-cpython-311/smoldyn/biosimulators copying smoldyn/biosimulators/__main__.py -> build/lib.linux-x86_64-cpython-311/smoldyn/biosimulators copying smoldyn/biosimulators/_version.py -> build/lib.linux-x86_64-cpython-311/smoldyn/biosimulators copying smoldyn/biosimulators/combine.py -> build/lib.linux-x86_64-cpython-311/smoldyn/biosimulators copying smoldyn/biosimulators/data_model.py -> build/lib.linux-x86_64-cpython-311/smoldyn/biosimulators copying smoldyn/biosimulators/utils.py -> build/lib.linux-x86_64-cpython-311/smoldyn/biosimulators copying smoldyn/_smoldyn.cpython-311-x86_64-linux-gnu.so -> build/lib.linux-x86_64-cpython-311/smoldyn running build_ext /usr/lib/python3.11/site-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/smoldyn copying build/lib.linux-x86_64-cpython-311/smoldyn/_smoldyn.cpython-311-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/smoldyn copying build/lib.linux-x86_64-cpython-311/smoldyn/utils.py -> build/bdist.linux-x86_64/wheel/smoldyn copying build/lib.linux-x86_64-cpython-311/smoldyn/types.py -> build/bdist.linux-x86_64/wheel/smoldyn copying build/lib.linux-x86_64-cpython-311/smoldyn/smoldyn.py -> build/bdist.linux-x86_64/wheel/smoldyn copying build/lib.linux-x86_64-cpython-311/smoldyn/__main__.py -> build/bdist.linux-x86_64/wheel/smoldyn copying build/lib.linux-x86_64-cpython-311/smoldyn/__init__.py -> build/bdist.linux-x86_64/wheel/smoldyn creating build/bdist.linux-x86_64/wheel/smoldyn/biosimulators copying build/lib.linux-x86_64-cpython-311/smoldyn/biosimulators/utils.py -> build/bdist.linux-x86_64/wheel/smoldyn/biosimulators copying build/lib.linux-x86_64-cpython-311/smoldyn/biosimulators/data_model.py -> build/bdist.linux-x86_64/wheel/smoldyn/biosimulators copying build/lib.linux-x86_64-cpython-311/smoldyn/biosimulators/combine.py -> build/bdist.linux-x86_64/wheel/smoldyn/biosimulators copying build/lib.linux-x86_64-cpython-311/smoldyn/biosimulators/_version.py -> build/bdist.linux-x86_64/wheel/smoldyn/biosimulators copying build/lib.linux-x86_64-cpython-311/smoldyn/biosimulators/__main__.py -> build/bdist.linux-x86_64/wheel/smoldyn/biosimulators copying build/lib.linux-x86_64-cpython-311/smoldyn/biosimulators/__init__.py -> build/bdist.linux-x86_64/wheel/smoldyn/biosimulators running install_egg_info running egg_info writing smoldyn.egg-info/PKG-INFO writing dependency_links to smoldyn.egg-info/dependency_links.txt writing requirements to smoldyn.egg-info/requires.txt writing top-level names to smoldyn.egg-info/top_level.txt reading manifest file 'smoldyn.egg-info/SOURCES.txt' writing manifest file 'smoldyn.egg-info/SOURCES.txt' Copying smoldyn.egg-info to build/bdist.linux-x86_64/wheel/smoldyn-2.67.3-py3.11.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/smoldyn-2.67.3.dist-info/WHEEL creating '/builddir/build/BUILD/Smoldyn-2.67.3/build/smoldyn-2.67.3-cp311-cp311-linux_x86_64.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'smoldyn/__init__.py' adding 'smoldyn/__main__.py' adding 'smoldyn/_smoldyn.cpython-311-x86_64-linux-gnu.so' adding 'smoldyn/smoldyn.py' adding 'smoldyn/types.py' adding 'smoldyn/utils.py' adding 'smoldyn/biosimulators/__init__.py' adding 'smoldyn/biosimulators/__main__.py' adding 'smoldyn/biosimulators/_version.py' adding 'smoldyn/biosimulators/combine.py' adding 'smoldyn/biosimulators/data_model.py' adding 'smoldyn/biosimulators/utils.py' adding 'smoldyn-2.67.3.dist-info/METADATA' adding 'smoldyn-2.67.3.dist-info/WHEEL' adding 'smoldyn-2.67.3.dist-info/top_level.txt' adding 'smoldyn-2.67.3.dist-info/RECORD' removing build/bdist.linux-x86_64/wheel make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [100%] Built target wheel make[1]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/Smoldyn-2.67.3/build/CMakeFiles 0 /usr/bin/make -f CMakeFiles/Makefile2 preinstall make[1]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[1]: Nothing to be done for 'preinstall'. make[1]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64/usr/bin/smoldyn -- Installing: /builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64/usr/lib64/libsmoldyn_shared.so.2.67.3 -- Installing: /builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64/usr/lib64/libsmoldyn_shared.so.2 -- Installing: /builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64/usr/lib64/libsmoldyn_shared.so -- Installing: /builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64/usr/lib64/libsmoldyn_static.a -- Installing: /builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64/usr/include/smoldyn/libsmoldyn.h -- Installing: /builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64/usr/include/smoldyn/smoldyn.h -- Installing: /builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64/usr/include/smoldyn/smoldynconfigure.h make: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' + pushd build/py ~/build/BUILD/Smoldyn-2.67.3/build/py ~/build/BUILD/Smoldyn-2.67.3 + mkdir -p /builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64/usr/lib64/python3.11/site-packages + cp -a smoldyn smoldyn.egg-info /builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64/usr/lib64/python3.11/site-packages/ + popd ~/build/BUILD/Smoldyn-2.67.3 + /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 2.67.3-3.fc38 --unique-debug-suffix -2.67.3-3.fc38.x86_64 --unique-debug-src-base smoldyn-2.67.3-3.fc38.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/Smoldyn-2.67.3 extracting debug info from /builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64/usr/lib64/libsmoldyn_shared.so.2.67.3 extracting debug info from /builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64/usr/bin/smoldyn original debug info size: 4988kB, size after compression: 4576kB /usr/bin/sepdebugcrcfix: Updated 2 CRC32s, 0 CRC32s did match. 3516 blocks + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 Bytecompiling .py files below /builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64/usr/lib64/python3.11 using python3.11 + /usr/lib/rpm/redhat/brp-python-hardlink Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.Gkbrmw + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd Smoldyn-2.67.3 + cd build + export LD_LIBRARY_PATH=/builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64/usr/lib64 + LD_LIBRARY_PATH=/builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64/usr/lib64 + export PYTHONPATH=/builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64/usr/lib64/python3.11/site-packages + PYTHONPATH=/builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64/usr/lib64/python3.11/site-packages + xvfb-run ctest -j1 -VV -R 'test_api|test_sanity|test_biosimulator' --output-on-failure --debug /builddir/build/BUILD/cmake-3.24.1/Source/cmCTest.cxx:420 Here: 420 /builddir/build/BUILD/cmake-3.24.1/Source/cmCTest.cxx:705 UpdateCTestConfiguration from :/builddir/build/BUILD/Smoldyn-2.67.3/build/DartConfiguration.tcl /builddir/build/BUILD/cmake-3.24.1/Source/cmCTest.cxx:432 Here: 432 /builddir/build/BUILD/cmake-3.24.1/Source/cmCTest.cxx:3015 * Read custom CTest configuration directory: /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/cmake-3.24.1/Source/cmCTest.cxx:3020 * Check for file: /builddir/build/BUILD/Smoldyn-2.67.3/build/CTestCustom.cmake /builddir/build/BUILD/cmake-3.24.1/Source/cmCTest.cxx:3040 * Check for file: /builddir/build/BUILD/Smoldyn-2.67.3/build/CTestCustom.ctest /builddir/build/BUILD/cmake-3.24.1/Source/cmCTest.cxx:705 UpdateCTestConfiguration from :/builddir/build/BUILD/Smoldyn-2.67.3/build/DartConfiguration.tcl /builddir/build/BUILD/cmake-3.24.1/Source/CTest/cmCTestTestHandler.cxx:398 Test project /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/cmake-3.24.1/Source/CTest/cmCTestTestHandler.cxx:1778 Constructing a list of tests /builddir/build/BUILD/cmake-3.24.1/Source/CTest/cmCTestTestHandler.cxx:2382 Add test: test_actions /builddir/build/BUILD/cmake-3.24.1/Source/CTest/cmCTestTestHandler.cxx:2425 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.24.1/Source/CTest/cmCTestTestHandler.cxx:2382 Add test: test_api /builddir/build/BUILD/cmake-3.24.1/Source/CTest/cmCTestTestHandler.cxx:2425 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.24.1/Source/CTest/cmCTestTestHandler.cxx:2382 Add test: test_biosimulators /builddir/build/BUILD/cmake-3.24.1/Source/CTest/cmCTestTestHandler.cxx:2425 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.24.1/Source/CTest/cmCTestTestHandler.cxx:2382 Add test: test_concurrent_simulation /builddir/build/BUILD/cmake-3.24.1/Source/CTest/cmCTestTestHandler.cxx:2425 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.24.1/Source/CTest/cmCTestTestHandler.cxx:2382 Add test: test_connect_func /builddir/build/BUILD/cmake-3.24.1/Source/CTest/cmCTestTestHandler.cxx:2425 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.24.1/Source/CTest/cmCTestTestHandler.cxx:2382 Add test: test_connect_var /builddir/build/BUILD/cmake-3.24.1/Source/CTest/cmCTestTestHandler.cxx:2425 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.24.1/Source/CTest/cmCTestTestHandler.cxx:2382 Add test: test_data_in_array /builddir/build/BUILD/cmake-3.24.1/Source/CTest/cmCTestTestHandler.cxx:2425 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.24.1/Source/CTest/cmCTestTestHandler.cxx:2382 Add test: test_data_outputfile /builddir/build/BUILD/cmake-3.24.1/Source/CTest/cmCTestTestHandler.cxx:2425 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.24.1/Source/CTest/cmCTestTestHandler.cxx:2382 Add test: test_getters /builddir/build/BUILD/cmake-3.24.1/Source/CTest/cmCTestTestHandler.cxx:2425 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.24.1/Source/CTest/cmCTestTestHandler.cxx:2382 Add test: test_issue_118 /builddir/build/BUILD/cmake-3.24.1/Source/CTest/cmCTestTestHandler.cxx:2425 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.24.1/Source/CTest/cmCTestTestHandler.cxx:2382 Add test: test_libsmoldyn /builddir/build/BUILD/cmake-3.24.1/Source/CTest/cmCTestTestHandler.cxx:2425 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.24.1/Source/CTest/cmCTestTestHandler.cxx:2382 Add test: test_multiple_iterations /builddir/build/BUILD/cmake-3.24.1/Source/CTest/cmCTestTestHandler.cxx:2425 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.24.1/Source/CTest/cmCTestTestHandler.cxx:2382 Add test: test_prd_placement /builddir/build/BUILD/cmake-3.24.1/Source/CTest/cmCTestTestHandler.cxx:2425 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.24.1/Source/CTest/cmCTestTestHandler.cxx:2382 Add test: test_sanity /builddir/build/BUILD/cmake-3.24.1/Source/CTest/cmCTestTestHandler.cxx:2425 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.24.1/Source/CTest/cmCTestTestHandler.cxx:2382 Add test: test_sim_from_file /builddir/build/BUILD/cmake-3.24.1/Source/CTest/cmCTestTestHandler.cxx:2425 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.24.1/Source/CTest/cmCTestTestHandler.cxx:1829 Done constructing a list of tests /builddir/build/BUILD/cmake-3.24.1/Source/CTest/cmCTestTestHandler.cxx:973 Updating test list for fixtures /builddir/build/BUILD/cmake-3.24.1/Source/CTest/cmCTestTestHandler.cxx:1196 Added 0 tests to meet fixture requirements /builddir/build/BUILD/cmake-3.24.1/Source/cmCTest.cxx:306 Current_Time: Sep 01 16:53 UTC /builddir/build/BUILD/cmake-3.24.1/Source/cmCTest.cxx:306 Current_Time: Sep 01 16:53 UTC /builddir/build/BUILD/cmake-3.24.1/Source/CTest/cmCTestMultiProcessHandler.cxx:1412 Checking test dependency graph... /builddir/build/BUILD/cmake-3.24.1/Source/CTest/cmCTestMultiProcessHandler.cxx:1441 Checking test dependency graph end /builddir/build/BUILD/cmake-3.24.1/Source/CTest/cmCTestMultiProcessHandler.cxx:167 test 2 /builddir/build/BUILD/cmake-3.24.1/Source/CTest/cmCTestRunTest.cxx:522 Start 2: test_api /builddir/build/BUILD/cmake-3.24.1/Source/CTest/cmCTestRunTest.cxx:691 2: Test command: /usr/bin/python3.11 "/builddir/build/BUILD/Smoldyn-2.67.3/tests/test_api.py" /builddir/build/BUILD/cmake-3.24.1/Source/CTest/cmCTestRunTest.cxx:699 2: Working Directory: /builddir/build/BUILD/Smoldyn-2.67.3/tests /builddir/build/BUILD/cmake-3.24.1/Source/CTest/cmCTestRunTest.cxx:707 2: Environment variables: /builddir/build/BUILD/cmake-3.24.1/Source/CTest/cmCTestRunTest.cxx:712 2: PYTHONPATH=/builddir/build/BUILD/Smoldyn-2.67.3/build/py /builddir/build/BUILD/cmake-3.24.1/Source/CTest/cmCTestRunTest.cxx:712 2: SMOLDYN_NO_PROMPT=1 /builddir/build/BUILD/cmake-3.24.1/Source/cmCTest.cxx:306 Current_Time: Sep 01 16:53 UTC /builddir/build/BUILD/cmake-3.24.1/Source/CTest/cmCTestRunTest.cxx:781 2: Test timeout computed to be: 10000000 /builddir/build/BUILD/cmake-3.24.1/Source/CTest/cmCTestRunTest.cxx:1071 1/3 Test #2: test_api ......................... /builddir/build/BUILD/cmake-3.24.1/Source/CTest/cmCTestRunTest.cxx:1074 Testing test_api ... /builddir/build/BUILD/cmake-3.24.1/Source/CTest/cmCTestRunTest.cxx:259 Passed 0.24 sec /builddir/build/BUILD/cmake-3.24.1/Source/cmCTest.cxx:306 Current_Time: Sep 01 16:53 UTC /builddir/build/BUILD/cmake-3.24.1/Source/CTest/cmCTestMultiProcessHandler.cxx:167 test 3 /builddir/build/BUILD/cmake-3.24.1/Source/CTest/cmCTestRunTest.cxx:522 Start 3: test_biosimulators /builddir/build/BUILD/cmake-3.24.1/Source/CTest/cmCTestRunTest.cxx:691 3: Test command: /usr/bin/python3.11 "/builddir/build/BUILD/Smoldyn-2.67.3/tests/test_biosimulators.py" /builddir/build/BUILD/cmake-3.24.1/Source/CTest/cmCTestRunTest.cxx:699 3: Working Directory: /builddir/build/BUILD/Smoldyn-2.67.3/tests /builddir/build/BUILD/cmake-3.24.1/Source/CTest/cmCTestRunTest.cxx:707 3: Environment variables: /builddir/build/BUILD/cmake-3.24.1/Source/CTest/cmCTestRunTest.cxx:712 3: PYTHONPATH=/builddir/build/BUILD/Smoldyn-2.67.3/build/py /builddir/build/BUILD/cmake-3.24.1/Source/CTest/cmCTestRunTest.cxx:712 3: SMOLDYN_NO_PROMPT=1 /builddir/build/BUILD/cmake-3.24.1/Source/cmCTest.cxx:306 Current_Time: Sep 01 16:53 UTC /builddir/build/BUILD/cmake-3.24.1/Source/CTest/cmCTestRunTest.cxx:781 3: Test timeout computed to be: 10000000 /builddir/build/BUILD/cmake-3.24.1/Source/CTest/cmCTestRunTest.cxx:46 3: ssssssssssssssssssssssss /builddir/build/BUILD/cmake-3.24.1/Source/CTest/cmCTestRunTest.cxx:46 3: ---------------------------------------------------------------------- /builddir/build/BUILD/cmake-3.24.1/Source/CTest/cmCTestRunTest.cxx:46 3: Ran 24 tests in 0.001s /builddir/build/BUILD/cmake-3.24.1/Source/CTest/cmCTestRunTest.cxx:46 3: /builddir/build/BUILD/cmake-3.24.1/Source/CTest/cmCTestRunTest.cxx:46 3: OK (skipped=24) /builddir/build/BUILD/cmake-3.24.1/Source/CTest/cmCTestRunTest.cxx:1071 2/3 Test #3: test_biosimulators ............... /builddir/build/BUILD/cmake-3.24.1/Source/CTest/cmCTestRunTest.cxx:1074 Testing test_biosimulators ... /builddir/build/BUILD/cmake-3.24.1/Source/CTest/cmCTestRunTest.cxx:259 Passed 0.44 sec /builddir/build/BUILD/cmake-3.24.1/Source/cmCTest.cxx:306 Current_Time: Sep 01 16:53 UTC /builddir/build/BUILD/cmake-3.24.1/Source/CTest/cmCTestMultiProcessHandler.cxx:167 test 14 /builddir/build/BUILD/cmake-3.24.1/Source/CTest/cmCTestRunTest.cxx:522 Start 14: test_sanity /builddir/build/BUILD/cmake-3.24.1/Source/CTest/cmCTestRunTest.cxx:691 14: Test command: /usr/bin/python3.11 "/builddir/build/BUILD/Smoldyn-2.67.3/tests/test_sanity.py" /builddir/build/BUILD/cmake-3.24.1/Source/CTest/cmCTestRunTest.cxx:699 14: Working Directory: /builddir/build/BUILD/Smoldyn-2.67.3/tests /builddir/build/BUILD/cmake-3.24.1/Source/CTest/cmCTestRunTest.cxx:707 14: Environment variables: /builddir/build/BUILD/cmake-3.24.1/Source/CTest/cmCTestRunTest.cxx:712 14: PYTHONPATH=/builddir/build/BUILD/Smoldyn-2.67.3/build/py /builddir/build/BUILD/cmake-3.24.1/Source/CTest/cmCTestRunTest.cxx:712 14: SMOLDYN_NO_PROMPT=1 /builddir/build/BUILD/cmake-3.24.1/Source/cmCTest.cxx:306 Current_Time: Sep 01 16:53 UTC /builddir/build/BUILD/cmake-3.24.1/Source/CTest/cmCTestRunTest.cxx:781 14: Test timeout computed to be: 10000000 /builddir/build/BUILD/cmake-3.24.1/Source/CTest/cmCTestRunTest.cxx:46 14: Using smoldyn from /builddir/build/BUILD/Smoldyn-2.67.3/build/py/smoldyn/__init__.py /builddir/build/BUILD/cmake-3.24.1/Source/CTest/cmCTestRunTest.cxx:46 14: test_newcursim /builddir/build/BUILD/cmake-3.24.1/Source/CTest/cmCTestRunTest.cxx:46 14: /builddir/build/BUILD/cmake-3.24.1/Source/CTest/cmCTestRunTest.cxx:46 14: Testing test_get_err /builddir/build/BUILD/cmake-3.24.1/Source/CTest/cmCTestRunTest.cxx:46 14: (, '') /builddir/build/BUILD/cmake-3.24.1/Source/CTest/cmCTestRunTest.cxx:1071 3/3 Test #14: test_sanity ...................... /builddir/build/BUILD/cmake-3.24.1/Source/CTest/cmCTestRunTest.cxx:1074 Testing test_sanity ... /builddir/build/BUILD/cmake-3.24.1/Source/CTest/cmCTestRunTest.cxx:259 Passed 0.20 sec /builddir/build/BUILD/cmake-3.24.1/Source/cmCTest.cxx:306 Current_Time: Sep 01 16:53 UTC /builddir/build/BUILD/cmake-3.24.1/Source/cmCTest.cxx:306 Current_Time: Sep 01 16:53 UTC /builddir/build/BUILD/cmake-3.24.1/Source/cmCTest.cxx:306 Current_Time: Sep 01 16:53 UTC /builddir/build/BUILD/cmake-3.24.1/Source/CTest/cmCTestTestHandler.cxx:437 The following tests passed: /builddir/build/BUILD/cmake-3.24.1/Source/CTest/cmCTestTestHandler.cxx:442 test_api /builddir/build/BUILD/cmake-3.24.1/Source/CTest/cmCTestTestHandler.cxx:442 test_biosimulators /builddir/build/BUILD/cmake-3.24.1/Source/CTest/cmCTestTestHandler.cxx:442 test_sanity /builddir/build/BUILD/cmake-3.24.1/Source/CTest/cmCTestTestHandler.cxx:602 100% tests passed, 0 tests failed out of 3 /builddir/build/BUILD/cmake-3.24.1/Source/CTest/cmCTestTestHandler.cxx:618 Total Test time (real) = 0.88 sec + RPM_EC=0 ++ jobs -p + exit 0 Processing files: smoldyn-2.67.3-3.fc38.x86_64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.1g4TcG + umask 022 + cd /builddir/build/BUILD + cd Smoldyn-2.67.3 + DOCDIR=/builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64/usr/share/doc/smoldyn + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64/usr/share/doc/smoldyn + cp -pr Using-Smoldyn-with-SED-ML-COMBINE-BioSimulators.md /builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64/usr/share/doc/smoldyn + cp -pr README.md /builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64/usr/share/doc/smoldyn + RPM_EC=0 ++ jobs -p + exit 0 Provides: bundled(SFMT) = 1.3.3 smoldyn = 2.67.3-3.fc38 smoldyn(x86-64) = 2.67.3-3.fc38 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libc.so.6()(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.4)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libsmoldyn_shared.so.2()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) rtld(GNU_HASH) Processing files: smoldyn-doc-2.67.3-3.fc38.noarch Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.IzkoTR + umask 022 + cd /builddir/build/BUILD + cd Smoldyn-2.67.3 + DOCDIR=/builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64/usr/share/doc/smoldyn-doc + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64/usr/share/doc/smoldyn-doc + cp -pr docs/BioNetGen docs/CMakeLists.txt docs/Doxyfile.in docs/README.md docs/SmolCrowd docs/SmolEmulate docs/Smoldyn docs/_static docs/build_doxygen docs/conf.py docs/doxygen docs/examples docs/index.rst docs/libSteve docs/python docs/requirements.txt docs/tikz docs/user docs/wrl2smol /builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64/usr/share/doc/smoldyn-doc + RPM_EC=0 ++ jobs -p + exit 0 Provides: smoldyn-doc = 2.67.3-3.fc38 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: smoldyn-libs-2.67.3-3.fc38.x86_64 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.77eFDr + umask 022 + cd /builddir/build/BUILD + cd Smoldyn-2.67.3 + LICENSEDIR=/builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64/usr/share/licenses/smoldyn-libs + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64/usr/share/licenses/smoldyn-libs + cp -pr License.txt /builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64/usr/share/licenses/smoldyn-libs + cp -pr source/libSteve/SFMT/SFMT-LICENSE.txt /builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64/usr/share/licenses/smoldyn-libs + cp -pr LICENSE /builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64/usr/share/licenses/smoldyn-libs + RPM_EC=0 ++ jobs -p + exit 0 Provides: libsmoldyn_shared.so.2()(64bit) smoldyn-libs = 2.67.3-3.fc38 smoldyn-libs(x86-64) = 2.67.3-3.fc38 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libGL.so.1()(64bit) libGLU.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_2.7)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libglut.so.3()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libtiff.so.5()(64bit) libtiff.so.5(LIBTIFF_4.0)(64bit) rtld(GNU_HASH) Processing files: smoldyn-libs-devel-2.67.3-3.fc38.x86_64 Provides: smoldyn-libs-devel = 2.67.3-3.fc38 smoldyn-libs-devel(x86-64) = 2.67.3-3.fc38 smoldyn-libs-static = 0:2.67.3-3.fc38 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libsmoldyn_shared.so.2()(64bit) Processing files: python3-smoldyn-2.67.3-3.fc38.x86_64 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.ia5hnG + umask 022 + cd /builddir/build/BUILD + cd Smoldyn-2.67.3 + LICENSEDIR=/builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64/usr/share/licenses/python3-smoldyn + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64/usr/share/licenses/python3-smoldyn + cp -pr License.txt /builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64/usr/share/licenses/python3-smoldyn + cp -pr source/libSteve/SFMT/SFMT-LICENSE.txt /builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64/usr/share/licenses/python3-smoldyn + cp -pr LICENSE /builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64/usr/share/licenses/python3-smoldyn + RPM_EC=0 ++ jobs -p + exit 0 Provides: python-smoldyn = 2.67.3-3.fc38 python3-smoldyn = 2.67.3-3.fc38 python3-smoldyn(x86-64) = 2.67.3-3.fc38 python3.11-smoldyn = 2.67.3-3.fc38 python3.11dist(smoldyn) = 2.67.3 python3dist(smoldyn) = 2.67.3 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libGL.so.1()(64bit) libGLU.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_2.7)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libglut.so.3()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.13)(64bit) libstdc++.so.6(CXXABI_1.3.2)(64bit) libstdc++.so.6(CXXABI_1.3.3)(64bit) libstdc++.so.6(CXXABI_1.3.5)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libtiff.so.5()(64bit) libtiff.so.5(LIBTIFF_4.0)(64bit) python(abi) = 3.11 rtld(GNU_HASH) Obsoletes: python-smoldyn < 2.67.3-3.fc38 Processing files: smoldyn-debugsource-2.67.3-3.fc38.x86_64 Provides: smoldyn-debugsource = 2.67.3-3.fc38 smoldyn-debugsource(x86-64) = 2.67.3-3.fc38 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: smoldyn-debuginfo-2.67.3-3.fc38.x86_64 Provides: debuginfo(build-id) = dc7148ae1367843bac76f7a227cc2534617cdd27 smoldyn-debuginfo = 2.67.3-3.fc38 smoldyn-debuginfo(x86-64) = 2.67.3-3.fc38 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: smoldyn-debugsource(x86-64) = 2.67.3-3.fc38 Processing files: smoldyn-libs-debuginfo-2.67.3-3.fc38.x86_64 Provides: debuginfo(build-id) = 35cd08b209b2ede9fe180d519c54021ffdd48fe6 libsmoldyn_shared.so.2.67.3-2.67.3-3.fc38.x86_64.debug()(64bit) smoldyn-libs-debuginfo = 2.67.3-3.fc38 smoldyn-libs-debuginfo(x86-64) = 2.67.3-3.fc38 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: smoldyn-debugsource(x86-64) = 2.67.3-3.fc38 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64 Wrote: /builddir/build/RPMS/smoldyn-libs-debuginfo-2.67.3-3.fc38.x86_64.rpm Wrote: /builddir/build/RPMS/smoldyn-libs-devel-2.67.3-3.fc38.x86_64.rpm Wrote: /builddir/build/RPMS/python3-smoldyn-2.67.3-3.fc38.x86_64.rpm Wrote: /builddir/build/RPMS/smoldyn-debugsource-2.67.3-3.fc38.x86_64.rpm Wrote: /builddir/build/RPMS/smoldyn-libs-2.67.3-3.fc38.x86_64.rpm Wrote: /builddir/build/RPMS/smoldyn-debuginfo-2.67.3-3.fc38.x86_64.rpm Wrote: /builddir/build/RPMS/smoldyn-2.67.3-3.fc38.x86_64.rpm Wrote: /builddir/build/RPMS/smoldyn-doc-2.67.3-3.fc38.noarch.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.oX7ydM + umask 022 + cd /builddir/build/BUILD + cd Smoldyn-2.67.3 + /usr/bin/rm -rf /builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64 + RPM_EC=0 ++ jobs -p + exit 0 Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.CA5r2M + umask 022 + cd /builddir/build/BUILD + rm -rf Smoldyn-2.67.3 Smoldyn-2.67.3.gemspec + RPM_EC=0 ++ jobs -p + exit 0 Finish: rpmbuild smoldyn-2.67.3-3.fc38.src.rpm Finish: build phase for smoldyn-2.67.3-3.fc38.src.rpm INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-x86_64-1662051019.772805/root/var/log/dnf.rpm.log /var/lib/mock/fedora-rawhide-x86_64-1662051019.772805/root/var/log/dnf.librepo.log /var/lib/mock/fedora-rawhide-x86_64-1662051019.772805/root/var/log/dnf.log INFO: Done(/var/lib/copr-rpmbuild/results/smoldyn-2.67.3-3.fc38.src.rpm) Config(child) 2 minutes 18 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool