Warning: Permanently added '2620:52:3:1:dead:beef:cafe:c114' (ED25519) to the list of known hosts.
Running: /usr/bin/copr-rpmbuild --verbose --drop-resultdir --build-id 4801738 --chroot fedora-rawhide-x86_64 --detached
Version: 0.61
PID: 17661
Logging PID: 17662
Task:
{'appstream': False,
 'background': True,
 'build_id': 4801738,
 'buildroot_pkgs': [],
 'chroot': 'fedora-rawhide-x86_64',
 'enable_net': True,
 'fedora_review': False,
 'git_hash': '1797019170792d4e94170ff5ade0094f1c8a4151',
 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/thrnciar/mpb.73/pymol',
 'isolation': 'default',
 'memory_reqs': 2048,
 'package_name': 'pymol',
 'package_version': '2.5.0-5',
 'project_dirname': 'mpb.73',
 'project_name': 'mpb.73',
 'project_owner': 'thrnciar',
 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/thrnciar/mpb.73/fedora-rawhide-x86_64/',
            'id': 'copr_base',
            'name': 'Copr repository'}],
 'sandbox': 'thrnciar/mpb.73--thrnciar',
 'source_json': {},
 'source_type': None,
 'submitter': 'thrnciar',
 'tags': [],
 'task_id': '4801738-fedora-rawhide-x86_64',
 'timeout': 108000,
 'uses_devel_repo': False,
 'with_opts': [],
 'without_opts': []}

Running: git clone https://copr-dist-git.fedorainfracloud.org/git/thrnciar/mpb.73/pymol /var/lib/copr-rpmbuild/workspace/workdir-6wgxj3n1/pymol --depth 500 --no-single-branch --recursive

cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/thrnciar/mpb.73/pymol', '/var/lib/copr-rpmbuild/workspace/workdir-6wgxj3n1/pymol', '--depth', '500', '--no-single-branch', '--recursive']
cwd: .
rc: 0
stdout: 
stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-6wgxj3n1/pymol'...

Running: git checkout 1797019170792d4e94170ff5ade0094f1c8a4151

cmd: ['git', 'checkout', '1797019170792d4e94170ff5ade0094f1c8a4151']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-6wgxj3n1/pymol
rc: 0
stdout: 
stderr: Note: switching to '1797019170792d4e94170ff5ade0094f1c8a4151'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by switching back to a branch.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -c with the switch command. Example:

  git switch -c <new-branch-name>

Or undo this operation with:

  git switch -

Turn off this advice by setting config variable advice.detachedHead to false

HEAD is now at 1797019 automatic import of pymol

Running: copr-distgit-client sources
/usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated

cmd: ['copr-distgit-client', 'sources']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-6wgxj3n1/pymol
rc: 0
stdout: 
stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD
INFO: Reading stdout from command: git rev-parse HEAD
INFO: Reading sources specification file: sources
INFO: Downloading pymol-open-source-2.5.0.tar.gz
INFO: Calling: curl -H Pragma: -o pymol-open-source-2.5.0.tar.gz --location --remote-time --show-error --fail https://copr-dist-git.fedorainfracloud.org/repo/pkgs/thrnciar/mpb.73/pymol/pymol-open-source-2.5.0.tar.gz/md5/1c2d43789dd5580958fd75672ecfd8e7/pymol-open-source-2.5.0.tar.gz
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
100  9.9M  100  9.9M    0     0  18.3M      0 --:--:-- --:--:-- --:--:-- 18.3M
INFO: Reading stdout from command: md5sum pymol-open-source-2.5.0.tar.gz
INFO: Downloading pymol.png
INFO: Calling: curl -H Pragma: -o pymol.png --location --remote-time --show-error --fail https://copr-dist-git.fedorainfracloud.org/repo/pkgs/thrnciar/mpb.73/pymol/pymol.png/md5/3bbd85dbd40f588f505ad988b6df2933/pymol.png
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
100 19466  100 19466    0     0   243k      0 --:--:-- --:--:-- --:--:--  243k
INFO: Reading stdout from command: md5sum pymol.png

Running (timeout=108000): unbuffer mock --buildsrpm --spec /var/lib/copr-rpmbuild/workspace/workdir-6wgxj3n1/pymol/pymol.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-6wgxj3n1/pymol --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1662040121.852928 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
INFO: mock.py version 3.1 starting (python version = 3.10.4, NVR = mock-3.1-1.fc35)...
Start(bootstrap): init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish(bootstrap): init plugins
Start: init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish: init plugins
INFO: Signal handler active
Start: run
INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-6wgxj3n1/pymol/pymol.spec)  Config(fedora-rawhide-x86_64)
Start: clean chroot
Finish: clean chroot
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1662040121.852928/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
INFO: enabled HW Info plugin
Mock Version: 3.1
INFO: Mock Version: 3.1
Start(bootstrap): dnf install
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Updating Subscription Management repositories.
Unable to read consumer identity

This system is not registered with an entitlement server. You can use subscription-manager to register.

Copr repository                                  14 MB/s | 1.8 MB     00:00    
fedora                                          5.9 MB/s |  65 MB     00:10    
Dependencies resolved.
================================================================================
 Package                      Arch   Version                    Repo       Size
================================================================================
Installing:
 dnf                          noarch 4.13.0-3.fc37              fedora    464 k
 dnf-plugins-core             noarch 4.2.1-3.fc37               fedora     34 k
Installing dependencies:
 alternatives                 x86_64 1.19-3.fc37                fedora     36 k
 audit-libs                   x86_64 3.0.9-1.fc38               fedora    116 k
 basesystem                   noarch 11-14.fc37                 fedora    7.0 k
 bash                         x86_64 5.1.16-3.fc37              fedora    1.7 M
 bzip2-libs                   x86_64 1.0.8-12.fc37              fedora     41 k
 ca-certificates              noarch 2022.2.54-5.fc37           fedora    829 k
 coreutils                    x86_64 9.1-7.fc38                 fedora    1.1 M
 coreutils-common             x86_64 9.1-7.fc38                 fedora    2.0 M
 crypto-policies              noarch 20220824-2.git2187e9c.fc38 fedora     86 k
 curl                         x86_64 7.84.0-3.fc38              fedora    312 k
 cyrus-sasl-lib               x86_64 2.1.28-8.fc38              fedora    792 k
 dbus-libs                    x86_64 1:1.14.0-5.fc38            fedora    156 k
 dnf-data                     noarch 4.13.0-3.fc37              fedora     42 k
 elfutils-default-yama-scope  noarch 0.187-8.fc38               fedora     16 k
 elfutils-libelf              x86_64 0.187-8.fc38               fedora    197 k
 elfutils-libs                x86_64 0.187-8.fc38               fedora    257 k
 expat                        x86_64 2.4.8-2.fc37               fedora    110 k
 fedora-gpg-keys              noarch 38-0.3                     fedora    125 k
 fedora-release               noarch 38-0.3                     fedora     11 k
 fedora-release-common        noarch 38-0.3                     fedora     22 k
 fedora-release-identity-basic
                              noarch 38-0.3                     fedora     12 k
 fedora-repos                 noarch 38-0.3                     fedora     10 k
 fedora-repos-rawhide         noarch 38-0.3                     fedora    9.7 k
 file-libs                    x86_64 5.42-4.fc38                copr_base 676 k
 filesystem                   x86_64 3.18-2.fc37                fedora    1.1 M
 findutils                    x86_64 1:4.9.0-2.fc37             fedora    492 k
 gawk                         x86_64 5.1.1-4.fc37               fedora    1.0 M
 gdbm-libs                    x86_64 1:1.23-2.fc37              fedora     56 k
 glib2                        x86_64 2.73.3-2.fc38              fedora    2.7 M
 glibc                        x86_64 2.36.9000-2.fc38           fedora    2.1 M
 glibc-common                 x86_64 2.36.9000-2.fc38           fedora    288 k
 glibc-minimal-langpack       x86_64 2.36.9000-2.fc38           fedora     10 k
 gmp                          x86_64 1:6.2.1-3.fc37             fedora    315 k
 gnupg2                       x86_64 2.3.7-3.fc37               fedora    2.5 M
 gnutls                       x86_64 3.7.7-1.fc37               fedora    1.1 M
 gpgme                        x86_64 1.17.0-4.fc37              fedora    210 k
 grep                         x86_64 3.7-4.fc37                 fedora    273 k
 ima-evm-utils                x86_64 1.4-6.fc37                 fedora     63 k
 json-c                       x86_64 0.16-2.fc37                fedora     41 k
 keyutils-libs                x86_64 1.6.1-5.fc37               fedora     31 k
 krb5-libs                    x86_64 1.19.2-11.fc37.1           fedora    727 k
 libacl                       x86_64 2.3.1-4.fc37               fedora     23 k
 libarchive                   x86_64 3.6.1-2.fc37               fedora    397 k
 libassuan                    x86_64 2.5.5-5.fc37               fedora     67 k
 libattr                      x86_64 2.5.1-5.fc37               fedora     18 k
 libb2                        x86_64 0.98.1-7.fc37              fedora     25 k
 libblkid                     x86_64 2.38.1-2.fc38              fedora    107 k
 libbrotli                    x86_64 1.0.9-9.fc38               copr_base 316 k
 libcap                       x86_64 2.48-5.fc37                fedora     67 k
 libcap-ng                    x86_64 0.8.3-3.fc37               fedora     33 k
 libcom_err                   x86_64 1.46.5-3.fc37              fedora     25 k
 libcomps                     x86_64 0.1.18-4.fc37              fedora     76 k
 libcurl                      x86_64 7.84.0-3.fc38              fedora    306 k
 libdnf                       x86_64 0.68.0-1.fc38              fedora    673 k
 libevent                     x86_64 2.1.12-7.fc37              fedora    261 k
 libffi                       x86_64 3.4.2-9.fc37               fedora     37 k
 libfsverity                  x86_64 1.4-8.fc37                 fedora     19 k
 libgcc                       x86_64 12.2.1-1.fc38              fedora    106 k
 libgcrypt                    x86_64 1.10.1-4.fc37              fedora    512 k
 libgomp                      x86_64 12.2.1-1.fc38              fedora    293 k
 libgpg-error                 x86_64 1.45-2.fc37                fedora    227 k
 libidn2                      x86_64 2.3.3-2.fc37               fedora    113 k
 libksba                      x86_64 1.6.0-4.fc37               fedora    157 k
 libmodulemd                  x86_64 2.14.0-4.fc37              fedora    234 k
 libmount                     x86_64 2.38.1-2.fc38              fedora    135 k
 libnghttp2                   x86_64 1.49.0-1.fc38              fedora     74 k
 libnsl2                      x86_64 2.0.0-4.fc37               fedora     30 k
 libpsl                       x86_64 0.21.1-6.fc37              fedora     63 k
 librepo                      x86_64 1.14.4-1.fc38              fedora     94 k
 libreport-filesystem         noarch 2.17.2-1.fc38              fedora     13 k
 libselinux                   x86_64 3.4-5.fc37                 fedora     86 k
 libsemanage                  x86_64 3.4-5.fc37                 fedora    120 k
 libsepol                     x86_64 3.4-3.fc37                 fedora    322 k
 libsigsegv                   x86_64 2.14-3.fc37                fedora     27 k
 libsmartcols                 x86_64 2.38.1-2.fc38              fedora     64 k
 libsolv                      x86_64 0.7.22-3.fc37              fedora    405 k
 libssh                       x86_64 0.9.6-5.fc37               fedora    203 k
 libssh-config                noarch 0.9.6-5.fc37               fedora    7.8 k
 libstdc++                    x86_64 12.2.1-1.fc38              fedora    799 k
 libtasn1                     x86_64 4.18.0-3.fc37              fedora     75 k
 libtirpc                     x86_64 1.3.3-0.fc37               fedora     93 k
 libunistring                 x86_64 1.0-2.fc37                 fedora    549 k
 libuuid                      x86_64 2.38.1-2.fc38              fedora     28 k
 libverto                     x86_64 0.3.2-4.fc37               fedora     21 k
 libxcrypt                    x86_64 4.4.28-3.fc38              fedora    117 k
 libxml2                      x86_64 2.9.14-3.fc37              fedora    752 k
 libyaml                      x86_64 0.2.5-8.fc37               fedora     60 k
 libzstd                      x86_64 1.5.2-3.fc37               fedora    294 k
 lua-libs                     x86_64 5.4.4-4.fc37               fedora    217 k
 lz4-libs                     x86_64 1.9.3-5.fc37               fedora     70 k
 mpdecimal                    x86_64 2.5.1-4.fc37               fedora    102 k
 mpfr                         x86_64 4.1.0-10.fc37              fedora    331 k
 ncurses-base                 noarch 6.3-3.20220501.fc37        fedora     86 k
 ncurses-libs                 x86_64 6.3-3.20220501.fc37        fedora    329 k
 nettle                       x86_64 3.8-2.fc37                 fedora    414 k
 npth                         x86_64 1.6-9.fc37                 fedora     24 k
 openldap                     x86_64 2.6.3-1.fc38               fedora    254 k
 openssl-libs                 x86_64 1:3.0.5-2.fc37             fedora    2.1 M
 p11-kit                      x86_64 0.24.1-3.fc37              fedora    376 k
 p11-kit-trust                x86_64 0.24.1-3.fc37              fedora    138 k
 pcre                         x86_64 8.45-1.fc37.2              fedora    202 k
 pcre2                        x86_64 10.40-1.fc37.1             fedora    236 k
 pcre2-syntax                 noarch 10.40-1.fc37.1             fedora    142 k
 popt                         x86_64 1.19~rc1-4.fc38            fedora     65 k
 publicsuffix-list-dafsa      noarch 20210518-5.fc37            fedora     58 k
 python-pip-wheel             noarch 22.2-1.fc37                fedora    1.4 M
 python-setuptools-wheel      noarch 65.3.0-1.fc38              copr_base 715 k
 python3                      x86_64 3.11.0~rc1-2.fc38          fedora     27 k
 python3-dateutil             noarch 1:2.8.2-4.fc37             fedora    361 k
 python3-dbus                 x86_64 1.2.18-5.fc37              fedora    156 k
 python3-distro               noarch 1.7.0-3.fc37               fedora     48 k
 python3-dnf                  noarch 4.13.0-3.fc37              fedora    605 k
 python3-dnf-plugins-core     noarch 4.2.1-3.fc37               fedora    268 k
 python3-gpg                  x86_64 1.17.0-4.fc37              fedora    298 k
 python3-hawkey               x86_64 0.68.0-1.fc38              fedora    108 k
 python3-libcomps             x86_64 0.1.18-4.fc37              fedora     48 k
 python3-libdnf               x86_64 0.68.0-1.fc38              fedora    818 k
 python3-libs                 x86_64 3.11.0~rc1-2.fc38          fedora    9.6 M
 python3-rpm                  x86_64 4.18.0-0.beta1.4.fc37      fedora     93 k
 python3-six                  noarch 1.16.0-8.fc37              fedora     42 k
 readline                     x86_64 8.1-7.fc37                 fedora    211 k
 rpm                          x86_64 4.18.0-0.beta1.4.fc37      fedora    570 k
 rpm-build-libs               x86_64 4.18.0-0.beta1.4.fc37      fedora     93 k
 rpm-libs                     x86_64 4.18.0-0.beta1.4.fc37      fedora    319 k
 rpm-sign-libs                x86_64 4.18.0-0.beta1.4.fc37      fedora     26 k
 sed                          x86_64 4.8-11.fc37                fedora    306 k
 setup                        noarch 2.14.1-2.fc37              fedora    149 k
 shadow-utils                 x86_64 2:4.12.3-1.fc38            fedora    1.3 M
 sqlite-libs                  x86_64 3.39.2-2.fc37              fedora    657 k
 systemd-libs                 x86_64 251.4-53.fc38              fedora    620 k
 tpm2-tss                     x86_64 3.2.0-3.fc37               fedora    600 k
 tzdata                       noarch 2022c-1.fc38               fedora    717 k
 xz-libs                      x86_64 5.2.5-10.fc37              fedora     92 k
 zchunk-libs                  x86_64 1.2.2-2.fc37               fedora     51 k
 zlib                         x86_64 1.2.12-5.fc38              fedora     94 k

Transaction Summary
================================================================================
Install  137 Packages

Total download size: 56 M
Installed size: 195 M
Downloading Packages:
(1/137): libbrotli-1.0.9-9.fc38.x86_64.rpm      4.8 MB/s | 316 kB     00:00    
(2/137): file-libs-5.42-4.fc38.x86_64.rpm       9.3 MB/s | 676 kB     00:00    
(3/137): python-setuptools-wheel-65.3.0-1.fc38. 8.8 MB/s | 715 kB     00:00    
(4/137): basesystem-11-14.fc37.noarch.rpm        84 kB/s | 7.0 kB     00:00    
(5/137): alternatives-1.19-3.fc37.x86_64.rpm    308 kB/s |  36 kB     00:00    
(6/137): audit-libs-3.0.9-1.fc38.x86_64.rpm     817 kB/s | 116 kB     00:00    
(7/137): bzip2-libs-1.0.8-12.fc37.x86_64.rpm    1.3 MB/s |  41 kB     00:00    
(8/137): ca-certificates-2022.2.54-5.fc37.noarc 9.7 MB/s | 829 kB     00:00    
(9/137): bash-5.1.16-3.fc37.x86_64.rpm           12 MB/s | 1.7 MB     00:00    
(10/137): coreutils-9.1-7.fc38.x86_64.rpm       9.6 MB/s | 1.1 MB     00:00    
(11/137): crypto-policies-20220824-2.git2187e9c 3.4 MB/s |  86 kB     00:00    
(12/137): coreutils-common-9.1-7.fc38.x86_64.rp  33 MB/s | 2.0 MB     00:00    
(13/137): curl-7.84.0-3.fc38.x86_64.rpm         9.4 MB/s | 312 kB     00:00    
(14/137): cyrus-sasl-lib-2.1.28-8.fc38.x86_64.r  21 MB/s | 792 kB     00:00    
(15/137): dbus-libs-1.14.0-5.fc38.x86_64.rpm    5.8 MB/s | 156 kB     00:00    
(16/137): dnf-4.13.0-3.fc37.noarch.rpm           13 MB/s | 464 kB     00:00    
(17/137): dnf-data-4.13.0-3.fc37.noarch.rpm     1.6 MB/s |  42 kB     00:00    
(18/137): dnf-plugins-core-4.2.1-3.fc37.noarch. 1.4 MB/s |  34 kB     00:00    
(19/137): elfutils-default-yama-scope-0.187-8.f 561 kB/s |  16 kB     00:00    
(20/137): elfutils-libs-0.187-8.fc38.x86_64.rpm 7.9 MB/s | 257 kB     00:00    
(21/137): elfutils-libelf-0.187-8.fc38.x86_64.r 3.9 MB/s | 197 kB     00:00    
(22/137): expat-2.4.8-2.fc37.x86_64.rpm         3.0 MB/s | 110 kB     00:00    
(23/137): fedora-gpg-keys-38-0.3.noarch.rpm     5.4 MB/s | 125 kB     00:00    
(24/137): fedora-release-38-0.3.noarch.rpm      556 kB/s |  11 kB     00:00    
(25/137): fedora-release-common-38-0.3.noarch.r 1.0 MB/s |  22 kB     00:00    
(26/137): fedora-release-identity-basic-38-0.3. 590 kB/s |  12 kB     00:00    
(27/137): fedora-repos-38-0.3.noarch.rpm        501 kB/s |  10 kB     00:00    
(28/137): fedora-repos-rawhide-38-0.3.noarch.rp 474 kB/s | 9.7 kB     00:00    
(29/137): filesystem-3.18-2.fc37.x86_64.rpm      28 MB/s | 1.1 MB     00:00    
(30/137): findutils-4.9.0-2.fc37.x86_64.rpm      13 MB/s | 492 kB     00:00    
(31/137): gawk-5.1.1-4.fc37.x86_64.rpm           24 MB/s | 1.0 MB     00:00    
(32/137): gdbm-libs-1.23-2.fc37.x86_64.rpm      2.5 MB/s |  56 kB     00:00    
(33/137): glibc-common-2.36.9000-2.fc38.x86_64.  10 MB/s | 288 kB     00:00    
(34/137): glib2-2.73.3-2.fc38.x86_64.rpm         39 MB/s | 2.7 MB     00:00    
(35/137): glibc-minimal-langpack-2.36.9000-2.fc 458 kB/s |  10 kB     00:00    
(36/137): glibc-2.36.9000-2.fc38.x86_64.rpm      25 MB/s | 2.1 MB     00:00    
(37/137): gmp-6.2.1-3.fc37.x86_64.rpm           8.4 MB/s | 315 kB     00:00    
(38/137): gnupg2-2.3.7-3.fc37.x86_64.rpm         41 MB/s | 2.5 MB     00:00    
(39/137): gpgme-1.17.0-4.fc37.x86_64.rpm        5.6 MB/s | 210 kB     00:00    
(40/137): gnutls-3.7.7-1.fc37.x86_64.rpm         24 MB/s | 1.1 MB     00:00    
(41/137): ima-evm-utils-1.4-6.fc37.x86_64.rpm   2.8 MB/s |  63 kB     00:00    
(42/137): json-c-0.16-2.fc37.x86_64.rpm         1.9 MB/s |  41 kB     00:00    
(43/137): keyutils-libs-1.6.1-5.fc37.x86_64.rpm 1.4 MB/s |  31 kB     00:00    
(44/137): grep-3.7-4.fc37.x86_64.rpm            4.8 MB/s | 273 kB     00:00    
(45/137): krb5-libs-1.19.2-11.fc37.1.x86_64.rpm  21 MB/s | 727 kB     00:00    
(46/137): libacl-2.3.1-4.fc37.x86_64.rpm        1.1 MB/s |  23 kB     00:00    
(47/137): libarchive-3.6.1-2.fc37.x86_64.rpm     15 MB/s | 397 kB     00:00    
(48/137): libassuan-2.5.5-5.fc37.x86_64.rpm     3.0 MB/s |  67 kB     00:00    
(49/137): libattr-2.5.1-5.fc37.x86_64.rpm       869 kB/s |  18 kB     00:00    
(50/137): libb2-0.98.1-7.fc37.x86_64.rpm        1.2 MB/s |  25 kB     00:00    
(51/137): libblkid-2.38.1-2.fc38.x86_64.rpm     4.5 MB/s | 107 kB     00:00    
(52/137): libcap-2.48-5.fc37.x86_64.rpm         3.0 MB/s |  67 kB     00:00    
(53/137): libcap-ng-0.8.3-3.fc37.x86_64.rpm     1.5 MB/s |  33 kB     00:00    
(54/137): libcom_err-1.46.5-3.fc37.x86_64.rpm   1.2 MB/s |  25 kB     00:00    
(55/137): libcomps-0.1.18-4.fc37.x86_64.rpm     3.4 MB/s |  76 kB     00:00    
(56/137): libcurl-7.84.0-3.fc38.x86_64.rpm       11 MB/s | 306 kB     00:00    
(57/137): libdnf-0.68.0-1.fc38.x86_64.rpm        20 MB/s | 673 kB     00:00    
(58/137): libevent-2.1.12-7.fc37.x86_64.rpm     8.5 MB/s | 261 kB     00:00    
(59/137): libffi-3.4.2-9.fc37.x86_64.rpm        1.7 MB/s |  37 kB     00:00    
(60/137): libfsverity-1.4-8.fc37.x86_64.rpm     921 kB/s |  19 kB     00:00    
(61/137): libgcc-12.2.1-1.fc38.x86_64.rpm       4.6 MB/s | 106 kB     00:00    
(62/137): libgcrypt-1.10.1-4.fc37.x86_64.rpm     17 MB/s | 512 kB     00:00    
(63/137): libgomp-12.2.1-1.fc38.x86_64.rpm      9.4 MB/s | 293 kB     00:00    
(64/137): libgpg-error-1.45-2.fc37.x86_64.rpm   7.8 MB/s | 227 kB     00:00    
(65/137): libidn2-2.3.3-2.fc37.x86_64.rpm       4.8 MB/s | 113 kB     00:00    
(66/137): libksba-1.6.0-4.fc37.x86_64.rpm       5.5 MB/s | 157 kB     00:00    
(67/137): libmodulemd-2.14.0-4.fc37.x86_64.rpm  8.3 MB/s | 234 kB     00:00    
(68/137): libmount-2.38.1-2.fc38.x86_64.rpm     5.1 MB/s | 135 kB     00:00    
(69/137): libnsl2-2.0.0-4.fc37.x86_64.rpm       1.4 MB/s |  30 kB     00:00    
(70/137): libnghttp2-1.49.0-1.fc38.x86_64.rpm   3.2 MB/s |  74 kB     00:00    
(71/137): libpsl-0.21.1-6.fc37.x86_64.rpm       2.7 MB/s |  63 kB     00:00    
(72/137): libreport-filesystem-2.17.2-1.fc38.no 617 kB/s |  13 kB     00:00    
(73/137): librepo-1.14.4-1.fc38.x86_64.rpm      4.0 MB/s |  94 kB     00:00    
(74/137): libselinux-3.4-5.fc37.x86_64.rpm      3.6 MB/s |  86 kB     00:00    
(75/137): libsemanage-3.4-5.fc37.x86_64.rpm     4.8 MB/s | 120 kB     00:00    
(76/137): libsigsegv-2.14-3.fc37.x86_64.rpm     1.1 MB/s |  27 kB     00:00    
(77/137): libsepol-3.4-3.fc37.x86_64.rpm         11 MB/s | 322 kB     00:00    
(78/137): libsmartcols-2.38.1-2.fc38.x86_64.rpm 2.9 MB/s |  64 kB     00:00    
(79/137): libssh-0.9.6-5.fc37.x86_64.rpm        7.7 MB/s | 203 kB     00:00    
(80/137): libsolv-0.7.22-3.fc37.x86_64.rpm       13 MB/s | 405 kB     00:00    
(81/137): libssh-config-0.9.6-5.fc37.noarch.rpm 370 kB/s | 7.8 kB     00:00    
(82/137): libtasn1-4.18.0-3.fc37.x86_64.rpm     2.8 MB/s |  75 kB     00:00    
(83/137): libstdc++-12.2.1-1.fc38.x86_64.rpm     24 MB/s | 799 kB     00:00    
(84/137): libtirpc-1.3.3-0.fc37.x86_64.rpm      4.0 MB/s |  93 kB     00:00    
(85/137): libuuid-2.38.1-2.fc38.x86_64.rpm      1.2 MB/s |  28 kB     00:00    
(86/137): libverto-0.3.2-4.fc37.x86_64.rpm      819 kB/s |  21 kB     00:00    
(87/137): libunistring-1.0-2.fc37.x86_64.rpm     16 MB/s | 549 kB     00:00    
(88/137): libxcrypt-4.4.28-3.fc38.x86_64.rpm    5.0 MB/s | 117 kB     00:00    
(89/137): libyaml-0.2.5-8.fc37.x86_64.rpm       1.8 MB/s |  60 kB     00:00    
(90/137): libzstd-1.5.2-3.fc37.x86_64.rpm        10 MB/s | 294 kB     00:00    
(91/137): lua-libs-5.4.4-4.fc37.x86_64.rpm      8.3 MB/s | 217 kB     00:00    
(92/137): libxml2-2.9.14-3.fc37.x86_64.rpm       12 MB/s | 752 kB     00:00    
(93/137): lz4-libs-1.9.3-5.fc37.x86_64.rpm      3.1 MB/s |  70 kB     00:00    
(94/137): mpdecimal-2.5.1-4.fc37.x86_64.rpm     4.3 MB/s | 102 kB     00:00    
(95/137): mpfr-4.1.0-10.fc37.x86_64.rpm          11 MB/s | 331 kB     00:00    
(96/137): ncurses-base-6.3-3.20220501.fc37.noar 3.6 MB/s |  86 kB     00:00    
(97/137): ncurses-libs-6.3-3.20220501.fc37.x86_  12 MB/s | 329 kB     00:00    
(98/137): npth-1.6-9.fc37.x86_64.rpm            1.1 MB/s |  24 kB     00:00    
(99/137): nettle-3.8-2.fc37.x86_64.rpm           14 MB/s | 414 kB     00:00    
(100/137): openldap-2.6.3-1.fc38.x86_64.rpm     7.5 MB/s | 254 kB     00:00    
(101/137): p11-kit-0.24.1-3.fc37.x86_64.rpm     9.8 MB/s | 376 kB     00:00    
(102/137): openssl-libs-3.0.5-2.fc37.x86_64.rpm  42 MB/s | 2.1 MB     00:00    
(103/137): p11-kit-trust-0.24.1-3.fc37.x86_64.r 5.2 MB/s | 138 kB     00:00    
(104/137): pcre-8.45-1.fc37.2.x86_64.rpm        6.9 MB/s | 202 kB     00:00    
(105/137): pcre2-10.40-1.fc37.1.x86_64.rpm      9.4 MB/s | 236 kB     00:00    
(106/137): pcre2-syntax-10.40-1.fc37.1.noarch.r 6.0 MB/s | 142 kB     00:00    
(107/137): popt-1.19~rc1-4.fc38.x86_64.rpm      2.9 MB/s |  65 kB     00:00    
(108/137): publicsuffix-list-dafsa-20210518-5.f 2.6 MB/s |  58 kB     00:00    
(109/137): python3-3.11.0~rc1-2.fc38.x86_64.rpm 1.1 MB/s |  27 kB     00:00    
(110/137): python-pip-wheel-22.2-1.fc37.noarch.  35 MB/s | 1.4 MB     00:00    
(111/137): python3-dateutil-2.8.2-4.fc37.noarch  13 MB/s | 361 kB     00:00    
(112/137): python3-dbus-1.2.18-5.fc37.x86_64.rp 6.4 MB/s | 156 kB     00:00    
(113/137): python3-distro-1.7.0-3.fc37.noarch.r 2.0 MB/s |  48 kB     00:00    
(114/137): python3-dnf-4.13.0-3.fc37.noarch.rpm  21 MB/s | 605 kB     00:00    
(115/137): python3-dnf-plugins-core-4.2.1-3.fc3 9.9 MB/s | 268 kB     00:00    
(116/137): python3-gpg-1.17.0-4.fc37.x86_64.rpm 9.4 MB/s | 298 kB     00:00    
(117/137): python3-hawkey-0.68.0-1.fc38.x86_64. 4.7 MB/s | 108 kB     00:00    
(118/137): python3-libcomps-0.1.18-4.fc37.x86_6 2.2 MB/s |  48 kB     00:00    
(119/137): python3-libdnf-0.68.0-1.fc38.x86_64.  18 MB/s | 818 kB     00:00    
(120/137): python3-rpm-4.18.0-0.beta1.4.fc37.x8 2.8 MB/s |  93 kB     00:00    
(121/137): python3-six-1.16.0-8.fc37.noarch.rpm 1.4 MB/s |  42 kB     00:00    
(122/137): readline-8.1-7.fc37.x86_64.rpm       5.1 MB/s | 211 kB     00:00    
(123/137): rpm-build-libs-4.18.0-0.beta1.4.fc37 2.1 MB/s |  93 kB     00:00    
(124/137): rpm-4.18.0-0.beta1.4.fc37.x86_64.rpm 8.1 MB/s | 570 kB     00:00    
(125/137): python3-libs-3.11.0~rc1-2.fc38.x86_6  59 MB/s | 9.6 MB     00:00    
(126/137): rpm-sign-libs-4.18.0-0.beta1.4.fc37. 1.2 MB/s |  26 kB     00:00    
(127/137): rpm-libs-4.18.0-0.beta1.4.fc37.x86_6  10 MB/s | 319 kB     00:00    
(128/137): setup-2.14.1-2.fc37.noarch.rpm       6.1 MB/s | 149 kB     00:00    
(129/137): sed-4.8-11.fc37.x86_64.rpm            11 MB/s | 306 kB     00:00    
(130/137): shadow-utils-4.12.3-1.fc38.x86_64.rp  34 MB/s | 1.3 MB     00:00    
(131/137): sqlite-libs-3.39.2-2.fc37.x86_64.rpm  18 MB/s | 657 kB     00:00    
(132/137): systemd-libs-251.4-53.fc38.x86_64.rp  16 MB/s | 620 kB     00:00    
(133/137): tpm2-tss-3.2.0-3.fc37.x86_64.rpm      18 MB/s | 600 kB     00:00    
(134/137): xz-libs-5.2.5-10.fc37.x86_64.rpm     3.4 MB/s |  92 kB     00:00    
(135/137): tzdata-2022c-1.fc38.noarch.rpm        22 MB/s | 717 kB     00:00    
(136/137): zchunk-libs-1.2.2-2.fc37.x86_64.rpm  2.1 MB/s |  51 kB     00:00    
(137/137): zlib-1.2.12-5.fc38.x86_64.rpm        3.2 MB/s |  94 kB     00:00    
--------------------------------------------------------------------------------
Total                                            33 MB/s |  56 MB     00:01     
fedora                                          1.6 MB/s | 1.6 kB     00:00    
Importing GPG key 0xEB10B464:
 Userid     : "Fedora (38) <fedora-38-primary@fedoraproject.org>"
 Fingerprint: 6A51 BBAB BA3D 5467 B617 1221 809A 8D7C EB10 B464
 From       : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-38-primary
Key imported successfully
fedora                                          1.6 MB/s | 1.6 kB     00:00    
GPG key at file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-38-primary (0xEB10B464) is already installed
fedora                                          1.6 MB/s | 1.6 kB     00:00    
Importing GPG key 0x5323552A:
 Userid     : "Fedora (37) <fedora-37-primary@fedoraproject.org>"
 Fingerprint: ACB5 EE4E 831C 74BB 7C16 8D27 F55A D3FB 5323 552A
 From       : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-37-primary
Key imported successfully
Running transaction check
Transaction check succeeded.
Running transaction test
Transaction test succeeded.
Running transaction
  Running scriptlet: filesystem-3.18-2.fc37.x86_64                          1/1 
  Preparing        :                                                        1/1 
  Installing       : libgcc-12.2.1-1.fc38.x86_64                          1/137 
  Running scriptlet: libgcc-12.2.1-1.fc38.x86_64                          1/137 
  Installing       : crypto-policies-20220824-2.git2187e9c.fc38.noarc     2/137 
  Running scriptlet: crypto-policies-20220824-2.git2187e9c.fc38.noarc     2/137 
  Installing       : tzdata-2022c-1.fc38.noarch                           3/137 
  Installing       : fedora-release-identity-basic-38-0.3.noarch          4/137 
  Installing       : publicsuffix-list-dafsa-20210518-5.fc37.noarch       5/137 
  Installing       : pcre2-syntax-10.40-1.fc37.1.noarch                   6/137 
  Installing       : ncurses-base-6.3-3.20220501.fc37.noarch              7/137 
  Installing       : libssh-config-0.9.6-5.fc37.noarch                    8/137 
  Installing       : libreport-filesystem-2.17.2-1.fc38.noarch            9/137 
  Installing       : dnf-data-4.13.0-3.fc37.noarch                       10/137 
warning: /etc/dnf/dnf.conf created as /etc/dnf/dnf.conf.rpmnew

  Installing       : fedora-gpg-keys-38-0.3.noarch                       11/137 
  Installing       : fedora-release-38-0.3.noarch                        12/137 
  Installing       : fedora-release-common-38-0.3.noarch                 13/137 
  Installing       : fedora-repos-rawhide-38-0.3.noarch                  14/137 
  Installing       : fedora-repos-38-0.3.noarch                          15/137 
  Installing       : setup-2.14.1-2.fc37.noarch                          16/137 
warning: /etc/hosts created as /etc/hosts.rpmnew

  Running scriptlet: setup-2.14.1-2.fc37.noarch                          16/137 
  Installing       : filesystem-3.18-2.fc37.x86_64                       17/137 
  Installing       : basesystem-11-14.fc37.noarch                        18/137 
  Installing       : glibc-minimal-langpack-2.36.9000-2.fc38.x86_64      19/137 
  Installing       : glibc-common-2.36.9000-2.fc38.x86_64                20/137 
  Running scriptlet: glibc-2.36.9000-2.fc38.x86_64                       21/137 
  Installing       : glibc-2.36.9000-2.fc38.x86_64                       21/137 
  Running scriptlet: glibc-2.36.9000-2.fc38.x86_64                       21/137 
  Installing       : ncurses-libs-6.3-3.20220501.fc37.x86_64             22/137 
  Installing       : bash-5.1.16-3.fc37.x86_64                           23/137 
  Running scriptlet: bash-5.1.16-3.fc37.x86_64                           23/137 
  Installing       : zlib-1.2.12-5.fc38.x86_64                           24/137 
  Installing       : bzip2-libs-1.0.8-12.fc37.x86_64                     25/137 
  Installing       : xz-libs-5.2.5-10.fc37.x86_64                        26/137 
  Installing       : libzstd-1.5.2-3.fc37.x86_64                         27/137 
  Installing       : sqlite-libs-3.39.2-2.fc37.x86_64                    28/137 
  Installing       : libcap-2.48-5.fc37.x86_64                           29/137 
  Installing       : gmp-1:6.2.1-3.fc37.x86_64                           30/137 
  Installing       : libgpg-error-1.45-2.fc37.x86_64                     31/137 
  Installing       : popt-1.19~rc1-4.fc38.x86_64                         32/137 
  Installing       : libxml2-2.9.14-3.fc37.x86_64                        33/137 
  Installing       : libstdc++-12.2.1-1.fc38.x86_64                      34/137 
  Installing       : lua-libs-5.4.4-4.fc37.x86_64                        35/137 
  Installing       : file-libs-5.42-4.fc38.x86_64                        36/137 
  Installing       : elfutils-libelf-0.187-8.fc38.x86_64                 37/137 
  Installing       : readline-8.1-7.fc37.x86_64                          38/137 
  Installing       : libattr-2.5.1-5.fc37.x86_64                         39/137 
  Installing       : libacl-2.3.1-4.fc37.x86_64                          40/137 
  Installing       : libffi-3.4.2-9.fc37.x86_64                          41/137 
  Installing       : p11-kit-0.24.1-3.fc37.x86_64                        42/137 
  Installing       : libunistring-1.0-2.fc37.x86_64                      43/137 
  Installing       : libidn2-2.3.3-2.fc37.x86_64                         44/137 
  Installing       : libuuid-2.38.1-2.fc38.x86_64                        45/137 
  Installing       : libxcrypt-4.4.28-3.fc38.x86_64                      46/137 
  Installing       : libassuan-2.5.5-5.fc37.x86_64                       47/137 
  Installing       : expat-2.4.8-2.fc37.x86_64                           48/137 
  Installing       : gdbm-libs-1:1.23-2.fc37.x86_64                      49/137 
  Installing       : json-c-0.16-2.fc37.x86_64                           50/137 
  Installing       : keyutils-libs-1.6.1-5.fc37.x86_64                   51/137 
  Installing       : libcom_err-1.46.5-3.fc37.x86_64                     52/137 
  Installing       : libgomp-12.2.1-1.fc38.x86_64                        53/137 
  Installing       : libsepol-3.4-3.fc37.x86_64                          54/137 
  Installing       : libsmartcols-2.38.1-2.fc38.x86_64                   55/137 
  Installing       : libtasn1-4.18.0-3.fc37.x86_64                       56/137 
  Installing       : lz4-libs-1.9.3-5.fc37.x86_64                        57/137 
  Installing       : pcre2-10.40-1.fc37.1.x86_64                         58/137 
  Installing       : libselinux-3.4-5.fc37.x86_64                        59/137 
  Installing       : sed-4.8-11.fc37.x86_64                              60/137 
  Installing       : findutils-1:4.9.0-2.fc37.x86_64                     61/137 
  Installing       : systemd-libs-251.4-53.fc38.x86_64                   62/137 
  Installing       : dbus-libs-1:1.14.0-5.fc38.x86_64                    63/137 
  Installing       : libb2-0.98.1-7.fc37.x86_64                          64/137 
  Installing       : cyrus-sasl-lib-2.1.28-8.fc38.x86_64                 65/137 
  Installing       : libcomps-0.1.18-4.fc37.x86_64                       66/137 
  Installing       : libblkid-2.38.1-2.fc38.x86_64                       67/137 
  Installing       : libmount-2.38.1-2.fc38.x86_64                       68/137 
  Installing       : libpsl-0.21.1-6.fc37.x86_64                         69/137 
  Installing       : mpdecimal-2.5.1-4.fc37.x86_64                       70/137 
  Installing       : libgcrypt-1.10.1-4.fc37.x86_64                      71/137 
  Installing       : libksba-1.6.0-4.fc37.x86_64                         72/137 
  Installing       : mpfr-4.1.0-10.fc37.x86_64                           73/137 
  Installing       : nettle-3.8-2.fc37.x86_64                            74/137 
  Installing       : elfutils-default-yama-scope-0.187-8.fc38.noarch     75/137 
  Running scriptlet: elfutils-default-yama-scope-0.187-8.fc38.noarch     75/137 
  Installing       : elfutils-libs-0.187-8.fc38.x86_64                   76/137 
  Installing       : libbrotli-1.0.9-9.fc38.x86_64                       77/137 
  Installing       : alternatives-1.19-3.fc37.x86_64                     78/137 
  Installing       : p11-kit-trust-0.24.1-3.fc37.x86_64                  79/137 
  Running scriptlet: p11-kit-trust-0.24.1-3.fc37.x86_64                  79/137 
  Installing       : gnutls-3.7.7-1.fc37.x86_64                          80/137 
  Installing       : glib2-2.73.3-2.fc38.x86_64                          81/137 
  Installing       : libcap-ng-0.8.3-3.fc37.x86_64                       82/137 
  Installing       : audit-libs-3.0.9-1.fc38.x86_64                      83/137 
  Installing       : libsemanage-3.4-5.fc37.x86_64                       84/137 
  Installing       : shadow-utils-2:4.12.3-1.fc38.x86_64                 85/137 
  Installing       : libnghttp2-1.49.0-1.fc38.x86_64                     86/137 
  Installing       : libsigsegv-2.14-3.fc37.x86_64                       87/137 
  Installing       : gawk-5.1.1-4.fc37.x86_64                            88/137 
  Installing       : libverto-0.3.2-4.fc37.x86_64                        89/137 
  Installing       : libyaml-0.2.5-8.fc37.x86_64                         90/137 
  Installing       : npth-1.6-9.fc37.x86_64                              91/137 
  Installing       : pcre-8.45-1.fc37.2.x86_64                           92/137 
  Installing       : grep-3.7-4.fc37.x86_64                              93/137 
  Installing       : coreutils-common-9.1-7.fc38.x86_64                  94/137 
  Installing       : openssl-libs-1:3.0.5-2.fc37.x86_64                  95/137 
  Installing       : coreutils-9.1-7.fc38.x86_64                         96/137 
  Running scriptlet: ca-certificates-2022.2.54-5.fc37.noarch             97/137 
  Installing       : ca-certificates-2022.2.54-5.fc37.noarch             97/137 
  Running scriptlet: ca-certificates-2022.2.54-5.fc37.noarch             97/137 
  Installing       : krb5-libs-1.19.2-11.fc37.1.x86_64                   98/137 
  Installing       : libtirpc-1.3.3-0.fc37.x86_64                        99/137 
  Installing       : libfsverity-1.4-8.fc37.x86_64                      100/137 
  Installing       : zchunk-libs-1.2.2-2.fc37.x86_64                    101/137 
  Installing       : libnsl2-2.0.0-4.fc37.x86_64                        102/137 
  Installing       : libssh-0.9.6-5.fc37.x86_64                         103/137 
  Installing       : python-pip-wheel-22.2-1.fc37.noarch                104/137 
  Installing       : libarchive-3.6.1-2.fc37.x86_64                     105/137 
  Installing       : libevent-2.1.12-7.fc37.x86_64                      106/137 
  Installing       : openldap-2.6.3-1.fc38.x86_64                       107/137 
  Installing       : libcurl-7.84.0-3.fc38.x86_64                       108/137 
  Installing       : gnupg2-2.3.7-3.fc37.x86_64                         109/137 
  Installing       : gpgme-1.17.0-4.fc37.x86_64                         110/137 
  Installing       : librepo-1.14.4-1.fc38.x86_64                       111/137 
  Installing       : curl-7.84.0-3.fc38.x86_64                          112/137 
  Installing       : rpm-libs-4.18.0-0.beta1.4.fc37.x86_64              113/137 
  Running scriptlet: rpm-4.18.0-0.beta1.4.fc37.x86_64                   114/137 
  Installing       : rpm-4.18.0-0.beta1.4.fc37.x86_64                   114/137 
  Installing       : libmodulemd-2.14.0-4.fc37.x86_64                   115/137 
  Installing       : libsolv-0.7.22-3.fc37.x86_64                       116/137 
  Installing       : libdnf-0.68.0-1.fc38.x86_64                        117/137 
  Installing       : rpm-build-libs-4.18.0-0.beta1.4.fc37.x86_64        118/137 
  Running scriptlet: tpm2-tss-3.2.0-3.fc37.x86_64                       119/137 
  Installing       : tpm2-tss-3.2.0-3.fc37.x86_64                       119/137 
  Installing       : ima-evm-utils-1.4-6.fc37.x86_64                    120/137 
  Installing       : rpm-sign-libs-4.18.0-0.beta1.4.fc37.x86_64         121/137 
  Installing       : python-setuptools-wheel-65.3.0-1.fc38.noarch       122/137 
  Installing       : python3-3.11.0~rc1-2.fc38.x86_64                   123/137 
  Installing       : python3-libs-3.11.0~rc1-2.fc38.x86_64              124/137 
  Installing       : python3-libdnf-0.68.0-1.fc38.x86_64                125/137 
  Installing       : python3-hawkey-0.68.0-1.fc38.x86_64                126/137 
  Installing       : python3-dbus-1.2.18-5.fc37.x86_64                  127/137 
  Installing       : python3-libcomps-0.1.18-4.fc37.x86_64              128/137 
  Installing       : python3-distro-1.7.0-3.fc37.noarch                 129/137 
  Installing       : python3-gpg-1.17.0-4.fc37.x86_64                   130/137 
  Installing       : python3-rpm-4.18.0-0.beta1.4.fc37.x86_64           131/137 
  Installing       : python3-dnf-4.13.0-3.fc37.noarch                   132/137 
  Installing       : python3-six-1.16.0-8.fc37.noarch                   133/137 
  Installing       : python3-dateutil-1:2.8.2-4.fc37.noarch             134/137 
  Installing       : python3-dnf-plugins-core-4.2.1-3.fc37.noarch       135/137 
  Installing       : dnf-plugins-core-4.2.1-3.fc37.noarch               136/137 
  Installing       : dnf-4.13.0-3.fc37.noarch                           137/137 
  Running scriptlet: dnf-4.13.0-3.fc37.noarch                           137/137 
  Running scriptlet: filesystem-3.18-2.fc37.x86_64                      137/137 
  Running scriptlet: ca-certificates-2022.2.54-5.fc37.noarch            137/137 
  Running scriptlet: rpm-4.18.0-0.beta1.4.fc37.x86_64                   137/137 
  Running scriptlet: dnf-4.13.0-3.fc37.noarch                           137/137 
  Verifying        : file-libs-5.42-4.fc38.x86_64                         1/137 
  Verifying        : libbrotli-1.0.9-9.fc38.x86_64                        2/137 
  Verifying        : python-setuptools-wheel-65.3.0-1.fc38.noarch         3/137 
  Verifying        : alternatives-1.19-3.fc37.x86_64                      4/137 
  Verifying        : audit-libs-3.0.9-1.fc38.x86_64                       5/137 
  Verifying        : basesystem-11-14.fc37.noarch                         6/137 
  Verifying        : bash-5.1.16-3.fc37.x86_64                            7/137 
  Verifying        : bzip2-libs-1.0.8-12.fc37.x86_64                      8/137 
  Verifying        : ca-certificates-2022.2.54-5.fc37.noarch              9/137 
  Verifying        : coreutils-9.1-7.fc38.x86_64                         10/137 
  Verifying        : coreutils-common-9.1-7.fc38.x86_64                  11/137 
  Verifying        : crypto-policies-20220824-2.git2187e9c.fc38.noarc    12/137 
  Verifying        : curl-7.84.0-3.fc38.x86_64                           13/137 
  Verifying        : cyrus-sasl-lib-2.1.28-8.fc38.x86_64                 14/137 
  Verifying        : dbus-libs-1:1.14.0-5.fc38.x86_64                    15/137 
  Verifying        : dnf-4.13.0-3.fc37.noarch                            16/137 
  Verifying        : dnf-data-4.13.0-3.fc37.noarch                       17/137 
  Verifying        : dnf-plugins-core-4.2.1-3.fc37.noarch                18/137 
  Verifying        : elfutils-default-yama-scope-0.187-8.fc38.noarch     19/137 
  Verifying        : elfutils-libelf-0.187-8.fc38.x86_64                 20/137 
  Verifying        : elfutils-libs-0.187-8.fc38.x86_64                   21/137 
  Verifying        : expat-2.4.8-2.fc37.x86_64                           22/137 
  Verifying        : fedora-gpg-keys-38-0.3.noarch                       23/137 
  Verifying        : fedora-release-38-0.3.noarch                        24/137 
  Verifying        : fedora-release-common-38-0.3.noarch                 25/137 
  Verifying        : fedora-release-identity-basic-38-0.3.noarch         26/137 
  Verifying        : fedora-repos-38-0.3.noarch                          27/137 
  Verifying        : fedora-repos-rawhide-38-0.3.noarch                  28/137 
  Verifying        : filesystem-3.18-2.fc37.x86_64                       29/137 
  Verifying        : findutils-1:4.9.0-2.fc37.x86_64                     30/137 
  Verifying        : gawk-5.1.1-4.fc37.x86_64                            31/137 
  Verifying        : gdbm-libs-1:1.23-2.fc37.x86_64                      32/137 
  Verifying        : glib2-2.73.3-2.fc38.x86_64                          33/137 
  Verifying        : glibc-2.36.9000-2.fc38.x86_64                       34/137 
  Verifying        : glibc-common-2.36.9000-2.fc38.x86_64                35/137 
  Verifying        : glibc-minimal-langpack-2.36.9000-2.fc38.x86_64      36/137 
  Verifying        : gmp-1:6.2.1-3.fc37.x86_64                           37/137 
  Verifying        : gnupg2-2.3.7-3.fc37.x86_64                          38/137 
  Verifying        : gnutls-3.7.7-1.fc37.x86_64                          39/137 
  Verifying        : gpgme-1.17.0-4.fc37.x86_64                          40/137 
  Verifying        : grep-3.7-4.fc37.x86_64                              41/137 
  Verifying        : ima-evm-utils-1.4-6.fc37.x86_64                     42/137 
  Verifying        : json-c-0.16-2.fc37.x86_64                           43/137 
  Verifying        : keyutils-libs-1.6.1-5.fc37.x86_64                   44/137 
  Verifying        : krb5-libs-1.19.2-11.fc37.1.x86_64                   45/137 
  Verifying        : libacl-2.3.1-4.fc37.x86_64                          46/137 
  Verifying        : libarchive-3.6.1-2.fc37.x86_64                      47/137 
  Verifying        : libassuan-2.5.5-5.fc37.x86_64                       48/137 
  Verifying        : libattr-2.5.1-5.fc37.x86_64                         49/137 
  Verifying        : libb2-0.98.1-7.fc37.x86_64                          50/137 
  Verifying        : libblkid-2.38.1-2.fc38.x86_64                       51/137 
  Verifying        : libcap-2.48-5.fc37.x86_64                           52/137 
  Verifying        : libcap-ng-0.8.3-3.fc37.x86_64                       53/137 
  Verifying        : libcom_err-1.46.5-3.fc37.x86_64                     54/137 
  Verifying        : libcomps-0.1.18-4.fc37.x86_64                       55/137 
  Verifying        : libcurl-7.84.0-3.fc38.x86_64                        56/137 
  Verifying        : libdnf-0.68.0-1.fc38.x86_64                         57/137 
  Verifying        : libevent-2.1.12-7.fc37.x86_64                       58/137 
  Verifying        : libffi-3.4.2-9.fc37.x86_64                          59/137 
  Verifying        : libfsverity-1.4-8.fc37.x86_64                       60/137 
  Verifying        : libgcc-12.2.1-1.fc38.x86_64                         61/137 
  Verifying        : libgcrypt-1.10.1-4.fc37.x86_64                      62/137 
  Verifying        : libgomp-12.2.1-1.fc38.x86_64                        63/137 
  Verifying        : libgpg-error-1.45-2.fc37.x86_64                     64/137 
  Verifying        : libidn2-2.3.3-2.fc37.x86_64                         65/137 
  Verifying        : libksba-1.6.0-4.fc37.x86_64                         66/137 
  Verifying        : libmodulemd-2.14.0-4.fc37.x86_64                    67/137 
  Verifying        : libmount-2.38.1-2.fc38.x86_64                       68/137 
  Verifying        : libnghttp2-1.49.0-1.fc38.x86_64                     69/137 
  Verifying        : libnsl2-2.0.0-4.fc37.x86_64                         70/137 
  Verifying        : libpsl-0.21.1-6.fc37.x86_64                         71/137 
  Verifying        : librepo-1.14.4-1.fc38.x86_64                        72/137 
  Verifying        : libreport-filesystem-2.17.2-1.fc38.noarch           73/137 
  Verifying        : libselinux-3.4-5.fc37.x86_64                        74/137 
  Verifying        : libsemanage-3.4-5.fc37.x86_64                       75/137 
  Verifying        : libsepol-3.4-3.fc37.x86_64                          76/137 
  Verifying        : libsigsegv-2.14-3.fc37.x86_64                       77/137 
  Verifying        : libsmartcols-2.38.1-2.fc38.x86_64                   78/137 
  Verifying        : libsolv-0.7.22-3.fc37.x86_64                        79/137 
  Verifying        : libssh-0.9.6-5.fc37.x86_64                          80/137 
  Verifying        : libssh-config-0.9.6-5.fc37.noarch                   81/137 
  Verifying        : libstdc++-12.2.1-1.fc38.x86_64                      82/137 
  Verifying        : libtasn1-4.18.0-3.fc37.x86_64                       83/137 
  Verifying        : libtirpc-1.3.3-0.fc37.x86_64                        84/137 
  Verifying        : libunistring-1.0-2.fc37.x86_64                      85/137 
  Verifying        : libuuid-2.38.1-2.fc38.x86_64                        86/137 
  Verifying        : libverto-0.3.2-4.fc37.x86_64                        87/137 
  Verifying        : libxcrypt-4.4.28-3.fc38.x86_64                      88/137 
  Verifying        : libxml2-2.9.14-3.fc37.x86_64                        89/137 
  Verifying        : libyaml-0.2.5-8.fc37.x86_64                         90/137 
  Verifying        : libzstd-1.5.2-3.fc37.x86_64                         91/137 
  Verifying        : lua-libs-5.4.4-4.fc37.x86_64                        92/137 
  Verifying        : lz4-libs-1.9.3-5.fc37.x86_64                        93/137 
  Verifying        : mpdecimal-2.5.1-4.fc37.x86_64                       94/137 
  Verifying        : mpfr-4.1.0-10.fc37.x86_64                           95/137 
  Verifying        : ncurses-base-6.3-3.20220501.fc37.noarch             96/137 
  Verifying        : ncurses-libs-6.3-3.20220501.fc37.x86_64             97/137 
  Verifying        : nettle-3.8-2.fc37.x86_64                            98/137 
  Verifying        : npth-1.6-9.fc37.x86_64                              99/137 
  Verifying        : openldap-2.6.3-1.fc38.x86_64                       100/137 
  Verifying        : openssl-libs-1:3.0.5-2.fc37.x86_64                 101/137 
  Verifying        : p11-kit-0.24.1-3.fc37.x86_64                       102/137 
  Verifying        : p11-kit-trust-0.24.1-3.fc37.x86_64                 103/137 
  Verifying        : pcre-8.45-1.fc37.2.x86_64                          104/137 
  Verifying        : pcre2-10.40-1.fc37.1.x86_64                        105/137 
  Verifying        : pcre2-syntax-10.40-1.fc37.1.noarch                 106/137 
  Verifying        : popt-1.19~rc1-4.fc38.x86_64                        107/137 
  Verifying        : publicsuffix-list-dafsa-20210518-5.fc37.noarch     108/137 
  Verifying        : python-pip-wheel-22.2-1.fc37.noarch                109/137 
  Verifying        : python3-3.11.0~rc1-2.fc38.x86_64                   110/137 
  Verifying        : python3-dateutil-1:2.8.2-4.fc37.noarch             111/137 
  Verifying        : python3-dbus-1.2.18-5.fc37.x86_64                  112/137 
  Verifying        : python3-distro-1.7.0-3.fc37.noarch                 113/137 
  Verifying        : python3-dnf-4.13.0-3.fc37.noarch                   114/137 
  Verifying        : python3-dnf-plugins-core-4.2.1-3.fc37.noarch       115/137 
  Verifying        : python3-gpg-1.17.0-4.fc37.x86_64                   116/137 
  Verifying        : python3-hawkey-0.68.0-1.fc38.x86_64                117/137 
  Verifying        : python3-libcomps-0.1.18-4.fc37.x86_64              118/137 
  Verifying        : python3-libdnf-0.68.0-1.fc38.x86_64                119/137 
  Verifying        : python3-libs-3.11.0~rc1-2.fc38.x86_64              120/137 
  Verifying        : python3-rpm-4.18.0-0.beta1.4.fc37.x86_64           121/137 
  Verifying        : python3-six-1.16.0-8.fc37.noarch                   122/137 
  Verifying        : readline-8.1-7.fc37.x86_64                         123/137 
  Verifying        : rpm-4.18.0-0.beta1.4.fc37.x86_64                   124/137 
  Verifying        : rpm-build-libs-4.18.0-0.beta1.4.fc37.x86_64        125/137 
  Verifying        : rpm-libs-4.18.0-0.beta1.4.fc37.x86_64              126/137 
  Verifying        : rpm-sign-libs-4.18.0-0.beta1.4.fc37.x86_64         127/137 
  Verifying        : sed-4.8-11.fc37.x86_64                             128/137 
  Verifying        : setup-2.14.1-2.fc37.noarch                         129/137 
  Verifying        : shadow-utils-2:4.12.3-1.fc38.x86_64                130/137 
  Verifying        : sqlite-libs-3.39.2-2.fc37.x86_64                   131/137 
  Verifying        : systemd-libs-251.4-53.fc38.x86_64                  132/137 
  Verifying        : tpm2-tss-3.2.0-3.fc37.x86_64                       133/137 
  Verifying        : tzdata-2022c-1.fc38.noarch                         134/137 
  Verifying        : xz-libs-5.2.5-10.fc37.x86_64                       135/137 
  Verifying        : zchunk-libs-1.2.2-2.fc37.x86_64                    136/137 
  Verifying        : zlib-1.2.12-5.fc38.x86_64                          137/137 
Installed products updated.

Installed:
  alternatives-1.19-3.fc37.x86_64                                               
  audit-libs-3.0.9-1.fc38.x86_64                                                
  basesystem-11-14.fc37.noarch                                                  
  bash-5.1.16-3.fc37.x86_64                                                     
  bzip2-libs-1.0.8-12.fc37.x86_64                                               
  ca-certificates-2022.2.54-5.fc37.noarch                                       
  coreutils-9.1-7.fc38.x86_64                                                   
  coreutils-common-9.1-7.fc38.x86_64                                            
  crypto-policies-20220824-2.git2187e9c.fc38.noarch                             
  curl-7.84.0-3.fc38.x86_64                                                     
  cyrus-sasl-lib-2.1.28-8.fc38.x86_64                                           
  dbus-libs-1:1.14.0-5.fc38.x86_64                                              
  dnf-4.13.0-3.fc37.noarch                                                      
  dnf-data-4.13.0-3.fc37.noarch                                                 
  dnf-plugins-core-4.2.1-3.fc37.noarch                                          
  elfutils-default-yama-scope-0.187-8.fc38.noarch                               
  elfutils-libelf-0.187-8.fc38.x86_64                                           
  elfutils-libs-0.187-8.fc38.x86_64                                             
  expat-2.4.8-2.fc37.x86_64                                                     
  fedora-gpg-keys-38-0.3.noarch                                                 
  fedora-release-38-0.3.noarch                                                  
  fedora-release-common-38-0.3.noarch                                           
  fedora-release-identity-basic-38-0.3.noarch                                   
  fedora-repos-38-0.3.noarch                                                    
  fedora-repos-rawhide-38-0.3.noarch                                            
  file-libs-5.42-4.fc38.x86_64                                                  
  filesystem-3.18-2.fc37.x86_64                                                 
  findutils-1:4.9.0-2.fc37.x86_64                                               
  gawk-5.1.1-4.fc37.x86_64                                                      
  gdbm-libs-1:1.23-2.fc37.x86_64                                                
  glib2-2.73.3-2.fc38.x86_64                                                    
  glibc-2.36.9000-2.fc38.x86_64                                                 
  glibc-common-2.36.9000-2.fc38.x86_64                                          
  glibc-minimal-langpack-2.36.9000-2.fc38.x86_64                                
  gmp-1:6.2.1-3.fc37.x86_64                                                     
  gnupg2-2.3.7-3.fc37.x86_64                                                    
  gnutls-3.7.7-1.fc37.x86_64                                                    
  gpgme-1.17.0-4.fc37.x86_64                                                    
  grep-3.7-4.fc37.x86_64                                                        
  ima-evm-utils-1.4-6.fc37.x86_64                                               
  json-c-0.16-2.fc37.x86_64                                                     
  keyutils-libs-1.6.1-5.fc37.x86_64                                             
  krb5-libs-1.19.2-11.fc37.1.x86_64                                             
  libacl-2.3.1-4.fc37.x86_64                                                    
  libarchive-3.6.1-2.fc37.x86_64                                                
  libassuan-2.5.5-5.fc37.x86_64                                                 
  libattr-2.5.1-5.fc37.x86_64                                                   
  libb2-0.98.1-7.fc37.x86_64                                                    
  libblkid-2.38.1-2.fc38.x86_64                                                 
  libbrotli-1.0.9-9.fc38.x86_64                                                 
  libcap-2.48-5.fc37.x86_64                                                     
  libcap-ng-0.8.3-3.fc37.x86_64                                                 
  libcom_err-1.46.5-3.fc37.x86_64                                               
  libcomps-0.1.18-4.fc37.x86_64                                                 
  libcurl-7.84.0-3.fc38.x86_64                                                  
  libdnf-0.68.0-1.fc38.x86_64                                                   
  libevent-2.1.12-7.fc37.x86_64                                                 
  libffi-3.4.2-9.fc37.x86_64                                                    
  libfsverity-1.4-8.fc37.x86_64                                                 
  libgcc-12.2.1-1.fc38.x86_64                                                   
  libgcrypt-1.10.1-4.fc37.x86_64                                                
  libgomp-12.2.1-1.fc38.x86_64                                                  
  libgpg-error-1.45-2.fc37.x86_64                                               
  libidn2-2.3.3-2.fc37.x86_64                                                   
  libksba-1.6.0-4.fc37.x86_64                                                   
  libmodulemd-2.14.0-4.fc37.x86_64                                              
  libmount-2.38.1-2.fc38.x86_64                                                 
  libnghttp2-1.49.0-1.fc38.x86_64                                               
  libnsl2-2.0.0-4.fc37.x86_64                                                   
  libpsl-0.21.1-6.fc37.x86_64                                                   
  librepo-1.14.4-1.fc38.x86_64                                                  
  libreport-filesystem-2.17.2-1.fc38.noarch                                     
  libselinux-3.4-5.fc37.x86_64                                                  
  libsemanage-3.4-5.fc37.x86_64                                                 
  libsepol-3.4-3.fc37.x86_64                                                    
  libsigsegv-2.14-3.fc37.x86_64                                                 
  libsmartcols-2.38.1-2.fc38.x86_64                                             
  libsolv-0.7.22-3.fc37.x86_64                                                  
  libssh-0.9.6-5.fc37.x86_64                                                    
  libssh-config-0.9.6-5.fc37.noarch                                             
  libstdc++-12.2.1-1.fc38.x86_64                                                
  libtasn1-4.18.0-3.fc37.x86_64                                                 
  libtirpc-1.3.3-0.fc37.x86_64                                                  
  libunistring-1.0-2.fc37.x86_64                                                
  libuuid-2.38.1-2.fc38.x86_64                                                  
  libverto-0.3.2-4.fc37.x86_64                                                  
  libxcrypt-4.4.28-3.fc38.x86_64                                                
  libxml2-2.9.14-3.fc37.x86_64                                                  
  libyaml-0.2.5-8.fc37.x86_64                                                   
  libzstd-1.5.2-3.fc37.x86_64                                                   
  lua-libs-5.4.4-4.fc37.x86_64                                                  
  lz4-libs-1.9.3-5.fc37.x86_64                                                  
  mpdecimal-2.5.1-4.fc37.x86_64                                                 
  mpfr-4.1.0-10.fc37.x86_64                                                     
  ncurses-base-6.3-3.20220501.fc37.noarch                                       
  ncurses-libs-6.3-3.20220501.fc37.x86_64                                       
  nettle-3.8-2.fc37.x86_64                                                      
  npth-1.6-9.fc37.x86_64                                                        
  openldap-2.6.3-1.fc38.x86_64                                                  
  openssl-libs-1:3.0.5-2.fc37.x86_64                                            
  p11-kit-0.24.1-3.fc37.x86_64                                                  
  p11-kit-trust-0.24.1-3.fc37.x86_64                                            
  pcre-8.45-1.fc37.2.x86_64                                                     
  pcre2-10.40-1.fc37.1.x86_64                                                   
  pcre2-syntax-10.40-1.fc37.1.noarch                                            
  popt-1.19~rc1-4.fc38.x86_64                                                   
  publicsuffix-list-dafsa-20210518-5.fc37.noarch                                
  python-pip-wheel-22.2-1.fc37.noarch                                           
  python-setuptools-wheel-65.3.0-1.fc38.noarch                                  
  python3-3.11.0~rc1-2.fc38.x86_64                                              
  python3-dateutil-1:2.8.2-4.fc37.noarch                                        
  python3-dbus-1.2.18-5.fc37.x86_64                                             
  python3-distro-1.7.0-3.fc37.noarch                                            
  python3-dnf-4.13.0-3.fc37.noarch                                              
  python3-dnf-plugins-core-4.2.1-3.fc37.noarch                                  
  python3-gpg-1.17.0-4.fc37.x86_64                                              
  python3-hawkey-0.68.0-1.fc38.x86_64                                           
  python3-libcomps-0.1.18-4.fc37.x86_64                                         
  python3-libdnf-0.68.0-1.fc38.x86_64                                           
  python3-libs-3.11.0~rc1-2.fc38.x86_64                                         
  python3-rpm-4.18.0-0.beta1.4.fc37.x86_64                                      
  python3-six-1.16.0-8.fc37.noarch                                              
  readline-8.1-7.fc37.x86_64                                                    
  rpm-4.18.0-0.beta1.4.fc37.x86_64                                              
  rpm-build-libs-4.18.0-0.beta1.4.fc37.x86_64                                   
  rpm-libs-4.18.0-0.beta1.4.fc37.x86_64                                         
  rpm-sign-libs-4.18.0-0.beta1.4.fc37.x86_64                                    
  sed-4.8-11.fc37.x86_64                                                        
  setup-2.14.1-2.fc37.noarch                                                    
  shadow-utils-2:4.12.3-1.fc38.x86_64                                           
  sqlite-libs-3.39.2-2.fc37.x86_64                                              
  systemd-libs-251.4-53.fc38.x86_64                                             
  tpm2-tss-3.2.0-3.fc37.x86_64                                                  
  tzdata-2022c-1.fc38.noarch                                                    
  xz-libs-5.2.5-10.fc37.x86_64                                                  
  zchunk-libs-1.2.2-2.fc37.x86_64                                               
  zlib-1.2.12-5.fc38.x86_64                                                     

Complete!
Finish(bootstrap): dnf install
Start(bootstrap): creating root cache
Finish(bootstrap): creating root cache
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1662040121.852928/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
Mock Version: 3.1
INFO: Mock Version: 3.1
Start: dnf install
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Copr repository                                  23 kB/s | 3.0 kB     00:00    
Copr repository                                 4.5 MB/s | 1.8 MB     00:00    
fedora                                          371 kB/s |  16 kB     00:00    
Dependencies resolved.
================================================================================
 Package                      Arch   Version                    Repo       Size
================================================================================
Installing group/module packages:
 bash                         x86_64 5.1.16-3.fc37              fedora    1.7 M
 bzip2                        x86_64 1.0.8-12.fc37              fedora     52 k
 coreutils                    x86_64 9.1-7.fc38                 fedora    1.1 M
 cpio                         x86_64 2.13-13.fc37               fedora    277 k
 diffutils                    x86_64 3.8-3.fc37                 fedora    378 k
 fedora-release-common        noarch 38-0.3                     fedora     22 k
 findutils                    x86_64 1:4.9.0-2.fc37             fedora    492 k
 gawk                         x86_64 5.1.1-4.fc37               fedora    1.0 M
 glibc-minimal-langpack       x86_64 2.36.9000-4.fc38           fedora     13 k
 grep                         x86_64 3.7-4.fc37                 fedora    273 k
 gzip                         x86_64 1.12-2.fc37                fedora    166 k
 info                         x86_64 6.8-4.fc37                 fedora    225 k
 patch                        x86_64 2.7.6-17.fc37              fedora    124 k
 redhat-rpm-config            noarch 230-1.fc38                 fedora     81 k
 rpm-build                    x86_64 4.18.0-0.beta1.4.fc37      fedora     76 k
 sed                          x86_64 4.8-11.fc37                fedora    306 k
 shadow-utils                 x86_64 2:4.12.3-1.fc38            fedora    1.3 M
 tar                          x86_64 2:1.34-3.fc36              fedora    886 k
 unzip                        x86_64 6.0-58.fc37                fedora    182 k
 util-linux                   x86_64 2.38.1-2.fc38              fedora    2.3 M
 which                        x86_64 2.21-35.fc37               fedora     41 k
 xz                           x86_64 5.2.6-1.fc38               fedora    299 k
Installing dependencies:
 alternatives                 x86_64 1.19-3.fc37                fedora     36 k
 ansible-srpm-macros          noarch 1-7.fc38                   fedora    7.7 k
 audit-libs                   x86_64 3.0.9-1.fc38               fedora    116 k
 authselect                   x86_64 1.4.0-3.fc37               fedora    144 k
 authselect-libs              x86_64 1.4.0-3.fc37               fedora    248 k
 basesystem                   noarch 11-14.fc37                 fedora    7.0 k
 binutils                     x86_64 2.39-2.fc38                fedora    5.4 M
 binutils-gold                x86_64 2.39-2.fc38                fedora    778 k
 bzip2-libs                   x86_64 1.0.8-12.fc37              fedora     41 k
 ca-certificates              noarch 2022.2.54-5.fc37           fedora    829 k
 coreutils-common             x86_64 9.1-7.fc38                 fedora    2.0 M
 cracklib                     x86_64 2.9.7-30.fc38              fedora     92 k
 crypto-policies              noarch 20220824-2.git2187e9c.fc38 fedora     86 k
 curl                         x86_64 7.84.0-3.fc38              fedora    312 k
 cyrus-sasl-lib               x86_64 2.1.28-8.fc38              fedora    792 k
 debugedit                    x86_64 5.0-5.fc37                 fedora     77 k
 dwz                          x86_64 0.14-7.fc37                fedora    129 k
 ed                           x86_64 1.18-2.fc37                fedora     78 k
 efi-srpm-macros              noarch 5-6.fc37                   fedora     22 k
 elfutils                     x86_64 0.187-8.fc38               fedora    529 k
 elfutils-debuginfod-client   x86_64 0.187-8.fc38               fedora     39 k
 elfutils-default-yama-scope  noarch 0.187-8.fc38               fedora     16 k
 elfutils-libelf              x86_64 0.187-8.fc38               fedora    197 k
 elfutils-libs                x86_64 0.187-8.fc38               fedora    257 k
 fedora-gpg-keys              noarch 38-0.3                     fedora    125 k
 fedora-release               noarch 38-0.3                     fedora     11 k
 fedora-release-identity-basic
                              noarch 38-0.3                     fedora     12 k
 fedora-repos                 noarch 38-0.3                     fedora     10 k
 fedora-repos-rawhide         noarch 38-0.3                     fedora    9.7 k
 file                         x86_64 5.42-4.fc38                copr_base  49 k
 file-libs                    x86_64 5.42-4.fc38                copr_base 676 k
 filesystem                   x86_64 3.18-2.fc37                fedora    1.1 M
 fonts-srpm-macros            noarch 1:2.0.5-9.fc38             fedora     26 k
 fpc-srpm-macros              noarch 1.3-6.fc37                 fedora    7.7 k
 gdb-minimal                  x86_64 12.1-4.fc37                fedora    3.9 M
 gdbm-libs                    x86_64 1:1.23-2.fc37              fedora     56 k
 ghc-srpm-macros              noarch 1.5.0-7.fc37               fedora    7.8 k
 glibc                        x86_64 2.36.9000-4.fc38           fedora    2.1 M
 glibc-common                 x86_64 2.36.9000-4.fc38           fedora    291 k
 glibc-gconv-extra            x86_64 2.36.9000-4.fc38           fedora    1.6 M
 gmp                          x86_64 1:6.2.1-3.fc37             fedora    315 k
 gnat-srpm-macros             noarch 4-16.fc37                  fedora    8.3 k
 go-srpm-macros               noarch 3.1.0-4.fc37               fedora     27 k
 jansson                      x86_64 2.13.1-5.fc37              fedora     44 k
 kernel-srpm-macros           noarch 1.0-15.fc37                fedora    9.4 k
 keyutils-libs                x86_64 1.6.1-5.fc37               fedora     31 k
 krb5-libs                    x86_64 1.19.2-11.fc37.1           fedora    727 k
 libacl                       x86_64 2.3.1-4.fc37               fedora     23 k
 libarchive                   x86_64 3.6.1-2.fc37               fedora    397 k
 libattr                      x86_64 2.5.1-5.fc37               fedora     18 k
 libblkid                     x86_64 2.38.1-2.fc38              fedora    107 k
 libbrotli                    x86_64 1.0.9-9.fc38               copr_base 316 k
 libcap                       x86_64 2.48-5.fc37                fedora     67 k
 libcap-ng                    x86_64 0.8.3-3.fc37               fedora     33 k
 libcom_err                   x86_64 1.46.5-3.fc37              fedora     25 k
 libcurl                      x86_64 7.84.0-3.fc38              fedora    306 k
 libdb                        x86_64 5.3.28-53.fc37             fedora    760 k
 libeconf                     x86_64 0.4.0-4.fc37               fedora     27 k
 libevent                     x86_64 2.1.12-7.fc37              fedora    261 k
 libfdisk                     x86_64 2.38.1-2.fc38              fedora    160 k
 libffi                       x86_64 3.4.2-9.fc37               fedora     37 k
 libgcc                       x86_64 12.2.1-1.fc38              fedora    106 k
 libgomp                      x86_64 12.2.1-1.fc38              fedora    293 k
 libidn2                      x86_64 2.3.3-2.fc37               fedora    113 k
 libmount                     x86_64 2.38.1-2.fc38              fedora    135 k
 libnghttp2                   x86_64 1.49.0-1.fc38              fedora     74 k
 libnsl2                      x86_64 2.0.0-4.fc37               fedora     30 k
 libpkgconf                   x86_64 1.8.0-3.fc37               fedora     36 k
 libpsl                       x86_64 0.21.1-6.fc37              fedora     63 k
 libpwquality                 x86_64 1.4.4-11.fc37              fedora    116 k
 libselinux                   x86_64 3.4-5.fc37                 fedora     86 k
 libsemanage                  x86_64 3.4-5.fc37                 fedora    120 k
 libsepol                     x86_64 3.4-3.fc37                 fedora    322 k
 libsigsegv                   x86_64 2.14-3.fc37                fedora     27 k
 libsmartcols                 x86_64 2.38.1-2.fc38              fedora     64 k
 libssh                       x86_64 0.9.6-5.fc37               fedora    203 k
 libssh-config                noarch 0.9.6-5.fc37               fedora    7.8 k
 libstdc++                    x86_64 12.2.1-1.fc38              fedora    799 k
 libtasn1                     x86_64 4.18.0-3.fc37              fedora     75 k
 libtirpc                     x86_64 1.3.3-0.fc37               fedora     93 k
 libunistring                 x86_64 1.0-2.fc37                 fedora    549 k
 libutempter                  x86_64 1.2.1-7.fc37               fedora     26 k
 libuuid                      x86_64 2.38.1-2.fc38              fedora     28 k
 libverto                     x86_64 0.3.2-4.fc37               fedora     21 k
 libxcrypt                    x86_64 4.4.28-3.fc38              fedora    117 k
 libxml2                      x86_64 2.9.14-3.fc37              fedora    752 k
 libzstd                      x86_64 1.5.2-3.fc37               fedora    294 k
 lua-libs                     x86_64 5.4.4-4.fc37               fedora    217 k
 lua-srpm-macros              noarch 1-7.fc37                   fedora    8.8 k
 lz4-libs                     x86_64 1.9.3-5.fc37               fedora     70 k
 mpfr                         x86_64 4.1.0-10.fc37              fedora    331 k
 ncurses-base                 noarch 6.3-3.20220501.fc37        fedora     86 k
 ncurses-libs                 x86_64 6.3-3.20220501.fc37        fedora    329 k
 nim-srpm-macros              noarch 3-7.fc37                   fedora    8.4 k
 ocaml-srpm-macros            noarch 7-2.fc37                   fedora     13 k
 openblas-srpm-macros         noarch 2-12.fc37                  fedora    7.5 k
 openldap                     x86_64 2.6.3-1.fc38               fedora    254 k
 openssl-libs                 x86_64 1:3.0.5-2.fc37             fedora    2.1 M
 p11-kit                      x86_64 0.24.1-3.fc37              fedora    376 k
 p11-kit-trust                x86_64 0.24.1-3.fc37              fedora    138 k
 package-notes-srpm-macros    noarch 0.5-4.fc38                 fedora     10 k
 pam                          x86_64 1.5.2-14.fc37              fedora    560 k
 pam-libs                     x86_64 1.5.2-14.fc37              fedora     58 k
 pcre                         x86_64 8.45-1.fc37.2              fedora    202 k
 pcre2                        x86_64 10.40-1.fc37.1             fedora    236 k
 pcre2-syntax                 noarch 10.40-1.fc37.1             fedora    142 k
 perl-srpm-macros             noarch 1-46.fc37                  fedora    8.3 k
 pkgconf                      x86_64 1.8.0-3.fc37               fedora     41 k
 pkgconf-m4                   noarch 1.8.0-3.fc37               fedora     14 k
 pkgconf-pkg-config           x86_64 1.8.0-3.fc37               fedora     10 k
 popt                         x86_64 1.19~rc1-4.fc38            fedora     65 k
 publicsuffix-list-dafsa      noarch 20210518-5.fc37            fedora     58 k
 python-srpm-macros           noarch 3.11-4.fc37                fedora     25 k
 qt5-srpm-macros              noarch 5.15.5-2.fc37              fedora    8.1 k
 readline                     x86_64 8.1-7.fc37                 fedora    211 k
 rpm                          x86_64 4.18.0-0.beta1.4.fc37      fedora    570 k
 rpm-build-libs               x86_64 4.18.0-0.beta1.4.fc37      fedora     93 k
 rpm-libs                     x86_64 4.18.0-0.beta1.4.fc37      fedora    319 k
 rpmautospec-rpm-macros       noarch 0.3.0-1.fc37               fedora    8.8 k
 rust-srpm-macros             noarch 22-1.fc37                  fedora    9.5 k
 setup                        noarch 2.14.1-2.fc37              fedora    149 k
 sqlite-libs                  x86_64 3.39.2-2.fc37              fedora    657 k
 systemd-libs                 x86_64 251.4-53.fc38              fedora    620 k
 tzdata                       noarch 2022c-1.fc38               fedora    717 k
 util-linux-core              x86_64 2.38.1-2.fc38              fedora    470 k
 xxhash-libs                  x86_64 0.8.1-3.fc37               fedora     41 k
 xz-libs                      x86_64 5.2.6-1.fc38               fedora     92 k
 zip                          x86_64 3.0-33.fc37                fedora    259 k
 zlib                         x86_64 1.2.12-5.fc38              fedora     94 k
 zstd                         x86_64 1.5.2-3.fc37               fedora    447 k
Installing Groups:
 Buildsystem building group                                                    

Transaction Summary
================================================================================
Install  152 Packages

Total size: 51 M
Installed size: 177 M
Downloading Packages:
[SKIPPED] file-5.42-4.fc38.x86_64.rpm: Already downloaded                      
[SKIPPED] file-libs-5.42-4.fc38.x86_64.rpm: Already downloaded                 
[SKIPPED] libbrotli-1.0.9-9.fc38.x86_64.rpm: Already downloaded                
[SKIPPED] alternatives-1.19-3.fc37.x86_64.rpm: Already downloaded              
[SKIPPED] ansible-srpm-macros-1-7.fc38.noarch.rpm: Already downloaded          
[SKIPPED] audit-libs-3.0.9-1.fc38.x86_64.rpm: Already downloaded               
[SKIPPED] authselect-1.4.0-3.fc37.x86_64.rpm: Already downloaded               
[SKIPPED] authselect-libs-1.4.0-3.fc37.x86_64.rpm: Already downloaded          
[SKIPPED] basesystem-11-14.fc37.noarch.rpm: Already downloaded                 
[SKIPPED] bash-5.1.16-3.fc37.x86_64.rpm: Already downloaded                    
[SKIPPED] binutils-2.39-2.fc38.x86_64.rpm: Already downloaded                  
[SKIPPED] binutils-gold-2.39-2.fc38.x86_64.rpm: Already downloaded             
[SKIPPED] bzip2-1.0.8-12.fc37.x86_64.rpm: Already downloaded                   
[SKIPPED] bzip2-libs-1.0.8-12.fc37.x86_64.rpm: Already downloaded              
[SKIPPED] ca-certificates-2022.2.54-5.fc37.noarch.rpm: Already downloaded      
[SKIPPED] coreutils-9.1-7.fc38.x86_64.rpm: Already downloaded                  
[SKIPPED] coreutils-common-9.1-7.fc38.x86_64.rpm: Already downloaded           
[SKIPPED] cpio-2.13-13.fc37.x86_64.rpm: Already downloaded                     
[SKIPPED] cracklib-2.9.7-30.fc38.x86_64.rpm: Already downloaded                
[SKIPPED] crypto-policies-20220824-2.git2187e9c.fc38.noarch.rpm: Already downloaded
[SKIPPED] curl-7.84.0-3.fc38.x86_64.rpm: Already downloaded                    
[SKIPPED] cyrus-sasl-lib-2.1.28-8.fc38.x86_64.rpm: Already downloaded          
[SKIPPED] debugedit-5.0-5.fc37.x86_64.rpm: Already downloaded                  
[SKIPPED] diffutils-3.8-3.fc37.x86_64.rpm: Already downloaded                  
[SKIPPED] dwz-0.14-7.fc37.x86_64.rpm: Already downloaded                       
[SKIPPED] ed-1.18-2.fc37.x86_64.rpm: Already downloaded                        
[SKIPPED] efi-srpm-macros-5-6.fc37.noarch.rpm: Already downloaded              
[SKIPPED] elfutils-0.187-8.fc38.x86_64.rpm: Already downloaded                 
[SKIPPED] elfutils-debuginfod-client-0.187-8.fc38.x86_64.rpm: Already downloaded
[SKIPPED] elfutils-default-yama-scope-0.187-8.fc38.noarch.rpm: Already downloaded
[SKIPPED] elfutils-libelf-0.187-8.fc38.x86_64.rpm: Already downloaded          
[SKIPPED] elfutils-libs-0.187-8.fc38.x86_64.rpm: Already downloaded            
[SKIPPED] fedora-gpg-keys-38-0.3.noarch.rpm: Already downloaded                
[SKIPPED] fedora-release-38-0.3.noarch.rpm: Already downloaded                 
[SKIPPED] fedora-release-common-38-0.3.noarch.rpm: Already downloaded          
[SKIPPED] fedora-release-identity-basic-38-0.3.noarch.rpm: Already downloaded  
[SKIPPED] fedora-repos-38-0.3.noarch.rpm: Already downloaded                   
[SKIPPED] fedora-repos-rawhide-38-0.3.noarch.rpm: Already downloaded           
[SKIPPED] filesystem-3.18-2.fc37.x86_64.rpm: Already downloaded                
[SKIPPED] findutils-4.9.0-2.fc37.x86_64.rpm: Already downloaded                
[SKIPPED] fonts-srpm-macros-2.0.5-9.fc38.noarch.rpm: Already downloaded        
[SKIPPED] fpc-srpm-macros-1.3-6.fc37.noarch.rpm: Already downloaded            
[SKIPPED] gawk-5.1.1-4.fc37.x86_64.rpm: Already downloaded                     
[SKIPPED] gdb-minimal-12.1-4.fc37.x86_64.rpm: Already downloaded               
[SKIPPED] gdbm-libs-1.23-2.fc37.x86_64.rpm: Already downloaded                 
[SKIPPED] ghc-srpm-macros-1.5.0-7.fc37.noarch.rpm: Already downloaded          
[SKIPPED] glibc-2.36.9000-4.fc38.x86_64.rpm: Already downloaded                
[SKIPPED] glibc-common-2.36.9000-4.fc38.x86_64.rpm: Already downloaded         
[SKIPPED] glibc-gconv-extra-2.36.9000-4.fc38.x86_64.rpm: Already downloaded    
[SKIPPED] glibc-minimal-langpack-2.36.9000-4.fc38.x86_64.rpm: Already downloaded
[SKIPPED] gmp-6.2.1-3.fc37.x86_64.rpm: Already downloaded                      
[SKIPPED] gnat-srpm-macros-4-16.fc37.noarch.rpm: Already downloaded            
[SKIPPED] go-srpm-macros-3.1.0-4.fc37.noarch.rpm: Already downloaded           
[SKIPPED] grep-3.7-4.fc37.x86_64.rpm: Already downloaded                       
[SKIPPED] gzip-1.12-2.fc37.x86_64.rpm: Already downloaded                      
[SKIPPED] info-6.8-4.fc37.x86_64.rpm: Already downloaded                       
[SKIPPED] jansson-2.13.1-5.fc37.x86_64.rpm: Already downloaded                 
[SKIPPED] kernel-srpm-macros-1.0-15.fc37.noarch.rpm: Already downloaded        
[SKIPPED] keyutils-libs-1.6.1-5.fc37.x86_64.rpm: Already downloaded            
[SKIPPED] krb5-libs-1.19.2-11.fc37.1.x86_64.rpm: Already downloaded            
[SKIPPED] libacl-2.3.1-4.fc37.x86_64.rpm: Already downloaded                   
[SKIPPED] libarchive-3.6.1-2.fc37.x86_64.rpm: Already downloaded               
[SKIPPED] libattr-2.5.1-5.fc37.x86_64.rpm: Already downloaded                  
[SKIPPED] libblkid-2.38.1-2.fc38.x86_64.rpm: Already downloaded                
[SKIPPED] libcap-2.48-5.fc37.x86_64.rpm: Already downloaded                    
[SKIPPED] libcap-ng-0.8.3-3.fc37.x86_64.rpm: Already downloaded                
[SKIPPED] libcom_err-1.46.5-3.fc37.x86_64.rpm: Already downloaded              
[SKIPPED] libcurl-7.84.0-3.fc38.x86_64.rpm: Already downloaded                 
[SKIPPED] libdb-5.3.28-53.fc37.x86_64.rpm: Already downloaded                  
[SKIPPED] libeconf-0.4.0-4.fc37.x86_64.rpm: Already downloaded                 
[SKIPPED] libevent-2.1.12-7.fc37.x86_64.rpm: Already downloaded                
[SKIPPED] libfdisk-2.38.1-2.fc38.x86_64.rpm: Already downloaded                
[SKIPPED] libffi-3.4.2-9.fc37.x86_64.rpm: Already downloaded                   
[SKIPPED] libgcc-12.2.1-1.fc38.x86_64.rpm: Already downloaded                  
[SKIPPED] libgomp-12.2.1-1.fc38.x86_64.rpm: Already downloaded                 
[SKIPPED] libidn2-2.3.3-2.fc37.x86_64.rpm: Already downloaded                  
[SKIPPED] libmount-2.38.1-2.fc38.x86_64.rpm: Already downloaded                
[SKIPPED] libnghttp2-1.49.0-1.fc38.x86_64.rpm: Already downloaded              
[SKIPPED] libnsl2-2.0.0-4.fc37.x86_64.rpm: Already downloaded                  
[SKIPPED] libpkgconf-1.8.0-3.fc37.x86_64.rpm: Already downloaded               
[SKIPPED] libpsl-0.21.1-6.fc37.x86_64.rpm: Already downloaded                  
[SKIPPED] libpwquality-1.4.4-11.fc37.x86_64.rpm: Already downloaded            
[SKIPPED] libselinux-3.4-5.fc37.x86_64.rpm: Already downloaded                 
[SKIPPED] libsemanage-3.4-5.fc37.x86_64.rpm: Already downloaded                
[SKIPPED] libsepol-3.4-3.fc37.x86_64.rpm: Already downloaded                   
[SKIPPED] libsigsegv-2.14-3.fc37.x86_64.rpm: Already downloaded                
[SKIPPED] libsmartcols-2.38.1-2.fc38.x86_64.rpm: Already downloaded            
[SKIPPED] libssh-0.9.6-5.fc37.x86_64.rpm: Already downloaded                   
[SKIPPED] libssh-config-0.9.6-5.fc37.noarch.rpm: Already downloaded            
[SKIPPED] libstdc++-12.2.1-1.fc38.x86_64.rpm: Already downloaded               
[SKIPPED] libtasn1-4.18.0-3.fc37.x86_64.rpm: Already downloaded                
[SKIPPED] libtirpc-1.3.3-0.fc37.x86_64.rpm: Already downloaded                 
[SKIPPED] libunistring-1.0-2.fc37.x86_64.rpm: Already downloaded               
[SKIPPED] libutempter-1.2.1-7.fc37.x86_64.rpm: Already downloaded              
[SKIPPED] libuuid-2.38.1-2.fc38.x86_64.rpm: Already downloaded                 
[SKIPPED] libverto-0.3.2-4.fc37.x86_64.rpm: Already downloaded                 
[SKIPPED] libxcrypt-4.4.28-3.fc38.x86_64.rpm: Already downloaded               
[SKIPPED] libxml2-2.9.14-3.fc37.x86_64.rpm: Already downloaded                 
[SKIPPED] libzstd-1.5.2-3.fc37.x86_64.rpm: Already downloaded                  
[SKIPPED] lua-libs-5.4.4-4.fc37.x86_64.rpm: Already downloaded                 
[SKIPPED] lua-srpm-macros-1-7.fc37.noarch.rpm: Already downloaded              
[SKIPPED] lz4-libs-1.9.3-5.fc37.x86_64.rpm: Already downloaded                 
[SKIPPED] mpfr-4.1.0-10.fc37.x86_64.rpm: Already downloaded                    
[SKIPPED] ncurses-base-6.3-3.20220501.fc37.noarch.rpm: Already downloaded      
[SKIPPED] ncurses-libs-6.3-3.20220501.fc37.x86_64.rpm: Already downloaded      
[SKIPPED] nim-srpm-macros-3-7.fc37.noarch.rpm: Already downloaded              
[SKIPPED] ocaml-srpm-macros-7-2.fc37.noarch.rpm: Already downloaded            
[SKIPPED] openblas-srpm-macros-2-12.fc37.noarch.rpm: Already downloaded        
[SKIPPED] openldap-2.6.3-1.fc38.x86_64.rpm: Already downloaded                 
[SKIPPED] openssl-libs-3.0.5-2.fc37.x86_64.rpm: Already downloaded             
[SKIPPED] p11-kit-0.24.1-3.fc37.x86_64.rpm: Already downloaded                 
[SKIPPED] p11-kit-trust-0.24.1-3.fc37.x86_64.rpm: Already downloaded           
[SKIPPED] package-notes-srpm-macros-0.5-4.fc38.noarch.rpm: Already downloaded  
[SKIPPED] pam-1.5.2-14.fc37.x86_64.rpm: Already downloaded                     
[SKIPPED] pam-libs-1.5.2-14.fc37.x86_64.rpm: Already downloaded                
[SKIPPED] patch-2.7.6-17.fc37.x86_64.rpm: Already downloaded                   
[SKIPPED] pcre-8.45-1.fc37.2.x86_64.rpm: Already downloaded                    
[SKIPPED] pcre2-10.40-1.fc37.1.x86_64.rpm: Already downloaded                  
[SKIPPED] pcre2-syntax-10.40-1.fc37.1.noarch.rpm: Already downloaded           
[SKIPPED] perl-srpm-macros-1-46.fc37.noarch.rpm: Already downloaded            
[SKIPPED] pkgconf-1.8.0-3.fc37.x86_64.rpm: Already downloaded                  
[SKIPPED] pkgconf-m4-1.8.0-3.fc37.noarch.rpm: Already downloaded               
[SKIPPED] pkgconf-pkg-config-1.8.0-3.fc37.x86_64.rpm: Already downloaded       
[SKIPPED] popt-1.19~rc1-4.fc38.x86_64.rpm: Already downloaded                  
[SKIPPED] publicsuffix-list-dafsa-20210518-5.fc37.noarch.rpm: Already downloaded
[SKIPPED] python-srpm-macros-3.11-4.fc37.noarch.rpm: Already downloaded        
[SKIPPED] qt5-srpm-macros-5.15.5-2.fc37.noarch.rpm: Already downloaded         
[SKIPPED] readline-8.1-7.fc37.x86_64.rpm: Already downloaded                   
[SKIPPED] redhat-rpm-config-230-1.fc38.noarch.rpm: Already downloaded          
[SKIPPED] rpm-4.18.0-0.beta1.4.fc37.x86_64.rpm: Already downloaded             
[SKIPPED] rpm-build-4.18.0-0.beta1.4.fc37.x86_64.rpm: Already downloaded       
[SKIPPED] rpm-build-libs-4.18.0-0.beta1.4.fc37.x86_64.rpm: Already downloaded  
[SKIPPED] rpm-libs-4.18.0-0.beta1.4.fc37.x86_64.rpm: Already downloaded        
[SKIPPED] rpmautospec-rpm-macros-0.3.0-1.fc37.noarch.rpm: Already downloaded   
[SKIPPED] rust-srpm-macros-22-1.fc37.noarch.rpm: Already downloaded            
[SKIPPED] sed-4.8-11.fc37.x86_64.rpm: Already downloaded                       
[SKIPPED] setup-2.14.1-2.fc37.noarch.rpm: Already downloaded                   
[SKIPPED] shadow-utils-4.12.3-1.fc38.x86_64.rpm: Already downloaded            
[SKIPPED] sqlite-libs-3.39.2-2.fc37.x86_64.rpm: Already downloaded             
[SKIPPED] systemd-libs-251.4-53.fc38.x86_64.rpm: Already downloaded            
[SKIPPED] tar-1.34-3.fc36.x86_64.rpm: Already downloaded                       
[SKIPPED] tzdata-2022c-1.fc38.noarch.rpm: Already downloaded                   
[SKIPPED] unzip-6.0-58.fc37.x86_64.rpm: Already downloaded                     
[SKIPPED] util-linux-2.38.1-2.fc38.x86_64.rpm: Already downloaded              
[SKIPPED] util-linux-core-2.38.1-2.fc38.x86_64.rpm: Already downloaded         
[SKIPPED] which-2.21-35.fc37.x86_64.rpm: Already downloaded                    
[SKIPPED] xxhash-libs-0.8.1-3.fc37.x86_64.rpm: Already downloaded              
[SKIPPED] xz-5.2.6-1.fc38.x86_64.rpm: Already downloaded                       
[SKIPPED] xz-libs-5.2.6-1.fc38.x86_64.rpm: Already downloaded                  
[SKIPPED] zip-3.0-33.fc37.x86_64.rpm: Already downloaded                       
[SKIPPED] zlib-1.2.12-5.fc38.x86_64.rpm: Already downloaded                    
[SKIPPED] zstd-1.5.2-3.fc37.x86_64.rpm: Already downloaded                     
fedora                                          1.6 MB/s | 1.6 kB     00:00    
Importing GPG key 0xEB10B464:
 Userid     : "Fedora (38) <fedora-38-primary@fedoraproject.org>"
 Fingerprint: 6A51 BBAB BA3D 5467 B617 1221 809A 8D7C EB10 B464
 From       : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-38-primary
Key imported successfully
fedora                                          1.6 MB/s | 1.6 kB     00:00    
GPG key at file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-38-primary (0xEB10B464) is already installed
fedora                                          1.6 MB/s | 1.6 kB     00:00    
Importing GPG key 0x5323552A:
 Userid     : "Fedora (37) <fedora-37-primary@fedoraproject.org>"
 Fingerprint: ACB5 EE4E 831C 74BB 7C16 8D27 F55A D3FB 5323 552A
 From       : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-37-primary
Key imported successfully
Running transaction check
Transaction check succeeded.
Running transaction test
Transaction test succeeded.
Running transaction
  Running scriptlet: filesystem-3.18-2.fc37.x86_64                          1/1 
  Preparing        :                                                        1/1 
  Installing       : libgcc-12.2.1-1.fc38.x86_64                          1/152 
  Running scriptlet: libgcc-12.2.1-1.fc38.x86_64                          1/152 
  Installing       : crypto-policies-20220824-2.git2187e9c.fc38.noarc     2/152 
  Running scriptlet: crypto-policies-20220824-2.git2187e9c.fc38.noarc     2/152 
  Installing       : fedora-release-identity-basic-38-0.3.noarch          3/152 
  Installing       : tzdata-2022c-1.fc38.noarch                           4/152 
  Installing       : rust-srpm-macros-22-1.fc37.noarch                    5/152 
  Installing       : qt5-srpm-macros-5.15.5-2.fc37.noarch                 6/152 
  Installing       : publicsuffix-list-dafsa-20210518-5.fc37.noarch       7/152 
  Installing       : pkgconf-m4-1.8.0-3.fc37.noarch                       8/152 
  Installing       : perl-srpm-macros-1-46.fc37.noarch                    9/152 
  Installing       : pcre2-syntax-10.40-1.fc37.1.noarch                  10/152 
  Installing       : package-notes-srpm-macros-0.5-4.fc38.noarch         11/152 
  Installing       : openblas-srpm-macros-2-12.fc37.noarch               12/152 
  Installing       : ocaml-srpm-macros-7-2.fc37.noarch                   13/152 
  Installing       : nim-srpm-macros-3-7.fc37.noarch                     14/152 
  Installing       : ncurses-base-6.3-3.20220501.fc37.noarch             15/152 
  Installing       : libssh-config-0.9.6-5.fc37.noarch                   16/152 
  Installing       : kernel-srpm-macros-1.0-15.fc37.noarch               17/152 
  Installing       : gnat-srpm-macros-4-16.fc37.noarch                   18/152 
  Installing       : ghc-srpm-macros-1.5.0-7.fc37.noarch                 19/152 
  Installing       : fpc-srpm-macros-1.3-6.fc37.noarch                   20/152 
  Installing       : fedora-gpg-keys-38-0.3.noarch                       21/152 
  Installing       : fedora-release-38-0.3.noarch                        22/152 
  Installing       : fedora-release-common-38-0.3.noarch                 23/152 
  Installing       : fedora-repos-rawhide-38-0.3.noarch                  24/152 
  Installing       : fedora-repos-38-0.3.noarch                          25/152 
  Installing       : setup-2.14.1-2.fc37.noarch                          26/152 
warning: /etc/hosts created as /etc/hosts.rpmnew

  Running scriptlet: setup-2.14.1-2.fc37.noarch                          26/152 
  Installing       : filesystem-3.18-2.fc37.x86_64                       27/152 
  Installing       : basesystem-11-14.fc37.noarch                        28/152 
  Installing       : glibc-gconv-extra-2.36.9000-4.fc38.x86_64           29/152 
  Running scriptlet: glibc-gconv-extra-2.36.9000-4.fc38.x86_64           29/152 
  Installing       : glibc-minimal-langpack-2.36.9000-4.fc38.x86_64      30/152 
  Installing       : glibc-common-2.36.9000-4.fc38.x86_64                31/152 
  Running scriptlet: glibc-2.36.9000-4.fc38.x86_64                       32/152 
  Installing       : glibc-2.36.9000-4.fc38.x86_64                       32/152 
  Running scriptlet: glibc-2.36.9000-4.fc38.x86_64                       32/152 
  Installing       : ncurses-libs-6.3-3.20220501.fc37.x86_64             33/152 
  Installing       : bash-5.1.16-3.fc37.x86_64                           34/152 
  Running scriptlet: bash-5.1.16-3.fc37.x86_64                           34/152 
  Installing       : zlib-1.2.12-5.fc38.x86_64                           35/152 
  Installing       : xz-libs-5.2.6-1.fc38.x86_64                         36/152 
  Installing       : bzip2-libs-1.0.8-12.fc37.x86_64                     37/152 
  Installing       : elfutils-libelf-0.187-8.fc38.x86_64                 38/152 
  Installing       : libstdc++-12.2.1-1.fc38.x86_64                      39/152 
  Installing       : libuuid-2.38.1-2.fc38.x86_64                        40/152 
  Installing       : libzstd-1.5.2-3.fc37.x86_64                         41/152 
  Installing       : popt-1.19~rc1-4.fc38.x86_64                         42/152 
  Installing       : libblkid-2.38.1-2.fc38.x86_64                       43/152 
  Installing       : readline-8.1-7.fc37.x86_64                          44/152 
  Installing       : gmp-1:6.2.1-3.fc37.x86_64                           45/152 
  Installing       : libattr-2.5.1-5.fc37.x86_64                         46/152 
  Installing       : libacl-2.3.1-4.fc37.x86_64                          47/152 
  Installing       : libcap-2.48-5.fc37.x86_64                           48/152 
  Installing       : libxcrypt-4.4.28-3.fc38.x86_64                      49/152 
  Installing       : lz4-libs-1.9.3-5.fc37.x86_64                        50/152 
  Installing       : systemd-libs-251.4-53.fc38.x86_64                   51/152 
  Installing       : mpfr-4.1.0-10.fc37.x86_64                           52/152 
  Installing       : dwz-0.14-7.fc37.x86_64                              53/152 
  Installing       : unzip-6.0-58.fc37.x86_64                            54/152 
  Installing       : file-libs-5.42-4.fc38.x86_64                        55/152 
  Installing       : file-5.42-4.fc38.x86_64                             56/152 
  Installing       : sqlite-libs-3.39.2-2.fc37.x86_64                    57/152 
  Installing       : alternatives-1.19-3.fc37.x86_64                     58/152 
  Installing       : libcap-ng-0.8.3-3.fc37.x86_64                       59/152 
  Installing       : audit-libs-3.0.9-1.fc38.x86_64                      60/152 
  Installing       : libcom_err-1.46.5-3.fc37.x86_64                     61/152 
  Installing       : libeconf-0.4.0-4.fc37.x86_64                        62/152 
  Installing       : pam-libs-1.5.2-14.fc37.x86_64                       63/152 
  Installing       : libsepol-3.4-3.fc37.x86_64                          64/152 
  Installing       : libsmartcols-2.38.1-2.fc38.x86_64                   65/152 
  Installing       : libunistring-1.0-2.fc37.x86_64                      66/152 
  Installing       : libidn2-2.3.3-2.fc37.x86_64                         67/152 
  Installing       : lua-libs-5.4.4-4.fc37.x86_64                        68/152 
  Installing       : libpsl-0.21.1-6.fc37.x86_64                         69/152 
  Installing       : zip-3.0-33.fc37.x86_64                              70/152 
  Installing       : zstd-1.5.2-3.fc37.x86_64                            71/152 
  Installing       : libfdisk-2.38.1-2.fc38.x86_64                       72/152 
  Installing       : bzip2-1.0.8-12.fc37.x86_64                          73/152 
  Installing       : libxml2-2.9.14-3.fc37.x86_64                        74/152 
  Installing       : ed-1.18-2.fc37.x86_64                               75/152 
  Installing       : elfutils-default-yama-scope-0.187-8.fc38.noarch     76/152 
  Running scriptlet: elfutils-default-yama-scope-0.187-8.fc38.noarch     76/152 
  Installing       : libbrotli-1.0.9-9.fc38.x86_64                       77/152 
  Installing       : cpio-2.13-13.fc37.x86_64                            78/152 
  Installing       : diffutils-3.8-3.fc37.x86_64                         79/152 
  Installing       : gdbm-libs-1:1.23-2.fc37.x86_64                      80/152 
  Installing       : cyrus-sasl-lib-2.1.28-8.fc38.x86_64                 81/152 
  Installing       : jansson-2.13.1-5.fc37.x86_64                        82/152 
  Installing       : keyutils-libs-1.6.1-5.fc37.x86_64                   83/152 
  Installing       : libdb-5.3.28-53.fc37.x86_64                         84/152 
  Installing       : libffi-3.4.2-9.fc37.x86_64                          85/152 
  Installing       : p11-kit-0.24.1-3.fc37.x86_64                        86/152 
  Installing       : libgomp-12.2.1-1.fc38.x86_64                        87/152 
  Installing       : libnghttp2-1.49.0-1.fc38.x86_64                     88/152 
  Installing       : libpkgconf-1.8.0-3.fc37.x86_64                      89/152 
  Installing       : pkgconf-1.8.0-3.fc37.x86_64                         90/152 
  Installing       : pkgconf-pkg-config-1.8.0-3.fc37.x86_64              91/152 
  Installing       : libsigsegv-2.14-3.fc37.x86_64                       92/152 
  Installing       : gawk-5.1.1-4.fc37.x86_64                            93/152 
  Installing       : libtasn1-4.18.0-3.fc37.x86_64                       94/152 
  Installing       : p11-kit-trust-0.24.1-3.fc37.x86_64                  95/152 
  Running scriptlet: p11-kit-trust-0.24.1-3.fc37.x86_64                  95/152 
  Installing       : libverto-0.3.2-4.fc37.x86_64                        96/152 
  Installing       : pcre-8.45-1.fc37.2.x86_64                           97/152 
  Installing       : grep-3.7-4.fc37.x86_64                              98/152 
  Installing       : xz-5.2.6-1.fc38.x86_64                              99/152 
  Installing       : pcre2-10.40-1.fc37.1.x86_64                        100/152 
  Installing       : libselinux-3.4-5.fc37.x86_64                       101/152 
  Installing       : sed-4.8-11.fc37.x86_64                             102/152 
  Installing       : findutils-1:4.9.0-2.fc37.x86_64                    103/152 
  Installing       : libmount-2.38.1-2.fc38.x86_64                      104/152 
  Installing       : util-linux-core-2.38.1-2.fc38.x86_64               105/152 
  Installing       : libsemanage-3.4-5.fc37.x86_64                      106/152 
  Installing       : shadow-utils-2:4.12.3-1.fc38.x86_64                107/152 
  Running scriptlet: libutempter-1.2.1-7.fc37.x86_64                    108/152 
  Installing       : libutempter-1.2.1-7.fc37.x86_64                    108/152 
  Installing       : patch-2.7.6-17.fc37.x86_64                         109/152 
  Installing       : tar-2:1.34-3.fc36.x86_64                           110/152 
  Installing       : xxhash-libs-0.8.1-3.fc37.x86_64                    111/152 
  Installing       : coreutils-common-9.1-7.fc38.x86_64                 112/152 
  Installing       : openssl-libs-1:3.0.5-2.fc37.x86_64                 113/152 
  Installing       : coreutils-9.1-7.fc38.x86_64                        114/152 
  Running scriptlet: ca-certificates-2022.2.54-5.fc37.noarch            115/152 
  Installing       : ca-certificates-2022.2.54-5.fc37.noarch            115/152 
  Running scriptlet: ca-certificates-2022.2.54-5.fc37.noarch            115/152 
  Installing       : krb5-libs-1.19.2-11.fc37.1.x86_64                  116/152 
  Installing       : libtirpc-1.3.3-0.fc37.x86_64                       117/152 
  Running scriptlet: authselect-libs-1.4.0-3.fc37.x86_64                118/152 
  Installing       : authselect-libs-1.4.0-3.fc37.x86_64                118/152 
  Installing       : gzip-1.12-2.fc37.x86_64                            119/152 
  Installing       : cracklib-2.9.7-30.fc38.x86_64                      120/152 
  Installing       : libpwquality-1.4.4-11.fc37.x86_64                  121/152 
  Installing       : authselect-1.4.0-3.fc37.x86_64                     122/152 
  Installing       : libnsl2-2.0.0-4.fc37.x86_64                        123/152 
  Installing       : pam-1.5.2-14.fc37.x86_64                           124/152 
  Installing       : libssh-0.9.6-5.fc37.x86_64                         125/152 
  Installing       : libarchive-3.6.1-2.fc37.x86_64                     126/152 
  Installing       : libevent-2.1.12-7.fc37.x86_64                      127/152 
  Installing       : openldap-2.6.3-1.fc38.x86_64                       128/152 
  Installing       : libcurl-7.84.0-3.fc38.x86_64                       129/152 
  Installing       : elfutils-libs-0.187-8.fc38.x86_64                  130/152 
  Installing       : elfutils-debuginfod-client-0.187-8.fc38.x86_64     131/152 
  Installing       : binutils-gold-2.39-2.fc38.x86_64                   132/152 
  Installing       : binutils-2.39-2.fc38.x86_64                        133/152 
  Running scriptlet: binutils-2.39-2.fc38.x86_64                        133/152 
  Installing       : elfutils-0.187-8.fc38.x86_64                       134/152 
  Installing       : gdb-minimal-12.1-4.fc37.x86_64                     135/152 
  Installing       : debugedit-5.0-5.fc37.x86_64                        136/152 
  Installing       : curl-7.84.0-3.fc38.x86_64                          137/152 
  Installing       : rpm-libs-4.18.0-0.beta1.4.fc37.x86_64              138/152 
  Running scriptlet: rpm-4.18.0-0.beta1.4.fc37.x86_64                   139/152 
  Installing       : rpm-4.18.0-0.beta1.4.fc37.x86_64                   139/152 
  Installing       : efi-srpm-macros-5-6.fc37.noarch                    140/152 
  Installing       : lua-srpm-macros-1-7.fc37.noarch                    141/152 
  Installing       : rpmautospec-rpm-macros-0.3.0-1.fc37.noarch         142/152 
  Installing       : rpm-build-libs-4.18.0-0.beta1.4.fc37.x86_64        143/152 
  Installing       : ansible-srpm-macros-1-7.fc38.noarch                144/152 
  Installing       : fonts-srpm-macros-1:2.0.5-9.fc38.noarch            145/152 
  Installing       : go-srpm-macros-3.1.0-4.fc37.noarch                 146/152 
  Installing       : python-srpm-macros-3.11-4.fc37.noarch              147/152 
  Installing       : redhat-rpm-config-230-1.fc38.noarch                148/152 
  Installing       : rpm-build-4.18.0-0.beta1.4.fc37.x86_64             149/152 
  Installing       : util-linux-2.38.1-2.fc38.x86_64                    150/152 
  Installing       : which-2.21-35.fc37.x86_64                          151/152 
  Installing       : info-6.8-4.fc37.x86_64                             152/152 
  Running scriptlet: filesystem-3.18-2.fc37.x86_64                      152/152 
  Running scriptlet: ca-certificates-2022.2.54-5.fc37.noarch            152/152 
  Running scriptlet: authselect-libs-1.4.0-3.fc37.x86_64                152/152 
  Running scriptlet: rpm-4.18.0-0.beta1.4.fc37.x86_64                   152/152 
  Running scriptlet: info-6.8-4.fc37.x86_64                             152/152 
  Verifying        : file-5.42-4.fc38.x86_64                              1/152 
  Verifying        : file-libs-5.42-4.fc38.x86_64                         2/152 
  Verifying        : libbrotli-1.0.9-9.fc38.x86_64                        3/152 
  Verifying        : alternatives-1.19-3.fc37.x86_64                      4/152 
  Verifying        : ansible-srpm-macros-1-7.fc38.noarch                  5/152 
  Verifying        : audit-libs-3.0.9-1.fc38.x86_64                       6/152 
  Verifying        : authselect-1.4.0-3.fc37.x86_64                       7/152 
  Verifying        : authselect-libs-1.4.0-3.fc37.x86_64                  8/152 
  Verifying        : basesystem-11-14.fc37.noarch                         9/152 
  Verifying        : bash-5.1.16-3.fc37.x86_64                           10/152 
  Verifying        : binutils-2.39-2.fc38.x86_64                         11/152 
  Verifying        : binutils-gold-2.39-2.fc38.x86_64                    12/152 
  Verifying        : bzip2-1.0.8-12.fc37.x86_64                          13/152 
  Verifying        : bzip2-libs-1.0.8-12.fc37.x86_64                     14/152 
  Verifying        : ca-certificates-2022.2.54-5.fc37.noarch             15/152 
  Verifying        : coreutils-9.1-7.fc38.x86_64                         16/152 
  Verifying        : coreutils-common-9.1-7.fc38.x86_64                  17/152 
  Verifying        : cpio-2.13-13.fc37.x86_64                            18/152 
  Verifying        : cracklib-2.9.7-30.fc38.x86_64                       19/152 
  Verifying        : crypto-policies-20220824-2.git2187e9c.fc38.noarc    20/152 
  Verifying        : curl-7.84.0-3.fc38.x86_64                           21/152 
  Verifying        : cyrus-sasl-lib-2.1.28-8.fc38.x86_64                 22/152 
  Verifying        : debugedit-5.0-5.fc37.x86_64                         23/152 
  Verifying        : diffutils-3.8-3.fc37.x86_64                         24/152 
  Verifying        : dwz-0.14-7.fc37.x86_64                              25/152 
  Verifying        : ed-1.18-2.fc37.x86_64                               26/152 
  Verifying        : efi-srpm-macros-5-6.fc37.noarch                     27/152 
  Verifying        : elfutils-0.187-8.fc38.x86_64                        28/152 
  Verifying        : elfutils-debuginfod-client-0.187-8.fc38.x86_64      29/152 
  Verifying        : elfutils-default-yama-scope-0.187-8.fc38.noarch     30/152 
  Verifying        : elfutils-libelf-0.187-8.fc38.x86_64                 31/152 
  Verifying        : elfutils-libs-0.187-8.fc38.x86_64                   32/152 
  Verifying        : fedora-gpg-keys-38-0.3.noarch                       33/152 
  Verifying        : fedora-release-38-0.3.noarch                        34/152 
  Verifying        : fedora-release-common-38-0.3.noarch                 35/152 
  Verifying        : fedora-release-identity-basic-38-0.3.noarch         36/152 
  Verifying        : fedora-repos-38-0.3.noarch                          37/152 
  Verifying        : fedora-repos-rawhide-38-0.3.noarch                  38/152 
  Verifying        : filesystem-3.18-2.fc37.x86_64                       39/152 
  Verifying        : findutils-1:4.9.0-2.fc37.x86_64                     40/152 
  Verifying        : fonts-srpm-macros-1:2.0.5-9.fc38.noarch             41/152 
  Verifying        : fpc-srpm-macros-1.3-6.fc37.noarch                   42/152 
  Verifying        : gawk-5.1.1-4.fc37.x86_64                            43/152 
  Verifying        : gdb-minimal-12.1-4.fc37.x86_64                      44/152 
  Verifying        : gdbm-libs-1:1.23-2.fc37.x86_64                      45/152 
  Verifying        : ghc-srpm-macros-1.5.0-7.fc37.noarch                 46/152 
  Verifying        : glibc-2.36.9000-4.fc38.x86_64                       47/152 
  Verifying        : glibc-common-2.36.9000-4.fc38.x86_64                48/152 
  Verifying        : glibc-gconv-extra-2.36.9000-4.fc38.x86_64           49/152 
  Verifying        : glibc-minimal-langpack-2.36.9000-4.fc38.x86_64      50/152 
  Verifying        : gmp-1:6.2.1-3.fc37.x86_64                           51/152 
  Verifying        : gnat-srpm-macros-4-16.fc37.noarch                   52/152 
  Verifying        : go-srpm-macros-3.1.0-4.fc37.noarch                  53/152 
  Verifying        : grep-3.7-4.fc37.x86_64                              54/152 
  Verifying        : gzip-1.12-2.fc37.x86_64                             55/152 
  Verifying        : info-6.8-4.fc37.x86_64                              56/152 
  Verifying        : jansson-2.13.1-5.fc37.x86_64                        57/152 
  Verifying        : kernel-srpm-macros-1.0-15.fc37.noarch               58/152 
  Verifying        : keyutils-libs-1.6.1-5.fc37.x86_64                   59/152 
  Verifying        : krb5-libs-1.19.2-11.fc37.1.x86_64                   60/152 
  Verifying        : libacl-2.3.1-4.fc37.x86_64                          61/152 
  Verifying        : libarchive-3.6.1-2.fc37.x86_64                      62/152 
  Verifying        : libattr-2.5.1-5.fc37.x86_64                         63/152 
  Verifying        : libblkid-2.38.1-2.fc38.x86_64                       64/152 
  Verifying        : libcap-2.48-5.fc37.x86_64                           65/152 
  Verifying        : libcap-ng-0.8.3-3.fc37.x86_64                       66/152 
  Verifying        : libcom_err-1.46.5-3.fc37.x86_64                     67/152 
  Verifying        : libcurl-7.84.0-3.fc38.x86_64                        68/152 
  Verifying        : libdb-5.3.28-53.fc37.x86_64                         69/152 
  Verifying        : libeconf-0.4.0-4.fc37.x86_64                        70/152 
  Verifying        : libevent-2.1.12-7.fc37.x86_64                       71/152 
  Verifying        : libfdisk-2.38.1-2.fc38.x86_64                       72/152 
  Verifying        : libffi-3.4.2-9.fc37.x86_64                          73/152 
  Verifying        : libgcc-12.2.1-1.fc38.x86_64                         74/152 
  Verifying        : libgomp-12.2.1-1.fc38.x86_64                        75/152 
  Verifying        : libidn2-2.3.3-2.fc37.x86_64                         76/152 
  Verifying        : libmount-2.38.1-2.fc38.x86_64                       77/152 
  Verifying        : libnghttp2-1.49.0-1.fc38.x86_64                     78/152 
  Verifying        : libnsl2-2.0.0-4.fc37.x86_64                         79/152 
  Verifying        : libpkgconf-1.8.0-3.fc37.x86_64                      80/152 
  Verifying        : libpsl-0.21.1-6.fc37.x86_64                         81/152 
  Verifying        : libpwquality-1.4.4-11.fc37.x86_64                   82/152 
  Verifying        : libselinux-3.4-5.fc37.x86_64                        83/152 
  Verifying        : libsemanage-3.4-5.fc37.x86_64                       84/152 
  Verifying        : libsepol-3.4-3.fc37.x86_64                          85/152 
  Verifying        : libsigsegv-2.14-3.fc37.x86_64                       86/152 
  Verifying        : libsmartcols-2.38.1-2.fc38.x86_64                   87/152 
  Verifying        : libssh-0.9.6-5.fc37.x86_64                          88/152 
  Verifying        : libssh-config-0.9.6-5.fc37.noarch                   89/152 
  Verifying        : libstdc++-12.2.1-1.fc38.x86_64                      90/152 
  Verifying        : libtasn1-4.18.0-3.fc37.x86_64                       91/152 
  Verifying        : libtirpc-1.3.3-0.fc37.x86_64                        92/152 
  Verifying        : libunistring-1.0-2.fc37.x86_64                      93/152 
  Verifying        : libutempter-1.2.1-7.fc37.x86_64                     94/152 
  Verifying        : libuuid-2.38.1-2.fc38.x86_64                        95/152 
  Verifying        : libverto-0.3.2-4.fc37.x86_64                        96/152 
  Verifying        : libxcrypt-4.4.28-3.fc38.x86_64                      97/152 
  Verifying        : libxml2-2.9.14-3.fc37.x86_64                        98/152 
  Verifying        : libzstd-1.5.2-3.fc37.x86_64                         99/152 
  Verifying        : lua-libs-5.4.4-4.fc37.x86_64                       100/152 
  Verifying        : lua-srpm-macros-1-7.fc37.noarch                    101/152 
  Verifying        : lz4-libs-1.9.3-5.fc37.x86_64                       102/152 
  Verifying        : mpfr-4.1.0-10.fc37.x86_64                          103/152 
  Verifying        : ncurses-base-6.3-3.20220501.fc37.noarch            104/152 
  Verifying        : ncurses-libs-6.3-3.20220501.fc37.x86_64            105/152 
  Verifying        : nim-srpm-macros-3-7.fc37.noarch                    106/152 
  Verifying        : ocaml-srpm-macros-7-2.fc37.noarch                  107/152 
  Verifying        : openblas-srpm-macros-2-12.fc37.noarch              108/152 
  Verifying        : openldap-2.6.3-1.fc38.x86_64                       109/152 
  Verifying        : openssl-libs-1:3.0.5-2.fc37.x86_64                 110/152 
  Verifying        : p11-kit-0.24.1-3.fc37.x86_64                       111/152 
  Verifying        : p11-kit-trust-0.24.1-3.fc37.x86_64                 112/152 
  Verifying        : package-notes-srpm-macros-0.5-4.fc38.noarch        113/152 
  Verifying        : pam-1.5.2-14.fc37.x86_64                           114/152 
  Verifying        : pam-libs-1.5.2-14.fc37.x86_64                      115/152 
  Verifying        : patch-2.7.6-17.fc37.x86_64                         116/152 
  Verifying        : pcre-8.45-1.fc37.2.x86_64                          117/152 
  Verifying        : pcre2-10.40-1.fc37.1.x86_64                        118/152 
  Verifying        : pcre2-syntax-10.40-1.fc37.1.noarch                 119/152 
  Verifying        : perl-srpm-macros-1-46.fc37.noarch                  120/152 
  Verifying        : pkgconf-1.8.0-3.fc37.x86_64                        121/152 
  Verifying        : pkgconf-m4-1.8.0-3.fc37.noarch                     122/152 
  Verifying        : pkgconf-pkg-config-1.8.0-3.fc37.x86_64             123/152 
  Verifying        : popt-1.19~rc1-4.fc38.x86_64                        124/152 
  Verifying        : publicsuffix-list-dafsa-20210518-5.fc37.noarch     125/152 
  Verifying        : python-srpm-macros-3.11-4.fc37.noarch              126/152 
  Verifying        : qt5-srpm-macros-5.15.5-2.fc37.noarch               127/152 
  Verifying        : readline-8.1-7.fc37.x86_64                         128/152 
  Verifying        : redhat-rpm-config-230-1.fc38.noarch                129/152 
  Verifying        : rpm-4.18.0-0.beta1.4.fc37.x86_64                   130/152 
  Verifying        : rpm-build-4.18.0-0.beta1.4.fc37.x86_64             131/152 
  Verifying        : rpm-build-libs-4.18.0-0.beta1.4.fc37.x86_64        132/152 
  Verifying        : rpm-libs-4.18.0-0.beta1.4.fc37.x86_64              133/152 
  Verifying        : rpmautospec-rpm-macros-0.3.0-1.fc37.noarch         134/152 
  Verifying        : rust-srpm-macros-22-1.fc37.noarch                  135/152 
  Verifying        : sed-4.8-11.fc37.x86_64                             136/152 
  Verifying        : setup-2.14.1-2.fc37.noarch                         137/152 
  Verifying        : shadow-utils-2:4.12.3-1.fc38.x86_64                138/152 
  Verifying        : sqlite-libs-3.39.2-2.fc37.x86_64                   139/152 
  Verifying        : systemd-libs-251.4-53.fc38.x86_64                  140/152 
  Verifying        : tar-2:1.34-3.fc36.x86_64                           141/152 
  Verifying        : tzdata-2022c-1.fc38.noarch                         142/152 
  Verifying        : unzip-6.0-58.fc37.x86_64                           143/152 
  Verifying        : util-linux-2.38.1-2.fc38.x86_64                    144/152 
  Verifying        : util-linux-core-2.38.1-2.fc38.x86_64               145/152 
  Verifying        : which-2.21-35.fc37.x86_64                          146/152 
  Verifying        : xxhash-libs-0.8.1-3.fc37.x86_64                    147/152 
  Verifying        : xz-5.2.6-1.fc38.x86_64                             148/152 
  Verifying        : xz-libs-5.2.6-1.fc38.x86_64                        149/152 
  Verifying        : zip-3.0-33.fc37.x86_64                             150/152 
  Verifying        : zlib-1.2.12-5.fc38.x86_64                          151/152 
  Verifying        : zstd-1.5.2-3.fc37.x86_64                           152/152 

Installed:
  alternatives-1.19-3.fc37.x86_64                                               
  ansible-srpm-macros-1-7.fc38.noarch                                           
  audit-libs-3.0.9-1.fc38.x86_64                                                
  authselect-1.4.0-3.fc37.x86_64                                                
  authselect-libs-1.4.0-3.fc37.x86_64                                           
  basesystem-11-14.fc37.noarch                                                  
  bash-5.1.16-3.fc37.x86_64                                                     
  binutils-2.39-2.fc38.x86_64                                                   
  binutils-gold-2.39-2.fc38.x86_64                                              
  bzip2-1.0.8-12.fc37.x86_64                                                    
  bzip2-libs-1.0.8-12.fc37.x86_64                                               
  ca-certificates-2022.2.54-5.fc37.noarch                                       
  coreutils-9.1-7.fc38.x86_64                                                   
  coreutils-common-9.1-7.fc38.x86_64                                            
  cpio-2.13-13.fc37.x86_64                                                      
  cracklib-2.9.7-30.fc38.x86_64                                                 
  crypto-policies-20220824-2.git2187e9c.fc38.noarch                             
  curl-7.84.0-3.fc38.x86_64                                                     
  cyrus-sasl-lib-2.1.28-8.fc38.x86_64                                           
  debugedit-5.0-5.fc37.x86_64                                                   
  diffutils-3.8-3.fc37.x86_64                                                   
  dwz-0.14-7.fc37.x86_64                                                        
  ed-1.18-2.fc37.x86_64                                                         
  efi-srpm-macros-5-6.fc37.noarch                                               
  elfutils-0.187-8.fc38.x86_64                                                  
  elfutils-debuginfod-client-0.187-8.fc38.x86_64                                
  elfutils-default-yama-scope-0.187-8.fc38.noarch                               
  elfutils-libelf-0.187-8.fc38.x86_64                                           
  elfutils-libs-0.187-8.fc38.x86_64                                             
  fedora-gpg-keys-38-0.3.noarch                                                 
  fedora-release-38-0.3.noarch                                                  
  fedora-release-common-38-0.3.noarch                                           
  fedora-release-identity-basic-38-0.3.noarch                                   
  fedora-repos-38-0.3.noarch                                                    
  fedora-repos-rawhide-38-0.3.noarch                                            
  file-5.42-4.fc38.x86_64                                                       
  file-libs-5.42-4.fc38.x86_64                                                  
  filesystem-3.18-2.fc37.x86_64                                                 
  findutils-1:4.9.0-2.fc37.x86_64                                               
  fonts-srpm-macros-1:2.0.5-9.fc38.noarch                                       
  fpc-srpm-macros-1.3-6.fc37.noarch                                             
  gawk-5.1.1-4.fc37.x86_64                                                      
  gdb-minimal-12.1-4.fc37.x86_64                                                
  gdbm-libs-1:1.23-2.fc37.x86_64                                                
  ghc-srpm-macros-1.5.0-7.fc37.noarch                                           
  glibc-2.36.9000-4.fc38.x86_64                                                 
  glibc-common-2.36.9000-4.fc38.x86_64                                          
  glibc-gconv-extra-2.36.9000-4.fc38.x86_64                                     
  glibc-minimal-langpack-2.36.9000-4.fc38.x86_64                                
  gmp-1:6.2.1-3.fc37.x86_64                                                     
  gnat-srpm-macros-4-16.fc37.noarch                                             
  go-srpm-macros-3.1.0-4.fc37.noarch                                            
  grep-3.7-4.fc37.x86_64                                                        
  gzip-1.12-2.fc37.x86_64                                                       
  info-6.8-4.fc37.x86_64                                                        
  jansson-2.13.1-5.fc37.x86_64                                                  
  kernel-srpm-macros-1.0-15.fc37.noarch                                         
  keyutils-libs-1.6.1-5.fc37.x86_64                                             
  krb5-libs-1.19.2-11.fc37.1.x86_64                                             
  libacl-2.3.1-4.fc37.x86_64                                                    
  libarchive-3.6.1-2.fc37.x86_64                                                
  libattr-2.5.1-5.fc37.x86_64                                                   
  libblkid-2.38.1-2.fc38.x86_64                                                 
  libbrotli-1.0.9-9.fc38.x86_64                                                 
  libcap-2.48-5.fc37.x86_64                                                     
  libcap-ng-0.8.3-3.fc37.x86_64                                                 
  libcom_err-1.46.5-3.fc37.x86_64                                               
  libcurl-7.84.0-3.fc38.x86_64                                                  
  libdb-5.3.28-53.fc37.x86_64                                                   
  libeconf-0.4.0-4.fc37.x86_64                                                  
  libevent-2.1.12-7.fc37.x86_64                                                 
  libfdisk-2.38.1-2.fc38.x86_64                                                 
  libffi-3.4.2-9.fc37.x86_64                                                    
  libgcc-12.2.1-1.fc38.x86_64                                                   
  libgomp-12.2.1-1.fc38.x86_64                                                  
  libidn2-2.3.3-2.fc37.x86_64                                                   
  libmount-2.38.1-2.fc38.x86_64                                                 
  libnghttp2-1.49.0-1.fc38.x86_64                                               
  libnsl2-2.0.0-4.fc37.x86_64                                                   
  libpkgconf-1.8.0-3.fc37.x86_64                                                
  libpsl-0.21.1-6.fc37.x86_64                                                   
  libpwquality-1.4.4-11.fc37.x86_64                                             
  libselinux-3.4-5.fc37.x86_64                                                  
  libsemanage-3.4-5.fc37.x86_64                                                 
  libsepol-3.4-3.fc37.x86_64                                                    
  libsigsegv-2.14-3.fc37.x86_64                                                 
  libsmartcols-2.38.1-2.fc38.x86_64                                             
  libssh-0.9.6-5.fc37.x86_64                                                    
  libssh-config-0.9.6-5.fc37.noarch                                             
  libstdc++-12.2.1-1.fc38.x86_64                                                
  libtasn1-4.18.0-3.fc37.x86_64                                                 
  libtirpc-1.3.3-0.fc37.x86_64                                                  
  libunistring-1.0-2.fc37.x86_64                                                
  libutempter-1.2.1-7.fc37.x86_64                                               
  libuuid-2.38.1-2.fc38.x86_64                                                  
  libverto-0.3.2-4.fc37.x86_64                                                  
  libxcrypt-4.4.28-3.fc38.x86_64                                                
  libxml2-2.9.14-3.fc37.x86_64                                                  
  libzstd-1.5.2-3.fc37.x86_64                                                   
  lua-libs-5.4.4-4.fc37.x86_64                                                  
  lua-srpm-macros-1-7.fc37.noarch                                               
  lz4-libs-1.9.3-5.fc37.x86_64                                                  
  mpfr-4.1.0-10.fc37.x86_64                                                     
  ncurses-base-6.3-3.20220501.fc37.noarch                                       
  ncurses-libs-6.3-3.20220501.fc37.x86_64                                       
  nim-srpm-macros-3-7.fc37.noarch                                               
  ocaml-srpm-macros-7-2.fc37.noarch                                             
  openblas-srpm-macros-2-12.fc37.noarch                                         
  openldap-2.6.3-1.fc38.x86_64                                                  
  openssl-libs-1:3.0.5-2.fc37.x86_64                                            
  p11-kit-0.24.1-3.fc37.x86_64                                                  
  p11-kit-trust-0.24.1-3.fc37.x86_64                                            
  package-notes-srpm-macros-0.5-4.fc38.noarch                                   
  pam-1.5.2-14.fc37.x86_64                                                      
  pam-libs-1.5.2-14.fc37.x86_64                                                 
  patch-2.7.6-17.fc37.x86_64                                                    
  pcre-8.45-1.fc37.2.x86_64                                                     
  pcre2-10.40-1.fc37.1.x86_64                                                   
  pcre2-syntax-10.40-1.fc37.1.noarch                                            
  perl-srpm-macros-1-46.fc37.noarch                                             
  pkgconf-1.8.0-3.fc37.x86_64                                                   
  pkgconf-m4-1.8.0-3.fc37.noarch                                                
  pkgconf-pkg-config-1.8.0-3.fc37.x86_64                                        
  popt-1.19~rc1-4.fc38.x86_64                                                   
  publicsuffix-list-dafsa-20210518-5.fc37.noarch                                
  python-srpm-macros-3.11-4.fc37.noarch                                         
  qt5-srpm-macros-5.15.5-2.fc37.noarch                                          
  readline-8.1-7.fc37.x86_64                                                    
  redhat-rpm-config-230-1.fc38.noarch                                           
  rpm-4.18.0-0.beta1.4.fc37.x86_64                                              
  rpm-build-4.18.0-0.beta1.4.fc37.x86_64                                        
  rpm-build-libs-4.18.0-0.beta1.4.fc37.x86_64                                   
  rpm-libs-4.18.0-0.beta1.4.fc37.x86_64                                         
  rpmautospec-rpm-macros-0.3.0-1.fc37.noarch                                    
  rust-srpm-macros-22-1.fc37.noarch                                             
  sed-4.8-11.fc37.x86_64                                                        
  setup-2.14.1-2.fc37.noarch                                                    
  shadow-utils-2:4.12.3-1.fc38.x86_64                                           
  sqlite-libs-3.39.2-2.fc37.x86_64                                              
  systemd-libs-251.4-53.fc38.x86_64                                             
  tar-2:1.34-3.fc36.x86_64                                                      
  tzdata-2022c-1.fc38.noarch                                                    
  unzip-6.0-58.fc37.x86_64                                                      
  util-linux-2.38.1-2.fc38.x86_64                                               
  util-linux-core-2.38.1-2.fc38.x86_64                                          
  which-2.21-35.fc37.x86_64                                                     
  xxhash-libs-0.8.1-3.fc37.x86_64                                               
  xz-5.2.6-1.fc38.x86_64                                                        
  xz-libs-5.2.6-1.fc38.x86_64                                                   
  zip-3.0-33.fc37.x86_64                                                        
  zlib-1.2.12-5.fc38.x86_64                                                     
  zstd-1.5.2-3.fc37.x86_64                                                      

Complete!
Finish: dnf install
Start: creating root cache
Finish: creating root cache
Finish: chroot init
INFO: Installed packages:
INFO: lua-srpm-macros-1-7.fc37.noarch
perl-srpm-macros-1-46.fc37.noarch
crypto-policies-20220824-2.git2187e9c.fc38.noarch
alternatives-1.19-3.fc37.x86_64
libcom_err-1.46.5-3.fc37.x86_64
fedora-release-common-38-0.3.noarch
bzip2-libs-1.0.8-12.fc37.x86_64
libfdisk-2.38.1-2.fc38.x86_64
fedora-release-38-0.3.noarch
libstdc++-12.2.1-1.fc38.x86_64
info-6.8-4.fc37.x86_64
util-linux-2.38.1-2.fc38.x86_64
setup-2.14.1-2.fc37.noarch
libsigsegv-2.14-3.fc37.x86_64
zstd-1.5.2-3.fc37.x86_64
redhat-rpm-config-230-1.fc38.noarch
gpg-pubkey-5323552a-6112bcdc
ocaml-srpm-macros-7-2.fc37.noarch
fedora-gpg-keys-38-0.3.noarch
libxml2-2.9.14-3.fc37.x86_64
libffi-3.4.2-9.fc37.x86_64
elfutils-libs-0.187-8.fc38.x86_64
xz-libs-5.2.6-1.fc38.x86_64
authselect-1.4.0-3.fc37.x86_64
cracklib-2.9.7-30.fc38.x86_64
rpm-build-libs-4.18.0-0.beta1.4.fc37.x86_64
fedora-release-identity-basic-38-0.3.noarch
ghc-srpm-macros-1.5.0-7.fc37.noarch
basesystem-11-14.fc37.noarch
readline-8.1-7.fc37.x86_64
sqlite-libs-3.39.2-2.fc37.x86_64
cyrus-sasl-lib-2.1.28-8.fc38.x86_64
libsemanage-3.4-5.fc37.x86_64
file-libs-5.42-4.fc38.x86_64
which-2.21-35.fc37.x86_64
pam-libs-1.5.2-14.fc37.x86_64
libeconf-0.4.0-4.fc37.x86_64
libunistring-1.0-2.fc37.x86_64
glibc-minimal-langpack-2.36.9000-4.fc38.x86_64
binutils-gold-2.39-2.fc38.x86_64
fonts-srpm-macros-2.0.5-9.fc38.noarch
krb5-libs-1.19.2-11.fc37.1.x86_64
patch-2.7.6-17.fc37.x86_64
bash-5.1.16-3.fc37.x86_64
libdb-5.3.28-53.fc37.x86_64
coreutils-9.1-7.fc38.x86_64
libselinux-3.4-5.fc37.x86_64
pcre-8.45-1.fc37.2.x86_64
openssl-libs-3.0.5-2.fc37.x86_64
libgomp-12.2.1-1.fc38.x86_64
gpg-pubkey-eb10b464-6202d9c6
cpio-2.13-13.fc37.x86_64
rpm-4.18.0-0.beta1.4.fc37.x86_64
fedora-repos-rawhide-38-0.3.noarch
rpm-build-4.18.0-0.beta1.4.fc37.x86_64
libxcrypt-4.4.28-3.fc38.x86_64
glibc-2.36.9000-4.fc38.x86_64
openldap-2.6.3-1.fc38.x86_64
zip-3.0-33.fc37.x86_64
gnat-srpm-macros-4-16.fc37.noarch
lua-libs-5.4.4-4.fc37.x86_64
libmount-2.38.1-2.fc38.x86_64
libcurl-7.84.0-3.fc38.x86_64
tzdata-2022c-1.fc38.noarch
pkgconf-pkg-config-1.8.0-3.fc37.x86_64
nim-srpm-macros-3-7.fc37.noarch
libpwquality-1.4.4-11.fc37.x86_64
package-notes-srpm-macros-0.5-4.fc38.noarch
libuuid-2.38.1-2.fc38.x86_64
xz-5.2.6-1.fc38.x86_64
publicsuffix-list-dafsa-20210518-5.fc37.noarch
efi-srpm-macros-5-6.fc37.noarch
ca-certificates-2022.2.54-5.fc37.noarch
libtasn1-4.18.0-3.fc37.x86_64
elfutils-debuginfod-client-0.187-8.fc38.x86_64
diffutils-3.8-3.fc37.x86_64
p11-kit-0.24.1-3.fc37.x86_64
ansible-srpm-macros-1-7.fc38.noarch
glibc-common-2.36.9000-4.fc38.x86_64
libzstd-1.5.2-3.fc37.x86_64
audit-libs-3.0.9-1.fc38.x86_64
shadow-utils-4.12.3-1.fc38.x86_64
libarchive-3.6.1-2.fc37.x86_64
keyutils-libs-1.6.1-5.fc37.x86_64
libsepol-3.4-3.fc37.x86_64
gzip-1.12-2.fc37.x86_64
p11-kit-trust-0.24.1-3.fc37.x86_64
elfutils-0.187-8.fc38.x86_64
zlib-1.2.12-5.fc38.x86_64
pcre2-syntax-10.40-1.fc37.1.noarch
lz4-libs-1.9.3-5.fc37.x86_64
libverto-0.3.2-4.fc37.x86_64
pkgconf-1.8.0-3.fc37.x86_64
libbrotli-1.0.9-9.fc38.x86_64
popt-1.19~rc1-4.fc38.x86_64
jansson-2.13.1-5.fc37.x86_64
fpc-srpm-macros-1.3-6.fc37.noarch
util-linux-core-2.38.1-2.fc38.x86_64
xxhash-libs-0.8.1-3.fc37.x86_64
gmp-6.2.1-3.fc37.x86_64
pam-1.5.2-14.fc37.x86_64
elfutils-libelf-0.187-8.fc38.x86_64
gdbm-libs-1.23-2.fc37.x86_64
elfutils-default-yama-scope-0.187-8.fc38.noarch
go-srpm-macros-3.1.0-4.fc37.noarch
ncurses-base-6.3-3.20220501.fc37.noarch
libacl-2.3.1-4.fc37.x86_64
openblas-srpm-macros-2-12.fc37.noarch
tar-1.34-3.fc36.x86_64
libblkid-2.38.1-2.fc38.x86_64
file-5.42-4.fc38.x86_64
debugedit-5.0-5.fc37.x86_64
filesystem-3.18-2.fc37.x86_64
libattr-2.5.1-5.fc37.x86_64
coreutils-common-9.1-7.fc38.x86_64
mpfr-4.1.0-10.fc37.x86_64
curl-7.84.0-3.fc38.x86_64
findutils-4.9.0-2.fc37.x86_64
pcre2-10.40-1.fc37.1.x86_64
libcap-2.48-5.fc37.x86_64
libsmartcols-2.38.1-2.fc38.x86_64
python-srpm-macros-3.11-4.fc37.noarch
libnghttp2-1.49.0-1.fc38.x86_64
authselect-libs-1.4.0-3.fc37.x86_64
libutempter-1.2.1-7.fc37.x86_64
fedora-repos-38-0.3.noarch
glibc-gconv-extra-2.36.9000-4.fc38.x86_64
libpsl-0.21.1-6.fc37.x86_64
libcap-ng-0.8.3-3.fc37.x86_64
libpkgconf-1.8.0-3.fc37.x86_64
libtirpc-1.3.3-0.fc37.x86_64
binutils-2.39-2.fc38.x86_64
dwz-0.14-7.fc37.x86_64
libnsl2-2.0.0-4.fc37.x86_64
rpm-libs-4.18.0-0.beta1.4.fc37.x86_64
libssh-config-0.9.6-5.fc37.noarch
unzip-6.0-58.fc37.x86_64
libidn2-2.3.3-2.fc37.x86_64
rpmautospec-rpm-macros-0.3.0-1.fc37.noarch
sed-4.8-11.fc37.x86_64
gdb-minimal-12.1-4.fc37.x86_64
libevent-2.1.12-7.fc37.x86_64
libgcc-12.2.1-1.fc38.x86_64
gawk-5.1.1-4.fc37.x86_64
kernel-srpm-macros-1.0-15.fc37.noarch
systemd-libs-251.4-53.fc38.x86_64
pkgconf-m4-1.8.0-3.fc37.noarch
qt5-srpm-macros-5.15.5-2.fc37.noarch
libssh-0.9.6-5.fc37.x86_64
ed-1.18-2.fc37.x86_64
bzip2-1.0.8-12.fc37.x86_64
ncurses-libs-6.3-3.20220501.fc37.x86_64
grep-3.7-4.fc37.x86_64
rust-srpm-macros-22-1.fc37.noarch
Start: buildsrpm
Start: rpmbuild -bs
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1658448000
Wrote: /builddir/build/SRPMS/pymol-2.5.0-5.fc38.src.rpm
Finish: rpmbuild -bs
INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-x86_64-1662040121.852928/root/var/log/dnf.rpm.log
/var/lib/mock/fedora-rawhide-x86_64-1662040121.852928/root/var/log/dnf.librepo.log
/var/lib/mock/fedora-rawhide-x86_64-1662040121.852928/root/var/log/dnf.log
Finish: buildsrpm
INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-6wgxj3n1/pymol/pymol.spec) Config(child) 0 minutes 58 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
Finish: run
Running (timeout=108000): unbuffer mock --rebuild /var/lib/copr-rpmbuild/results/pymol-2.5.0-5.fc38.src.rpm --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1662040121.852928 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
INFO: mock.py version 3.1 starting (python version = 3.10.4, NVR = mock-3.1-1.fc35)...
Start(bootstrap): init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish(bootstrap): init plugins
Start: init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish: init plugins
INFO: Signal handler active
Start: run
INFO: Start(/var/lib/copr-rpmbuild/results/pymol-2.5.0-5.fc38.src.rpm)  Config(fedora-rawhide-x86_64)
Start: clean chroot
Finish: clean chroot
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1662040121.852928/root.
INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1662040121.852928/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
INFO: enabled HW Info plugin
Mock Version: 3.1
INFO: Mock Version: 3.1
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1662040121.852928/root.
INFO: calling preinit hooks
INFO: enabled root cache
Start: unpacking root cache
Finish: unpacking root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
Mock Version: 3.1
INFO: Mock Version: 3.1
Start: dnf update
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Copr repository                                  48 kB/s | 3.0 kB     00:00    
Copr repository                                 9.5 MB/s | 1.8 MB     00:00    
fedora                                          363 kB/s |  16 kB     00:00    
Dependencies resolved.
Nothing to do.
Complete!
Finish: dnf update
Finish: chroot init
Start: build phase for pymol-2.5.0-5.fc38.src.rpm
Start: build setup for pymol-2.5.0-5.fc38.src.rpm
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1658448000
Wrote: /builddir/build/SRPMS/pymol-2.5.0-5.fc38.src.rpm
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Copr repository                                  45 kB/s | 3.0 kB     00:00    
fedora                                          367 kB/s |  16 kB     00:00    
Dependencies resolved.
========================================================================================
 Package                       Arch    Version                          Repo        Size
========================================================================================
Installing:
 catch-devel                   x86_64  2.13.8-3.fc37                    fedora     205 k
 desktop-file-utils            x86_64  0.26-7.fc37                      fedora      72 k
 freeglut-devel                x86_64  3.2.2-2.fc37                     fedora     949 k
 freetype-devel                x86_64  2.12.1-3.fc37                    fedora     895 k
 gcc-c++                       x86_64  12.2.1-1.fc38                    fedora      13 M
 glew-devel                    x86_64  2.2.0-3.fc37                     fedora     222 k
 glm-devel                     noarch  0.9.9.8-4.fc37                   fedora     302 k
 libappstream-glib             x86_64  0.8.1-1.fc38                     fedora     404 k
 libpng-devel                  x86_64  2:1.6.37-13.fc37                 fedora     290 k
 libxml2-devel                 x86_64  2.9.14-3.fc37                    fedora     888 k
 mesa-libGL-devel              x86_64  22.2.0~rc3-1.fc38                fedora      35 k
 mmtf-cpp-devel                x86_64  1.0.0-11.fc37                    fedora      27 k
 msgpack-devel                 x86_64  3.1.0-10.fc37                    fedora     428 k
 netcdf-devel                  x86_64  4.9.0-3.fc37                     fedora      99 k
 python3-devel                 x86_64  3.11.0~rc1-2.fc38                fedora     268 k
 python3-mmtf                  noarch  1.1.2-18.fc37                    fedora      77 k
 python3-numpy                 x86_64  1:1.22.0-7.fc38                  copr_base  7.1 M
 python3-qt5-devel             x86_64  5.15.6-7.fc37                    fedora     523 k
 python3-setuptools            noarch  65.3.0-1.fc38                    copr_base  1.5 M
 python3-simplejson            x86_64  3.17.6-4.fc37                    fedora     328 k
Installing dependencies:
 alsa-lib                      x86_64  1.2.7.2-2.fc37                   fedora     517 k
 annobin-docs                  noarch  10.81-1.fc38                     fedora      91 k
 annobin-plugin-gcc            x86_64  10.81-1.fc38                     fedora     882 k
 avahi-libs                    x86_64  0.8-17.fc37                      fedora      67 k
 blosc                         x86_64  1.21.1-3.fc37                    fedora      60 k
 bluez-libs                    x86_64  5.65-2.fc38                      fedora      84 k
 brotli                        x86_64  1.0.9-9.fc38                     copr_base  315 k
 brotli-devel                  x86_64  1.0.9-9.fc38                     copr_base   32 k
 bzip2-devel                   x86_64  1.0.8-12.fc37                    fedora     214 k
 cairo                         x86_64  1.17.6-2.fc37                    fedora     676 k
 cairo-gobject                 x86_64  1.17.6-2.fc37                    fedora      18 k
 cdparanoia-libs               x86_64  10.2-40.fc37                     fedora      54 k
 cmake                         x86_64  3.24.1-1.fc38                    fedora     6.6 M
 cmake-data                    noarch  3.24.1-1.fc38                    fedora     2.1 M
 cmake-filesystem              x86_64  3.24.1-1.fc38                    fedora      16 k
 cmake-rpm-macros              noarch  3.24.1-1.fc38                    fedora      16 k
 cpp                           x86_64  12.2.1-1.fc38                    fedora      11 M
 crypto-policies-scripts       noarch  20220824-2.git2187e9c.fc38       fedora     111 k
 cups-libs                     x86_64  1:2.4.2-4.fc38                   fedora     267 k
 dbus                          x86_64  1:1.14.0-5.fc38                  fedora     7.7 k
 dbus-broker                   x86_64  32-1.fc37                        fedora     175 k
 dbus-common                   noarch  1:1.14.0-5.fc38                  fedora      14 k
 dbus-libs                     x86_64  1:1.14.0-5.fc38                  fedora     156 k
 emacs-filesystem              noarch  1:28.1-3.fc37                    fedora     9.5 k
 expat                         x86_64  2.4.8-2.fc37                     fedora     110 k
 fdk-aac-free                  x86_64  2.0.0-9.fc37                     fedora     332 k
 flac-libs                     x86_64  1.3.4-2.fc37                     fedora     220 k
 flexiblas                     x86_64  3.2.1-2.fc37                     fedora      33 k
 flexiblas-netlib              x86_64  3.2.1-2.fc37                     fedora     3.1 M
 flexiblas-openblas-openmp     x86_64  3.2.1-2.fc37                     fedora      17 k
 fontconfig                    x86_64  2.14.0-2.fc37                    fedora     288 k
 fonts-filesystem              noarch  1:2.0.5-9.fc38                   fedora     7.8 k
 freeglut                      x86_64  3.2.2-2.fc37                     fedora     150 k
 freetype                      x86_64  2.12.1-3.fc37                    fedora     407 k
 fribidi                       x86_64  1.0.12-2.fc37                    fedora      89 k
 gc                            x86_64  8.0.6-4.fc37                     fedora     103 k
 gcc                           x86_64  12.2.1-1.fc38                    fedora      33 M
 gcc-gfortran                  x86_64  12.2.1-1.fc38                    fedora      12 M
 gcc-plugin-annobin            x86_64  12.2.1-1.fc38                    fedora      51 k
 gdk-pixbuf2                   x86_64  2.42.9-1.fc38                    fedora     485 k
 gl-manpages                   noarch  1.1-25.20190306.fc37             fedora     1.2 M
 glib-networking               x86_64  2.74~alpha-4.fc37                fedora     199 k
 glib2                         x86_64  2.73.3-2.fc38                    fedora     2.7 M
 glib2-devel                   x86_64  2.73.3-2.fc38                    fedora     574 k
 glibc-devel                   x86_64  2.36.9000-4.fc38                 fedora      30 k
 glibc-headers-x86             noarch  2.36.9000-4.fc38                 fedora     507 k
 glx-utils                     x86_64  8.4.0-14.20210504git0f9e7d9.fc37 fedora      41 k
 gnutls                        x86_64  3.7.7-1.fc37                     fedora     1.1 M
 google-noto-fonts-common      noarch  20201206^1.git0c78c8329-3.fc38   fedora      17 k
 google-noto-sans-vf-fonts     noarch  20201206^1.git0c78c8329-3.fc38   fedora     728 k
 graphene                      x86_64  1.10.6-4.fc37                    fedora      62 k
 graphite2                     x86_64  1.3.14-10.fc37                   fedora      95 k
 graphite2-devel               x86_64  1.3.14-10.fc37                   fedora      20 k
 groff-base                    x86_64  1.22.4-10.fc37                   fedora     1.1 M
 gsettings-desktop-schemas     x86_64  43~alpha-4.fc37                  fedora     726 k
 gsm                           x86_64  1.0.22-1.fc37                    fedora      35 k
 gssdp                         x86_64  1.4.0.1-3.fc37                   fedora      57 k
 gstreamer1                    x86_64  1.20.3-2.fc37                    fedora     1.4 M
 gstreamer1-plugins-bad-free   x86_64  1.20.3-2.fc37                    fedora     2.9 M
 gstreamer1-plugins-base       x86_64  1.20.3-2.fc37                    fedora     2.2 M
 guile22                       x86_64  2.2.7-6.fc37                     fedora     6.5 M
 gupnp                         x86_64  1.4.3-3.fc37                     fedora     105 k
 gupnp-igd                     x86_64  1.2.0-6.fc37                     fedora      34 k
 harfbuzz                      x86_64  5.1.0-2.fc37                     fedora     820 k
 harfbuzz-devel                x86_64  5.1.0-2.fc37                     fedora     392 k
 harfbuzz-icu                  x86_64  5.1.0-2.fc37                     fedora      16 k
 hdf-libs                      x86_64  4.2.15-11.fc37                   fedora     294 k
 hdf5                          x86_64  1.12.1-10.fc37                   fedora     2.3 M
 hdf5-devel                    x86_64  1.12.1-10.fc37                   fedora     1.3 M
 hwdata                        noarch  0.361-2.fc37                     fedora     1.5 M
 iso-codes                     noarch  4.11.0-1.fc37                    fedora     3.4 M
 json-glib                     x86_64  1.6.6-3.fc37                     fedora     162 k
 jsoncpp                       x86_64  1.9.5-3.fc37                     fedora      98 k
 kernel-headers                x86_64  6.0.0-0.rc3.git0.1.fc38          fedora     1.5 M
 langpacks-core-font-en        noarch  3.0-26.fc37                      fedora      10 k
 lcms2                         x86_64  2.13.1-2.fc37                    fedora     175 k
 libGLEW                       x86_64  2.2.0-3.fc37                     fedora     176 k
 libICE                        x86_64  1.0.10-9.fc37                    fedora      71 k
 libSM                         x86_64  1.2.3-11.fc37                    fedora      42 k
 libX11                        x86_64  1.8.1-2.fc38                     fedora     648 k
 libX11-common                 noarch  1.8.1-2.fc38                     fedora     182 k
 libX11-devel                  x86_64  1.8.1-2.fc38                     fedora     1.0 M
 libX11-xcb                    x86_64  1.8.1-2.fc38                     fedora      12 k
 libXau                        x86_64  1.0.10-1.fc38                    fedora      31 k
 libXau-devel                  x86_64  1.0.10-1.fc38                    fedora      13 k
 libXext                       x86_64  1.3.4-9.fc37                     fedora      39 k
 libXfixes                     x86_64  6.0.0-4.fc37                     fedora      19 k
 libXft                        x86_64  2.3.4-3.fc37                     fedora      62 k
 libXi                         x86_64  1.8-3.fc37                       fedora      39 k
 libXrender                    x86_64  0.9.10-17.fc37                   fedora      27 k
 libXv                         x86_64  1.0.11-17.fc37                   fedora      18 k
 libXxf86vm                    x86_64  1.1.4-19.fc37                    fedora      18 k
 libaec                        x86_64  1.0.6-3.fc37                     fedora      41 k
 libaec-devel                  x86_64  1.0.6-3.fc37                     fedora      12 k
 libasyncns                    x86_64  0.8-23.fc37                      fedora      30 k
 libb2                         x86_64  0.98.1-7.fc37                    fedora      25 k
 libblkid-devel                x86_64  2.38.1-2.fc38                    fedora      17 k
 libcurl-devel                 x86_64  7.84.0-3.fc38                    fedora     977 k
 libdatrie                     x86_64  0.2.13-4.fc37                    fedora      32 k
 libdrm                        x86_64  2.4.112-1.fc38                   fedora     157 k
 libdrm-devel                  x86_64  2.4.112-1.fc38                   fedora     159 k
 libdvdnav                     x86_64  6.1.1-4.fc37                     fedora      55 k
 libdvdread                    x86_64  6.1.3-2.fc37                     fedora      72 k
 libevdev                      x86_64  1.13.0-1.fc37                    fedora      44 k
 libffi-devel                  x86_64  3.4.2-9.fc37                     fedora      29 k
 libgfortran                   x86_64  12.2.1-1.fc38                    fedora     898 k
 libglvnd                      x86_64  1:1.5.0-1.fc38                   fedora     133 k
 libglvnd-core-devel           x86_64  1:1.5.0-1.fc38                   fedora      17 k
 libglvnd-devel                x86_64  1:1.5.0-1.fc38                   fedora     161 k
 libglvnd-egl                  x86_64  1:1.5.0-1.fc38                   fedora      35 k
 libglvnd-gles                 x86_64  1:1.5.0-1.fc38                   fedora      31 k
 libglvnd-glx                  x86_64  1:1.5.0-1.fc38                   fedora     140 k
 libglvnd-opengl               x86_64  1:1.5.0-1.fc38                   fedora      42 k
 libgudev                      x86_64  237-3.fc37                       fedora      35 k
 libicu                        x86_64  71.1-1.fc37                      fedora      10 M
 libicu-devel                  x86_64  71.1-1.fc37                      fedora     916 k
 libinput                      x86_64  1.21.0-3.fc38                    fedora     209 k
 libjpeg-turbo                 x86_64  2.1.4-1.fc38                     fedora     181 k
 libmount-devel                x86_64  2.38.1-2.fc38                    fedora      18 k
 libmpc                        x86_64  1.2.1-5.fc37                     fedora      61 k
 libnice                       x86_64  0.1.19-2.fc37                    fedora     195 k
 libogg                        x86_64  2:1.3.5-4.fc37                   fedora      33 k
 libpciaccess                  x86_64  0.16-7.fc37                      fedora      27 k
 libpciaccess-devel            x86_64  0.16-7.fc37                      fedora      12 k
 libpng                        x86_64  2:1.6.37-13.fc37                 fedora     119 k
 libproxy                      x86_64  0.4.18-3.fc37                    fedora      71 k
 libquadmath                   x86_64  12.2.1-1.fc38                    fedora     199 k
 libquadmath-devel             x86_64  12.2.1-1.fc38                    fedora      41 k
 librsvg2                      x86_64  2.54.5-1.fc38                    fedora     3.6 M
 libselinux-devel              x86_64  3.4-5.fc37                       fedora     148 k
 libsepol-devel                x86_64  3.4-3.fc37                       fedora      49 k
 libsndfile                    x86_64  1.1.0-3.fc37                     fedora     205 k
 libsoup                       x86_64  2.74.2-3.fc37                    fedora     402 k
 libsrtp                       x86_64  2.3.0-9.fc37                     fedora      57 k
 libstdc++-devel               x86_64  12.2.1-1.fc38                    fedora     2.5 M
 libstemmer                    x86_64  0-19.585svn.fc37                 fedora      79 k
 libthai                       x86_64  0.1.29-3.fc37                    fedora     213 k
 libtheora                     x86_64  1:1.1.1-32.fc37                  fedora     167 k
 libtool-ltdl                  x86_64  2.4.7-2.fc37                     fedora      37 k
 libunwind                     x86_64  1.6.2-3.fc37                     fedora      67 k
 libusb1                       x86_64  1.0.25-9.fc37                    fedora      74 k
 libuv                         x86_64  1:1.44.2-2.fc37                  fedora     151 k
 libva                         x86_64  2.15.0-2.fc37                    fedora     102 k
 libvisual                     x86_64  1:0.4.0-36.fc37                  fedora     142 k
 libvorbis                     x86_64  1:1.3.7-6.fc37                   fedora     195 k
 libwacom                      x86_64  2.4.0-1.fc37                     fedora      42 k
 libwacom-data                 noarch  2.4.0-1.fc37                     fedora     180 k
 libwayland-client             x86_64  1.21.0-1.fc37                    fedora      33 k
 libwayland-cursor             x86_64  1.21.0-1.fc37                    fedora      19 k
 libwayland-egl                x86_64  1.21.0-1.fc37                    fedora      13 k
 libwayland-server             x86_64  1.21.0-1.fc37                    fedora      41 k
 libwebp                       x86_64  1.2.4-1.fc37                     fedora     278 k
 libxcb                        x86_64  1.13.1-10.fc37                   fedora     231 k
 libxcb-devel                  x86_64  1.13.1-10.fc37                   fedora     1.4 M
 libxcrypt-devel               x86_64  4.4.28-3.fc38                    fedora      28 k
 libxkbcommon                  x86_64  1.4.1-2.fc37                     fedora     140 k
 libxkbcommon-x11              x86_64  1.4.1-2.fc37                     fedora      22 k
 libxshmfence                  x86_64  1.3-11.fc37                      fedora      12 k
 lilv-libs                     x86_64  0.24.14-3.fc37                   fedora      58 k
 make                          x86_64  1:4.3-11.fc37                    fedora     542 k
 mesa-filesystem               x86_64  22.2.0~rc3-1.fc38                fedora      18 k
 mesa-libEGL                   x86_64  22.2.0~rc3-1.fc38                fedora     125 k
 mesa-libEGL-devel             x86_64  22.2.0~rc3-1.fc38                fedora      19 k
 mesa-libGL                    x86_64  22.2.0~rc3-1.fc38                fedora     176 k
 mesa-libGLU                   x86_64  9.0.1-7.fc37                     fedora     153 k
 mesa-libGLU-devel             x86_64  9.0.1-7.fc37                     fedora      13 k
 mesa-libgbm                   x86_64  22.2.0~rc3-1.fc38                fedora      45 k
 mesa-libglapi                 x86_64  22.2.0~rc3-1.fc38                fedora      54 k
 mpdecimal                     x86_64  2.5.1-4.fc37                     fedora     102 k
 msgpack                       x86_64  3.1.0-10.fc37                    fedora      30 k
 mtdev                         x86_64  1.1.6-4.fc37                     fedora      20 k
 ncurses                       x86_64  6.3-3.20220501.fc37              fedora     409 k
 netcdf                        x86_64  4.9.0-3.fc37                     fedora     828 k
 nettle                        x86_64  3.8-2.fc37                       fedora     414 k
 nspr                          x86_64  4.34.0-3.fc37                    fedora     137 k
 nss                           x86_64  3.81.0-1.fc37                    fedora     694 k
 nss-softokn                   x86_64  3.81.0-1.fc37                    fedora     384 k
 nss-softokn-freebl            x86_64  3.81.0-1.fc37                    fedora     326 k
 nss-sysinit                   x86_64  3.81.0-1.fc37                    fedora      20 k
 nss-util                      x86_64  3.81.0-1.fc37                    fedora      87 k
 openal-soft                   x86_64  1.22.2-2.fc37                    fedora     449 k
 openblas                      x86_64  0.3.21-3.fc38                    fedora      35 k
 openblas-openmp               x86_64  0.3.21-3.fc38                    fedora     5.1 M
 opus                          x86_64  1.3.1-11.fc37                    fedora     204 k
 orc                           x86_64  0.4.31-8.fc37                    fedora     183 k
 pango                         x86_64  1.50.9-1.fc38                    fedora     342 k
 pcre2-devel                   x86_64  10.40-1.fc37.1                   fedora     505 k
 pcre2-utf16                   x86_64  10.40-1.fc37.1                   fedora     216 k
 pcre2-utf32                   x86_64  10.40-1.fc37.1                   fedora     203 k
 perl-Carp                     noarch  1.52-489.fc37                    fedora      29 k
 perl-Class-Struct             noarch  0.66-492.fc38                    fedora      25 k
 perl-DynaLoader               x86_64  1.52-492.fc38                    fedora      29 k
 perl-Encode                   x86_64  4:3.19-492.fc38                  fedora     1.7 M
 perl-English                  noarch  1.11-492.fc38                    fedora      17 k
 perl-Errno                    x86_64  1.36-492.fc38                    fedora      18 k
 perl-Exporter                 noarch  5.77-489.fc37                    fedora      31 k
 perl-Fcntl                    x86_64  1.15-492.fc38                    fedora      24 k
 perl-File-Basename            noarch  2.85-492.fc38                    fedora      20 k
 perl-File-Find                noarch  1.40-492.fc38                    fedora      28 k
 perl-File-Path                noarch  2.18-489.fc37                    fedora      35 k
 perl-File-Temp                noarch  1:0.231.100-489.fc37             fedora      59 k
 perl-File-stat                noarch  1.12-492.fc38                    fedora      20 k
 perl-Getopt-Long              noarch  1:2.52-489.fc37                  fedora      60 k
 perl-Getopt-Std               noarch  1.13-492.fc38                    fedora      19 k
 perl-HTTP-Tiny                noarch  0.082-1.fc37                     fedora      55 k
 perl-IO                       x86_64  1.50-492.fc38                    fedora      95 k
 perl-IPC-Open3                noarch  1.22-492.fc38                    fedora      26 k
 perl-MIME-Base64              x86_64  3.16-489.fc37                    fedora      30 k
 perl-POSIX                    x86_64  2.03-492.fc38                    fedora     101 k
 perl-PathTools                x86_64  3.84-489.fc37                    fedora      89 k
 perl-Pod-Escapes              noarch  1:1.07-489.fc37                  fedora      20 k
 perl-Pod-Perldoc              noarch  3.28.01-490.fc37                 fedora      90 k
 perl-Pod-Simple               noarch  1:3.43-490.fc37                  fedora     225 k
 perl-Pod-Usage                noarch  4:2.03-3.fc37                    fedora      40 k
 perl-Scalar-List-Utils        x86_64  5:1.63-489.fc38                  fedora      72 k
 perl-SelectSaver              noarch  1.02-492.fc38                    fedora      15 k
 perl-Socket                   x86_64  4:2.036-1.fc38                   fedora      55 k
 perl-Storable                 x86_64  1:3.26-489.fc37                  fedora      97 k
 perl-Symbol                   noarch  1.09-492.fc38                    fedora      17 k
 perl-Term-ANSIColor           noarch  5.01-490.fc37                    fedora      48 k
 perl-Term-Cap                 noarch  1.17-489.fc37                    fedora      22 k
 perl-Text-ParseWords          noarch  3.31-489.fc37                    fedora      16 k
 perl-Text-Tabs+Wrap           noarch  2021.0814-489.fc37               fedora      22 k
 perl-Time-Local               noarch  2:1.300-489.fc37                 fedora      33 k
 perl-constant                 noarch  1.33-490.fc37                    fedora      23 k
 perl-if                       noarch  0.61.000-492.fc38                fedora      17 k
 perl-interpreter              x86_64  4:5.36.0-492.fc38                fedora      75 k
 perl-libs                     x86_64  4:5.36.0-492.fc38                fedora     2.2 M
 perl-mro                      x86_64  1.26-492.fc38                    fedora      32 k
 perl-overload                 noarch  1.35-492.fc38                    fedora      49 k
 perl-overloading              noarch  0.02-492.fc38                    fedora      16 k
 perl-parent                   noarch  1:0.238-489.fc37                 fedora      14 k
 perl-podlators                noarch  1:4.14-489.fc37                  fedora     116 k
 perl-subs                     noarch  1.04-492.fc38                    fedora      15 k
 perl-vars                     noarch  1.05-492.fc38                    fedora      16 k
 pixman                        x86_64  0.40.0-6.fc37                    fedora     277 k
 pulseaudio-libs               x86_64  16.1-1.fc37                      fedora     686 k
 pyproject-rpm-macros          noarch  1.3.3-1.fc38                     fedora      41 k
 python-pip-wheel              noarch  22.2.2-1.fc38                    fedora     1.4 M
 python-qt5-rpm-macros         noarch  5.15.6-7.fc37                    fedora     9.4 k
 python-rpm-macros             noarch  3.11-4.fc37                      fedora      18 k
 python-setuptools-wheel       noarch  65.3.0-1.fc38                    copr_base  715 k
 python3                       x86_64  3.11.0~rc1-2.fc38                fedora      27 k
 python3-dbus                  x86_64  1.2.18-5.fc37                    fedora     156 k
 python3-libs                  x86_64  3.11.0~rc1-2.fc38                fedora     9.6 M
 python3-msgpack               x86_64  1.0.4-3.fc37                     fedora      96 k
 python3-packaging             noarch  21.3-7.fc38                      fedora      98 k
 python3-pyparsing             noarch  3.0.9-2.fc37                     fedora     262 k
 python3-pyqt5-sip             x86_64  12.11.0-2.fc37                   fedora      70 k
 python3-qt5                   x86_64  5.15.6-7.fc37                    fedora     1.2 M
 python3-qt5-base              x86_64  5.15.6-7.fc37                    fedora     3.3 M
 python3-rpm-generators        noarch  13-2.fc37                        fedora      30 k
 python3-rpm-macros            noarch  3.11-4.fc37                      fedora      15 k
 qt-settings                   noarch  37.0-1.fc38                      fedora      11 k
 qt5-qtbase                    x86_64  5.15.5-4.fc38                    fedora     3.6 M
 qt5-qtbase-common             noarch  5.15.5-4.fc38                    fedora      12 k
 qt5-qtbase-devel              x86_64  5.15.5-4.fc38                    fedora     3.5 M
 qt5-qtbase-gui                x86_64  5.15.5-4.fc38                    fedora     6.4 M
 qt5-qtconnectivity            x86_64  5.15.5-2.fc37                    fedora     465 k
 qt5-qtdeclarative             x86_64  5.15.5-2.fc37                    fedora     4.2 M
 qt5-qtlocation                x86_64  5.15.5-3.fc37                    fedora     3.0 M
 qt5-qtmultimedia              x86_64  5.15.5-2.fc37                    fedora     812 k
 qt5-qtsensors                 x86_64  5.15.5-2.fc37                    fedora     227 k
 qt5-qtserialport              x86_64  5.15.5-2.fc37                    fedora      65 k
 qt5-qtsvg                     x86_64  5.15.5-2.fc37                    fedora     186 k
 qt5-qttools-common            noarch  5.15.5-2.fc37                    fedora      11 k
 qt5-qttools-libs-designer     x86_64  5.15.5-2.fc37                    fedora     2.7 M
 qt5-qttools-libs-help         x86_64  5.15.5-2.fc37                    fedora     157 k
 qt5-qtwebchannel              x86_64  5.15.5-2.fc37                    fedora     100 k
 qt5-qtwebsockets              x86_64  5.15.5-2.fc37                    fedora      87 k
 qt5-qtx11extras               x86_64  5.15.5-2.fc37                    fedora      35 k
 qt5-qtxmlpatterns             x86_64  5.15.5-2.fc37                    fedora     997 k
 qt5-rpm-macros                noarch  5.15.5-2.fc37                    fedora     9.8 k
 rhash                         x86_64  1.4.2-3.fc37                     fedora     185 k
 serd                          x86_64  0.30.12-2.fc37                   fedora      61 k
 shared-mime-info              x86_64  2.2-2.fc37                       fedora     381 k
 snappy                        x86_64  1.1.9-5.fc37                     fedora      36 k
 sord                          x86_64  0.16.10-1.fc37                   fedora      46 k
 soundtouch                    x86_64  2.3.1-3.fc37                     fedora      94 k
 sratom                        x86_64  0.6.10-2.fc37                    fedora      26 k
 sysprof-capture-devel         x86_64  3.45.1-1.fc37                    fedora      58 k
 valgrind                      x86_64  1:3.19.0-4.fc37                  fedora     4.8 M
 valgrind-devel                x86_64  1:3.19.0-4.fc37                  fedora      49 k
 vim-filesystem                noarch  2:9.0.327-1.fc38                 fedora      20 k
 vulkan-headers                noarch  1.3.224.0-1.fc38                 fedora     942 k
 vulkan-loader                 x86_64  1.3.224.0-1.fc38                 fedora     141 k
 vulkan-loader-devel           x86_64  1.3.224.0-1.fc38                 fedora     9.1 k
 webrtc-audio-processing       x86_64  0.3.1-9.fc37                     fedora     304 k
 xcb-util                      x86_64  0.4.0-20.fc37                    fedora      18 k
 xcb-util-image                x86_64  0.4.0-20.fc37                    fedora      19 k
 xcb-util-keysyms              x86_64  0.4.0-18.fc37                    fedora      14 k
 xcb-util-renderutil           x86_64  0.3.9-21.fc37                    fedora      17 k
 xcb-util-wm                   x86_64  0.4.1-23.fc37                    fedora      31 k
 xkeyboard-config              noarch  2.36-2.fc37                      fedora     957 k
 xml-common                    noarch  0.6.3-59.fc37                    fedora      31 k
 xorg-x11-proto-devel          noarch  2022.2-2.fc38                    fedora     299 k
 xz-devel                      x86_64  5.2.6-1.fc38                     fedora      57 k
 zlib-devel                    x86_64  1.2.12-5.fc38                    fedora      44 k

Transaction Summary
========================================================================================
Install  318 Packages

Total size: 234 M
Total download size: 165 M
Installed size: 889 M
Downloading Packages:
[SKIPPED] python-setuptools-wheel-65.3.0-1.fc38.noarch.rpm: Already downloaded 
[SKIPPED] python3-setuptools-65.3.0-1.fc38.noarch.rpm: Already downloaded      
[SKIPPED] annobin-docs-10.81-1.fc38.noarch.rpm: Already downloaded             
[SKIPPED] annobin-plugin-gcc-10.81-1.fc38.x86_64.rpm: Already downloaded       
[SKIPPED] cpp-12.2.1-1.fc38.x86_64.rpm: Already downloaded                     
[SKIPPED] expat-2.4.8-2.fc37.x86_64.rpm: Already downloaded                    
[SKIPPED] fonts-filesystem-2.0.5-9.fc38.noarch.rpm: Already downloaded         
[SKIPPED] gc-8.0.6-4.fc37.x86_64.rpm: Already downloaded                       
[SKIPPED] gcc-12.2.1-1.fc38.x86_64.rpm: Already downloaded                     
[SKIPPED] gcc-plugin-annobin-12.2.1-1.fc38.x86_64.rpm: Already downloaded      
[SKIPPED] glibc-devel-2.36.9000-4.fc38.x86_64.rpm: Already downloaded          
[SKIPPED] glibc-headers-x86-2.36.9000-4.fc38.noarch.rpm: Already downloaded    
[SKIPPED] guile22-2.2.7-6.fc37.x86_64.rpm: Already downloaded                  
[SKIPPED] kernel-headers-6.0.0-0.rc3.git0.1.fc38.x86_64.rpm: Already downloaded
[SKIPPED] libb2-0.98.1-7.fc37.x86_64.rpm: Already downloaded                   
[SKIPPED] libmpc-1.2.1-5.fc37.x86_64.rpm: Already downloaded                   
[SKIPPED] libtool-ltdl-2.4.7-2.fc37.x86_64.rpm: Already downloaded             
[SKIPPED] libxcrypt-devel-4.4.28-3.fc38.x86_64.rpm: Already downloaded         
[SKIPPED] make-4.3-11.fc37.x86_64.rpm: Already downloaded                      
[SKIPPED] mpdecimal-2.5.1-4.fc37.x86_64.rpm: Already downloaded                
[SKIPPED] pyproject-rpm-macros-1.3.3-1.fc38.noarch.rpm: Already downloaded     
[SKIPPED] python-pip-wheel-22.2.2-1.fc38.noarch.rpm: Already downloaded        
[SKIPPED] python-rpm-macros-3.11-4.fc37.noarch.rpm: Already downloaded         
[SKIPPED] python3-3.11.0~rc1-2.fc38.x86_64.rpm: Already downloaded             
[SKIPPED] python3-devel-3.11.0~rc1-2.fc38.x86_64.rpm: Already downloaded       
[SKIPPED] python3-libs-3.11.0~rc1-2.fc38.x86_64.rpm: Already downloaded        
[SKIPPED] python3-packaging-21.3-7.fc38.noarch.rpm: Already downloaded         
[SKIPPED] python3-pyparsing-3.0.9-2.fc37.noarch.rpm: Already downloaded        
[SKIPPED] python3-rpm-generators-13-2.fc37.noarch.rpm: Already downloaded      
[SKIPPED] python3-rpm-macros-3.11-4.fc37.noarch.rpm: Already downloaded        
(31/318): brotli-devel-1.0.9-9.fc38.x86_64.rpm  340 kB/s |  32 kB     00:00    
(32/318): brotli-1.0.9-9.fc38.x86_64.rpm        2.3 MB/s | 315 kB     00:00    
(33/318): avahi-libs-0.8-17.fc37.x86_64.rpm     448 kB/s |  67 kB     00:00    
(34/318): python3-numpy-1.22.0-7.fc38.x86_64.rp  19 MB/s | 7.1 MB     00:00    
[MIRROR] bluez-libs-5.65-2.fc38.x86_64.rpm: Status code: 404 for http://forksystems.mm.fcix.net/fedora/linux/development/rawhide/Everything/x86_64/os/Packages/b/bluez-libs-5.65-2.fc38.x86_64.rpm (IP: 2620:39:6000:103::2)
[MIRROR] bluez-libs-5.65-2.fc38.x86_64.rpm: Status code: 404 for https://forksystems.mm.fcix.net/fedora/linux/development/rawhide/Everything/x86_64/os/Packages/b/bluez-libs-5.65-2.fc38.x86_64.rpm (IP: 2620:39:6000:103::2)
(35/318): alsa-lib-1.2.7.2-2.fc37.x86_64.rpm    1.1 MB/s | 517 kB     00:00    
(36/318): blosc-1.21.1-3.fc37.x86_64.rpm        214 kB/s |  60 kB     00:00    
(37/318): bzip2-devel-1.0.8-12.fc37.x86_64.rpm  6.7 MB/s | 214 kB     00:00    
(38/318): cairo-gobject-1.17.6-2.fc37.x86_64.rp 863 kB/s |  18 kB     00:00    
(39/318): cairo-1.17.6-2.fc37.x86_64.rpm        7.0 MB/s | 676 kB     00:00    
[MIRROR] bluez-libs-5.65-2.fc38.x86_64.rpm: Status code: 404 for http://mirror.fcix.net/fedora/linux/development/rawhide/Everything/x86_64/os/Packages/b/bluez-libs-5.65-2.fc38.x86_64.rpm (IP: 2620:13b:0:1000::16)
(40/318): cdparanoia-libs-10.2-40.fc37.x86_64.r 473 kB/s |  54 kB     00:00    
(41/318): catch-devel-2.13.8-3.fc37.x86_64.rpm  1.1 MB/s | 205 kB     00:00    
(42/318): cmake-data-3.24.1-1.fc38.noarch.rpm    16 MB/s | 2.1 MB     00:00    
[MIRROR] bluez-libs-5.65-2.fc38.x86_64.rpm: Status code: 404 for https://mirror.fcix.net/fedora/linux/development/rawhide/Everything/x86_64/os/Packages/b/bluez-libs-5.65-2.fc38.x86_64.rpm (IP: 2620:13b:0:1000::16)
(43/318): cmake-3.24.1-1.fc38.x86_64.rpm         39 MB/s | 6.6 MB     00:00    
(44/318): cmake-filesystem-3.24.1-1.fc38.x86_64 665 kB/s |  16 kB     00:00    
(45/318): cmake-rpm-macros-3.24.1-1.fc38.noarch 748 kB/s |  16 kB     00:00    
(46/318): crypto-policies-scripts-20220824-2.gi 4.9 MB/s | 111 kB     00:00    
(47/318): cups-libs-2.4.2-4.fc38.x86_64.rpm      11 MB/s | 267 kB     00:00    
(48/318): dbus-1.14.0-5.fc38.x86_64.rpm         344 kB/s | 7.7 kB     00:00    
(49/318): dbus-common-1.14.0-5.fc38.noarch.rpm  630 kB/s |  14 kB     00:00    
(50/318): dbus-broker-32-1.fc37.x86_64.rpm      6.9 MB/s | 175 kB     00:00    
(51/318): dbus-libs-1.14.0-5.fc38.x86_64.rpm    6.8 MB/s | 156 kB     00:00    
(52/318): bluez-libs-5.65-2.fc38.x86_64.rpm     126 kB/s |  84 kB     00:00    
(53/318): emacs-filesystem-28.1-3.fc37.noarch.r 9.4 kB/s | 9.5 kB     00:01    
(54/318): desktop-file-utils-0.26-7.fc37.x86_64  69 kB/s |  72 kB     00:01    
(55/318): flac-libs-1.3.4-2.fc37.x86_64.rpm     214 kB/s | 220 kB     00:01    
(56/318): flexiblas-3.2.1-2.fc37.x86_64.rpm      31 kB/s |  33 kB     00:01    
(57/318): flexiblas-openblas-openmp-3.2.1-2.fc3 187 kB/s |  17 kB     00:00    
(58/318): flexiblas-netlib-3.2.1-2.fc37.x86_64.  19 MB/s | 3.1 MB     00:00    
(59/318): fontconfig-2.14.0-2.fc37.x86_64.rpm    47 kB/s | 288 kB     00:06    
(60/318): freeglut-3.2.2-2.fc37.x86_64.rpm       25 kB/s | 150 kB     00:06    
(61/318): freetype-2.12.1-3.fc37.x86_64.rpm     365 kB/s | 407 kB     00:01    
(62/318): fdk-aac-free-2.0.0-9.fc37.x86_64.rpm   35 kB/s | 332 kB     00:09    
(63/318): freeglut-devel-3.2.2-2.fc37.x86_64.rp 777 kB/s | 949 kB     00:01    
(64/318): freetype-devel-2.12.1-3.fc37.x86_64.r 2.2 MB/s | 895 kB     00:00    
(65/318): gcc-c++-12.2.1-1.fc38.x86_64.rpm       18 MB/s |  13 MB     00:00    
(66/318): gcc-gfortran-12.2.1-1.fc38.x86_64.rpm 8.0 MB/s |  12 MB     00:01    
(67/318): gl-manpages-1.1-25.20190306.fc37.noar  27 MB/s | 1.2 MB     00:00    
(68/318): glew-devel-2.2.0-3.fc37.x86_64.rpm    590 kB/s | 222 kB     00:00    
(69/318): gdk-pixbuf2-2.42.9-1.fc38.x86_64.rpm  300 kB/s | 485 kB     00:01    
(70/318): glib-networking-2.74~alpha-4.fc37.x86 1.1 MB/s | 199 kB     00:00    
(71/318): glib2-2.73.3-2.fc38.x86_64.rpm         38 MB/s | 2.7 MB     00:00    
(72/318): fribidi-1.0.12-2.fc37.x86_64.rpm       36 kB/s |  89 kB     00:02    
(73/318): glib2-devel-2.73.3-2.fc38.x86_64.rpm  4.5 MB/s | 574 kB     00:00    
(74/318): glm-devel-0.9.9.8-4.fc37.noarch.rpm   2.3 MB/s | 302 kB     00:00    
(75/318): gnutls-3.7.7-1.fc37.x86_64.rpm         32 MB/s | 1.1 MB     00:00    
[MIRROR] google-noto-fonts-common-20201206^1.git0c78c8329-3.fc38.noarch.rpm: Status code: 404 for http://forksystems.mm.fcix.net/fedora/linux/development/rawhide/Everything/x86_64/os/Packages/g/google-noto-fonts-common-20201206%5e1.git0c78c8329-3.fc38.noarch.rpm (IP: 2620:39:6000:103::2)
[MIRROR] google-noto-sans-vf-fonts-20201206^1.git0c78c8329-3.fc38.noarch.rpm: Status code: 404 for http://forksystems.mm.fcix.net/fedora/linux/development/rawhide/Everything/x86_64/os/Packages/g/google-noto-sans-vf-fonts-20201206%5e1.git0c78c8329-3.fc38.noarch.rpm (IP: 2620:39:6000:103::2)
[MIRROR] google-noto-fonts-common-20201206^1.git0c78c8329-3.fc38.noarch.rpm: Status code: 404 for https://forksystems.mm.fcix.net/fedora/linux/development/rawhide/Everything/x86_64/os/Packages/g/google-noto-fonts-common-20201206%5e1.git0c78c8329-3.fc38.noarch.rpm (IP: 2620:39:6000:103::2)
[MIRROR] google-noto-sans-vf-fonts-20201206^1.git0c78c8329-3.fc38.noarch.rpm: Status code: 404 for https://forksystems.mm.fcix.net/fedora/linux/development/rawhide/Everything/x86_64/os/Packages/g/google-noto-sans-vf-fonts-20201206%5e1.git0c78c8329-3.fc38.noarch.rpm (IP: 2620:39:6000:103::2)
[MIRROR] google-noto-fonts-common-20201206^1.git0c78c8329-3.fc38.noarch.rpm: Status code: 404 for http://mirror.fcix.net/fedora/linux/development/rawhide/Everything/x86_64/os/Packages/g/google-noto-fonts-common-20201206%5e1.git0c78c8329-3.fc38.noarch.rpm (IP: 2620:13b:0:1000::16)
[MIRROR] google-noto-sans-vf-fonts-20201206^1.git0c78c8329-3.fc38.noarch.rpm: Status code: 404 for http://mirror.fcix.net/fedora/linux/development/rawhide/Everything/x86_64/os/Packages/g/google-noto-sans-vf-fonts-20201206%5e1.git0c78c8329-3.fc38.noarch.rpm (IP: 2620:13b:0:1000::16)
[MIRROR] google-noto-fonts-common-20201206^1.git0c78c8329-3.fc38.noarch.rpm: Status code: 404 for https://mirror.fcix.net/fedora/linux/development/rawhide/Everything/x86_64/os/Packages/g/google-noto-fonts-common-20201206%5e1.git0c78c8329-3.fc38.noarch.rpm (IP: 2620:13b:0:1000::16)
[MIRROR] google-noto-sans-vf-fonts-20201206^1.git0c78c8329-3.fc38.noarch.rpm: Status code: 404 for https://mirror.fcix.net/fedora/linux/development/rawhide/Everything/x86_64/os/Packages/g/google-noto-sans-vf-fonts-20201206%5e1.git0c78c8329-3.fc38.noarch.rpm (IP: 2620:13b:0:1000::16)
(76/318): google-noto-fonts-common-20201206^1.g  27 kB/s |  17 kB     00:00    
(77/318): glx-utils-8.4.0-14.20210504git0f9e7d9  39 kB/s |  41 kB     00:01    
(78/318): google-noto-sans-vf-fonts-20201206^1. 657 kB/s | 728 kB     00:01    
(79/318): graphite2-devel-1.3.14-10.fc37.x86_64  64 kB/s |  20 kB     00:00    
(80/318): graphite2-1.3.14-10.fc37.x86_64.rpm   192 kB/s |  95 kB     00:00    
(81/318): graphene-1.10.6-4.fc37.x86_64.rpm      75 kB/s |  62 kB     00:00    
(82/318): gsettings-desktop-schemas-43~alpha-4. 9.2 MB/s | 726 kB     00:00    
(83/318): groff-base-1.22.4-10.fc37.x86_64.rpm   10 MB/s | 1.1 MB     00:00    
(84/318): gsm-1.0.22-1.fc37.x86_64.rpm          219 kB/s |  35 kB     00:00    
(85/318): gssdp-1.4.0.1-3.fc37.x86_64.rpm       445 kB/s |  57 kB     00:00    
(86/318): gstreamer1-1.20.3-2.fc37.x86_64.rpm    10 MB/s | 1.4 MB     00:00    
(87/318): gupnp-1.4.3-3.fc37.x86_64.rpm         1.8 MB/s | 105 kB     00:00    
(88/318): gstreamer1-plugins-base-1.20.3-2.fc37  18 MB/s | 2.2 MB     00:00    
(89/318): gstreamer1-plugins-bad-free-1.20.3-2.  20 MB/s | 2.9 MB     00:00    
(90/318): gupnp-igd-1.2.0-6.fc37.x86_64.rpm     665 kB/s |  34 kB     00:00    
(91/318): harfbuzz-devel-5.1.0-2.fc37.x86_64.rp  11 MB/s | 392 kB     00:00    
(92/318): harfbuzz-icu-5.1.0-2.fc37.x86_64.rpm  343 kB/s |  16 kB     00:00    
(93/318): harfbuzz-5.1.0-2.fc37.x86_64.rpm       11 MB/s | 820 kB     00:00    
(94/318): hdf-libs-4.2.15-11.fc37.x86_64.rpm    4.7 MB/s | 294 kB     00:00    
(95/318): hdf5-1.12.1-10.fc37.x86_64.rpm         14 MB/s | 2.3 MB     00:00    
(96/318): hwdata-0.361-2.fc37.noarch.rpm         13 MB/s | 1.5 MB     00:00    
(97/318): hdf5-devel-1.12.1-10.fc37.x86_64.rpm  8.0 MB/s | 1.3 MB     00:00    
(98/318): jsoncpp-1.9.5-3.fc37.x86_64.rpm       1.2 MB/s |  98 kB     00:00    
(99/318): iso-codes-4.11.0-1.fc37.noarch.rpm     19 MB/s | 3.4 MB     00:00    
(100/318): langpacks-core-font-en-3.0-26.fc37.n 3.9 kB/s |  10 kB     00:02    
(101/318): lcms2-2.13.1-2.fc37.x86_64.rpm        70 kB/s | 175 kB     00:02    
(102/318): libICE-1.0.10-9.fc37.x86_64.rpm       59 kB/s |  71 kB     00:01    
(103/318): libGLEW-2.2.0-3.fc37.x86_64.rpm      140 kB/s | 176 kB     00:01    
(104/318): libSM-1.2.3-11.fc37.x86_64.rpm        59 kB/s |  42 kB     00:00    
(105/318): libX11-1.8.1-2.fc38.x86_64.rpm       911 kB/s | 648 kB     00:00    
(106/318): json-glib-1.6.6-3.fc37.x86_64.rpm     31 kB/s | 162 kB     00:05    
(107/318): libX11-common-1.8.1-2.fc38.noarch.rp 224 kB/s | 182 kB     00:00    
(108/318): libX11-xcb-1.8.1-2.fc38.x86_64.rpm    63 kB/s |  12 kB     00:00    
(109/318): libX11-devel-1.8.1-2.fc38.x86_64.rpm 1.2 MB/s | 1.0 MB     00:00    
(110/318): libXau-1.0.10-1.fc38.x86_64.rpm      112 kB/s |  31 kB     00:00    
(111/318): libXext-1.3.4-9.fc37.x86_64.rpm      195 kB/s |  39 kB     00:00    
(112/318): libXau-devel-1.0.10-1.fc38.x86_64.rp  56 kB/s |  13 kB     00:00    
(113/318): libXfixes-6.0.0-4.fc37.x86_64.rpm    109 kB/s |  19 kB     00:00    
(114/318): libXft-2.3.4-3.fc37.x86_64.rpm       357 kB/s |  62 kB     00:00    
(115/318): libXi-1.8-3.fc37.x86_64.rpm          210 kB/s |  39 kB     00:00    
(116/318): libXrender-0.9.10-17.fc37.x86_64.rpm  18 kB/s |  27 kB     00:01    
(117/318): libXv-1.0.11-17.fc37.x86_64.rpm       13 kB/s |  18 kB     00:01    
(118/318): libaec-1.0.6-3.fc37.x86_64.rpm       1.1 MB/s |  41 kB     00:00    
(119/318): libaec-devel-1.0.6-3.fc37.x86_64.rpm 4.5 kB/s |  12 kB     00:02    
(120/318): libappstream-glib-0.8.1-1.fc38.x86_6  81 kB/s | 404 kB     00:04    
(121/318): libasyncns-0.8-23.fc37.x86_64.rpm     13 kB/s |  30 kB     00:02    
(122/318): libblkid-devel-2.38.1-2.fc38.x86_64.  25 kB/s |  17 kB     00:00    
(123/318): libXxf86vm-1.1.4-19.fc37.x86_64.rpm  2.5 kB/s |  18 kB     00:07    
(124/318): libdatrie-0.2.13-4.fc37.x86_64.rpm    14 kB/s |  32 kB     00:02    
(125/318): libdrm-2.4.112-1.fc38.x86_64.rpm      62 kB/s | 157 kB     00:02    
(126/318): libdvdnav-6.1.1-4.fc37.x86_64.rpm     34 kB/s |  55 kB     00:01    
(127/318): libdrm-devel-2.4.112-1.fc38.x86_64.r  82 kB/s | 159 kB     00:01    
(128/318): libevdev-1.13.0-1.fc37.x86_64.rpm     15 kB/s |  44 kB     00:02    
(129/318): libdvdread-6.1.3-2.fc37.x86_64.rpm    25 kB/s |  72 kB     00:02    
(130/318): libgfortran-12.2.1-1.fc38.x86_64.rpm 5.2 MB/s | 898 kB     00:00    
(131/318): libffi-devel-3.4.2-9.fc37.x86_64.rpm 169 kB/s |  29 kB     00:00    
(132/318): libglvnd-core-devel-1.5.0-1.fc38.x86 474 kB/s |  17 kB     00:00    
(133/318): libcurl-devel-7.84.0-3.fc38.x86_64.r 123 kB/s | 977 kB     00:07    
(134/318): libglvnd-devel-1.5.0-1.fc38.x86_64.r 2.3 MB/s | 161 kB     00:00    
(135/318): libglvnd-gles-1.5.0-1.fc38.x86_64.rp 280 kB/s |  31 kB     00:00    
(136/318): libglvnd-1.5.0-1.fc38.x86_64.rpm     391 kB/s | 133 kB     00:00    
(137/318): libglvnd-egl-1.5.0-1.fc38.x86_64.rpm 119 kB/s |  35 kB     00:00    
(138/318): libglvnd-glx-1.5.0-1.fc38.x86_64.rpm 1.0 MB/s | 140 kB     00:00    
(139/318): libglvnd-opengl-1.5.0-1.fc38.x86_64. 405 kB/s |  42 kB     00:00    
(140/318): libgudev-237-3.fc37.x86_64.rpm       279 kB/s |  35 kB     00:00    
(141/318): libicu-devel-71.1-1.fc37.x86_64.rpm  631 kB/s | 916 kB     00:01    
(142/318): libinput-1.21.0-3.fc38.x86_64.rpm    144 kB/s | 209 kB     00:01    
(143/318): libicu-71.1-1.fc37.x86_64.rpm        6.3 MB/s |  10 MB     00:01    
(144/318): libnice-0.1.19-2.fc37.x86_64.rpm      90 kB/s | 195 kB     00:02    
(145/318): libjpeg-turbo-2.1.4-1.fc38.x86_64.rp  80 kB/s | 181 kB     00:02    
(146/318): libmount-devel-2.38.1-2.fc38.x86_64. 5.7 kB/s |  18 kB     00:03    
(147/318): libogg-1.3.5-4.fc37.x86_64.rpm        35 kB/s |  33 kB     00:00    
(148/318): libpciaccess-devel-0.16-7.fc37.x86_6  41 kB/s |  12 kB     00:00    
(149/318): libpciaccess-0.16-7.fc37.x86_64.rpm   22 kB/s |  27 kB     00:01    
(150/318): libpng-1.6.37-13.fc37.x86_64.rpm      46 kB/s | 119 kB     00:02    
(151/318): libproxy-0.4.18-3.fc37.x86_64.rpm     31 kB/s |  71 kB     00:02    
(152/318): libquadmath-12.2.1-1.fc38.x86_64.rpm 3.5 MB/s | 199 kB     00:00    
(153/318): libpng-devel-1.6.37-13.fc37.x86_64.r 115 kB/s | 290 kB     00:02    
(154/318): libquadmath-devel-12.2.1-1.fc38.x86_  20 kB/s |  41 kB     00:02    
(155/318): libselinux-devel-3.4-5.fc37.x86_64.r  74 kB/s | 148 kB     00:02    
(156/318): libsepol-devel-3.4-3.fc37.x86_64.rpm  93 kB/s |  49 kB     00:00    
(157/318): libsndfile-1.1.0-3.fc37.x86_64.rpm   590 kB/s | 205 kB     00:00    
(158/318): libsrtp-2.3.0-9.fc37.x86_64.rpm      267 kB/s |  57 kB     00:00    
(159/318): libsoup-2.74.2-3.fc37.x86_64.rpm     1.4 MB/s | 402 kB     00:00    
(160/318): librsvg2-2.54.5-1.fc38.x86_64.rpm    1.3 MB/s | 3.6 MB     00:02    
(161/318): libstemmer-0-19.585svn.fc37.x86_64.r 179 kB/s |  79 kB     00:00    
(162/318): libstdc++-devel-12.2.1-1.fc38.x86_64 4.2 MB/s | 2.5 MB     00:00    
(163/318): libthai-0.1.29-3.fc37.x86_64.rpm     422 kB/s | 213 kB     00:00    
(164/318): libtheora-1.1.1-32.fc37.x86_64.rpm   1.4 MB/s | 167 kB     00:00    
(165/318): libunwind-1.6.2-3.fc37.x86_64.rpm     33 kB/s |  67 kB     00:02    
(166/318): libuv-1.44.2-2.fc37.x86_64.rpm        77 kB/s | 151 kB     00:01    
(167/318): libusb1-1.0.25-9.fc37.x86_64.rpm      36 kB/s |  74 kB     00:02    
(168/318): libva-2.15.0-2.fc37.x86_64.rpm       848 kB/s | 102 kB     00:00    
(169/318): libvisual-0.4.0-36.fc37.x86_64.rpm   1.1 MB/s | 142 kB     00:00    
(170/318): libvorbis-1.3.7-6.fc37.x86_64.rpm    1.6 MB/s | 195 kB     00:00    
(171/318): libwacom-data-2.4.0-1.fc37.noarch.rp 3.0 MB/s | 180 kB     00:00    
(172/318): libwayland-client-1.21.0-1.fc37.x86_ 1.4 MB/s |  33 kB     00:00    
(173/318): libwayland-cursor-1.21.0-1.fc37.x86_ 737 kB/s |  19 kB     00:00    
(174/318): libwayland-egl-1.21.0-1.fc37.x86_64. 470 kB/s |  13 kB     00:00    
(175/318): libwayland-server-1.21.0-1.fc37.x86_ 762 kB/s |  41 kB     00:00    
(176/318): libwacom-2.4.0-1.fc37.x86_64.rpm      69 kB/s |  42 kB     00:00    
(177/318): libwebp-1.2.4-1.fc37.x86_64.rpm      529 kB/s | 278 kB     00:00    
(178/318): libxcb-1.13.1-10.fc37.x86_64.rpm     320 kB/s | 231 kB     00:00    
(179/318): libxkbcommon-1.4.1-2.fc37.x86_64.rpm 561 kB/s | 140 kB     00:00    
(180/318): libxcb-devel-1.13.1-10.fc37.x86_64.r 4.0 MB/s | 1.4 MB     00:00    
(181/318): libxkbcommon-x11-1.4.1-2.fc37.x86_64 124 kB/s |  22 kB     00:00    
(182/318): libxml2-devel-2.9.14-3.fc37.x86_64.r 1.8 MB/s | 888 kB     00:00    
(183/318): lilv-libs-0.24.14-3.fc37.x86_64.rpm  183 kB/s |  58 kB     00:00    
(184/318): libxshmfence-1.3-11.fc37.x86_64.rpm   26 kB/s |  12 kB     00:00    
(185/318): mesa-filesystem-22.2.0~rc3-1.fc38.x8 107 kB/s |  18 kB     00:00    
(186/318): mesa-libEGL-22.2.0~rc3-1.fc38.x86_64 241 kB/s | 125 kB     00:00    
(187/318): mesa-libGL-22.2.0~rc3-1.fc38.x86_64. 344 kB/s | 176 kB     00:00    
(188/318): mesa-libEGL-devel-22.2.0~rc3-1.fc38.  28 kB/s |  19 kB     00:00    
(189/318): mesa-libGL-devel-22.2.0~rc3-1.fc38.x  57 kB/s |  35 kB     00:00    
(190/318): mesa-libGLU-9.0.1-7.fc37.x86_64.rpm  330 kB/s | 153 kB     00:00    
(191/318): mesa-libgbm-22.2.0~rc3-1.fc38.x86_64 1.5 MB/s |  45 kB     00:00    
(192/318): mesa-libGLU-devel-9.0.1-7.fc37.x86_6  20 kB/s |  13 kB     00:00    
(193/318): mesa-libglapi-22.2.0~rc3-1.fc38.x86_ 209 kB/s |  54 kB     00:00    
(194/318): mmtf-cpp-devel-1.0.0-11.fc37.x86_64.  11 kB/s |  27 kB     00:02    
(195/318): msgpack-3.1.0-10.fc37.x86_64.rpm     9.2 kB/s |  30 kB     00:03    
(196/318): msgpack-devel-3.1.0-10.fc37.x86_64.r 134 kB/s | 428 kB     00:03    
(197/318): mtdev-1.1.6-4.fc37.x86_64.rpm         19 kB/s |  20 kB     00:01    
(198/318): ncurses-6.3-3.20220501.fc37.x86_64.r 2.2 MB/s | 409 kB     00:00    
(199/318): netcdf-4.9.0-3.fc37.x86_64.rpm       3.8 MB/s | 828 kB     00:00    
(200/318): netcdf-devel-4.9.0-3.fc37.x86_64.rpm 645 kB/s |  99 kB     00:00    
(201/318): nspr-4.34.0-3.fc37.x86_64.rpm        1.0 MB/s | 137 kB     00:00    
(202/318): nss-3.81.0-1.fc37.x86_64.rpm         4.5 MB/s | 694 kB     00:00    
(203/318): nss-softokn-3.81.0-1.fc37.x86_64.rpm 5.0 MB/s | 384 kB     00:00    
(204/318): nss-softokn-freebl-3.81.0-1.fc37.x86 7.5 MB/s | 326 kB     00:00    
(205/318): nss-sysinit-3.81.0-1.fc37.x86_64.rpm 900 kB/s |  20 kB     00:00    
(206/318): nettle-3.8-2.fc37.x86_64.rpm         1.5 MB/s | 414 kB     00:00    
(207/318): openblas-0.3.21-3.fc38.x86_64.rpm    1.6 MB/s |  35 kB     00:00    
(208/318): nss-util-3.81.0-1.fc37.x86_64.rpm    705 kB/s |  87 kB     00:00    
(209/318): opus-1.3.1-11.fc37.x86_64.rpm        8.2 MB/s | 204 kB     00:00    
(210/318): orc-0.4.31-8.fc37.x86_64.rpm         3.6 MB/s | 183 kB     00:00    
(211/318): openal-soft-1.22.2-2.fc37.x86_64.rpm 2.1 MB/s | 449 kB     00:00    
(212/318): pango-1.50.9-1.fc38.x86_64.rpm       5.7 MB/s | 342 kB     00:00    
(213/318): pcre2-utf16-10.40-1.fc37.1.x86_64.rp 5.0 MB/s | 216 kB     00:00    
(214/318): pcre2-devel-10.40-1.fc37.1.x86_64.rp 5.7 MB/s | 505 kB     00:00    
(215/318): perl-Carp-1.52-489.fc37.noarch.rpm   1.4 MB/s |  29 kB     00:00    
(216/318): perl-Class-Struct-0.66-492.fc38.noar 1.2 MB/s |  25 kB     00:00    
(217/318): openblas-openmp-0.3.21-3.fc38.x86_64  15 MB/s | 5.1 MB     00:00    
(218/318): perl-DynaLoader-1.52-492.fc38.x86_64 1.4 MB/s |  29 kB     00:00    
(219/318): pcre2-utf32-10.40-1.fc37.1.x86_64.rp 2.7 MB/s | 203 kB     00:00    
(220/318): perl-Errno-1.36-492.fc38.x86_64.rpm  883 kB/s |  18 kB     00:00    
(221/318): perl-Exporter-5.77-489.fc37.noarch.r 1.5 MB/s |  31 kB     00:00    
(222/318): perl-Fcntl-1.15-492.fc38.x86_64.rpm  1.1 MB/s |  24 kB     00:00    
(223/318): perl-Encode-3.19-492.fc38.x86_64.rpm  20 MB/s | 1.7 MB     00:00    
(224/318): perl-English-1.11-492.fc38.noarch.rp 198 kB/s |  17 kB     00:00    
(225/318): perl-File-Basename-2.85-492.fc38.noa 1.0 MB/s |  20 kB     00:00    
(226/318): perl-File-Path-2.18-489.fc37.noarch. 1.6 MB/s |  35 kB     00:00    
(227/318): perl-File-Temp-0.231.100-489.fc37.no 2.8 MB/s |  59 kB     00:00    
(228/318): perl-Getopt-Long-2.52-489.fc37.noarc 2.8 MB/s |  60 kB     00:00    
(229/318): perl-Getopt-Std-1.13-492.fc38.noarch 922 kB/s |  19 kB     00:00    
(230/318): perl-File-Find-1.40-492.fc38.noarch. 306 kB/s |  28 kB     00:00    
(231/318): perl-HTTP-Tiny-0.082-1.fc37.noarch.r 2.6 MB/s |  55 kB     00:00    
(232/318): perl-File-stat-1.12-492.fc38.noarch. 248 kB/s |  20 kB     00:00    
(233/318): perl-IPC-Open3-1.22-492.fc38.noarch. 1.2 MB/s |  26 kB     00:00    
(234/318): perl-IO-1.50-492.fc38.x86_64.rpm     4.1 MB/s |  95 kB     00:00    
(235/318): perl-MIME-Base64-3.16-489.fc37.x86_6 1.4 MB/s |  30 kB     00:00    
(236/318): perl-POSIX-2.03-492.fc38.x86_64.rpm  4.7 MB/s | 101 kB     00:00    
(237/318): perl-PathTools-3.84-489.fc37.x86_64. 4.0 MB/s |  89 kB     00:00    
(238/318): perl-Pod-Escapes-1.07-489.fc37.noarc 982 kB/s |  20 kB     00:00    
(239/318): perl-Pod-Perldoc-3.28.01-490.fc37.no 4.2 MB/s |  90 kB     00:00    
(240/318): perl-Pod-Simple-3.43-490.fc37.noarch 8.6 MB/s | 225 kB     00:00    
(241/318): perl-Scalar-List-Utils-1.63-489.fc38 3.2 MB/s |  72 kB     00:00    
(242/318): perl-Socket-2.036-1.fc38.x86_64.rpm  2.6 MB/s |  55 kB     00:00    
(243/318): perl-SelectSaver-1.02-492.fc38.noarc 364 kB/s |  15 kB     00:00    
(244/318): perl-Pod-Usage-2.03-3.fc37.noarch.rp 600 kB/s |  40 kB     00:00    
(245/318): perl-Storable-3.26-489.fc37.x86_64.r 4.5 MB/s |  97 kB     00:00    
(246/318): perl-Symbol-1.09-492.fc38.noarch.rpm 856 kB/s |  17 kB     00:00    
(247/318): perl-Term-ANSIColor-5.01-490.fc37.no 2.2 MB/s |  48 kB     00:00    
(248/318): perl-Term-Cap-1.17-489.fc37.noarch.r 1.1 MB/s |  22 kB     00:00    
(249/318): perl-Text-ParseWords-3.31-489.fc37.n 821 kB/s |  16 kB     00:00    
(250/318): perl-Text-Tabs+Wrap-2021.0814-489.fc 1.1 MB/s |  22 kB     00:00    
(251/318): perl-Time-Local-1.300-489.fc37.noarc 1.6 MB/s |  33 kB     00:00    
(252/318): perl-constant-1.33-490.fc37.noarch.r 1.1 MB/s |  23 kB     00:00    
(253/318): perl-if-0.61.000-492.fc38.noarch.rpm 809 kB/s |  17 kB     00:00    
(254/318): perl-interpreter-5.36.0-492.fc38.x86 3.5 MB/s |  75 kB     00:00    
(255/318): perl-mro-1.26-492.fc38.x86_64.rpm    1.5 MB/s |  32 kB     00:00    
(256/318): perl-overload-1.35-492.fc38.noarch.r 2.2 MB/s |  49 kB     00:00    
(257/318): perl-overloading-0.02-492.fc38.noarc 782 kB/s |  16 kB     00:00    
(258/318): perl-parent-0.238-489.fc37.noarch.rp 703 kB/s |  14 kB     00:00    
(259/318): perl-libs-5.36.0-492.fc38.x86_64.rpm  29 MB/s | 2.2 MB     00:00    
(260/318): perl-podlators-4.14-489.fc37.noarch. 4.6 MB/s | 116 kB     00:00    
(261/318): perl-subs-1.04-492.fc38.noarch.rpm   725 kB/s |  15 kB     00:00    
(262/318): perl-vars-1.05-492.fc38.noarch.rpm   249 kB/s |  16 kB     00:00    
(263/318): pixman-0.40.0-6.fc37.x86_64.rpm      3.8 MB/s | 277 kB     00:00    
(264/318): python3-dbus-1.2.18-5.fc37.x86_64.rp 6.3 MB/s | 156 kB     00:00    
(265/318): python-qt5-rpm-macros-5.15.6-7.fc37. 191 kB/s | 9.4 kB     00:00    
(266/318): pulseaudio-libs-16.1-1.fc37.x86_64.r 5.4 MB/s | 686 kB     00:00    
(267/318): python3-pyqt5-sip-12.11.0-2.fc37.x86 1.8 MB/s |  70 kB     00:00    
(268/318): python3-mmtf-1.1.2-18.fc37.noarch.rp 797 kB/s |  77 kB     00:00    
(269/318): python3-msgpack-1.0.4-3.fc37.x86_64. 1.0 MB/s |  96 kB     00:00    
(270/318): python3-qt5-5.15.6-7.fc37.x86_64.rpm  13 MB/s | 1.2 MB     00:00    
(271/318): python3-qt5-devel-5.15.6-7.fc37.x86_ 4.4 MB/s | 523 kB     00:00    
(272/318): python3-qt5-base-5.15.6-7.fc37.x86_6  19 MB/s | 3.3 MB     00:00    
(273/318): qt-settings-37.0-1.fc38.noarch.rpm    45 kB/s |  11 kB     00:00    
(274/318): qt5-qtbase-common-5.15.5-4.fc38.noar 184 kB/s |  12 kB     00:00    
(275/318): qt5-qtbase-5.15.5-4.fc38.x86_64.rpm   12 MB/s | 3.6 MB     00:00    
(276/318): python3-simplejson-3.17.6-4.fc37.x86 609 kB/s | 328 kB     00:00    
(277/318): qt5-qtbase-gui-5.15.5-4.fc38.x86_64.  17 MB/s | 6.4 MB     00:00    
(278/318): qt5-qtbase-devel-5.15.5-4.fc38.x86_6 6.6 MB/s | 3.5 MB     00:00    
(279/318): qt5-qtconnectivity-5.15.5-2.fc37.x86 986 kB/s | 465 kB     00:00    
(280/318): qt5-qtdeclarative-5.15.5-2.fc37.x86_ 9.2 MB/s | 4.2 MB     00:00    
(281/318): qt5-qtlocation-5.15.5-3.fc37.x86_64. 7.1 MB/s | 3.0 MB     00:00    
(282/318): qt5-qtsensors-5.15.5-2.fc37.x86_64.r 2.0 MB/s | 227 kB     00:00    
(283/318): qt5-qtmultimedia-5.15.5-2.fc37.x86_6 1.3 MB/s | 812 kB     00:00    
(284/318): qt5-qtserialport-5.15.5-2.fc37.x86_6  22 kB/s |  65 kB     00:03    
(285/318): qt5-qtsvg-5.15.5-2.fc37.x86_64.rpm    59 kB/s | 186 kB     00:03    
(286/318): qt5-qttools-common-5.15.5-2.fc37.noa 3.8 kB/s |  11 kB     00:03    
(287/318): qt5-qtwebchannel-5.15.5-2.fc37.x86_6 651 kB/s | 100 kB     00:00    
(288/318): qt5-qttools-libs-help-5.15.5-2.fc37. 135 kB/s | 157 kB     00:01    
(289/318): qt5-qtwebsockets-5.15.5-2.fc37.x86_6  92 kB/s |  87 kB     00:00    
(290/318): qt5-qttools-libs-designer-5.15.5-2.f 1.9 MB/s | 2.7 MB     00:01    
(291/318): qt5-rpm-macros-5.15.5-2.fc37.noarch. 153 kB/s | 9.8 kB     00:00    
(292/318): rhash-1.4.2-3.fc37.x86_64.rpm        1.0 MB/s | 185 kB     00:00    
(293/318): qt5-qtx11extras-5.15.5-2.fc37.x86_64 118 kB/s |  35 kB     00:00    
(294/318): serd-0.30.12-2.fc37.x86_64.rpm       515 kB/s |  61 kB     00:00    
(295/318): qt5-qtxmlpatterns-5.15.5-2.fc37.x86_ 2.4 MB/s | 997 kB     00:00    
(296/318): snappy-1.1.9-5.fc37.x86_64.rpm       443 kB/s |  36 kB     00:00    
(297/318): shared-mime-info-2.2-2.fc37.x86_64.r 1.2 MB/s | 381 kB     00:00    
(298/318): sratom-0.6.10-2.fc37.x86_64.rpm      374 kB/s |  26 kB     00:00    
(299/318): sord-0.16.10-1.fc37.x86_64.rpm       184 kB/s |  46 kB     00:00    
(300/318): soundtouch-2.3.1-3.fc37.x86_64.rpm   432 kB/s |  94 kB     00:00    
(301/318): valgrind-devel-3.19.0-4.fc37.x86_64. 2.3 MB/s |  49 kB     00:00    
(302/318): vim-filesystem-9.0.327-1.fc38.noarch 998 kB/s |  20 kB     00:00    
(303/318): vulkan-headers-1.3.224.0-1.fc38.noar  19 MB/s | 942 kB     00:00    
(304/318): valgrind-3.19.0-4.fc37.x86_64.rpm     19 MB/s | 4.8 MB     00:00    
(305/318): sysprof-capture-devel-3.45.1-1.fc37. 176 kB/s |  58 kB     00:00    
(306/318): vulkan-loader-1.3.224.0-1.fc38.x86_6 305 kB/s | 141 kB     00:00    
(307/318): vulkan-loader-devel-1.3.224.0-1.fc38  28 kB/s | 9.1 kB     00:00    
(308/318): xcb-util-image-0.4.0-20.fc37.x86_64. 228 kB/s |  19 kB     00:00    
(309/318): xcb-util-keysyms-0.4.0-18.fc37.x86_6 365 kB/s |  14 kB     00:00    
(310/318): xcb-util-renderutil-0.3.9-21.fc37.x8 684 kB/s |  17 kB     00:00    
(311/318): xcb-util-wm-0.4.1-23.fc37.x86_64.rpm 652 kB/s |  31 kB     00:00    
(312/318): xcb-util-0.4.0-20.fc37.x86_64.rpm     47 kB/s |  18 kB     00:00    
(313/318): webrtc-audio-processing-0.3.1-9.fc37 462 kB/s | 304 kB     00:00    
(314/318): xml-common-0.6.3-59.fc37.noarch.rpm  244 kB/s |  31 kB     00:00    
[MIRROR] xz-devel-5.2.6-1.fc38.x86_64.rpm: Status code: 404 for http://forksystems.mm.fcix.net/fedora/linux/development/rawhide/Everything/x86_64/os/Packages/x/xz-devel-5.2.6-1.fc38.x86_64.rpm (IP: 2620:39:6000:103::2)
(315/318): xkeyboard-config-2.36-2.fc37.noarch. 2.4 MB/s | 957 kB     00:00    
(316/318): zlib-devel-1.2.12-5.fc38.x86_64.rpm  981 kB/s |  44 kB     00:00    
[MIRROR] xz-devel-5.2.6-1.fc38.x86_64.rpm: Status code: 404 for https://forksystems.mm.fcix.net/fedora/linux/development/rawhide/Everything/x86_64/os/Packages/x/xz-devel-5.2.6-1.fc38.x86_64.rpm (IP: 2620:39:6000:103::2)
(317/318): xorg-x11-proto-devel-2022.2-2.fc38.n 522 kB/s | 299 kB     00:00    
(318/318): xz-devel-5.2.6-1.fc38.x86_64.rpm      83 kB/s |  57 kB     00:00    
--------------------------------------------------------------------------------
Total                                           2.6 MB/s | 165 MB     01:04     
Running transaction check
Transaction check succeeded.
Running transaction test
Transaction test succeeded.
Running transaction
  Preparing        :                                                        1/1 
  Installing       : cmake-filesystem-3.24.1-1.fc38.x86_64                1/318 
  Installing       : libpng-2:1.6.37-13.fc37.x86_64                       2/318 
  Installing       : nspr-4.34.0-3.fc37.x86_64                            3/318 
  Installing       : expat-2.4.8-2.fc37.x86_64                            4/318 
  Installing       : zlib-devel-1.2.12-5.fc38.x86_64                      5/318 
  Installing       : libwayland-client-1.21.0-1.fc37.x86_64               6/318 
  Installing       : libogg-2:1.3.5-4.fc37.x86_64                         7/318 
  Installing       : libglvnd-1:1.5.0-1.fc38.x86_64                       8/318 
  Installing       : libX11-xcb-1.8.1-2.fc38.x86_64                       9/318 
  Installing       : dbus-libs-1:1.14.0-5.fc38.x86_64                    10/318 
  Installing       : nss-util-3.81.0-1.fc37.x86_64                       11/318 
  Installing       : libquadmath-12.2.1-1.fc38.x86_64                    12/318 
  Installing       : libgfortran-12.2.1-1.fc38.x86_64                    13/318 
  Installing       : libmpc-1.2.1-5.fc37.x86_64                          14/318 
  Installing       : libjpeg-turbo-2.1.4-1.fc38.x86_64                   15/318 
  Installing       : libicu-71.1-1.fc37.x86_64                           16/318 
  Installing       : serd-0.30.12-2.fc37.x86_64                          17/318 
  Installing       : python-rpm-macros-3.11-4.fc37.noarch                18/318 
  Installing       : opus-1.3.1-11.fc37.x86_64                           19/318 
  Installing       : mesa-libglapi-22.2.0~rc3-1.fc38.x86_64              20/318 
  Installing       : libaec-1.0.6-3.fc37.x86_64                          21/318 
  Installing       : hdf5-1.12.1-10.fc37.x86_64                          22/318 
  Installing       : python3-rpm-macros-3.11-4.fc37.noarch               23/318 
  Installing       : sord-0.16.10-1.fc37.x86_64                          24/318 
  Installing       : libvorbis-1:1.3.7-6.fc37.x86_64                     25/318 
  Installing       : xorg-x11-proto-devel-2022.2-2.fc38.noarch           26/318 
  Running scriptlet: xml-common-0.6.3-59.fc37.noarch                     27/318 
  Installing       : xml-common-0.6.3-59.fc37.noarch                     27/318 
  Installing       : vulkan-loader-1.3.224.0-1.fc38.x86_64               28/318 
  Installing       : qt5-qttools-common-5.15.5-2.fc37.noarch             29/318 
  Installing       : pcre2-utf16-10.40-1.fc37.1.x86_64                   30/318 
  Installing       : orc-0.4.31-8.fc37.x86_64                            31/318 
  Installing       : nettle-3.8-2.fc37.x86_64                            32/318 
  Installing       : gnutls-3.7.7-1.fc37.x86_64                          33/318 
  Installing       : glib2-2.73.3-2.fc38.x86_64                          34/318 
  Installing       : libgudev-237-3.fc37.x86_64                          35/318 
  Installing       : libxshmfence-1.3-11.fc37.x86_64                     36/318 
  Installing       : libwayland-server-1.21.0-1.fc37.x86_64              37/318 
  Installing       : libdvdread-6.1.3-2.fc37.x86_64                      38/318 
  Installing       : libXau-1.0.10-1.fc38.x86_64                         39/318 
  Installing       : libxcb-1.13.1-10.fc37.x86_64                        40/318 
  Installing       : libICE-1.0.10-9.fc37.x86_64                         41/318 
  Installing       : kernel-headers-6.0.0-0.rc3.git0.1.fc38.x86_64       42/318 
  Installing       : gsm-1.0.22-1.fc37.x86_64                            43/318 
  Installing       : graphite2-1.3.14-10.fc37.x86_64                     44/318 
  Installing       : harfbuzz-5.1.0-2.fc37.x86_64                        45/318 
  Installing       : freetype-2.12.1-3.fc37.x86_64                       46/318 
  Installing       : gl-manpages-1.1-25.20190306.fc37.noarch             47/318 
  Installing       : fonts-filesystem-1:2.0.5-9.fc38.noarch              48/318 
  Installing       : flexiblas-3.2.1-2.fc37.x86_64                       49/318 
  Installing       : emacs-filesystem-1:28.1-3.fc37.noarch               50/318 
  Installing       : alsa-lib-1.2.7.2-2.fc37.x86_64                      51/318 
  Installing       : harfbuzz-icu-5.1.0-2.fc37.x86_64                    52/318 
  Installing       : graphite2-devel-1.3.14-10.fc37.x86_64               53/318 
  Installing       : libSM-1.2.3-11.fc37.x86_64                          54/318 
  Installing       : xcb-util-0.4.0-20.fc37.x86_64                       55/318 
  Installing       : xcb-util-image-0.4.0-20.fc37.x86_64                 56/318 
  Installing       : xcb-util-keysyms-0.4.0-18.fc37.x86_64               57/318 
  Installing       : xcb-util-renderutil-0.3.9-21.fc37.x86_64            58/318 
  Installing       : xcb-util-wm-0.4.1-23.fc37.x86_64                    59/318 
  Installing       : libXau-devel-1.0.10-1.fc38.x86_64                   60/318 
  Installing       : libxcb-devel-1.13.1-10.fc37.x86_64                  61/318 
  Installing       : libdvdnav-6.1.1-4.fc37.x86_64                       62/318 
  Installing       : graphene-1.10.6-4.fc37.x86_64                       63/318 
  Installing       : gsettings-desktop-schemas-43~alpha-4.fc37.x86_64    64/318 
  Installing       : json-glib-1.6.6-3.fc37.x86_64                       65/318 
  Installing       : shared-mime-info-2.2-2.fc37.x86_64                  66/318 
  Running scriptlet: shared-mime-info-2.2-2.fc37.x86_64                  66/318 
  Installing       : gdk-pixbuf2-2.42.9-1.fc38.x86_64                    67/318 
  Installing       : iso-codes-4.11.0-1.fc37.noarch                      68/318 
  Installing       : sratom-0.6.10-2.fc37.x86_64                         69/318 
  Installing       : lilv-libs-0.24.14-3.fc37.x86_64                     70/318 
  Installing       : pyproject-rpm-macros-1.3.3-1.fc38.noarch            71/318 
  Installing       : libaec-devel-1.0.6-3.fc37.x86_64                    72/318 
  Installing       : libicu-devel-71.1-1.fc37.x86_64                     73/318 
  Installing       : hdf-libs-4.2.15-11.fc37.x86_64                      74/318 
  Installing       : cpp-12.2.1-1.fc38.x86_64                            75/318 
  Installing       : nss-softokn-freebl-3.81.0-1.fc37.x86_64             76/318 
  Installing       : nss-softokn-3.81.0-1.fc37.x86_64                    77/318 
  Installing       : avahi-libs-0.8-17.fc37.x86_64                       78/318 
  Installing       : cups-libs-1:2.4.2-4.fc38.x86_64                     79/318 
  Installing       : libglvnd-opengl-1:1.5.0-1.fc38.x86_64               80/318 
  Installing       : flac-libs-1.3.4-2.fc37.x86_64                       81/318 
  Installing       : libsndfile-1.1.0-3.fc37.x86_64                      82/318 
  Installing       : libtheora-1:1.1.1-32.fc37.x86_64                    83/318 
  Installing       : libwayland-cursor-1.21.0-1.fc37.x86_64              84/318 
  Installing       : libpng-devel-2:1.6.37-13.fc37.x86_64                85/318 
  Installing       : xz-devel-5.2.6-1.fc38.x86_64                        86/318 
  Installing       : xkeyboard-config-2.36-2.fc37.noarch                 87/318 
  Installing       : libxkbcommon-1.4.1-2.fc37.x86_64                    88/318 
  Installing       : libxkbcommon-x11-1.4.1-2.fc37.x86_64                89/318 
  Installing       : webrtc-audio-processing-0.3.1-9.fc37.x86_64         90/318 
  Installing       : vulkan-headers-1.3.224.0-1.fc38.noarch              91/318 
  Installing       : vulkan-loader-devel-1.3.224.0-1.fc38.x86_64         92/318 
  Installing       : vim-filesystem-2:9.0.327-1.fc38.noarch              93/318 
  Installing       : sysprof-capture-devel-3.45.1-1.fc37.x86_64          94/318 
  Installing       : soundtouch-2.3.1-3.fc37.x86_64                      95/318 
  Installing       : snappy-1.1.9-5.fc37.x86_64                          96/318 
  Installing       : blosc-1.21.1-3.fc37.x86_64                          97/318 
  Installing       : netcdf-4.9.0-3.fc37.x86_64                          98/318 
  Installing       : rhash-1.4.2-3.fc37.x86_64                           99/318 
  Installing       : qt-settings-37.0-1.fc38.noarch                     100/318 
  Installing       : qt5-qtbase-common-5.15.5-4.fc38.noarch             101/318 
  Running scriptlet: qt5-qtbase-5.15.5-4.fc38.x86_64                    102/318 
  Installing       : qt5-qtbase-5.15.5-4.fc38.x86_64                    102/318 
  Running scriptlet: qt5-qtbase-5.15.5-4.fc38.x86_64                    102/318 
  Installing       : qt5-qtserialport-5.15.5-2.fc37.x86_64              103/318 
  Installing       : qt5-qtwebsockets-5.15.5-2.fc37.x86_64              104/318 
  Installing       : python-qt5-rpm-macros-5.15.6-7.fc37.noarch         105/318 
  Installing       : python-pip-wheel-22.2.2-1.fc38.noarch              106/318 
  Installing       : pixman-0.40.0-6.fc37.x86_64                        107/318 
  Installing       : pcre2-utf32-10.40-1.fc37.1.x86_64                  108/318 
  Installing       : pcre2-devel-10.40-1.fc37.1.x86_64                  109/318 
  Installing       : openblas-0.3.21-3.fc38.x86_64                      110/318 
  Installing       : openblas-openmp-0.3.21-3.fc38.x86_64               111/318 
  Installing       : flexiblas-netlib-3.2.1-2.fc37.x86_64               112/318 
  Installing       : flexiblas-openblas-openmp-3.2.1-2.fc37.x86_64      113/318 
  Installing       : openal-soft-1.22.2-2.fc37.x86_64                   114/318 
  Installing       : ncurses-6.3-3.20220501.fc37.x86_64                 115/318 
  Installing       : mtdev-1.1.6-4.fc37.x86_64                          116/318 
  Installing       : msgpack-3.1.0-10.fc37.x86_64                       117/318 
  Installing       : msgpack-devel-3.1.0-10.fc37.x86_64                 118/318 
  Installing       : mpdecimal-2.5.1-4.fc37.x86_64                      119/318 
  Installing       : mesa-filesystem-22.2.0~rc3-1.fc38.x86_64           120/318 
  Installing       : libwebp-1.2.4-1.fc37.x86_64                        121/318 
  Installing       : libwayland-egl-1.21.0-1.fc37.x86_64                122/318 
  Installing       : libwacom-data-2.4.0-1.fc37.noarch                  123/318 
  Installing       : libvisual-1:0.4.0-36.fc37.x86_64                   124/318 
  Installing       : libuv-1:1.44.2-2.fc37.x86_64                       125/318 
  Installing       : libusb1-1.0.25-9.fc37.x86_64                       126/318 
  Installing       : libunwind-1.6.2-3.fc37.x86_64                      127/318 
  Installing       : libtool-ltdl-2.4.7-2.fc37.x86_64                   128/318 
  Installing       : libstemmer-0-19.585svn.fc37.x86_64                 129/318 
  Installing       : libstdc++-devel-12.2.1-1.fc38.x86_64               130/318 
  Installing       : libsepol-devel-3.4-3.fc37.x86_64                   131/318 
  Installing       : libselinux-devel-3.4-5.fc37.x86_64                 132/318 
  Installing       : libproxy-0.4.18-3.fc37.x86_64                      133/318 
  Installing       : glib-networking-2.74~alpha-4.fc37.x86_64           134/318 
  Installing       : libsoup-2.74.2-3.fc37.x86_64                       135/318 
  Installing       : gssdp-1.4.0.1-3.fc37.x86_64                        136/318 
  Installing       : libglvnd-core-devel-1:1.5.0-1.fc38.x86_64          137/318 
  Installing       : libffi-devel-3.4.2-9.fc37.x86_64                   138/318 
  Installing       : libevdev-1.13.0-1.fc37.x86_64                      139/318 
  Installing       : libdatrie-0.2.13-4.fc37.x86_64                     140/318 
  Installing       : libthai-0.1.29-3.fc37.x86_64                       141/318 
  Installing       : libcurl-devel-7.84.0-3.fc38.x86_64                 142/318 
  Installing       : libblkid-devel-2.38.1-2.fc38.x86_64                143/318 
  Installing       : libmount-devel-2.38.1-2.fc38.x86_64                144/318 
  Installing       : libb2-0.98.1-7.fc37.x86_64                         145/318 
  Installing       : libasyncns-0.8-23.fc37.x86_64                      146/318 
  Installing       : pulseaudio-libs-16.1-1.fc37.x86_64                 147/318 
  Installing       : libX11-common-1.8.1-2.fc38.noarch                  148/318 
  Installing       : libX11-1.8.1-2.fc38.x86_64                         149/318 
  Installing       : libXext-1.3.4-9.fc37.x86_64                        150/318 
  Installing       : libXrender-0.9.10-17.fc37.x86_64                   151/318 
  Installing       : libXfixes-6.0.0-4.fc37.x86_64                      152/318 
  Installing       : libXi-1.8-3.fc37.x86_64                            153/318 
  Installing       : libXv-1.0.11-17.fc37.x86_64                        154/318 
  Installing       : libXxf86vm-1.1.4-19.fc37.x86_64                    155/318 
  Installing       : libX11-devel-1.8.1-2.fc38.x86_64                   156/318 
  Installing       : lcms2-2.13.1-2.fc37.x86_64                         157/318 
  Installing       : jsoncpp-1.9.5-3.fc37.x86_64                        158/318 
  Installing       : hwdata-0.361-2.fc37.noarch                         159/318 
  Installing       : libpciaccess-0.16-7.fc37.x86_64                    160/318 
  Installing       : libdrm-2.4.112-1.fc38.x86_64                       161/318 
  Installing       : libglvnd-glx-1:1.5.0-1.fc38.x86_64                 162/318 
  Installing       : mesa-libGL-22.2.0~rc3-1.fc38.x86_64                163/318 
  Installing       : mesa-libgbm-22.2.0~rc3-1.fc38.x86_64               164/318 
  Installing       : libglvnd-egl-1:1.5.0-1.fc38.x86_64                 165/318 
  Installing       : mesa-libEGL-22.2.0~rc3-1.fc38.x86_64               166/318 
  Installing       : libglvnd-gles-1:1.5.0-1.fc38.x86_64                167/318 
  Installing       : libglvnd-devel-1:1.5.0-1.fc38.x86_64               168/318 
  Installing       : mesa-libEGL-devel-22.2.0~rc3-1.fc38.x86_64         169/318 
  Installing       : freeglut-3.2.2-2.fc37.x86_64                       170/318 
  Installing       : glx-utils-8.4.0-14.20210504git0f9e7d9.fc37.x86_6   171/318 
  Installing       : libGLEW-2.2.0-3.fc37.x86_64                        172/318 
  Installing       : libva-2.15.0-2.fc37.x86_64                         173/318 
  Installing       : mesa-libGLU-9.0.1-7.fc37.x86_64                    174/318 
  Installing       : mesa-libGLU-devel-9.0.1-7.fc37.x86_64              175/318 
  Installing       : libpciaccess-devel-0.16-7.fc37.x86_64              176/318 
  Running scriptlet: groff-base-1.22.4-10.fc37.x86_64                   177/318 
  Installing       : groff-base-1.22.4-10.fc37.x86_64                   177/318 
  Running scriptlet: groff-base-1.22.4-10.fc37.x86_64                   177/318 
  Installing       : perl-Text-Tabs+Wrap-2021.0814-489.fc37.noarch      178/318 
  Installing       : perl-if-0.61.000-492.fc38.noarch                   179/318 
  Installing       : perl-Time-Local-2:1.300-489.fc37.noarch            180/318 
  Installing       : perl-File-Path-2.18-489.fc37.noarch                181/318 
  Installing       : perl-Pod-Escapes-1:1.07-489.fc37.noarch            182/318 
  Installing       : perl-Class-Struct-0.66-492.fc38.noarch             183/318 
  Installing       : perl-POSIX-2.03-492.fc38.x86_64                    184/318 
  Installing       : perl-Term-ANSIColor-5.01-490.fc37.noarch           185/318 
  Installing       : perl-IPC-Open3-1.22-492.fc38.noarch                186/318 
  Installing       : perl-HTTP-Tiny-0.082-1.fc37.noarch                 187/318 
  Installing       : perl-subs-1.04-492.fc38.noarch                     188/318 
  Installing       : perl-File-Temp-1:0.231.100-489.fc37.noarch         189/318 
  Installing       : perl-Term-Cap-1.17-489.fc37.noarch                 190/318 
  Installing       : perl-Pod-Simple-1:3.43-490.fc37.noarch             191/318 
  Installing       : perl-Socket-4:2.036-1.fc38.x86_64                  192/318 
  Installing       : perl-SelectSaver-1.02-492.fc38.noarch              193/318 
  Installing       : perl-Symbol-1.09-492.fc38.noarch                   194/318 
  Installing       : perl-File-stat-1.12-492.fc38.noarch                195/318 
  Installing       : perl-podlators-1:4.14-489.fc37.noarch              196/318 
  Installing       : perl-Pod-Perldoc-3.28.01-490.fc37.noarch           197/318 
  Installing       : perl-Fcntl-1.15-492.fc38.x86_64                    198/318 
  Installing       : perl-Text-ParseWords-3.31-489.fc37.noarch          199/318 
  Installing       : perl-mro-1.26-492.fc38.x86_64                      200/318 
  Installing       : perl-IO-1.50-492.fc38.x86_64                       201/318 
  Installing       : perl-overloading-0.02-492.fc38.noarch              202/318 
  Installing       : perl-Pod-Usage-4:2.03-3.fc37.noarch                203/318 
  Installing       : perl-Errno-1.36-492.fc38.x86_64                    204/318 
  Installing       : perl-File-Basename-2.85-492.fc38.noarch            205/318 
  Installing       : perl-Getopt-Std-1.13-492.fc38.noarch               206/318 
  Installing       : perl-MIME-Base64-3.16-489.fc37.x86_64              207/318 
  Installing       : perl-Scalar-List-Utils-5:1.63-489.fc38.x86_64      208/318 
  Installing       : perl-constant-1.33-490.fc37.noarch                 209/318 
  Installing       : perl-Storable-1:3.26-489.fc37.x86_64               210/318 
  Installing       : perl-overload-1.35-492.fc38.noarch                 211/318 
  Installing       : perl-parent-1:0.238-489.fc37.noarch                212/318 
  Installing       : perl-vars-1.05-492.fc38.noarch                     213/318 
  Installing       : perl-Getopt-Long-1:2.52-489.fc37.noarch            214/318 
  Installing       : perl-Carp-1.52-489.fc37.noarch                     215/318 
  Installing       : perl-Exporter-5.77-489.fc37.noarch                 216/318 
  Installing       : perl-PathTools-3.84-489.fc37.x86_64                217/318 
  Installing       : perl-DynaLoader-1.52-492.fc38.x86_64               218/318 
  Installing       : perl-Encode-4:3.19-492.fc38.x86_64                 219/318 
  Installing       : perl-libs-4:5.36.0-492.fc38.x86_64                 220/318 
  Installing       : perl-interpreter-4:5.36.0-492.fc38.x86_64          221/318 
  Installing       : valgrind-1:3.19.0-4.fc37.x86_64                    222/318 
  Installing       : valgrind-devel-1:3.19.0-4.fc37.x86_64              223/318 
  Installing       : libdrm-devel-2.4.112-1.fc38.x86_64                 224/318 
  Installing       : mesa-libGL-devel-22.2.0~rc3-1.fc38.x86_64          225/318 
  Installing       : perl-English-1.11-492.fc38.noarch                  226/318 
  Installing       : perl-File-Find-1.40-492.fc38.noarch                227/318 
  Installing       : google-noto-fonts-common-20201206^1.git0c78c8329   228/318 
  Installing       : google-noto-sans-vf-fonts-20201206^1.git0c78c832   229/318 
  Installing       : langpacks-core-font-en-3.0-26.fc37.noarch          230/318 
  Installing       : fontconfig-2.14.0-2.fc37.x86_64                    231/318 
  Running scriptlet: fontconfig-2.14.0-2.fc37.x86_64                    231/318 
  Installing       : cairo-1.17.6-2.fc37.x86_64                         232/318 
  Installing       : cairo-gobject-1.17.6-2.fc37.x86_64                 233/318 
  Installing       : libXft-2.3.4-3.fc37.x86_64                         234/318 
  Installing       : glibc-headers-x86-2.36.9000-4.fc38.noarch          235/318 
  Installing       : libxcrypt-devel-4.4.28-3.fc38.x86_64               236/318 
  Installing       : glibc-devel-2.36.9000-4.fc38.x86_64                237/318 
  Installing       : gc-8.0.6-4.fc37.x86_64                             238/318 
  Installing       : guile22-2.2.7-6.fc37.x86_64                        239/318 
  Installing       : make-1:4.3-11.fc37.x86_64                          240/318 
  Installing       : gcc-12.2.1-1.fc38.x86_64                           241/318 
  Running scriptlet: gcc-12.2.1-1.fc38.x86_64                           241/318 
  Installing       : gcc-c++-12.2.1-1.fc38.x86_64                       242/318 
  Installing       : libquadmath-devel-12.2.1-1.fc38.x86_64             243/318 
  Installing       : gcc-gfortran-12.2.1-1.fc38.x86_64                  244/318 
  Installing       : hdf5-devel-1.12.1-10.fc37.x86_64                   245/318 
  Installing       : fribidi-1.0.12-2.fc37.x86_64                       246/318 
  Installing       : pango-1.50.9-1.fc38.x86_64                         247/318 
  Installing       : librsvg2-2.54.5-1.fc38.x86_64                      248/318 
  Installing       : fdk-aac-free-2.0.0-9.fc37.x86_64                   249/318 
  Installing       : dbus-common-1:1.14.0-5.fc38.noarch                 250/318 
  Running scriptlet: dbus-common-1:1.14.0-5.fc38.noarch                 250/318 
  Running scriptlet: dbus-broker-32-1.fc37.x86_64                       251/318 
  Installing       : dbus-broker-32-1.fc37.x86_64                       251/318 
  Running scriptlet: dbus-broker-32-1.fc37.x86_64                       251/318 
  Installing       : dbus-1:1.14.0-5.fc38.x86_64                        252/318 
  Installing       : gupnp-1.4.3-3.fc37.x86_64                          253/318 
  Installing       : gupnp-igd-1.2.0-6.fc37.x86_64                      254/318 
  Installing       : libnice-0.1.19-2.fc37.x86_64                       255/318 
  Installing       : cdparanoia-libs-10.2-40.fc37.x86_64                256/318 
  Installing       : bzip2-devel-1.0.8-12.fc37.x86_64                   257/318 
  Installing       : bluez-libs-5.65-2.fc38.x86_64                      258/318 
  Installing       : annobin-docs-10.81-1.fc38.noarch                   259/318 
  Installing       : python-setuptools-wheel-65.3.0-1.fc38.noarch       260/318 
  Installing       : python3-3.11.0~rc1-2.fc38.x86_64                   261/318 
  Installing       : python3-libs-3.11.0~rc1-2.fc38.x86_64              262/318 
  Installing       : gstreamer1-1.20.3-2.fc37.x86_64                    263/318 
  Installing       : gstreamer1-plugins-base-1.20.3-2.fc37.x86_64       264/318 
  Installing       : cmake-rpm-macros-3.24.1-1.fc38.noarch              265/318 
  Installing       : cmake-3.24.1-1.fc38.x86_64                         266/318 
  Installing       : cmake-data-3.24.1-1.fc38.noarch                    267/318 
  Installing       : qt5-rpm-macros-5.15.5-2.fc37.noarch                268/318 
  Installing       : crypto-policies-scripts-20220824-2.git2187e9c.fc   269/318 
  Installing       : nss-sysinit-3.81.0-1.fc37.x86_64                   270/318 
  Installing       : nss-3.81.0-1.fc37.x86_64                           271/318 
  Running scriptlet: nss-3.81.0-1.fc37.x86_64                           271/318 
  Installing       : libsrtp-2.3.0-9.fc37.x86_64                        272/318 
  Installing       : gstreamer1-plugins-bad-free-1.20.3-2.fc37.x86_64   273/318 
  Installing       : glib2-devel-2.73.3-2.fc38.x86_64                   274/318 
  Installing       : libwacom-2.4.0-1.fc37.x86_64                       275/318 
  Installing       : libinput-1.21.0-3.fc38.x86_64                      276/318 
  Running scriptlet: libinput-1.21.0-3.fc38.x86_64                      276/318 
  Installing       : qt5-qtbase-gui-5.15.5-4.fc38.x86_64                277/318 
  Installing       : qt5-qtdeclarative-5.15.5-2.fc37.x86_64             278/318 
  Installing       : qt5-qtconnectivity-5.15.5-2.fc37.x86_64            279/318 
  Installing       : qt5-qtlocation-5.15.5-3.fc37.x86_64                280/318 
  Installing       : qt5-qtmultimedia-5.15.5-2.fc37.x86_64              281/318 
  Installing       : qt5-qtsensors-5.15.5-2.fc37.x86_64                 282/318 
  Installing       : qt5-qtwebchannel-5.15.5-2.fc37.x86_64              283/318 
  Installing       : qt5-qtxmlpatterns-5.15.5-2.fc37.x86_64             284/318 
  Installing       : qt5-qtbase-devel-5.15.5-4.fc38.x86_64              285/318 
  Installing       : qt5-qtsvg-5.15.5-2.fc37.x86_64                     286/318 
  Installing       : qt5-qttools-libs-designer-5.15.5-2.fc37.x86_64     287/318 
  Installing       : qt5-qttools-libs-help-5.15.5-2.fc37.x86_64         288/318 
  Installing       : qt5-qtx11extras-5.15.5-2.fc37.x86_64               289/318 
  Installing       : python3-dbus-1.2.18-5.fc37.x86_64                  290/318 
  Installing       : python3-msgpack-1.0.4-3.fc37.x86_64                291/318 
  Installing       : python3-pyparsing-3.0.9-2.fc37.noarch              292/318 
  Installing       : python3-packaging-21.3-7.fc38.noarch               293/318 
  Installing       : python3-rpm-generators-13-2.fc37.noarch            294/318 
  Installing       : python3-pyqt5-sip-12.11.0-2.fc37.x86_64            295/318 
  Installing       : python3-qt5-base-5.15.6-7.fc37.x86_64              296/318 
  Installing       : python3-qt5-5.15.6-7.fc37.x86_64                   297/318 
  Installing       : brotli-1.0.9-9.fc38.x86_64                         298/318 
  Installing       : brotli-devel-1.0.9-9.fc38.x86_64                   299/318 
  Installing       : harfbuzz-devel-5.1.0-2.fc37.x86_64                 300/318 
  Installing       : freetype-devel-2.12.1-3.fc37.x86_64                301/318 
  Installing       : python3-qt5-devel-5.15.6-7.fc37.x86_64             302/318 
  Installing       : python3-devel-3.11.0~rc1-2.fc38.x86_64             303/318 
  Installing       : python3-mmtf-1.1.2-18.fc37.noarch                  304/318 
  Installing       : python3-numpy-1:1.22.0-7.fc38.x86_64               305/318 
  Installing       : python3-setuptools-65.3.0-1.fc38.noarch            306/318 
  Installing       : python3-simplejson-3.17.6-4.fc37.x86_64            307/318 
  Installing       : annobin-plugin-gcc-10.81-1.fc38.x86_64             308/318 
  Running scriptlet: annobin-plugin-gcc-10.81-1.fc38.x86_64             308/318 
  Installing       : netcdf-devel-4.9.0-3.fc37.x86_64                   309/318 
  Installing       : gcc-plugin-annobin-12.2.1-1.fc38.x86_64            310/318 
  Installing       : freeglut-devel-3.2.2-2.fc37.x86_64                 311/318 
  Installing       : glew-devel-2.2.0-3.fc37.x86_64                     312/318 
  Installing       : libappstream-glib-0.8.1-1.fc38.x86_64              313/318 
  Installing       : mmtf-cpp-devel-1.0.0-11.fc37.x86_64                314/318 
  Installing       : libxml2-devel-2.9.14-3.fc37.x86_64                 315/318 
  Installing       : desktop-file-utils-0.26-7.fc37.x86_64              316/318 
  Installing       : catch-devel-2.13.8-3.fc37.x86_64                   317/318 
  Installing       : glm-devel-0.9.9.8-4.fc37.noarch                    318/318 
  Running scriptlet: fontconfig-2.14.0-2.fc37.x86_64                    318/318 
  Running scriptlet: crypto-policies-scripts-20220824-2.git2187e9c.fc   318/318 
  Running scriptlet: nss-3.81.0-1.fc37.x86_64                           318/318 
  Running scriptlet: glm-devel-0.9.9.8-4.fc37.noarch                    318/318 
  Verifying        : brotli-1.0.9-9.fc38.x86_64                           1/318 
  Verifying        : brotli-devel-1.0.9-9.fc38.x86_64                     2/318 
  Verifying        : python-setuptools-wheel-65.3.0-1.fc38.noarch         3/318 
  Verifying        : python3-numpy-1:1.22.0-7.fc38.x86_64                 4/318 
  Verifying        : python3-setuptools-65.3.0-1.fc38.noarch              5/318 
  Verifying        : alsa-lib-1.2.7.2-2.fc37.x86_64                       6/318 
  Verifying        : annobin-docs-10.81-1.fc38.noarch                     7/318 
  Verifying        : annobin-plugin-gcc-10.81-1.fc38.x86_64               8/318 
  Verifying        : avahi-libs-0.8-17.fc37.x86_64                        9/318 
  Verifying        : blosc-1.21.1-3.fc37.x86_64                          10/318 
  Verifying        : bluez-libs-5.65-2.fc38.x86_64                       11/318 
  Verifying        : bzip2-devel-1.0.8-12.fc37.x86_64                    12/318 
  Verifying        : cairo-1.17.6-2.fc37.x86_64                          13/318 
  Verifying        : cairo-gobject-1.17.6-2.fc37.x86_64                  14/318 
  Verifying        : catch-devel-2.13.8-3.fc37.x86_64                    15/318 
  Verifying        : cdparanoia-libs-10.2-40.fc37.x86_64                 16/318 
  Verifying        : cmake-3.24.1-1.fc38.x86_64                          17/318 
  Verifying        : cmake-data-3.24.1-1.fc38.noarch                     18/318 
  Verifying        : cmake-filesystem-3.24.1-1.fc38.x86_64               19/318 
  Verifying        : cmake-rpm-macros-3.24.1-1.fc38.noarch               20/318 
  Verifying        : cpp-12.2.1-1.fc38.x86_64                            21/318 
  Verifying        : crypto-policies-scripts-20220824-2.git2187e9c.fc    22/318 
  Verifying        : cups-libs-1:2.4.2-4.fc38.x86_64                     23/318 
  Verifying        : dbus-1:1.14.0-5.fc38.x86_64                         24/318 
  Verifying        : dbus-broker-32-1.fc37.x86_64                        25/318 
  Verifying        : dbus-common-1:1.14.0-5.fc38.noarch                  26/318 
  Verifying        : dbus-libs-1:1.14.0-5.fc38.x86_64                    27/318 
  Verifying        : desktop-file-utils-0.26-7.fc37.x86_64               28/318 
  Verifying        : emacs-filesystem-1:28.1-3.fc37.noarch               29/318 
  Verifying        : expat-2.4.8-2.fc37.x86_64                           30/318 
  Verifying        : fdk-aac-free-2.0.0-9.fc37.x86_64                    31/318 
  Verifying        : flac-libs-1.3.4-2.fc37.x86_64                       32/318 
  Verifying        : flexiblas-3.2.1-2.fc37.x86_64                       33/318 
  Verifying        : flexiblas-netlib-3.2.1-2.fc37.x86_64                34/318 
  Verifying        : flexiblas-openblas-openmp-3.2.1-2.fc37.x86_64       35/318 
  Verifying        : fontconfig-2.14.0-2.fc37.x86_64                     36/318 
  Verifying        : fonts-filesystem-1:2.0.5-9.fc38.noarch              37/318 
  Verifying        : freeglut-3.2.2-2.fc37.x86_64                        38/318 
  Verifying        : freeglut-devel-3.2.2-2.fc37.x86_64                  39/318 
  Verifying        : freetype-2.12.1-3.fc37.x86_64                       40/318 
  Verifying        : freetype-devel-2.12.1-3.fc37.x86_64                 41/318 
  Verifying        : fribidi-1.0.12-2.fc37.x86_64                        42/318 
  Verifying        : gc-8.0.6-4.fc37.x86_64                              43/318 
  Verifying        : gcc-12.2.1-1.fc38.x86_64                            44/318 
  Verifying        : gcc-c++-12.2.1-1.fc38.x86_64                        45/318 
  Verifying        : gcc-gfortran-12.2.1-1.fc38.x86_64                   46/318 
  Verifying        : gcc-plugin-annobin-12.2.1-1.fc38.x86_64             47/318 
  Verifying        : gdk-pixbuf2-2.42.9-1.fc38.x86_64                    48/318 
  Verifying        : gl-manpages-1.1-25.20190306.fc37.noarch             49/318 
  Verifying        : glew-devel-2.2.0-3.fc37.x86_64                      50/318 
  Verifying        : glib-networking-2.74~alpha-4.fc37.x86_64            51/318 
  Verifying        : glib2-2.73.3-2.fc38.x86_64                          52/318 
  Verifying        : glib2-devel-2.73.3-2.fc38.x86_64                    53/318 
  Verifying        : glibc-devel-2.36.9000-4.fc38.x86_64                 54/318 
  Verifying        : glibc-headers-x86-2.36.9000-4.fc38.noarch           55/318 
  Verifying        : glm-devel-0.9.9.8-4.fc37.noarch                     56/318 
  Verifying        : glx-utils-8.4.0-14.20210504git0f9e7d9.fc37.x86_6    57/318 
  Verifying        : gnutls-3.7.7-1.fc37.x86_64                          58/318 
  Verifying        : google-noto-fonts-common-20201206^1.git0c78c8329    59/318 
  Verifying        : google-noto-sans-vf-fonts-20201206^1.git0c78c832    60/318 
  Verifying        : graphene-1.10.6-4.fc37.x86_64                       61/318 
  Verifying        : graphite2-1.3.14-10.fc37.x86_64                     62/318 
  Verifying        : graphite2-devel-1.3.14-10.fc37.x86_64               63/318 
  Verifying        : groff-base-1.22.4-10.fc37.x86_64                    64/318 
  Verifying        : gsettings-desktop-schemas-43~alpha-4.fc37.x86_64    65/318 
  Verifying        : gsm-1.0.22-1.fc37.x86_64                            66/318 
  Verifying        : gssdp-1.4.0.1-3.fc37.x86_64                         67/318 
  Verifying        : gstreamer1-1.20.3-2.fc37.x86_64                     68/318 
  Verifying        : gstreamer1-plugins-bad-free-1.20.3-2.fc37.x86_64    69/318 
  Verifying        : gstreamer1-plugins-base-1.20.3-2.fc37.x86_64        70/318 
  Verifying        : guile22-2.2.7-6.fc37.x86_64                         71/318 
  Verifying        : gupnp-1.4.3-3.fc37.x86_64                           72/318 
  Verifying        : gupnp-igd-1.2.0-6.fc37.x86_64                       73/318 
  Verifying        : harfbuzz-5.1.0-2.fc37.x86_64                        74/318 
  Verifying        : harfbuzz-devel-5.1.0-2.fc37.x86_64                  75/318 
  Verifying        : harfbuzz-icu-5.1.0-2.fc37.x86_64                    76/318 
  Verifying        : hdf-libs-4.2.15-11.fc37.x86_64                      77/318 
  Verifying        : hdf5-1.12.1-10.fc37.x86_64                          78/318 
  Verifying        : hdf5-devel-1.12.1-10.fc37.x86_64                    79/318 
  Verifying        : hwdata-0.361-2.fc37.noarch                          80/318 
  Verifying        : iso-codes-4.11.0-1.fc37.noarch                      81/318 
  Verifying        : json-glib-1.6.6-3.fc37.x86_64                       82/318 
  Verifying        : jsoncpp-1.9.5-3.fc37.x86_64                         83/318 
  Verifying        : kernel-headers-6.0.0-0.rc3.git0.1.fc38.x86_64       84/318 
  Verifying        : langpacks-core-font-en-3.0-26.fc37.noarch           85/318 
  Verifying        : lcms2-2.13.1-2.fc37.x86_64                          86/318 
  Verifying        : libGLEW-2.2.0-3.fc37.x86_64                         87/318 
  Verifying        : libICE-1.0.10-9.fc37.x86_64                         88/318 
  Verifying        : libSM-1.2.3-11.fc37.x86_64                          89/318 
  Verifying        : libX11-1.8.1-2.fc38.x86_64                          90/318 
  Verifying        : libX11-common-1.8.1-2.fc38.noarch                   91/318 
  Verifying        : libX11-devel-1.8.1-2.fc38.x86_64                    92/318 
  Verifying        : libX11-xcb-1.8.1-2.fc38.x86_64                      93/318 
  Verifying        : libXau-1.0.10-1.fc38.x86_64                         94/318 
  Verifying        : libXau-devel-1.0.10-1.fc38.x86_64                   95/318 
  Verifying        : libXext-1.3.4-9.fc37.x86_64                         96/318 
  Verifying        : libXfixes-6.0.0-4.fc37.x86_64                       97/318 
  Verifying        : libXft-2.3.4-3.fc37.x86_64                          98/318 
  Verifying        : libXi-1.8-3.fc37.x86_64                             99/318 
  Verifying        : libXrender-0.9.10-17.fc37.x86_64                   100/318 
  Verifying        : libXv-1.0.11-17.fc37.x86_64                        101/318 
  Verifying        : libXxf86vm-1.1.4-19.fc37.x86_64                    102/318 
  Verifying        : libaec-1.0.6-3.fc37.x86_64                         103/318 
  Verifying        : libaec-devel-1.0.6-3.fc37.x86_64                   104/318 
  Verifying        : libappstream-glib-0.8.1-1.fc38.x86_64              105/318 
  Verifying        : libasyncns-0.8-23.fc37.x86_64                      106/318 
  Verifying        : libb2-0.98.1-7.fc37.x86_64                         107/318 
  Verifying        : libblkid-devel-2.38.1-2.fc38.x86_64                108/318 
  Verifying        : libcurl-devel-7.84.0-3.fc38.x86_64                 109/318 
  Verifying        : libdatrie-0.2.13-4.fc37.x86_64                     110/318 
  Verifying        : libdrm-2.4.112-1.fc38.x86_64                       111/318 
  Verifying        : libdrm-devel-2.4.112-1.fc38.x86_64                 112/318 
  Verifying        : libdvdnav-6.1.1-4.fc37.x86_64                      113/318 
  Verifying        : libdvdread-6.1.3-2.fc37.x86_64                     114/318 
  Verifying        : libevdev-1.13.0-1.fc37.x86_64                      115/318 
  Verifying        : libffi-devel-3.4.2-9.fc37.x86_64                   116/318 
  Verifying        : libgfortran-12.2.1-1.fc38.x86_64                   117/318 
  Verifying        : libglvnd-1:1.5.0-1.fc38.x86_64                     118/318 
  Verifying        : libglvnd-core-devel-1:1.5.0-1.fc38.x86_64          119/318 
  Verifying        : libglvnd-devel-1:1.5.0-1.fc38.x86_64               120/318 
  Verifying        : libglvnd-egl-1:1.5.0-1.fc38.x86_64                 121/318 
  Verifying        : libglvnd-gles-1:1.5.0-1.fc38.x86_64                122/318 
  Verifying        : libglvnd-glx-1:1.5.0-1.fc38.x86_64                 123/318 
  Verifying        : libglvnd-opengl-1:1.5.0-1.fc38.x86_64              124/318 
  Verifying        : libgudev-237-3.fc37.x86_64                         125/318 
  Verifying        : libicu-71.1-1.fc37.x86_64                          126/318 
  Verifying        : libicu-devel-71.1-1.fc37.x86_64                    127/318 
  Verifying        : libinput-1.21.0-3.fc38.x86_64                      128/318 
  Verifying        : libjpeg-turbo-2.1.4-1.fc38.x86_64                  129/318 
  Verifying        : libmount-devel-2.38.1-2.fc38.x86_64                130/318 
  Verifying        : libmpc-1.2.1-5.fc37.x86_64                         131/318 
  Verifying        : libnice-0.1.19-2.fc37.x86_64                       132/318 
  Verifying        : libogg-2:1.3.5-4.fc37.x86_64                       133/318 
  Verifying        : libpciaccess-0.16-7.fc37.x86_64                    134/318 
  Verifying        : libpciaccess-devel-0.16-7.fc37.x86_64              135/318 
  Verifying        : libpng-2:1.6.37-13.fc37.x86_64                     136/318 
  Verifying        : libpng-devel-2:1.6.37-13.fc37.x86_64               137/318 
  Verifying        : libproxy-0.4.18-3.fc37.x86_64                      138/318 
  Verifying        : libquadmath-12.2.1-1.fc38.x86_64                   139/318 
  Verifying        : libquadmath-devel-12.2.1-1.fc38.x86_64             140/318 
  Verifying        : librsvg2-2.54.5-1.fc38.x86_64                      141/318 
  Verifying        : libselinux-devel-3.4-5.fc37.x86_64                 142/318 
  Verifying        : libsepol-devel-3.4-3.fc37.x86_64                   143/318 
  Verifying        : libsndfile-1.1.0-3.fc37.x86_64                     144/318 
  Verifying        : libsoup-2.74.2-3.fc37.x86_64                       145/318 
  Verifying        : libsrtp-2.3.0-9.fc37.x86_64                        146/318 
  Verifying        : libstdc++-devel-12.2.1-1.fc38.x86_64               147/318 
  Verifying        : libstemmer-0-19.585svn.fc37.x86_64                 148/318 
  Verifying        : libthai-0.1.29-3.fc37.x86_64                       149/318 
  Verifying        : libtheora-1:1.1.1-32.fc37.x86_64                   150/318 
  Verifying        : libtool-ltdl-2.4.7-2.fc37.x86_64                   151/318 
  Verifying        : libunwind-1.6.2-3.fc37.x86_64                      152/318 
  Verifying        : libusb1-1.0.25-9.fc37.x86_64                       153/318 
  Verifying        : libuv-1:1.44.2-2.fc37.x86_64                       154/318 
  Verifying        : libva-2.15.0-2.fc37.x86_64                         155/318 
  Verifying        : libvisual-1:0.4.0-36.fc37.x86_64                   156/318 
  Verifying        : libvorbis-1:1.3.7-6.fc37.x86_64                    157/318 
  Verifying        : libwacom-2.4.0-1.fc37.x86_64                       158/318 
  Verifying        : libwacom-data-2.4.0-1.fc37.noarch                  159/318 
  Verifying        : libwayland-client-1.21.0-1.fc37.x86_64             160/318 
  Verifying        : libwayland-cursor-1.21.0-1.fc37.x86_64             161/318 
  Verifying        : libwayland-egl-1.21.0-1.fc37.x86_64                162/318 
  Verifying        : libwayland-server-1.21.0-1.fc37.x86_64             163/318 
  Verifying        : libwebp-1.2.4-1.fc37.x86_64                        164/318 
  Verifying        : libxcb-1.13.1-10.fc37.x86_64                       165/318 
  Verifying        : libxcb-devel-1.13.1-10.fc37.x86_64                 166/318 
  Verifying        : libxcrypt-devel-4.4.28-3.fc38.x86_64               167/318 
  Verifying        : libxkbcommon-1.4.1-2.fc37.x86_64                   168/318 
  Verifying        : libxkbcommon-x11-1.4.1-2.fc37.x86_64               169/318 
  Verifying        : libxml2-devel-2.9.14-3.fc37.x86_64                 170/318 
  Verifying        : libxshmfence-1.3-11.fc37.x86_64                    171/318 
  Verifying        : lilv-libs-0.24.14-3.fc37.x86_64                    172/318 
  Verifying        : make-1:4.3-11.fc37.x86_64                          173/318 
  Verifying        : mesa-filesystem-22.2.0~rc3-1.fc38.x86_64           174/318 
  Verifying        : mesa-libEGL-22.2.0~rc3-1.fc38.x86_64               175/318 
  Verifying        : mesa-libEGL-devel-22.2.0~rc3-1.fc38.x86_64         176/318 
  Verifying        : mesa-libGL-22.2.0~rc3-1.fc38.x86_64                177/318 
  Verifying        : mesa-libGL-devel-22.2.0~rc3-1.fc38.x86_64          178/318 
  Verifying        : mesa-libGLU-9.0.1-7.fc37.x86_64                    179/318 
  Verifying        : mesa-libGLU-devel-9.0.1-7.fc37.x86_64              180/318 
  Verifying        : mesa-libgbm-22.2.0~rc3-1.fc38.x86_64               181/318 
  Verifying        : mesa-libglapi-22.2.0~rc3-1.fc38.x86_64             182/318 
  Verifying        : mmtf-cpp-devel-1.0.0-11.fc37.x86_64                183/318 
  Verifying        : mpdecimal-2.5.1-4.fc37.x86_64                      184/318 
  Verifying        : msgpack-3.1.0-10.fc37.x86_64                       185/318 
  Verifying        : msgpack-devel-3.1.0-10.fc37.x86_64                 186/318 
  Verifying        : mtdev-1.1.6-4.fc37.x86_64                          187/318 
  Verifying        : ncurses-6.3-3.20220501.fc37.x86_64                 188/318 
  Verifying        : netcdf-4.9.0-3.fc37.x86_64                         189/318 
  Verifying        : netcdf-devel-4.9.0-3.fc37.x86_64                   190/318 
  Verifying        : nettle-3.8-2.fc37.x86_64                           191/318 
  Verifying        : nspr-4.34.0-3.fc37.x86_64                          192/318 
  Verifying        : nss-3.81.0-1.fc37.x86_64                           193/318 
  Verifying        : nss-softokn-3.81.0-1.fc37.x86_64                   194/318 
  Verifying        : nss-softokn-freebl-3.81.0-1.fc37.x86_64            195/318 
  Verifying        : nss-sysinit-3.81.0-1.fc37.x86_64                   196/318 
  Verifying        : nss-util-3.81.0-1.fc37.x86_64                      197/318 
  Verifying        : openal-soft-1.22.2-2.fc37.x86_64                   198/318 
  Verifying        : openblas-0.3.21-3.fc38.x86_64                      199/318 
  Verifying        : openblas-openmp-0.3.21-3.fc38.x86_64               200/318 
  Verifying        : opus-1.3.1-11.fc37.x86_64                          201/318 
  Verifying        : orc-0.4.31-8.fc37.x86_64                           202/318 
  Verifying        : pango-1.50.9-1.fc38.x86_64                         203/318 
  Verifying        : pcre2-devel-10.40-1.fc37.1.x86_64                  204/318 
  Verifying        : pcre2-utf16-10.40-1.fc37.1.x86_64                  205/318 
  Verifying        : pcre2-utf32-10.40-1.fc37.1.x86_64                  206/318 
  Verifying        : perl-Carp-1.52-489.fc37.noarch                     207/318 
  Verifying        : perl-Class-Struct-0.66-492.fc38.noarch             208/318 
  Verifying        : perl-DynaLoader-1.52-492.fc38.x86_64               209/318 
  Verifying        : perl-Encode-4:3.19-492.fc38.x86_64                 210/318 
  Verifying        : perl-English-1.11-492.fc38.noarch                  211/318 
  Verifying        : perl-Errno-1.36-492.fc38.x86_64                    212/318 
  Verifying        : perl-Exporter-5.77-489.fc37.noarch                 213/318 
  Verifying        : perl-Fcntl-1.15-492.fc38.x86_64                    214/318 
  Verifying        : perl-File-Basename-2.85-492.fc38.noarch            215/318 
  Verifying        : perl-File-Find-1.40-492.fc38.noarch                216/318 
  Verifying        : perl-File-Path-2.18-489.fc37.noarch                217/318 
  Verifying        : perl-File-Temp-1:0.231.100-489.fc37.noarch         218/318 
  Verifying        : perl-File-stat-1.12-492.fc38.noarch                219/318 
  Verifying        : perl-Getopt-Long-1:2.52-489.fc37.noarch            220/318 
  Verifying        : perl-Getopt-Std-1.13-492.fc38.noarch               221/318 
  Verifying        : perl-HTTP-Tiny-0.082-1.fc37.noarch                 222/318 
  Verifying        : perl-IO-1.50-492.fc38.x86_64                       223/318 
  Verifying        : perl-IPC-Open3-1.22-492.fc38.noarch                224/318 
  Verifying        : perl-MIME-Base64-3.16-489.fc37.x86_64              225/318 
  Verifying        : perl-POSIX-2.03-492.fc38.x86_64                    226/318 
  Verifying        : perl-PathTools-3.84-489.fc37.x86_64                227/318 
  Verifying        : perl-Pod-Escapes-1:1.07-489.fc37.noarch            228/318 
  Verifying        : perl-Pod-Perldoc-3.28.01-490.fc37.noarch           229/318 
  Verifying        : perl-Pod-Simple-1:3.43-490.fc37.noarch             230/318 
  Verifying        : perl-Pod-Usage-4:2.03-3.fc37.noarch                231/318 
  Verifying        : perl-Scalar-List-Utils-5:1.63-489.fc38.x86_64      232/318 
  Verifying        : perl-SelectSaver-1.02-492.fc38.noarch              233/318 
  Verifying        : perl-Socket-4:2.036-1.fc38.x86_64                  234/318 
  Verifying        : perl-Storable-1:3.26-489.fc37.x86_64               235/318 
  Verifying        : perl-Symbol-1.09-492.fc38.noarch                   236/318 
  Verifying        : perl-Term-ANSIColor-5.01-490.fc37.noarch           237/318 
  Verifying        : perl-Term-Cap-1.17-489.fc37.noarch                 238/318 
  Verifying        : perl-Text-ParseWords-3.31-489.fc37.noarch          239/318 
  Verifying        : perl-Text-Tabs+Wrap-2021.0814-489.fc37.noarch      240/318 
  Verifying        : perl-Time-Local-2:1.300-489.fc37.noarch            241/318 
  Verifying        : perl-constant-1.33-490.fc37.noarch                 242/318 
  Verifying        : perl-if-0.61.000-492.fc38.noarch                   243/318 
  Verifying        : perl-interpreter-4:5.36.0-492.fc38.x86_64          244/318 
  Verifying        : perl-libs-4:5.36.0-492.fc38.x86_64                 245/318 
  Verifying        : perl-mro-1.26-492.fc38.x86_64                      246/318 
  Verifying        : perl-overload-1.35-492.fc38.noarch                 247/318 
  Verifying        : perl-overloading-0.02-492.fc38.noarch              248/318 
  Verifying        : perl-parent-1:0.238-489.fc37.noarch                249/318 
  Verifying        : perl-podlators-1:4.14-489.fc37.noarch              250/318 
  Verifying        : perl-subs-1.04-492.fc38.noarch                     251/318 
  Verifying        : perl-vars-1.05-492.fc38.noarch                     252/318 
  Verifying        : pixman-0.40.0-6.fc37.x86_64                        253/318 
  Verifying        : pulseaudio-libs-16.1-1.fc37.x86_64                 254/318 
  Verifying        : pyproject-rpm-macros-1.3.3-1.fc38.noarch           255/318 
  Verifying        : python-pip-wheel-22.2.2-1.fc38.noarch              256/318 
  Verifying        : python-qt5-rpm-macros-5.15.6-7.fc37.noarch         257/318 
  Verifying        : python-rpm-macros-3.11-4.fc37.noarch               258/318 
  Verifying        : python3-3.11.0~rc1-2.fc38.x86_64                   259/318 
  Verifying        : python3-dbus-1.2.18-5.fc37.x86_64                  260/318 
  Verifying        : python3-devel-3.11.0~rc1-2.fc38.x86_64             261/318 
  Verifying        : python3-libs-3.11.0~rc1-2.fc38.x86_64              262/318 
  Verifying        : python3-mmtf-1.1.2-18.fc37.noarch                  263/318 
  Verifying        : python3-msgpack-1.0.4-3.fc37.x86_64                264/318 
  Verifying        : python3-packaging-21.3-7.fc38.noarch               265/318 
  Verifying        : python3-pyparsing-3.0.9-2.fc37.noarch              266/318 
  Verifying        : python3-pyqt5-sip-12.11.0-2.fc37.x86_64            267/318 
  Verifying        : python3-qt5-5.15.6-7.fc37.x86_64                   268/318 
  Verifying        : python3-qt5-base-5.15.6-7.fc37.x86_64              269/318 
  Verifying        : python3-qt5-devel-5.15.6-7.fc37.x86_64             270/318 
  Verifying        : python3-rpm-generators-13-2.fc37.noarch            271/318 
  Verifying        : python3-rpm-macros-3.11-4.fc37.noarch              272/318 
  Verifying        : python3-simplejson-3.17.6-4.fc37.x86_64            273/318 
  Verifying        : qt-settings-37.0-1.fc38.noarch                     274/318 
  Verifying        : qt5-qtbase-5.15.5-4.fc38.x86_64                    275/318 
  Verifying        : qt5-qtbase-common-5.15.5-4.fc38.noarch             276/318 
  Verifying        : qt5-qtbase-devel-5.15.5-4.fc38.x86_64              277/318 
  Verifying        : qt5-qtbase-gui-5.15.5-4.fc38.x86_64                278/318 
  Verifying        : qt5-qtconnectivity-5.15.5-2.fc37.x86_64            279/318 
  Verifying        : qt5-qtdeclarative-5.15.5-2.fc37.x86_64             280/318 
  Verifying        : qt5-qtlocation-5.15.5-3.fc37.x86_64                281/318 
  Verifying        : qt5-qtmultimedia-5.15.5-2.fc37.x86_64              282/318 
  Verifying        : qt5-qtsensors-5.15.5-2.fc37.x86_64                 283/318 
  Verifying        : qt5-qtserialport-5.15.5-2.fc37.x86_64              284/318 
  Verifying        : qt5-qtsvg-5.15.5-2.fc37.x86_64                     285/318 
  Verifying        : qt5-qttools-common-5.15.5-2.fc37.noarch            286/318 
  Verifying        : qt5-qttools-libs-designer-5.15.5-2.fc37.x86_64     287/318 
  Verifying        : qt5-qttools-libs-help-5.15.5-2.fc37.x86_64         288/318 
  Verifying        : qt5-qtwebchannel-5.15.5-2.fc37.x86_64              289/318 
  Verifying        : qt5-qtwebsockets-5.15.5-2.fc37.x86_64              290/318 
  Verifying        : qt5-qtx11extras-5.15.5-2.fc37.x86_64               291/318 
  Verifying        : qt5-qtxmlpatterns-5.15.5-2.fc37.x86_64             292/318 
  Verifying        : qt5-rpm-macros-5.15.5-2.fc37.noarch                293/318 
  Verifying        : rhash-1.4.2-3.fc37.x86_64                          294/318 
  Verifying        : serd-0.30.12-2.fc37.x86_64                         295/318 
  Verifying        : shared-mime-info-2.2-2.fc37.x86_64                 296/318 
  Verifying        : snappy-1.1.9-5.fc37.x86_64                         297/318 
  Verifying        : sord-0.16.10-1.fc37.x86_64                         298/318 
  Verifying        : soundtouch-2.3.1-3.fc37.x86_64                     299/318 
  Verifying        : sratom-0.6.10-2.fc37.x86_64                        300/318 
  Verifying        : sysprof-capture-devel-3.45.1-1.fc37.x86_64         301/318 
  Verifying        : valgrind-1:3.19.0-4.fc37.x86_64                    302/318 
  Verifying        : valgrind-devel-1:3.19.0-4.fc37.x86_64              303/318 
  Verifying        : vim-filesystem-2:9.0.327-1.fc38.noarch             304/318 
  Verifying        : vulkan-headers-1.3.224.0-1.fc38.noarch             305/318 
  Verifying        : vulkan-loader-1.3.224.0-1.fc38.x86_64              306/318 
  Verifying        : vulkan-loader-devel-1.3.224.0-1.fc38.x86_64        307/318 
  Verifying        : webrtc-audio-processing-0.3.1-9.fc37.x86_64        308/318 
  Verifying        : xcb-util-0.4.0-20.fc37.x86_64                      309/318 
  Verifying        : xcb-util-image-0.4.0-20.fc37.x86_64                310/318 
  Verifying        : xcb-util-keysyms-0.4.0-18.fc37.x86_64              311/318 
  Verifying        : xcb-util-renderutil-0.3.9-21.fc37.x86_64           312/318 
  Verifying        : xcb-util-wm-0.4.1-23.fc37.x86_64                   313/318 
  Verifying        : xkeyboard-config-2.36-2.fc37.noarch                314/318 
  Verifying        : xml-common-0.6.3-59.fc37.noarch                    315/318 
  Verifying        : xorg-x11-proto-devel-2022.2-2.fc38.noarch          316/318 
  Verifying        : xz-devel-5.2.6-1.fc38.x86_64                       317/318 
  Verifying        : zlib-devel-1.2.12-5.fc38.x86_64                    318/318 

Installed:
  alsa-lib-1.2.7.2-2.fc37.x86_64                                                
  annobin-docs-10.81-1.fc38.noarch                                              
  annobin-plugin-gcc-10.81-1.fc38.x86_64                                        
  avahi-libs-0.8-17.fc37.x86_64                                                 
  blosc-1.21.1-3.fc37.x86_64                                                    
  bluez-libs-5.65-2.fc38.x86_64                                                 
  brotli-1.0.9-9.fc38.x86_64                                                    
  brotli-devel-1.0.9-9.fc38.x86_64                                              
  bzip2-devel-1.0.8-12.fc37.x86_64                                              
  cairo-1.17.6-2.fc37.x86_64                                                    
  cairo-gobject-1.17.6-2.fc37.x86_64                                            
  catch-devel-2.13.8-3.fc37.x86_64                                              
  cdparanoia-libs-10.2-40.fc37.x86_64                                           
  cmake-3.24.1-1.fc38.x86_64                                                    
  cmake-data-3.24.1-1.fc38.noarch                                               
  cmake-filesystem-3.24.1-1.fc38.x86_64                                         
  cmake-rpm-macros-3.24.1-1.fc38.noarch                                         
  cpp-12.2.1-1.fc38.x86_64                                                      
  crypto-policies-scripts-20220824-2.git2187e9c.fc38.noarch                     
  cups-libs-1:2.4.2-4.fc38.x86_64                                               
  dbus-1:1.14.0-5.fc38.x86_64                                                   
  dbus-broker-32-1.fc37.x86_64                                                  
  dbus-common-1:1.14.0-5.fc38.noarch                                            
  dbus-libs-1:1.14.0-5.fc38.x86_64                                              
  desktop-file-utils-0.26-7.fc37.x86_64                                         
  emacs-filesystem-1:28.1-3.fc37.noarch                                         
  expat-2.4.8-2.fc37.x86_64                                                     
  fdk-aac-free-2.0.0-9.fc37.x86_64                                              
  flac-libs-1.3.4-2.fc37.x86_64                                                 
  flexiblas-3.2.1-2.fc37.x86_64                                                 
  flexiblas-netlib-3.2.1-2.fc37.x86_64                                          
  flexiblas-openblas-openmp-3.2.1-2.fc37.x86_64                                 
  fontconfig-2.14.0-2.fc37.x86_64                                               
  fonts-filesystem-1:2.0.5-9.fc38.noarch                                        
  freeglut-3.2.2-2.fc37.x86_64                                                  
  freeglut-devel-3.2.2-2.fc37.x86_64                                            
  freetype-2.12.1-3.fc37.x86_64                                                 
  freetype-devel-2.12.1-3.fc37.x86_64                                           
  fribidi-1.0.12-2.fc37.x86_64                                                  
  gc-8.0.6-4.fc37.x86_64                                                        
  gcc-12.2.1-1.fc38.x86_64                                                      
  gcc-c++-12.2.1-1.fc38.x86_64                                                  
  gcc-gfortran-12.2.1-1.fc38.x86_64                                             
  gcc-plugin-annobin-12.2.1-1.fc38.x86_64                                       
  gdk-pixbuf2-2.42.9-1.fc38.x86_64                                              
  gl-manpages-1.1-25.20190306.fc37.noarch                                       
  glew-devel-2.2.0-3.fc37.x86_64                                                
  glib-networking-2.74~alpha-4.fc37.x86_64                                      
  glib2-2.73.3-2.fc38.x86_64                                                    
  glib2-devel-2.73.3-2.fc38.x86_64                                              
  glibc-devel-2.36.9000-4.fc38.x86_64                                           
  glibc-headers-x86-2.36.9000-4.fc38.noarch                                     
  glm-devel-0.9.9.8-4.fc37.noarch                                               
  glx-utils-8.4.0-14.20210504git0f9e7d9.fc37.x86_64                             
  gnutls-3.7.7-1.fc37.x86_64                                                    
  google-noto-fonts-common-20201206^1.git0c78c8329-3.fc38.noarch                
  google-noto-sans-vf-fonts-20201206^1.git0c78c8329-3.fc38.noarch               
  graphene-1.10.6-4.fc37.x86_64                                                 
  graphite2-1.3.14-10.fc37.x86_64                                               
  graphite2-devel-1.3.14-10.fc37.x86_64                                         
  groff-base-1.22.4-10.fc37.x86_64                                              
  gsettings-desktop-schemas-43~alpha-4.fc37.x86_64                              
  gsm-1.0.22-1.fc37.x86_64                                                      
  gssdp-1.4.0.1-3.fc37.x86_64                                                   
  gstreamer1-1.20.3-2.fc37.x86_64                                               
  gstreamer1-plugins-bad-free-1.20.3-2.fc37.x86_64                              
  gstreamer1-plugins-base-1.20.3-2.fc37.x86_64                                  
  guile22-2.2.7-6.fc37.x86_64                                                   
  gupnp-1.4.3-3.fc37.x86_64                                                     
  gupnp-igd-1.2.0-6.fc37.x86_64                                                 
  harfbuzz-5.1.0-2.fc37.x86_64                                                  
  harfbuzz-devel-5.1.0-2.fc37.x86_64                                            
  harfbuzz-icu-5.1.0-2.fc37.x86_64                                              
  hdf-libs-4.2.15-11.fc37.x86_64                                                
  hdf5-1.12.1-10.fc37.x86_64                                                    
  hdf5-devel-1.12.1-10.fc37.x86_64                                              
  hwdata-0.361-2.fc37.noarch                                                    
  iso-codes-4.11.0-1.fc37.noarch                                                
  json-glib-1.6.6-3.fc37.x86_64                                                 
  jsoncpp-1.9.5-3.fc37.x86_64                                                   
  kernel-headers-6.0.0-0.rc3.git0.1.fc38.x86_64                                 
  langpacks-core-font-en-3.0-26.fc37.noarch                                     
  lcms2-2.13.1-2.fc37.x86_64                                                    
  libGLEW-2.2.0-3.fc37.x86_64                                                   
  libICE-1.0.10-9.fc37.x86_64                                                   
  libSM-1.2.3-11.fc37.x86_64                                                    
  libX11-1.8.1-2.fc38.x86_64                                                    
  libX11-common-1.8.1-2.fc38.noarch                                             
  libX11-devel-1.8.1-2.fc38.x86_64                                              
  libX11-xcb-1.8.1-2.fc38.x86_64                                                
  libXau-1.0.10-1.fc38.x86_64                                                   
  libXau-devel-1.0.10-1.fc38.x86_64                                             
  libXext-1.3.4-9.fc37.x86_64                                                   
  libXfixes-6.0.0-4.fc37.x86_64                                                 
  libXft-2.3.4-3.fc37.x86_64                                                    
  libXi-1.8-3.fc37.x86_64                                                       
  libXrender-0.9.10-17.fc37.x86_64                                              
  libXv-1.0.11-17.fc37.x86_64                                                   
  libXxf86vm-1.1.4-19.fc37.x86_64                                               
  libaec-1.0.6-3.fc37.x86_64                                                    
  libaec-devel-1.0.6-3.fc37.x86_64                                              
  libappstream-glib-0.8.1-1.fc38.x86_64                                         
  libasyncns-0.8-23.fc37.x86_64                                                 
  libb2-0.98.1-7.fc37.x86_64                                                    
  libblkid-devel-2.38.1-2.fc38.x86_64                                           
  libcurl-devel-7.84.0-3.fc38.x86_64                                            
  libdatrie-0.2.13-4.fc37.x86_64                                                
  libdrm-2.4.112-1.fc38.x86_64                                                  
  libdrm-devel-2.4.112-1.fc38.x86_64                                            
  libdvdnav-6.1.1-4.fc37.x86_64                                                 
  libdvdread-6.1.3-2.fc37.x86_64                                                
  libevdev-1.13.0-1.fc37.x86_64                                                 
  libffi-devel-3.4.2-9.fc37.x86_64                                              
  libgfortran-12.2.1-1.fc38.x86_64                                              
  libglvnd-1:1.5.0-1.fc38.x86_64                                                
  libglvnd-core-devel-1:1.5.0-1.fc38.x86_64                                     
  libglvnd-devel-1:1.5.0-1.fc38.x86_64                                          
  libglvnd-egl-1:1.5.0-1.fc38.x86_64                                            
  libglvnd-gles-1:1.5.0-1.fc38.x86_64                                           
  libglvnd-glx-1:1.5.0-1.fc38.x86_64                                            
  libglvnd-opengl-1:1.5.0-1.fc38.x86_64                                         
  libgudev-237-3.fc37.x86_64                                                    
  libicu-71.1-1.fc37.x86_64                                                     
  libicu-devel-71.1-1.fc37.x86_64                                               
  libinput-1.21.0-3.fc38.x86_64                                                 
  libjpeg-turbo-2.1.4-1.fc38.x86_64                                             
  libmount-devel-2.38.1-2.fc38.x86_64                                           
  libmpc-1.2.1-5.fc37.x86_64                                                    
  libnice-0.1.19-2.fc37.x86_64                                                  
  libogg-2:1.3.5-4.fc37.x86_64                                                  
  libpciaccess-0.16-7.fc37.x86_64                                               
  libpciaccess-devel-0.16-7.fc37.x86_64                                         
  libpng-2:1.6.37-13.fc37.x86_64                                                
  libpng-devel-2:1.6.37-13.fc37.x86_64                                          
  libproxy-0.4.18-3.fc37.x86_64                                                 
  libquadmath-12.2.1-1.fc38.x86_64                                              
  libquadmath-devel-12.2.1-1.fc38.x86_64                                        
  librsvg2-2.54.5-1.fc38.x86_64                                                 
  libselinux-devel-3.4-5.fc37.x86_64                                            
  libsepol-devel-3.4-3.fc37.x86_64                                              
  libsndfile-1.1.0-3.fc37.x86_64                                                
  libsoup-2.74.2-3.fc37.x86_64                                                  
  libsrtp-2.3.0-9.fc37.x86_64                                                   
  libstdc++-devel-12.2.1-1.fc38.x86_64                                          
  libstemmer-0-19.585svn.fc37.x86_64                                            
  libthai-0.1.29-3.fc37.x86_64                                                  
  libtheora-1:1.1.1-32.fc37.x86_64                                              
  libtool-ltdl-2.4.7-2.fc37.x86_64                                              
  libunwind-1.6.2-3.fc37.x86_64                                                 
  libusb1-1.0.25-9.fc37.x86_64                                                  
  libuv-1:1.44.2-2.fc37.x86_64                                                  
  libva-2.15.0-2.fc37.x86_64                                                    
  libvisual-1:0.4.0-36.fc37.x86_64                                              
  libvorbis-1:1.3.7-6.fc37.x86_64                                               
  libwacom-2.4.0-1.fc37.x86_64                                                  
  libwacom-data-2.4.0-1.fc37.noarch                                             
  libwayland-client-1.21.0-1.fc37.x86_64                                        
  libwayland-cursor-1.21.0-1.fc37.x86_64                                        
  libwayland-egl-1.21.0-1.fc37.x86_64                                           
  libwayland-server-1.21.0-1.fc37.x86_64                                        
  libwebp-1.2.4-1.fc37.x86_64                                                   
  libxcb-1.13.1-10.fc37.x86_64                                                  
  libxcb-devel-1.13.1-10.fc37.x86_64                                            
  libxcrypt-devel-4.4.28-3.fc38.x86_64                                          
  libxkbcommon-1.4.1-2.fc37.x86_64                                              
  libxkbcommon-x11-1.4.1-2.fc37.x86_64                                          
  libxml2-devel-2.9.14-3.fc37.x86_64                                            
  libxshmfence-1.3-11.fc37.x86_64                                               
  lilv-libs-0.24.14-3.fc37.x86_64                                               
  make-1:4.3-11.fc37.x86_64                                                     
  mesa-filesystem-22.2.0~rc3-1.fc38.x86_64                                      
  mesa-libEGL-22.2.0~rc3-1.fc38.x86_64                                          
  mesa-libEGL-devel-22.2.0~rc3-1.fc38.x86_64                                    
  mesa-libGL-22.2.0~rc3-1.fc38.x86_64                                           
  mesa-libGL-devel-22.2.0~rc3-1.fc38.x86_64                                     
  mesa-libGLU-9.0.1-7.fc37.x86_64                                               
  mesa-libGLU-devel-9.0.1-7.fc37.x86_64                                         
  mesa-libgbm-22.2.0~rc3-1.fc38.x86_64                                          
  mesa-libglapi-22.2.0~rc3-1.fc38.x86_64                                        
  mmtf-cpp-devel-1.0.0-11.fc37.x86_64                                           
  mpdecimal-2.5.1-4.fc37.x86_64                                                 
  msgpack-3.1.0-10.fc37.x86_64                                                  
  msgpack-devel-3.1.0-10.fc37.x86_64                                            
  mtdev-1.1.6-4.fc37.x86_64                                                     
  ncurses-6.3-3.20220501.fc37.x86_64                                            
  netcdf-4.9.0-3.fc37.x86_64                                                    
  netcdf-devel-4.9.0-3.fc37.x86_64                                              
  nettle-3.8-2.fc37.x86_64                                                      
  nspr-4.34.0-3.fc37.x86_64                                                     
  nss-3.81.0-1.fc37.x86_64                                                      
  nss-softokn-3.81.0-1.fc37.x86_64                                              
  nss-softokn-freebl-3.81.0-1.fc37.x86_64                                       
  nss-sysinit-3.81.0-1.fc37.x86_64                                              
  nss-util-3.81.0-1.fc37.x86_64                                                 
  openal-soft-1.22.2-2.fc37.x86_64                                              
  openblas-0.3.21-3.fc38.x86_64                                                 
  openblas-openmp-0.3.21-3.fc38.x86_64                                          
  opus-1.3.1-11.fc37.x86_64                                                     
  orc-0.4.31-8.fc37.x86_64                                                      
  pango-1.50.9-1.fc38.x86_64                                                    
  pcre2-devel-10.40-1.fc37.1.x86_64                                             
  pcre2-utf16-10.40-1.fc37.1.x86_64                                             
  pcre2-utf32-10.40-1.fc37.1.x86_64                                             
  perl-Carp-1.52-489.fc37.noarch                                                
  perl-Class-Struct-0.66-492.fc38.noarch                                        
  perl-DynaLoader-1.52-492.fc38.x86_64                                          
  perl-Encode-4:3.19-492.fc38.x86_64                                            
  perl-English-1.11-492.fc38.noarch                                             
  perl-Errno-1.36-492.fc38.x86_64                                               
  perl-Exporter-5.77-489.fc37.noarch                                            
  perl-Fcntl-1.15-492.fc38.x86_64                                               
  perl-File-Basename-2.85-492.fc38.noarch                                       
  perl-File-Find-1.40-492.fc38.noarch                                           
  perl-File-Path-2.18-489.fc37.noarch                                           
  perl-File-Temp-1:0.231.100-489.fc37.noarch                                    
  perl-File-stat-1.12-492.fc38.noarch                                           
  perl-Getopt-Long-1:2.52-489.fc37.noarch                                       
  perl-Getopt-Std-1.13-492.fc38.noarch                                          
  perl-HTTP-Tiny-0.082-1.fc37.noarch                                            
  perl-IO-1.50-492.fc38.x86_64                                                  
  perl-IPC-Open3-1.22-492.fc38.noarch                                           
  perl-MIME-Base64-3.16-489.fc37.x86_64                                         
  perl-POSIX-2.03-492.fc38.x86_64                                               
  perl-PathTools-3.84-489.fc37.x86_64                                           
  perl-Pod-Escapes-1:1.07-489.fc37.noarch                                       
  perl-Pod-Perldoc-3.28.01-490.fc37.noarch                                      
  perl-Pod-Simple-1:3.43-490.fc37.noarch                                        
  perl-Pod-Usage-4:2.03-3.fc37.noarch                                           
  perl-Scalar-List-Utils-5:1.63-489.fc38.x86_64                                 
  perl-SelectSaver-1.02-492.fc38.noarch                                         
  perl-Socket-4:2.036-1.fc38.x86_64                                             
  perl-Storable-1:3.26-489.fc37.x86_64                                          
  perl-Symbol-1.09-492.fc38.noarch                                              
  perl-Term-ANSIColor-5.01-490.fc37.noarch                                      
  perl-Term-Cap-1.17-489.fc37.noarch                                            
  perl-Text-ParseWords-3.31-489.fc37.noarch                                     
  perl-Text-Tabs+Wrap-2021.0814-489.fc37.noarch                                 
  perl-Time-Local-2:1.300-489.fc37.noarch                                       
  perl-constant-1.33-490.fc37.noarch                                            
  perl-if-0.61.000-492.fc38.noarch                                              
  perl-interpreter-4:5.36.0-492.fc38.x86_64                                     
  perl-libs-4:5.36.0-492.fc38.x86_64                                            
  perl-mro-1.26-492.fc38.x86_64                                                 
  perl-overload-1.35-492.fc38.noarch                                            
  perl-overloading-0.02-492.fc38.noarch                                         
  perl-parent-1:0.238-489.fc37.noarch                                           
  perl-podlators-1:4.14-489.fc37.noarch                                         
  perl-subs-1.04-492.fc38.noarch                                                
  perl-vars-1.05-492.fc38.noarch                                                
  pixman-0.40.0-6.fc37.x86_64                                                   
  pulseaudio-libs-16.1-1.fc37.x86_64                                            
  pyproject-rpm-macros-1.3.3-1.fc38.noarch                                      
  python-pip-wheel-22.2.2-1.fc38.noarch                                         
  python-qt5-rpm-macros-5.15.6-7.fc37.noarch                                    
  python-rpm-macros-3.11-4.fc37.noarch                                          
  python-setuptools-wheel-65.3.0-1.fc38.noarch                                  
  python3-3.11.0~rc1-2.fc38.x86_64                                              
  python3-dbus-1.2.18-5.fc37.x86_64                                             
  python3-devel-3.11.0~rc1-2.fc38.x86_64                                        
  python3-libs-3.11.0~rc1-2.fc38.x86_64                                         
  python3-mmtf-1.1.2-18.fc37.noarch                                             
  python3-msgpack-1.0.4-3.fc37.x86_64                                           
  python3-numpy-1:1.22.0-7.fc38.x86_64                                          
  python3-packaging-21.3-7.fc38.noarch                                          
  python3-pyparsing-3.0.9-2.fc37.noarch                                         
  python3-pyqt5-sip-12.11.0-2.fc37.x86_64                                       
  python3-qt5-5.15.6-7.fc37.x86_64                                              
  python3-qt5-base-5.15.6-7.fc37.x86_64                                         
  python3-qt5-devel-5.15.6-7.fc37.x86_64                                        
  python3-rpm-generators-13-2.fc37.noarch                                       
  python3-rpm-macros-3.11-4.fc37.noarch                                         
  python3-setuptools-65.3.0-1.fc38.noarch                                       
  python3-simplejson-3.17.6-4.fc37.x86_64                                       
  qt-settings-37.0-1.fc38.noarch                                                
  qt5-qtbase-5.15.5-4.fc38.x86_64                                               
  qt5-qtbase-common-5.15.5-4.fc38.noarch                                        
  qt5-qtbase-devel-5.15.5-4.fc38.x86_64                                         
  qt5-qtbase-gui-5.15.5-4.fc38.x86_64                                           
  qt5-qtconnectivity-5.15.5-2.fc37.x86_64                                       
  qt5-qtdeclarative-5.15.5-2.fc37.x86_64                                        
  qt5-qtlocation-5.15.5-3.fc37.x86_64                                           
  qt5-qtmultimedia-5.15.5-2.fc37.x86_64                                         
  qt5-qtsensors-5.15.5-2.fc37.x86_64                                            
  qt5-qtserialport-5.15.5-2.fc37.x86_64                                         
  qt5-qtsvg-5.15.5-2.fc37.x86_64                                                
  qt5-qttools-common-5.15.5-2.fc37.noarch                                       
  qt5-qttools-libs-designer-5.15.5-2.fc37.x86_64                                
  qt5-qttools-libs-help-5.15.5-2.fc37.x86_64                                    
  qt5-qtwebchannel-5.15.5-2.fc37.x86_64                                         
  qt5-qtwebsockets-5.15.5-2.fc37.x86_64                                         
  qt5-qtx11extras-5.15.5-2.fc37.x86_64                                          
  qt5-qtxmlpatterns-5.15.5-2.fc37.x86_64                                        
  qt5-rpm-macros-5.15.5-2.fc37.noarch                                           
  rhash-1.4.2-3.fc37.x86_64                                                     
  serd-0.30.12-2.fc37.x86_64                                                    
  shared-mime-info-2.2-2.fc37.x86_64                                            
  snappy-1.1.9-5.fc37.x86_64                                                    
  sord-0.16.10-1.fc37.x86_64                                                    
  soundtouch-2.3.1-3.fc37.x86_64                                                
  sratom-0.6.10-2.fc37.x86_64                                                   
  sysprof-capture-devel-3.45.1-1.fc37.x86_64                                    
  valgrind-1:3.19.0-4.fc37.x86_64                                               
  valgrind-devel-1:3.19.0-4.fc37.x86_64                                         
  vim-filesystem-2:9.0.327-1.fc38.noarch                                        
  vulkan-headers-1.3.224.0-1.fc38.noarch                                        
  vulkan-loader-1.3.224.0-1.fc38.x86_64                                         
  vulkan-loader-devel-1.3.224.0-1.fc38.x86_64                                   
  webrtc-audio-processing-0.3.1-9.fc37.x86_64                                   
  xcb-util-0.4.0-20.fc37.x86_64                                                 
  xcb-util-image-0.4.0-20.fc37.x86_64                                           
  xcb-util-keysyms-0.4.0-18.fc37.x86_64                                         
  xcb-util-renderutil-0.3.9-21.fc37.x86_64                                      
  xcb-util-wm-0.4.1-23.fc37.x86_64                                              
  xkeyboard-config-2.36-2.fc37.noarch                                           
  xml-common-0.6.3-59.fc37.noarch                                               
  xorg-x11-proto-devel-2022.2-2.fc38.noarch                                     
  xz-devel-5.2.6-1.fc38.x86_64                                                  
  zlib-devel-1.2.12-5.fc38.x86_64                                               

Complete!
Finish: build setup for pymol-2.5.0-5.fc38.src.rpm
Start: rpmbuild pymol-2.5.0-5.fc38.src.rpm
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1658448000
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.r0f6ys
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf pymol-open-source-2.5.0
+ /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/pymol-open-source-2.5.0.tar.gz
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd pymol-open-source-2.5.0
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/pymol-setup.py.patch
+ /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f
+ /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/pymol-wmclass-main.patch
+ /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f
+ /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/pymol-wmclass-pmgapp.patch
+ /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f
+ /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/pymol-mmtf.patch
+ /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f
+ /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/pymol-2.5.0-bug186.patch
+ /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f
+ ln -sr modules/web modules/pymol_web
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.4z660u
+ umask 022
+ cd /builddir/build/BUILD
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules'
+ export FCFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes'
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd pymol-open-source-2.5.0
+ export 'CXXFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
++ /usr/bin/getconf _NPROCESSORS_ONLN
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes'
+ /usr/bin/python3 setup.py build '--executable=/usr/bin/python3 -sP' --use-msgpackc=c++11 --use-openmp=yes --jobs 2
running build
running build_py
creating build/lib.linux-x86_64-cpython-311
creating build/lib.linux-x86_64-cpython-311/pymol2
copying modules/pymol2/cmd2.py -> build/lib.linux-x86_64-cpython-311/pymol2
copying modules/pymol2/__init__.py -> build/lib.linux-x86_64-cpython-311/pymol2
creating build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/xwin.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/xray.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/wizarding.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/viewing.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/vfont.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/util.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/shortcut_manager.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/shortcut_dict.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/shortcut.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/setting.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/seqalign.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/selector.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/selecting.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/save_shortcut.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/rpc.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/querying.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/pymolhttpd.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/preset.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/povray.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/parsing.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/parser.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/mpeg_encode.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/moving.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/movie.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/morphing.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/monitoring.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/menu.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/locking.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/lazyio.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/keywords.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/keyboard.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/invocation.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/internal.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/importing.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/helping.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/headering.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/gui.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/fitting.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/feedingback.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/externing.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/exporting.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/experimenting.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/editor.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/editing.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/diagnosing.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/creating.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/controlling.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/constants_palette.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/constants.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/computing.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/completing.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/commanding.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/colorramping.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/colorprinting.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/cmd.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/checking.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/cgo.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/callback.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/api.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/_gui.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/__main__.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/__init__.py -> build/lib.linux-x86_64-cpython-311/pymol
creating build/lib.linux-x86_64-cpython-311/pymol/wizard
copying modules/pymol/wizard/toggle.py -> build/lib.linux-x86_64-cpython-311/pymol/wizard
copying modules/pymol/wizard/stereodemo.py -> build/lib.linux-x86_64-cpython-311/pymol/wizard
copying modules/pymol/wizard/security.py -> build/lib.linux-x86_64-cpython-311/pymol/wizard
copying modules/pymol/wizard/sculpting.py -> build/lib.linux-x86_64-cpython-311/pymol/wizard
copying modules/pymol/wizard/renaming.py -> build/lib.linux-x86_64-cpython-311/pymol/wizard
copying modules/pymol/wizard/pseudoatom.py -> build/lib.linux-x86_64-cpython-311/pymol/wizard
copying modules/pymol/wizard/pair_fit.py -> build/lib.linux-x86_64-cpython-311/pymol/wizard
copying modules/pymol/wizard/openvr.py -> build/lib.linux-x86_64-cpython-311/pymol/wizard
copying modules/pymol/wizard/nucmutagenesis.py -> build/lib.linux-x86_64-cpython-311/pymol/wizard
copying modules/pymol/wizard/mutagenesis.py -> build/lib.linux-x86_64-cpython-311/pymol/wizard
copying modules/pymol/wizard/message.py -> build/lib.linux-x86_64-cpython-311/pymol/wizard
copying modules/pymol/wizard/measurement.py -> build/lib.linux-x86_64-cpython-311/pymol/wizard
copying modules/pymol/wizard/label.py -> build/lib.linux-x86_64-cpython-311/pymol/wizard
copying modules/pymol/wizard/filter.py -> build/lib.linux-x86_64-cpython-311/pymol/wizard
copying modules/pymol/wizard/dragging.py -> build/lib.linux-x86_64-cpython-311/pymol/wizard
copying modules/pymol/wizard/distance.py -> build/lib.linux-x86_64-cpython-311/pymol/wizard
copying modules/pymol/wizard/density.py -> build/lib.linux-x86_64-cpython-311/pymol/wizard
copying modules/pymol/wizard/demo.py -> build/lib.linux-x86_64-cpython-311/pymol/wizard
copying modules/pymol/wizard/command.py -> build/lib.linux-x86_64-cpython-311/pymol/wizard
copying modules/pymol/wizard/cleanup.py -> build/lib.linux-x86_64-cpython-311/pymol/wizard
copying modules/pymol/wizard/charge.py -> build/lib.linux-x86_64-cpython-311/pymol/wizard
copying modules/pymol/wizard/box.py -> build/lib.linux-x86_64-cpython-311/pymol/wizard
copying modules/pymol/wizard/benchmark.py -> build/lib.linux-x86_64-cpython-311/pymol/wizard
copying modules/pymol/wizard/appearance.py -> build/lib.linux-x86_64-cpython-311/pymol/wizard
copying modules/pymol/wizard/annotation.py -> build/lib.linux-x86_64-cpython-311/pymol/wizard
copying modules/pymol/wizard/__init__.py -> build/lib.linux-x86_64-cpython-311/pymol/wizard
creating build/lib.linux-x86_64-cpython-311/pymol/stereochemistry
copying modules/pymol/stereochemistry/__init__.py -> build/lib.linux-x86_64-cpython-311/pymol/stereochemistry
creating build/lib.linux-x86_64-cpython-311/pymol/plugins
copying modules/pymol/plugins/repository.py -> build/lib.linux-x86_64-cpython-311/pymol/plugins
copying modules/pymol/plugins/managergui_qt.py -> build/lib.linux-x86_64-cpython-311/pymol/plugins
copying modules/pymol/plugins/managergui.py -> build/lib.linux-x86_64-cpython-311/pymol/plugins
copying modules/pymol/plugins/legacysupport.py -> build/lib.linux-x86_64-cpython-311/pymol/plugins
copying modules/pymol/plugins/installation.py -> build/lib.linux-x86_64-cpython-311/pymol/plugins
copying modules/pymol/plugins/__init__.py -> build/lib.linux-x86_64-cpython-311/pymol/plugins
creating build/lib.linux-x86_64-cpython-311/pymol/Qt
copying modules/pymol/Qt/utils.py -> build/lib.linux-x86_64-cpython-311/pymol/Qt
copying modules/pymol/Qt/__init__.py -> build/lib.linux-x86_64-cpython-311/pymol/Qt
creating build/lib.linux-x86_64-cpython-311/pmg_tk
copying modules/pmg_tk/PMGApp.py -> build/lib.linux-x86_64-cpython-311/pmg_tk
copying modules/pmg_tk/volume.py -> build/lib.linux-x86_64-cpython-311/pmg_tk
copying modules/pmg_tk/__init__.py -> build/lib.linux-x86_64-cpython-311/pmg_tk
copying modules/pmg_tk/TextEditor.py -> build/lib.linux-x86_64-cpython-311/pmg_tk
copying modules/pmg_tk/Setting.py -> build/lib.linux-x86_64-cpython-311/pmg_tk
copying modules/pmg_tk/SetEditor.py -> build/lib.linux-x86_64-cpython-311/pmg_tk
copying modules/pmg_tk/PyMOLMapLoad.py -> build/lib.linux-x86_64-cpython-311/pmg_tk
copying modules/pmg_tk/Demo.py -> build/lib.linux-x86_64-cpython-311/pmg_tk
copying modules/pmg_tk/ColorEditor.py -> build/lib.linux-x86_64-cpython-311/pmg_tk
creating build/lib.linux-x86_64-cpython-311/pmg_tk/startup
copying modules/pmg_tk/startup/__init__.py -> build/lib.linux-x86_64-cpython-311/pmg_tk/startup
creating build/lib.linux-x86_64-cpython-311/pmg_tk/skins
copying modules/pmg_tk/skins/__init__.py -> build/lib.linux-x86_64-cpython-311/pmg_tk/skins
creating build/lib.linux-x86_64-cpython-311/pmg_tk/skins/normal
copying modules/pmg_tk/skins/normal/builder.py -> build/lib.linux-x86_64-cpython-311/pmg_tk/skins/normal
copying modules/pmg_tk/skins/normal/__init__.py -> build/lib.linux-x86_64-cpython-311/pmg_tk/skins/normal
copying modules/pmg_tk/skins/normal/ModalWindow.py -> build/lib.linux-x86_64-cpython-311/pmg_tk/skins/normal
creating build/lib.linux-x86_64-cpython-311/pmg_tk/skins/demo
copying modules/pmg_tk/skins/demo/__init__.py -> build/lib.linux-x86_64-cpython-311/pmg_tk/skins/demo
creating build/lib.linux-x86_64-cpython-311/pmg_qt
copying modules/pmg_qt/volume.py -> build/lib.linux-x86_64-cpython-311/pmg_qt
copying modules/pmg_qt/shortcut_menu_gui.py -> build/lib.linux-x86_64-cpython-311/pmg_qt
copying modules/pmg_qt/pymol_qt_gui.py -> build/lib.linux-x86_64-cpython-311/pmg_qt
copying modules/pmg_qt/pymol_gl_widget.py -> build/lib.linux-x86_64-cpython-311/pmg_qt
copying modules/pmg_qt/properties_dialog.py -> build/lib.linux-x86_64-cpython-311/pmg_qt
copying modules/pmg_qt/mimic_tk.py -> build/lib.linux-x86_64-cpython-311/pmg_qt
copying modules/pmg_qt/mimic_pmg_tk.py -> build/lib.linux-x86_64-cpython-311/pmg_qt
copying modules/pmg_qt/keymapping.py -> build/lib.linux-x86_64-cpython-311/pmg_qt
copying modules/pmg_qt/file_dialogs.py -> build/lib.linux-x86_64-cpython-311/pmg_qt
copying modules/pmg_qt/builder.py -> build/lib.linux-x86_64-cpython-311/pmg_qt
copying modules/pmg_qt/advanced_settings_gui.py -> build/lib.linux-x86_64-cpython-311/pmg_qt
copying modules/pmg_qt/__init__.py -> build/lib.linux-x86_64-cpython-311/pmg_qt
copying modules/pmg_qt/TextEditor.py -> build/lib.linux-x86_64-cpython-311/pmg_qt
creating build/lib.linux-x86_64-cpython-311/pmg_qt/syntax
copying modules/pmg_qt/syntax/python.py -> build/lib.linux-x86_64-cpython-311/pmg_qt/syntax
copying modules/pmg_qt/syntax/pmlparser.py -> build/lib.linux-x86_64-cpython-311/pmg_qt/syntax
copying modules/pmg_qt/syntax/pml.py -> build/lib.linux-x86_64-cpython-311/pmg_qt/syntax
copying modules/pmg_qt/syntax/__init__.py -> build/lib.linux-x86_64-cpython-311/pmg_qt/syntax
creating build/lib.linux-x86_64-cpython-311/pmg_qt/forms
copying modules/pmg_qt/forms/__init__.py -> build/lib.linux-x86_64-cpython-311/pmg_qt/forms
creating build/lib.linux-x86_64-cpython-311/chempy
copying modules/chempy/xyz.py -> build/lib.linux-x86_64-cpython-311/chempy
copying modules/chempy/water_residues.py -> build/lib.linux-x86_64-cpython-311/chempy
copying modules/chempy/water_amber.py -> build/lib.linux-x86_64-cpython-311/chempy
copying modules/chempy/solvate.py -> build/lib.linux-x86_64-cpython-311/chempy
copying modules/chempy/sdf.py -> build/lib.linux-x86_64-cpython-311/chempy
copying modules/chempy/protein_residues.py -> build/lib.linux-x86_64-cpython-311/chempy
copying modules/chempy/protein_mmff.py -> build/lib.linux-x86_64-cpython-311/chempy
copying modules/chempy/protein_amber99.py -> build/lib.linux-x86_64-cpython-311/chempy
copying modules/chempy/protein_amber.py -> build/lib.linux-x86_64-cpython-311/chempy
copying modules/chempy/protein.py -> build/lib.linux-x86_64-cpython-311/chempy
copying modules/chempy/place.py -> build/lib.linux-x86_64-cpython-311/chempy
copying modules/chempy/pkl.py -> build/lib.linux-x86_64-cpython-311/chempy
copying modules/chempy/pdb.py -> build/lib.linux-x86_64-cpython-311/chempy
copying modules/chempy/neighbor.py -> build/lib.linux-x86_64-cpython-311/chempy
copying modules/chempy/mol2.py -> build/lib.linux-x86_64-cpython-311/chempy
copying modules/chempy/mol.py -> build/lib.linux-x86_64-cpython-311/chempy
copying modules/chempy/models.py -> build/lib.linux-x86_64-cpython-311/chempy
copying modules/chempy/mmd.py -> build/lib.linux-x86_64-cpython-311/chempy
copying modules/chempy/mass.py -> build/lib.linux-x86_64-cpython-311/chempy
copying modules/chempy/map.py -> build/lib.linux-x86_64-cpython-311/chempy
copying modules/chempy/mae.py -> build/lib.linux-x86_64-cpython-311/chempy
copying modules/chempy/lst.py -> build/lib.linux-x86_64-cpython-311/chempy
copying modules/chempy/io.py -> build/lib.linux-x86_64-cpython-311/chempy
copying modules/chempy/hetatm.py -> build/lib.linux-x86_64-cpython-311/chempy
copying modules/chempy/gms.py -> build/lib.linux-x86_64-cpython-311/chempy
copying modules/chempy/gamess1.py -> build/lib.linux-x86_64-cpython-311/chempy
copying modules/chempy/dictdb.py -> build/lib.linux-x86_64-cpython-311/chempy
copying modules/chempy/cpv.py -> build/lib.linux-x86_64-cpython-311/chempy
copying modules/chempy/cif.py -> build/lib.linux-x86_64-cpython-311/chempy
copying modules/chempy/charge.py -> build/lib.linux-x86_64-cpython-311/chempy
copying modules/chempy/cc1.py -> build/lib.linux-x86_64-cpython-311/chempy
copying modules/chempy/brick.py -> build/lib.linux-x86_64-cpython-311/chempy
copying modules/chempy/bonds.py -> build/lib.linux-x86_64-cpython-311/chempy
copying modules/chempy/bond_mmff.py -> build/lib.linux-x86_64-cpython-311/chempy
copying modules/chempy/bond_amber.py -> build/lib.linux-x86_64-cpython-311/chempy
copying modules/chempy/arc.py -> build/lib.linux-x86_64-cpython-311/chempy
copying modules/chempy/__init__.py -> build/lib.linux-x86_64-cpython-311/chempy
creating build/lib.linux-x86_64-cpython-311/chempy/tinker
copying modules/chempy/tinker/state.py -> build/lib.linux-x86_64-cpython-311/chempy/tinker
copying modules/chempy/tinker/realtime.py -> build/lib.linux-x86_64-cpython-311/chempy/tinker
copying modules/chempy/tinker/keyword.py -> build/lib.linux-x86_64-cpython-311/chempy/tinker
copying modules/chempy/tinker/amber.py -> build/lib.linux-x86_64-cpython-311/chempy/tinker
copying modules/chempy/tinker/__init__.py -> build/lib.linux-x86_64-cpython-311/chempy/tinker
creating build/lib.linux-x86_64-cpython-311/chempy/mmtf
copying modules/chempy/mmtf/io.py -> build/lib.linux-x86_64-cpython-311/chempy/mmtf
copying modules/chempy/mmtf/__init__.py -> build/lib.linux-x86_64-cpython-311/chempy/mmtf
creating build/lib.linux-x86_64-cpython-311/chempy/fragments
copying modules/chempy/fragments/__init__.py -> build/lib.linux-x86_64-cpython-311/chempy/fragments
creating build/lib.linux-x86_64-cpython-311/chempy/fast
copying modules/chempy/fast/__init__.py -> build/lib.linux-x86_64-cpython-311/chempy/fast
creating build/lib.linux-x86_64-cpython-311/chempy/champ
copying modules/chempy/champ/formal_charges.py -> build/lib.linux-x86_64-cpython-311/chempy/champ
copying modules/chempy/champ/assign.py -> build/lib.linux-x86_64-cpython-311/chempy/champ
copying modules/chempy/champ/amber99.py -> build/lib.linux-x86_64-cpython-311/chempy/champ
copying modules/chempy/champ/__init__.py -> build/lib.linux-x86_64-cpython-311/chempy/champ
creating build/lib.linux-x86_64-cpython-311/chempy/bmin
copying modules/chempy/bmin/util.py -> build/lib.linux-x86_64-cpython-311/chempy/bmin
copying modules/chempy/bmin/state.py -> build/lib.linux-x86_64-cpython-311/chempy/bmin
copying modules/chempy/bmin/realtime.py -> build/lib.linux-x86_64-cpython-311/chempy/bmin
copying modules/chempy/bmin/commands.py -> build/lib.linux-x86_64-cpython-311/chempy/bmin
copying modules/chempy/bmin/__init__.py -> build/lib.linux-x86_64-cpython-311/chempy/bmin
copying modules/pmg_qt/forms/shortcut_menu.ui -> build/lib.linux-x86_64-cpython-311/pmg_qt/forms
copying modules/pmg_qt/forms/save_object.ui -> build/lib.linux-x86_64-cpython-311/pmg_qt/forms
copying modules/pmg_qt/forms/save_molecule.ui -> build/lib.linux-x86_64-cpython-311/pmg_qt/forms
copying modules/pmg_qt/forms/render.ui -> build/lib.linux-x86_64-cpython-311/pmg_qt/forms
copying modules/pmg_qt/forms/props.ui -> build/lib.linux-x86_64-cpython-311/pmg_qt/forms
copying modules/pmg_qt/forms/png.ui -> build/lib.linux-x86_64-cpython-311/pmg_qt/forms
copying modules/pmg_qt/forms/pluginmanager.ui -> build/lib.linux-x86_64-cpython-311/pmg_qt/forms
copying modules/pmg_qt/forms/pluginitem.ui -> build/lib.linux-x86_64-cpython-311/pmg_qt/forms
copying modules/pmg_qt/forms/movieexport.ui -> build/lib.linux-x86_64-cpython-311/pmg_qt/forms
copying modules/pmg_qt/forms/load_traj.ui -> build/lib.linux-x86_64-cpython-311/pmg_qt/forms
copying modules/pmg_qt/forms/load_mtz.ui -> build/lib.linux-x86_64-cpython-311/pmg_qt/forms
copying modules/pmg_qt/forms/load_map.ui -> build/lib.linux-x86_64-cpython-311/pmg_qt/forms
copying modules/pmg_qt/forms/load_mae.ui -> build/lib.linux-x86_64-cpython-311/pmg_qt/forms
copying modules/pmg_qt/forms/load_aln.ui -> build/lib.linux-x86_64-cpython-311/pmg_qt/forms
copying modules/pmg_qt/forms/help_shortcut.ui -> build/lib.linux-x86_64-cpython-311/pmg_qt/forms
copying modules/pmg_qt/forms/fetch.ui -> build/lib.linux-x86_64-cpython-311/pmg_qt/forms
copying modules/pmg_qt/forms/create_shortcut.ui -> build/lib.linux-x86_64-cpython-311/pmg_qt/forms
copying modules/pmg_qt/forms/colors.ui -> build/lib.linux-x86_64-cpython-311/pmg_qt/forms
copying modules/pmg_qt/forms/change_confirm.ui -> build/lib.linux-x86_64-cpython-311/pmg_qt/forms
copying modules/pmg_qt/forms/askpartial.ui -> build/lib.linux-x86_64-cpython-311/pmg_qt/forms
running build_ext
building 'pymol._cmd' extension
creating build/temp.linux-x86_64-cpython-311
creating build/temp.linux-x86_64-cpython-311/build
creating build/temp.linux-x86_64-cpython-311/build/generated
creating build/temp.linux-x86_64-cpython-311/contrib
creating build/temp.linux-x86_64-cpython-311/contrib/mmtf-c
creating build/temp.linux-x86_64-cpython-311/contrib/uiuc
creating build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins
creating build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin
creating build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src
creating build/temp.linux-x86_64-cpython-311/layer0
creating build/temp.linux-x86_64-cpython-311/layer1
creating build/temp.linux-x86_64-cpython-311/layer2
creating build/temp.linux-x86_64-cpython-311/layer3
creating build/temp.linux-x86_64-cpython-311/layer4
creating build/temp.linux-x86_64-cpython-311/layer5
creating build/temp.linux-x86_64-cpython-311/ov
creating build/temp.linux-x86_64-cpython-311/ov/src
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD build/generated/ShaderText.cpp -o build/temp.linux-x86_64-cpython-311/build/generated/ShaderText.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/jsplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/mmtf-c/mmtf_parser.cpp -o build/temp.linux-x86_64-cpython-311/contrib/mmtf-c/mmtf_parser.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In file included from contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c:79:
contrib/uiuc/plugins/molfile_plugin/src/fastio.h: In function ‘fio_readv’:
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:519:14: warning: comparison of integer expressions of different signedness: ‘fio_size_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  519 |       if (rc != iov[i].iov_len)
      |              ^~
In file included from contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c:89:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h: At top level:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: ‘swap8_unaligned’ defined but not used [-Wunused-function]
   65 | static void swap8_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: ‘swap4_unaligned’ defined but not used [-Wunused-function]
   46 | static void swap4_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘swap2_unaligned’ defined but not used [-Wunused-function]
   32 | static void swap2_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:459:19: warning: ‘fio_readv’ defined but not used [-Wunused-function]
  459 | static fio_size_t fio_readv(fio_fd fd, const fio_iovec * iov, int iovcnt) {
      |                   ^~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/mmtf-c/mmtf_parser.cpp: In function ‘bool MMTF_unpack_from_file(const char*, MMTF_container*)’:
contrib/mmtf-c/mmtf_parser.cpp:1075:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1075 |     fread(buffer, fileLen, 1, file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp: In function ‘int {anonymous}::write_structure(void*, int, const molfile_atom_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp:1904:9: warning: unused variable ‘last_ctnumber’ [-Wunused-variable]
 1904 |     int last_ctnumber = -1;
      |         ^~~~~~~~~~~~~
In file included from /usr/include/stdio.h:906,
                 from /usr/include/c++/12/cstdio:42,
                 from /usr/include/c++/12/ext/string_conversions.h:43,
                 from /usr/include/c++/12/bits/basic_string.h:3960,
                 from /usr/include/c++/12/string:53,
                 from /usr/include/c++/12/stdexcept:39,
                 from /usr/include/msgpack/v1/pack.hpp:15,
                 from /usr/include/msgpack/pack.hpp:15,
                 from /usr/include/msgpack/v1/object_decl.hpp:14,
                 from /usr/include/msgpack/object_decl.hpp:14,
                 from /usr/include/msgpack/object.hpp:13,
                 from /usr/include/msgpack.hpp:10,
                 from contrib/mmtf-c/mmtf_parser.cpp:41:
In function ‘fprintf’,
    inlined from ‘MMTF_parser_fetch_typed_array(msgpack::v2::object const*, unsigned long*, int)’ at contrib/mmtf-c/mmtf_parser.cpp:870:16:
/usr/include/bits/stdio2.h:79:24: warning: ‘typecheck’ may be used uninitialized [-Wmaybe-uninitialized]
   79 |   return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
      |          ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   80 |                         __va_arg_pack ());
      |                         ~~~~~~~~~~~~~~~~~
contrib/mmtf-c/mmtf_parser.cpp: In function ‘MMTF_parser_fetch_typed_array(msgpack::v2::object const*, unsigned long*, int)’:
contrib/mmtf-c/mmtf_parser.cpp:864:9: note: ‘typecheck’ was declared here
  864 |     int typecheck;
      |         ^~~~~~~~~
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c: In function ‘PlugIOManagerInitAll’:
contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c:271:1: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  271 | if(ok) ok = ok && (molfile_xyzplugin_init() == VMDPLUGIN_SUCCESS);
      | ^~
contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c:273:8: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  273 |        if(ok) {
      |        ^~
contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c: In function ‘PlugIOManagerFreeAll’:
contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c:411:1: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  411 | if(ok) ok = ok && (molfile_xyzplugin_fini() == VMDPLUGIN_SUCCESS);
      | ^~
contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c:413:8: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  413 |        return ok;
      |        ^~~~~~
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function ‘abinit_readline’:
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:279:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  279 |     for (i = 0; i < strlen(line); ++i) {
      |                   ^
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function ‘DEN_read_volumetric_data’:
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:970:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  970 |     fread(recordmarker, 1, data->hdr->bintype.recordmarker, data->file);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:971:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  971 |     fread(recordmarker, 1, data->hdr->bintype.recordmarker, data->file);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function ‘POT_read_volumetric_data’:
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:1113:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1113 |     fread(recordmarker, 1, data->hdr->bintype.recordmarker, data->file);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:1114:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1114 |     fread(recordmarker, 1, data->hdr->bintype.recordmarker, data->file);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function ‘abinit_header’:
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:1511:3: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1511 |   fread(skip, 1, 8, fp);
      |   ^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function ‘GEO_read_next_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:619:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  619 |     fscanf(data->file, "%*s %f %f %f", &x, &y, &z);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:70:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h: At top level:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: ‘get_pte_idx_from_string’ defined but not used [-Wunused-function]
  160 | static int get_pte_idx_from_string(const char *label) {
      |            ^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp: In member function ‘(anonymous namespace)::SitesArray::insert_row(std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > const&)’:
contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp:784:16: warning: ‘strncpy’ specified bound 32 equals destination size [-Wstringop-truncation]
  784 |         strncpy(arr, value.substr(1,value.size()-2).c_str(), N);
      |                ^
contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp:786:16: warning: ‘strncpy’ specified bound 32 equals destination size [-Wstringop-truncation]
  786 |         strncpy(arr, value.c_str(), N);
      |                ^
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/avsplugin.cpp -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/avsplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp: In member function ‘(anonymous namespace)::AtomArray::insert_row(std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > const&)’:
contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp:886:16: warning: ‘strncpy’ specified bound 16 equals destination size [-Wstringop-truncation]
  886 |         strncpy( a.name,
      |                ^
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.c -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In file included from contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.c:42:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function ‘angular_momentum_expon’:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:545:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  545 |   for (i=0; i<strlen(ang_mom_str); i++) {
      |              ^
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: At top level:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1097:13: warning: ‘whereami’ defined but not used [-Wunused-function]
 1097 | static void whereami(FILE *file) {
      |             ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1077:13: warning: ‘thisline’ defined but not used [-Wunused-function]
 1077 | static void thisline(FILE *file) {
      |             ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1028:12: warning: ‘fpexpftoc’ defined but not used [-Wunused-function]
 1028 | static int fpexpftoc(char *ftocstr) {
      |            ^~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1006:12: warning: ‘have_keyline’ defined but not used [-Wunused-function]
 1006 | static int have_keyline(FILE *file, const char *keystring1,
      |            ^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:962:12: warning: ‘goto_keyline’ defined but not used [-Wunused-function]
  962 | static int goto_keyline(FILE *file, ...) {
      |            ^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:901:14: warning: ‘strtoupper’ defined but not used [-Wunused-function]
  901 | static char *strtoupper(char *s) {
      |              ^~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:895:12: warning: ‘iswhiteline’ defined but not used [-Wunused-function]
  895 | static int iswhiteline(char *s) {
      |            ^~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:846:13: warning: ‘eatwhitelines’ defined but not used [-Wunused-function]
  846 | static void eatwhitelines(FILE *file) {
      |             ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:835:13: warning: ‘eatline’ defined but not used [-Wunused-function]
  835 | static void eatline(FILE * fd, int n)
      |             ^~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:711:12: warning: ‘symmetry_expand’ defined but not used [-Wunused-function]
  711 | static int symmetry_expand(qm_atom_t **atoms, int numunique, int natoms,
      |            ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:585:13: warning: ‘print_matrix4’ defined but not used [-Wunused-function]
  585 | static void print_matrix4(const float mat[16]) {
      |             ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:540:13: warning: ‘angular_momentum_expon’ defined but not used [-Wunused-function]
  540 | static void angular_momentum_expon(int  *ang_mom_expon,
      |             ^~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:507:13: warning: ‘del_wavefunction’ defined but not used [-Wunused-function]
  507 | static void del_wavefunction(qm_timestep_t *ts) {
      |             ^~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:490:13: warning: ‘replace_wavefunction’ defined but not used [-Wunused-function]
  490 | static void replace_wavefunction(qm_timestep_t *ts, int n) {
      |             ^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:471:27: warning: ‘add_wavefunction’ defined but not used [-Wunused-function]
  471 | static qm_wavefunction_t* add_wavefunction(qm_timestep_t *ts) {
      |                           ^~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:437:18: warning: ‘init_qmdata’ defined but not used [-Wunused-function]
  437 | static qmdata_t* init_qmdata() {
      |                  ^~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function ‘int read_bgf_timestep(void*, int, molfile_timestep_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:243:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  243 |     fgets(line, LINESIZE, bgf->file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:252:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  252 |     fgets(line, LINESIZE, bgf->file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function ‘int read_bgf_bonds_aux(void*, int*, int**, int**, float**)’:
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:328:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  328 |     fgets(line, LINESIZE, bgf->file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:346:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  346 |   fgets(line, LINESIZE, bgf->file);
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:355:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  355 |     fgets(nextline, LINESIZE, bgf->file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:419:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  419 |         fgets(line, LINESIZE, bgf->file);
      |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function ‘int read_bgf_structure(void*, int*, molfile_atom_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:194:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  194 |     fgets(line, LINESIZE, bgf->file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:203:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  203 |     fgets(line, LINESIZE, bgf->file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function ‘void* open_bgf_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:59:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   59 |     fgets(line, LINESIZE, fd);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function ‘read_bgf_timestep(void*, int, molfile_timestep_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:120:12: warning: ‘strncpy’ output may be truncated copying 10 bytes from a string of length 224 [-Wstringop-truncation]
  120 |     strncpy(numstr, record + 31, 10);
      |            ^
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:125:12: warning: ‘strncpy’ output may be truncated copying 10 bytes from a string of length 214 [-Wstringop-truncation]
  125 |     strncpy(numstr+10, record + 41, 10);
      |            ^
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:130:12: warning: ‘strncpy’ output may be truncated copying 10 bytes from a string of length 204 [-Wstringop-truncation]
  130 |     strncpy(numstr+20, record + 51, 10);
      |            ^
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function ‘read_bgf_structure(void*, int*, molfile_atom_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:144:10: warning: ‘strncpy’ output may be truncated copying 5 bytes from a string of length 242 [-Wstringop-truncation]
  144 |   strncpy(name, record + 13, 5);
      |          ^
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:149:10: warning: ‘strncpy’ output may be truncated copying 4 bytes from a string of length 236 [-Wstringop-truncation]
  149 |   strncpy(resname, record + 19, 4);
      |          ^
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:167:10: warning: ‘strncpy’ output may be truncated copying 5 bytes from a string of length 194 [-Wstringop-truncation]
  167 |   strncpy(type, record+61, 5);
      |          ^
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/binposplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c: In function ‘open_binpos_read’:
contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c:64:3: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   64 |   fread(magicchar,sizeof(char),4,fd);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c:72:3: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   72 |   fread(&igarb,sizeof(int),1,fd);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.cpp -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp: In function ‘int read_brix_data(void*, int, float*, float*)’:
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:247:14: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  247 |         fread(brick, sizeof(char), 512, fd);
      |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp: In function ‘void* open_brix_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:79:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   79 |   fscanf(fd, "%3s", keyWord);
      |   ~~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:86:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   86 |   fscanf(fd, " %s %d %d %d", keyWord, &org_x, &org_y, &org_z);
      |   ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:93:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   93 |   fscanf(fd, " %s %d %d %d", keyWord, &ext_x, &ext_y, &ext_z);
      |   ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:100:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  100 |   fscanf(fd, " %s %f %f %f", keyWord, &grid_x, &grid_y, &grid_z);
      |   ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:109:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  109 |   fscanf(fd, " %s %f %f %f %f %f %f", keyWord,
      |   ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  110 |          &cell_x, &cell_y, &cell_z, &cell_alpha, &cell_beta, &cell_gamma);
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:123:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  123 |   fscanf(fd, " %s %f", keyWord, &prod);
      |   ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:128:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  128 |   fscanf(fd, " %s %f", keyWord, &plus);
      |   ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:135:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  135 |   fscanf(fd, " %s %f", keyWord, &sigma);
      |   ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/carplugin.c -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/carplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function ‘read_car_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:326:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  326 |     fgets(line, LINESIZE, data->file);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:339:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  339 |     fgets(line, LINESIZE, data->file);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:344:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  344 |     fgets(line, LINESIZE, data->file);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:349:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  349 |   fgets(line, LINESIZE, data->file);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:363:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  363 |       fgets(line, LINESIZE, data->file);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:373:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  373 |     fgets(line, LINESIZE, data->file);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function ‘read_car_structure’:
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:266:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  266 |     fgets(line, LINESIZE, data->file);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:268:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  268 |     fgets(line, LINESIZE, data->file);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:272:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  272 |   fgets(line, LINESIZE, data->file);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:295:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  295 |       fgets(line, LINESIZE, data->file);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:305:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  305 |     fgets(line, LINESIZE, data->file);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function ‘open_car_read’:
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:169:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  169 |   fgets(line, LINESIZE, fd);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:179:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  179 |   fgets(line, LINESIZE, fd);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:182:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  182 |     fgets(line, LINESIZE, fd);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:210:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  210 |   fgets(line, LINESIZE, fd);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:213:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  213 |   fgets(line, LINESIZE, fd);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:224:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  224 |     fgets(line, LINESIZE, fd);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:226:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  226 |     fgets(line, LINESIZE, fd);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:230:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  230 |   fgets(line, LINESIZE, fd);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:234:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  234 |       fgets(line, LINESIZE, fd);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:245:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  245 |     fgets(line, LINESIZE, fd);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function ‘read_car_structure’:
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:127:29: warning: ‘%d’ directive writing between 1 and 11 bytes into a region of size 8 [-Wformat-overflow=]
  127 |     sprintf(atom->resname, "%d", resid);
      |                             ^~
In function ‘read_car_structure_line’,
    inlined from ‘read_car_structure’ at contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:277:12:
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:127:28: note: directive argument in the range [-2147483648, 9999999]
  127 |     sprintf(atom->resname, "%d", resid);
      |                            ^~~~
In file included from /usr/include/stdio.h:906,
                 from contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:85:
In function ‘sprintf’,
    inlined from ‘read_car_structure_line’ at contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:127:5,
    inlined from ‘read_car_structure’ at contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:277:12:
/usr/include/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 2 and 12 bytes into a destination of size 8
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp: In function ‘int read_ccp4_data(void*, int, float*, float*)’:
contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:495:58: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  495 |         if ( fread(rowdata, sizeof(char), extent[0], fd) != extent[0] ) {
      |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:525:67: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  525 |         if ( fread(rowdata, sizeof(unsigned char), extent[0], fd) != extent[0] ) {
      |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:556:58: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  556 |         if (fread(rowdata, sizeof(float), extent[0], fd) != extent[0] ) {
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:588:58: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  588 |         if (fread(rowdata, sizeof(short), extent[0], fd) != extent[0] ) {
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:623:67: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  623 |         if (fread(rowdata, sizeof(unsigned short), extent[0], fd) != extent[0] ) {
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:655:60: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  655 |         if ( fread(rowdata, sizeof(uchar3), extent[0], fd) != extent[0] ) {
      |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp: In function ‘void* open_ccp4_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:304:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  304 |       fgets(symData, 81, fd);
      |       ~~~~~^~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:42:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h: At global scope:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: ‘void swap8_aligned(void*, long int)’ defined but not used [-Wunused-function]
  124 | static void swap8_aligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: ‘void swap8_unaligned(void*, long int)’ defined but not used [-Wunused-function]
   65 | static void swap8_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: ‘void swap4_unaligned(void*, long int)’ defined but not used [-Wunused-function]
   46 | static void swap4_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘void swap2_unaligned(void*, long int)’ defined but not used [-Wunused-function]
   32 | static void swap2_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp: In function ‘(anonymous namespace)::read_structure(void*, int*, molfile_atom_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp:1786:22: warning: ‘strncpy’ specified bound 16 equals destination size [-Wstringop-truncation]
 1786 |               strncpy( ct.particles[to].type, v->second.funct.c_str(),
      |                      ^
contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp: In function ‘open_ccp4_read(char const*, char const*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:287:42: warning: ‘dataOffset’ may be used uninitialized [-Wmaybe-uninitialized]
  287 |     } else if ((dataOffset > CCP4HDSIZE) && (dataOffset < (1024*1024))) {
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:89:8: note: ‘dataOffset’ was declared here
   89 |   long dataOffset, filesize;
      |        ^~~~~~~~~~
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/corplugin.c -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/corplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/crdplugin.c -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/crdplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp: In function ‘void* open_cube_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:175:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  175 |   fgets(readbuf, 1023, cube->fd);    // go on to next line
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:181:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  181 |   fgets(readbuf, 1023, cube->fd); // skip second header line
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:326:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  326 |       fgets(readbuf, 1023, cube->fd);
      |       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:337:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  337 |       fgets(readbuf, 1023, cube->fd);
      |       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:339:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  339 |     fscanf(cube->fd, "%d", &cube->nsets);
      |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:344:13: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  344 |       fscanf(cube->fd, "%d", &orb);
      |       ~~~~~~^~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:349:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  349 |     fgets(readbuf, 1023, cube->fd);  // gobble up rest of line
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp: At global scope:
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:107:13: warning: ‘void cube_buildrotmat(cube_t*, float*, float*, float*)’ defined but not used [-Wunused-function]
  107 | static void cube_buildrotmat(cube_t *cube, float *o, float *a, float *b)
      |             ^~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:42:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: ‘int get_pte_idx_from_string(const char*)’ defined but not used [-Wunused-function]
  160 | static int get_pte_idx_from_string(const char *label) {
      |            ^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:133:12: warning: ‘int get_pte_idx(const char*)’ defined but not used [-Wunused-function]
  133 | static int get_pte_idx(const char *label)
      |            ^~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp: In function ‘open_cube_read(char const*, char const*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:179:10: warning: ‘__strncat_chk’ output may be truncated copying 240 bytes from a string of length 1023 [-Wstringop-truncation]
  179 |   strncat(voltmpl.dataname, readbuf, 240);      // 240 is max space left after
      |          ^
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/mapplugin.cpp -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/mapplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In file included from contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:51:
contrib/uiuc/plugins/molfile_plugin/src/fastio.h: In function ‘fio_readv’:
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:519:14: warning: comparison of integer expressions of different signedness: ‘fio_size_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  519 |       if (rc != iov[i].iov_len)
      |              ^~
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c: In function ‘read_dcdheader’:
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:191:57: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  191 |   } else if (input_integer[0] == 84 && input_integer[1] == dcdcordmagic) {
      |                                                         ^~
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:204:54: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  204 |       if (input_integer[0] == 84 && input_integer[1] == dcdcordmagic) {
      |                                                      ^~
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:222:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  222 |     if (input_integer[0] != dcdcordmagic) {
      |                          ^~
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:399:45: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  399 |     if ((input_integer[0]+input_integer[1]) != ((*N)-(*NAMNF))*4) {
      |                                             ^~
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:416:45: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  416 |     if ((input_integer[0]+input_integer[1]) != ((*N)-(*NAMNF))*4) {
      |                                             ^~
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c: In function ‘read_dcdstep’:
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:621:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
  621 |         if (tmpbuf[i] != sizeof(float)*N) return DCD_BADFORMAT;
      |                       ^~
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:625:43: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
  625 |           if ((tmpbuf[2*i]+tmpbuf[2*i+1]) != sizeof(float)*N) return DCD_BADFORMAT;
      |                                           ^~
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:546:16: warning: variable ‘readlen’ set but not used [-Wunused-but-set-variable]
  546 |     fio_size_t readlen; /* number of bytes actually read            */
      |                ^~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:60:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h: At top level:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: ‘swap2_aligned’ defined but not used [-Wunused-function]
   96 | static void swap2_aligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘swap2_unaligned’ defined but not used [-Wunused-function]
   32 | static void swap2_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:609:12: warning: ‘fio_write_str’ defined but not used [-Wunused-function]
  609 | static int fio_write_str(fio_fd fd, const char *str) {
      |            ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:605:12: warning: ‘fio_read_int32’ defined but not used [-Wunused-function]
  605 | static int fio_read_int32(fio_fd fd, int *i) {
      |            ^~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:459:19: warning: ‘fio_readv’ defined but not used [-Wunused-function]
  459 | static fio_size_t fio_readv(fio_fd fd, const fio_iovec * iov, int iovcnt) {
      |                   ^~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp: In function ‘int read_mdf_bonds(void*, int*, int**, int**, float**, int**, int*, char***)’:
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:278:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  278 |     fgets(line, LINESIZE, mdf->file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:297:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  297 |       fgets(line, LINESIZE, mdf->file);
      |       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:319:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  319 |     fgets(line, LINESIZE, mdf->file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:357:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  357 |       fgets(line, LINESIZE, mdf->file);
      |       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp: In function ‘int read_mdf_structure(void*, int*, molfile_atom_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:223:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  223 |     fgets(line, LINESIZE, mdf->file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:241:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  241 |       fgets(line, LINESIZE, mdf->file);
      |       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp: In function ‘void* open_mdf_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:164:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  164 |     fgets(line, LINESIZE, fd);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:176:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  176 |     fgets(line, LINESIZE, fd);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:183:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  183 |       fgets(line, LINESIZE, fd);
      |       ~~~~~^~~~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function ‘int read_mol2_timestep(void*, int, molfile_timestep_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:275:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  275 |     fgets(line, LINESIZE, mol2->file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:289:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  289 |     fgets(line, LINESIZE, mol2->file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function ‘int read_mol2_bonds_aux(void*, int*, int**, int**, float**)’:
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:199:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  199 |     fgets(line, LINESIZE, mol2->file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:209:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  209 |     fgets(line, LINESIZE, mol2->file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function ‘int read_mol2(void*, int*, molfile_atom_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:127:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  127 |     fgets(line, LINESIZE, mol2->file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:138:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  138 |     fgets(line, LINESIZE, mol2->file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function ‘void* open_mol2_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:74:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   74 |     fgets(line, LINESIZE, fd);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:81:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   81 |   fgets(line, LINESIZE, fd);  // Read and ignore the mol_name
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:82:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   82 |   fgets(line, LINESIZE, fd);  // Read the molecule info
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:91:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   91 |   fgets(line, LINESIZE, fd);  // Read and ignore the mol_type
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:92:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   92 |   fgets(line, LINESIZE, fd);  // Read the charge_type
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c: In function ‘read_dlpoly_config_structure’:
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:292:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  292 |   if (NULL == fgets(fbuffer, 1024, data->file))
      |   ^~
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:295:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  295 |     if (NULL == fgets(fbuffer, 1024, data->file))
      |     ^~
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c: In function ‘read_dlpoly_config_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:669:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  669 |   fgets(fbuffer, 1024, data->file);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c: In function ‘read_dlpoly_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:554:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  554 |   fgets(fbuffer, 1024, data->file);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c: In function ‘read_dlpoly_config_structure’:
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:362:5: warning: ‘strncpy’ output may be truncated copying 16 bytes from a string of length 4095 [-Wstringop-truncation]
  362 |     strncpy(atom->name, buf, sizeof(atom->name));
      |     ^
In file included from contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:49:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function ‘angular_momentum_expon’:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:545:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  545 |   for (i=0; i<strlen(ang_mom_str); i++) {
      |              ^
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c: In function ‘read_molden_rundata’:
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:596:25: warning: variable ‘hessian_data’ set but not used [-Wunused-but-set-variable]
  596 |   molfile_qm_hessian_t *hessian_data;
      |                         ^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c: In function ‘count_orbitals’:
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:1165:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1165 |   fscanf(data->file, " Ene= %f\n", &orbenergy);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:1166:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1166 |   fscanf(data->file, " Spin= %s\n", spin);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:1167:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1167 |   fscanf(data->file, " Occup= %f\n", &occu);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function ‘eatline’:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:840:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  840 |     fgets(readbuf, 1024, fd);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c: In function ‘open_molden_read’:
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:224:11: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  224 |           fscanf(data->file, "%d", &natm);
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: At top level:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1097:13: warning: ‘whereami’ defined but not used [-Wunused-function]
 1097 | static void whereami(FILE *file) {
      |             ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1077:13: warning: ‘thisline’ defined but not used [-Wunused-function]
 1077 | static void thisline(FILE *file) {
      |             ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1006:12: warning: ‘have_keyline’ defined but not used [-Wunused-function]
 1006 | static int have_keyline(FILE *file, const char *keystring1,
      |            ^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:711:12: warning: ‘symmetry_expand’ defined but not used [-Wunused-function]
  711 | static int symmetry_expand(qm_atom_t **atoms, int numunique, int natoms,
      |            ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:585:13: warning: ‘print_matrix4’ defined but not used [-Wunused-function]
  585 | static void print_matrix4(const float mat[16]) {
      |             ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:507:13: warning: ‘del_wavefunction’ defined but not used [-Wunused-function]
  507 | static void del_wavefunction(qm_timestep_t *ts) {
      |             ^~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:490:13: warning: ‘replace_wavefunction’ defined but not used [-Wunused-function]
  490 | static void replace_wavefunction(qm_timestep_t *ts, int n) {
      |             ^~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:48:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:133:12: warning: ‘get_pte_idx’ defined but not used [-Wunused-function]
  133 | static int get_pte_idx(const char *label)
      |            ^~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:109:14: warning: ‘get_pte_vdw_radius’ defined but not used [-Wunused-function]
  109 | static float get_pte_vdw_radius(const int idx)
      |              ^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:102:14: warning: ‘get_pte_mass’ defined but not used [-Wunused-function]
  102 | static float get_pte_mass(const int idx)
      |              ^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:95:20: warning: ‘get_pte_label’ defined but not used [-Wunused-function]
   95 | static const char *get_pte_label(const int idx)
      |                    ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c: In function ‘read_dlpoly_structure’:
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:267:5: warning: ‘strncpy’ output may be truncated copying 16 bytes from a string of length 4095 [-Wstringop-truncation]
  267 |     strncpy(atom->name, buf, sizeof(atom->name));
      |     ^
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp: In function ‘int read_dsn6_data(void*, int, float*, float*)’:
contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp:233:14: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  233 |         fread(brick, sizeof(char), 512, fd);
      |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp: In function ‘void* open_dsn6_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp:91:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   91 |   fread(fileHeader, sizeof(short), 19, fd);
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp:63:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h: At global scope:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: ‘void swap8_aligned(void*, long int)’ defined but not used [-Wunused-function]
  124 | static void swap8_aligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:110:13: warning: ‘void swap4_aligned(void*, long int)’ defined but not used [-Wunused-function]
  110 | static void swap4_aligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: ‘void swap8_unaligned(void*, long int)’ defined but not used [-Wunused-function]
   65 | static void swap8_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: ‘void swap4_unaligned(void*, long int)’ defined but not used [-Wunused-function]
   46 | static void swap4_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c: In function ‘read_molden_structure’:
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:350:7: warning: ‘strncpy’ output may be truncated copying 16 bytes from a string of length 1023 [-Wstringop-truncation]
  350 |       strncpy(atom->type, atname, sizeof(atom->type));
      |       ^
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:351:7: warning: ‘strncpy’ output may be truncated copying 16 bytes from a string of length 1023 [-Wstringop-truncation]
  351 |       strncpy(atom->name, atname, sizeof(atom->name));
      |       ^
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:317:7: warning: ‘strncpy’ output may be truncated copying 16 bytes from a string of length 1023 [-Wstringop-truncation]
  317 |       strncpy(atom->name, atname,     sizeof(atom->name));
      |       ^
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:326:7: warning: ‘strncpy’ output may be truncated copying 11 bytes from a string of length 1023 [-Wstringop-truncation]
  326 |       strncpy(data->atoms[i].type, atname, sizeof(data->atoms[i].type));
      |       ^
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp: In function ‘int read_rawgraphics(void*, int*, const molfile_graphics_t**)’:
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:91:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   91 |     fgets(line, 80, infile);
      |     ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:116:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  116 |     fgets(line, 80, infile);
      |     ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:132:9: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  132 |    fgets(line, 80, infile);
      |    ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:149:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  149 |      fgets(line, 80, infile);
      |      ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:155:20: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  155 |               fgets(line, 80, infile);
      |               ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:161:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  161 |      fgets(line, 80, infile); //one more read to keep us in sync
      |      ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:170:27: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  170 |                      fgets(line, 80, infile);
      |                      ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:217:15: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  217 |          fgets(line, 80, infile);
      |          ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:237:23: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  237 |                  fgets(line, 80, infile);
      |                  ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:256:15: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  256 |          fgets(line, 80, infile);
      |          ~~~~~^~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.cpp -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c: In function ‘read_next_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c:103:10: warning: variable ‘numatoms’ set but not used [-Wunused-but-set-variable]
  103 |   int i, numatoms;
      |          ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c: In function ‘write_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c:206:55: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  206 |     if (fwrite(tmp, sizeof(double), 3*n, namdbin->fd) != 3*n) {
      |                                                       ^~
contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c: In function ‘open_namdbin_read’:
contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c:78:3: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   78 |   fread(&filen, sizeof(namdbin_int32), 1, fd);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c: In function ‘read_mmtk_cdf_structure’:
contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c:730:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
  730 |       if (len > sizeof(name)) {
      |               ^
contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c: In function ‘read_mmtk_cdf_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c:1060:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
 1060 |     for (i=0; i<(3 * mmtk->atom_numberdim); i++) {
      |                ^
In file included from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:71:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: ‘void swap8_aligned(void*, long int)’ defined but not used [-Wunused-function]
  124 | static void swap8_aligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:110:13: warning: ‘void swap4_aligned(void*, long int)’ defined but not used [-Wunused-function]
  110 | static void swap4_aligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: ‘void swap2_aligned(void*, long int)’ defined but not used [-Wunused-function]
   96 | static void swap2_aligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘void swap2_unaligned(void*, long int)’ defined but not used [-Wunused-function]
   32 | static void swap2_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:70:
contrib/uiuc/plugins/molfile_plugin/src/vmddir.h:145:12: warning: ‘int vmd_file_is_executable(const char*)’ defined but not used [-Wunused-function]
  145 | static int vmd_file_is_executable(const char * filename) {
      |            ^~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c: In function ‘read_mmtk_cdf_structure’:
contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c:689:5: warning: ‘strncpy’ output may be truncated copying 15 bytes from a string of length 15 [-Wstringop-truncation]
  689 |     strncpy(atom->type, atom->name, sizeof(atom->type)-1);
      |     ^
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/offplugin.cpp -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/offplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp: In function ‘int read_parm7_structure(void*, int*, molfile_atom_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp:78:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   78 |         fgets(buf, 85, file);
      |         ~~~~~^~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp:25:
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function ‘int parse_parm7_atoms(const char*, int, molfile_atom_t*, FILE*)’:
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:204:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  204 |       fgets(buf, 85, file);
      |       ~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function ‘int parse_parm7_atype(const char*, int, molfile_atom_t*, FILE*)’:
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:257:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  257 |       fgets(buf, 85, file);
      |       ~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function ‘int parse_parm7_resnames(const char*, int, char*, FILE*)’:
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:275:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  275 |       fgets(buf, 85, file);
      |       ~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function ‘int parse_parm7_respointers(const char*, int, molfile_atom_t*, int, const char*, FILE*)’:
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:289:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  289 |   fscanf(file, " %d", &cur);
      |   ~~~~~~^~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function ‘parmstruct* read_parm7_header(FILE*)’:
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:368:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  368 |   fgets(sdum, 512, file);
      |   ~~~~~^~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:371:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  371 |   fscanf(file, "%s\n", sdum); // "%FLAG"
      |   ~~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:378:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  378 |   fscanf(file, "%s\n", sdum); // "TITLE" or "CTITLE"
      |   ~~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:385:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  385 |   fscanf(file, "%s\n", sdum); // "FORMAT (20a4)"
      |   ~~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:399:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  399 |   fgets(prm->title, sizeof(prm->title), file);
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:427:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  427 |     fgets(sdum, sizeof(sdum), file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:439:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  439 |   fscanf(file,parm7,
      |   ~~~~~~^~~~~~~~~~~~
  440 |          &prm->Natom,  &prm->Ntypes, &prm->Nbonh, &prm->Nbona,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  441 |          &prm->Ntheth, &prm->Ntheta, &prm->Nphih, &prm->Nphia,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  442 |          &prm->Jparm,  &prm->Nparm);
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:443:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  443 |   fscanf(file, parm7,
      |   ~~~~~~^~~~~~~~~~~~~
  444 |          &prm->Nnb,   &prm->Nres,   &prm->Mbona,  &prm->Mtheta,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  445 |          &prm->Mphia, &prm->Numbnd, &prm->Numang, &prm->Mptra,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  446 |          &prm->Natyp, &prm->Nphb);
      |          ~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:447:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  447 |   fscanf(file, parm7,  &prm->Ifpert, &prm->Nbper,  &prm->Ngper,
      |   ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  448 |          &prm->Ndper, &prm->Mbper,  &prm->Mgper, &prm->Mdper,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  449 |          &prm->IfBox, &prm->Nmxrs,  &prm->IfCap);
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:451:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  451 |   fscanf(file,"%8d",&prm->Numextra); //BB
      |   ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function ‘int read_parm7_flag(FILE*, const char*, const char*)’:
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:79:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   79 |   fscanf(file, "%s\n", buf);
      |   ~~~~~~^~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:87:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   87 |   fscanf(file, "%s\n", buf);
      |   ~~~~~~^~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:97:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   97 |   fscanf(file, "%s\n", buf);
      |   ~~~~~~^~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function ‘read_parm7_structure(void*, int*, molfile_atom_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:277:12: warning: ‘strncpy’ output may be truncated copying 4 bytes from a string of length 84 [-Wstringop-truncation]
  277 |     strncpy(resnames, buf+4*j, 4);
      |            ^
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:259:12: warning: ‘strncpy’ output may be truncated copying 4 bytes from a string of length 84 [-Wstringop-truncation]
  259 |     strncpy(atom->type, buf+4*j, 4);
      |            ^
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:206:12: warning: ‘strncpy’ output may be truncated copying 4 bytes from a string of length 84 [-Wstringop-truncation]
  206 |     strncpy(atom->name, buf+4*j, 4);
      |            ^
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/parmplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In file included from contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp:24:
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h: In member function ‘int {anonymous}::ReadPARM::readparm(FILE*)’:
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:435:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  435 |           fscanf(file, " " DBLFMT, &prm->Charges[i]);
      |           ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:444:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  444 |           fscanf(file, " " DBLFMT, &prm->Masses[i]);
      |           ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:510:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  510 |           fscanf(file, " " DBLFMT, &prm->Rk[i]);
      |           ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:517:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  517 |           fscanf(file, " " DBLFMT, &prm->Req[i]);
      |           ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:524:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  524 |           fscanf(file, " " DBLFMT, &prm->Tk[i]);
      |           ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:531:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  531 |           fscanf(file, " " DBLFMT, &prm->Teq[i]);
      |           ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:538:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  538 |           fscanf(file, " " DBLFMT, &prm->Pk[i]);
      |           ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:545:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  545 |           fscanf(file, " " DBLFMT, &prm->Pn[i]);
      |           ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:552:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  552 |           fscanf(file, " " DBLFMT, &prm->Phase[i]);
      |           ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:559:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  559 |           fscanf(file, " " DBLFMT, &prm->Solty[i]);
      |           ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:567:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  567 |           fscanf(file, " " DBLFMT, &prm->Cn1[i]);
      |           ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:575:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  575 |           fscanf(file, " " DBLFMT, &prm->Cn2[i]);
      |           ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:756:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  756 |           fscanf(file, " " DBLFMT, &prm->HB12[i]);
      |           ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:763:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  763 |           fscanf(file, " " DBLFMT, &prm->HB6[i]);
      |           ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:771:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  771 |           fscanf(file, " " DBLFMT, &H[i]);
      |           ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:853:23: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  853 |                 fscanf(file, " " DBLFMT " " DBLFMT " " DBLFMT,
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  854 |                                 &prm->Box[0], &prm->Box[1], &prm->Box[2]);
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:867:23: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  867 |                 fscanf(file, " %d " DBLFMT " " DBLFMT " " DBLFMT " " DBLFMT,
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  868 |                                 &prm->Natcap, &prm->Cutcap,
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~
  869 |                                 &prm->Xcap, &prm->Ycap, &prm->Zcap);
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.cpp -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In file included from contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.cpp:53:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: ‘void swap2_aligned(void*, long int)’ defined but not used [-Wunused-function]
   96 | static void swap2_aligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: ‘void swap8_unaligned(void*, long int)’ defined but not used [-Wunused-function]
   65 | static void swap8_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: ‘void swap4_unaligned(void*, long int)’ defined but not used [-Wunused-function]
   46 | static void swap4_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘void swap2_unaligned(void*, long int)’ defined but not used [-Wunused-function]
   32 | static void swap2_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In file included from contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:32:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:133:12: warning: ‘get_pte_idx’ defined but not used [-Wunused-function]
  133 | static int get_pte_idx(const char *label)
      |            ^~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:31:
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h: In function ‘read_next_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:119:3: warning: ‘strncpy’ output may be truncated copying 80 bytes from a string of length 82 [-Wstringop-truncation]
  119 |   strncpy(tmp, record, PDB_RECORD_LENGTH);
      |   ^
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:144:5: warning: ‘strncpy’ output may be truncated copying 8 bytes from a string of length 52 [-Wstringop-truncation]
  144 |     strncpy(numstr, record + 30, 8);
      |     ^
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:149:5: warning: ‘strncpy’ output may be truncated copying 8 bytes from a string of length 44 [-Wstringop-truncation]
  149 |     strncpy(numstr+10, record + 38, 8);
      |     ^
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:154:5: warning: ‘strncpy’ output may be truncated copying 8 bytes from a string of length 36 [-Wstringop-truncation]
  154 |     strncpy(numstr+20, record + 46, 8);
      |     ^
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:159:5: warning: ‘strncpy’ output may be truncated copying 6 bytes from a string of length 28 [-Wstringop-truncation]
  159 |     strncpy(numstr+30, record + 54, 6);
      |     ^
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:164:5: warning: ‘strncpy’ output may be truncated copying 6 bytes from a string of length 22 [-Wstringop-truncation]
  164 |     strncpy(numstr+40, record + 60, 6);
      |     ^
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h: In function ‘open_pdb_read’:
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:190:5: warning: ‘strncpy’ output may be truncated copying 9 bytes from a string of length 32 [-Wstringop-truncation]
  190 |     strncpy(date, record + 50, 9);
      |     ^
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:200:5: warning: ‘strncpy’ output may be truncated copying 4 bytes from a string of length 20 [-Wstringop-truncation]
  200 |     strncpy(pdbcode, record + 62, 4);
      |     ^
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h: In function ‘read_pdb_structure’:
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:299:3: warning: ‘strncpy’ output may be truncated copying 4 bytes from a string of length 70 [-Wstringop-truncation]
  299 |   strncpy(name, record + 12, 4);
      |   ^
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:304:3: warning: ‘strncpy’ output may be truncated copying 1 byte from a string of length 66 [-Wstringop-truncation]
  304 |   strncpy(altloc, record + 16, 1);
      |   ^
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:308:3: warning: ‘strncpy’ output may be truncated copying 4 bytes from a string of length 65 [-Wstringop-truncation]
  308 |   strncpy(resname, record + 17, 4);
      |   ^
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:317:3: warning: ‘strncpy’ output may be truncated copying 4 bytes from a string of length 60 [-Wstringop-truncation]
  317 |   strncpy(resid, record + 22, 4);
      |   ^
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:159:5: warning: ‘strncpy’ output may be truncated copying 6 bytes from a string of length 28 [-Wstringop-truncation]
  159 |     strncpy(numstr+30, record + 54, 6);
      |     ^
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:164:5: warning: ‘strncpy’ output may be truncated copying 6 bytes from a string of length 22 [-Wstringop-truncation]
  164 |     strncpy(numstr+40, record + 60, 6);
      |     ^
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:330:5: warning: ‘strncpy’ output may be truncated copying 4 bytes from a string of length 10 [-Wstringop-truncation]
  330 |     strncpy(segname, record + 72, 4);
      |     ^
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:339:5: warning: ‘strncpy’ output may be truncated copying 2 bytes from a string of length 6 [-Wstringop-truncation]
  339 |     strncpy(elementsymbol, record + 76, 2);
      |     ^
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function ‘int getUniqueResID(char*, int)’:
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:443:7: warning: unused variable ‘i’ [-Wunused-variable]
  443 |   int i, uid;
      |       ^
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function ‘int parseStructureFaster(molfile_atom_t*, int*, pdbxParser*)’:
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:484:47: warning: unused variable ‘j’ [-Wunused-variable]
  484 |   int i, count, atomdata, pos, idx, xyzcount, j;
      |                                               ^
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:503:8: warning: unused variable ‘oldChain’ [-Wunused-variable]
  503 |   char oldChain[8];
      |        ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function ‘bool readAngleBonds(molfile_atom_t*, pdbxParser*)’:
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:803:7: warning: unused variable ‘bondTable’ [-Wunused-variable]
  803 |   int bondTable[32];
      |       ^~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:807:15: warning: unused variable ‘j’ [-Wunused-variable]
  807 |   int i, pos, j, k;
      |               ^
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:811:8: warning: unused variable ‘modelNum’ [-Wunused-variable]
  811 |   char modelNum[8];
      |        ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:822:20: warning: unused variable ‘atom’ [-Wunused-variable]
  822 |   molfile_atom_t * atom;
      |                    ^~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:884:7: warning: unused variable ‘test’ [-Wunused-variable]
  884 |   int test = parser->nbonds + bnum;
      |       ^~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function ‘bool readRMSDBonds(molfile_atom_t*, pdbxParser*)’:
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:984:7: warning: unused variable ‘bondTable’ [-Wunused-variable]
  984 |   int bondTable[32];
      |       ^~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:988:15: warning: unused variable ‘j’ [-Wunused-variable]
  988 |   int i, pos, j, k;
      |               ^
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:991:8: warning: unused variable ‘modelNum’ [-Wunused-variable]
  991 |   char modelNum[8];
      |        ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:1002:20: warning: unused variable ‘atom’ [-Wunused-variable]
 1002 |   molfile_atom_t * atom;
      |                    ^~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function ‘void* open_file_write(const char*, const char*, int)’:
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:1409:9: warning: unused variable ‘fd’ [-Wunused-variable]
 1409 |   FILE* fd;
      |         ^~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: At global scope:
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:313:14: warning: ‘float stringToFloat(char*)’ defined but not used [-Wunused-function]
  313 | static float stringToFloat(char * str) {
      |              ^~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:25:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:133:12: warning: ‘int get_pte_idx(const char*)’ defined but not used [-Wunused-function]
  133 | static int get_pte_idx(const char *label)
      |            ^~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:95:20: warning: ‘const char* get_pte_label(int)’ defined but not used [-Wunused-function]
   95 | static const char *get_pte_label(const int idx)
      |                    ^~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/phiplugin.cpp -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/phiplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/phiplugin.cpp: In function ‘read_phi_data(void*, int, float*, float*)’:
contrib/uiuc/plugins/molfile_plugin/src/phiplugin.cpp:216:14: warning: ‘strncpy’ output may be truncated copying 4 bytes from a string of length 84 [-Wstringop-truncation]
  216 |       strncpy(currNum, currChar, 4);
      |              ^
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/pltplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function ‘DDmkdir(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned int, int, int)’:
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:714:23: warning: ‘%03x’ directive writing between 3 and 8 bytes into a region of size 6 [-Wformat-overflow=]
  714 |         sprintf(sub, "%03x/", i);
      |                       ^~~~
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:714:22: note: directive argument in the range [0, 2147483646]
  714 |         sprintf(sub, "%03x/", i);
      |                      ^~~~~~~
In file included from /usr/include/stdio.h:906,
                 from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.hxx:56,
                 from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:47:
In function ‘sprintf’,
    inlined from ‘DDmkdir(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned int, int, int)’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:714:9:
/usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 5 and 10 bytes into a destination of size 6
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function ‘DDmkdir(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned int, int, int)’:
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:722:30: warning: ‘%03x’ directive writing between 3 and 8 bytes into a region of size 6 [-Wformat-overflow=]
  722 |             sprintf(subsub, "%03x", j);
      |                              ^~~~
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:722:29: note: directive argument in the range [0, 2147483646]
  722 |             sprintf(subsub, "%03x", j);
      |                             ^~~~~~
In function ‘sprintf’,
    inlined from ‘DDmkdir(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned int, int, int)’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:722:13:
/usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 4 and 9 bytes into a destination of size 6
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp: In function ‘int read_plt_data(void*, int, float*, float*)’:
contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp:143:51: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  143 |   if ( fread(datablock, sizeof(float), ndata, fd) != ndata ) {
      |        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp: In function ‘void* open_plt_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp:69:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   69 |   fread(intHeader, sizeof(int), 5, fd);
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp:82:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   82 |   fread(floatHeader, sizeof(float), 6, fd);
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp:42:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h: At global scope:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: ‘void swap8_aligned(void*, long int)’ defined but not used [-Wunused-function]
  124 | static void swap8_aligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: ‘void swap2_aligned(void*, long int)’ defined but not used [-Wunused-function]
   96 | static void swap2_aligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: ‘void swap8_unaligned(void*, long int)’ defined but not used [-Wunused-function]
   65 | static void swap8_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: ‘void swap4_unaligned(void*, long int)’ defined but not used [-Wunused-function]
   46 | static void swap4_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘void swap2_unaligned(void*, long int)’ defined but not used [-Wunused-function]
   32 | static void swap2_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/plyplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In file included from contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp:30:
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function ‘void put_element_ply(PlyFile*, void*)’:
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:459:7: warning: unused variable ‘i’ [-Wunused-variable]
  459 |   int i,j,k;
      |       ^
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function ‘void ascii_get_element(PlyFile*, char*)’:
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1407:7: warning: unused variable ‘i’ [-Wunused-variable]
 1407 |   int i,j,k;
      |       ^
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function ‘void binary_get_element(PlyFile*, char*)’:
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1541:7: warning: unused variable ‘i’ [-Wunused-variable]
 1541 |   int i,j,k;
      |       ^
contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp: In function ‘int read_rawgraphics(void*, int*, const molfile_graphics_t**)’:
contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp:107:17: warning: variable ‘vert_other’ set but not used [-Wunused-but-set-variable]
  107 |   PlyOtherProp *vert_other=NULL;
      |                 ^~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp:108:17: warning: variable ‘face_other’ set but not used [-Wunused-but-set-variable]
  108 |   PlyOtherProp *face_other=NULL;
      |                 ^~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function ‘void binary_get_element(PlyFile*, char*)’:
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1629:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1629 |       fread (&len, sizeof(int), 1, fp);
      |       ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1631:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1631 |       fread (str, len, 1, fp);
      |       ~~~~~~^~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function ‘void get_binary_item(FILE*, int, int*, unsigned int*, double*)’:
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2057:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2057 |       fread (ptr, 1, 1, fp);
      |       ~~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2063:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2063 |       fread (ptr, 1, 1, fp);
      |       ~~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2069:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2069 |       fread (ptr, 2, 1, fp);
      |       ~~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2075:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2075 |       fread (ptr, 2, 1, fp);
      |       ~~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2081:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2081 |       fread (ptr, 4, 1, fp);
      |       ~~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2087:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2087 |       fread (ptr, 4, 1, fp);
      |       ~~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2093:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2093 |       fread (ptr, 4, 1, fp);
      |       ~~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2099:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2099 |       fread (ptr, 8, 1, fp);
      |       ~~~~~~^~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp:27:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h: At global scope:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: ‘void swap8_aligned(void*, long int)’ defined but not used [-Wunused-function]
  124 | static void swap8_aligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:110:13: warning: ‘void swap4_aligned(void*, long int)’ defined but not used [-Wunused-function]
  110 | static void swap4_aligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: ‘void swap2_aligned(void*, long int)’ defined but not used [-Wunused-function]
   96 | static void swap2_aligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: ‘void swap8_unaligned(void*, long int)’ defined but not used [-Wunused-function]
   65 | static void swap8_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: ‘void swap4_unaligned(void*, long int)’ defined but not used [-Wunused-function]
   46 | static void swap4_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘void swap2_unaligned(void*, long int)’ defined but not used [-Wunused-function]
   32 | static void swap2_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function ‘framefile(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned long, unsigned long, int, int)’:
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:675:35: warning: ‘__sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
  675 |             sprintf(answer, "%03x/", d1);
      |                                   ^
In function ‘sprintf’,
    inlined from ‘DDreldir(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, int, int)’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:675:13,
    inlined from ‘framefile(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned long, unsigned long, int, int)’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:779:23:
/usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 5 and 10 bytes into a destination of size 9
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function ‘framefile(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned long, unsigned long, int, int)’:
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:673:35: warning: ‘%03x’ directive writing between 3 and 8 bytes into a region of size between 0 and 5 [-Wformat-overflow=]
  673 |             sprintf(answer, "%03x/%03x/", d1, d2);
      |                                   ^~~~
In function ‘DDreldir(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, int, int)’,
    inlined from ‘framefile(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned long, unsigned long, int, int)’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:779:23:
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:673:29: note: directive argument in the range [0, 2147483646]
  673 |             sprintf(answer, "%03x/%03x/", d1, d2);
      |                             ^~~~~~~~~~~~
In function ‘sprintf’,
    inlined from ‘DDreldir(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, int, int)’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:673:13,
    inlined from ‘framefile(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned long, unsigned long, int, int)’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:779:23:
/usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 9 and 19 bytes into a destination of size 9
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function ‘recreate_command_line’:
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1334:11: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=]
 1334 |   line[0] = '\0';
      |   ~~~~~~~~^~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1333:26: note: destination object of size 0 allocated by ‘malloc’
 1333 |   line = (char *) malloc (sizeof(char) * len);
      |                   ~~~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function ‘ascii_get_element(PlyFile*, char*)’:
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1497:18: warning: ‘item’ may be used uninitialized [-Wmaybe-uninitialized]
 1497 |             item += item_size;
      |             ~~~~~^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1413:20: note: ‘item’ was declared here
 1413 |   char *elem_data,*item;
      |                    ^~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1477:19: warning: ‘other_data’ may be used uninitialized [-Wmaybe-uninitialized]
 1477 |       store_array = (char **) (elem_data + prop->offset);
      |       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1423:9: note: ‘other_data’ was declared here
 1423 |   char *other_data;
      |         ^~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function ‘binary_get_element(PlyFile*, char*)’:
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1620:18: warning: ‘item’ may be used uninitialized [-Wmaybe-uninitialized]
 1620 |             item += item_size;
      |             ~~~~~^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1546:9: note: ‘item’ was declared here
 1546 |   char *item;
      |         ^~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1634:14: warning: ‘other_data’ may be used uninitialized [-Wmaybe-uninitialized]
 1634 |         item = elem_data + prop->offset;
      |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1555:9: note: ‘other_data’ was declared here
 1555 |   char *other_data;
      |         ^~~~~~~~~~
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c: In function ‘get_atom_radius’:
contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:166:16: warning: variable ‘type’ set but not used [-Wunused-but-set-variable]
  166 |   char *name, *type;
      |                ^~~~
contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:166:9: warning: variable ‘name’ set but not used [-Wunused-but-set-variable]
  166 |   char *name, *type;
      |         ^~~~
contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c: In function ‘read_pqr_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:109:3: warning: ‘strncpy’ output may be truncated copying 80 bytes from a string of length 81 [-Wstringop-truncation]
  109 |   strncpy(tmp, record, PQR_RECORD_LENGTH);
      |   ^
contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c: In function ‘read_pqr_structure’:
contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:137:3: warning: ‘strncpy’ output may be truncated copying 4 bytes from a string of length 68 [-Wstringop-truncation]
  137 |   strncpy(name, record+12, 4);    name[4] = 0;
      |   ^
contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:138:3: warning: ‘strncpy’ output may be truncated copying 4 bytes from a string of length 63 [-Wstringop-truncation]
  138 |   strncpy(resname, record+17, 4); resname[4] = 0;
      |   ^
contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:139:3: warning: ‘strncpy’ output may be truncated copying 1 byte from a string of length 59 [-Wstringop-truncation]
  139 |   strncpy(chain, record+21, 1);   chain[1] = 0;
      |   ^
contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:140:3: warning: ‘strncpy’ output may be truncated copying 4 bytes from a string of length 58 [-Wstringop-truncation]
  140 |   strncpy(resid, record+22, 4);   resid[4] = 0;
      |   ^
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/psfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c: In function ‘write_psf_structure’:
contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c:782:33: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  782 |       if (strlen(atoms[i].type) > fw) {
      |                                 ^
In file included from contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c:30:
contrib/uiuc/plugins/molfile_plugin/src/fortread.h: At top level:
contrib/uiuc/plugins/molfile_plugin/src/fortread.h:103:12: warning: ‘fortread_4’ defined but not used [-Wunused-function]
  103 | static int fortread_4(void *dest, int n, int swap, FILE *fd) {
      |            ^~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/fortread.h:55:12: warning: ‘fort_get_endian_reclen’ defined but not used [-Wunused-function]
   55 | static int fort_get_endian_reclen(int reclen, int word0, int word1,
      |            ^~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/fortread.h:36:12: warning: ‘fort_eat_recmark’ defined but not used [-Wunused-function]
   36 | static int fort_eat_recmark(FILE *ifp, int recmarklen) {
      |            ^~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/fortread.h:28:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: ‘swap8_aligned’ defined but not used [-Wunused-function]
  124 | static void swap8_aligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: ‘swap2_aligned’ defined but not used [-Wunused-function]
   96 | static void swap2_aligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: ‘swap8_unaligned’ defined but not used [-Wunused-function]
   65 | static void swap8_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: ‘swap4_unaligned’ defined but not used [-Wunused-function]
   46 | static void swap4_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘swap2_unaligned’ defined but not used [-Wunused-function]
   32 | static void swap2_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.cpp -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/dxplugin.cpp -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/dxplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c: In function ‘open_rst_read’:
contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c:48:11: warning: variable ‘timesteprst’ set but not used [-Wunused-but-set-variable]
   48 |   double  timesteprst;
      |           ^~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c:67:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   67 |   fgets(title, 82, fd);
      |   ^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c:70:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   70 |   fgets(line, 82, fd);
      |   ^~~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/edmplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/situsplugin.cpp -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/situsplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp: In function ‘int read_edm_data(void*, int, float*, float*)’:
contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp:240:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  240 |   fgets(readbuf, 13, edm->fd);
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp: In function ‘void eatline(FILE*)’:
contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp:44:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   44 |   fgets(readbuf, 1024, fd);    // go on to next line
      |   ~~~~~^~~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp: In function ‘int read_spider_data(void*, int, float*, float*)’:
contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp:286:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  286 |   fread(datablock, total * sizeof(float), 1, fd);
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp:36:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h: At global scope:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: ‘void swap8_aligned(void*, long int)’ defined but not used [-Wunused-function]
  124 | static void swap8_aligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: ‘void swap2_aligned(void*, long int)’ defined but not used [-Wunused-function]
   96 | static void swap2_aligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: ‘void swap8_unaligned(void*, long int)’ defined but not used [-Wunused-function]
   65 | static void swap8_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: ‘void swap4_unaligned(void*, long int)’ defined but not used [-Wunused-function]
   46 | static void swap4_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘void swap2_unaligned(void*, long int)’ defined but not used [-Wunused-function]
   32 | static void swap2_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp: In function ‘void* open_fs4_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp:79:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   79 |   fread(&dataBegin, sizeof(int), 1, fd);
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp:48:
contrib/uiuc/plugins/molfile_plugin/src/fortread.h: At global scope:
contrib/uiuc/plugins/molfile_plugin/src/fortread.h:133:13: warning: ‘void strnwscpy(char*, const char*, int)’ defined but not used [-Wunused-function]
  133 | static void strnwscpy(char *target, const char *source, const int len) {
      |             ^~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/fortread.h:55:12: warning: ‘int fort_get_endian_reclen(int, int, int, int*, int*)’ defined but not used [-Wunused-function]
   55 | static int fort_get_endian_reclen(int reclen, int word0, int word1,
      |            ^~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/fortread.h:36:12: warning: ‘int fort_eat_recmark(FILE*, int)’ defined but not used [-Wunused-function]
   36 | static int fort_eat_recmark(FILE *ifp, int recmarklen) {
      |            ^~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp:47:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: ‘void swap8_aligned(void*, long int)’ defined but not used [-Wunused-function]
  124 | static void swap8_aligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: ‘void swap2_aligned(void*, long int)’ defined but not used [-Wunused-function]
   96 | static void swap2_aligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: ‘void swap8_unaligned(void*, long int)’ defined but not used [-Wunused-function]
   65 | static void swap8_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: ‘void swap4_unaligned(void*, long int)’ defined but not used [-Wunused-function]
   46 | static void swap4_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘void swap2_unaligned(void*, long int)’ defined but not used [-Wunused-function]
   32 | static void swap2_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/stlplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp: In function ‘int read_rawgraphics(void*, int*, const molfile_graphics_t**)’:
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:96:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   96 |     fgets(line, 80, infile);
      |     ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:104:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  104 |     fgets(line, 80, infile);
      |     ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:119:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  119 |       fgets(line, 80, infile);
      |       ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:131:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  131 |         fgets(line, 80, infile);
      |         ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:153:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  153 |       fgets(line, 80, infile);
      |       ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:162:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  162 |       fgets(line, 80, infile);
      |       ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:171:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  171 |       fgets(line, 80, infile);
      |       ~~~~~^~~~~~~~~~~~~~~~~~
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In file included from contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:160:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function ‘angular_momentum_expon’:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:545:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  545 |   for (i=0; i<strlen(ang_mom_str); i++) {
      |              ^
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘have_gamess’:
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1106:8: warning: variable ‘word’ set but not used [-Wunused-but-set-variable]
 1106 |   char word[3][BUFSIZ];
      |        ^~~~
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘get_basis_stats’:
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:2264:8: warning: variable ‘word’ set but not used [-Wunused-but-set-variable]
 2264 |   char word[7][BUFSIZ];
      |        ^~~~
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.c -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘get_wavefunction’:
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:3573:8: warning: variable ‘word’ set but not used [-Wunused-but-set-variable]
 3573 |   char word[6][BUFSIZ];
      |        ^~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function ‘eatline’:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:840:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  840 |     fgets(readbuf, 1024, fd);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: At top level:
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1002:13: warning: ‘print_input_data’ defined but not used [-Wunused-function]
 1002 | static void print_input_data(qmdata_t *data) {
      |             ^~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:162:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:133:12: warning: ‘get_pte_idx’ defined but not used [-Wunused-function]
  133 | static int get_pte_idx(const char *label)
      |            ^~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:109:14: warning: ‘get_pte_vdw_radius’ defined but not used [-Wunused-function]
  109 | static float get_pte_vdw_radius(const int idx)
      |              ^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:102:14: warning: ‘get_pte_mass’ defined but not used [-Wunused-function]
  102 | static float get_pte_mass(const int idx)
      |              ^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:95:20: warning: ‘get_pte_label’ defined but not used [-Wunused-function]
   95 | static const char *get_pte_label(const int idx)
      |                    ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1097:13: warning: ‘whereami’ defined but not used [-Wunused-function]
 1097 | static void whereami(FILE *file) {
      |             ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1077:13: warning: ‘thisline’ defined but not used [-Wunused-function]
 1077 | static void thisline(FILE *file) {
      |             ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1028:12: warning: ‘fpexpftoc’ defined but not used [-Wunused-function]
 1028 | static int fpexpftoc(char *ftocstr) {
      |            ^~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:901:14: warning: ‘strtoupper’ defined but not used [-Wunused-function]
  901 | static char *strtoupper(char *s) {
      |              ^~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:895:12: warning: ‘iswhiteline’ defined but not used [-Wunused-function]
  895 | static int iswhiteline(char *s) {
      |            ^~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:585:13: warning: ‘print_matrix4’ defined but not used [-Wunused-function]
  585 | static void print_matrix4(const float mat[16]) {
      |             ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.c: In function ‘read_tinker_structure’:
contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.c:103:5: warning: ‘strncpy’ output may be truncated copying 16 bytes from a string of length 1023 [-Wstringop-truncation]
  103 |     strncpy(atom->name, buffer, sizeof(atom->name));
      |     ^
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp: In function ‘void* open_uhbd_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp:90:22: warning: variable ‘o’ set but not used [-Wunused-but-set-variable]
   90 |   float orig[3], ra, o[3], s[3]; //xdelta[3], ydelta[3], zdelta[3];
      |                      ^
contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp:90:28: warning: variable ‘s’ set but not used [-Wunused-but-set-variable]
   90 |   float orig[3], ra, o[3], s[3]; //xdelta[3], ydelta[3], zdelta[3];
      |                            ^
contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp: In function ‘int read_uhbd_data(void*, int, float*, float*)’:
contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp:254:66: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  254 |       if (fread(datablock + z*xysize, sizeof(float), xysize, fd) != xysize) {
      |           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp: In function ‘void* open_uhbd_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp:102:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  102 |   fread(&headersize, sizeof(int), 1, fd);
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp:47:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h: At global scope:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: ‘void swap8_aligned(void*, long int)’ defined but not used [-Wunused-function]
  124 | static void swap8_aligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: ‘void swap2_aligned(void*, long int)’ defined but not used [-Wunused-function]
   96 | static void swap2_aligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: ‘void swap8_unaligned(void*, long int)’ defined but not used [-Wunused-function]
   65 | static void swap8_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘void swap2_unaligned(void*, long int)’ defined but not used [-Wunused-function]
   32 | static void swap2_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘read_gamess_structure’:
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:477:5: warning: ‘strncpy’ specified bound 16 equals destination size [-Wstringop-truncation]
  477 |     strncpy(atom->name, cur_atom->type, sizeof(atom->name));
      |     ^
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:478:5: warning: ‘strncpy’ specified bound 16 equals destination size [-Wstringop-truncation]
  478 |     strncpy(atom->type, cur_atom->type, sizeof(atom->type));
      |     ^
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘read_gamess_rundata’:
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:615:3: warning: ‘strncpy’ output may be truncated copying 81 bytes from a string of length 8191 [-Wstringop-truncation]
  615 |   strncpy(sys_data->basis_string, data->basis_string,
      |   ^
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:620:3: warning: ‘strncpy’ output may be truncated copying 4096 bytes from a string of length 8191 [-Wstringop-truncation]
  620 |   strncpy(sys_data->runtitle, data->runtitle, sizeof(sys_data->runtitle));
      |   ^
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:621:3: warning: ‘strncpy’ output may be truncated copying 81 bytes from a string of length 8191 [-Wstringop-truncation]
  621 |   strncpy(sys_data->geometry, data->geometry, sizeof(sys_data->geometry));
      |   ^
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:622:3: warning: ‘strncpy’ output may be truncated copying 81 bytes from a string of length 8191 [-Wstringop-truncation]
  622 |   strncpy(sys_data->version_string, data->version_string,
      |   ^
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘get_coordinates’:
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1618:5: warning: ‘strncpy’ output may be truncated copying 11 bytes from a string of length 8191 [-Wstringop-truncation]
 1618 |     strncpy(atm->type, atname, sizeof(atm->type));
      |     ^
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c: In function ‘read_vasp5xdatcar_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:224:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  224 |     fgets(lineptr, LINESIZE, data->file);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c: In function ‘read_vasp5xdatcar_structure’:
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:174:27: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  174 |   for (i = 0; i < 2; ++i) fgets(lineptr, LINESIZE, data->file);
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:180:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  180 |     fgets(lineptr, LINESIZE, data->file);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:189:26: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  189 |  for (i = 0; i < 3; ++i) fgets(lineptr, LINESIZE, data->file);
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:194:4: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  194 |    fgets(lineptr, LINESIZE, data->file);
      |    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:204:26: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  204 |  for (i = 0; i < 8; ++i) fgets(lineptr, LINESIZE, data->file);
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c: In function ‘open_vasp5xdatcar_read’:
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:69:27: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   69 |   for (i = 0; i < 5; ++i) fgets(lineptr, LINESIZE, data->file);
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:72:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   72 |   fgets(lineptr, LINESIZE, data->file);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:77:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   77 |   fgets(lineptr, LINESIZE, data->file);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:40:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h: At top level:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: ‘get_pte_idx_from_string’ defined but not used [-Wunused-function]
  160 | static int get_pte_idx_from_string(const char *label) {
      |            ^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘get_runtitle’:
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1459:3: warning: ‘strncpy’ specified bound 8192 equals destination size [-Wstringop-truncation]
 1459 |   strncpy(data->runtitle,trimright(buffer),sizeof(data->runtitle));
      |   ^
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘get_contrl’:
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1981:3: warning: ‘strncpy’ specified bound 8192 equals destination size [-Wstringop-truncation]
 1981 |   strncpy(data->geometry, trimright(temp+7), sizeof(data->geometry));
      |   ^
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c: In function ‘read_vaspchgcar_data’:
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:237:60: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  237 |   for (n = 0; n < data->numatoms + data->version + 5; ++n) fgets(lineptr, LINESIZE, data->file);
      |                                                            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:282:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  282 |       fgets(lineptr, LINESIZE, data->file);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c: In function ‘read_vaspchgcar_metadata’:
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:150:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  150 |   fgets(lineptr, LINESIZE, data->file);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c: In function ‘open_vaspchgcar_read’:
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:71:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   71 |   fgets(lineptr, LINESIZE, data->file);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:75:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   75 |   fgets(lineptr, LINESIZE, data->file);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:81:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   81 |     fgets(lineptr, LINESIZE, data->file);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:92:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   92 |   fgets(lineptr, LINESIZE, data->file);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:103:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  103 |       fgets(lineptr, LINESIZE, data->file);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:131:44: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  131 |   for (i = 0; i < data->numatoms + 2; ++i) fgets(lineptr, LINESIZE, data->file);
      |                                            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:41:
contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h: At top level:
contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h:111:13: warning: ‘vasp_timestep_unitcell’ defined but not used [-Wunused-function]
  111 | static void vasp_timestep_unitcell(molfile_timestep_t *ts, vasp_plugindata_t *data)
      |             ^~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘get_contrl_firefly’:
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1818:3: warning: ‘strncpy’ specified bound 8192 equals destination size [-Wstringop-truncation]
 1818 |   strncpy(data->geometry, trimright(temp+7), sizeof(data->geometry));
      |   ^
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘get_basis_options’:
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1422:5: warning: ‘__strncat_chk’ output may be truncated copying 1 byte from a string of length 9 [-Wstringop-truncation]
 1422 |     strncat(data->basis_string, &data->gbasis[3], 1);
      |     ^
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1411:5: warning: ‘__strncat_chk’ output may be truncated copying 1 byte from a string of length 9 [-Wstringop-truncation]
 1411 |     strncat(data->basis_string, &data->gbasis[2], 1);
      |     ^
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘get_proc_mem.isra.0’:
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1279:5: warning: ‘strncpy’ output may be truncated copying 256 bytes from a string of length 8191 [-Wstringop-truncation]
 1279 |     strncpy(data->memory,&word[2][0],sizeof(data->memory));
      |     ^
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1272:5: warning: ‘strncpy’ specified bound 256 equals destination size [-Wstringop-truncation]
 1272 |     strncpy(data->memory,trimright(temp),sizeof(data->memory));
      |     ^
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c: In function ‘read_vaspoutcar_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:239:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  239 |       fgets(lineptr, LINESIZE, data->file);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:242:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  242 |         fgets(lineptr, LINESIZE, data->file);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c: In function ‘read_vaspoutcar_structure’:
contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:204:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  204 |         fgets(lineptr, LINESIZE, data->file);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c: In function ‘open_vaspoutcar_read’:
contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:87:10: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   87 |          fgets(lineptr, LINESIZE, data->file);
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:40:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h: At top level:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: ‘get_pte_idx_from_string’ defined but not used [-Wunused-function]
  160 | static int get_pte_idx_from_string(const char *label) {
      |            ^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘get_input_structure’:
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1682:5: warning: ‘strncpy’ output may be truncated copying 11 bytes from a string of length 8191 [-Wstringop-truncation]
 1682 |     strncpy(atm->type, atname, sizeof(atm->type));
      |     ^
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c: In function ‘read_vaspparchg_data’:
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:238:60: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  238 |   for (n = 0; n < data->numatoms + data->version + 5; ++n) fgets(lineptr, LINESIZE, data->file);
      |                                                            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c: In function ‘read_vaspparchg_metadata’:
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:150:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  150 |   fgets(lineptr, LINESIZE, data->file);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c: In function ‘open_vaspparchg_read’:
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:71:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   71 |   fgets(lineptr, LINESIZE, data->file);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:75:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   75 |   fgets(lineptr, LINESIZE, data->file);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:81:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   81 |     fgets(lineptr, LINESIZE, data->file);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:92:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   92 |   fgets(lineptr, LINESIZE, data->file);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:103:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  103 |       fgets(lineptr, LINESIZE, data->file);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:131:44: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  131 |   for (i = 0; i < data->numatoms + 2; ++i) fgets(lineptr, LINESIZE, data->file);
      |                                            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:41:
contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h: At top level:
contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h:111:13: warning: ‘vasp_timestep_unitcell’ defined but not used [-Wunused-function]
  111 | static void vasp_timestep_unitcell(molfile_timestep_t *ts, vasp_plugindata_t *data)
      |             ^~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function ‘get_traj_frame.constprop.0’:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:819:5: warning: ‘strncpy’ output may be truncated copying 10 bytes from a string of length 10 [-Wstringop-truncation]
  819 |     strncpy((*atoms)[i].type, (*atoms)[indexmap[i]].type, 10);
      |     ^
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function ‘write_vaspposcar_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:360:40: warning: argument to ‘sizeof’ in ‘strncpy’ call is the same expression as the source; did you mean to use the size of the destination? [-Wsizeof-pointer-memaccess]
  360 |     strncpy(tmptype, atom->type, sizeof(atom->type));
      |                                        ^
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function ‘read_vaspposcar_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:232:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  232 |   fgets(lineptr, LINESIZE, data->file);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:237:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  237 |     fgets(lineptr, LINESIZE, data->file);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:246:43: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  246 |   for (i = 0; i < data->version - 2; ++i) fgets(lineptr, LINESIZE, data->file);
      |                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:249:35: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  249 |   if (tolower(lineptr[0]) == 's') fgets(lineptr, LINESIZE, data->file);
      |                                   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:256:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  256 |     fgets(lineptr, LINESIZE, data->file);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function ‘read_vaspposcar_structure’:
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:195:42: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  195 |  for (i = 0; i < data->version + 3; ++i) fgets(lineptr, LINESIZE, data->file);
      |                                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:198:34: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  198 |  if (tolower(lineptr[0]) == 's') fgets(lineptr, LINESIZE, data->file);
      |                                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:203:4: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  203 |    fgets(lineptr, LINESIZE, data->file);
      |    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function ‘open_vaspposcar_read’:
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:69:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   69 |   fgets(lineptr, LINESIZE, data->file);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:73:27: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   73 |   for (i = 0; i < 5; ++i) fgets(lineptr, LINESIZE, data->file);
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:87:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   87 |       fgets(lineptr, LINESIZE, data->file);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:40:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h: At top level:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: ‘get_pte_idx_from_string’ defined but not used [-Wunused-function]
  160 | static int get_pte_idx_from_string(const char *label) {
      |            ^~~~~~~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp: In function ‘void line3(FILE*, GRASSP*)’:
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:186:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  186 |   fread(line3, 1, 80, infile);
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp: In function ‘int read_rawgraphics(void*, int*, const molfile_graphics_t**)’:
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  280 | #define TRASH fread(trash, 4, 1, infile)
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:284:3: note: in expansion of macro ‘TRASH’
  284 |   TRASH;
      |   ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:285:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  285 |   fread(line, 1, 80, infile);
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  280 | #define TRASH fread(trash, 4, 1, infile)
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:291:3: note: in expansion of macro ‘TRASH’
  291 |   TRASH;
      |   ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  280 | #define TRASH fread(trash, 4, 1, infile)
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:305:3: note: in expansion of macro ‘TRASH’
  305 |   TRASH;
      |   ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:306:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  306 |   fread(line, 1, 80, infile);
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  280 | #define TRASH fread(trash, 4, 1, infile)
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:307:3: note: in expansion of macro ‘TRASH’
  307 |   TRASH;
      |   ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  280 | #define TRASH fread(trash, 4, 1, infile)
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:311:3: note: in expansion of macro ‘TRASH’
  311 |   TRASH;
      |   ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  280 | #define TRASH fread(trash, 4, 1, infile)
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:313:3: note: in expansion of macro ‘TRASH’
  313 |   TRASH;
      |   ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  280 | #define TRASH fread(trash, 4, 1, infile)
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:318:3: note: in expansion of macro ‘TRASH’
  318 |   TRASH;
      |   ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:319:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  319 |   fread(line, 1, 80, infile);
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  280 | #define TRASH fread(trash, 4, 1, infile)
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:320:3: note: in expansion of macro ‘TRASH’
  320 |   TRASH;
      |   ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  280 | #define TRASH fread(trash, 4, 1, infile)
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:328:3: note: in expansion of macro ‘TRASH’
  328 |   TRASH;
      |   ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:329:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  329 |   fread(line, 1, 80, infile);
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  280 | #define TRASH fread(trash, 4, 1, infile)
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:330:3: note: in expansion of macro ‘TRASH’
  330 |   TRASH;
      |   ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  280 | #define TRASH fread(trash, 4, 1, infile)
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:354:3: note: in expansion of macro ‘TRASH’
  354 |   TRASH;
      |   ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:355:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  355 |   fread(vertex, 3 * sizeof(float), nvert, infile);
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  280 | #define TRASH fread(trash, 4, 1, infile)
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:356:3: note: in expansion of macro ‘TRASH’
  356 |   TRASH;
      |   ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  280 | #define TRASH fread(trash, 4, 1, infile)
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:357:3: note: in expansion of macro ‘TRASH’
  357 |   TRASH;
      |   ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:358:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  358 |   fread(access, 3 * sizeof(float), nvert, infile);
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  280 | #define TRASH fread(trash, 4, 1, infile)
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:359:3: note: in expansion of macro ‘TRASH’
  359 |   TRASH;
      |   ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  280 | #define TRASH fread(trash, 4, 1, infile)
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:360:3: note: in expansion of macro ‘TRASH’
  360 |   TRASH;
      |   ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:361:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  361 |   fread(normal, 3 * sizeof(float), nvert, infile);
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  280 | #define TRASH fread(trash, 4, 1, infile)
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:362:3: note: in expansion of macro ‘TRASH’
  362 |   TRASH;
      |   ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  280 | #define TRASH fread(trash, 4, 1, infile)
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:371:5: note: in expansion of macro ‘TRASH’
  371 |     TRASH;
      |     ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:372:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  372 |     fread(triangle, 3 * sizeof(int), ntriangles, infile);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  280 | #define TRASH fread(trash, 4, 1, infile)
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:373:5: note: in expansion of macro ‘TRASH’
  373 |     TRASH;
      |     ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  280 | #define TRASH fread(trash, 4, 1, infile)
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:374:5: note: in expansion of macro ‘TRASH’
  374 |     TRASH;
      |     ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:375:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  375 |     fread(properties, 3 * sizeof(float), nvert, infile);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  280 | #define TRASH fread(trash, 4, 1, infile)
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:394:5: note: in expansion of macro ‘TRASH’
  394 |     TRASH;
      |     ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:395:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  395 |     fread(striangle, sizeof(short), 3 * ntriangles, infile);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  280 | #define TRASH fread(trash, 4, 1, infile)
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:396:5: note: in expansion of macro ‘TRASH’
  396 |     TRASH;
      |     ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  280 | #define TRASH fread(trash, 4, 1, infile)
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:397:5: note: in expansion of macro ‘TRASH’
  397 |     TRASH;
      |     ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:398:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  398 |     fread(properties, sizeof(float), 3 * nvert, infile);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:40:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h: At global scope:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: ‘void swap8_aligned(void*, long int)’ defined but not used [-Wunused-function]
  124 | static void swap8_aligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: ‘void swap8_unaligned(void*, long int)’ defined but not used [-Wunused-function]
   65 | static void swap8_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: ‘void swap4_unaligned(void*, long int)’ defined but not used [-Wunused-function]
   46 | static void swap4_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘void swap2_unaligned(void*, long int)’ defined but not used [-Wunused-function]
   32 | static void swap2_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c: In function ‘read_vaspxdatcar_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:283:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  283 |   fgets(lineptr, LINESIZE, data->file);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c: In function ‘read_vaspxdatcar_structure’:
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:228:27: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  228 |   for (i = 0; i < 4; ++i) fgets(lineptr, LINESIZE, data->file);
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:233:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  233 |     fgets(lineptr, LINESIZE, data->file);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:237:32: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  237 |       for (i = 0; i < 2; ++i)  fgets(lineptr, LINESIZE, data->file);
      |                                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:252:44: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  252 |   for (i = 0; i < 10 - data->version; ++i) fgets(lineptr, LINESIZE, data->file);
      |                                            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c: In function ‘open_vaspxdatcar_read’:
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:89:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   89 |   fgets(lineptr, LINESIZE, poscar);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:92:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   92 |   fgets(lineptr, LINESIZE, poscar);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:97:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   97 |     fgets(lineptr, LINESIZE, poscar);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:111:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  111 |   fgets(lineptr, LINESIZE, poscar);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:121:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  121 |       fgets(lineptr, LINESIZE, poscar);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:40:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h: At top level:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: ‘get_pte_idx_from_string’ defined but not used [-Wunused-function]
  160 | static int get_pte_idx_from_string(const char *label) {
      |            ^~~~~~~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/grdplugin.cpp -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/grdplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In file included from contrib/uiuc/plugins/molfile_plugin/src/grdplugin.cpp:51:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: ‘void swap8_aligned(void*, long int)’ defined but not used [-Wunused-function]
  124 | static void swap8_aligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: ‘void swap2_aligned(void*, long int)’ defined but not used [-Wunused-function]
   96 | static void swap2_aligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: ‘void swap8_unaligned(void*, long int)’ defined but not used [-Wunused-function]
   65 | static void swap8_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: ‘void swap4_unaligned(void*, long int)’ defined but not used [-Wunused-function]
   46 | static void swap4_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘void swap2_unaligned(void*, long int)’ defined but not used [-Wunused-function]
   32 | static void swap2_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c: In function ‘read_vaspxml_structure’:
contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:139:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  139 |       fgets(lineptr, LINESIZE, data->file);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:144:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  144 |         fgets(lineptr, LINESIZE, data->file);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c: In function ‘open_vaspxml_read’:
contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:86:8: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   86 |        fgets(lineptr, LINESIZE, data->file);
      |        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:92:8: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   92 |        fgets(lineptr, LINESIZE, data->file);
      |        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:47:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h: At top level:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: ‘get_pte_idx_from_string’ defined but not used [-Wunused-function]
  160 | static int get_pte_idx_from_string(const char *label) {
      |            ^~~~~~~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/gridplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c: In function ‘read_vaspxml_structure’:
contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:150:9: warning: ‘strncpy’ specified bound 16 equals destination size [-Wstringop-truncation]
  150 |         strncpy(atom->name, get_pte_label(idx), sizeof(atom->name));
      |         ^
contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp: In function ‘void* open_grid_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp:84:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   84 |   fread(&dataBegin, sizeof(int), 1, fd);
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp:60:
contrib/uiuc/plugins/molfile_plugin/src/fortread.h: At global scope:
contrib/uiuc/plugins/molfile_plugin/src/fortread.h:133:13: warning: ‘void strnwscpy(char*, const char*, int)’ defined but not used [-Wunused-function]
  133 | static void strnwscpy(char *target, const char *source, const int len) {
      |             ^~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/fortread.h:55:12: warning: ‘int fort_get_endian_reclen(int, int, int, int*, int*)’ defined but not used [-Wunused-function]
   55 | static int fort_get_endian_reclen(int reclen, int word0, int word1,
      |            ^~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/fortread.h:36:12: warning: ‘int fort_eat_recmark(FILE*, int)’ defined but not used [-Wunused-function]
   36 | static int fort_eat_recmark(FILE *ifp, int recmarklen) {
      |            ^~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp:59:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: ‘void swap8_aligned(void*, long int)’ defined but not used [-Wunused-function]
  124 | static void swap8_aligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: ‘void swap2_aligned(void*, long int)’ defined but not used [-Wunused-function]
   96 | static void swap2_aligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: ‘void swap8_unaligned(void*, long int)’ defined but not used [-Wunused-function]
   65 | static void swap8_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: ‘void swap4_unaligned(void*, long int)’ defined but not used [-Wunused-function]
   46 | static void swap4_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘void swap2_unaligned(void*, long int)’ defined but not used [-Wunused-function]
   32 | static void swap2_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In file included from contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp:30:
contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h: In function ‘int mdio_readline(md_file*, char*, int, int)’:
contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h:426:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  426 |         fgets(buf, n, mf->f);
      |         ~~~~~^~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h:48:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h: At global scope:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: ‘void swap2_aligned(void*, long int)’ defined but not used [-Wunused-function]
   96 | static void swap2_aligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: ‘void swap8_unaligned(void*, long int)’ defined but not used [-Wunused-function]
   65 | static void swap8_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: ‘void swap4_unaligned(void*, long int)’ defined but not used [-Wunused-function]
   46 | static void swap4_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘void swap2_unaligned(void*, long int)’ defined but not used [-Wunused-function]
   32 | static void swap2_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c: In function ‘vtf_open_file_read’:
contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:538:9: warning: ‘__strncat_chk’ output may be truncated copying 200 bytes from a string of length 254 [-Wstringop-truncation]
  538 |         strncat(msg, keyword, 200);
      |         ^
contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:629:7: warning: ‘__strncat_chk’ output may be truncated copying 200 bytes from a string of length 254 [-Wstringop-truncation]
  629 |       strncat(msg, keyword, 200);
      |       ^
contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c: In function ‘vtf_read_bonds’:
contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:147:48: warning: ‘%s’ directive argument is null [-Wformat-overflow=]
  147 |   sprintf(message, "vtfplugin:%d: error: %s: \"%s\"\n",
      |                                                ^~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h: In function ‘g96_header(md_file*, char*, int, float*) [clone .constprop.0]’:
contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h:650:39: warning: ‘strncpy’ output may be truncated copying 80 bytes from a string of length 500 [-Wstringop-truncation]
  650 |         if (title && titlelen) strncpy(title, buf, titlelen);
      |                                       ^
contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp: In function ‘int read_vtk_data(void*, int, float*, float*)’:
contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp:276:45: warning: variable ‘total’ set but not used [-Wunused-but-set-variable]
  276 |   int x, y, z, xsize, ysize, zsize, xysize, total;
      |                                             ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp: In function ‘int read_vtk_data_ex(void*, molfile_volumetric_readwrite_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp:338:45: warning: variable ‘total’ set but not used [-Wunused-but-set-variable]
  338 |   int x, y, z, xsize, ysize, zsize, xysize, total;
      |                                             ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp:371:15: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  371 |         fscanf(fd, "%lf %lf %lf", &vx, &vy, &vz);
      |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp: In function ‘int read_vtk_data(void*, int, float*, float*)’:
contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp:306:15: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  306 |         fscanf(fd, "%lf %lf %lf", &vx, &vy, &vz);
      |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp:72:
contrib/uiuc/plugins/include/vmdconio.h: At global scope:
contrib/uiuc/plugins/include/vmdconio.h:56:12: warning: ‘int vmdcon_printf(int, const char*, ...)’ defined but not used [-Wunused-function]
   56 | static int vmdcon_printf(int lvl, const char *fmt, ...) {
      |            ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h: In function ‘gro_header(md_file*, char*, int, float*, int*, int)’:
contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h:1018:33: warning: ‘strncpy’ output may be truncated copying between 1 and 80 bytes from a string of length 500 [-Wstringop-truncation]
 1018 |   if (title && titlelen) strncpy(title, buf, titlelen);
      |                                 ^
contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp: In function ‘open_gro_read(char const*, char const*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp:103:12: warning: ‘strncpy’ output may be truncated copying 80 bytes from a string of length 80 [-Wstringop-truncation]
  103 |     strncpy(gmx->meta->title, mdh.title, 80);
      |            ^
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function ‘int read_xbgf_timestep(void*, int, molfile_timestep_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:288:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  288 |     fgets(line, LINESIZE, bgf->file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:297:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  297 |     fgets(line, LINESIZE, bgf->file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function ‘int read_xbgf_bonds_aux(void*, int*, int**, int**, float**)’:
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:365:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  365 |     fgets(line, LINESIZE, bgf->file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:387:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  387 |   fgets(line, LINESIZE, bgf->file);
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:395:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  395 |     fgets(nextline, LINESIZE, bgf->file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:455:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  455 |         fgets(line, LINESIZE, bgf->file);
      |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function ‘int read_xbgf_structure(void*, int*, molfile_atom_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:241:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  241 |     fgets(line, LINESIZE, bgf->file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:250:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  250 |     fgets(line, LINESIZE, bgf->file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function ‘void* open_xbgf_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:72:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   72 |     fgets(line, LINESIZE, fd);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function ‘read_xbgf_timestep(void*, int, molfile_timestep_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:143:12: warning: ‘strncpy’ output may be truncated copying 10 bytes from a string of length 223 [-Wstringop-truncation]
  143 |     strncpy(numstr, record + 32, 10);
      |            ^
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:148:12: warning: ‘strncpy’ output may be truncated copying 10 bytes from a string of length 213 [-Wstringop-truncation]
  148 |     strncpy(numstr+10, record + 42, 10);
      |            ^
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:153:12: warning: ‘strncpy’ output may be truncated copying 10 bytes from a string of length 203 [-Wstringop-truncation]
  153 |     strncpy(numstr+20, record + 52, 10);
      |            ^
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/hash.c -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/hash.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function ‘read_xbgf_structure(void*, int*, molfile_atom_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:172:10: warning: ‘strncpy’ output may be truncated copying 5 bytes from a string of length 241 [-Wstringop-truncation]
  172 |   strncpy(name, record + 14, 5);
      |          ^
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:177:10: warning: ‘strncpy’ output may be truncated copying 4 bytes from a string of length 235 [-Wstringop-truncation]
  177 |   strncpy(resname, record + 20, 4);
      |          ^
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:182:10: warning: ‘strncpy’ output may be truncated copying 4 bytes from a string of length 154 [-Wstringop-truncation]
  182 |   strncpy(segname, record + 101, 4);
      |          ^
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:197:10: warning: ‘strncpy’ output may be truncated copying 5 bytes from a string of length 192 [-Wstringop-truncation]
  197 |   strncpy(type, record+63, 5);
      |          ^
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/inthash.c -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/inthash.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp: In function ‘void eatline(FILE*)’:
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:238:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  238 |   fgets(readbuf, 1024, fd);    // go on to next line
      |   ~~~~~^~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp: In function ‘void* open_xsf_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:408:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  408 |         fgets(readbuf, 256, xsf->fd);
      |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:442:20: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  442 |               fgets(readbuf, 256, xsf->fd);
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:444:20: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  444 |               fgets(readbuf, 256, xsf->fd);
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:446:20: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  446 |               fgets(readbuf, 256, xsf->fd);
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:448:20: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  448 |               fgets(readbuf, 256, xsf->fd);
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:450:20: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  450 |               fgets(readbuf, 256, xsf->fd);
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:473:22: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  473 |                 fgets(readbuf, 256, xsf->fd);
      |                 ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:508:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  508 |           fgets(readbuf, 256, xsf->fd);
      |           ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:37:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h: At global scope:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: ‘int get_pte_idx_from_string(const char*)’ defined but not used [-Wunused-function]
  160 | static int get_pte_idx_from_string(const char *label) {
      |            ^~~~~~~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Parse.cpp -o build/temp.linux-x86_64-cpython-311/layer0/Parse.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp: In function ‘read_xsf_structure(void*, int*, molfile_atom_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:597:20: warning: ‘strncpy’ output may be truncated copying 16 bytes from a string of length 1023 [-Wstringop-truncation]
  597 |             strncpy(atom->name, buffer, sizeof(atom->name));
      |                    ^
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp: In function ‘open_xsf_read(char const*, char const*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:438:22: warning: ‘strncpy’ output may be truncated copying 255 bytes from a string of length 255 [-Wstringop-truncation]
  438 |               strncpy(set->dataname, readbuf, 255);
      |                      ^
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Pixmap.cpp -o build/temp.linux-x86_64-cpython-311/layer0/Pixmap.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In file included from contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c:57:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: ‘get_pte_idx_from_string’ defined but not used [-Wunused-function]
  160 | static int get_pte_idx_from_string(const char *label) {
      |            ^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c: In function ‘read_xyz_structure’:
contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c:133:7: warning: ‘strncpy’ output may be truncated copying 16 bytes from a string of length 1023 [-Wstringop-truncation]
  133 |       strncpy(atom->name, buffer, sizeof(atom->name));
      |       ^
contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c:127:7: warning: ‘strncpy’ specified bound 16 equals destination size [-Wstringop-truncation]
  127 |       strncpy(atom->name, get_pte_label(idx), sizeof(atom->name));
      |       ^
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Block.cpp -o build/temp.linux-x86_64-cpython-311/layer0/Block.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/PostProcess.cpp -o build/temp.linux-x86_64-cpython-311/layer0/PostProcess.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/CarveHelper.cpp -o build/temp.linux-x86_64-cpython-311/layer0/CarveHelper.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/ShaderMgr.cpp -o build/temp.linux-x86_64-cpython-311/layer0/ShaderMgr.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In file included from layer0/CarveHelper.cpp:8:
layer0/CarveHelper.h: In constructor ‘CarveHelper::CarveHelper(PyMOLGlobals*, float, const float*, std::size_t)’:
layer0/CarveHelper.h:23:9: warning: ‘CarveHelper::m_cutoff’ will be initialized after [-Wreorder]
   23 |   float m_cutoff;
      |         ^~~~~~~~
layer0/CarveHelper.h:22:16: warning:   ‘const float* CarveHelper::m_vertices’ [-Wreorder]
   22 |   const float* m_vertices;
      |                ^~~~~~~~~~
layer0/CarveHelper.cpp:20:1: warning:   when initialized here [-Wreorder]
   20 | CarveHelper::CarveHelper(PyMOLGlobals* G, float cutoff, const float* vertices,
      | ^~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/ContourSurf.cpp -o build/temp.linux-x86_64-cpython-311/layer0/ContourSurf.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In file included from /usr/include/c++/12/cassert:44,
                 from layer0/Field.h:24,
                 from layer0/Isosurf.h:24,
                 from layer0/ContourSurf.cpp:11:
layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = float; SizeTs = {long unsigned int, long unsigned int, long unsigned int}]’:
layer0/Field.h:114:19:   required from ‘T& CField::get(SizeTs ...) [with T = float; SizeTs = {long unsigned int, long unsigned int, long unsigned int}]’
layer0/ContourSurf.cpp:409:37:   required from here
layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare]
  100 |     assert(sizeof...(pos) <= n_dim());
      |            ~~~~~~~~~~~~~~~^~~~~~~~~~
layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = float; SizeTs = {long unsigned int, long unsigned int, long unsigned int, int}]’:
layer0/Field.h:114:19:   required from ‘T& CField::get(SizeTs ...) [with T = float; SizeTs = {long unsigned int, long unsigned int, long unsigned int, int}]’
layer0/ContourSurf.cpp:419:36:   required from here
layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare]
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Crystal.cpp -o build/temp.linux-x86_64-cpython-311/layer0/Crystal.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Deferred.cpp -o build/temp.linux-x86_64-cpython-311/layer0/Deferred.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Err.cpp -o build/temp.linux-x86_64-cpython-311/layer0/Err.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Feedback.cpp -o build/temp.linux-x86_64-cpython-311/layer0/Feedback.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Field.cpp -o build/temp.linux-x86_64-cpython-311/layer0/Field.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer0/Field.cpp: In function ‘PyObject* FieldAsNumPyArray(CField*, short int)’:
layer0/Field.cpp:83:1: warning: label ‘ok_except1’ defined but not used [-Wunused-label]
   83 | ok_except1:
      | ^~~~~~~~~~
layer0/Field.cpp: In function ‘CField* FieldNewFromPyList(PyMOLGlobals*, PyObject*)’:
layer0/Field.cpp:179:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  179 |   ok = ok && I->size() == size;
      |              ~~~~~~~~~~^~~~~~~
In file included from /usr/include/c++/12/cassert:44,
                 from layer0/Field.h:24,
                 from layer0/Field.cpp:26:
layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = float; SizeTs = {int, int, int}]’:
layer0/Field.h:114:19:   required from ‘T& CField::get(SizeTs ...) [with T = float; SizeTs = {int, int, int}]’
layer0/Field.cpp:343:17:   required from here
layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare]
  100 |     assert(sizeof...(pos) <= n_dim());
      |            ~~~~~~~~~~~~~~~^~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/File.cpp -o build/temp.linux-x86_64-cpython-311/layer0/File.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/GenericBuffer.cpp -o build/temp.linux-x86_64-cpython-311/layer0/GenericBuffer.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/GraphicsUtil.cpp -o build/temp.linux-x86_64-cpython-311/layer0/GraphicsUtil.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Isosurf.cpp -o build/temp.linux-x86_64-cpython-311/layer0/Isosurf.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/ShaderPrg.cpp -o build/temp.linux-x86_64-cpython-311/layer0/ShaderPrg.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In file included from /usr/include/c++/12/cassert:44,
                 from layer0/Field.h:24,
                 from layer0/Isosurf.h:24,
                 from layer0/Isosurf.cpp:25:
layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = float; SizeTs = {int, int, int, int}]’:
layer0/Isosurf.cpp:552:24:   required from here
layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare]
  100 |     assert(sizeof...(pos) <= n_dim());
      |            ~~~~~~~~~~~~~~~^~~~~~~~~~
layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = float; SizeTs = {int, int, int}]’:
layer0/Isosurf.cpp:1459:32:   required from here
layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare]
layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = PointType; SizeTs = {int, int, int, int}]’:
layer0/Field.h:134:26:   required from ‘T* CFieldTyped<T>::ptr(SizeTs ...) [with SizeTs = {int, int, int, int}; T = PointType]’
layer0/Isosurf.cpp:1617:19:   required from here
layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare]
layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = int; SizeTs = {int, int, int}]’:
layer0/Field.h:114:19:   required from ‘T& CField::get(SizeTs ...) [with T = int; SizeTs = {int, int, int}]’
layer0/Field.h:144:26:   required from ‘T& CFieldTyped<T>::get(SizeTs ...) [with SizeTs = {int, int, int}; T = int]’
layer0/Isosurf.cpp:1456:15:   required from here
layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare]
layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = int; SizeTs = {int, int, int, int}]’:
layer0/Field.h:114:19:   required from ‘T& CField::get(SizeTs ...) [with T = int; SizeTs = {int, int, int, int}]’
layer0/Field.h:144:26:   required from ‘T& CFieldTyped<T>::get(SizeTs ...) [with SizeTs = {int, int, int, int}; T = int]’
layer0/Isosurf.cpp:1487:13:   required from here
layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare]
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Sphere.cpp -o build/temp.linux-x86_64-cpython-311/layer0/Sphere.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Tetsurf.cpp -o build/temp.linux-x86_64-cpython-311/layer0/Tetsurf.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In file included from /usr/include/c++/12/cassert:44,
                 from layer0/Field.h:24,
                 from layer0/Isosurf.h:24,
                 from layer0/Tetsurf.cpp:24:
layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = float; SizeTs = {int, int, int, int}]’:
layer0/Tetsurf.cpp:802:18:   required from here
layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare]
  100 |     assert(sizeof...(pos) <= n_dim());
      |            ~~~~~~~~~~~~~~~^~~~~~~~~~
layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = PointType; SizeTs = {int, int, int, int}]’:
layer0/Tetsurf.cpp:831:27:   required from here
layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare]
layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = int; SizeTs = {int, int, int}]’:
layer0/Field.h:114:19:   required from ‘T& CField::get(SizeTs ...) [with T = int; SizeTs = {int, int, int}]’
layer0/Tetsurf.cpp:791:16:   required from here
layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare]
layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = float; SizeTs = {int, int, int}]’:
layer0/Field.h:114:19:   required from ‘T& CField::get(SizeTs ...) [with T = float; SizeTs = {int, int, int}]’
layer0/Tetsurf.cpp:822:18:   required from here
layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare]
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Map.cpp -o build/temp.linux-x86_64-cpython-311/layer0/Map.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Match.cpp -o build/temp.linux-x86_64-cpython-311/layer0/Match.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Texture.cpp -o build/temp.linux-x86_64-cpython-311/layer0/Texture.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Matrix.cpp -o build/temp.linux-x86_64-cpython-311/layer0/Matrix.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Tracker.cpp -o build/temp.linux-x86_64-cpython-311/layer0/Tracker.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Triangle.cpp -o build/temp.linux-x86_64-cpython-311/layer0/Triangle.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/MemoryDebug.cpp -o build/temp.linux-x86_64-cpython-311/layer0/MemoryDebug.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer0/MemoryDebug.cpp: In function ‘void* VLADeleteRaw(void*, int, unsigned int)’:
layer0/MemoryDebug.cpp:223:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘ov_size’ {aka ‘long unsigned int’} [-Wsign-compare]
  223 |       if(index < -old_size)
      |          ~~~~~~^~~~~~~~~~~
layer0/MemoryDebug.cpp:235:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘ov_size’ {aka ‘long unsigned int’} [-Wsign-compare]
  235 |        (index < vla->size) && ((count + index) <= vla->size)) {
      |         ~~~~~~^~~~~~~~~~~
layer0/MemoryDebug.cpp: In function ‘void* VLAInsertRaw(void*, int, unsigned int)’:
layer0/MemoryDebug.cpp:256:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘ov_size’ {aka ‘long unsigned int’} [-Wsign-compare]
  256 |       if(index < -old_size)
      |          ~~~~~~^~~~~~~~~~~
layer0/MemoryDebug.cpp:263:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘ov_size’ {aka ‘long unsigned int’} [-Wsign-compare]
  263 |     if(index > old_size)
      |        ~~~~~~^~~~~~~~~~
layer0/MemoryDebug.cpp:266:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘ov_size’ {aka ‘long unsigned int’} [-Wsign-compare]
  266 |     if((index >= 0) && (count > 0) && (index <= old_size)) {
      |                                        ~~~~~~^~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/MemoryUsage.cpp -o build/temp.linux-x86_64-cpython-311/layer0/MemoryUsage.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer0/MemoryUsage.cpp: In function ‘size_t pymol::memory_usage()’:
layer0/MemoryUsage.cpp:38:21: warning: use of assignment suppression and length modifier together in gnu_scanf format [-Wformat=]
   38 |     std::fscanf(fp, "%*zu%zu", &vmRSS);
      |                     ^~~~~~~~~
layer0/MemoryUsage.cpp:38:16: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   38 |     std::fscanf(fp, "%*zu%zu", &vmRSS);
      |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/MyPNG.cpp -o build/temp.linux-x86_64-cpython-311/layer0/MyPNG.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer0/MyPNG.cpp: In function ‘int MyPNGWrite(const char*, const pymol::Image&, float, int, int, float, float, png_outbuf_t*)’:
layer0/MyPNG.cpp:299:20: warning: comparison of integer expressions of different signedness: ‘png_uint_32’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
  299 |       for(k = 0; k < height; k++)
      |                  ~~^~~~~~~~
layer0/MyPNG.cpp:340:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  340 |           for(b = 0; b < height; b++) {
      |                      ~~^~~~~~~~
layer0/MyPNG.cpp:341:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  341 |             for(a = 0; a < width; a++) {
      |                        ~~^~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/FontGLUTHel10.cpp -o build/temp.linux-x86_64-cpython-311/layer1/FontGLUTHel10.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Util.cpp -o build/temp.linux-x86_64-cpython-311/layer0/Util.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/FontGLUTHel12.cpp -o build/temp.linux-x86_64-cpython-311/layer1/FontGLUTHel12.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/FontGLUTHel18.cpp -o build/temp.linux-x86_64-cpython-311/layer1/FontGLUTHel18.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/FontType.cpp -o build/temp.linux-x86_64-cpython-311/layer1/FontType.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Util2.cpp -o build/temp.linux-x86_64-cpython-311/layer0/Util2.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Vector.cpp -o build/temp.linux-x86_64-cpython-311/layer0/Vector.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/Movie.cpp -o build/temp.linux-x86_64-cpython-311/layer1/Movie.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Word.cpp -o build/temp.linux-x86_64-cpython-311/layer0/Word.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/ccealignmodule.cpp -o build/temp.linux-x86_64-cpython-311/layer0/ccealignmodule.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In file included from include/tnt/tnt.h:49,
                 from layer0/ccealignmodule.cpp:39:
include/tnt/tnt_array2d_utils.h: In function ‘std::istream& TNT::operator>>(std::istream&, Array2D<T>&)’:
include/tnt/tnt_array2d_utils.h:62:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
   62 |     for (int i=0; i<M; i++)
      |     ^~~
include/tnt/tnt_array2d_utils.h:68:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
   68 |         A = B;
      |         ^
In file included from include/tnt/tnt.h:50:
include/tnt/tnt_array3d_utils.h: In function ‘std::istream& TNT::operator>>(std::istream&, Array3D<T>&)’:
include/tnt/tnt_array3d_utils.h:47:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
   47 |     for (int i=0; i<M; i++)
      |     ^~~
include/tnt/tnt_array3d_utils.h:52:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
   52 |         A = B;
      |         ^
In file included from include/tnt/tnt.h:56:
include/tnt/tnt_fortran_array2d_utils.h: In function ‘std::istream& TNT::operator>>(std::istream&, Fortran_Array2D<T>&)’:
include/tnt/tnt_fortran_array2d_utils.h:61:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
   61 |     for (int i=1; i<=M; i++)
      |     ^~~
include/tnt/tnt_fortran_array2d_utils.h:67:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
   67 |         A = B;
      |         ^
In file included from include/tnt/tnt.h:57:
include/tnt/tnt_fortran_array3d_utils.h: In function ‘std::istream& TNT::operator>>(std::istream&, Fortran_Array3D<T>&)’:
include/tnt/tnt_fortran_array3d_utils.h:65:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
   65 |     for (int i=1; i<=M; i++)
      |     ^~~
include/tnt/tnt_fortran_array3d_utils.h:70:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
   70 |         A = B;
      |         ^
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/marching_cubes.cpp -o build/temp.linux-x86_64-cpython-311/layer0/marching_cubes.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer0/marching_cubes.cpp: In function ‘mc::Mesh mc::march(const Field&, float, bool)’:
layer0/marching_cubes.cpp:517:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare]
  517 |   for (int z = 0; z < zDim; ++z) {
      |                   ~~^~~~~~
layer0/marching_cubes.cpp:550:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare]
  550 |   for (int z = 0; z < zEnd; ++z) {
      |                   ~~^~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/Ortho.cpp -o build/temp.linux-x86_64-cpython-311/layer1/Ortho.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer0/marching_cubes.cpp:603:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
  603 |           if (z == zEnd - 1) {
      |               ~~^~~~~~~~~~~
layer0/marching_cubes.cpp:608:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
  608 |         if (z == zEnd - 1) {
      |             ~~^~~~~~~~~~~
layer0/marching_cubes.cpp: In function ‘void mc::calculateNormals(Mesh&)’:
layer0/marching_cubes.cpp:681:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  681 |   for (int i = 0; i < vertexCount; ++i) {
      |                   ~~^~~~~~~~~~~~~
layer0/marching_cubes.cpp:686:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  686 |   for (int i = 0; i < triangleCount; ++i) {
      |                   ~~^~~~~~~~~~~~~~~
layer0/marching_cubes.cpp:720:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  720 |   for (int i = 0; i < vertexCount; ++i) {
      |                   ~~^~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/os_gl.cpp -o build/temp.linux-x86_64-cpython-311/layer0/os_gl.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/Basis.cpp -o build/temp.linux-x86_64-cpython-311/layer1/Basis.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer1/Ortho.cpp:783:6: warning: ‘void OrthoKeyCmmd(PyMOLGlobals*, unsigned char)’ defined but not used [-Wunused-function]
  783 | void OrthoKeyCmmd(PyMOLGlobals * G, unsigned char k)
      |      ^~~~~~~~~~~~
In file included from /usr/include/string.h:535,
                 from /usr/include/python3.11/Python.h:26,
                 from layer0/os_python.h:34,
                 from layer1/Ortho.cpp:24:
In function ‘strcat’,
    inlined from ‘OrthoSpecial(PyMOLGlobals*, int, int, int, int)’ at layer1/Ortho.cpp:332:13:
/usr/include/bits/string_fortified.h:130:33: warning: ‘strcat’ accessing 4611686018427387985 or more bytes at offsets [80, 261200] and [-4611686018427387904, 4611686018427387903] may overlap 1 byte at offset [80, 9223372036854775807] [-Wrestrict]
  130 |   return __builtin___strcat_chk (__dest, __src, __glibc_objsize (__dest));
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘strcat’,
    inlined from ‘OrthoSpecial(PyMOLGlobals*, int, int, int, int)’ at layer1/Ortho.cpp:349:13:
/usr/include/bits/string_fortified.h:130:33: warning: ‘strcat’ accessing 4611686018427387985 or more bytes at offsets [80, 261200] and [-4611686018427387904, 4611686018427387903] may overlap 1 byte at offset [80, 9223372036854775807] [-Wrestrict]
  130 |   return __builtin___strcat_chk (__dest, __src, __glibc_objsize (__dest));
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/P.cpp -o build/temp.linux-x86_64-cpython-311/layer1/P.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/ButMode.cpp -o build/temp.linux-x86_64-cpython-311/layer1/ButMode.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In file included from layer1/ButMode.cpp:22:
layer1/ButMode.cpp: In function ‘void ButModeFree(PyMOLGlobals*)’:
layer0/MemoryDebug.h:86:32: warning: deleting object of polymorphic class type ‘CButMode’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
   86 | #define DeleteP(ptr) {if(ptr) {delete ptr;ptr=NULL;}}
layer1/ButMode.cpp:144:3: note: in expansion of macro ‘DeleteP’
  144 |   DeleteP(G->ButMode);
      |   ^~~~~~~
layer1/P.cpp: In function ‘int WrapperObjectAssignSubScript(PyObject*, PyObject*, PyObject*)’:
layer1/P.cpp:825:26: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare]
  825 |       if (strlen(valstr) > ap->maxlen) {
      |           ~~~~~~~~~~~~~~~^~~~~~~~~~~~
layer1/P.cpp:849:18: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare]
  849 |       if (valint == -1 && PyErr_Occurred())
      |           ~~~~~~~^~~~~
layer1/P.cpp: In function ‘int PAutoBlock(PyMOLGlobals*)’:
layer1/P.cpp:2288:27: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘long unsigned int’ [-Wsign-compare]
 2288 |     if (SavedThread[a].id == id) {
      |         ~~~~~~~~~~~~~~~~~~^~~~~
layer1/P.cpp: In function ‘int PIsGlutThread()’:
layer1/P.cpp:2314:39: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘long int’ [-Wsign-compare]
 2314 |   return (PyThread_get_thread_ident() == P_glut_thread_id);
      |           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
layer1/P.cpp: At global scope:
layer1/P.cpp:2422:13: warning: ‘void PLockAPIWhileBlocked(PyMOLGlobals*)’ defined but not used [-Wunused-function]
 2422 | static void PLockAPIWhileBlocked(PyMOLGlobals * G)
      |             ^~~~~~~~~~~~~~~~~~~~
layer1/P.cpp:2411:13: warning: ‘void PUnlockAPIWhileBlocked(PyMOLGlobals*)’ defined but not used [-Wunused-function]
 2411 | static void PUnlockAPIWhileBlocked(PyMOLGlobals * G)
      |             ^~~~~~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/CGO.cpp -o build/temp.linux-x86_64-cpython-311/layer1/CGO.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer1/P.cpp: In function ‘PLabelAtomAlt(PyMOLGlobals*, AtomInfoType*, char const*, char const*, int)’:
layer1/P.cpp:322:12: warning: ‘strncpy’ specified bound 1024 equals destination size [-Wstringop-truncation]
  322 |     strncpy(label, origexpr, OrthoLineLength);
      |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/PConv.cpp -o build/temp.linux-x86_64-cpython-311/layer1/PConv.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer1/CGO.cpp: In function ‘void CheckAttributesForUsage(const CGO*, AttribDataDesc&, AttribDataDesc&, CGO*, bool&)’:
layer1/CGO.cpp:10842:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
10842 |     for (auto idx = 0; idx < attrIdx; ++idx){
      |                        ~~~~^~~~~~~~~
layer1/CGO.cpp: In function ‘void PopulateOpsIntoStructuresForConversion(std::map<int, int>&, std::map<int, std::map<int, AttribOp*> >&, AttribDataDesc&, AttribDataDesc&, int&, bool)’:
layer1/CGO.cpp:10920:37: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
10920 |           if (attrOp->incr_vertices != vertsperpickinfo){
      |               ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
layer1/CGO.cpp: In function ‘CGO* CGOConvertToShader(const CGO*, AttribDataDesc&, AttribDataDesc&, int, GenericBuffer<34962>::buffer_layout, bool, int*, int, int)’:
layer1/CGO.cpp:11222:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<AttribDesc>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
11222 |             for (auto idx = 0; idx < attrData.size(); ++idx){
      |                                ~~~~^~~~~~~~~~~~~~~~~
layer1/CGO.cpp:11234:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<AttribDesc>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
11234 |             for (auto idx = 0; idx < attrData.size(); ++idx){
      |                                ~~~~^~~~~~~~~~~~~~~~~
layer1/CGO.cpp:11243:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
11243 |           for (int nxt = 0; nxt < attribOp->incr_vertices; ++nxt){
      |                             ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
layer1/PConv.cpp: In function ‘int PConvPyListToBitmask(PyObject*, int*, ov_size)’:
layer1/PConv.cpp:83:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘ov_size’ {aka ‘long unsigned int’} [-Wsign-compare]
   83 |   for(int i = 0; i < ll; i++)
      |                  ~~^~~~
layer1/PConv.cpp: In function ‘PyObject* PConvLabPosVecToPyList(const std::vector<LabPosType>&)’:
layer1/PConv.cpp:1194:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<LabPosType>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1194 |     for (int a = 0; a < vec.size(); a++) {
      |                     ~~^~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/Picking.cpp -o build/temp.linux-x86_64-cpython-311/layer1/Picking.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/Pop.cpp -o build/temp.linux-x86_64-cpython-311/layer1/Pop.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In file included from layer1/Pop.cpp:22:
layer1/Pop.cpp: In function ‘void PopFree(PyMOLGlobals*)’:
layer0/MemoryDebug.h:86:32: warning: deleting object of polymorphic class type ‘CPop’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
   86 | #define DeleteP(ptr) {if(ptr) {delete ptr;ptr=NULL;}}
layer1/Pop.cpp:54:3: note: in expansion of macro ‘DeleteP’
   54 |   DeleteP(G->Pop);
      |   ^~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/PyMOLObject.cpp -o build/temp.linux-x86_64-cpython-311/layer1/PyMOLObject.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/Ray.cpp -o build/temp.linux-x86_64-cpython-311/layer1/Ray.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer1/Ray.cpp: In function ‘void RayRender(CRay*, unsigned int*, double, float, int, unsigned int*)’:
layer1/Ray.cpp:6065:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
 6065 |       if(x_stop > width)
      |          ~~~~~~~^~~~~~~
layer1/Ray.cpp:6067:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
 6067 |       if(y_stop > height)
      |          ~~~~~~~^~~~~~~~
layer1/Ray.cpp:6148:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
 6148 |       for(y = 0; y < height; y++)
      |                  ~~^~~~~~~~
layer1/Ray.cpp:6149:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
 6149 |         for(x = 0; x < width; x++) {
      |                    ~~^~~~~~~
layer1/Ray.cpp:6160:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
 6160 |           if(x < (width - 1)) {
      |              ~~^~~~~~~~~~~~~
layer1/Ray.cpp:6171:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
 6171 |           if(y < (height - 1)) {
      |              ~~^~~~~~~~~~~~~~
layer1/Ray.cpp:6232:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
 6232 |             for(y = 0; y < height; y++)
      |                        ~~^~~~~~~~
layer1/Ray.cpp:6233:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
 6233 |               for(x = 0; x < width; x++) {
      |                          ~~^~~~~~~
layer1/Ray.cpp:6243:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
 6243 |                   if(x < (width - 1)) {
      |                      ~~^~~~~~~~~~~~~
layer1/Ray.cpp:6255:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
 6255 |                   if(y < (height - 1)) {
      |                      ~~^~~~~~~~~~~~~~
layer1/Ray.cpp:6306:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
 6306 |           for(y = 0; y < height; y++){
      |                      ~~^~~~~~~~
layer1/Ray.cpp:6326:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
 6326 |             for(x = 0; x < width; x++) {
      |                        ~~^~~~~~~
layer1/Ray.cpp:6345:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
 6345 |                   if(x < (width - 1)) {
      |                      ~~^~~~~~~~~~~~~
layer1/Ray.cpp:6359:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
 6359 |                   if(y < (height - 1)) {
      |                      ~~^~~~~~~~~~~~~~
layer1/Ray.cpp:6373:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
 6373 |                   if(x && (y < (height - 1))) {
      |                            ~~^~~~~~~~~~~~~~
layer1/Ray.cpp:6380:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
 6380 |                   if(y && (x < (width - 1))) {
      |                            ~~^~~~~~~~~~~~~
layer1/Ray.cpp:6387:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
 6387 |                   if((y < (height - 1)) && (x < (width - 1))) {
      |                       ~~^~~~~~~~~~~~~~
layer1/Ray.cpp:6387:47: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
 6387 |                   if((y < (height - 1)) && (x < (width - 1))) {
      |                                             ~~^~~~~~~~~~~~~
layer1/Ray.cpp:6543:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
 6543 |       for(y = 0; y < height; y++) {
      |                  ~~^~~~~~~~
layer1/Ray.cpp:6544:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
 6544 |         for(x = 0; x < width; x++) {
      |                    ~~^~~~~~~
layer1/Ray.cpp: In function ‘RayRenderVRML2(_CRay*, int, int, char**, float, float, float, float, float)’:
layer1/Ray.cpp:1535:20: warning: ‘%s’ directive writing up to 1023 bytes into a region of size between 0 and 914 [-Wformat-overflow=]
 1535 |                   "%s"
      |                    ^~
......
 1540 |                   vert2[2] - mid[2], axis[0], axis[1], axis[2], angle, geometry);
      |                                                                        ~~~~~~~~
layer1/Ray.cpp:1530:18: note: ‘sprintf’ output between 116 and 3302 bytes into a destination of size 1024
 1530 |           sprintf(buffer,
      |           ~~~~~~~^~~~~~~~
 1531 |                   "Transform {\n"
      |                   ~~~~~~~~~~~~~~~
 1532 |                   " translation %8.6f %8.6f %8.6f\n"
      |                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1533 |                   " rotation %8.6f %8.6f %8.6f %8.6f\n"
      |                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1534 |                   " children [\n"
      |                   ~~~~~~~~~~~~~~~
 1535 |                   "%s"
      |                   ~~~~
 1536 |                   " ]\n"
      |                   ~~~~~~
 1537 |                   "}\n",
      |                   ~~~~~~
 1538 |                   vert2[0] - mid[0],
      |                   ~~~~~~~~~~~~~~~~~~
 1539 |                   vert2[1] - mid[1],
      |                   ~~~~~~~~~~~~~~~~~~
 1540 |                   vert2[2] - mid[2], axis[0], axis[1], axis[2], angle, geometry);
      |                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer1/Ray.cpp: In member function ‘_CRay::triangle3fv(float const*, float const*, float const*, float const*, float const*, float const*, float const*, float const*, float const*)’:
layer1/Ray.cpp:7312:36: warning: ‘MEM[(float *)&nx]’ may be used uninitialized [-Wmaybe-uninitialized]
 7312 |   float n0[3] = { 0.f, 0.f, 1.f }, nx[3], s1[3], s2[3], s3[3];
      |                                    ^~
layer1/Ray.cpp:7312:36: warning: ‘MEM[(float *)&nx + 4B]’ may be used uninitialized [-Wmaybe-uninitialized]
layer1/Ray.cpp: In function ‘RayTraceThread(_CRayThreadInfo*)’:
layer1/Ray.cpp:3606:39: warning: ‘hl’ may be used uninitialized [-Wmaybe-uninitialized]
 3606 |           compute_background_for_pixel(bkrd_uc, isOutsideInY,
      |           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
 3607 |               bg_image_mode, bg_image_tilesize, bg_rgb, bg_image_linear,
      |               ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 3608 |               (unsigned char*) T->bkrd_data, T->bgWidth, T->bgHeight,
      |               ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 3609 |               x, wr, hl, hpixelx, orig_opaque_back );
      |               ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer1/Ray.cpp:3269:9: note: ‘hl’ was declared here
 3269 |   float hl;
      |         ^~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/Rep.cpp -o build/temp.linux-x86_64-cpython-311/layer1/Rep.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/Scene.cpp -o build/temp.linux-x86_64-cpython-311/layer1/Scene.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer1/Scene.cpp: In function ‘int SceneViewEqual(float*, float*)’:
layer1/Scene.cpp:127:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const std::size_t’ {aka ‘const long unsigned int’} [-Wsign-compare]
  127 |   for(i = 0; i < cSceneViewSize; i++) {
      |              ~~^~~~~~~~~~~~~~~~
layer1/Scene.cpp: In function ‘void SceneFree(PyMOLGlobals*)’:
layer1/Scene.cpp:4071:3: warning: deleting object of polymorphic class type ‘CScene’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
 4071 |   delete G->Scene;
      |   ^~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/COLLADA.cpp -o build/temp.linux-x86_64-cpython-311/layer1/COLLADA.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/SceneMouse.cpp -o build/temp.linux-x86_64-cpython-311/layer1/SceneMouse.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer1/SceneMouse.cpp: In function ‘void SceneClickPickBond(PyMOLGlobals*, int, int, int, const NamedPicking&)’:
layer1/SceneMouse.cpp:513:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare]
  513 |     if (atIndex == LastPicked.src.index)
      |         ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/Character.cpp -o build/temp.linux-x86_64-cpython-311/layer1/Character.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer1/SceneMouse.cpp: In function ‘SceneClickTransformObject(PyMOLGlobals*, pymol::CObject*, NamedPicking const&, int, bool)’:
layer1/SceneMouse.cpp:455:32: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 237 [-Wformat-truncation=]
  455 |           " You clicked %s -> (%s)\n", buffer.c_str(), name ENDFB(G);
      |                                ^~                      ~~~~
In file included from /usr/include/stdio.h:906,
                 from /usr/include/c++/12/cstdio:42,
                 from /usr/include/c++/12/ext/string_conversions.h:43,
                 from /usr/include/c++/12/bits/basic_string.h:3960,
                 from /usr/include/c++/12/string:53,
                 from /usr/include/c++/12/bits/locale_classes.h:40,
                 from /usr/include/c++/12/bits/ios_base.h:41,
                 from /usr/include/c++/12/ios:42,
                 from /usr/include/c++/12/ostream:38,
                 from include/pymol/zstring_view.h:12,
                 from layer1/SceneMouse.h:4,
                 from layer1/SceneMouse.cpp:1:
In function ‘snprintf’,
    inlined from ‘SceneClickTransformObject(PyMOLGlobals*, pymol::CObject*, NamedPicking const&, int, bool)’ at layer1/SceneMouse.cpp:454:11:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output 21 or more bytes (assuming 276) into a destination of size 255
   54 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   55 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   56 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/Color.cpp -o build/temp.linux-x86_64-cpython-311/layer1/Color.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/ScenePicking.cpp -o build/temp.linux-x86_64-cpython-311/layer1/ScenePicking.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer1/Color.cpp: In function ‘ObjectGadgetRamp* ColorGetRamp(PyMOLGlobals*, int)’:
layer1/Color.cpp:180:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ExtRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  180 |     if (index < I->Ext.size()) {
      |         ~~~~~~^~~~~~~~~~~~~~~
layer1/Color.cpp: In function ‘int ColorExtFromPyList(PyMOLGlobals*, PyObject*, int)’:
layer1/Color.cpp:501:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  501 |   for (int a = 0; a < n_ext; ++a) {
      |                   ~~^~~~~~~
In file included from /usr/include/c++/12/cassert:44,
                 from /usr/include/glm/detail/setup.hpp:3,
                 from /usr/include/glm/detail/qualifier.hpp:3,
                 from /usr/include/glm/detail/type_vec2.hpp:6,
                 from /usr/include/glm/ext/vector_bool2.hpp:5,
                 from /usr/include/glm/vec2.hpp:5,
                 from layer0/GenericBuffer.h:12,
                 from layer0/ShaderMgr.h:24,
                 from layer1/Scene.h:29,
                 from layer3/Executive.h:35,
                 from layer1/Color.cpp:31:
layer1/Color.cpp:515:18: warning: comparison of integer expressions of different signedness: ‘const int’ and ‘std::vector<ExtRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  515 |     assert(a_new <= I->Ext.size());
      |            ~~~~~~^~~~~~~~~~~~~~~~
layer1/Color.cpp:518:15: warning: comparison of integer expressions of different signedness: ‘const int’ and ‘std::vector<ExtRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  518 |     if (a_new == I->Ext.size()) {
      |         ~~~~~~^~~~~~~~~~~~~~~~
layer1/Color.cpp: In function ‘int ColorFromPyList(PyMOLGlobals*, PyObject*, int)’:
layer1/Color.cpp:569:44: warning: comparison of integer expressions of different signedness: ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  569 |     if (partial_restore && I->Color.size() > index) {
      |                            ~~~~~~~~~~~~~~~~^~~~~~~
layer1/Color.cpp:575:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  575 |     if (index >= I->Color.size()) {
      |         ~~~~~~^~~~~~~~~~~~~~~~~~
layer1/Color.cpp:576:30: warning: comparison of integer expressions of different signedness: ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  576 |       assert(I->Color.size() == index);
      |              ~~~~~~~~~~~~~~~~^~~~~~~~
layer1/Color.cpp: In function ‘int ColorGetIndex(PyMOLGlobals*, const char*)’:
layer1/Color.cpp:683:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  683 |       if((i < I->Color.size()) && (i >= 0))
      |           ~~^~~~~~~~~~~~~~~~~
layer1/Color.cpp: In function ‘const char* ColorGetName(PyMOLGlobals*, int)’:
layer1/Color.cpp:764:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  764 |   if((index >= 0) && (index < I->Color.size())) {
      |                       ~~~~~~^~~~~~~~~~~~~~~~~
layer1/Color.cpp:776:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ExtRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  776 |     if (a < I->Ext.size()) {
      |         ~~^~~~~~~~~~~~~~~
layer1/Color.cpp: In function ‘int ColorGetStatus(PyMOLGlobals*, int)’:
layer1/Color.cpp:792:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  792 |   if((index >= 0) && (index < I->Color.size())) {
      |                       ~~~~~~^~~~~~~~~~~~~~~~~
layer1/Color.cpp: In function ‘void ColorReset(PyMOLGlobals*)’:
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1026:3: note: in expansion of macro ‘reg_named_color’
 1026 |   reg_named_color("white", 1.F, 1.F, 1.F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1027:3: note: in expansion of macro ‘reg_named_color’
 1027 |   reg_named_color("black", 0.F, 0.F, 0.F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1028:3: note: in expansion of macro ‘reg_named_color’
 1028 |   reg_named_color("blue", 0.F, 0.F, 1.F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1029:3: note: in expansion of macro ‘reg_named_color’
 1029 |   reg_named_color("green", 0.F, 1.F, 0.F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1030:3: note: in expansion of macro ‘reg_named_color’
 1030 |   reg_named_color("red", 1.F, 0.F, 0.F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1031:3: note: in expansion of macro ‘reg_named_color’
 1031 |   reg_named_color("cyan", 0.F, 1.F, 1.F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1032:3: note: in expansion of macro ‘reg_named_color’
 1032 |   reg_named_color("yellow", 1.F, 1.F, 0.F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1033:3: note: in expansion of macro ‘reg_named_color’
 1033 |   reg_named_color("dash", 1.F, 1.F, 0.F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1034:3: note: in expansion of macro ‘reg_named_color’
 1034 |   reg_named_color("magenta", 1.F, 0.F, 1.F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1035:3: note: in expansion of macro ‘reg_named_color’
 1035 |   reg_named_color("salmon", 1.F, 0.6F, 0.6F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1036:3: note: in expansion of macro ‘reg_named_color’
 1036 |   reg_named_color("lime", 0.5F, 1.F, 0.5F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1037:3: note: in expansion of macro ‘reg_named_color’
 1037 |   reg_named_color("slate", 0.5F, 0.5F, 1.F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1038:3: note: in expansion of macro ‘reg_named_color’
 1038 |   reg_named_color("hotpink", 1.F, 0.F, 0.5F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1039:3: note: in expansion of macro ‘reg_named_color’
 1039 |   reg_named_color("orange", 1.F, 0.5F, 0.F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1040:3: note: in expansion of macro ‘reg_named_color’
 1040 |   reg_named_color("chartreuse", 0.5F, 1.F, 0.F); /* AKA puke green */
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1041:3: note: in expansion of macro ‘reg_named_color’
 1041 |   reg_named_color("limegreen", 0.F, 1.F, 0.5F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1042:3: note: in expansion of macro ‘reg_named_color’
 1042 |   reg_named_color("purpleblue", 0.5F, 0.F, 1.F); /* legacy name */
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1043:3: note: in expansion of macro ‘reg_named_color’
 1043 |   reg_named_color("marine", 0.F, 0.5F, 1.F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1044:3: note: in expansion of macro ‘reg_named_color’
 1044 |   reg_named_color("olive", 0.77F, 0.7F, 0.F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1045:3: note: in expansion of macro ‘reg_named_color’
 1045 |   reg_named_color("purple", 0.75F, 0.F, 0.75F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1046:3: note: in expansion of macro ‘reg_named_color’
 1046 |   reg_named_color("teal", 0.F, 0.75F, 0.75F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1047:3: note: in expansion of macro ‘reg_named_color’
 1047 |   reg_named_color("ruby", 0.6F, 0.2F, 0.2F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1048:3: note: in expansion of macro ‘reg_named_color’
 1048 |   reg_named_color("forest", 0.2F, 0.6F, 0.2F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1049:3: note: in expansion of macro ‘reg_named_color’
 1049 |   reg_named_color("deepblue", 0.25F, 0.25F, 0.65F); /* was "deep" */
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1050:3: note: in expansion of macro ‘reg_named_color’
 1050 |   reg_named_color("grey", 0.5F, 0.5F, 0.5F); /* english spelling */
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1051:3: note: in expansion of macro ‘reg_named_color’
 1051 |   reg_named_color("gray", 0.5F, 0.5F, 0.5F); /* american spelling */
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1052:3: note: in expansion of macro ‘reg_named_color’
 1052 |   reg_named_color("carbon", 0.2F, 1.F, 0.2F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1053:3: note: in expansion of macro ‘reg_named_color’
 1053 |   reg_named_color("nitrogen", 0.2F, 0.2F, 1.F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1054:3: note: in expansion of macro ‘reg_named_color’
 1054 |   reg_named_color("oxygen", 1.F, 0.3F, 0.3F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1055:3: note: in expansion of macro ‘reg_named_color’
 1055 |   reg_named_color("hydrogen", 0.9F, 0.9F, 0.9F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1056:3: note: in expansion of macro ‘reg_named_color’
 1056 |   reg_named_color("brightorange", 1.F, 0.7F, 0.2F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1057:3: note: in expansion of macro ‘reg_named_color’
 1057 |   reg_named_color("sulfur", 0.9F, 0.775F, 0.25F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1058:3: note: in expansion of macro ‘reg_named_color’
 1058 |   reg_named_color("tv_red", 1.F, 0.2F, 0.2F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1059:3: note: in expansion of macro ‘reg_named_color’
 1059 |   reg_named_color("tv_green", 0.2F, 1.F, 0.2F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1060:3: note: in expansion of macro ‘reg_named_color’
 1060 |   reg_named_color("tv_blue", 0.3F, 0.3F, 1.F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1061:3: note: in expansion of macro ‘reg_named_color’
 1061 |   reg_named_color("tv_yellow", 1.F, 1.F, 0.2F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1062:3: note: in expansion of macro ‘reg_named_color’
 1062 |   reg_named_color("yelloworange", 1.F, 0.87F, 0.37F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1063:3: note: in expansion of macro ‘reg_named_color’
 1063 |   reg_named_color("tv_orange", 1.F, 0.55F, 0.15F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1064:3: note: in expansion of macro ‘reg_named_color’
 1064 |   reg_named_color("br0", 0.1F, 0.1F, 1.F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1065:3: note: in expansion of macro ‘reg_named_color’
 1065 |   reg_named_color("br1", 0.2F, 0.1F, 0.9F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1066:3: note: in expansion of macro ‘reg_named_color’
 1066 |   reg_named_color("br2", 0.3F, 0.1F, 0.8F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1067:3: note: in expansion of macro ‘reg_named_color’
 1067 |   reg_named_color("br3", 0.4F, 0.1F, 0.7F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1068:3: note: in expansion of macro ‘reg_named_color’
 1068 |   reg_named_color("br4", 0.5F, 0.1F, 0.6F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1069:3: note: in expansion of macro ‘reg_named_color’
 1069 |   reg_named_color("br5", 0.6F, 0.1F, 0.5F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1070:3: note: in expansion of macro ‘reg_named_color’
 1070 |   reg_named_color("br6", 0.7F, 0.1F, 0.4F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1071:3: note: in expansion of macro ‘reg_named_color’
 1071 |   reg_named_color("br7", 0.8F, 0.1F, 0.3F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1072:3: note: in expansion of macro ‘reg_named_color’
 1072 |   reg_named_color("br8", 0.9F, 0.1F, 0.2F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1073:3: note: in expansion of macro ‘reg_named_color’
 1073 |   reg_named_color("br9", 1.F, 0.1F, 0.1F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1074:3: note: in expansion of macro ‘reg_named_color’
 1074 |   reg_named_color("pink", 1.F, 0.65F, 0.85F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1075:3: note: in expansion of macro ‘reg_named_color’
 1075 |   reg_named_color("firebrick", 0.698F, 0.13F, 0.13F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1076:3: note: in expansion of macro ‘reg_named_color’
 1076 |   reg_named_color("chocolate", 0.555F, 0.222F, 0.111F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1077:3: note: in expansion of macro ‘reg_named_color’
 1077 |   reg_named_color("brown", 0.65F, 0.32F, 0.17F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1078:3: note: in expansion of macro ‘reg_named_color’
 1078 |   reg_named_color("wheat", 0.99F, 0.82F, 0.65F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1079:3: note: in expansion of macro ‘reg_named_color’
 1079 |   reg_named_color("violet", 1.F, 0.5F, 1.F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1088:5: note: in expansion of macro ‘reg_named_color’
 1088 |     reg_named_color(name, a / 99.F, a / 99.F, a / 99.F);
      |     ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1091:3: note: in expansion of macro ‘reg_named_color’
 1091 |   reg_named_color("lightmagenta", 1.F, 0.2F, 0.8F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1105:5: note: in expansion of macro ‘reg_named_color’
 1105 |     reg_named_color(name,
      |     ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1121:5: note: in expansion of macro ‘reg_named_color’
 1121 |     reg_named_color(name,
      |     ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1137:5: note: in expansion of macro ‘reg_named_color’
 1137 |     reg_named_color(name,
      |     ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1155:5: note: in expansion of macro ‘reg_named_color’
 1155 |     reg_named_color(name,
      |     ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1161:3: note: in expansion of macro ‘reg_named_color’
 1161 |   reg_named_color("density", 0.1F, 0.1F, 0.6F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1168:5: note: in expansion of macro ‘reg_named_color’
 1168 |     reg_named_color(name, a / 99.F, a / 99.F, a / 99.F);
      |     ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1183:5: note: in expansion of macro ‘reg_named_color’
 1183 |     reg_named_color(name,
      |     ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1189:3: note: in expansion of macro ‘reg_named_color’
 1189 |   reg_named_color("paleyellow", 1.F, 1.F, 0.5F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1190:3: note: in expansion of macro ‘reg_named_color’
 1190 |   reg_named_color("aquamarine", 0.5F, 1.F, 1.F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1191:3: note: in expansion of macro ‘reg_named_color’
 1191 |   reg_named_color("deepsalmon", 1.F, 0.5F, 0.5F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1192:3: note: in expansion of macro ‘reg_named_color’
 1192 |   reg_named_color("palegreen", 0.65F, 0.9F, 0.65F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1193:3: note: in expansion of macro ‘reg_named_color’
 1193 |   reg_named_color("deepolive", 0.6F, 0.6F, 0.1F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1194:3: note: in expansion of macro ‘reg_named_color’
 1194 |   reg_named_color("deeppurple", 0.6F, 0.1F, 0.6F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1195:3: note: in expansion of macro ‘reg_named_color’
 1195 |   reg_named_color("deepteal", 0.1F, 0.6F, 0.6F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1196:3: note: in expansion of macro ‘reg_named_color’
 1196 |   reg_named_color("lightblue", 0.75F, 0.75F, 1.F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1197:3: note: in expansion of macro ‘reg_named_color’
 1197 |   reg_named_color("lightorange", 1.F, 0.8F, 0.5F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1198:3: note: in expansion of macro ‘reg_named_color’
 1198 |   reg_named_color("palecyan", 0.8F, 1.F, 1.F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1199:3: note: in expansion of macro ‘reg_named_color’
 1199 |   reg_named_color("lightteal", 0.4F, 0.7F, 0.7F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1200:3: note: in expansion of macro ‘reg_named_color’
 1200 |   reg_named_color("splitpea", 0.52F, 0.75F, 0.F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1201:3: note: in expansion of macro ‘reg_named_color’
 1201 |   reg_named_color("raspberry", 0.7F, 0.3F, 0.4F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1202:3: note: in expansion of macro ‘reg_named_color’
 1202 |   reg_named_color("sand", 0.72F, 0.55F, 0.3F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1203:3: note: in expansion of macro ‘reg_named_color’
 1203 |   reg_named_color("smudge", 0.55F, 0.7F, 0.4F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1204:3: note: in expansion of macro ‘reg_named_color’
 1204 |   reg_named_color("violetpurple", 0.55F, 0.25F, 0.6F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1205:3: note: in expansion of macro ‘reg_named_color’
 1205 |   reg_named_color("dirtyviolet", 0.7F, 0.5F, 0.5F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1208:3: note: in expansion of macro ‘reg_named_color’
 1208 |   reg_named_color("_deepsalmon", 1.F, 0.42F, 0.42F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1210:3: note: in expansion of macro ‘reg_named_color’
 1210 |   reg_named_color("lightpink", 1.F, 0.75F, 0.87F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1211:3: note: in expansion of macro ‘reg_named_color’
 1211 |   reg_named_color("greencyan", 0.25F, 1.F, 0.75F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1212:3: note: in expansion of macro ‘reg_named_color’
 1212 |   reg_named_color("limon", 0.75F, 1.F, 0.25F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1213:3: note: in expansion of macro ‘reg_named_color’
 1213 |   reg_named_color("skyblue", 0.2F, 0.5F, 0.8F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1214:3: note: in expansion of macro ‘reg_named_color’
 1214 |   reg_named_color("bluewhite", 0.85F, 0.85F, 1.F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1215:3: note: in expansion of macro ‘reg_named_color’
 1215 |   reg_named_color("warmpink", 0.85F, 0.2F, 0.5F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1216:3: note: in expansion of macro ‘reg_named_color’
 1216 |   reg_named_color("darksalmon", 0.73F, 0.55F, 0.52F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1217:3: note: in expansion of macro ‘reg_named_color’
 1217 |   reg_named_color("helium", 0.850980392F, 1.F, 1.F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1218:3: note: in expansion of macro ‘reg_named_color’
 1218 |   reg_named_color("lithium", 0.8F, 0.501960784F, 1.F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1219:3: note: in expansion of macro ‘reg_named_color’
 1219 |   reg_named_color("beryllium", 0.760784314F, 1.F, 0.F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1220:3: note: in expansion of macro ‘reg_named_color’
 1220 |   reg_named_color("boron", 1.F, 0.709803922F, 0.709803922F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1221:3: note: in expansion of macro ‘reg_named_color’
 1221 |   reg_named_color("fluorine", 0.701960784F, 1.F, 1.F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1222:3: note: in expansion of macro ‘reg_named_color’
 1222 |   reg_named_color("neon", 0.701960784F, 0.890196078F, 0.960784314F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1223:3: note: in expansion of macro ‘reg_named_color’
 1223 |   reg_named_color("sodium", 0.670588235F, 0.360784314F, 0.949019608F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1224:3: note: in expansion of macro ‘reg_named_color’
 1224 |   reg_named_color("magnesium", 0.541176471F, 1.F, 0.F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1225:3: note: in expansion of macro ‘reg_named_color’
 1225 |   reg_named_color("aluminum", 0.749019608F, 0.650980392F, 0.650980392F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1226:3: note: in expansion of macro ‘reg_named_color’
 1226 |   reg_named_color("silicon", 0.941176471F, 0.784313725F, 0.62745098F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1227:3: note: in expansion of macro ‘reg_named_color’
 1227 |   reg_named_color("phosphorus", 1.F, 0.501960784F, 0.F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1228:3: note: in expansion of macro ‘reg_named_color’
 1228 |   reg_named_color("chlorine", 0.121568627F, 0.941176471F, 0.121568627F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1229:3: note: in expansion of macro ‘reg_named_color’
 1229 |   reg_named_color("argon", 0.501960784F, 0.819607843F, 0.890196078F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1230:3: note: in expansion of macro ‘reg_named_color’
 1230 |   reg_named_color("potassium", 0.560784314F, 0.250980392F, 0.831372549F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1231:3: note: in expansion of macro ‘reg_named_color’
 1231 |   reg_named_color("calcium", 0.239215686F, 1.F, 0.F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1232:3: note: in expansion of macro ‘reg_named_color’
 1232 |   reg_named_color("scandium", 0.901960784F, 0.901960784F, 0.901960784F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1233:3: note: in expansion of macro ‘reg_named_color’
 1233 |   reg_named_color("titanium", 0.749019608F, 0.760784314F, 0.780392157F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1234:3: note: in expansion of macro ‘reg_named_color’
 1234 |   reg_named_color("vanadium", 0.650980392F, 0.650980392F, 0.670588235F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1235:3: note: in expansion of macro ‘reg_named_color’
 1235 |   reg_named_color("chromium", 0.541176471F, 0.6F, 0.780392157F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1236:3: note: in expansion of macro ‘reg_named_color’
 1236 |   reg_named_color("manganese", 0.611764706F, 0.478431373F, 0.780392157F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1237:3: note: in expansion of macro ‘reg_named_color’
 1237 |   reg_named_color("iron", 0.878431373F, 0.4F, 0.2F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1238:3: note: in expansion of macro ‘reg_named_color’
 1238 |   reg_named_color("cobalt", 0.941176471F, 0.564705882F, 0.62745098F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1239:3: note: in expansion of macro ‘reg_named_color’
 1239 |   reg_named_color("nickel", 0.31372549F, 0.815686275F, 0.31372549F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1240:3: note: in expansion of macro ‘reg_named_color’
 1240 |   reg_named_color("copper", 0.784313725F, 0.501960784F, 0.2F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1241:3: note: in expansion of macro ‘reg_named_color’
 1241 |   reg_named_color("zinc", 0.490196078F, 0.501960784F, 0.690196078F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1242:3: note: in expansion of macro ‘reg_named_color’
 1242 |   reg_named_color("gallium", 0.760784314F, 0.560784314F, 0.560784314F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1243:3: note: in expansion of macro ‘reg_named_color’
 1243 |   reg_named_color("germanium", 0.4F, 0.560784314F, 0.560784314F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1244:3: note: in expansion of macro ‘reg_named_color’
 1244 |   reg_named_color("arsenic", 0.741176471F, 0.501960784F, 0.890196078F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1245:3: note: in expansion of macro ‘reg_named_color’
 1245 |   reg_named_color("selenium", 1.F, 0.631372549F, 0.F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1246:3: note: in expansion of macro ‘reg_named_color’
 1246 |   reg_named_color("bromine", 0.650980392F, 0.160784314F, 0.160784314F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1247:3: note: in expansion of macro ‘reg_named_color’
 1247 |   reg_named_color("krypton", 0.360784314F, 0.721568627F, 0.819607843F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1248:3: note: in expansion of macro ‘reg_named_color’
 1248 |   reg_named_color("rubidium", 0.439215686F, 0.180392157F, 0.690196078F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1249:3: note: in expansion of macro ‘reg_named_color’
 1249 |   reg_named_color("strontium", 0.F, 1.F, 0.F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1250:3: note: in expansion of macro ‘reg_named_color’
 1250 |   reg_named_color("yttrium", 0.580392157F, 1.F, 1.F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1251:3: note: in expansion of macro ‘reg_named_color’
 1251 |   reg_named_color("zirconium", 0.580392157F, 0.878431373F, 0.878431373F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1252:3: note: in expansion of macro ‘reg_named_color’
 1252 |   reg_named_color("niobium", 0.450980392F, 0.760784314F, 0.788235294F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1253:3: note: in expansion of macro ‘reg_named_color’
 1253 |   reg_named_color("molybdenum", 0.329411765F, 0.709803922F, 0.709803922F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1254:3: note: in expansion of macro ‘reg_named_color’
 1254 |   reg_named_color("technetium", 0.231372549F, 0.619607843F, 0.619607843F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1255:3: note: in expansion of macro ‘reg_named_color’
 1255 |   reg_named_color("ruthenium", 0.141176471F, 0.560784314F, 0.560784314F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1256:3: note: in expansion of macro ‘reg_named_color’
 1256 |   reg_named_color("rhodium", 0.039215686F, 0.490196078F, 0.549019608F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1257:3: note: in expansion of macro ‘reg_named_color’
 1257 |   reg_named_color("palladium", 0.F, 0.411764706F, 0.521568627F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1258:3: note: in expansion of macro ‘reg_named_color’
 1258 |   reg_named_color("silver", 0.752941176F, 0.752941176F, 0.752941176F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1259:3: note: in expansion of macro ‘reg_named_color’
 1259 |   reg_named_color("cadmium", 1.F, 0.850980392F, 0.560784314F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1260:3: note: in expansion of macro ‘reg_named_color’
 1260 |   reg_named_color("indium", 0.650980392F, 0.458823529F, 0.450980392F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1261:3: note: in expansion of macro ‘reg_named_color’
 1261 |   reg_named_color("tin", 0.4F, 0.501960784F, 0.501960784F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1262:3: note: in expansion of macro ‘reg_named_color’
 1262 |   reg_named_color("antimony", 0.619607843F, 0.388235294F, 0.709803922F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1263:3: note: in expansion of macro ‘reg_named_color’
 1263 |   reg_named_color("tellurium", 0.831372549F, 0.478431373F, 0.F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1264:3: note: in expansion of macro ‘reg_named_color’
 1264 |   reg_named_color("iodine", 0.580392157F, 0.F, 0.580392157F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1265:3: note: in expansion of macro ‘reg_named_color’
 1265 |   reg_named_color("xenon", 0.258823529F, 0.619607843F, 0.690196078F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1266:3: note: in expansion of macro ‘reg_named_color’
 1266 |   reg_named_color("cesium", 0.341176471F, 0.090196078F, 0.560784314F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1267:3: note: in expansion of macro ‘reg_named_color’
 1267 |   reg_named_color("barium", 0.F, 0.788235294F, 0.F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1268:3: note: in expansion of macro ‘reg_named_color’
 1268 |   reg_named_color("lanthanum", 0.439215686F, 0.831372549F, 1.F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1269:3: note: in expansion of macro ‘reg_named_color’
 1269 |   reg_named_color("cerium", 1.F, 1.F, 0.780392157F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1270:3: note: in expansion of macro ‘reg_named_color’
 1270 |   reg_named_color("praseodymium", 0.850980392F, 1.F, 0.780392157F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1271:3: note: in expansion of macro ‘reg_named_color’
 1271 |   reg_named_color("neodymium", 0.780392157F, 1.F, 0.780392157F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1272:3: note: in expansion of macro ‘reg_named_color’
 1272 |   reg_named_color("promethium", 0.639215686F, 1.F, 0.780392157F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1273:3: note: in expansion of macro ‘reg_named_color’
 1273 |   reg_named_color("samarium", 0.560784314F, 1.F, 0.780392157F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1274:3: note: in expansion of macro ‘reg_named_color’
 1274 |   reg_named_color("europium", 0.380392157F, 1.F, 0.780392157F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1275:3: note: in expansion of macro ‘reg_named_color’
 1275 |   reg_named_color("gadolinium", 0.270588235F, 1.F, 0.780392157F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1276:3: note: in expansion of macro ‘reg_named_color’
 1276 |   reg_named_color("terbium", 0.188235294F, 1.F, 0.780392157F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1277:3: note: in expansion of macro ‘reg_named_color’
 1277 |   reg_named_color("dysprosium", 0.121568627F, 1.F, 0.780392157F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1278:3: note: in expansion of macro ‘reg_named_color’
 1278 |   reg_named_color("holmium", 0.F, 1.F, 0.611764706F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1279:3: note: in expansion of macro ‘reg_named_color’
 1279 |   reg_named_color("erbium", 0.F, 0.901960784F, 0.458823529F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1280:3: note: in expansion of macro ‘reg_named_color’
 1280 |   reg_named_color("thulium", 0.F, 0.831372549F, 0.321568627F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1281:3: note: in expansion of macro ‘reg_named_color’
 1281 |   reg_named_color("ytterbium", 0.F, 0.749019608F, 0.219607843F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1282:3: note: in expansion of macro ‘reg_named_color’
 1282 |   reg_named_color("lutetium", 0.F, 0.670588235F, 0.141176471F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1283:3: note: in expansion of macro ‘reg_named_color’
 1283 |   reg_named_color("hafnium", 0.301960784F, 0.760784314F, 1.F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1284:3: note: in expansion of macro ‘reg_named_color’
 1284 |   reg_named_color("tantalum", 0.301960784F, 0.650980392F, 1.F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1285:3: note: in expansion of macro ‘reg_named_color’
 1285 |   reg_named_color("tungsten", 0.129411765F, 0.580392157F, 0.839215686F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1286:3: note: in expansion of macro ‘reg_named_color’
 1286 |   reg_named_color("rhenium", 0.149019608F, 0.490196078F, 0.670588235F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1287:3: note: in expansion of macro ‘reg_named_color’
 1287 |   reg_named_color("osmium", 0.149019608F, 0.4F, 0.588235294F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1288:3: note: in expansion of macro ‘reg_named_color’
 1288 |   reg_named_color("iridium", 0.090196078F, 0.329411765F, 0.529411765F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1289:3: note: in expansion of macro ‘reg_named_color’
 1289 |   reg_named_color("platinum", 0.815686275F, 0.815686275F, 0.878431373F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1290:3: note: in expansion of macro ‘reg_named_color’
 1290 |   reg_named_color("gold", 1.F, 0.819607843F, 0.137254902F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1291:3: note: in expansion of macro ‘reg_named_color’
 1291 |   reg_named_color("mercury", 0.721568627F, 0.721568627F, 0.815686275F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1292:3: note: in expansion of macro ‘reg_named_color’
 1292 |   reg_named_color("thallium", 0.650980392F, 0.329411765F, 0.301960784F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1293:3: note: in expansion of macro ‘reg_named_color’
 1293 |   reg_named_color("lead", 0.341176471F, 0.349019608F, 0.380392157F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1294:3: note: in expansion of macro ‘reg_named_color’
 1294 |   reg_named_color("bismuth", 0.619607843F, 0.309803922F, 0.709803922F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1295:3: note: in expansion of macro ‘reg_named_color’
 1295 |   reg_named_color("polonium", 0.670588235F, 0.360784314F, 0.F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1296:3: note: in expansion of macro ‘reg_named_color’
 1296 |   reg_named_color("astatine", 0.458823529F, 0.309803922F, 0.270588235F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1297:3: note: in expansion of macro ‘reg_named_color’
 1297 |   reg_named_color("radon", 0.258823529F, 0.509803922F, 0.588235294F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1298:3: note: in expansion of macro ‘reg_named_color’
 1298 |   reg_named_color("francium", 0.258823529F, 0.F, 0.4F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1299:3: note: in expansion of macro ‘reg_named_color’
 1299 |   reg_named_color("radium", 0.F, 0.490196078F, 0.F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1300:3: note: in expansion of macro ‘reg_named_color’
 1300 |   reg_named_color("actinium", 0.439215686F, 0.670588235F, 0.980392157F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1301:3: note: in expansion of macro ‘reg_named_color’
 1301 |   reg_named_color("thorium", 0.F, 0.729411765F, 1.F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1302:3: note: in expansion of macro ‘reg_named_color’
 1302 |   reg_named_color("protactinium", 0.F, 0.631372549F, 1.F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1303:3: note: in expansion of macro ‘reg_named_color’
 1303 |   reg_named_color("uranium", 0.F, 0.560784314F, 1.F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1304:3: note: in expansion of macro ‘reg_named_color’
 1304 |   reg_named_color("neptunium", 0.F, 0.501960784F, 1.F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1305:3: note: in expansion of macro ‘reg_named_color’
 1305 |   reg_named_color("plutonium", 0.F, 0.419607843F, 1.F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1306:3: note: in expansion of macro ‘reg_named_color’
 1306 |   reg_named_color("americium", 0.329411765F, 0.360784314F, 0.949019608F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1307:3: note: in expansion of macro ‘reg_named_color’
 1307 |   reg_named_color("curium", 0.470588235F, 0.360784314F, 0.890196078F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1308:3: note: in expansion of macro ‘reg_named_color’
 1308 |   reg_named_color("berkelium", 0.541176471F, 0.309803922F, 0.890196078F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1309:3: note: in expansion of macro ‘reg_named_color’
 1309 |   reg_named_color("californium", 0.631372549F, 0.211764706F, 0.831372549F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1310:3: note: in expansion of macro ‘reg_named_color’
 1310 |   reg_named_color("einsteinium", 0.701960784F, 0.121568627F, 0.831372549F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1311:3: note: in expansion of macro ‘reg_named_color’
 1311 |   reg_named_color("fermium", 0.701960784F, 0.121568627F, 0.729411765F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1312:3: note: in expansion of macro ‘reg_named_color’
 1312 |   reg_named_color("mendelevium", 0.701960784F, 0.050980392F, 0.650980392F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1313:3: note: in expansion of macro ‘reg_named_color’
 1313 |   reg_named_color("nobelium", 0.741176471F, 0.050980392F, 0.529411765F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1314:3: note: in expansion of macro ‘reg_named_color’
 1314 |   reg_named_color("lawrencium", 0.780392157F, 0.F, 0.4F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1315:3: note: in expansion of macro ‘reg_named_color’
 1315 |   reg_named_color("rutherfordium", 0.8F, 0.F, 0.349019608F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1316:3: note: in expansion of macro ‘reg_named_color’
 1316 |   reg_named_color("dubnium", 0.819607843F, 0.F, 0.309803922F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1317:3: note: in expansion of macro ‘reg_named_color’
 1317 |   reg_named_color("seaborgium", 0.850980392F, 0.F, 0.270588235F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1318:3: note: in expansion of macro ‘reg_named_color’
 1318 |   reg_named_color("bohrium", 0.878431373F, 0.F, 0.219607843F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1319:3: note: in expansion of macro ‘reg_named_color’
 1319 |   reg_named_color("hassium", 0.901960784F, 0.F, 0.180392157F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1320:3: note: in expansion of macro ‘reg_named_color’
 1320 |   reg_named_color("meitnerium", 0.921568627F, 0.F, 0.149019608F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1321:3: note: in expansion of macro ‘reg_named_color’
 1321 |   reg_named_color("deuterium", 0.9F, 0.9F, 0.9F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1322:3: note: in expansion of macro ‘reg_named_color’
 1322 |   reg_named_color("lonepair", 0.5F, 0.5F, 0.5F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1323:3: note: in expansion of macro ‘reg_named_color’
 1323 |   reg_named_color("pseudoatom", 0.9F, 0.9F, 0.9F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp: In function ‘void ColorUpdateFromLut(PyMOLGlobals*, int)’:
layer1/Color.cpp:1695:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1695 |   for(i = 0; i < I->Color.size(); i++) {
      |              ~~^~~~~~~~~~~~~~~~~
layer1/Color.cpp:1699:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1699 |     if(index < I->Color.size()) {
      |        ~~~~~~^~~~~~~~~~~~~~~~~
layer1/Color.cpp: In function ‘const float* ColorGet(PyMOLGlobals*, int)’:
layer1/Color.cpp:1808:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1808 |   if((index >= 0) && (index < I->Color.size())) {
      |                       ~~~~~~^~~~~~~~~~~~~~~~~
layer1/Color.cpp: In function ‘const float* ColorGetRaw(PyMOLGlobals*, int)’:
layer1/Color.cpp:1835:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1835 |   if((index >= 0) && (index < I->Color.size())) {
      |                       ~~~~~~^~~~~~~~~~~~~~~~~
layer1/Color.cpp: In function ‘int ColorGetEncoded(PyMOLGlobals*, int, float*)’:
layer1/Color.cpp:1853:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1853 |   if((index >= 0) && (index < I->Color.size())) {
      |                       ~~~~~~^~~~~~~~~~~~~~~~~
layer1/Color.cpp: In instantiation of ‘int findByCaseInsensitiveName(PyMOLGlobals*, const Sequence&, const char*) [with Sequence = std::vector<ExtRec>]’:
layer1/Color.cpp:304:35:   required from here
layer1/Color.cpp:245:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ExtRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  245 |   for (int a = 0; a < seq.size(); ++a) {
      |                   ~~^~~~~~~~~~~~
layer1/Color.cpp: In instantiation of ‘int findByCaseInsensitiveName(PyMOLGlobals*, const Sequence&, const char*) [with Sequence = std::vector<ColorRec>]’:
layer1/Color.cpp:626:38:   required from here
layer1/Color.cpp:245:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
layer1/Color.cpp: In instantiation of ‘int findByCaseInsensitivePrefix(PyMOLGlobals*, const Sequence&, const char*, int&) [with Sequence = std::vector<ColorRec>]’:
layer1/Color.cpp:741:42:   required from here
layer1/Color.cpp:275:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  275 |   for (int a = 0; a < seq.size(); ++a) {
      |                   ~~^~~~~~~~~~~~
layer1/Color.cpp: In instantiation of ‘int findByCaseInsensitivePrefix(PyMOLGlobals*, const Sequence&, const char*, int&) [with Sequence = std::vector<ExtRec>]’:
layer1/Color.cpp:743:54:   required from here
layer1/Color.cpp:275:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ExtRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
In function ‘SceneRenderPickingMultiPick(PyMOLGlobals*, SceneUnitContext*, Multipick*, unsigned int)’,
    inlined from ‘SceneRenderPicking(PyMOLGlobals*, int, int*, int, Picking*, int, int, Multipick*, SceneUnitContext*, unsigned int)’ at layer1/ScenePicking.cpp:314:32:
layer1/ScenePicking.cpp:249:7: warning: ‘previous.src.index’ may be used uninitialized [-Wmaybe-uninitialized]
  249 |       if (pik->src.index != previous.src.index ||
      |       ^~
layer1/ScenePicking.cpp: In function ‘SceneRenderPicking(PyMOLGlobals*, int, int*, int, Picking*, int, int, Multipick*, SceneUnitContext*, unsigned int)’:
layer1/ScenePicking.cpp:238:11: note: ‘previous.src.index’ was declared here
  238 |   Picking previous;
      |           ^~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/SceneRay.cpp -o build/temp.linux-x86_64-cpython-311/layer1/SceneRay.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/SceneRender.cpp -o build/temp.linux-x86_64-cpython-311/layer1/SceneRender.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/ScrollBar.cpp -o build/temp.linux-x86_64-cpython-311/layer1/ScrollBar.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/Seq.cpp -o build/temp.linux-x86_64-cpython-311/layer1/Seq.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/Control.cpp -o build/temp.linux-x86_64-cpython-311/layer1/Control.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer1/Seq.cpp: In function ‘int SeqFindRowCol(PyMOLGlobals*, int, int, int*, int*, int)’:
layer1/Seq.cpp:61:41: warning: comparison of integer expressions of different signedness: ‘int’ and ‘ov_size’ {aka ‘long unsigned int’} [-Wsign-compare]
   61 |         if((char_num >= 0) && (char_num < row->ext_len) && (row->char2col)) {
      |                                ~~~~~~~~~^~~~~~~~~~~~~~
layer1/Seq.cpp: In member function ‘virtual void CSeq::reshape(int, int)’:
layer1/Seq.cpp:114:28: warning: comparison of integer expressions of different signedness: ‘ov_size’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  114 |       if(I->Row[a].ext_len > I->Size)
layer1/Seq.cpp: In member function ‘virtual void CSeq::draw(CGO*)’:
layer1/Seq.cpp:392:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘ov_size’ {aka ‘long unsigned int’} [-Wsign-compare]
  392 |         if(max_len < row->ext_len)
      |            ~~~~~~~~^~~~~~~~~~~~~~
In file included from layer0/vla.h:7,
                 from layer1/Symmetry.h:26,
                 from layer1/PyMOLObject.h:27,
                 from layer1/Seq.h:21,
                 from layer1/Seq.cpp:22:
layer1/Seq.cpp: In function ‘void SeqFree(PyMOLGlobals*)’:
layer0/MemoryDebug.h:86:32: warning: deleting object of polymorphic class type ‘CSeq’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
   86 | #define DeleteP(ptr) {if(ptr) {delete ptr;ptr=NULL;}}
layer1/Seq.cpp:731:3: note: in expansion of macro ‘DeleteP’
  731 |   DeleteP(G->Seq);
      |   ^~~~~~~
layer1/Seq.cpp: At global scope:
layer1/Seq.cpp:717:13: warning: ‘void SeqPurgeRowVLA(PyMOLGlobals*)’ defined but not used [-Wunused-function]
  717 | static void SeqPurgeRowVLA(PyMOLGlobals * G)
      |             ^~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/Setting.cpp -o build/temp.linux-x86_64-cpython-311/layer1/Setting.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In file included from layer0/vla.h:7,
                 from layer1/Symmetry.h:26,
                 from layer1/PyMOLObject.h:27,
                 from layer1/Scene.h:22,
                 from layer1/Control.cpp:25:
layer1/Control.cpp: In function ‘void ControlFree(PyMOLGlobals*)’:
layer0/MemoryDebug.h:86:32: warning: deleting object of polymorphic class type ‘CControl’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
   86 | #define DeleteP(ptr) {if(ptr) {delete ptr;ptr=NULL;}}
layer1/Control.cpp:410:3: note: in expansion of macro ‘DeleteP’
  410 |   DeleteP(G->Control);
      |   ^~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/Extrude.cpp -o build/temp.linux-x86_64-cpython-311/layer1/Extrude.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer1/Setting.cpp: In function ‘void SettingGenerateSideEffects(PyMOLGlobals*, int, const char*, int, int)’:
layer1/Setting.cpp:2070:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2070 |     if (SettingGetGlobal_b(G, cSetting_precomputed_lighting))
      |     ^~
layer1/Setting.cpp:2072:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2072 |       SceneInvalidate(G);
      |       ^~~~~~~~~~~~~~~
layer1/Extrude.cpp: In function ‘ExtrudeCGOSurfaceTube(CExtrude const*, CGO*, cCylCap, float const*, bool, int)’:
layer1/Extrude.cpp:948:46: warning: ‘stop’ may be used uninitialized [-Wmaybe-uninitialized]
  948 |             if(color_override && (b > start) && (b < stop))
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
layer1/Extrude.cpp:875:14: note: ‘stop’ was declared here
  875 |   int start, stop;
      |              ^~~~
layer1/Extrude.cpp:948:37: warning: ‘start’ may be used uninitialized [-Wmaybe-uninitialized]
  948 |             if(color_override && (b > start) && (b < stop))
      |                                  ~~~^~~~~~~~
layer1/Extrude.cpp:875:7: note: ‘start’ was declared here
  875 |   int start, stop;
      |       ^~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/Font.cpp -o build/temp.linux-x86_64-cpython-311/layer1/Font.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/FontGLUT.cpp -o build/temp.linux-x86_64-cpython-311/layer1/FontGLUT.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/FontGLUT8x13.cpp -o build/temp.linux-x86_64-cpython-311/layer1/FontGLUT8x13.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/FontGLUT9x15.cpp -o build/temp.linux-x86_64-cpython-311/layer1/FontGLUT9x15.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/Wizard.cpp -o build/temp.linux-x86_64-cpython-311/layer1/Wizard.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer1/Wizard.cpp: In member function ‘virtual int CWizard::release(int, int, int, int)’:
layer1/Wizard.cpp:571:18: warning: unused variable ‘wiz’ [-Wunused-variable]
  571 |         if (auto wiz = WizardGet(G)) {
      |                  ^~~
layer1/Wizard.cpp: In member function ‘virtual void CWizard::draw(CGO*)’:
layer1/Wizard.cpp:727:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  727 |     else
      |     ^~~~
layer1/Wizard.cpp:729:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  729 |       drawTopEdge();
      |       ^~~~~~~~~~~
In file included from layer1/Wizard.cpp:27:
layer1/Wizard.cpp: In function ‘void WizardFree(PyMOLGlobals*)’:
layer0/MemoryDebug.h:86:32: warning: deleting object of polymorphic class type ‘CWizard’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
   86 | #define DeleteP(ptr) {if(ptr) {delete ptr;ptr=NULL;}}
layer1/Wizard.cpp:845:3: note: in expansion of macro ‘DeleteP’
  845 |   DeleteP(G->Wizard);
      |   ^~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/AssemblyHelpers.cpp -o build/temp.linux-x86_64-cpython-311/layer2/AssemblyHelpers.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/AtomInfo.cpp -o build/temp.linux-x86_64-cpython-311/layer2/AtomInfo.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer2/AtomInfo.cpp: In function ‘bool AtomResiFromResv(char*, size_t, int, char)’:
layer2/AtomInfo.cpp:817:56: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  817 |     return snprintf(resi, size, "%d%c", resv, inscode) < size;
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
layer2/AtomInfo.cpp:818:43: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  818 |   return snprintf(resi, size, "%d", resv) < size;
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/Shaker.cpp -o build/temp.linux-x86_64-cpython-311/layer1/Shaker.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/AtomInfoHistory.cpp -o build/temp.linux-x86_64-cpython-311/layer2/AtomInfoHistory.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/SymOp.cpp -o build/temp.linux-x86_64-cpython-311/layer1/SymOp.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer1/SymOp.cpp: In member function ‘pymol::SymOp::to_string[abi:cxx11]() const’:
layer1/SymOp.cpp:37:32: warning: ‘%d’ directive output may be truncated writing between 1 and 4 bytes into a region of size between 0 and 5 [-Wformat-truncation=]
   37 |   std::snprintf(code, 8, "%u_%d%d%d", index + 1, x + 5, y + 5, z + 5);
      |                                ^~
layer1/SymOp.cpp:37:26: note: directive argument in the range [-123, 132]
   37 |   std::snprintf(code, 8, "%u_%d%d%d", index + 1, x + 5, y + 5, z + 5);
      |                          ^~~~~~~~~~~
layer1/SymOp.cpp:37:26: note: directive argument in the range [-123, 132]
In file included from /usr/include/stdio.h:906,
                 from /usr/include/c++/12/cstdio:42,
                 from /usr/include/c++/12/ext/string_conversions.h:43,
                 from /usr/include/c++/12/bits/basic_string.h:3960,
                 from /usr/include/c++/12/string:53,
                 from layer1/SymOp.h:9,
                 from layer1/SymOp.cpp:7:
In function ‘snprintf’,
    inlined from ‘pymol::SymOp::to_string[abi:cxx11]() const’ at layer1/SymOp.cpp:37:16:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 6 and 17 bytes into a destination of size 8
   54 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   55 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   56 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/SymOpPConv.cpp -o build/temp.linux-x86_64-cpython-311/layer1/SymOpPConv.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/SymOpTools.cpp -o build/temp.linux-x86_64-cpython-311/layer1/SymOpTools.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/BondTypeHistory.cpp -o build/temp.linux-x86_64-cpython-311/layer2/BondTypeHistory.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/CifFile.cpp -o build/temp.linux-x86_64-cpython-311/layer2/CifFile.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/Symmetry.cpp -o build/temp.linux-x86_64-cpython-311/layer1/Symmetry.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/Text.cpp -o build/temp.linux-x86_64-cpython-311/layer1/Text.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/CifMoleculeReader.cpp -o build/temp.linux-x86_64-cpython-311/layer2/CifMoleculeReader.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer2/CifMoleculeReader.cpp: In member function ‘void seqvec_t::set(int, const char*)’:
layer2/CifMoleculeReader.cpp:108:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  108 |     if (i > size())
      |         ~~^~~~~~~~
layer2/CifMoleculeReader.cpp: In member function ‘const char* seqvec_t::get(int) const’:
layer2/CifMoleculeReader.cpp:114:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  114 |     if (i < 1 || i > size())
      |                  ~~^~~~~~~~
layer2/CifMoleculeReader.cpp: In function ‘CoordSet** read_pdbx_struct_assembly(PyMOLGlobals*, const pymol::cif_data*, const AtomInfoType*, const CoordSet*, const char*)’:
layer2/CifMoleculeReader.cpp:827:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  827 |       while (j < c_src_len * c_it->size()) {
      |              ~~^~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer2/CifMoleculeReader.cpp:31:
layer2/CifBondDict.h: In member function ‘bond_dict_t::get(PyMOLGlobals*, char const*, bool)’:
layer2/CifBondDict.h:93:12: warning: ‘strncpy’ specified bound 8 equals destination size [-Wstringop-truncation]
   93 |     strncpy(s, s_, sizeof(s));
      |            ^
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/CoordSet.cpp -o build/temp.linux-x86_64-cpython-311/layer2/CoordSet.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In file included from /usr/include/c++/12/cassert:44,
                 from layer0/Field.h:24,
                 from layer3/Executive.h:27,
                 from layer2/CoordSet.cpp:54:
layer2/CoordSet.cpp: In member function ‘int CoordSet::atmToIdx(int) const’:
layer2/CoordSet.cpp:134:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  134 |   assert(atm < AtmToIdx.size());
      |          ~~~~^~~~~~~~~~~~~~~~~
layer2/CoordSet.cpp: In member function ‘void CoordSet::updateNonDiscreteAtmToIdx(unsigned int)’:
layer2/CoordSet.cpp:140:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  140 |   assert(!Obj || natom == Obj->NAtom);
      |                  ~~~~~~^~~~~~~~~~~~~
layer2/CoordSet.cpp:145:16: warning: comparison of integer expressions of different signedness: ‘const int’ and ‘unsigned int’ [-Wsign-compare]
  145 |     assert(atm < natom);
      |            ~~~~^~~~~~~
layer2/CoordSet.cpp: In member function ‘int CoordSet::extendIndices(int)’:
layer2/CoordSet.cpp:1572:21: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare]
 1572 |     assert(NAtIndex <= nAtom);
      |            ~~~~~~~~~^~~~~~~~
layer2/CoordSet.cpp:1573:18: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare]
 1573 |     if (NAtIndex < nAtom) {
      |         ~~~~~~~~~^~~~~~~
layer2/CoordSet.cpp: In function ‘void CoordSetAtomToPDBStrVLA(PyMOLGlobals*, char**, int*, const AtomInfoType*, const float*, int, const PDBInfoRec*, const double*)’:
layer2/CoordSet.cpp:1014:14: warning: ‘char* strncpy(char*, const char*, size_t)’ output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation]
 1014 |       strncpy(anisoline, "ANISOU", 6);
      |       ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/DistSet.cpp -o build/temp.linux-x86_64-cpython-311/layer2/DistSet.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer2/DistSet.cpp: In function ‘int DistSetGetLabelVertex(DistSet*, int, float*)’:
layer2/DistSet.cpp:43:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::array<float, 3> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   43 |   if (at >= 0 && at < I->LabCoord.size()) {
      |                  ~~~^~~~~~~~~~~~~~~~~~~~
layer2/DistSet.cpp: In member function ‘pymol::Result<std::array<float, 3> > DistSet::getLabelOffset(int) const’:
layer2/DistSet.cpp:59:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<LabPosType>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   59 |   if (atm < 0 || atm >= this->LabPos.size()) {
      |                  ~~~~^~~~~~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/TypeFace.cpp -o build/temp.linux-x86_64-cpython-311/layer1/TypeFace.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/View.cpp -o build/temp.linux-x86_64-cpython-311/layer1/View.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/GadgetSet.cpp -o build/temp.linux-x86_64-cpython-311/layer2/GadgetSet.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/ObjectVolume.cpp -o build/temp.linux-x86_64-cpython-311/layer2/ObjectVolume.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/HydrogenAdder.cpp -o build/temp.linux-x86_64-cpython-311/layer2/HydrogenAdder.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer2/ObjectVolume.cpp: In function ‘PyObject* ObjectVolumeAllStatesAsPyList(ObjectVolume*)’:
layer2/ObjectVolume.cpp:127:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectVolumeState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  127 |   for(int a = 0; a < I->State.size(); a++) {
      |                  ~~^~~~~~~~~~~~~~~~~
layer2/ObjectVolume.cpp: In function ‘int ObjectVolumeAllStatesFromPyList(ObjectVolume*, PyObject*)’:
layer2/ObjectVolume.cpp:248:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectVolumeState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  248 |     for(int a = 0; a < I->State.size(); a++) {
      |                    ~~^~~~~~~~~~~~~~~~~
layer2/ObjectVolume.cpp: In function ‘int ObjectVolumeInvalidateMapName(ObjectVolume*, const char*, const char*)’:
layer2/ObjectVolume.cpp:313:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectVolumeState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  313 |   for(int a = 0; a < I->State.size(); a++) {
      |                  ~~^~~~~~~~~~~~~~~~~
layer2/ObjectVolume.cpp: In member function ‘virtual void ObjectVolume::invalidate(cRep_t, cRepInv_t, int)’:
layer2/ObjectVolume.cpp:341:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectVolumeState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  341 |     for(a = 0; a < I->State.size(); a++) {
      |                ~~^~~~~~~~~~~~~~~~~
layer2/ObjectVolume.cpp: In member function ‘virtual void ObjectVolume::update()’:
layer2/ObjectVolume.cpp:402:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectVolumeState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  402 |   for(int a = 0; a < I->State.size(); a++) {
      |                  ~~^~~~~~~~~~~~~~~~~
layer2/ObjectVolume.cpp:440:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<float>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  440 |         for (i = 0; i < vs->Ramp.size(); i += 5) {
      |                     ~~^~~~~~~~~~~~~~~~~
layer2/ObjectVolume.cpp: In member function ‘virtual void ObjectVolume::render(RenderInfo*)’:
layer2/ObjectVolume.cpp:759:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectVolumeState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  759 |   for(a = 0; a < I->State.size(); ++a) {
      |              ~~^~~~~~~~~~~~~~~~~
layer2/ObjectVolume.cpp: In function ‘ObjectVolume* ObjectVolumeFromXtalSym(PyMOLGlobals*, ObjectVolume*, ObjectMap*, CSymmetry*, int, int, float*, float*, float, int, float, float*, int)’:
layer2/ObjectVolume.cpp:1131:22: warning: comparison of integer expressions of different signedness: ‘std::vector<ObjectVolumeState>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
 1131 |   if(I->State.size() <= state) {
      |      ~~~~~~~~~~~~~~~~^~~~~~~~
layer2/ObjectVolume.cpp: In function ‘void ObjectVolumeRecomputeExtent(ObjectVolume*)’:
layer2/ObjectVolume.cpp:1232:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectVolumeState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1232 |   for(int a = 0; a < I->State.size(); a++) {
      |                  ~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/cassert:44,
                 from layer0/Field.h:24,
                 from layer0/Isosurf.h:24,
                 from layer2/ObjectMap.h:25,
                 from layer2/ObjectVolume.h:20,
                 from layer2/ObjectVolume.cpp:29:
layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = unsigned char; SizeTs = {int, int, int}]’:
layer0/Field.h:114:19:   required from ‘T& CField::get(SizeTs ...) [with T = unsigned char; SizeTs = {int, int, int}]’
layer2/ObjectVolume.cpp:534:44:   required from here
layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare]
  100 |     assert(sizeof...(pos) <= n_dim());
      |            ~~~~~~~~~~~~~~~^~~~~~~~~~
layer2/ObjectVolume.cpp: At global scope:
layer2/ObjectVolume.cpp:657:15: warning: ‘size_t createPreintegrationTexture(PyMOLGlobals*, const float*, int)’ defined but not used [-Wunused-function]
  657 | static size_t createPreintegrationTexture(PyMOLGlobals * G, const float *Table, const int count)
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~
layer2/HydrogenAdder.cpp: In function ‘int ObjectMoleculeAddSeleHydrogensRefactored(ObjectMolecule*, int, int)’:
layer2/HydrogenAdder.cpp:283:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘const int’ [-Wsign-compare]
  283 |   for (unsigned atm = 0; atm < n_atom_old; atm++) {
      |                          ~~~~^~~~~~~~~~~~
layer2/HydrogenAdder.cpp:301:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘const int’ [-Wsign-compare]
  301 |   for (unsigned atm = 0; atm < n_atom_old; ++atm) {
      |                          ~~~~^~~~~~~~~~~~
layer2/HydrogenAdder.cpp:349:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  349 |     for (unsigned idx = 0; idx < cs->NIndex; ++idx) {
      |                            ~~~~^~~~~~~~~~~~
layer2/ObjectVolume.cpp: In function ‘ObjectVolumeStateGetMapState(ObjectVolumeState*)’:
layer2/ObjectVolume.cpp:74:33: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 230 [-Wformat-truncation=]
   74 |       "ObjectVolume-Error: map '%s' has been deleted.\n", vs->MapName
      |                                 ^~
In file included from /usr/include/stdio.h:906,
                 from /usr/include/python3.11/Python.h:24,
                 from layer0/os_python.h:34,
                 from layer2/ObjectVolume.cpp:20:
In function ‘snprintf’,
    inlined from ‘ObjectVolumeStateGetMapState(ObjectVolumeState*)’ at layer2/ObjectVolume.cpp:73:5:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 46 and 301 bytes into a destination of size 255
   54 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   55 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   56 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/MmodTyping.cpp -o build/temp.linux-x86_64-cpython-311/layer2/MmodTyping.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/MmtfMoleculeReader.cpp -o build/temp.linux-x86_64-cpython-311/layer2/MmtfMoleculeReader.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/RepAngle.cpp -o build/temp.linux-x86_64-cpython-311/layer2/RepAngle.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer2/MmtfMoleculeReader.cpp: In function ‘ObjectMolecule* ObjectMoleculeReadMmtfStr(PyMOLGlobals*, ObjectMolecule*, const char*, int, int, int, int, int, int)’:
layer2/MmtfMoleculeReader.cpp:171:18: warning: the address of ‘MMTF_container::unitCell’ will never be NULL [-Waddress]
  171 |   if (container->unitCell &&
      |       ~~~~~~~~~~~^~~~~~~~
In file included from layer2/MmtfMoleculeReader.cpp:14:
contrib/mmtf-c/mmtf_parser.h:104:11: note: ‘MMTF_container::unitCell’ declared here
  104 |     float unitCell[6];
      |           ^~~~~~~~
layer2/MmtfMoleculeReader.cpp:223:47: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
  223 |         for (int l = 0, offset = atomIndex; l < group->bondAtomListCount / 2; ++l) {
      |                                             ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/cassert:44,
                 from layer0/vla.h:10,
                 from layer1/Symmetry.h:26,
                 from layer1/PyMOLObject.h:27,
                 from layer2/ObjectMolecule.h:24,
                 from layer2/MmtfMoleculeReader.cpp:9:
layer2/MmtfMoleculeReader.cpp:276:34: warning: comparison of integer expressions of different signedness: ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  276 |     assert(cset->IdxToAtm.size() == cset->getNIndex());
      |            ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
layer2/MmtfMoleculeReader.cpp:287:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  287 |   for (int l = 0; l < container->bondAtomListCount / 2; ++l) {
      |                   ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/Mol2Typing.cpp -o build/temp.linux-x86_64-cpython-311/layer2/Mol2Typing.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/MolV3000.cpp -o build/temp.linux-x86_64-cpython-311/layer2/MolV3000.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/RepCartoon.cpp -o build/temp.linux-x86_64-cpython-311/layer2/RepCartoon.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/ObjectAlignment.cpp -o build/temp.linux-x86_64-cpython-311/layer2/ObjectAlignment.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer2/RepCartoon.cpp: In function ‘Rep* RepCartoonNew(CoordSet*, int)’:
layer2/RepCartoon.cpp:3731:11: warning: ‘void* memset(void*, int, size_t)’ clearing an object of non-trivial type ‘class CCInOut’; use assignment or value-initialization instead [-Wclass-memaccess]
 3731 |     memset(car,      0, sizeof(*car)      * nAtIndex);
      |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer2/RepCartoon.cpp:44:7: note: ‘class CCInOut’ declared here
   44 | class CCInOut {
      |       ^~~~~~~
In file included from layer2/CoordSet.h:24,
                 from layer2/RepCartoon.h:21,
                 from layer2/RepCartoon.cpp:27:
In function ‘SettingUniqueGetTypedValuePtr(PyMOLGlobals*, int, int, int, bool*)’,
    inlined from ‘SettingUniqueGetIfDefined<bool>(PyMOLGlobals*, int, int, bool*)bool’ at layer1/Setting.h:447:39,
    inlined from ‘AtomSettingGetIfDefined<bool, AtomInfoType const>(PyMOLGlobals*, AtomInfoType const*, int, bool*)bool’ at layer2/AtomInfo.h:496:33,
    inlined from ‘AtomSettingGetWD<bool, AtomInfoType const>(PyMOLGlobals*, AtomInfoType const*, int, bool)bool’ at layer2/AtomInfo.h:506:36,
    inlined from ‘ring_connector_visible(PyMOLGlobals*, AtomInfoType const*, AtomInfoType const*, bool)’ at layer2/RepCartoon.cpp:337:23:
layer1/Setting.h:436:11: warning: ‘out’ may be used uninitialized [-Wmaybe-uninitialized]
  436 |   int i = *out;
      |           ^~~~
In file included from layer2/ObjectMolecule.h:25,
                 from layer2/CoordSet.h:25:
layer2/AtomInfo.h: In function ‘ring_connector_visible(PyMOLGlobals*, AtomInfoType const*, AtomInfoType const*, bool)’:
layer2/AtomInfo.h:505:5: note: ‘out’ was declared here
  505 |   V out;
      |     ^~~
In function ‘SettingUniqueGetTypedValuePtr(PyMOLGlobals*, int, int, int, bool*)’,
    inlined from ‘SettingUniqueGetIfDefined<bool>(PyMOLGlobals*, int, int, bool*)bool’ at layer1/Setting.h:447:39,
    inlined from ‘AtomSettingGetIfDefined<bool, AtomInfoType const>(PyMOLGlobals*, AtomInfoType const*, int, bool*)bool’ at layer2/AtomInfo.h:496:33,
    inlined from ‘AtomSettingGetWD<bool, AtomInfoType const>(PyMOLGlobals*, AtomInfoType const*, int, bool)bool’ at layer2/AtomInfo.h:506:36,
    inlined from ‘ring_connector_visible(PyMOLGlobals*, AtomInfoType const*, AtomInfoType const*, bool)’ at layer2/RepCartoon.cpp:338:23:
layer1/Setting.h:436:11: warning: ‘out’ may be used uninitialized [-Wmaybe-uninitialized]
  436 |   int i = *out;
      |           ^~~~
layer2/AtomInfo.h: In function ‘ring_connector_visible(PyMOLGlobals*, AtomInfoType const*, AtomInfoType const*, bool)’:
layer2/AtomInfo.h:505:5: note: ‘out’ was declared here
  505 |   V out;
      |     ^~~
layer2/RepCartoon.cpp: In function ‘do_ring(PyMOLGlobals*, nuc_acid_data*, int, int*, ObjectMolecule*, CoordSet*, float, CGO*, int, float, int, int, int, float, float, int*, float*, float)’:
layer2/RepCartoon.cpp:1007:65: warning: ‘i’ may be used uninitialized [-Wmaybe-uninitialized]
 1007 |                     float ladder_alpha = 1.0f - AtomSettingGetWD(G, ai_i[i], cSetting_cartoon_transparency, 1.0f - alpha);
      |                                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer2/RepCartoon.cpp:461:11: note: ‘i’ was declared here
  461 |       int i;
      |           ^
layer2/ObjectAlignment.cpp: In member function ‘ObjectAlignment::update()’:
layer2/ObjectAlignment.cpp:926:39: warning: ‘MEM[(float *)&gvert + 8B]’ may be used uninitialized [-Wmaybe-uninitialized]
  926 |               float mean[3], vert[3], gvert[3];
      |                                       ^~~~~
layer2/ObjectAlignment.cpp:926:39: warning: ‘MEM[(float *)&gvert + 4B]’ may be used uninitialized [-Wmaybe-uninitialized]
layer2/ObjectAlignment.cpp:926:39: warning: ‘MEM[(float *)&gvert]’ may be used uninitialized [-Wmaybe-uninitialized]
In file included from layer1/Symmetry.h:26,
                 from layer2/CoordSet.h:22:
In member function ‘pymol::vla<AtomInfoType>::operator+<int>(int)AtomInfoType*’,
    inlined from ‘GenerateRepCartoonProcessCylindricalHelices(PyMOLGlobals*, ObjectMolecule*, CoordSet*, CGO*, CExtrude*, int, int*, float*, float*, float*, CCInOut const*, int*, float*, int, int, float, float)’ at layer2/RepCartoon.cpp:1739:34,
    inlined from ‘GenerateRepCartoonCGO(CoordSet*, ObjectMolecule*, nuc_acid_data*, short, float*, int, float*, float*, float*, CCInOut const*, int*, int*, int*, float*, float)’ at layer2/RepCartoon.cpp:2553:53:
layer0/vla.h:118:60: warning: ‘atom_index2’ may be used uninitialized [-Wmaybe-uninitialized]
  118 |   template <typename S> T* operator+(S i) { return m_vla + i; }
      |                                                            ^
layer2/RepCartoon.cpp: In function ‘GenerateRepCartoonCGO(CoordSet*, ObjectMolecule*, nuc_acid_data*, short, float*, int, float*, float*, float*, CCInOut const*, int*, int*, int*, float*, float)’:
layer2/RepCartoon.cpp:1593:20: note: ‘atom_index2’ was declared here
 1593 |   int atom_index1, atom_index2, *s,
      |                    ^~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/ObjectCGO.cpp -o build/temp.linux-x86_64-cpython-311/layer2/ObjectCGO.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer2/RepCartoon.cpp: In function ‘RepCartoonNew(CoordSet*, int)’:
layer2/RepCartoon.cpp:3206:23: warning: ‘MEM[(float *)&t2]’ may be used uninitialized [-Wmaybe-uninitialized]
 3206 |   float t0[3], t1[3], t2[3];
      |                       ^~
layer2/RepCartoon.cpp:3206:23: warning: ‘MEM[(float *)&t2 + 4B]’ may be used uninitialized [-Wmaybe-uninitialized]
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/RepCylBond.cpp -o build/temp.linux-x86_64-cpython-311/layer2/RepCylBond.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer2/ObjectCGO.cpp: In function ‘PyObject* ObjectCGOAllStatesAsPyList(ObjectCGO*)’:
layer2/ObjectCGO.cpp:53:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectCGOState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   53 |   for(a = 0; a < I->State.size(); a++) {
      |              ~~^~~~~~~~~~~~~~~~~
layer2/ObjectCGO.cpp: In function ‘int ObjectCGOAllStatesFromPyList(ObjectCGO*, PyObject*, int)’:
layer2/ObjectCGO.cpp:104:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectCGOState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  104 |     for(a = 0; a < I->State.size(); a++) {
      |                ~~^~~~~~~~~~~~~~~~~
layer2/ObjectCGO.cpp: In member function ‘virtual void ObjectCGO::invalidate(cRep_t, cRepInv_t, int)’:
layer2/ObjectCGO.cpp:205:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectCGOState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  205 |     if((state >= 0) && (state < I->State.size())) {
      |                         ~~~~~~^~~~~~~~~~~~~~~~~
layer2/ObjectCGO.cpp: In member function ‘virtual void ObjectCGO::render(RenderInfo*)’:
layer2/ObjectCGO.cpp:488:9: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  488 |         if (!ray)
      |         ^~
layer2/ObjectCGO.cpp:490:11: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  490 |           ObjectCGORenderState(G, pass, ray, I, info, sobj, color, ramp, use_shader, cgo_lighting);
      |           ^~~~~~~~~~~~~~~~~~~~
In file included from layer2/ObjectCGO.cpp:24:
layer2/ObjectCGO.h: In copy constructor ‘ObjectCGOState::ObjectCGOState(const ObjectCGOState&)’:
layer2/ObjectCGO.h:28:17: warning: ‘ObjectCGOState::G’ will be initialized after [-Wreorder]
   28 |   PyMOLGlobals* G;
      |                 ^
layer2/ObjectCGO.h:27:25: warning:   ‘pymol::cache_ptr<CGO> ObjectCGOState::renderCGO’ [-Wreorder]
   27 |   pymol::cache_ptr<CGO> renderCGO;
      |                         ^~~~~~~~~
layer2/ObjectCGO.cpp:517:1: warning:   when initialized here [-Wreorder]
  517 | ObjectCGOState::ObjectCGOState(const ObjectCGOState& other)
      | ^~~~~~~~~~~~~~
layer2/ObjectCGO.h:29:58: warning: ‘ObjectCGOState::hasOpaque’ will be initialized after [-Wreorder]
   29 |   bool renderWithShaders, hasTransparency, cgo_lighting, hasOpaque;
      |                                                          ^~~~~~~~~
layer2/ObjectCGO.h:29:44: warning:   ‘bool ObjectCGOState::cgo_lighting’ [-Wreorder]
   29 |   bool renderWithShaders, hasTransparency, cgo_lighting, hasOpaque;
      |                                            ^~~~~~~~~~~~
layer2/ObjectCGO.cpp:517:1: warning:   when initialized here [-Wreorder]
  517 | ObjectCGOState::ObjectCGOState(const ObjectCGOState& other)
      | ^~~~~~~~~~~~~~
layer2/ObjectCGO.cpp: In function ‘ObjectCGO* ObjectCGOFromCGO(PyMOLGlobals*, ObjectCGO*, CGO*, int)’:
layer2/ObjectCGO.cpp:602:22: warning: comparison of integer expressions of different signedness: ‘std::vector<ObjectCGOState>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  602 |   if(I->State.size() <= state) {
      |      ~~~~~~~~~~~~~~~~^~~~~~~~
layer2/ObjectCGO.cpp: In function ‘ObjectCGO* ObjectCGODefine(PyMOLGlobals*, ObjectCGO*, PyObject*, int)’:
layer2/ObjectCGO.cpp:667:22: warning: comparison of integer expressions of different signedness: ‘std::vector<ObjectCGOState>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  667 |   if(I->State.size() <= state) {
      |      ~~~~~~~~~~~~~~~~^~~~~~~~
layer2/ObjectCGO.cpp: In function ‘ObjectCGO* ObjectCGOFromFloatArray(PyMOLGlobals*, ObjectCGO*, float*, int, int, int)’:
layer2/ObjectCGO.cpp:725:22: warning: comparison of integer expressions of different signedness: ‘std::vector<ObjectCGOState>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  725 |   if(I->State.size() <= state) {
      |      ~~~~~~~~~~~~~~~~^~~~~~~~
In function ‘ObjectCGOStateFromPyList(PyMOLGlobals*, ObjectCGOState*, _object*, int)’,
    inlined from ‘ObjectCGOAllStatesFromPyList(ObjectCGO*, _object*, int)’ at layer2/ObjectCGO.cpp:107:33,
    inlined from ‘ObjectCGONewFromPyList(PyMOLGlobals*, _object*, ObjectCGO**, int)’ at layer2/ObjectCGO.cpp:137:38:
layer2/ObjectCGO.cpp:74:14: warning: ‘ll’ may be used uninitialized [-Wmaybe-uninitialized]
   74 |   if(ok && ll==2) {
      |            ~~^~~
layer2/ObjectCGO.cpp: In function ‘ObjectCGONewFromPyList(PyMOLGlobals*, _object*, ObjectCGO**, int)’:
layer2/ObjectCGO.cpp:63:7: note: ‘ll’ was declared here
   63 |   int ll, pl = 0;
      |       ^~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/ObjectCallback.cpp -o build/temp.linux-x86_64-cpython-311/layer2/ObjectCallback.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/RepDihedral.cpp -o build/temp.linux-x86_64-cpython-311/layer2/RepDihedral.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/ObjectDist.cpp -o build/temp.linux-x86_64-cpython-311/layer2/ObjectDist.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer2/ObjectDist.cpp: In function ‘int ObjectDistMoveWithObject(ObjectDist*, ObjectMolecule*)’:
layer2/ObjectDist.cpp:111:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<pymol::copyable_ptr<DistSet> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  111 |   for (int i=0; i<I->DSet.size(); i++) {
      |                 ~^~~~~~~~~~~~~~~
layer2/ObjectDist.cpp: In function ‘void ObjectDistUpdateExtents(ObjectDist*)’:
layer2/ObjectDist.cpp:136:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<pymol::copyable_ptr<DistSet> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  136 |   for(int a = 0; a < I->DSet.size(); a++) {
      |                  ~~^~~~~~~~~~~~~~~~
layer2/ObjectDist.cpp: In function ‘PyObject* ObjectDistDSetAsPyList(ObjectDist*)’:
layer2/ObjectDist.cpp:148:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<pymol::copyable_ptr<DistSet> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  148 |   for(int a = 0; a < I->DSet.size(); a++) {
      |                  ~~^~~~~~~~~~~~~~~~
layer2/ObjectDist.cpp: In function ‘int ObjectDistDSetFromPyList(ObjectDist*, PyObject*)’:
layer2/ObjectDist.cpp:165:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<pymol::copyable_ptr<DistSet> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  165 |     for(int a = 0; a < I->DSet.size(); a++) {
      |                    ~~^~~~~~~~~~~~~~~~
layer2/ObjectDist.cpp: In member function ‘virtual void ObjectDist::update()’:
layer2/ObjectDist.cpp:241:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<pymol::copyable_ptr<DistSet> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  241 |   for(int a = 0; a < I->DSet.size(); a++)
      |                  ~~^~~~~~~~~~~~~~~~
layer2/ObjectDist.cpp: In function ‘void ObjectDistInvalidateRep(ObjectDist*, cRep_t)’:
layer2/ObjectDist.cpp:257:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<pymol::copyable_ptr<DistSet> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  257 |   for(a = 0; a < I->DSet.size(); a++)
      |              ~~^~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/RepDistDash.cpp -o build/temp.linux-x86_64-cpython-311/layer2/RepDistDash.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/ObjectGadget.cpp -o build/temp.linux-x86_64-cpython-311/layer2/ObjectGadget.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/RepDistLabel.cpp -o build/temp.linux-x86_64-cpython-311/layer2/RepDistLabel.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/ObjectGadgetRamp.cpp -o build/temp.linux-x86_64-cpython-311/layer2/ObjectGadgetRamp.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/RepDot.cpp -o build/temp.linux-x86_64-cpython-311/layer2/RepDot.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/ObjectGroup.cpp -o build/temp.linux-x86_64-cpython-311/layer2/ObjectGroup.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer2/RepDot.cpp: In function ‘RepDotDoNew(CoordSet*, cRepDot_t, int)’:
layer2/RepDot.cpp:436:17: warning: ‘vn’ may be used uninitialized [-Wmaybe-uninitialized]
  436 |         *(vn++) = sp->dot[b][2];
      |         ~~~~~~~~^~~~~~~~~~~~~~~
layer2/RepDot.cpp:263:14: note: ‘vn’ was declared here
  263 |   float *v, *vn;
      |              ^~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/RepEllipsoid.cpp -o build/temp.linux-x86_64-cpython-311/layer2/RepEllipsoid.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/ObjectMap.cpp -o build/temp.linux-x86_64-cpython-311/layer2/ObjectMap.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/RepLabel.cpp -o build/temp.linux-x86_64-cpython-311/layer2/RepLabel.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer2/ObjectMap.cpp: In function ‘int ObjectMapValidXtal(ObjectMap*, int)’:
layer2/ObjectMap.cpp:133:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  133 |   if((state >= 0) && (state < I->State.size())) {
      |                       ~~~~~~^~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp: In function ‘pymol::Result<> ObjectMapTrim(ObjectMap*, int, float*, float*, int)’:
layer2/ObjectMap.cpp:914:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  914 |   } else if((state >= 0) && (state < I->State.size()) && (I->State[state].Active)) {
      |                              ~~~~~~^~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp: In function ‘pymol::Result<> ObjectMapDouble(ObjectMap*, int)’:
layer2/ObjectMap.cpp:931:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  931 |   } else if((state >= 0) && (state < I->State.size()) && (I->State[state].Active)) {
      |                              ~~~~~~^~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp: In function ‘pymol::Result<> ObjectMapHalve(ObjectMap*, int, int)’:
layer2/ObjectMap.cpp:946:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  946 |   } else if((state >= 0) && (state < I->State.size()) && (I->State[state].Active)) {
      |                              ~~~~~~^~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp: In function ‘void ObjectMapRegeneratePoints(ObjectMap*)’:
layer2/ObjectMap.cpp:1189:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1189 |   for (i=0; i<om->State.size();i++){
      |             ~^~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp: In function ‘PyObject* ObjectMapAllStatesAsPyList(ObjectMap*)’:
layer2/ObjectMap.cpp:1279:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1279 |   for(a = 0; a < I->State.size(); a++) {
      |              ~~^~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp: In function ‘int ObjectMapAllStatesFromPyList(ObjectMap*, PyObject*)’:
layer2/ObjectMap.cpp:1437:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1437 |     for(a = 0; a < I->State.size(); a++) {
      |                ~~^~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp: In function ‘int ObjectMapNewCopy(PyMOLGlobals*, const ObjectMap*, ObjectMap**, int, int)’:
layer2/ObjectMap.cpp:1509:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1509 |       for(state = 0; state < src->State.size(); state++) {
      |                      ~~~~~~^~~~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp:1518:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1518 |       if(source_state < src->State.size()) {
      |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp: In function ‘ObjectMapState* ObjectMapStatePrime(ObjectMap*, int)’:
layer2/ObjectMap.cpp:1535:22: warning: comparison of integer expressions of different signedness: ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
 1535 |   if(I->State.size() <= state) {
      |      ~~~~~~~~~~~~~~~~^~~~~~~~
layer2/ObjectMap.cpp: In function ‘void ObjectMapUpdateExtents(ObjectMap*)’:
layer2/ObjectMap.cpp:1548:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1548 |   for(a = 0; a < I->State.size(); a++) {
      |              ~~^~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp: In member function ‘virtual void ObjectMap::invalidate(cRep_t, cRepInv_t, int)’:
layer2/ObjectMap.cpp:1674:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1674 |     for(a = 0; a < I->State.size(); a++) {
      |                ~~^~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp: In function ‘int ObjectMapCCP4StrToMap(ObjectMap*, char*, int, int, int, int)’:
layer2/ObjectMap.cpp:2297:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
 2297 |   if(bytes < 256 * sizeof(int)) {
      |      ~~~~~~^~~~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp:2307:22: warning: comparison of integer expressions of different signedness: ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
 2307 |   if(I->State.size() <= state) {
      |      ~~~~~~~~~~~~~~~~^~~~~~~~
layer2/ObjectMap.cpp: In function ‘int ObjectMapPHIStrToMap(ObjectMap*, char*, int, int, int)’:
layer2/ObjectMap.cpp:2942:22: warning: comparison of integer expressions of different signedness: ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
 2942 |   if(I->State.size() <= state) {
      |      ~~~~~~~~~~~~~~~~^~~~~~~~
layer2/ObjectMap.cpp: In function ‘int ObjectMapXPLORStrToMap(ObjectMap*, char*, int, int)’:
layer2/ObjectMap.cpp:3216:22: warning: comparison of integer expressions of different signedness: ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
 3216 |   if(I->State.size() <= state) {
      |      ~~~~~~~~~~~~~~~~^~~~~~~~
layer2/ObjectMap.cpp: In function ‘int ObjectMapFLDStrToMap(ObjectMap*, char*, int, int, int)’:
layer2/ObjectMap.cpp:3437:22: warning: comparison of integer expressions of different signedness: ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
 3437 |   if(I->State.size() <= state) {
      |      ~~~~~~~~~~~~~~~~^~~~~~~~
layer2/ObjectMap.cpp: In function ‘int ObjectMapBRIXStrToMap(ObjectMap*, char*, int, int, int)’:
layer2/ObjectMap.cpp:3766:22: warning: comparison of integer expressions of different signedness: ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
 3766 |   if(I->State.size() <= state) {
      |      ~~~~~~~~~~~~~~~~^~~~~~~~
layer2/ObjectMap.cpp: In function ‘int ObjectMapGRDStrToMap(ObjectMap*, char*, int, int, int)’:
layer2/ObjectMap.cpp:4172:22: warning: comparison of integer expressions of different signedness: ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
 4172 |   if(I->State.size() <= state) {
      |      ~~~~~~~~~~~~~~~~^~~~~~~~
layer2/ObjectMap.cpp: In function ‘ObjectMap* ObjectMapLoadCCP4(PyMOLGlobals*, ObjectMap*, const char*, int, int, int, int, int)’:
layer2/ObjectMap.cpp:4694:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 4694 |       if(state < I->State.size()) {
      |          ~~~~~~^~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp: In function ‘int ObjectMapACNTStrToMap(ObjectMap*, char*, int, int, int)’:
layer2/ObjectMap.cpp:5245:22: warning: comparison of integer expressions of different signedness: ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
 5245 |   if(I->State.size() <= state) {
      |      ~~~~~~~~~~~~~~~~^~~~~~~~
layer2/ObjectMap.cpp: In function ‘ObjectMap* ObjectMapLoadXPLOR(PyMOLGlobals*, ObjectMap*, const char*, int, int, int)’:
layer2/ObjectMap.cpp:5557:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 5557 |         if(state < I->State.size()) {
      |            ~~~~~~^~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp: In function ‘ObjectMap* ObjectMapLoadChemPyBrick(PyMOLGlobals*, ObjectMap*, PyObject*, int, int, int)’:
layer2/ObjectMap.cpp:5711:24: warning: comparison of integer expressions of different signedness: ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
 5711 |     if(I->State.size() <= state) {
      |        ~~~~~~~~~~~~~~~~^~~~~~~~
layer2/ObjectMap.cpp: In function ‘ObjectMap* ObjectMapLoadChemPyMap(PyMOLGlobals*, ObjectMap*, PyObject*, int, int, int)’:
layer2/ObjectMap.cpp:5809:24: warning: comparison of integer expressions of different signedness: ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
 5809 |     if(I->State.size() <= state) {
      |        ~~~~~~~~~~~~~~~~^~~~~~~~
In file included from /usr/include/c++/12/cassert:44,
                 from layer0/Field.h:24,
                 from layer0/Isosurf.h:24,
                 from layer2/ObjectMap.h:25,
                 from layer2/ObjectMap.cpp:27:
layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = float; SizeTs = {int, int, int, int}]’:
layer2/ObjectMap.cpp:198:30:   required from here
layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare]
  100 |     assert(sizeof...(pos) <= n_dim());
      |            ~~~~~~~~~~~~~~~^~~~~~~~~~
layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = float; SizeTs = {int, int, int}]’:
layer2/ObjectMap.cpp:1605:14:   required from here
layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare]
layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = int; SizeTs = {int, int, int}]’:
layer0/Field.h:114:19:   required from ‘T& CField::get(SizeTs ...) [with T = int; SizeTs = {int, int, int}]’
layer2/ObjectMap.cpp:5967:46:   required from here
layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare]
In file included from /usr/lib64/python3.11/site-packages/numpy/core/include/numpy/ndarrayobject.h:21,
                 from /usr/lib64/python3.11/site-packages/numpy/core/include/numpy/arrayobject.h:5,
                 from layer0/os_numpy.h:8,
                 from layer2/ObjectMap.cpp:22:
/usr/lib64/python3.11/site-packages/numpy/core/include/numpy/__multiarray_api.h: At global scope:
/usr/lib64/python3.11/site-packages/numpy/core/include/numpy/__multiarray_api.h:1477:1: warning: ‘int _import_array()’ defined but not used [-Wunused-function]
 1477 | _import_array(void)
      | ^~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/RepMesh.cpp -o build/temp.linux-x86_64-cpython-311/layer2/RepMesh.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer2/ObjectMap.cpp: In function ‘ObjectMapDump(ObjectMap const*, char const*, int, int)’:
layer2/ObjectMap.cpp:5982:24: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 239 [-Wformat-truncation=]
 5982 |       " ObjectMapDump: %s written to %s\n", om->Name, fname ENDFB(om->G);
      |                        ^~
In file included from /usr/include/stdio.h:906,
                 from /usr/include/python3.11/Python.h:24,
                 from layer0/os_python.h:34,
                 from layer2/ObjectMap.cpp:21:
In function ‘snprintf’,
    inlined from ‘ObjectMapDump(ObjectMap const*, char const*, int, int)’ at layer2/ObjectMap.cpp:5981:5:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output 30 or more bytes (assuming 285) into a destination of size 255
   54 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   55 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   56 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/cassert:44,
                 from layer0/Field.h:24,
                 from layer0/Isosurf.h:24,
                 from layer2/RepMesh.cpp:28:
layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = float; SizeTs = {int, int, int}]’:
layer2/RepMesh.cpp:970:27:   required from here
layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare]
  100 |     assert(sizeof...(pos) <= n_dim());
      |            ~~~~~~~~~~~~~~~^~~~~~~~~~
layer2/RepMesh.cpp: In function ‘RepMeshNew(CoordSet*, int)’:
layer2/RepMesh.cpp:1053:13: warning: ‘field’ may be used uninitialized [-Wmaybe-uninitialized]
 1053 |     DeleteP(field);
      |             ^~~~~
layer2/RepMesh.cpp:715:13: note: ‘field’ was declared here
  715 |   Isofield *field;
      |             ^~~~~
layer2/ObjectMap.cpp: In function ‘ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, char const*, int, int, int, int)’:
layer2/ObjectMap.cpp:2961:22: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=]
 2961 |       " PHIStrToMap: %s\n", cc ENDFB(I->G);
      |                      ^~     ~~
In function ‘snprintf’,
    inlined from ‘ObjectMapPHIStrToMap(ObjectMap*, char*, int, int, int)’ at layer2/ObjectMap.cpp:2960:5,
    inlined from ‘ObjectMapReadPHIStr(PyMOLGlobals*, ObjectMap*, char*, int, int, int)’ at layer2/ObjectMap.cpp:4803:25,
    inlined from ‘ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, char const*, int, int, int, int)’ at layer2/ObjectMap.cpp:4835:28:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 16 and 1039 bytes into a destination of size 255
   54 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   55 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   56 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp: In function ‘ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, char const*, int, int, int, int)’:
layer2/ObjectMap.cpp:2970:22: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=]
 2970 |       " PHIStrToMap: %s\n", cc ENDFB(I->G);
      |                      ^~     ~~
In function ‘snprintf’,
    inlined from ‘ObjectMapPHIStrToMap(ObjectMap*, char*, int, int, int)’ at layer2/ObjectMap.cpp:2969:5,
    inlined from ‘ObjectMapReadPHIStr(PyMOLGlobals*, ObjectMap*, char*, int, int, int)’ at layer2/ObjectMap.cpp:4803:25,
    inlined from ‘ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, char const*, int, int, int, int)’ at layer2/ObjectMap.cpp:4835:28:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 16 and 1039 bytes into a destination of size 255
   54 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   55 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   56 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp: In function ‘ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, char const*, int, int, int, int)’:
layer2/ObjectMap.cpp:2976:22: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=]
 2976 |       " PHIStrToMap: %s\n", cc ENDFB(I->G);
      |                      ^~     ~~
In function ‘snprintf’,
    inlined from ‘ObjectMapPHIStrToMap(ObjectMap*, char*, int, int, int)’ at layer2/ObjectMap.cpp:2975:5,
    inlined from ‘ObjectMapReadPHIStr(PyMOLGlobals*, ObjectMap*, char*, int, int, int)’ at layer2/ObjectMap.cpp:4803:25,
    inlined from ‘ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, char const*, int, int, int, int)’ at layer2/ObjectMap.cpp:4835:28:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 16 and 1039 bytes into a destination of size 255
   54 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   55 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   56 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp: In function ‘ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, char const*, int, int, int, int)’:
layer2/ObjectMap.cpp:3058:22: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=]
 3058 |       " PHIStrToMap: %s\n", cc ENDFB(I->G);
      |                      ^~     ~~
In function ‘snprintf’,
    inlined from ‘ObjectMapPHIStrToMap(ObjectMap*, char*, int, int, int)’ at layer2/ObjectMap.cpp:3057:5,
    inlined from ‘ObjectMapReadPHIStr(PyMOLGlobals*, ObjectMap*, char*, int, int, int)’ at layer2/ObjectMap.cpp:4803:25,
    inlined from ‘ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, char const*, int, int, int, int)’ at layer2/ObjectMap.cpp:4835:28:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 16 and 1039 bytes into a destination of size 255
   54 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   55 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   56 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/RepNonbonded.cpp -o build/temp.linux-x86_64-cpython-311/layer2/RepNonbonded.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer2/ObjectMap.cpp: In function ‘ObjectMapGRDStrToMap(ObjectMap*, char*, int, int, int) [clone .isra.0]’:
layer2/ObjectMap.cpp:4290:18: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 243 [-Wformat-truncation=]
 4290 |     " ObjectMap: %s\n", cc ENDFB(I->G);
      |                  ^~     ~~
In function ‘snprintf’,
    inlined from ‘ObjectMapGRDStrToMap(ObjectMap*, char*, int, int, int) [clone .isra.0]’ at layer2/ObjectMap.cpp:4289:3:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 14 and 1037 bytes into a destination of size 255
   54 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   55 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   56 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp: In function ‘ObjectMapGRDStrToMap(ObjectMap*, char*, int, int, int) [clone .isra.0]’:
layer2/ObjectMap.cpp:4290:18: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 243 [-Wformat-truncation=]
 4290 |     " ObjectMap: %s\n", cc ENDFB(I->G);
      |                  ^~     ~~
In function ‘snprintf’,
    inlined from ‘ObjectMapGRDStrToMap(ObjectMap*, char*, int, int, int) [clone .isra.0]’ at layer2/ObjectMap.cpp:4289:3:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 14 and 1037 bytes into a destination of size 255
   54 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   55 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   56 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/RepNonbondedSphere.cpp -o build/temp.linux-x86_64-cpython-311/layer2/RepNonbondedSphere.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/ObjectMesh.cpp -o build/temp.linux-x86_64-cpython-311/layer2/ObjectMesh.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/RepRibbon.cpp -o build/temp.linux-x86_64-cpython-311/layer2/RepRibbon.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer2/ObjectMesh.cpp: In member function ‘ObjectMesh::update()’:
layer2/ObjectMesh.cpp:502:41: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 226 [-Wformat-truncation=]
  502 |           "ObjectMeshUpdate-Error: map '%s' has been deleted.\n", ms->MapName
      |                                         ^~
In file included from layer1/Ortho.h:32,
                 from layer1/Scene.h:23,
                 from layer2/ObjectMesh.cpp:33:
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 50 and 305 bytes into a destination of size 255
  274 |     (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |               ^
layer2/ObjectMesh.cpp:535:40: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 232 [-Wformat-truncation=]
  535 |               " ObjectMesh: updating \"%s\".\n", I->Name ENDFB(G);
      |                                        ^~
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 27 and 282 bytes into a destination of size 255
  274 |     (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |               ^
layer2/ObjectMesh.cpp: In function ‘ObjectMeshDump(ObjectMesh*, char const*, int, int)’:
layer2/ObjectMesh.cpp:329:27: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 238 [-Wformat-truncation=]
  329 |         " ObjectMeshDump: %s written to %s\n", I->Name, fname ENDFB(I->G);
      |                           ^~
layer0/Feedback.h:274:15: note: ‘snprintf’ output 31 or more bytes (assuming 286) into a destination of size 255
  274 |     (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |               ^
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/RepSphere.cpp -o build/temp.linux-x86_64-cpython-311/layer2/RepSphere.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/ObjectMolecule.cpp -o build/temp.linux-x86_64-cpython-311/layer2/ObjectMolecule.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer2/ObjectMolecule.cpp: In function ‘int ObjectMoleculeFillOpenValences(ObjectMolecule*, int)’:
layer2/ObjectMolecule.cpp:3531:14: warning: comparison of integer expressions of different signedness: ‘const unsigned int’ and ‘signed char’ [-Wsign-compare]
 3531 |       if((nn >= ai->valence) || (!flag))
      |           ~~~^~~~~~~~~~~~~~
layer2/ObjectMolecule.cpp: In function ‘pymol::Result<> ObjectMoleculeAddBondByIndices(ObjectMolecule*, unsigned int, unsigned int, int)’:
layer2/ObjectMolecule.cpp:4328:12: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
 4328 |   if (atm1 >= I->NAtom || atm2 >= I->NAtom) {
      |       ~~~~~^~~~~~~~~~~
layer2/ObjectMolecule.cpp:4328:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
 4328 |   if (atm1 >= I->NAtom || atm2 >= I->NAtom) {
      |                           ~~~~~^~~~~~~~~~~
layer2/ObjectMolecule.cpp: In member function ‘bool ObjectMolecule::atomHasAnyCoordinates(size_t) const’:
layer2/ObjectMolecule.cpp:11713:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare]
11713 |   for (size_t i = 0; i < NCSet; ++i) {
      |                      ~~^~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/RepSphereGenerate.cpp -o build/temp.linux-x86_64-cpython-311/layer2/RepSphereGenerate.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/RepSphereImmediate.cpp -o build/temp.linux-x86_64-cpython-311/layer2/RepSphereImmediate.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer2/ObjectMolecule.cpp: In function ‘ObjectMoleculeMOLStr2CoordSet(PyMOLGlobals*, char const*, AtomInfoType**, char const**) [clone .constprop.0]’:
layer2/ObjectMolecule.cpp:7579:37: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 224 [-Wformat-truncation=]
 7579 |     " ObjMolMOLStr2CoordSet: title '%s'\n", nameTmp ENDFB(G)
      |                                     ^~      ~~~~~~~
In file included from layer1/Ortho.h:32,
                 from layer2/ObjectMolecule.cpp:31:
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 34 and 289 bytes into a destination of size 255
  274 |     (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |               ^
layer2/ObjectMolecule.cpp:7627:16: warning: ‘strncpy’ output may be truncated copying 4 bytes from a string of length 1023 [-Wstringop-truncation]
 7627 |         strncpy(atInfo[a].elem, cc, cElemNameLen);
      |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/RepSurface.cpp -o build/temp.linux-x86_64-cpython-311/layer2/RepSurface.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer2/ObjectMolecule.cpp: In member function ‘ObjectMolecule::update()’:
layer2/ObjectMolecule.cpp:10605:82: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size between 181 and 191 [-Wformat-truncation=]
10605 |               " ObjectMolecule-DEBUG: updating representations for state %d of \"%s\".\n",
      |                                                                                  ^~
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 68 and 333 bytes into a destination of size 255
  274 |     (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |               ^
layer2/ObjectMolecule.cpp: In function ‘ObjectMoleculeMoveAtom(ObjectMolecule*, int, int, float const*, int, int)’:
layer2/ObjectMolecule.cpp:10731:43: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 1004 [-Wformat-overflow=]
10731 |       sprintf(line, "cmd.translate_atom(\"%s\",%15.9f,%15.9f,%15.9f,%d,%d,%d)\n",
      |                                           ^~
10732 |               buffer, v[0], v[1], v[2], state + 1, mode, 0);
      |               ~~~~~~                       
layer2/ObjectMolecule.cpp:10731:21: note: directive argument in the range [-2147483647, 2147483647]
10731 |       sprintf(line, "cmd.translate_atom(\"%s\",%15.9f,%15.9f,%15.9f,%d,%d,%d)\n",
      |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer2/ObjectMolecule.cpp:10731:14: note: ‘sprintf’ output between 78 and 2036 bytes into a destination of size 1024
10731 |       sprintf(line, "cmd.translate_atom(\"%s\",%15.9f,%15.9f,%15.9f,%d,%d,%d)\n",
      |       ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
10732 |               buffer, v[0], v[1], v[2], state + 1, mode, 0);
      |               ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer2/RepSurface.cpp: In function ‘void RepSurfaceSmoothEdges(RepSurface*)’:
layer2/RepSurface.cpp:4403:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 4403 |     for (auto j = 0; j < edges[i].size(); j += 3) {
      |                      ~~^~~~~~~~~~~~~~~~~
layer2/RepSurface.cpp:4415:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 4415 |     for (auto j = 0; j < edges[i].size(); j += 3) {
      |                      ~~^~~~~~~~~~~~~~~~~
layer2/RepSurface.cpp:4426:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 4426 |     for (auto i = 0; i < unique_edges.size(); i += 2) {
      |                      ~~^~~~~~~~~~~~~~~~~~~~~
In function ‘ObjectMoleculeXYZStr2CoordSet(PyMOLGlobals*, char const*, AtomInfoType**, char const**)’,
    inlined from ‘ObjectMoleculeReadStr(PyMOLGlobals*, ObjectMolecule*, char const**, cLoadType_t, int, int, int, int, char*, short, _OVLexicon*)’ at layer2/ObjectMolecule.cpp:8551:43:
layer2/ObjectMolecule.cpp:2898:16: warning: ‘strncpy’ output may be truncated copying 4 bytes from a string of length 1023 [-Wstringop-truncation]
 2898 |         strncpy(ai->elem, cc, cElemNameLen);
      |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/RepWireBond.cpp -o build/temp.linux-x86_64-cpython-311/layer2/RepWireBond.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/ObjectMolecule2.cpp -o build/temp.linux-x86_64-cpython-311/layer2/ObjectMolecule2.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer2/ObjectMolecule2.cpp: In function ‘bool ObjectMoleculeConnect(ObjectMolecule*, int&, pymol::vla<BondType>&, CoordSet*, int, int, bool)’:
layer2/ObjectMolecule2.cpp:3750:28: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
 3750 |     for (unsigned i = 0; i < cs->NIndex; ++i) {
      |                          ~~^~~~~~~~~~~~
layer2/ObjectMolecule2.cpp: In lambda function:
layer2/ObjectMolecule2.cpp:3779:15: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘const int’ [-Wsign-compare]
 3779 |         if (i <= j && !symop)
      |             ~~^~~~
layer2/ObjectMolecule2.cpp: In function ‘bool ObjectMoleculeConnect(ObjectMolecule*, int&, pymol::vla<BondType>&, CoordSet*, int, int, bool)’:
layer2/ObjectMolecule2.cpp:3884:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
 3884 |       for (unsigned i = 0; i < cs->NIndex; ++i) {
      |                            ~~^~~~~~~~~~~~
layer2/ObjectMolecule2.cpp:3900:28: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
 3900 |     for (unsigned a = 0; a < cs->NTmpBond; ++a) {
      |                          ~~^~~~~~~~~~~~~~
layer2/ObjectMolecule2.cpp:3950:28: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
 3950 |     for (unsigned a = 0; a < cs->NTmpLinkBond; ++a) {
      |                          ~~^~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/Sculpt.cpp -o build/temp.linux-x86_64-cpython-311/layer2/Sculpt.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer2/ObjectMolecule2.cpp: In function ‘ObjectMoleculeAddPseudoatom(ObjectMolecule*, int, char const*, char const*, char const*, char const*, char const*, char const*, float, int, float, float, char const*, float const*, int, int, int, int)’:
layer2/ObjectMolecule2.cpp:335:27: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 238 [-Wformat-truncation=]
  335 |         " ObjMol: created %s/%s/%s/%s`%d%c/%s\n",
      |                           ^~
In file included from /usr/include/stdio.h:906,
                 from /usr/include/python3.11/Python.h:24,
                 from layer0/os_python.h:34,
                 from layer2/ObjectMolecule2.cpp:24:
In function ‘snprintf’,
    inlined from ‘ObjectMoleculeAddPseudoatom(ObjectMolecule*, int, char const*, char const*, char const*, char const*, char const*, char const*, float, int, float, float, char const*, float const*, int, int, int, int)’ at layer2/ObjectMolecule2.cpp:334:7:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 26 and 291 bytes into a destination of size 255
   54 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   55 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   56 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/ObjectMolecule3.cpp -o build/temp.linux-x86_64-cpython-311/layer2/ObjectMolecule3.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/SculptCache.cpp -o build/temp.linux-x86_64-cpython-311/layer2/SculptCache.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/SideChainHelper.cpp -o build/temp.linux-x86_64-cpython-311/layer2/SideChainHelper.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer2/ObjectMolecule3.cpp: In function ‘std::vector<int> ObjectMoleculeGetMolMappingVec(const ObjectMolecule&)’:
layer2/ObjectMolecule3.cpp:42:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare]
   42 |   for (size_t b = 0; b < objmol.NBond; ++b) {
      |                      ~~^~~~~~~~~~~~~~
layer2/ObjectMolecule3.cpp: In function ‘void ObjectMoleculePBCUnwrap(ObjectMolecule&, bool)’:
layer2/ObjectMolecule3.cpp:151:34: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  151 |       for (unsigned atm = 0; atm != objmol.NAtom; ++atm) {
      |                              ~~~~^~~~~~~~~~~~~~~
In file included from layer1/PyMOLObject.h:26,
                 from layer2/ObjectMolecule.h:24,
                 from layer2/SideChainHelper.h:9,
                 from layer2/SideChainHelper.cpp:10:
In function ‘SettingUniqueGetTypedValuePtr(PyMOLGlobals*, int, int, int, bool*)’,
    inlined from ‘SettingUniqueGetIfDefined<bool>(PyMOLGlobals*, int, int, bool*)bool’ at layer1/Setting.h:447:39,
    inlined from ‘AtomSettingGetIfDefined<bool, AtomInfoType const>(PyMOLGlobals*, AtomInfoType const*, int, bool*)bool’ at layer2/AtomInfo.h:496:33,
    inlined from ‘AtomSettingGetWD<bool, AtomInfoType const>(PyMOLGlobals*, AtomInfoType const*, int, bool)bool’ at layer2/AtomInfo.h:506:36,
    inlined from ‘SideChainHelperMarkNonCartoonBonded(bool*, ObjectMolecule const*, CoordSet const*, bool, bool)’ at layer2/SideChainHelper.cpp:47:26:
layer1/Setting.h:436:11: warning: ‘out’ may be used uninitialized [-Wmaybe-uninitialized]
  436 |   int i = *out;
      |           ^~~~
In file included from layer2/ObjectMolecule.h:25:
layer2/AtomInfo.h: In function ‘SideChainHelperMarkNonCartoonBonded(bool*, ObjectMolecule const*, CoordSet const*, bool, bool)’:
layer2/AtomInfo.h:505:5: note: ‘out’ was declared here
  505 |   V out;
      |     ^~~
In function ‘SettingUniqueGetTypedValuePtr(PyMOLGlobals*, int, int, int, bool*)’,
    inlined from ‘SettingUniqueGetIfDefined<bool>(PyMOLGlobals*, int, int, bool*)bool’ at layer1/Setting.h:447:39,
    inlined from ‘AtomSettingGetIfDefined<bool, AtomInfoType const>(PyMOLGlobals*, AtomInfoType const*, int, bool*)bool’ at layer2/AtomInfo.h:496:33,
    inlined from ‘AtomSettingGetWD<bool, AtomInfoType const>(PyMOLGlobals*, AtomInfoType const*, int, bool)bool’ at layer2/AtomInfo.h:506:36,
    inlined from ‘SideChainHelperMarkNonCartoonBonded(bool*, ObjectMolecule const*, CoordSet const*, bool, bool)’ at layer2/SideChainHelper.cpp:49:26:
layer1/Setting.h:436:11: warning: ‘out’ may be used uninitialized [-Wmaybe-uninitialized]
  436 |   int i = *out;
      |           ^~~~
layer2/AtomInfo.h: In function ‘SideChainHelperMarkNonCartoonBonded(bool*, ObjectMolecule const*, CoordSet const*, bool, bool)’:
layer2/AtomInfo.h:505:5: note: ‘out’ was declared here
  505 |   V out;
      |     ^~~
In function ‘SettingUniqueGetTypedValuePtr(PyMOLGlobals*, int, int, int, bool*)’,
    inlined from ‘SettingUniqueGetIfDefined<bool>(PyMOLGlobals*, int, int, bool*)bool’ at layer1/Setting.h:447:39,
    inlined from ‘AtomSettingGetIfDefined<bool, AtomInfoType const>(PyMOLGlobals*, AtomInfoType const*, int, bool*)bool’ at layer2/AtomInfo.h:496:33,
    inlined from ‘AtomSettingGetWD<bool, AtomInfoType const>(PyMOLGlobals*, AtomInfoType const*, int, bool)bool’ at layer2/AtomInfo.h:506:36,
    inlined from ‘SideChainHelperMarkNonCartoonBonded(bool*, ObjectMolecule const*, CoordSet const*, bool, bool)’ at layer2/SideChainHelper.cpp:55:26:
layer1/Setting.h:436:11: warning: ‘out’ may be used uninitialized [-Wmaybe-uninitialized]
  436 |   int i = *out;
      |           ^~~~
layer2/AtomInfo.h: In function ‘SideChainHelperMarkNonCartoonBonded(bool*, ObjectMolecule const*, CoordSet const*, bool, bool)’:
layer2/AtomInfo.h:505:5: note: ‘out’ was declared here
  505 |   V out;
      |     ^~~
In function ‘SettingUniqueGetTypedValuePtr(PyMOLGlobals*, int, int, int, bool*)’,
    inlined from ‘SettingUniqueGetIfDefined<bool>(PyMOLGlobals*, int, int, bool*)bool’ at layer1/Setting.h:447:39,
    inlined from ‘AtomSettingGetIfDefined<bool, AtomInfoType const>(PyMOLGlobals*, AtomInfoType const*, int, bool*)bool’ at layer2/AtomInfo.h:496:33,
    inlined from ‘AtomSettingGetWD<bool, AtomInfoType const>(PyMOLGlobals*, AtomInfoType const*, int, bool)bool’ at layer2/AtomInfo.h:506:36,
    inlined from ‘SideChainHelperMarkNonCartoonBonded(bool*, ObjectMolecule const*, CoordSet const*, bool, bool)’ at layer2/SideChainHelper.cpp:57:26:
layer1/Setting.h:436:11: warning: ‘out’ may be used uninitialized [-Wmaybe-uninitialized]
  436 |   int i = *out;
      |           ^~~~
layer2/AtomInfo.h: In function ‘SideChainHelperMarkNonCartoonBonded(bool*, ObjectMolecule const*, CoordSet const*, bool, bool)’:
layer2/AtomInfo.h:505:5: note: ‘out’ was declared here
  505 |   V out;
      |     ^~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/VFont.cpp -o build/temp.linux-x86_64-cpython-311/layer2/VFont.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/ObjectSlice.cpp -o build/temp.linux-x86_64-cpython-311/layer2/ObjectSlice.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer2/ObjectSlice.cpp: In function ‘PyObject* ObjectSliceAllStatesAsPyList(ObjectSlice*)’:
layer2/ObjectSlice.cpp:78:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectSliceState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   78 |   for(a = 0; a < I->State.size(); a++) {
      |              ~~^~~~~~~~~~~~~~~~~
layer2/ObjectSlice.cpp: In member function ‘virtual void ObjectSlice::invalidate(cRep_t, cRepInv_t, int)’:
layer2/ObjectSlice.cpp:210:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectSliceState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  210 |   for(a = 0; a < State.size(); a++) {
      |              ~~^~~~~~~~~~~~~~
layer2/ObjectSlice.cpp: In member function ‘virtual void ObjectSlice::update()’:
layer2/ObjectSlice.cpp:633:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectSliceState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  633 |   for(a = 0; a < I->State.size(); a++) {
      |              ~~^~~~~~~~~~~~~~~~~
layer2/ObjectSlice.cpp: In function ‘void ObjectSliceDrag(ObjectSlice*, int, int, float*, float*, float*)’:
layer2/ObjectSlice.cpp:679:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectSliceState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  679 |     if(state < I->State.size())
      |        ~~~~~~^~~~~~~~~~~~~~~~~
layer2/ObjectSlice.cpp: In function ‘int ObjectSliceGetVertex(ObjectSlice*, int, int, float*)’:
layer2/ObjectSlice.cpp:750:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectSliceState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  750 |     if(state < I->State.size())
      |        ~~~~~~^~~~~~~~~~~~~~~~~
layer2/ObjectSlice.cpp: In member function ‘virtual void ObjectSlice::render(RenderInfo*)’:
layer2/ObjectSlice.cpp:925:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectSliceState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  925 |       if(state < I->State.size())
      |          ~~~~~~^~~~~~~~~~~~~~~~~
layer2/ObjectSlice.cpp:967:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectSliceState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  967 |         if(cur_state >= I->State.size())
      |            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~
layer2/ObjectSlice.cpp:981:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectSliceState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  981 |     if(state < I->State.size())
      |        ~~~~~~^~~~~~~~~~~~~~~~~
layer2/ObjectSlice.cpp:1226:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectSliceState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1226 |     if(cur_state >= I->State.size())
      |        ~~~~~~~~~~^~~~~~~~~~~~~~~~~~
layer2/ObjectSlice.cpp: In function ‘ObjectSliceState* ObjectSliceStateGetActive(ObjectSlice*, int)’:
layer2/ObjectSlice.cpp:1244:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectSliceState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1244 |     if(state < I->State.size()) {
      |        ~~~~~~^~~~~~~~~~~~~~~~~
layer2/ObjectSlice.cpp: In function ‘ObjectSlice* ObjectSliceFromMap(PyMOLGlobals*, ObjectSlice*, ObjectMap*, int, int)’:
layer2/ObjectSlice.cpp:1285:22: warning: comparison of integer expressions of different signedness: ‘std::vector<ObjectSliceState>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
 1285 |   if(I->State.size() <= state) {
      |      ~~~~~~~~~~~~~~~~^~~~~~~~
layer2/ObjectSlice.cpp: In function ‘void ObjectSliceRecomputeExtent(ObjectSlice*)’:
layer2/ObjectSlice.cpp:1362:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectSliceState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1362 |   for(a = 0; a < I->State.size(); a++) {
      |              ~~^~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer3/AtomIterators.cpp -o build/temp.linux-x86_64-cpython-311/layer3/AtomIterators.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer2/ObjectSlice.cpp: In member function ‘ObjectSlice::update()’:
layer2/ObjectSlice.cpp:639:42: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 225 [-Wformat-truncation=]
  639 |           "ObjectSliceUpdate-Error: map '%s' has been deleted.\n", oss->MapName
      |                                          ^~
In file included from layer1/Ortho.h:32,
                 from layer1/Scene.h:23,
                 from layer2/ObjectSlice.cpp:34:
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 51 and 306 bytes into a destination of size 255
  274 |     (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |               ^
layer2/ObjectSlice.cpp:650:39: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 231 [-Wformat-truncation=]
  650 |             " ObjectSlice: updating \"%s\".\n", I->Name ENDFB(I->G);
      |                                       ^~
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 28 and 283 bytes into a destination of size 255
  274 |     (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |               ^
layer3/AtomIterators.cpp: In member function ‘virtual bool SeleAtomIterator::next()’:
layer3/AtomIterators.cpp:61:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   61 |   while ((++a) < I->Table.size()) {
      |          ~~~~~~^~~~~~~~~~~~~~~~~
layer3/AtomIterators.cpp: In member function ‘virtual bool SeleCoordIterator::next()’:
layer3/AtomIterators.cpp:129:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  129 |   for (a++; a < I->Table.size(); a++) {
      |             ~~^~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer3/CifDataValueFormatter.cpp -o build/temp.linux-x86_64-cpython-311/layer3/CifDataValueFormatter.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/ObjectSurface.cpp -o build/temp.linux-x86_64-cpython-311/layer2/ObjectSurface.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer3/Editor.cpp -o build/temp.linux-x86_64-cpython-311/layer3/Editor.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer2/ObjectSurface.cpp: In function ‘PyObject* ObjectSurfaceAllStatesAsPyList(ObjectSurface*)’:
layer2/ObjectSurface.cpp:83:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectSurfaceState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   83 |   for(int a = 0; a < I->State.size(); a++) {
      |                  ~~^~~~~~~~~~~~~~~~~
layer2/ObjectSurface.cpp: In function ‘void ObjectSurfaceDump(ObjectSurface*, const char*, int, int)’:
layer2/ObjectSurface.cpp:236:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectSurfaceState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  236 |     if(state < I->State.size()) {
      |        ~~~~~~^~~~~~~~~~~~~~~~~
layer2/ObjectSurface.cpp: In member function ‘virtual void ObjectSurface::invalidate(cRep_t, cRepInv_t, int)’:
layer2/ObjectSurface.cpp:281:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectSurfaceState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  281 |     for(int a = 0; a < I->State.size(); a++) {
      |                    ~~^~~~~~~~~~~~~~~~~
layer2/ObjectSurface.cpp: In function ‘int ObjectSurfaceInvalidateMapName(ObjectSurface*, const char*, const char*)’:
layer2/ObjectSurface.cpp:311:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectSurfaceState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  311 |   for(int a = 0; a < I->State.size(); a++) {
      |                  ~~^~~~~~~~~~~~~~~~~
layer2/ObjectSurface.cpp: In function ‘ObjectSurface* ObjectSurfaceFromBox(PyMOLGlobals*, ObjectSurface*, ObjectMap*, int, int, float*, float*, float, cIsosurfaceMode, float, pymol::vla<float>&&, cIsosurfaceSide, int)’:
layer2/ObjectSurface.cpp:1029:22: warning: comparison of integer expressions of different signedness: ‘std::vector<ObjectSurfaceState>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
 1029 |   if(I->State.size() <= state) {
      |      ~~~~~~~~~~~~~~~~^~~~~~~~
layer2/ObjectSurface.cpp: In function ‘int ObjectSurfaceSetLevel(ObjectSurface*, float, int, int)’:
layer2/ObjectSurface.cpp:1125:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectSurfaceState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1125 |     for(int a = 0; a < I->State.size(); a++) {
      |                    ~~^~~~~~~~~~~~~~~~~
layer3/Editor.cpp: In function ‘pymol::Result<> EditorSelect(PyMOLGlobals*, const char*, const char*, const char*, const char*, int, int, int)’:
layer3/Editor.cpp:776:7: warning: variable ‘result’ set but not used [-Wunused-but-set-variable]
  776 |   int result = false;
      |       ^~~~~~
layer3/Editor.cpp: In function ‘EditorDefineExtraPks(PyMOLGlobals*)’:
layer3/Editor.cpp:335:29: warning: ‘%s’ directive writing up to 255 bytes into a region of size 249 [-Wformat-overflow=]
  335 |     sprintf(buffer, "(byres %s)", name);
      |                             ^~    ~~~~
layer3/Editor.cpp:335:12: note: ‘sprintf’ output between 9 and 264 bytes into a destination of size 256
  335 |     sprintf(buffer, "(byres %s)", name);
      |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Editor.cpp:337:31: warning: ‘%s’ directive writing up to 255 bytes into a region of size 247 [-Wformat-overflow=]
  337 |     sprintf(buffer, "(bychain %s)", name);
      |                               ^~    ~~~~
layer3/Editor.cpp:337:12: note: ‘sprintf’ output between 11 and 266 bytes into a destination of size 256
  337 |     sprintf(buffer, "(bychain %s)", name);
      |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Editor.cpp:339:32: warning: ‘%s’ directive writing up to 255 bytes into a region of size 246 [-Wformat-overflow=]
  339 |     sprintf(buffer, "(byobject %s)", name);
      |                                ^~    ~~~~
layer3/Editor.cpp:339:12: note: ‘sprintf’ output between 12 and 267 bytes into a destination of size 256
  339 |     sprintf(buffer, "(byobject %s)", name);
      |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer2/ObjectSurface.cpp: In function ‘ObjectSurfaceDump(ObjectSurface*, char const*, int, int)’:
layer2/ObjectSurface.cpp:268:30: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 235 [-Wformat-truncation=]
  268 |         " ObjectSurfaceDump: %s written to %s\n", I->Name, fname ENDFB(I->G);
      |                              ^~
In file included from layer1/Ortho.h:32,
                 from layer1/Scene.h:23,
                 from layer2/ObjectSurface.cpp:35:
layer0/Feedback.h:274:15: note: ‘snprintf’ output 34 or more bytes (assuming 289) into a destination of size 255
  274 |     (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |               ^
layer3/Editor.cpp: In function ‘EditorPrepareDrag(PyMOLGlobals*, pymol::CObject*, int, int, int, int)’:
layer3/Editor.cpp:1933:29: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 236 [-Wformat-truncation=]
 1933 |         " Editor: grabbing (%s).", name ENDFB(G);
      |                             ^~     ~~~~
In file included from layer1/Ortho.h:32,
                 from layer1/ButMode.h:20,
                 from layer3/Editor.cpp:28:
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 22 and 277 bytes into a destination of size 255
  274 |     (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |               ^
layer2/ObjectSurface.cpp: In member function ‘ObjectSurface::update()’:
layer2/ObjectSurface.cpp:493:43: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 229 [-Wformat-truncation=]
  493 |               " ObjectSurface: updating \"%s\".\n", I->Name ENDFB(I->G);
      |                                           ^~
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 30 and 285 bytes into a destination of size 255
  274 |     (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |               ^
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer3/MoleculeExporter.cpp -o build/temp.linux-x86_64-cpython-311/layer3/MoleculeExporter.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer3/Executive.cpp -o build/temp.linux-x86_64-cpython-311/layer3/Executive.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer3/Executive.cpp: In function ‘pymol::Result<> ExecutiveIsosurfaceEtc(PyMOLGlobals*, const char*, const char*, float, const char*, float, int, float, int, int, int, int)’:
layer3/Executive.cpp:986:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  986 |         if(map_state >= mapObj->State.size())
      |            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp: In function ‘pymol::Result<> ExecutiveIsomeshEtc(PyMOLGlobals*, const char*, const char*, float, const char*, float, int, float, int, int, int, float)’:
layer3/Executive.cpp:1132:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1132 |         if(map_state >= mapObj->State.size())
      |            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp: In function ‘pymol::Result<> ExecutiveVolume(PyMOLGlobals*, const char*, const char*, float, const char*, float, int, float, int, int)’:
layer3/Executive.cpp:1305:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1305 |         if(map_state >= mapObj->State.size())
      |            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/cassert:44,
                 from /usr/include/glm/detail/func_exponential.inl:8,
                 from /usr/include/glm/exponential.hpp:110,
                 from /usr/include/glm/detail/func_geometric.inl:1,
                 from /usr/include/glm/geometric.hpp:116,
                 from /usr/include/glm/detail/func_matrix.inl:1,
                 from /usr/include/glm/matrix.hpp:161,
                 from /usr/include/glm/detail/type_mat2x2.inl:1,
                 from /usr/include/glm/detail/type_mat2x2.hpp:176,
                 from /usr/include/glm/ext/matrix_double2x2.hpp:5,
                 from /usr/include/glm/mat2x2.hpp:5,
                 from /usr/include/glm/glm.hpp:119,
                 from layer3/Executive.cpp:114:
layer3/Executive.cpp: In function ‘pymol::Result<> ExecutiveSmooth(PyMOLGlobals*, const char*, int, int, int, int, int, int, float, bool)’:
layer3/Executive.cpp:6095:17: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare]
 6095 |   assert(n_atom == SelectorCountAtoms(G, sele, cStateAll));
      |          ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp:6155:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare]
 6155 |       for (int c = 0; c < n_atom; ++c) {
      |                       ~~^~~~~~~~
layer3/Executive.cpp: In function ‘pymol::Result<> ExecutiveMapSet(PyMOLGlobals*, const char*, int, const char*, int, int, int, int)’:
layer3/Executive.cpp:6325:34: warning: comparison of integer expressions of different signedness: ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
 6325 |             if(obj->State.size() > max_n_state)
      |                ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
layer3/Executive.cpp:6436:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 6436 |                     if(src_state < obj->State.size()) {
      |                        ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp: In function ‘float ExecutiveRMSPairs(PyMOLGlobals*, const std::vector<SelectorTmp>&, int, bool)’:
layer3/Executive.cpp:11035:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
11035 |   for(a = 0; a < pairs; a++) {
      |              ~~^~~~~~~
layer3/Executive.cpp:11040:10: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
11040 |     if(a < (pairs - 1))
      |        ~~^~~~~~~~~~~~~
layer3/Executive.cpp: In function ‘pymol::Result<> ExecutiveColor(PyMOLGlobals*, const char*, const char*, int, int)’:
layer3/Executive.cpp:12401:7: warning: variable ‘ok’ set but not used [-Wunused-but-set-variable]
12401 |   int ok = false;
      |       ^~
layer3/Executive.cpp: In function ‘void ExecutiveSymExp(PyMOLGlobals*, const char*, const char*, const char*, float, int, int)’:
layer3/Executive.cpp:14066:40: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
14066 |             for (unsigned idx = 0; idx < cs->NIndex; ++idx) {
      |                                    ~~~~^~~~~~~~~~~~
layer3/Executive.cpp:14093:40: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
14093 |             for (unsigned atm = 0; atm < new_obj->NAtom; ++atm) {
      |                                    ~~~~^~~~~~~~~~~~~~~~
In file included from layer3/Executive.cpp:51:
layer3/Executive.cpp: In lambda function:
layer0/ListMacros.h:100:9: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  100 |         else \
      |         ^~~~
layer0/ListMacros.h:141:4: note: in expansion of macro ‘ListDetach’
  141 |    ListDetach(List,copy,Link,ElemType); \
      |    ^~~~~~~~~~
layer3/Executive.cpp:14194:7: note: in expansion of macro ‘ListDelete’
14194 |       ListDelete(I->Spec, rec, next, SpecRec);        /* NOTE: order N in list length! TO FIX */
      |       ^~~~~~~~~~
layer0/ListMacros.h:102:11: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  102 |           (Elem)->Link = NULL; \
      |           ^
layer0/ListMacros.h:141:4: note: in expansion of macro ‘ListDetach’
  141 |    ListDetach(List,copy,Link,ElemType); \
      |    ^~~~~~~~~~
layer3/Executive.cpp:14194:7: note: in expansion of macro ‘ListDelete’
14194 |       ListDelete(I->Spec, rec, next, SpecRec);        /* NOTE: order N in list length! TO FIX */
      |       ^~~~~~~~~~
layer3/Executive.cpp: In lambda function:
layer0/ListMacros.h:100:9: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  100 |         else \
      |         ^~~~
layer0/ListMacros.h:141:4: note: in expansion of macro ‘ListDetach’
  141 |    ListDetach(List,copy,Link,ElemType); \
      |    ^~~~~~~~~~
layer3/Executive.cpp:14206:7: note: in expansion of macro ‘ListDelete’
14206 |       ListDelete(I->Spec, rec, next, SpecRec);        /* NOTE: order N in list length! TO FIX */
      |       ^~~~~~~~~~
layer0/ListMacros.h:102:11: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  102 |           (Elem)->Link = NULL; \
      |           ^
layer0/ListMacros.h:141:4: note: in expansion of macro ‘ListDetach’
  141 |    ListDetach(List,copy,Link,ElemType); \
      |    ^~~~~~~~~~
layer3/Executive.cpp:14206:7: note: in expansion of macro ‘ListDelete’
14206 |       ListDelete(I->Spec, rec, next, SpecRec);        /* NOTE: order N in list length! TO FIX */
      |       ^~~~~~~~~~
layer3/Executive.cpp: In member function ‘virtual int CExecutive::click(int, int, int, int)’:
layer3/Executive.cpp:14873:68: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
14873 |               if(((panel->is_group) && (((xx) - 1) / DIP2PIXEL(8)) > (panel->nest_level + 1)) ||
      |                                        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp:14874:69: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
14874 |                  ((!panel->is_group) && (((xx) - 1) / DIP2PIXEL(8)) > panel->nest_level)) {
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp: In member function ‘virtual int CExecutive::release(int, int, int, int)’:
layer3/Executive.cpp:15162:65: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
15162 |                (((panel->is_group) && ((xx - 1) / DIP2PIXEL(8)) > (panel->nest_level + 1)) ||
      |                                       ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp:15163:66: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
15163 |                 ((!panel->is_group) && ((xx - 1) / DIP2PIXEL(8)) > panel->nest_level))) {
      |                                        ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp: In member function ‘virtual int CExecutive::drag(int, int, int)’:
layer3/Executive.cpp:15304:70: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
15304 |                   if(((panel->is_group) && ((xx - 1) / DIP2PIXEL(8)) > (panel->nest_level + 1)) ||
      |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp:15305:71: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
15305 |                      ((!panel->is_group) && ((xx - 1) / DIP2PIXEL(8)) > panel->nest_level)) {
      |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp:15340:71: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
15340 |                   if(!((panel->is_group) && ((xx - 1) / DIP2PIXEL(8)) > (panel->nest_level + 1))) {
      |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer0/OOMac.h:22,
                 from layer3/Executive.cpp:37:
layer3/Executive.cpp: In function ‘void ExecutiveFree(PyMOLGlobals*)’:
layer0/MemoryDebug.h:86:32: warning: deleting object of polymorphic class type ‘CExecutive’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
   86 | #define DeleteP(ptr) {if(ptr) {delete ptr;ptr=NULL;}}
layer3/Executive.cpp:16294:3: note: in expansion of macro ‘DeleteP’
16294 |   DeleteP(G->Executive);
      |   ^~~~~~~
layer3/Executive.cpp: In function ‘pymol::Result<> ExecutiveSliceNew(PyMOLGlobals*, const char*, const char*, int, int)’:
layer3/Executive.cpp:16607:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
16607 |         if(map_state >= mapObj->State.size())
      |            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
In file included from layer3/Executive.h:38,
                 from layer3/Executive.cpp:38:
layer0/TrackerList.h: In instantiation of ‘pymol::TrackerAdapter<T>::TrackerAdapterIterator<IsConst>::TrackerAdapterIterator(CTracker*, int) [with bool IsConst = false; T = SpecRec]’:
layer0/TrackerList.h:99:29:   required from ‘pymol::TrackerAdapter<T>::iterator pymol::TrackerAdapter<T>::begin() [with T = SpecRec; iterator = pymol::TrackerAdapter<SpecRec>::TrackerAdapterIterator<false>]’
layer3/Executive.cpp:202:62:   required from here
layer0/TrackerList.h:80:15: warning: ‘pymol::TrackerAdapter<SpecRec>::TrackerAdapterIterator<false>::m_tracker’ will be initialized after [-Wreorder]
   80 |     CTracker* m_tracker;
      |               ^~~~~~~~~
layer0/TrackerList.h:79:9: warning:   ‘int pymol::TrackerAdapter<SpecRec>::TrackerAdapterIterator<false>::m_iter_id’ [-Wreorder]
   79 |     int m_iter_id = -1;
      |         ^~~~~~~~~
layer0/TrackerList.h:35:14: warning:   when initialized here [-Wreorder]
   35 |     explicit TrackerAdapterIterator(CTracker* tracker, int list_id)
      |              ^~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp: In function ‘ExecutiveRemoveAtoms(PyMOLGlobals*, char const*, int)’:
layer3/Executive.cpp:9007:58: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size between 207 and 217 [-Wformat-truncation=]
 9007 |                 " Remove: eliminated %d atoms in model \"%s\".\n",
      |                                                          ^~
In file included from layer1/Ortho.h:32,
                 from layer3/ExecutiveDef.h:3,
                 from layer3/Executive.h:29:
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 42 and 307 bytes into a destination of size 255
  274 |     (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |               ^
layer3/Executive.cpp: In function ‘ExecutiveSetBondSettingFromString(PyMOLGlobals*, int, char const*, char const*, char const*, int, int, int)’:
layer3/Executive.cpp:11424:28: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
11424 |                 " Setting: %s set for %d bonds in object \"%s\".\n",
      |                            ^~
11425 |                 name, nSet, obj->Name ENDF(G);
      |                 ~~~~        
layer3/Executive.cpp:11424:17: note: directive argument in the range [1, 2147483647]
11424 |                 " Setting: %s set for %d bonds in object \"%s\".\n",
      |                 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer0/Feedback.h:282:53: note: ‘snprintf’ output between 42 and 560 bytes into a destination of size 255
  282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |                                                     ^
layer3/Executive.cpp: In function ‘ExecutiveGetBondSetting(PyMOLGlobals*, int, char*, char const*, int, int, int)’:
layer3/Executive.cpp:11505:26: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
11505 |               " Getting: %s for %d bonds in object \"%s\".\n",
      |                          ^~
11506 |               name, nSet, obj->Name ENDF(G);
      |               ~~~~        
layer3/Executive.cpp:11505:15: note: directive argument in the range [1, 2147483647]
11505 |               " Getting: %s for %d bonds in object \"%s\".\n",
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer0/Feedback.h:282:53: note: ‘snprintf’ output between 38 and 556 bytes into a destination of size 255
  282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |                                                     ^
layer3/Executive.cpp: In function ‘ExecutiveSetBondSetting(PyMOLGlobals*, int, _object*, char const*, char const*, int, int, int)’:
layer3/Executive.cpp:11605:62: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size between 208 and 217 [-Wformat-truncation=]
11605 |                   " Setting: %s set for %d bonds in object \"%s\".\n",
      |                                                              ^~
layer0/Feedback.h:282:53: note: ‘snprintf’ output 42 or more bytes (assuming 306) into a destination of size 255
  282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |                                                     ^
layer3/Executive.cpp: In function ‘ExecutiveUnsetBondSetting(PyMOLGlobals*, int, char const*, char const*, int, int, int)’:
layer3/Executive.cpp:11684:26: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
11684 |               " Setting: %s unset for %d bonds in object \"%s\".\n",
      |                          ^~
11685 |               name, nSet, rec->obj->Name ENDF(G);
      |               ~~~~        
layer3/Executive.cpp:11684:15: note: directive argument in the range [1, 2147483647]
11684 |               " Setting: %s unset for %d bonds in object \"%s\".\n",
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer0/Feedback.h:282:53: note: ‘snprintf’ output between 44 and 562 bytes into a destination of size 255
  282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |                                                     ^
layer3/Executive.cpp: In function ‘ExecutiveSetObjSettingFromString(PyMOLGlobals*, int, char const*, pymol::CObject*, int, int, int)’:
layer3/Executive.cpp:12226:30: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
12226 |                   " Setting: %s set to %s in object \"%s\", state %d.\n",
      |                              ^~
12227 |                   name, value2, obj->Name, state + 1 ENDF(G);
      |                   ~~~~        
layer3/Executive.cpp:12226:19: note: directive argument in the range [1, 2147483647]
12226 |                   " Setting: %s set to %s in object \"%s\", state %d.\n",
      |                   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer0/Feedback.h:282:53: note: ‘snprintf’ output between 43 and 1584 bytes into a destination of size 255
  282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |                                                     ^
layer3/Executive.cpp:12218:30: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
12218 |                   " Setting: %s set to %s in object \"%s\".\n",
      |                              ^~
12219 |                   name, value2, obj->Name ENDF(G);
      |                   ~~~~        
layer0/Feedback.h:282:53: note: ‘snprintf’ output between 34 and 1566 bytes into a destination of size 255
  282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |                                                     ^
layer3/Executive.cpp:12197:29: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
12197 |           PRINTF " Setting: %s set to %s.\n", name, value2 ENDF(G);
      |                             ^~                ~~~~
layer0/Feedback.h:282:53: note: ‘snprintf’ output between 21 and 1298 bytes into a destination of size 255
  282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |                                                     ^
layer3/Executive.cpp: In function ‘ExecutiveSetSettingFromString(PyMOLGlobals*, int, char const*, char const*, int, int, int)’:
layer3/Executive.cpp:12129:36: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
12129 |                         " Setting: %s set for %d atoms in object \"%s\".\n",
      |                                    ^~
12130 |                         name, op.i4, rec->obj->Name ENDF(G);
      |                         ~~~~        
layer0/Feedback.h:282:53: note: ‘snprintf’ output between 42 and 561 bytes into a destination of size 255
  282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |                                                     ^
layer3/Executive.cpp:12097:32: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
12097 |                     " Setting: %s set to %s in %d objects, state %d.\n",
      |                                ^~
12098 |                     name, value2, nObj, state + 1 ENDF(G);
      |                     ~~~~        
layer3/Executive.cpp:12097:21: note: directive argument in the range [1, 2147483647]
12097 |                     " Setting: %s set to %s in %d objects, state %d.\n",
      |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp:12097:21: note: directive argument in the range [1, 2147483647]
layer0/Feedback.h:282:53: note: ‘snprintf’ output between 43 and 1338 bytes into a destination of size 255
  282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |                                                     ^
layer3/Executive.cpp:12094:32: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
12094 |                     " Setting: %s set to %s in %d objects.\n", name, value2, nObj ENDF(G);
      |                                ^~                              ~~~~
layer3/Executive.cpp:12094:21: note: directive argument in the range [1, 2147483647]
12094 |                     " Setting: %s set to %s in %d objects.\n", name, value2, nObj ENDF(G);
      |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer0/Feedback.h:282:53: note: ‘snprintf’ output between 34 and 1320 bytes into a destination of size 255
  282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |                                                     ^
layer3/Executive.cpp:12161:36: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
12161 |                         " Setting: %s set to %s in object \"%s\", state %d.\n",
      |                                    ^~
12162 |                         name, value2, rec->obj->Name, state + 1 ENDF(G);
      |                         ~~~~        
layer3/Executive.cpp:12161:25: note: directive argument in the range [1, 2147483647]
12161 |                         " Setting: %s set to %s in object \"%s\", state %d.\n",
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer0/Feedback.h:282:53: note: ‘snprintf’ output between 43 and 1584 bytes into a destination of size 255
  282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |                                                     ^
layer3/Executive.cpp:12153:36: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
12153 |                         " Setting: %s set to %s in object \"%s\".\n",
      |                                    ^~
12154 |                         name, value2, rec->obj->Name ENDF(G);
      |                         ~~~~        
layer0/Feedback.h:282:53: note: ‘snprintf’ output between 34 and 1566 bytes into a destination of size 255
  282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |                                                     ^
layer3/Executive.cpp:12057:29: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
12057 |           PRINTF " Setting: %s set to %s.\n", name, value2 ENDF(G);
      |                             ^~                ~~~~
layer0/Feedback.h:282:53: note: ‘snprintf’ output between 21 and 1298 bytes into a destination of size 255
  282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |                                                     ^
layer3/Executive.cpp: In function ‘ExecutiveSetSymmetry(PyMOLGlobals*, pymol::zstring_view, int, CSymmetry const&, bool)’:
layer3/Executive.cpp:5951:43: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 202 [-Wformat-truncation=]
 5951 |       " %s-Details: Updated symmetry for '%s'\n", __func__, obj->Name ENDFB(G);
      |                                           ^~
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 56 and 311 bytes into a destination of size 255
  274 |     (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |               ^
layer3/Executive.cpp:5942:46: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 199 [-Wformat-truncation=]
 5942 |       " %s-Warning: Cannot set symmetry for '%s' (type %s)\n", __func__,
      |                                              ^~
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 84 and 339 bytes into a destination of size 255
  274 |     (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |               ^
layer3/Executive.cpp: In function ‘ExecutiveBond(PyMOLGlobals*, char const*, char const*, int, int, int, pymol::zstring_view)’:
layer3/Executive.cpp:9358:53: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size between 214 and 224 [-Wformat-truncation=]
 9358 |                   " Bond: %d bonds added to model \"%s\".\n", cnt, rec->obj->Name
      |                                                     ^~
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 35 and 300 bytes into a destination of size 255
  274 |     (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |               ^
layer3/Executive.cpp:9371:67: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size between 200 and 210 [-Wformat-truncation=]
 9371 |                   " Valence: %d bond valences adjusted in model \"%s\".\n", cnt,
      |                                                                   ^~
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 49 and 314 bytes into a destination of size 255
  274 |     (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |               ^
layer3/Executive.cpp:9383:59: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size between 208 and 218 [-Wformat-truncation=]
 9383 |                   " Unbond: %d bonds removed from model \"%s\".\n",
      |                                                           ^~
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 41 and 306 bytes into a destination of size 255
  274 |     (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |               ^
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer3/MovieScene.cpp -o build/temp.linux-x86_64-cpython-311/layer3/MovieScene.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer3/Executive.cpp: In function ‘ExecutiveSetSetting(PyMOLGlobals*, int, _object*, pymol::zstring_view, int, int, int)’:
layer3/Executive.cpp:11877:70: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 217 [-Wformat-truncation=]
11877 |                           " Setting: %s set for %d atoms in object \"%s\".\n",
      |                                                                      ^~
layer0/Feedback.h:282:53: note: ‘snprintf’ output 42 or more bytes (assuming 297) into a destination of size 255
  282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |                                                     ^
layer3/Executive.cpp:11788:42: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 237 [-Wformat-truncation=]
11788 |                     " Setting: %s set to %s in %d objects, state %d.\n",
      |                                          ^~
11789 |                     name, value, nObj, state + 1 ENDF(G);
      |                           ~~~~~           
layer3/Executive.cpp:11788:21: note: directive argument in the range [1, 2147483647]
11788 |                     " Setting: %s set to %s in %d objects, state %d.\n",
      |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp:11788:21: note: directive argument in the range [1, 2147483647]
layer0/Feedback.h:282:53: note: ‘snprintf’ output 43 or more bytes (assuming 1084) into a destination of size 255
  282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |                                                     ^
layer3/Executive.cpp:11785:42: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 237 [-Wformat-truncation=]
11785 |                     " Setting: %s set to %s in %d objects.\n", name, value, nObj ENDF(G);
      |                                          ^~                          ~~~~~
layer3/Executive.cpp:11785:21: note: directive argument in the range [1, 2147483647]
11785 |                     " Setting: %s set to %s in %d objects.\n", name, value, nObj ENDF(G);
      |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer0/Feedback.h:282:53: note: ‘snprintf’ output 34 or more bytes (assuming 1066) into a destination of size 255
  282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |                                                     ^
layer3/Executive.cpp:11909:46: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 237 [-Wformat-truncation=]
11909 |                         " Setting: %s set to %s in object \"%s\", state %d.\n",
      |                                              ^~
11910 |                         name, value, rec->obj->Name, state + 1 ENDF(G);
      |                               ~~~~~           
layer3/Executive.cpp:11909:25: note: directive argument in the range [1, 2147483647]
11909 |                         " Setting: %s set to %s in object \"%s\", state %d.\n",
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer0/Feedback.h:282:53: note: ‘snprintf’ output 43 or more bytes (assuming 1330) into a destination of size 255
  282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |                                                     ^
layer3/Executive.cpp:11902:46: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 237 [-Wformat-truncation=]
11902 |                         " Setting: %s set to %s in object \"%s\".\n",
      |                                              ^~
11903 |                         name, value, rec->obj->Name ENDF(G);
      |                               ~~~~~           
layer0/Feedback.h:282:53: note: ‘snprintf’ output 34 or more bytes (assuming 1312) into a destination of size 255
  282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |                                                     ^
layer3/Executive.cpp:11744:39: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 237 [-Wformat-truncation=]
11744 |           PRINTF " Setting: %s set to %s.\n", name, value ENDF(G);
      |                                       ^~            ~~~~~
layer0/Feedback.h:282:53: note: ‘snprintf’ output 21 or more bytes (assuming 1044) into a destination of size 255
  282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |                                                     ^
layer3/Executive.cpp: In function ‘ExecutiveUnsetSetting(PyMOLGlobals*, int, pymol::zstring_view, int, int, int)’:
layer3/Executive.cpp:12338:68: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 215 [-Wformat-truncation=]
12338 |                       " Setting: %s unset for %d atoms in object \"%s\".\n",
      |                                                                    ^~
layer0/Feedback.h:282:53: note: ‘snprintf’ output 44 or more bytes (assuming 299) into a destination of size 255
  282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |                                                     ^
layer3/Executive.cpp:12360:57: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 227 [-Wformat-truncation=]
12360 |                         " Setting: %s unset in object \"%s\", state %d.\n",
      |                                                         ^~
layer3/Executive.cpp:12360:25: note: directive argument in the range [1, 2147483647]
12360 |                         " Setting: %s unset in object \"%s\", state %d.\n",
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer0/Feedback.h:282:53: note: ‘snprintf’ output 41 or more bytes (assuming 305) into a destination of size 255
  282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |                                                     ^
layer3/Executive.cpp:12354:57: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 227 [-Wformat-truncation=]
12354 |                         " Setting: %s unset in object \"%s\".\n",
      |                                                         ^~
layer0/Feedback.h:282:53: note: ‘snprintf’ output 32 or more bytes (assuming 287) into a destination of size 255
  282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |                                                     ^
layer3/Executive.cpp: In function ‘ExecutiveManageObject(PyMOLGlobals*, pymol::CObject*, int, int)’:
layer3/Executive.cpp:14447:37: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 229 [-Wformat-truncation=]
14447 |         " Executive-Warning: name \"%s\" collides with a selection language keyword.\n",
      |                                     ^~
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 73 and 328 bytes into a destination of size 255
  274 |     (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |               ^
layer3/Executive.cpp:14442:36: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 230 [-Wformat-truncation=]
14442 |         " Executive: object name \"%s\" is illegal -- renamed to 'all_'.\n", obj->Name
      |                                    ^~
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 61 and 316 bytes into a destination of size 255
  274 |     (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |               ^
layer3/Executive.cpp:14473:11: warning: ‘strcpy’ offset 0 is out of the bounds [0, 0] [-Warray-bounds]
14473 |     strcpy(rec->name, obj->Name);
      |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp: In function ‘ExecutiveCopy(PyMOLGlobals*, char const*, char const*, int)’:
layer3/Executive.cpp:9665:25: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 236 [-Wformat-truncation=]
 9665 |     " Executive: object %s created.\n", oDst->Name ENDFB(G);
      |                         ^~
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 30 and 285 bytes into a destination of size 255
  274 |     (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |               ^
layer3/Executive.cpp: In member function ‘CExecutive::drag(int, int, int)’:
layer3/Executive.cpp:15471:55: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 1013 [-Wformat-overflow=]
15471 |                   sprintf(I->ReorderLog, "cmd.order(\"%s\",location=\"%s\")\n",
      |                                                       ^~
15472 |                           order_input, (location == -2) ? "upper" : "current");
      |                           ~~~~~~~~~~~                  
layer3/Executive.cpp:15471:26: note: ‘sprintf’ output between 32 and 1057 bytes into a destination of size 1024
15471 |                   sprintf(I->ReorderLog, "cmd.order(\"%s\",location=\"%s\")\n",
      |                   ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
15472 |                           order_input, (location == -2) ? "upper" : "current");
      |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp: In function ‘ExecutiveSpectrum(PyMOLGlobals*, pymol::zstring_view, pymol::zstring_view, float, float, int, int, pymol::zstring_view, int, int, int)’:
layer3/Executive.cpp:4764:24: warning: ‘strncpy’ specified bound 8 equals destination size [-Wstringop-truncation]
 4764 |                 strncpy(value_s, raw_ptr, sizeof(value_e));
      |                 ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp: In function ‘ExecutiveGroup(PyMOLGlobals*, pymol::zstring_view, pymol::zstring_view, int, int)’:
layer3/Executive.cpp:2259:40: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 235 [-Wformat-truncation=]
 2259 |                   " Executive: adding '%s' to group '%s'.\n", rec.name, rec.group_name
      |                                        ^~
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 36 and 546 bytes into a destination of size 255
  274 |     (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |               ^
layer3/Executive.cpp: In function ‘ExecutiveSetName(PyMOLGlobals*, pymol::zstring_view, pymol::zstring_view, bool)’:
layer3/Executive.cpp:3523:41: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 222 [-Wformat-truncation=]
 3523 |       " Warning: Invalid characters in '%s' have been replaced or stripped\n",
      |                                         ^~
 3524 |       name ENDFB(G);
      |       ~~~~                               
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 67 and 322 bytes into a destination of size 255
  274 |     (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |               ^
layer3/Executive.cpp: In function ‘ExecutiveSetSession(PyMOLGlobals*, _object*, int, int)’:
layer3/Executive.cpp:5070:57: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 213 [-Wformat-truncation=]
 5070 |             " Executive: skipping unrecognized object \"%s\" of type %d.\n",
      |                                                         ^~
In function ‘ExecutiveSetNamedEntries(PyMOLGlobals*, _object*, int, int, int)’,
    inlined from ‘ExecutiveSetSession(PyMOLGlobals*, _object*, int, int)’ at layer3/Executive.cpp:5696:38:
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 56 and 321 bytes into a destination of size 255
  274 |     (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |               ^
layer3/Executive.cpp: In function ‘ExecutiveSetSession(PyMOLGlobals*, _object*, int, int)’:
layer3/Executive.cpp:5095:58: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 210 [-Wformat-truncation=]
 5095 |           "ExectiveSetNamedEntries-Error: after object \"%s\".\n", rec->name ENDFB(G);
      |                                                          ^~
In function ‘ExecutiveSetNamedEntries(PyMOLGlobals*, _object*, int, int, int)’,
    inlined from ‘ExecutiveSetSession(PyMOLGlobals*, _object*, int, int)’ at layer3/Executive.cpp:5696:38:
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 49 and 304 bytes into a destination of size 255
  274 |     (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |               ^
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer3/PlugIOManager.cpp -o build/temp.linux-x86_64-cpython-311/layer3/PlugIOManager.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer3/PlugIOManager.cpp: In function ‘ObjectMap* PlugIOManagerLoadVol(PyMOLGlobals*, ObjectMap*, const char*, int, int, const char*)’:
layer3/PlugIOManager.cpp:416:34: warning: comparison of integer expressions of different signedness: ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  416 |             if(obj->State.size() <= state) {
      |                ~~~~~~~~~~~~~~~~~~^~~~~~~~
In file included from /usr/include/c++/12/cassert:44,
                 from layer0/Field.h:24,
                 from layer0/Isosurf.h:24,
                 from layer2/ObjectMap.h:25,
                 from layer3/PlugIOManager.h:23,
                 from layer3/PlugIOManager.cpp:24:
layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = float; SizeTs = {int, int, int}]’:
layer0/Field.h:114:19:   required from ‘T& CField::get(SizeTs ...) [with T = float; SizeTs = {int, int, int}]’
layer3/PlugIOManager.cpp:541:21:   required from here
layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare]
  100 |     assert(sizeof...(pos) <= n_dim());
      |            ~~~~~~~~~~~~~~~^~~~~~~~~~
layer3/PlugIOManager.cpp: In function ‘PlugIOManagerLoad’:
layer3/PlugIOManager.cpp:946:65: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 200 [-Wformat-truncation=]
  946 |         " PlugIOManagerLoad: can't load trajectory into object '%s'\n", obj->Name ENDFB(G);
      |                                                                 ^~
In file included from /usr/include/stdio.h:906,
                 from /usr/include/python3.11/Python.h:24,
                 from layer0/os_python.h:34,
                 from layer3/PlugIOManager.cpp:20:
In function ‘snprintf’,
    inlined from ‘PlugIOManagerLoad’ at layer3/PlugIOManager.cpp:945:7:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 58 and 313 bytes into a destination of size 255
   54 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   55 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   56 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer3/RingFinder.cpp -o build/temp.linux-x86_64-cpython-311/layer3/RingFinder.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer3/RingFinder.cpp: In member function ‘void AbstractRingFinder::recursion(int, int)’:
layer3/RingFinder.cpp:23:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   23 |     } else if (depth < m_indices.size() - 1) {
      |                ~~~~~~^~~~~~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer3/Seeker.cpp -o build/temp.linux-x86_64-cpython-311/layer3/Seeker.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer3/ExecutivePython.cpp -o build/temp.linux-x86_64-cpython-311/layer3/ExecutivePython.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer3/Seeker.cpp: In function ‘void SeekerRefresh(PyMOLGlobals*, std::vector<CSeqRow>&)’:
layer3/Seeker.cpp:485:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
  485 |   for(int b = 0; b < nRow; b++) {
      |                  ~~^~~~~~
layer3/Seeker.cpp: In function ‘void SeekerUpdate(PyMOLGlobals*)’:
layer3/Seeker.cpp:1150:23: warning: comparison of integer expressions of different signedness: ‘ov_size’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
 1150 |           if(row->len < min_pad) {
      |              ~~~~~~~~~^~~~~~~~~
layer3/Seeker.cpp:1186:23: warning: comparison of integer expressions of different signedness: ‘ov_size’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
 1186 |           if(row->len < min_pad) {
      |              ~~~~~~~~~^~~~~~~~~
layer3/Seeker.cpp: In lambda function:
layer3/Seeker.cpp:1248:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
 1248 |             for(int i = 0; i < str_size; i++){
      |                            ~~^~~~~~~~~~
layer3/Seeker.cpp: In function ‘void SeekerUpdate(PyMOLGlobals*)’:
layer3/Seeker.cpp:1930:27: warning: comparison of integer expressions of different signedness: ‘ov_size’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
 1930 |           if(row->ext_len < stop)
      |              ~~~~~~~~~~~~~^~~~~~
In file included from layer0/vla.h:7,
                 from layer1/Symmetry.h:26,
                 from layer1/PyMOLObject.h:27,
                 from layer1/Seq.h:21,
                 from layer3/Seeker.cpp:26:
layer3/Seeker.cpp: In function ‘void SeekerFree(PyMOLGlobals*)’:
layer0/MemoryDebug.h:86:32: warning: deleting object of polymorphic class type ‘CSeeker’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
   86 | #define DeleteP(ptr) {if(ptr) {delete ptr;ptr=NULL;}}
layer3/Seeker.cpp:1964:3: note: in expansion of macro ‘DeleteP’
 1964 |   DeleteP(G->Seeker);
      |   ^~~~~~~
layer3/ExecutivePython.cpp: In function ‘pymol::Result<> ExecutiveSetRawAlignment(PyMOLGlobals*, pymol::zstring_view, PyObject*, pymol::zstring_view, int, int)’:
layer3/ExecutivePython.cpp:171:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘long int’ [-Wsign-compare]
  171 |   for(size_t c = 0; c < n_cols; ++c) {
      |                     ~~^~~~~~~~
layer3/ExecutivePython.cpp:180:25: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘long int’ [-Wsign-compare]
  180 |     for(size_t i = 0; i < n_idx; ++i) {
      |                       ~~^~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer3/MaeExportHelpers.cpp -o build/temp.linux-x86_64-cpython-311/layer3/MaeExportHelpers.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer3/Selector.cpp -o build/temp.linux-x86_64-cpython-311/layer3/Selector.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer3/Selector.cpp: In member function ‘virtual bool SelectorAtomIterator::next()’:
layer3/Selector.cpp:185:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  185 |   if ((++a) >= selector->Table.size())
      |       ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘bool SelectorIsSelectionDiscrete(PyMOLGlobals*, SelectorID_t, bool)’:
layer3/Selector.cpp:1028:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1028 |   for(int a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                             ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘int SelectorClassifyAtoms(PyMOLGlobals*, int, int, ObjectMolecule*)’:
layer3/Selector.cpp:1082:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1082 |   while(a < I->Table.size()) {
      |         ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:1106:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1106 |       while(a1 < I->Table.size()) {
      |             ~~~^~~~~~~~~~~~~~~~~
In file included from layer2/AtomInfo.h:23,
                 from layer3/MaeExportHelpers.h:11,
                 from layer3/MaeExportHelpers.cpp:11:
In function ‘SettingUniqueGetTypedValuePtr(PyMOLGlobals*, int, int, int, bool*)’,
    inlined from ‘SettingUniqueGetIfDefined<bool>(PyMOLGlobals*, int, int, bool*)bool’ at layer1/Setting.h:447:39,
    inlined from ‘AtomSettingGetIfDefined<bool, AtomInfoType const>(PyMOLGlobals*, AtomInfoType const*, int, bool*)bool’ at layer2/AtomInfo.h:496:33,
    inlined from ‘AtomSettingGetWD<bool, AtomInfoType const>(PyMOLGlobals*, AtomInfoType const*, int, bool)bool’ at layer2/AtomInfo.h:506:36,
    inlined from ‘SettingGet<bool>(PyMOLGlobals*, SeleCoordIterator const&, int)bool’ at layer3/MaeExportHelpers.cpp:24:26,
    inlined from ‘MaeExportGetAtomStyle(PyMOLGlobals*, SeleCoordIterator const&)’ at layer3/MaeExportHelpers.cpp:73:26:
layer3/Selector.cpp: In function ‘const char* SelectorGetNameFromIndex(PyMOLGlobals*, SelectorID_t)’:
layer3/Selector.cpp:1519:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<SelectionInfoRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1519 |   for(int a = 1; a < I->Info.size(); a++) {
      |                  ~~^~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘int SelectorAssignSS(PyMOLGlobals*, int, int, int, int, ObjectMolecule*, int)’:
layer3/Selector.cpp:1653:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1653 |       for(a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                             ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:1680:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1680 |             while(a1 < I->Table.size()) {
      |                   ~~~^~~~~~~~~~~~~~~~~
layer1/Setting.h:436:11: warning: ‘out’ may be used uninitialized [-Wmaybe-uninitialized]
  436 |   int i = *out;
      |           ^~~~
layer2/AtomInfo.h: In function ‘MaeExportGetAtomStyle(PyMOLGlobals*, SeleCoordIterator const&)’:
layer3/Selector.cpp:1874:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1874 |         for(a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                               ~~^~~~~~~~~~~~~~~~~
layer2/AtomInfo.h:505:5: note: ‘out’ was declared here
  505 |   V out;
      |     ^~~
layer3/Selector.cpp: In function ‘PyObject* SelectorColorectionGet(PyMOLGlobals*, const char*)’:
layer3/Selector.cpp:2687:18: warning: comparison of integer expressions of different signedness: ‘ov_size’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
 2687 |     for(b = 0; b < n_used; b++) {
      |                ~~^~~~~~~~
layer3/Selector.cpp:2703:16: warning: comparison of integer expressions of different signedness: ‘ov_size’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
 2703 |   for(a = 0; a < n_used; a++) {
      |              ~~^~~~~~~~
layer3/Selector.cpp:2715:18: warning: comparison of integer expressions of different signedness: ‘ov_size’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
 2715 |     for(b = 0; b < n_used; b++) {
      |                ~~^~~~~~~~
layer3/Selector.cpp: In function ‘int SelectorColorectionApply(PyMOLGlobals*, PyObject*, const char*)’:
layer3/Selector.cpp:2763:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘ov_size’ {aka ‘long unsigned int’} [-Wsign-compare]
 2763 |     for(b = 0; b < n_used; b++) {       /* update selection indices */
      |                ~~^~~~~~~~
layer3/Selector.cpp:2768:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 2768 |     for(a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                           ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:2772:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘ov_size’ {aka ‘long unsigned int’} [-Wsign-compare]
 2772 |       for(b = 0; b < n_used; b++) {
      |                  ~~^~~~~~~~
layer3/Selector.cpp: In function ‘PyObject* SelectorSecretsAsPyList(PyMOLGlobals*)’:
layer3/Selector.cpp:2873:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<SelectionInfoRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 2873 |   for(int a = 0; a < I->Info.size(); a++) {
      |                  ~~^~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘PyObject* SelectorAsPyList(PyMOLGlobals*, SelectorID_t)’:
layer3/Selector.cpp:2952:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 2952 |   for(a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                         ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘int SelectorCountStates(PyMOLGlobals*, int)’:
layer3/Selector.cpp:3446:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 3446 |   for(a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                         ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘int SelectorCheckIntersection(PyMOLGlobals*, int, int)’:
layer3/Selector.cpp:3470:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 3470 |   for(int a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                             ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘int SelectorCountAtoms(PyMOLGlobals*, int, int)’:
layer3/Selector.cpp:3488:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 3488 |   for(int a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                             ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘void SelectorSetDeleteFlagOnSelectionInObject(PyMOLGlobals*, int, ObjectMolecule*, signed char)’:
layer3/Selector.cpp:3503:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 3503 |   for(int a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                             ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘int* SelectorGetIndexVLAImpl(PyMOLGlobals*, CSelector*, SelectorID_t)’:
layer3/Selector.cpp:3589:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 3589 |   for(a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                         ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘void SelectorLogSele(PyMOLGlobals*, const char*)’:
layer3/Selector.cpp:3648:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 3648 |       for(a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                             ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘ObjectMolecule* SelectorGetSingleObjectMolecule(PyMOLGlobals*, SelectorID_t)’:
layer3/Selector.cpp:3813:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 3813 |   for (a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                          ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘ObjectMolecule* SelectorGetFirstObjectMolecule(PyMOLGlobals*, SelectorID_t)’:
layer3/Selector.cpp:3843:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 3843 |   for (a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                          ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘ObjectMolecule** SelectorGetObjectMoleculeVLA(PyMOLGlobals*, SelectorID_t)’:
layer3/Selector.cpp:3867:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 3867 |   for(a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                         ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘int SelectorSubdivide(PyMOLGlobals*, const char*, SelectorID_t, SelectorID_t, SelectorID_t, SelectorID_t, const char*, const char*, int*)’:
layer3/Selector.cpp:4266:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 4266 |       for(a = 0; a < I->Table.size(); a++)
      |                  ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘int SelectorGetSeleNCSet(PyMOLGlobals*, SelectorID_t)’:
layer3/Selector.cpp:4570:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 4570 |     for(a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                           ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘int SelectorGetArrayNCSet(PyMOLGlobals*, const sele_array_t&, int)’:
layer3/Selector.cpp:4600:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 4600 |   for(a = start; a < I->Table.size(); a++) {
      |                  ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘int SelectorMapMaskVDW(PyMOLGlobals*, int, ObjectMapState*, float, int)’:
layer3/Selector.cpp:4761:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 4761 |   for(a = 0; a < I->Table.size(); a++) {
      |              ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘int SelectorMapGaussian(PyMOLGlobals*, int, ObjectMapState*, float, int, int, int, int, float)’:
layer3/Selector.cpp:5121:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 5121 |   for(a = 0; a < I->Table.size(); a++) {
      |              ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:5165:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 5165 |   for(a = 0; a < I->Table.size(); a++) {
      |              ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘int SelectorMapCoulomb(PyMOLGlobals*, int, ObjectMapState*, float, int, int, int, float)’:
layer3/Selector.cpp:5373:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 5373 |   for(a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                         ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘int SelectorCreateObjectMolecule(PyMOLGlobals*, SelectorID_t, const char*, int, int, int, int, int, int, int)’:
layer3/Selector.cpp:6062:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 6062 |   if(ob)
      |   ^~
layer3/Selector.cpp:6066:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 6066 |     SelectorUpdateTable(G, source, -1);
      |     ^~~~~~~~~~~~~~~~~~~
layer3/Selector.cpp:6077:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 6077 |       for(a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                             ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In lambda function:
layer3/Selector.cpp:6103:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 6103 |   for(a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                         ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:6133:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMolecule*>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 6133 |   for(a = cNDummyModels; a < I->Obj.size(); a++) {  /* find bonds wholly contained in the selection */
      |                          ~~^~~~~~~~~~~~~~~
layer3/Selector.cpp:6159:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 6159 |     for(a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                           ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:6200:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 6200 |     for(a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                           ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:6224:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 6224 |       for(a = cNDummyAtoms; a < I->Table.size(); a++)  /* any selected atoms in this state? */
      |                             ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘int SelectorEmbedSelection(PyMOLGlobals*, const int*, pymol::zstring_view, ObjectMolecule*, int, int)’:
layer3/Selector.cpp:6660:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 6660 |   for(a = start; a < I->Table.size(); a++) {
      |                  ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘sele_array_t SelectorSelectFromTagDict(PyMOLGlobals*, const std::unordered_map<int, int>&)’:
layer3/Selector.cpp:6755:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 6755 |       for(int a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                                 ~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/cassert:44,
                 from layer0/Field.h:24,
                 from layer0/Isosurf.h:24,
                 from layer2/ObjectMap.h:25,
                 from layer3/Selector.h:27,
                 from layer3/Selector.cpp:39:
layer3/Selector.cpp: In function ‘void SelectorUpdateTableSingleObject(PyMOLGlobals*, ObjectMolecule*, int, bool)’:
layer3/Selector.cpp:6997:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 6997 |   assert(c == I->Table.size());
      |          ~~^~~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘sele_array_t SelectorGetSeleArrayForAtomIndices(CSelector*, ObjectMolecule*, const int*, int, bool)’:
layer3/Selector.cpp:7010:26: warning: comparison of integer expressions of different signedness: ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
 7010 |   assert(I->Table.size() == cNDummyAtoms + obj->NAtom);
      |          ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘int SelectorModulate1(PyMOLGlobals*, EvalElem*, int)’:
layer3/Selector.cpp:7293:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 7293 |           for (a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                                  ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7316:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 7316 |                   for(a = 0; ok && a < I->Table.size(); a++) {
      |                                    ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7379:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 7379 |       for(a = 0; a < I->Table.size(); a++) {
      |                  ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7393:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 7393 |           for(a = 0; a < I->Table.size(); a++) {
      |                      ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7416:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 7416 |                   for(a = 0; ok && a < I->Table.size(); a++) {
      |                                    ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7457:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 7457 |     for(a = cNDummyAtoms; a < I->Table.size(); a++)
      |                           ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘int SelectorSelect0(PyMOLGlobals*, EvalElem*)’:
layer3/Selector.cpp:7490:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 7490 |       for(a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                             ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7501:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 7501 |       for(a = cNDummyAtoms; a < I->Table.size(); a++)
      |                             ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7506:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 7506 |       for(a = cNDummyAtoms; a < I->Table.size(); a++)
      |                             ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7513:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 7513 |     for(a = cNDummyAtoms; a < I->Table.size(); a++)
      |                           ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7517:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 7517 |     for(a = cNDummyAtoms; a < I->Table.size(); a++)
      |                           ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7521:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 7521 |     for(a = cNDummyAtoms; a < I->Table.size(); a++)
      |                           ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7525:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 7525 |     for(a = cNDummyAtoms; a < I->Table.size(); a++)
      |                           ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7529:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 7529 |     for(a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                           ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7538:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 7538 |       for(a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                             ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7555:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 7555 |     for(a = cNDummyAtoms; a < I->Table.size(); a++)
      |                           ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7560:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 7560 |     for(a = cNDummyAtoms; a < I->Table.size(); a++)
      |                           ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7565:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 7565 |     for(a = cNDummyAtoms; a < I->Table.size(); a++)
      |                           ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7570:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 7570 |     for(a = cNDummyAtoms; a < I->Table.size(); a++)
      |                           ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7575:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 7575 |     for(a = cNDummyAtoms; a < I->Table.size(); a++)
      |                           ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7580:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 7580 |     for(a = cNDummyAtoms; a < I->Table.size(); a++)
      |                           ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7585:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 7585 |     for(a = cNDummyAtoms; a < I->Table.size(); a++)
      |                           ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7589:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 7589 |     for(a = cNDummyAtoms; a < I->Table.size(); a++)
      |                           ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7593:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 7593 |     for(a = cNDummyAtoms; a < I->Table.size(); a++)
      |                           ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7598:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 7598 |     for(a = cNDummyAtoms; a < I->Table.size(); a++)
      |                           ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7603:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 7603 |     for(a = cNDummyAtoms; a < I->Table.size(); a++)
      |                           ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7610:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 7610 |     for(a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                           ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7626:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 7626 |     for(a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                           ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7632:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 7632 |     for(a = 0; a < I->Table.size(); a++) {
      |                ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7641:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 7641 |     for(a = 0; a < I->Table.size(); a++) {
      |                ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7653:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 7653 |       for(a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                             ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7673:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 7673 |     for(a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                           ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘pymol::Result<> SelectorSelect1(PyMOLGlobals*, EvalElem*, int)’:
layer3/Selector.cpp:8378:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMolecule*>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 8378 |           for(a = cNDummyModels; a < I->Obj.size(); a++)
      |                                  ~~^~~~~~~~~~~~~~~
layer3/Selector.cpp:8388:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMolecule*>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 8388 |             else if(model > I->Obj.size())
      |                     ~~~~~~^~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘int SelectorSelect2(PyMOLGlobals*, EvalElem*, int)’:
layer3/Selector.cpp:8470:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 8470 |       for(a = cNDummyAtoms; a < I->Table.size(); a++)
      |                             ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:8474:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 8474 |         for(a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                               ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:8522:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 8522 |             for(a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                                   ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:8533:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 8533 |             for(a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                                   ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:8544:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 8544 |             for(a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                                   ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:8555:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 8555 |             for(a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                                   ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:8570:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 8570 |             for(a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                                   ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:8581:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 8581 |             for(a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                                   ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:8592:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 8592 |             for(a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                                   ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:8603:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 8603 |             for(a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                                   ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:8618:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 8618 |             for(a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                                   ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:8629:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 8629 |             for(a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                                   ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:8640:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 8640 |             for(a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                                   ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:8651:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 8651 |             for(a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                                   ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘int SelectorLogic1(PyMOLGlobals*, EvalElem*, int)’:
layer3/Selector.cpp:9128:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 9128 |           for(a = 0; a < I->Table.size(); a++) {
      |                      ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:9157:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 9157 |                   for(a = 0; a < I->Table.size(); a++) {
      |                              ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘int SelectorOperator22(PyMOLGlobals*, EvalElem*, int)’:
layer3/Selector.cpp:9416:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare]
 9416 |           for(a = 0; a < table_size; a++) {
      |                      ~~^~~~~~~~~~~~
layer3/Selector.cpp:9438:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 9438 |                   for(a = 0; a < I->Table.size(); a++) {
      |                              ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:9468:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 9468 |         for(a = 0; a < I->Table.size(); a++) {
      |                    ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:9473:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 9473 |       for(a = cNDummyAtoms; a < I->Table.size(); a++)
      |                             ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘pymol::Result<std::unique_ptr<int [], std::default_delete<int []> > > SelectorEvaluate(PyMOLGlobals*, std::vector<std::__cxx11::basic_string<char> >&, int, int)’:
layer3/Selector.cpp:9622:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 9622 |   while(ok && c < word.size()) {
      |               ~~^~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘DistSet* SelectorGetDistSet(PyMOLGlobals*, DistSet*, int, int, int, int, int, float, float*)’:
layer3/Selector.cpp:10213:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
10213 |     for(a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                           ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘DistSet* SelectorGetAngleSet(PyMOLGlobals*, DistSet*, int, int, int, int, int, int, int, float*, int*)’:
layer3/Selector.cpp:10495:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
10495 |     for(a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                           ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:10519:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
10519 |       for(a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                             ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘DistSet* SelectorGetDihedralSet(PyMOLGlobals*, DistSet*, int, int, int, int, int, int, int, int, int, float*, int*)’:
layer3/Selector.cpp:10724:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
10724 |     for(a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                           ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:10801:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
10801 |         for(a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                               ~~^~~~~~~~~~~~~~~~~
layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = float; SizeTs = {int, int, int, int}]’:
layer3/Selector.cpp:4800:18:   required from here
layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare]
  100 |     assert(sizeof...(pos) <= n_dim());
      |            ~~~~~~~~~~~~~~~^~~~~~~~~~
layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = float; SizeTs = {int, int, int}]’:
layer3/Selector.cpp:5309:20:   required from here
layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare]
layer3/Selector.cpp: In function ‘SelectorAssignSS(PyMOLGlobals*, int, int, int, int, ObjectMolecule*, int)’:
layer3/Selector.cpp:1722:70: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 207 [-Wformat-truncation=]
 1722 |                     " AssignSS-Warning: Ignoring incomplete residue /%s/%s/%s/%d%c ...\n",
      |                                                                      ^~
In file included from /usr/include/stdio.h:906,
                 from /usr/include/c++/12/cstdio:42,
                 from /usr/include/c++/12/ext/string_conversions.h:43,
                 from /usr/include/c++/12/bits/basic_string.h:3960,
                 from /usr/include/c++/12/string:53,
                 from layer3/Selector.cpp:20:
In function ‘snprintf’,
    inlined from ‘SelectorAssignSS(PyMOLGlobals*, int, int, int, int, ObjectMolecule*, int)’ at layer3/Selector.cpp:1721:19:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 59 and 324 bytes into a destination of size 255
   54 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   55 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   56 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer3/SelectorTmp.cpp -o build/temp.linux-x86_64-cpython-311/layer3/SelectorTmp.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer3/SpecRec.cpp -o build/temp.linux-x86_64-cpython-311/layer3/SpecRec.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer3/SpecRecSpecial.cpp -o build/temp.linux-x86_64-cpython-311/layer3/SpecRecSpecial.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer4/Cmd.cpp -o build/temp.linux-x86_64-cpython-311/layer4/Cmd.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer4/Cmd.cpp: In function ‘PyObject* CmdPushUndo(PyObject*, PyObject*)’:
layer4/Cmd.cpp:2216:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2216 |     if(ok)
      |     ^~
layer4/Cmd.cpp:2218:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2218 |       if(s0[0])
      |       ^~
layer4/Cmd.cpp: In function ‘PyObject* CmdGetMinMax(PyObject*, PyObject*)’:
layer4/Cmd.cpp:4469:7: warning: variable ‘ok’ set but not used [-Wunused-but-set-variable]
 4469 |   int ok = false;
      |       ^~
In file included from layer4/Cmd.cpp:77:
layer1/PConv.h: In instantiation of ‘PyObject* PConvToPyObject(const std::array<_Tp, _Nm>&) [with T = float; long unsigned int N = 3; PyObject = _object]’:
layer4/Cmd.cpp:380:27:   required from ‘PyObject* APIResult(PyMOLGlobals*, pymol::Result<T>&) [with T = std::array<float, 3>; PyObject = _object]’
layer4/Cmd.cpp:4034:19:   required from here
layer1/PConv.h:259:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
  259 |   for (int i = 0; i < N; ++i) {
      |                   ~~^~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer4/Menu.cpp -o build/temp.linux-x86_64-cpython-311/layer4/Menu.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer4/PopUp.cpp -o build/temp.linux-x86_64-cpython-311/layer4/PopUp.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In file included from layer0/OOMac.h:22,
                 from layer4/PopUp.cpp:23:
layer4/PopUp.cpp: In function ‘void PopUpFree(Block*)’:
layer0/MemoryDebug.h:86:32: warning: deleting object of polymorphic class type ‘CPopUp’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
   86 | #define DeleteP(ptr) {if(ptr) {delete ptr;ptr=NULL;}}
layer4/PopUp.cpp:401:3: note: in expansion of macro ‘DeleteP’
  401 |   DeleteP(I);
      |   ^~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer5/PyMOL.cpp -o build/temp.linux-x86_64-cpython-311/layer5/PyMOL.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer5/PyMOL.cpp: In function ‘PyMOLreturn_status Loader(CPyMOL*, const char*, const char*, int, const char*, const char*, int, int, int, int, int, int)’:
layer5/PyMOL.cpp:1546:27: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘long unsigned int’ [-Wsign-compare]
 1546 |         if((stop - start) >= sizeof(WordType))
      |            ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
In file included from layer5/PyMOL.cpp:23:
layer5/PyMOL.cpp: In function ‘void PyMOL_Stop(CPyMOL*)’:
layer0/MemoryDebug.h:86:32: warning: deleting object of polymorphic class type ‘CMovie’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
   86 | #define DeleteP(ptr) {if(ptr) {delete ptr;ptr=NULL;}}
layer5/PyMOL.cpp:1987:3: note: in expansion of macro ‘DeleteP’
 1987 |   DeleteP(G->Movie);
      |   ^~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer5/TestPyMOL.cpp -o build/temp.linux-x86_64-cpython-311/layer5/TestPyMOL.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer5/main.cpp -o build/temp.linux-x86_64-cpython-311/layer5/main.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD ov/src/OVContext.cpp -o build/temp.linux-x86_64-cpython-311/ov/src/OVContext.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
ov/src/OVContext.cpp: In function ‘void OVContext_Del(OVContext*)’:
ov/src/OVContext.cpp:21:13: warning: variable ‘heap’ set but not used [-Wunused-but-set-variable]
   21 |     OVHeap *heap = I->heap;
      |             ^~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD ov/src/OVHeap.cpp -o build/temp.linux-x86_64-cpython-311/ov/src/OVHeap.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD ov/src/OVHeapArray.cpp -o build/temp.linux-x86_64-cpython-311/ov/src/OVHeapArray.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD ov/src/OVLexicon.cpp -o build/temp.linux-x86_64-cpython-311/ov/src/OVLexicon.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD ov/src/OVOneToAny.cpp -o build/temp.linux-x86_64-cpython-311/ov/src/OVOneToAny.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD ov/src/OVOneToOne.cpp -o build/temp.linux-x86_64-cpython-311/ov/src/OVOneToOne.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD ov/src/OVRandom.cpp -o build/temp.linux-x86_64-cpython-311/ov/src/OVRandom.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD ov/src/ov_utility.cpp -o build/temp.linux-x86_64-cpython-311/ov/src/ov_utility.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection build/temp.linux-x86_64-cpython-311/build/generated/ShaderText.o build/temp.linux-x86_64-cpython-311/contrib/mmtf-c/mmtf_parser.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/avsplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/binposplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/carplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/corplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/crdplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/dxplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/edmplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/grdplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/gridplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/hash.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/inthash.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/jsplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/mapplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/offplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/parmplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/phiplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/pltplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/plyplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/psfplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/situsplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/stlplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.o build/temp.linux-x86_64-cpython-311/layer0/Block.o build/temp.linux-x86_64-cpython-311/layer0/CarveHelper.o build/temp.linux-x86_64-cpython-311/layer0/ContourSurf.o build/temp.linux-x86_64-cpython-311/layer0/Crystal.o build/temp.linux-x86_64-cpython-311/layer0/Deferred.o build/temp.linux-x86_64-cpython-311/layer0/Err.o build/temp.linux-x86_64-cpython-311/layer0/Feedback.o build/temp.linux-x86_64-cpython-311/layer0/Field.o build/temp.linux-x86_64-cpython-311/layer0/File.o build/temp.linux-x86_64-cpython-311/layer0/GenericBuffer.o build/temp.linux-x86_64-cpython-311/layer0/GraphicsUtil.o build/temp.linux-x86_64-cpython-311/layer0/Isosurf.o build/temp.linux-x86_64-cpython-311/layer0/Map.o build/temp.linux-x86_64-cpython-311/layer0/Match.o build/temp.linux-x86_64-cpython-311/layer0/Matrix.o build/temp.linux-x86_64-cpython-311/layer0/MemoryDebug.o build/temp.linux-x86_64-cpython-311/layer0/MemoryUsage.o build/temp.linux-x86_64-cpython-311/layer0/MyPNG.o build/temp.linux-x86_64-cpython-311/layer0/Parse.o build/temp.linux-x86_64-cpython-311/layer0/Pixmap.o build/temp.linux-x86_64-cpython-311/layer0/PostProcess.o build/temp.linux-x86_64-cpython-311/layer0/ShaderMgr.o build/temp.linux-x86_64-cpython-311/layer0/ShaderPrg.o build/temp.linux-x86_64-cpython-311/layer0/Sphere.o build/temp.linux-x86_64-cpython-311/layer0/Tetsurf.o build/temp.linux-x86_64-cpython-311/layer0/Texture.o build/temp.linux-x86_64-cpython-311/layer0/Tracker.o build/temp.linux-x86_64-cpython-311/layer0/Triangle.o build/temp.linux-x86_64-cpython-311/layer0/Util.o build/temp.linux-x86_64-cpython-311/layer0/Util2.o build/temp.linux-x86_64-cpython-311/layer0/Vector.o build/temp.linux-x86_64-cpython-311/layer0/Word.o build/temp.linux-x86_64-cpython-311/layer0/ccealignmodule.o build/temp.linux-x86_64-cpython-311/layer0/marching_cubes.o build/temp.linux-x86_64-cpython-311/layer0/os_gl.o build/temp.linux-x86_64-cpython-311/layer1/Basis.o build/temp.linux-x86_64-cpython-311/layer1/ButMode.o build/temp.linux-x86_64-cpython-311/layer1/CGO.o build/temp.linux-x86_64-cpython-311/layer1/COLLADA.o build/temp.linux-x86_64-cpython-311/layer1/Character.o build/temp.linux-x86_64-cpython-311/layer1/Color.o build/temp.linux-x86_64-cpython-311/layer1/Control.o build/temp.linux-x86_64-cpython-311/layer1/Extrude.o build/temp.linux-x86_64-cpython-311/layer1/Font.o build/temp.linux-x86_64-cpython-311/layer1/FontGLUT.o build/temp.linux-x86_64-cpython-311/layer1/FontGLUT8x13.o build/temp.linux-x86_64-cpython-311/layer1/FontGLUT9x15.o build/temp.linux-x86_64-cpython-311/layer1/FontGLUTHel10.o build/temp.linux-x86_64-cpython-311/layer1/FontGLUTHel12.o build/temp.linux-x86_64-cpython-311/layer1/FontGLUTHel18.o build/temp.linux-x86_64-cpython-311/layer1/FontType.o build/temp.linux-x86_64-cpython-311/layer1/Movie.o build/temp.linux-x86_64-cpython-311/layer1/Ortho.o build/temp.linux-x86_64-cpython-311/layer1/P.o build/temp.linux-x86_64-cpython-311/layer1/PConv.o build/temp.linux-x86_64-cpython-311/layer1/Picking.o build/temp.linux-x86_64-cpython-311/layer1/Pop.o build/temp.linux-x86_64-cpython-311/layer1/PyMOLObject.o build/temp.linux-x86_64-cpython-311/layer1/Ray.o build/temp.linux-x86_64-cpython-311/layer1/Rep.o build/temp.linux-x86_64-cpython-311/layer1/Scene.o build/temp.linux-x86_64-cpython-311/layer1/SceneMouse.o build/temp.linux-x86_64-cpython-311/layer1/ScenePicking.o build/temp.linux-x86_64-cpython-311/layer1/SceneRay.o build/temp.linux-x86_64-cpython-311/layer1/SceneRender.o build/temp.linux-x86_64-cpython-311/layer1/ScrollBar.o build/temp.linux-x86_64-cpython-311/layer1/Seq.o build/temp.linux-x86_64-cpython-311/layer1/Setting.o build/temp.linux-x86_64-cpython-311/layer1/Shaker.o build/temp.linux-x86_64-cpython-311/layer1/SymOp.o build/temp.linux-x86_64-cpython-311/layer1/SymOpPConv.o build/temp.linux-x86_64-cpython-311/layer1/SymOpTools.o build/temp.linux-x86_64-cpython-311/layer1/Symmetry.o build/temp.linux-x86_64-cpython-311/layer1/Text.o build/temp.linux-x86_64-cpython-311/layer1/TypeFace.o build/temp.linux-x86_64-cpython-311/layer1/View.o build/temp.linux-x86_64-cpython-311/layer1/Wizard.o build/temp.linux-x86_64-cpython-311/layer2/AssemblyHelpers.o build/temp.linux-x86_64-cpython-311/layer2/AtomInfo.o build/temp.linux-x86_64-cpython-311/layer2/AtomInfoHistory.o build/temp.linux-x86_64-cpython-311/layer2/BondTypeHistory.o build/temp.linux-x86_64-cpython-311/layer2/CifFile.o build/temp.linux-x86_64-cpython-311/layer2/CifMoleculeReader.o build/temp.linux-x86_64-cpython-311/layer2/CoordSet.o build/temp.linux-x86_64-cpython-311/layer2/DistSet.o build/temp.linux-x86_64-cpython-311/layer2/GadgetSet.o build/temp.linux-x86_64-cpython-311/layer2/HydrogenAdder.o build/temp.linux-x86_64-cpython-311/layer2/MmodTyping.o build/temp.linux-x86_64-cpython-311/layer2/MmtfMoleculeReader.o build/temp.linux-x86_64-cpython-311/layer2/Mol2Typing.o build/temp.linux-x86_64-cpython-311/layer2/MolV3000.o build/temp.linux-x86_64-cpython-311/layer2/ObjectAlignment.o build/temp.linux-x86_64-cpython-311/layer2/ObjectCGO.o build/temp.linux-x86_64-cpython-311/layer2/ObjectCallback.o build/temp.linux-x86_64-cpython-311/layer2/ObjectDist.o build/temp.linux-x86_64-cpython-311/layer2/ObjectGadget.o build/temp.linux-x86_64-cpython-311/layer2/ObjectGadgetRamp.o build/temp.linux-x86_64-cpython-311/layer2/ObjectGroup.o build/temp.linux-x86_64-cpython-311/layer2/ObjectMap.o build/temp.linux-x86_64-cpython-311/layer2/ObjectMesh.o build/temp.linux-x86_64-cpython-311/layer2/ObjectMolecule.o build/temp.linux-x86_64-cpython-311/layer2/ObjectMolecule2.o build/temp.linux-x86_64-cpython-311/layer2/ObjectMolecule3.o build/temp.linux-x86_64-cpython-311/layer2/ObjectSlice.o build/temp.linux-x86_64-cpython-311/layer2/ObjectSurface.o build/temp.linux-x86_64-cpython-311/layer2/ObjectVolume.o build/temp.linux-x86_64-cpython-311/layer2/RepAngle.o build/temp.linux-x86_64-cpython-311/layer2/RepCartoon.o build/temp.linux-x86_64-cpython-311/layer2/RepCylBond.o build/temp.linux-x86_64-cpython-311/layer2/RepDihedral.o build/temp.linux-x86_64-cpython-311/layer2/RepDistDash.o build/temp.linux-x86_64-cpython-311/layer2/RepDistLabel.o build/temp.linux-x86_64-cpython-311/layer2/RepDot.o build/temp.linux-x86_64-cpython-311/layer2/RepEllipsoid.o build/temp.linux-x86_64-cpython-311/layer2/RepLabel.o build/temp.linux-x86_64-cpython-311/layer2/RepMesh.o build/temp.linux-x86_64-cpython-311/layer2/RepNonbonded.o build/temp.linux-x86_64-cpython-311/layer2/RepNonbondedSphere.o build/temp.linux-x86_64-cpython-311/layer2/RepRibbon.o build/temp.linux-x86_64-cpython-311/layer2/RepSphere.o build/temp.linux-x86_64-cpython-311/layer2/RepSphereGenerate.o build/temp.linux-x86_64-cpython-311/layer2/RepSphereImmediate.o build/temp.linux-x86_64-cpython-311/layer2/RepSurface.o build/temp.linux-x86_64-cpython-311/layer2/RepWireBond.o build/temp.linux-x86_64-cpython-311/layer2/Sculpt.o build/temp.linux-x86_64-cpython-311/layer2/SculptCache.o build/temp.linux-x86_64-cpython-311/layer2/SideChainHelper.o build/temp.linux-x86_64-cpython-311/layer2/VFont.o build/temp.linux-x86_64-cpython-311/layer3/AtomIterators.o build/temp.linux-x86_64-cpython-311/layer3/CifDataValueFormatter.o build/temp.linux-x86_64-cpython-311/layer3/Editor.o build/temp.linux-x86_64-cpython-311/layer3/Executive.o build/temp.linux-x86_64-cpython-311/layer3/ExecutivePython.o build/temp.linux-x86_64-cpython-311/layer3/MaeExportHelpers.o build/temp.linux-x86_64-cpython-311/layer3/MoleculeExporter.o build/temp.linux-x86_64-cpython-311/layer3/MovieScene.o build/temp.linux-x86_64-cpython-311/layer3/PlugIOManager.o build/temp.linux-x86_64-cpython-311/layer3/RingFinder.o build/temp.linux-x86_64-cpython-311/layer3/Seeker.o build/temp.linux-x86_64-cpython-311/layer3/Selector.o build/temp.linux-x86_64-cpython-311/layer3/SelectorTmp.o build/temp.linux-x86_64-cpython-311/layer3/SpecRec.o build/temp.linux-x86_64-cpython-311/layer3/SpecRecSpecial.o build/temp.linux-x86_64-cpython-311/layer4/Cmd.o build/temp.linux-x86_64-cpython-311/layer4/Menu.o build/temp.linux-x86_64-cpython-311/layer4/PopUp.o build/temp.linux-x86_64-cpython-311/layer5/PyMOL.o build/temp.linux-x86_64-cpython-311/layer5/TestPyMOL.o build/temp.linux-x86_64-cpython-311/layer5/main.o build/temp.linux-x86_64-cpython-311/ov/src/OVContext.o build/temp.linux-x86_64-cpython-311/ov/src/OVHeap.o build/temp.linux-x86_64-cpython-311/ov/src/OVHeapArray.o build/temp.linux-x86_64-cpython-311/ov/src/OVLexicon.o build/temp.linux-x86_64-cpython-311/ov/src/OVOneToAny.o build/temp.linux-x86_64-cpython-311/ov/src/OVOneToOne.o build/temp.linux-x86_64-cpython-311/ov/src/OVRandom.o build/temp.linux-x86_64-cpython-311/ov/src/ov_utility.o -L/usr/lib64 -L/usr/lib -L/usr/lib64 -lpng -lfreetype -lxml2 -lGL -lGLEW -lnetcdf -o build/lib.linux-x86_64-cpython-311/pymol/_cmd.cpython-311-x86_64-linux-gnu.so -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:62:16: warning: type ‘struct parm’ violates the C++ One Definition Rule [-Wodr]
   62 | typedef struct parm {
      |                ^
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:59:16: note: a different type is defined in another translation unit
   59 | typedef struct parm {
      |                ^
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:63:8: note: the first difference of corresponding definitions is field ‘title’
   63 |   char title[85];
      |        ^
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:60:17: note: a field with different name is defined in another translation unit
   60 |         char    ititl[81];
      |                 ^
contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp:33:3: warning: type ‘struct parmdata’ violates the C++ One Definition Rule [-Wodr]
   33 | } parmdata;
      |   ^
contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp:32:3: note: a different type is defined in another translation unit
   32 | } parmdata;
      |   ^
contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp:28:15: note: the first difference of corresponding definitions is field ‘prm’
   28 |   parmstruct *prm;
      |               ^
contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp:28:13: note: a field with different name is defined in another translation unit
   28 |   ReadPARM *rp;
      |             ^
layer0/Isosurf.cpp:47:16: warning: type ‘struct PointType’ violates the C++ One Definition Rule [-Wodr]
   47 | typedef struct PointType {
      |                ^
layer0/Tetsurf.cpp:46:3: note: a different type is defined in another translation unit
   46 | } PointType;
      |   ^
layer0/Isosurf.cpp:49:7: note: the first difference of corresponding definitions is field ‘NLink’
   49 |   int NLink;
      |       ^
layer0/Tetsurf.cpp:43:9: note: a field with different name is defined in another translation unit
   43 |   float Normal[3];
      |         ^
ov/src/OVOneToAny.cpp:15:3: warning: type ‘struct up_element’ violates the C++ One Definition Rule [-Wodr]
   15 | } up_element;
      |   ^
ov/src/OVOneToOne.cpp:15:3: note: a different type is defined in another translation unit
   15 | } up_element;
      |   ^
ov/src/OVOneToOne.cpp:14:25: note: the first difference of corresponding definitions is field ‘reverse_next’
   14 |   ov_size forward_next, reverse_next;
      |                         ^
ov/src/OVOneToOne.cpp:15:3: note: a type with different number of fields is defined in another translation unit
   15 | } up_element;
      |   ^
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function ‘recreate_command_line’:
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1334:11: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=]
 1334 |   line[0] = '\0';
      |           ^
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1333:26: note: destination object of size 0 allocated by ‘malloc’
 1333 |   line = (char *) malloc (sizeof(char) * len);
      |                          ^
layer3/Executive.cpp: In function ‘ExecutiveManageObject’:
layer3/Executive.cpp:14473:11: warning: ‘strcpy’ writing between 1 and 256 bytes into a region of size 0 overflows the destination [-Wstringop-overflow=]
14473 |     strcpy(rec->name, obj->Name);
      |           ^
building 'chempy.champ._champ' extension
creating build/temp.linux-x86_64-cpython-311/contrib/champ
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -Icontrib/champ -I/usr/include/python3.11 -c -MMD contrib/champ/champ.c -o build/temp.linux-x86_64-cpython-311/contrib/champ/champ.o
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -Icontrib/champ -I/usr/include/python3.11 -c -MMD contrib/champ/chiral.c -o build/temp.linux-x86_64-cpython-311/contrib/champ/chiral.o
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -Icontrib/champ -I/usr/include/python3.11 -c -MMD contrib/champ/err2.c -o build/temp.linux-x86_64-cpython-311/contrib/champ/err2.o
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -Icontrib/champ -I/usr/include/python3.11 -c -MMD contrib/champ/feedback2.c -o build/temp.linux-x86_64-cpython-311/contrib/champ/feedback2.o
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -Icontrib/champ -I/usr/include/python3.11 -c -MMD contrib/champ/list.c -o build/temp.linux-x86_64-cpython-311/contrib/champ/list.o
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -Icontrib/champ -I/usr/include/python3.11 -c -MMD contrib/champ/os_memory.c -o build/temp.linux-x86_64-cpython-311/contrib/champ/os_memory.o
contrib/champ/os_memory.c: In function ‘OSMemoryZero’:
contrib/champ/os_memory.c:55:18: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
   55 |   while(count&&(((int)p)&mask)) {
      |                  ^
contrib/champ/os_memory.c: In function ‘OSMemoryHashAdd’:
contrib/champ/os_memory.c:137:8: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
  137 |   hash=(int)rec;
      |        ^
contrib/champ/os_memory.c: In function ‘OSMemoryHashRemove’:
contrib/champ/os_memory.c:150:8: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
  150 |   hash=(int)rec;
      |        ^
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -Icontrib/champ -I/usr/include/python3.11 -c -MMD contrib/champ/sort.c -o build/temp.linux-x86_64-cpython-311/contrib/champ/sort.o
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -Icontrib/champ -I/usr/include/python3.11 -c -MMD contrib/champ/strblock.c -o build/temp.linux-x86_64-cpython-311/contrib/champ/strblock.o
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -Icontrib/champ -I/usr/include/python3.11 -c -MMD contrib/champ/vla.c -o build/temp.linux-x86_64-cpython-311/contrib/champ/vla.o
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -Icontrib/champ -I/usr/include/python3.11 -c -MMD contrib/champ/champ_module.c -o build/temp.linux-x86_64-cpython-311/contrib/champ/champ_module.o
gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection build/temp.linux-x86_64-cpython-311/contrib/champ/champ.o build/temp.linux-x86_64-cpython-311/contrib/champ/champ_module.o build/temp.linux-x86_64-cpython-311/contrib/champ/chiral.o build/temp.linux-x86_64-cpython-311/contrib/champ/err2.o build/temp.linux-x86_64-cpython-311/contrib/champ/feedback2.o build/temp.linux-x86_64-cpython-311/contrib/champ/list.o build/temp.linux-x86_64-cpython-311/contrib/champ/os_memory.o build/temp.linux-x86_64-cpython-311/contrib/champ/sort.o build/temp.linux-x86_64-cpython-311/contrib/champ/strblock.o build/temp.linux-x86_64-cpython-311/contrib/champ/vla.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-311/chempy/champ/_champ.cpython-311-x86_64-linux-gnu.so
Exception ignored in: <function Pool.__del__ at 0x7f3c39160180>
Traceback (most recent call last):
  File "/usr/lib64/python3.11/multiprocessing/pool.py", line 271, in __del__
  File "/usr/lib64/python3.11/multiprocessing/queues.py", line 377, in put
  File "/usr/lib64/python3.11/multiprocessing/connection.py", line 204, in send_bytes
  File "/usr/lib64/python3.11/multiprocessing/connection.py", line 404, in _send_bytes
AttributeError: 'NoneType' object has no attribute 'pack'
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.kLIg6U
+ umask 022
+ cd /builddir/build/BUILD
+ '[' /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64 '!=' / ']'
+ rm -rf /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64
++ dirname /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules'
+ export FCFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes'
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd pymol-open-source-2.5.0
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes'
+ /usr/bin/python3 setup.py install -O1 --skip-build --root /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64 --prefix /usr --use-msgpackc=c++11 --use-openmp=yes --pymol-path=/usr/lib64/python3.11/site-packages/pymol
running install
running install_lib
creating /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr
creating /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64
creating /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11
creating /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages
creating /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy
creating /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/bmin
copying build/lib.linux-x86_64-cpython-311/chempy/bmin/__init__.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/bmin
copying build/lib.linux-x86_64-cpython-311/chempy/bmin/commands.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/bmin
copying build/lib.linux-x86_64-cpython-311/chempy/bmin/realtime.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/bmin
copying build/lib.linux-x86_64-cpython-311/chempy/bmin/state.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/bmin
copying build/lib.linux-x86_64-cpython-311/chempy/bmin/util.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/bmin
creating /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/champ
copying build/lib.linux-x86_64-cpython-311/chempy/champ/_champ.cpython-311-x86_64-linux-gnu.so -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/champ
copying build/lib.linux-x86_64-cpython-311/chempy/champ/__init__.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/champ
copying build/lib.linux-x86_64-cpython-311/chempy/champ/amber99.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/champ
copying build/lib.linux-x86_64-cpython-311/chempy/champ/assign.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/champ
copying build/lib.linux-x86_64-cpython-311/chempy/champ/formal_charges.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/champ
creating /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/fast
copying build/lib.linux-x86_64-cpython-311/chempy/fast/__init__.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/fast
creating /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/fragments
copying build/lib.linux-x86_64-cpython-311/chempy/fragments/__init__.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/fragments
creating /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/mmtf
copying build/lib.linux-x86_64-cpython-311/chempy/mmtf/__init__.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/mmtf
copying build/lib.linux-x86_64-cpython-311/chempy/mmtf/io.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/mmtf
creating /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/tinker
copying build/lib.linux-x86_64-cpython-311/chempy/tinker/__init__.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/tinker
copying build/lib.linux-x86_64-cpython-311/chempy/tinker/amber.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/tinker
copying build/lib.linux-x86_64-cpython-311/chempy/tinker/keyword.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/tinker
copying build/lib.linux-x86_64-cpython-311/chempy/tinker/realtime.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/tinker
copying build/lib.linux-x86_64-cpython-311/chempy/tinker/state.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/tinker
copying build/lib.linux-x86_64-cpython-311/chempy/__init__.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-x86_64-cpython-311/chempy/arc.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-x86_64-cpython-311/chempy/bond_amber.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-x86_64-cpython-311/chempy/bond_mmff.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-x86_64-cpython-311/chempy/bonds.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-x86_64-cpython-311/chempy/brick.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-x86_64-cpython-311/chempy/cc1.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-x86_64-cpython-311/chempy/charge.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-x86_64-cpython-311/chempy/cif.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-x86_64-cpython-311/chempy/cpv.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-x86_64-cpython-311/chempy/dictdb.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-x86_64-cpython-311/chempy/gamess1.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-x86_64-cpython-311/chempy/gms.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-x86_64-cpython-311/chempy/hetatm.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-x86_64-cpython-311/chempy/io.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-x86_64-cpython-311/chempy/lst.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-x86_64-cpython-311/chempy/mae.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-x86_64-cpython-311/chempy/map.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-x86_64-cpython-311/chempy/mass.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-x86_64-cpython-311/chempy/mmd.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-x86_64-cpython-311/chempy/models.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-x86_64-cpython-311/chempy/mol.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-x86_64-cpython-311/chempy/mol2.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-x86_64-cpython-311/chempy/neighbor.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-x86_64-cpython-311/chempy/pdb.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-x86_64-cpython-311/chempy/pkl.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-x86_64-cpython-311/chempy/place.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-x86_64-cpython-311/chempy/protein.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-x86_64-cpython-311/chempy/protein_amber.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-x86_64-cpython-311/chempy/protein_amber99.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-x86_64-cpython-311/chempy/protein_mmff.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-x86_64-cpython-311/chempy/protein_residues.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-x86_64-cpython-311/chempy/sdf.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-x86_64-cpython-311/chempy/solvate.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-x86_64-cpython-311/chempy/water_amber.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-x86_64-cpython-311/chempy/water_residues.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-x86_64-cpython-311/chempy/xyz.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy
creating /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt
creating /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/forms
copying build/lib.linux-x86_64-cpython-311/pmg_qt/forms/askpartial.ui -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/forms
copying build/lib.linux-x86_64-cpython-311/pmg_qt/forms/change_confirm.ui -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/forms
copying build/lib.linux-x86_64-cpython-311/pmg_qt/forms/colors.ui -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/forms
copying build/lib.linux-x86_64-cpython-311/pmg_qt/forms/create_shortcut.ui -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/forms
copying build/lib.linux-x86_64-cpython-311/pmg_qt/forms/fetch.ui -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/forms
copying build/lib.linux-x86_64-cpython-311/pmg_qt/forms/help_shortcut.ui -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/forms
copying build/lib.linux-x86_64-cpython-311/pmg_qt/forms/load_aln.ui -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/forms
copying build/lib.linux-x86_64-cpython-311/pmg_qt/forms/load_mae.ui -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/forms
copying build/lib.linux-x86_64-cpython-311/pmg_qt/forms/load_map.ui -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/forms
copying build/lib.linux-x86_64-cpython-311/pmg_qt/forms/load_mtz.ui -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/forms
copying build/lib.linux-x86_64-cpython-311/pmg_qt/forms/load_traj.ui -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/forms
copying build/lib.linux-x86_64-cpython-311/pmg_qt/forms/movieexport.ui -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/forms
copying build/lib.linux-x86_64-cpython-311/pmg_qt/forms/pluginitem.ui -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/forms
copying build/lib.linux-x86_64-cpython-311/pmg_qt/forms/pluginmanager.ui -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/forms
copying build/lib.linux-x86_64-cpython-311/pmg_qt/forms/png.ui -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/forms
copying build/lib.linux-x86_64-cpython-311/pmg_qt/forms/props.ui -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/forms
copying build/lib.linux-x86_64-cpython-311/pmg_qt/forms/render.ui -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/forms
copying build/lib.linux-x86_64-cpython-311/pmg_qt/forms/save_molecule.ui -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/forms
copying build/lib.linux-x86_64-cpython-311/pmg_qt/forms/save_object.ui -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/forms
copying build/lib.linux-x86_64-cpython-311/pmg_qt/forms/shortcut_menu.ui -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/forms
copying build/lib.linux-x86_64-cpython-311/pmg_qt/forms/__init__.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/forms
creating /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/syntax
copying build/lib.linux-x86_64-cpython-311/pmg_qt/syntax/__init__.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/syntax
copying build/lib.linux-x86_64-cpython-311/pmg_qt/syntax/pml.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/syntax
copying build/lib.linux-x86_64-cpython-311/pmg_qt/syntax/pmlparser.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/syntax
copying build/lib.linux-x86_64-cpython-311/pmg_qt/syntax/python.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/syntax
copying build/lib.linux-x86_64-cpython-311/pmg_qt/TextEditor.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt
copying build/lib.linux-x86_64-cpython-311/pmg_qt/__init__.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt
copying build/lib.linux-x86_64-cpython-311/pmg_qt/advanced_settings_gui.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt
copying build/lib.linux-x86_64-cpython-311/pmg_qt/builder.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt
copying build/lib.linux-x86_64-cpython-311/pmg_qt/file_dialogs.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt
copying build/lib.linux-x86_64-cpython-311/pmg_qt/keymapping.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt
copying build/lib.linux-x86_64-cpython-311/pmg_qt/mimic_pmg_tk.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt
copying build/lib.linux-x86_64-cpython-311/pmg_qt/mimic_tk.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt
copying build/lib.linux-x86_64-cpython-311/pmg_qt/properties_dialog.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt
copying build/lib.linux-x86_64-cpython-311/pmg_qt/pymol_gl_widget.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt
copying build/lib.linux-x86_64-cpython-311/pmg_qt/pymol_qt_gui.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt
copying build/lib.linux-x86_64-cpython-311/pmg_qt/shortcut_menu_gui.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt
copying build/lib.linux-x86_64-cpython-311/pmg_qt/volume.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt
creating /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_tk
creating /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_tk/skins
creating /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_tk/skins/demo
copying build/lib.linux-x86_64-cpython-311/pmg_tk/skins/demo/__init__.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_tk/skins/demo
creating /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_tk/skins/normal
copying build/lib.linux-x86_64-cpython-311/pmg_tk/skins/normal/ModalWindow.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_tk/skins/normal
copying build/lib.linux-x86_64-cpython-311/pmg_tk/skins/normal/__init__.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_tk/skins/normal
copying build/lib.linux-x86_64-cpython-311/pmg_tk/skins/normal/builder.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_tk/skins/normal
copying build/lib.linux-x86_64-cpython-311/pmg_tk/skins/__init__.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_tk/skins
creating /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_tk/startup
copying build/lib.linux-x86_64-cpython-311/pmg_tk/startup/__init__.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_tk/startup
copying build/lib.linux-x86_64-cpython-311/pmg_tk/ColorEditor.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_tk
copying build/lib.linux-x86_64-cpython-311/pmg_tk/Demo.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_tk
copying build/lib.linux-x86_64-cpython-311/pmg_tk/PyMOLMapLoad.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_tk
copying build/lib.linux-x86_64-cpython-311/pmg_tk/SetEditor.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_tk
copying build/lib.linux-x86_64-cpython-311/pmg_tk/Setting.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_tk
copying build/lib.linux-x86_64-cpython-311/pmg_tk/TextEditor.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_tk
copying build/lib.linux-x86_64-cpython-311/pmg_tk/__init__.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_tk
copying build/lib.linux-x86_64-cpython-311/pmg_tk/volume.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_tk
copying build/lib.linux-x86_64-cpython-311/pmg_tk/PMGApp.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_tk
creating /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/_cmd.cpython-311-x86_64-linux-gnu.so -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
creating /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/Qt
copying build/lib.linux-x86_64-cpython-311/pymol/Qt/__init__.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/Qt
copying build/lib.linux-x86_64-cpython-311/pymol/Qt/utils.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/Qt
creating /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/plugins
copying build/lib.linux-x86_64-cpython-311/pymol/plugins/__init__.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/plugins
copying build/lib.linux-x86_64-cpython-311/pymol/plugins/installation.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/plugins
copying build/lib.linux-x86_64-cpython-311/pymol/plugins/legacysupport.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/plugins
copying build/lib.linux-x86_64-cpython-311/pymol/plugins/managergui.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/plugins
copying build/lib.linux-x86_64-cpython-311/pymol/plugins/managergui_qt.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/plugins
copying build/lib.linux-x86_64-cpython-311/pymol/plugins/repository.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/plugins
creating /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/stereochemistry
copying build/lib.linux-x86_64-cpython-311/pymol/stereochemistry/__init__.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/stereochemistry
creating /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard
copying build/lib.linux-x86_64-cpython-311/pymol/wizard/__init__.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard
copying build/lib.linux-x86_64-cpython-311/pymol/wizard/annotation.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard
copying build/lib.linux-x86_64-cpython-311/pymol/wizard/appearance.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard
copying build/lib.linux-x86_64-cpython-311/pymol/wizard/benchmark.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard
copying build/lib.linux-x86_64-cpython-311/pymol/wizard/box.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard
copying build/lib.linux-x86_64-cpython-311/pymol/wizard/charge.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard
copying build/lib.linux-x86_64-cpython-311/pymol/wizard/cleanup.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard
copying build/lib.linux-x86_64-cpython-311/pymol/wizard/command.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard
copying build/lib.linux-x86_64-cpython-311/pymol/wizard/demo.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard
copying build/lib.linux-x86_64-cpython-311/pymol/wizard/density.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard
copying build/lib.linux-x86_64-cpython-311/pymol/wizard/distance.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard
copying build/lib.linux-x86_64-cpython-311/pymol/wizard/dragging.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard
copying build/lib.linux-x86_64-cpython-311/pymol/wizard/filter.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard
copying build/lib.linux-x86_64-cpython-311/pymol/wizard/label.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard
copying build/lib.linux-x86_64-cpython-311/pymol/wizard/measurement.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard
copying build/lib.linux-x86_64-cpython-311/pymol/wizard/message.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard
copying build/lib.linux-x86_64-cpython-311/pymol/wizard/mutagenesis.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard
copying build/lib.linux-x86_64-cpython-311/pymol/wizard/nucmutagenesis.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard
copying build/lib.linux-x86_64-cpython-311/pymol/wizard/openvr.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard
copying build/lib.linux-x86_64-cpython-311/pymol/wizard/pair_fit.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard
copying build/lib.linux-x86_64-cpython-311/pymol/wizard/pseudoatom.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard
copying build/lib.linux-x86_64-cpython-311/pymol/wizard/renaming.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard
copying build/lib.linux-x86_64-cpython-311/pymol/wizard/sculpting.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard
copying build/lib.linux-x86_64-cpython-311/pymol/wizard/security.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard
copying build/lib.linux-x86_64-cpython-311/pymol/wizard/stereodemo.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard
copying build/lib.linux-x86_64-cpython-311/pymol/wizard/toggle.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard
copying build/lib.linux-x86_64-cpython-311/pymol/__init__.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/__main__.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/_gui.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/api.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/callback.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/cgo.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/checking.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/cmd.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/colorprinting.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/colorramping.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/commanding.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/completing.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/computing.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/constants.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/constants_palette.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/controlling.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/creating.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/diagnosing.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/editing.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/editor.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/experimenting.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/exporting.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/externing.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/feedingback.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/fitting.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/gui.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/headering.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/helping.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/importing.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/internal.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/invocation.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/keyboard.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/keywords.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/lazyio.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/locking.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/menu.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/monitoring.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/morphing.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/movie.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/moving.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/mpeg_encode.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/parser.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/parsing.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/povray.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/preset.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/pymolhttpd.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/querying.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/rpc.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/save_shortcut.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/selecting.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/selector.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/seqalign.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/setting.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/shortcut.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/shortcut_dict.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/shortcut_manager.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/util.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/vfont.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/viewing.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/wizarding.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/xray.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/xwin.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
creating /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol2
copying build/lib.linux-x86_64-cpython-311/pymol2/__init__.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol2
copying build/lib.linux-x86_64-cpython-311/pymol2/cmd2.py -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol2
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/bmin/__init__.py to __init__.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/bmin/commands.py to commands.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/bmin/realtime.py to realtime.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/bmin/state.py to state.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/bmin/util.py to util.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/champ/__init__.py to __init__.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/champ/amber99.py to amber99.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/champ/assign.py to assign.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/champ/formal_charges.py to formal_charges.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/fast/__init__.py to __init__.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/fragments/__init__.py to __init__.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/mmtf/__init__.py to __init__.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/mmtf/io.py to io.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/tinker/__init__.py to __init__.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/tinker/amber.py to amber.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/tinker/keyword.py to keyword.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/tinker/realtime.py to realtime.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/tinker/state.py to state.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/__init__.py to __init__.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/arc.py to arc.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/bond_amber.py to bond_amber.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/bond_mmff.py to bond_mmff.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/bonds.py to bonds.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/brick.py to brick.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/cc1.py to cc1.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/charge.py to charge.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/cif.py to cif.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/cpv.py to cpv.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/dictdb.py to dictdb.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/gamess1.py to gamess1.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/gms.py to gms.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/hetatm.py to hetatm.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/io.py to io.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/lst.py to lst.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/mae.py to mae.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/map.py to map.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/mass.py to mass.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/mmd.py to mmd.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/models.py to models.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/mol.py to mol.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/mol2.py to mol2.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/neighbor.py to neighbor.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/pdb.py to pdb.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/pkl.py to pkl.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/place.py to place.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/protein.py to protein.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/protein_amber.py to protein_amber.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/protein_amber99.py to protein_amber99.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/protein_mmff.py to protein_mmff.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/protein_residues.py to protein_residues.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/sdf.py to sdf.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/solvate.py to solvate.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/water_amber.py to water_amber.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/water_residues.py to water_residues.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/xyz.py to xyz.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/forms/__init__.py to __init__.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/syntax/__init__.py to __init__.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/syntax/pml.py to pml.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/syntax/pmlparser.py to pmlparser.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/syntax/python.py to python.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/TextEditor.py to TextEditor.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/__init__.py to __init__.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/advanced_settings_gui.py to advanced_settings_gui.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/builder.py to builder.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/file_dialogs.py to file_dialogs.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/keymapping.py to keymapping.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/mimic_pmg_tk.py to mimic_pmg_tk.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/mimic_tk.py to mimic_tk.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/properties_dialog.py to properties_dialog.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/pymol_gl_widget.py to pymol_gl_widget.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/pymol_qt_gui.py to pymol_qt_gui.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/shortcut_menu_gui.py to shortcut_menu_gui.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/volume.py to volume.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_tk/skins/demo/__init__.py to __init__.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_tk/skins/normal/ModalWindow.py to ModalWindow.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_tk/skins/normal/__init__.py to __init__.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_tk/skins/normal/builder.py to builder.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_tk/skins/__init__.py to __init__.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_tk/startup/__init__.py to __init__.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_tk/ColorEditor.py to ColorEditor.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_tk/Demo.py to Demo.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_tk/PyMOLMapLoad.py to PyMOLMapLoad.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_tk/SetEditor.py to SetEditor.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_tk/Setting.py to Setting.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_tk/TextEditor.py to TextEditor.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_tk/__init__.py to __init__.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_tk/volume.py to volume.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_tk/PMGApp.py to PMGApp.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/Qt/__init__.py to __init__.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/Qt/utils.py to utils.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/plugins/__init__.py to __init__.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/plugins/installation.py to installation.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/plugins/legacysupport.py to legacysupport.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/plugins/managergui.py to managergui.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/plugins/managergui_qt.py to managergui_qt.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/plugins/repository.py to repository.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/stereochemistry/__init__.py to __init__.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard/__init__.py to __init__.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard/annotation.py to annotation.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard/appearance.py to appearance.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard/benchmark.py to benchmark.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard/box.py to box.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard/charge.py to charge.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard/cleanup.py to cleanup.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard/command.py to command.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard/demo.py to demo.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard/density.py to density.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard/distance.py to distance.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard/dragging.py to dragging.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard/filter.py to filter.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard/label.py to label.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard/measurement.py to measurement.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard/message.py to message.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard/mutagenesis.py to mutagenesis.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard/nucmutagenesis.py to nucmutagenesis.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard/openvr.py to openvr.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard/pair_fit.py to pair_fit.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard/pseudoatom.py to pseudoatom.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard/renaming.py to renaming.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard/sculpting.py to sculpting.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard/security.py to security.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard/stereodemo.py to stereodemo.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard/toggle.py to toggle.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/__init__.py to __init__.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/__main__.py to __main__.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/_gui.py to _gui.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/api.py to api.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/callback.py to callback.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/cgo.py to cgo.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/checking.py to checking.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/cmd.py to cmd.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/colorprinting.py to colorprinting.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/colorramping.py to colorramping.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/commanding.py to commanding.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/completing.py to completing.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/computing.py to computing.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/constants.py to constants.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/constants_palette.py to constants_palette.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/controlling.py to controlling.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/creating.py to creating.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/diagnosing.py to diagnosing.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/editing.py to editing.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/editor.py to editor.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/experimenting.py to experimenting.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/exporting.py to exporting.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/externing.py to externing.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/feedingback.py to feedingback.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/fitting.py to fitting.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/gui.py to gui.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/headering.py to headering.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/helping.py to helping.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/importing.py to importing.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/internal.py to internal.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/invocation.py to invocation.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/keyboard.py to keyboard.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/keywords.py to keywords.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/lazyio.py to lazyio.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/locking.py to locking.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/menu.py to menu.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/monitoring.py to monitoring.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/morphing.py to morphing.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/movie.py to movie.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/moving.py to moving.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/mpeg_encode.py to mpeg_encode.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/parser.py to parser.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/parsing.py to parsing.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/povray.py to povray.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/preset.py to preset.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/pymolhttpd.py to pymolhttpd.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/querying.py to querying.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/rpc.py to rpc.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/save_shortcut.py to save_shortcut.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/selecting.py to selecting.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/selector.py to selector.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/seqalign.py to seqalign.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/setting.py to setting.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/shortcut.py to shortcut.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/shortcut_dict.py to shortcut_dict.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/shortcut_manager.py to shortcut_manager.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/util.py to util.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/vfont.py to vfont.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/viewing.py to viewing.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizarding.py to wizarding.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/xray.py to xray.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/xwin.py to xwin.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol2/__init__.py to __init__.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol2/cmd2.py to cmd2.cpython-311.pyc
writing byte-compilation script '/tmp/tmpg5fxe1kw.py'
/usr/bin/python3 /tmp/tmpg5fxe1kw.py
removing /tmp/tmpg5fxe1kw.py
running install_egg_info
running egg_info
creating pymol.egg-info
writing pymol.egg-info/PKG-INFO
writing dependency_links to pymol.egg-info/dependency_links.txt
writing top-level names to pymol.egg-info/top_level.txt
writing manifest file 'pymol.egg-info/SOURCES.txt'
/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py:643: SetuptoolsDeprecationWarning: Custom 'build_py' does not implement 'get_data_files_without_manifest'.
Please extend command classes from setuptools instead of distutils.
  warnings.warn(
reading manifest file 'pymol.egg-info/SOURCES.txt'
adding license file 'LICENSE'
adding license file 'AUTHORS'
writing manifest file 'pymol.egg-info/SOURCES.txt'
Copying pymol.egg-info to /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol-2.5.0-py3.11.egg-info
copying LICENSE -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying data -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/data
copying test -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/test
copying examples -> /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/examples
creating /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/bin
Exception ignored in: <function Pool.__del__ at 0x7fa71cd08180>
Traceback (most recent call last):
  File "/usr/lib64/python3.11/multiprocessing/pool.py", line 271, in __del__
  File "/usr/lib64/python3.11/multiprocessing/queues.py", line 377, in put
  File "/usr/lib64/python3.11/multiprocessing/connection.py", line 204, in send_bytes
  File "/usr/lib64/python3.11/multiprocessing/connection.py", line 404, in _send_bytes
AttributeError: 'NoneType' object has no attribute 'pack'
+ rm -rfv /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/bin/__pycache__
+ echo '#!/bin/sh'
+ echo 'export PYMOL_PATH=/usr/lib64/python3.11/site-packages/pymol'
+ echo 'exec /usr/bin/python3 /usr/lib64/python3.11/site-packages/pymol/__init__.py "$@"'
+ cp -a data examples test /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/
+ rm -f /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/examples/devel/link_demo.py
+ rm -f /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/examples/devel/particle01.py
+ rm -f /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/examples/devel/particle02.py
+ rm -f /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/test/inp/B03.py
+ rm -f /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/test/inp/B05.py
+ rm -f /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/test/inp/B11.py
+ rm -f /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/test/ref/T01.log
+ rm -f /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/pymol_path/examples/devel/link_demo.py
+ rm -f /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/pymol_path/examples/devel/particle01.py
+ rm -f /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/pymol_path/examples/devel/particle02.py
+ rm -f /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/pymol_path/test/inp/B03.py
+ rm -f /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/pymol_path/test/inp/B05.py
+ rm -f /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/pymol_path/test/inp/B11.py
+ rm -f /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/pymol_path/test/ref/T01.log
+ mkdir -p /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/bin
+ install -p -m 755 pymol /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/bin/
+ desktop-file-install --vendor= --dir=/builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/share/applications /builddir/build/SOURCES/pymol.desktop
+ mkdir -p /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/share/pixmaps
+ install -p -m 644 /builddir/build/SOURCES/pymol.png /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/share/pixmaps/
+ mkdir -p /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/share/metainfo
+ install -p -m 644 /builddir/build/SOURCES/pymol.appdata.xml /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/share/metainfo/
+ appstream-util validate-relax --nonet /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64//usr/share/metainfo/pymol.appdata.xml
/builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64//usr/share/metainfo/pymol.appdata.xml: OK
+ /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 2.5.0-5.fc38 --unique-debug-suffix -2.5.0-5.fc38.x86_64 --unique-debug-src-base pymol-2.5.0-5.fc38.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/pymol-open-source-2.5.0
extracting debug info from /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/champ/_champ.cpython-311-x86_64-linux-gnu.so
extracting debug info from /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/_cmd.cpython-311-x86_64-linux-gnu.so
original debug info size: 59160kB, size after compression: 45192kB
/usr/bin/sepdebugcrcfix: Updated 2 CRC32s, 0 CRC32s did match.
51230 blocks
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/check-rpaths
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
*** WARNING: ./usr/src/debug/pymol-2.5.0-5.fc38.x86_64/layer3/MaeExportHelpers.h is executable but has no shebang, removing executable bit
*** WARNING: ./usr/src/debug/pymol-2.5.0-5.fc38.x86_64/layer3/MaeExportHelpers.cpp is executable but has no shebang, removing executable bit
*** WARNING: ./usr/src/debug/pymol-2.5.0-5.fc38.x86_64/layer0/GraphicsUtil.h is executable but has no shebang, removing executable bit
*** WARNING: ./usr/src/debug/pymol-2.5.0-5.fc38.x86_64/layer0/GraphicsUtil.cpp is executable but has no shebang, removing executable bit
mangling shebang in /usr/bin/pymol from /bin/sh to #!/usr/bin/sh
+ /usr/lib/rpm/brp-remove-la-files
+ /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0
Bytecompiling .py files below /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib/debug/usr/lib64/python3.11 using python3.11
Bytecompiling .py files below /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/lib64/python3.11 using python3.11
+ /usr/lib/rpm/redhat/brp-python-hardlink
Processing files: pymol-2.5.0-5.fc38.x86_64
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.46f7qC
+ umask 022
+ cd /builddir/build/BUILD
+ cd pymol-open-source-2.5.0
+ DOCDIR=/builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/share/doc/pymol
+ export LC_ALL=C
+ LC_ALL=C
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/share/doc/pymol
+ cp -pr AUTHORS /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/share/doc/pymol
+ cp -pr DEVELOPERS /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/share/doc/pymol
+ cp -pr README.md /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/share/doc/pymol
+ cp -pr ChangeLog /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/share/doc/pymol
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.1GI79Q
+ umask 022
+ cd /builddir/build/BUILD
+ cd pymol-open-source-2.5.0
+ LICENSEDIR=/builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/share/licenses/pymol
+ export LC_ALL=C
+ LC_ALL=C
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/share/licenses/pymol
+ cp -pr LICENSE /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64/usr/share/licenses/pymol
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: PyMOL(x86-64) = 0:2.5.0-5.fc38 application() application(pymol.desktop) metainfo() metainfo(pymol.appdata.xml) pymol = 2.5.0-5.fc38 pymol(x86-64) = 2.5.0-5.fc38 python3.11dist(pymol) = 2.5 python3dist(pymol) = 2.5
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: /usr/bin/sh libGL.so.1()(64bit) libGLEW.so.2.2()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_2.7)(64bit) libfreetype.so.6()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libgomp.so.1()(64bit) libgomp.so.1(GOMP_1.0)(64bit) libgomp.so.1(GOMP_4.0)(64bit) libgomp.so.1(OMP_1.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.27)(64bit) libm.so.6(GLIBC_2.29)(64bit) libm.so.6(GLIBC_2.35)(64bit) libnetcdf.so.19()(64bit) libpng16.so.16()(64bit) libpng16.so.16(PNG16_0)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.5)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libxml2.so.2()(64bit) libxml2.so.2(LIBXML2_2.4.30)(64bit) libxml2.so.2(LIBXML2_2.6.0)(64bit) libxml2.so.2(LIBXML2_2.6.3)(64bit) python(abi) = 3.11 rtld(GNU_HASH)
Processing files: pymol-debugsource-2.5.0-5.fc38.x86_64
Provides: pymol-debugsource = 2.5.0-5.fc38 pymol-debugsource(x86-64) = 2.5.0-5.fc38
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: pymol-debuginfo-2.5.0-5.fc38.x86_64
Provides: debuginfo(build-id) = 47d0ef1ead549a82a45573398bceb97b8559554b debuginfo(build-id) = bdc85839a2a16ec4d068151471b7f4fc3d6f6214 pymol-debuginfo = 2.5.0-5.fc38 pymol-debuginfo(x86-64) = 2.5.0-5.fc38
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: pymol-debugsource(x86-64) = 2.5.0-5.fc38
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64
Wrote: /builddir/build/RPMS/pymol-debugsource-2.5.0-5.fc38.x86_64.rpm
Wrote: /builddir/build/RPMS/pymol-debuginfo-2.5.0-5.fc38.x86_64.rpm
Wrote: /builddir/build/RPMS/pymol-2.5.0-5.fc38.x86_64.rpm
Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.wymJ6i
+ umask 022
+ cd /builddir/build/BUILD
+ cd pymol-open-source-2.5.0
+ /usr/bin/rm -rf /builddir/build/BUILDROOT/pymol-2.5.0-5.fc38.x86_64
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.wcIamj
+ umask 022
+ cd /builddir/build/BUILD
+ rm -rf pymol-open-source-2.5.0 pymol-open-source-2.5.0.gemspec
+ RPM_EC=0
++ jobs -p
+ exit 0
Finish: rpmbuild pymol-2.5.0-5.fc38.src.rpm
Finish: build phase for pymol-2.5.0-5.fc38.src.rpm
INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-x86_64-1662040121.852928/root/var/log/dnf.rpm.log
/var/lib/mock/fedora-rawhide-x86_64-1662040121.852928/root/var/log/dnf.librepo.log
/var/lib/mock/fedora-rawhide-x86_64-1662040121.852928/root/var/log/dnf.log
INFO: Done(/var/lib/copr-rpmbuild/results/pymol-2.5.0-5.fc38.src.rpm) Config(child) 5 minutes 55 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
Finish: run
Running RPMResults tool