Mock Version: 4.1 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/python-pyphi.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1686646863.521875/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.56rsfg88:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.56rsfg88:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '49312a1612fc41b9b80e0ced3fc3ecfe', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1686646863.521875/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.56rsfg88:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/python-pyphi.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1682380800 Wrote: /builddir/build/SRPMS/python-pyphi-1.2.1-17.fc39.src.rpm Child return code was: 0 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -br --target x86_64 --nodeps /builddir/build/SPECS/python-pyphi.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1686646863.521875/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.56rsfg88:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueraiseExc=FalseprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.56rsfg88:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '01a06c5d2a6d43829812eb09930ce5fb', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1686646863.521875/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.56rsfg88:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -br --target x86_64 --nodeps /builddir/build/SPECS/python-pyphi.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1682380800 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.uTljPc + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf pyphi-1.2.1 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/pyphi-1.2.1.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd pyphi-1.2.1 + /usr/bin/mkdir -p SPECPARTS + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0001-fix-py3.10-correct-collections-import.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/22.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + find . -type f -name '*.py' -execdir sed -r -i '1{/^#!/d}' '{}' + + rm -v profiling/gprof2dot removed 'profiling/gprof2dot' + rm -rvf docs/_themes/LICENSE docs/_themes/README.rst docs/_themes/flask_theme_support.py docs/_themes/kr docs/_themes/kr_small removed 'docs/_themes/LICENSE' removed 'docs/_themes/README.rst' removed 'docs/_themes/flask_theme_support.py' removed 'docs/_themes/kr/theme.conf' removed 'docs/_themes/kr/static/small_flask.css' removed 'docs/_themes/kr/static/flasky.css_t' removed directory 'docs/_themes/kr/static' removed 'docs/_themes/kr/relations.html' removed 'docs/_themes/kr/layout.html' removed directory 'docs/_themes/kr' removed 'docs/_themes/kr_small/theme.conf' removed 'docs/_themes/kr_small/static/flasky.css_t' removed directory 'docs/_themes/kr_small/static' removed 'docs/_themes/kr_small/layout.html' removed directory 'docs/_themes/kr_small' + tee test_requirements.filtered.txt + sed -r '/^(coverage|asv|virtualenv)\b/d' test_requirements.txt numpy >=1.1.4 pytest >=3.1.0 pytest-lazy-fixture + echo 'latex_engine = '\''xelatex'\''' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.e4SClk + umask 022 + cd /builddir/build/BUILD + cd pyphi-1.2.1 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + '[' -f setup.py ']' + echo 'python3dist(setuptools) >= 40.8' + echo 'python3dist(wheel)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/pyphi-1.2.1/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + TMPDIR=/builddir/build/BUILD/pyphi-1.2.1/.pyproject-builddir + RPM_TOXENV=py311 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/pyphi-1.2.1/pyproject-wheeldir --output /builddir/build/BUILD/python-pyphi-1.2.1-17.fc39.x86_64-pyproject-buildrequires test_requirements.filtered.txt Handling numpy >=1.1.4 from requirements file test_requirements.filtered.txt Requirement not satisfied: numpy >=1.1.4 Handling pytest >=3.1.0 from requirements file test_requirements.filtered.txt Requirement not satisfied: pytest >=3.1.0 Handling pytest-lazy-fixture from requirements file test_requirements.filtered.txt Requirement not satisfied: pytest-lazy-fixture Exiting dependency generation pass: all requirements files + cat /builddir/build/BUILD/python-pyphi-1.2.1-17.fc39.x86_64-pyproject-buildrequires + rm -rfv '*.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-pyphi-1.2.1-17.fc39.buildreqs.nosrc.rpm Child return code was: 11 Dynamic buildrequires detected Going to install missing buildrequires. See root.log for details. ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -br --target x86_64 --nodeps /builddir/build/SPECS/python-pyphi.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1686646863.521875/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.56rsfg88:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueraiseExc=FalseprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.56rsfg88:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '220933f5000542279b0c2508980400ad', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1686646863.521875/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.56rsfg88:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -br --target x86_64 --nodeps /builddir/build/SPECS/python-pyphi.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1682380800 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.zFBkw1 + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf pyphi-1.2.1 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/pyphi-1.2.1.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd pyphi-1.2.1 + /usr/bin/mkdir -p SPECPARTS + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0001-fix-py3.10-correct-collections-import.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/22.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + find . -type f -name '*.py' -execdir sed -r -i '1{/^#!/d}' '{}' + + rm -v profiling/gprof2dot removed 'profiling/gprof2dot' + rm -rvf docs/_themes/LICENSE docs/_themes/README.rst docs/_themes/flask_theme_support.py docs/_themes/kr docs/_themes/kr_small removed 'docs/_themes/LICENSE' removed 'docs/_themes/README.rst' removed 'docs/_themes/flask_theme_support.py' removed 'docs/_themes/kr/theme.conf' removed 'docs/_themes/kr/static/small_flask.css' removed 'docs/_themes/kr/static/flasky.css_t' removed directory 'docs/_themes/kr/static' removed 'docs/_themes/kr/relations.html' removed 'docs/_themes/kr/layout.html' removed directory 'docs/_themes/kr' removed 'docs/_themes/kr_small/theme.conf' removed 'docs/_themes/kr_small/static/flasky.css_t' removed directory 'docs/_themes/kr_small/static' removed 'docs/_themes/kr_small/layout.html' removed directory 'docs/_themes/kr_small' + sed -r '/^(coverage|asv|virtualenv)\b/d' test_requirements.txt + tee test_requirements.filtered.txt numpy >=1.1.4 pytest >=3.1.0 pytest-lazy-fixture + echo 'latex_engine = '\''xelatex'\''' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.mWi33J + umask 022 + cd /builddir/build/BUILD + cd pyphi-1.2.1 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + '[' -f setup.py ']' + echo 'python3dist(setuptools) >= 40.8' + echo 'python3dist(wheel)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/pyphi-1.2.1/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + TMPDIR=/builddir/build/BUILD/pyphi-1.2.1/.pyproject-builddir + RPM_TOXENV=py311 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/pyphi-1.2.1/pyproject-wheeldir --output /builddir/build/BUILD/python-pyphi-1.2.1-17.fc39.x86_64-pyproject-buildrequires test_requirements.filtered.txt Handling numpy >=1.1.4 from requirements file test_requirements.filtered.txt Requirement satisfied: numpy >=1.1.4 (installed: numpy 1.24.3) Handling pytest >=3.1.0 from requirements file test_requirements.filtered.txt Requirement satisfied: pytest >=3.1.0 (installed: pytest 7.3.2) Handling pytest-lazy-fixture from requirements file test_requirements.filtered.txt Requirement satisfied: pytest-lazy-fixture (installed: pytest-lazy-fixture 0.6.3) Handling setuptools >= 40.8 from default build backend Requirement satisfied: setuptools >= 40.8 (installed: setuptools 67.7.2) Handling wheel from default build backend Requirement satisfied: wheel (installed: wheel 0.40.0) /usr/lib/python3.11/site-packages/setuptools/dist.py:755: SetuptoolsDeprecationWarning: Invalid dash-separated options !! ******************************************************************************** Usage of dash-separated 'upload-dir' will not be supported in future versions. Please use the underscore name 'upload_dir' instead. By 2023-Sep-26, you need to update your project and remove deprecated calls or your builds will no longer be supported. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self.warn_dash_deprecation(opt, section) running egg_info creating pyphi.egg-info writing pyphi.egg-info/PKG-INFO writing dependency_links to pyphi.egg-info/dependency_links.txt writing requirements to pyphi.egg-info/requires.txt writing top-level names to pyphi.egg-info/top_level.txt writing manifest file 'pyphi.egg-info/SOURCES.txt' reading manifest file 'pyphi.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.md' writing manifest file 'pyphi.egg-info/SOURCES.txt' Handling wheel from get_requires_for_build_wheel Requirement satisfied: wheel (installed: wheel 0.40.0) running dist_info writing pyphi.egg-info/PKG-INFO writing dependency_links to pyphi.egg-info/dependency_links.txt writing requirements to pyphi.egg-info/requires.txt writing top-level names to pyphi.egg-info/top_level.txt reading manifest file 'pyphi.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.md' writing manifest file 'pyphi.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/pyphi-1.2.1/pyphi-1.2.1.dist-info' Handling decorator (>=4.0.0) from hook generated metadata: Requires-Dist (pyphi) Requirement not satisfied: decorator (>=4.0.0) Handling joblib (>=0.8.0) from hook generated metadata: Requires-Dist (pyphi) Requirement not satisfied: joblib (>=0.8.0) Handling numpy (>=1.11.0) from hook generated metadata: Requires-Dist (pyphi) Requirement satisfied: numpy (>=1.11.0) (installed: numpy 1.24.3) Handling psutil (>=2.1.1) from hook generated metadata: Requires-Dist (pyphi) Requirement not satisfied: psutil (>=2.1.1) Handling pyemd (>=0.3.0) from hook generated metadata: Requires-Dist (pyphi) Requirement not satisfied: pyemd (>=0.3.0) Handling pymongo (>=2.7.1) from hook generated metadata: Requires-Dist (pyphi) Requirement not satisfied: pymongo (>=2.7.1) Handling pyyaml (>=3.13) from hook generated metadata: Requires-Dist (pyphi) Requirement not satisfied: pyyaml (>=3.13) Handling redis (>=2.10.5) from hook generated metadata: Requires-Dist (pyphi) Requirement not satisfied: redis (>=2.10.5) Handling scipy (>=0.13.3) from hook generated metadata: Requires-Dist (pyphi) Requirement not satisfied: scipy (>=0.13.3) Handling tblib (>=1.3.2) from hook generated metadata: Requires-Dist (pyphi) Requirement not satisfied: tblib (>=1.3.2) Handling tqdm (>=4.20.0) from hook generated metadata: Requires-Dist (pyphi) Requirement not satisfied: tqdm (>=4.20.0) + cat /builddir/build/BUILD/python-pyphi-1.2.1-17.fc39.x86_64-pyproject-buildrequires + rm -rfv pyphi-1.2.1.dist-info/ removed 'pyphi-1.2.1.dist-info/LICENSE.md' removed 'pyphi-1.2.1.dist-info/METADATA' removed 'pyphi-1.2.1.dist-info/top_level.txt' removed directory 'pyphi-1.2.1.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-pyphi-1.2.1-17.fc39.buildreqs.nosrc.rpm Child return code was: 11 Dynamic buildrequires detected Going to install missing buildrequires. See root.log for details. ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -br --target x86_64 --nodeps /builddir/build/SPECS/python-pyphi.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1686646863.521875/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.56rsfg88:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueraiseExc=FalseprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.56rsfg88:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '70f255f3d1804603a8a5a35fa30fbc71', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1686646863.521875/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.56rsfg88:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -br --target x86_64 --nodeps /builddir/build/SPECS/python-pyphi.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1682380800 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.OuquTs + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf pyphi-1.2.1 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/pyphi-1.2.1.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd pyphi-1.2.1 + /usr/bin/mkdir -p SPECPARTS + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0001-fix-py3.10-correct-collections-import.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/22.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + find . -type f -name '*.py' -execdir sed -r -i '1{/^#!/d}' '{}' + + rm -v profiling/gprof2dot removed 'profiling/gprof2dot' + rm -rvf docs/_themes/LICENSE docs/_themes/README.rst docs/_themes/flask_theme_support.py docs/_themes/kr docs/_themes/kr_small removed 'docs/_themes/LICENSE' removed 'docs/_themes/README.rst' removed 'docs/_themes/flask_theme_support.py' removed 'docs/_themes/kr/theme.conf' removed 'docs/_themes/kr/static/small_flask.css' removed 'docs/_themes/kr/static/flasky.css_t' removed directory 'docs/_themes/kr/static' removed 'docs/_themes/kr/relations.html' removed 'docs/_themes/kr/layout.html' removed directory 'docs/_themes/kr' removed 'docs/_themes/kr_small/theme.conf' removed 'docs/_themes/kr_small/static/flasky.css_t' removed directory 'docs/_themes/kr_small/static' removed 'docs/_themes/kr_small/layout.html' removed directory 'docs/_themes/kr_small' + sed -r '/^(coverage|asv|virtualenv)\b/d' test_requirements.txt + tee test_requirements.filtered.txt numpy >=1.1.4 pytest >=3.1.0 pytest-lazy-fixture + echo 'latex_engine = '\''xelatex'\''' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.hMM7iq + umask 022 + cd /builddir/build/BUILD + cd pyphi-1.2.1 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + '[' -f setup.py ']' + echo 'python3dist(setuptools) >= 40.8' + echo 'python3dist(wheel)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/pyphi-1.2.1/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + TMPDIR=/builddir/build/BUILD/pyphi-1.2.1/.pyproject-builddir + RPM_TOXENV=py311 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/pyphi-1.2.1/pyproject-wheeldir --output /builddir/build/BUILD/python-pyphi-1.2.1-17.fc39.x86_64-pyproject-buildrequires test_requirements.filtered.txt Handling numpy >=1.1.4 from requirements file test_requirements.filtered.txt Requirement satisfied: numpy >=1.1.4 (installed: numpy 1.24.3) Handling pytest >=3.1.0 from requirements file test_requirements.filtered.txt Requirement satisfied: pytest >=3.1.0 (installed: pytest 7.3.2) Handling pytest-lazy-fixture from requirements file test_requirements.filtered.txt Requirement satisfied: pytest-lazy-fixture (installed: pytest-lazy-fixture 0.6.3) Handling setuptools >= 40.8 from default build backend Requirement satisfied: setuptools >= 40.8 (installed: setuptools 67.7.2) Handling wheel from default build backend Requirement satisfied: wheel (installed: wheel 0.40.0) /usr/lib/python3.11/site-packages/setuptools/dist.py:755: SetuptoolsDeprecationWarning: Invalid dash-separated options !! ******************************************************************************** Usage of dash-separated 'upload-dir' will not be supported in future versions. Please use the underscore name 'upload_dir' instead. By 2023-Sep-26, you need to update your project and remove deprecated calls or your builds will no longer be supported. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self.warn_dash_deprecation(opt, section) running egg_info creating pyphi.egg-info writing pyphi.egg-info/PKG-INFO writing dependency_links to pyphi.egg-info/dependency_links.txt writing requirements to pyphi.egg-info/requires.txt writing top-level names to pyphi.egg-info/top_level.txt writing manifest file 'pyphi.egg-info/SOURCES.txt' reading manifest file 'pyphi.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.md' writing manifest file 'pyphi.egg-info/SOURCES.txt' Handling wheel from get_requires_for_build_wheel Requirement satisfied: wheel (installed: wheel 0.40.0) running dist_info writing pyphi.egg-info/PKG-INFO writing dependency_links to pyphi.egg-info/dependency_links.txt writing requirements to pyphi.egg-info/requires.txt writing top-level names to pyphi.egg-info/top_level.txt reading manifest file 'pyphi.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.md' writing manifest file 'pyphi.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/pyphi-1.2.1/pyphi-1.2.1.dist-info' Handling decorator (>=4.0.0) from hook generated metadata: Requires-Dist (pyphi) Requirement satisfied: decorator (>=4.0.0) (installed: decorator 5.1.1) Handling joblib (>=0.8.0) from hook generated metadata: Requires-Dist (pyphi) Requirement satisfied: joblib (>=0.8.0) (installed: joblib 1.2.0) Handling numpy (>=1.11.0) from hook generated metadata: Requires-Dist (pyphi) Requirement satisfied: numpy (>=1.11.0) (installed: numpy 1.24.3) Handling psutil (>=2.1.1) from hook generated metadata: Requires-Dist (pyphi) Requirement satisfied: psutil (>=2.1.1) (installed: psutil 5.9.2) Handling pyemd (>=0.3.0) from hook generated metadata: Requires-Dist (pyphi) Requirement satisfied: pyemd (>=0.3.0) (installed: pyemd 1.0.0) Handling pymongo (>=2.7.1) from hook generated metadata: Requires-Dist (pyphi) Requirement satisfied: pymongo (>=2.7.1) (installed: pymongo 4.2.0) Handling pyyaml (>=3.13) from hook generated metadata: Requires-Dist (pyphi) Requirement satisfied: pyyaml (>=3.13) (installed: pyyaml 6.0) Handling redis (>=2.10.5) from hook generated metadata: Requires-Dist (pyphi) Requirement satisfied: redis (>=2.10.5) (installed: redis 4.5.1) Handling scipy (>=0.13.3) from hook generated metadata: Requires-Dist (pyphi) Requirement satisfied: scipy (>=0.13.3) (installed: scipy 1.10.1) Handling tblib (>=1.3.2) from hook generated metadata: Requires-Dist (pyphi) Requirement satisfied: tblib (>=1.3.2) (installed: tblib 1.7.0) Handling tqdm (>=4.20.0) from hook generated metadata: Requires-Dist (pyphi) Requirement satisfied: tqdm (>=4.20.0) (installed: tqdm 4.65.0) + cat /builddir/build/BUILD/python-pyphi-1.2.1-17.fc39.x86_64-pyproject-buildrequires + rm -rfv pyphi-1.2.1.dist-info/ removed 'pyphi-1.2.1.dist-info/LICENSE.md' removed 'pyphi-1.2.1.dist-info/METADATA' removed 'pyphi-1.2.1.dist-info/top_level.txt' removed directory 'pyphi-1.2.1.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-pyphi-1.2.1-17.fc39.buildreqs.nosrc.rpm Child return code was: 11 Dynamic buildrequires detected Going to install missing buildrequires. See root.log for details. ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -ba --noprep --target x86_64 --nodeps /builddir/build/SPECS/python-pyphi.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1686646863.521875/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.56rsfg88:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.56rsfg88:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '54cda86afa154d5687c06a637a8ad372', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1686646863.521875/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.56rsfg88:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -ba --noprep --target x86_64 --nodeps /builddir/build/SPECS/python-pyphi.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1682380800 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.YH2Cws + umask 022 + cd /builddir/build/BUILD + cd pyphi-1.2.1 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + '[' -f setup.py ']' + echo 'python3dist(setuptools) >= 40.8' + echo 'python3dist(wheel)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/pyphi-1.2.1/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + TMPDIR=/builddir/build/BUILD/pyphi-1.2.1/.pyproject-builddir + RPM_TOXENV=py311 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/pyphi-1.2.1/pyproject-wheeldir --output /builddir/build/BUILD/python-pyphi-1.2.1-17.fc39.x86_64-pyproject-buildrequires test_requirements.filtered.txt Handling numpy >=1.1.4 from requirements file test_requirements.filtered.txt Requirement satisfied: numpy >=1.1.4 (installed: numpy 1.24.3) Handling pytest >=3.1.0 from requirements file test_requirements.filtered.txt Requirement satisfied: pytest >=3.1.0 (installed: pytest 7.3.2) Handling pytest-lazy-fixture from requirements file test_requirements.filtered.txt Requirement satisfied: pytest-lazy-fixture (installed: pytest-lazy-fixture 0.6.3) Handling setuptools >= 40.8 from default build backend Requirement satisfied: setuptools >= 40.8 (installed: setuptools 67.7.2) Handling wheel from default build backend Requirement satisfied: wheel (installed: wheel 0.40.0) /usr/lib/python3.11/site-packages/setuptools/dist.py:755: SetuptoolsDeprecationWarning: Invalid dash-separated options !! ******************************************************************************** Usage of dash-separated 'upload-dir' will not be supported in future versions. Please use the underscore name 'upload_dir' instead. By 2023-Sep-26, you need to update your project and remove deprecated calls or your builds will no longer be supported. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self.warn_dash_deprecation(opt, section) running egg_info writing pyphi.egg-info/PKG-INFO writing dependency_links to pyphi.egg-info/dependency_links.txt writing requirements to pyphi.egg-info/requires.txt writing top-level names to pyphi.egg-info/top_level.txt reading manifest file 'pyphi.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.md' writing manifest file 'pyphi.egg-info/SOURCES.txt' Handling wheel from get_requires_for_build_wheel Requirement satisfied: wheel (installed: wheel 0.40.0) running dist_info writing pyphi.egg-info/PKG-INFO writing dependency_links to pyphi.egg-info/dependency_links.txt writing requirements to pyphi.egg-info/requires.txt writing top-level names to pyphi.egg-info/top_level.txt reading manifest file 'pyphi.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.md' writing manifest file 'pyphi.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/pyphi-1.2.1/pyphi-1.2.1.dist-info' Handling decorator (>=4.0.0) from hook generated metadata: Requires-Dist (pyphi) Requirement satisfied: decorator (>=4.0.0) (installed: decorator 5.1.1) Handling joblib (>=0.8.0) from hook generated metadata: Requires-Dist (pyphi) Requirement satisfied: joblib (>=0.8.0) (installed: joblib 1.2.0) Handling numpy (>=1.11.0) from hook generated metadata: Requires-Dist (pyphi) Requirement satisfied: numpy (>=1.11.0) (installed: numpy 1.24.3) Handling psutil (>=2.1.1) from hook generated metadata: Requires-Dist (pyphi) Requirement satisfied: psutil (>=2.1.1) (installed: psutil 5.9.2) Handling pyemd (>=0.3.0) from hook generated metadata: Requires-Dist (pyphi) Requirement satisfied: pyemd (>=0.3.0) (installed: pyemd 1.0.0) Handling pymongo (>=2.7.1) from hook generated metadata: Requires-Dist (pyphi) Requirement satisfied: pymongo (>=2.7.1) (installed: pymongo 4.2.0) Handling pyyaml (>=3.13) from hook generated metadata: Requires-Dist (pyphi) Requirement satisfied: pyyaml (>=3.13) (installed: pyyaml 6.0) Handling redis (>=2.10.5) from hook generated metadata: Requires-Dist (pyphi) Requirement satisfied: redis (>=2.10.5) (installed: redis 4.5.1) Handling scipy (>=0.13.3) from hook generated metadata: Requires-Dist (pyphi) Requirement satisfied: scipy (>=0.13.3) (installed: scipy 1.10.1) Handling tblib (>=1.3.2) from hook generated metadata: Requires-Dist (pyphi) Requirement satisfied: tblib (>=1.3.2) (installed: tblib 1.7.0) Handling tqdm (>=4.20.0) from hook generated metadata: Requires-Dist (pyphi) Requirement satisfied: tqdm (>=4.20.0) (installed: tqdm 4.65.0) + cat /builddir/build/BUILD/python-pyphi-1.2.1-17.fc39.x86_64-pyproject-buildrequires + rm -rfv pyphi-1.2.1.dist-info/ removed 'pyphi-1.2.1.dist-info/LICENSE.md' removed 'pyphi-1.2.1.dist-info/METADATA' removed 'pyphi-1.2.1.dist-info/top_level.txt' removed directory 'pyphi-1.2.1.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.Xry9FU + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd pyphi-1.2.1 + mkdir -p /builddir/build/BUILD/pyphi-1.2.1/.pyproject-builddir + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + TMPDIR=/builddir/build/BUILD/pyphi-1.2.1/.pyproject-builddir + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_wheel.py /builddir/build/BUILD/pyphi-1.2.1/pyproject-wheeldir Processing /builddir/build/BUILD/pyphi-1.2.1 Preparing metadata (pyproject.toml): started Running command Preparing metadata (pyproject.toml) /usr/lib/python3.11/site-packages/setuptools/dist.py:755: SetuptoolsDeprecationWarning: Invalid dash-separated options !! ******************************************************************************** Usage of dash-separated 'upload-dir' will not be supported in future versions. Please use the underscore name 'upload_dir' instead. By 2023-Sep-26, you need to update your project and remove deprecated calls or your builds will no longer be supported. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self.warn_dash_deprecation(opt, section) running dist_info creating /builddir/build/BUILD/pyphi-1.2.1/.pyproject-builddir/pip-modern-metadata-s7r51eij/pyphi.egg-info writing /builddir/build/BUILD/pyphi-1.2.1/.pyproject-builddir/pip-modern-metadata-s7r51eij/pyphi.egg-info/PKG-INFO writing dependency_links to /builddir/build/BUILD/pyphi-1.2.1/.pyproject-builddir/pip-modern-metadata-s7r51eij/pyphi.egg-info/dependency_links.txt writing requirements to /builddir/build/BUILD/pyphi-1.2.1/.pyproject-builddir/pip-modern-metadata-s7r51eij/pyphi.egg-info/requires.txt writing top-level names to /builddir/build/BUILD/pyphi-1.2.1/.pyproject-builddir/pip-modern-metadata-s7r51eij/pyphi.egg-info/top_level.txt writing manifest file '/builddir/build/BUILD/pyphi-1.2.1/.pyproject-builddir/pip-modern-metadata-s7r51eij/pyphi.egg-info/SOURCES.txt' reading manifest file '/builddir/build/BUILD/pyphi-1.2.1/.pyproject-builddir/pip-modern-metadata-s7r51eij/pyphi.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.md' writing manifest file '/builddir/build/BUILD/pyphi-1.2.1/.pyproject-builddir/pip-modern-metadata-s7r51eij/pyphi.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/pyphi-1.2.1/.pyproject-builddir/pip-modern-metadata-s7r51eij/pyphi-1.2.1.dist-info' Preparing metadata (pyproject.toml): finished with status 'done' Building wheels for collected packages: pyphi Building wheel for pyphi (pyproject.toml): started Running command Building wheel for pyphi (pyproject.toml) /usr/lib/python3.11/site-packages/setuptools/dist.py:755: SetuptoolsDeprecationWarning: Invalid dash-separated options !! ******************************************************************************** Usage of dash-separated 'upload-dir' will not be supported in future versions. Please use the underscore name 'upload_dir' instead. By 2023-Sep-26, you need to update your project and remove deprecated calls or your builds will no longer be supported. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self.warn_dash_deprecation(opt, section) running bdist_wheel running build running build_py creating build creating build/lib creating build/lib/pyphi copying pyphi/__about__.py -> build/lib/pyphi copying pyphi/__init__.py -> build/lib/pyphi copying pyphi/actual.py -> build/lib/pyphi copying pyphi/cache.py -> build/lib/pyphi copying pyphi/conf.py -> build/lib/pyphi copying pyphi/connectivity.py -> build/lib/pyphi copying pyphi/constants.py -> build/lib/pyphi copying pyphi/convert.py -> build/lib/pyphi copying pyphi/direction.py -> build/lib/pyphi copying pyphi/distance.py -> build/lib/pyphi copying pyphi/distribution.py -> build/lib/pyphi copying pyphi/examples.py -> build/lib/pyphi copying pyphi/exceptions.py -> build/lib/pyphi copying pyphi/jsonify.py -> build/lib/pyphi copying pyphi/log.py -> build/lib/pyphi copying pyphi/macro.py -> build/lib/pyphi copying pyphi/memory.py -> build/lib/pyphi copying pyphi/network.py -> build/lib/pyphi copying pyphi/node.py -> build/lib/pyphi copying pyphi/partition.py -> build/lib/pyphi copying pyphi/subsystem.py -> build/lib/pyphi copying pyphi/timescale.py -> build/lib/pyphi copying pyphi/tpm.py -> build/lib/pyphi copying pyphi/utils.py -> build/lib/pyphi copying pyphi/validate.py -> build/lib/pyphi copying pyphi/db.py -> build/lib/pyphi copying pyphi/labels.py -> build/lib/pyphi copying pyphi/registry.py -> build/lib/pyphi creating build/lib/pyphi/models copying pyphi/models/__init__.py -> build/lib/pyphi/models copying pyphi/models/fmt.py -> build/lib/pyphi/models copying pyphi/models/mechanism.py -> build/lib/pyphi/models copying pyphi/models/actual_causation.py -> build/lib/pyphi/models copying pyphi/models/cmp.py -> build/lib/pyphi/models copying pyphi/models/cuts.py -> build/lib/pyphi/models copying pyphi/models/subsystem.py -> build/lib/pyphi/models creating build/lib/pyphi/compute copying pyphi/compute/__init__.py -> build/lib/pyphi/compute copying pyphi/compute/distance.py -> build/lib/pyphi/compute copying pyphi/compute/network.py -> build/lib/pyphi/compute copying pyphi/compute/parallel.py -> build/lib/pyphi/compute copying pyphi/compute/subsystem.py -> build/lib/pyphi/compute running egg_info writing pyphi.egg-info/PKG-INFO writing dependency_links to pyphi.egg-info/dependency_links.txt writing requirements to pyphi.egg-info/requires.txt writing top-level names to pyphi.egg-info/top_level.txt reading manifest file 'pyphi.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.md' writing manifest file 'pyphi.egg-info/SOURCES.txt' /usr/lib/python3.11/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'pyphi.data.hamming_matrices' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'pyphi.data.hamming_matrices' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'pyphi.data.hamming_matrices' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'pyphi.data.hamming_matrices' to be distributed and are already explicitly excluding 'pyphi.data.hamming_matrices' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3.11/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'pyphi.data.partition_lists' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'pyphi.data.partition_lists' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'pyphi.data.partition_lists' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'pyphi.data.partition_lists' to be distributed and are already explicitly excluding 'pyphi.data.partition_lists' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) creating build/lib/pyphi/data creating build/lib/pyphi/data/hamming_matrices copying pyphi/data/hamming_matrices/0.npy -> build/lib/pyphi/data/hamming_matrices copying pyphi/data/hamming_matrices/1.npy -> build/lib/pyphi/data/hamming_matrices copying pyphi/data/hamming_matrices/2.npy -> build/lib/pyphi/data/hamming_matrices copying pyphi/data/hamming_matrices/3.npy -> build/lib/pyphi/data/hamming_matrices copying pyphi/data/hamming_matrices/4.npy -> build/lib/pyphi/data/hamming_matrices copying pyphi/data/hamming_matrices/5.npy -> build/lib/pyphi/data/hamming_matrices copying pyphi/data/hamming_matrices/6.npy -> build/lib/pyphi/data/hamming_matrices copying pyphi/data/hamming_matrices/7.npy -> build/lib/pyphi/data/hamming_matrices copying pyphi/data/hamming_matrices/8.npy -> build/lib/pyphi/data/hamming_matrices copying pyphi/data/hamming_matrices/9.npy -> build/lib/pyphi/data/hamming_matrices creating build/lib/pyphi/data/partition_lists copying pyphi/data/partition_lists/0.npy -> build/lib/pyphi/data/partition_lists copying pyphi/data/partition_lists/1.npy -> build/lib/pyphi/data/partition_lists copying pyphi/data/partition_lists/2.npy -> build/lib/pyphi/data/partition_lists copying pyphi/data/partition_lists/3.npy -> build/lib/pyphi/data/partition_lists copying pyphi/data/partition_lists/4.npy -> build/lib/pyphi/data/partition_lists copying pyphi/data/partition_lists/5.npy -> build/lib/pyphi/data/partition_lists copying pyphi/data/partition_lists/6.npy -> build/lib/pyphi/data/partition_lists copying pyphi/data/partition_lists/7.npy -> build/lib/pyphi/data/partition_lists copying pyphi/data/partition_lists/8.npy -> build/lib/pyphi/data/partition_lists copying pyphi/data/partition_lists/9.npy -> build/lib/pyphi/data/partition_lists installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64 creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/pyphi creating build/bdist.linux-x86_64/wheel/pyphi/data creating build/bdist.linux-x86_64/wheel/pyphi/data/partition_lists copying build/lib/pyphi/data/partition_lists/9.npy -> build/bdist.linux-x86_64/wheel/pyphi/data/partition_lists copying build/lib/pyphi/data/partition_lists/8.npy -> build/bdist.linux-x86_64/wheel/pyphi/data/partition_lists copying build/lib/pyphi/data/partition_lists/7.npy -> build/bdist.linux-x86_64/wheel/pyphi/data/partition_lists copying build/lib/pyphi/data/partition_lists/6.npy -> build/bdist.linux-x86_64/wheel/pyphi/data/partition_lists copying build/lib/pyphi/data/partition_lists/5.npy -> build/bdist.linux-x86_64/wheel/pyphi/data/partition_lists copying build/lib/pyphi/data/partition_lists/4.npy -> build/bdist.linux-x86_64/wheel/pyphi/data/partition_lists copying build/lib/pyphi/data/partition_lists/3.npy -> build/bdist.linux-x86_64/wheel/pyphi/data/partition_lists copying build/lib/pyphi/data/partition_lists/2.npy -> build/bdist.linux-x86_64/wheel/pyphi/data/partition_lists copying build/lib/pyphi/data/partition_lists/1.npy -> build/bdist.linux-x86_64/wheel/pyphi/data/partition_lists copying build/lib/pyphi/data/partition_lists/0.npy -> build/bdist.linux-x86_64/wheel/pyphi/data/partition_lists creating build/bdist.linux-x86_64/wheel/pyphi/data/hamming_matrices copying build/lib/pyphi/data/hamming_matrices/9.npy -> build/bdist.linux-x86_64/wheel/pyphi/data/hamming_matrices copying build/lib/pyphi/data/hamming_matrices/8.npy -> build/bdist.linux-x86_64/wheel/pyphi/data/hamming_matrices copying build/lib/pyphi/data/hamming_matrices/7.npy -> build/bdist.linux-x86_64/wheel/pyphi/data/hamming_matrices copying build/lib/pyphi/data/hamming_matrices/6.npy -> build/bdist.linux-x86_64/wheel/pyphi/data/hamming_matrices copying build/lib/pyphi/data/hamming_matrices/5.npy -> build/bdist.linux-x86_64/wheel/pyphi/data/hamming_matrices copying build/lib/pyphi/data/hamming_matrices/4.npy -> build/bdist.linux-x86_64/wheel/pyphi/data/hamming_matrices copying build/lib/pyphi/data/hamming_matrices/3.npy -> build/bdist.linux-x86_64/wheel/pyphi/data/hamming_matrices copying build/lib/pyphi/data/hamming_matrices/2.npy -> build/bdist.linux-x86_64/wheel/pyphi/data/hamming_matrices copying build/lib/pyphi/data/hamming_matrices/1.npy -> build/bdist.linux-x86_64/wheel/pyphi/data/hamming_matrices copying build/lib/pyphi/data/hamming_matrices/0.npy -> build/bdist.linux-x86_64/wheel/pyphi/data/hamming_matrices creating build/bdist.linux-x86_64/wheel/pyphi/compute copying build/lib/pyphi/compute/subsystem.py -> build/bdist.linux-x86_64/wheel/pyphi/compute copying build/lib/pyphi/compute/parallel.py -> build/bdist.linux-x86_64/wheel/pyphi/compute copying build/lib/pyphi/compute/network.py -> build/bdist.linux-x86_64/wheel/pyphi/compute copying build/lib/pyphi/compute/distance.py -> build/bdist.linux-x86_64/wheel/pyphi/compute copying build/lib/pyphi/compute/__init__.py -> build/bdist.linux-x86_64/wheel/pyphi/compute creating build/bdist.linux-x86_64/wheel/pyphi/models copying build/lib/pyphi/models/subsystem.py -> build/bdist.linux-x86_64/wheel/pyphi/models copying build/lib/pyphi/models/cuts.py -> build/bdist.linux-x86_64/wheel/pyphi/models copying build/lib/pyphi/models/cmp.py -> build/bdist.linux-x86_64/wheel/pyphi/models copying build/lib/pyphi/models/actual_causation.py -> build/bdist.linux-x86_64/wheel/pyphi/models copying build/lib/pyphi/models/mechanism.py -> build/bdist.linux-x86_64/wheel/pyphi/models copying build/lib/pyphi/models/fmt.py -> build/bdist.linux-x86_64/wheel/pyphi/models copying build/lib/pyphi/models/__init__.py -> build/bdist.linux-x86_64/wheel/pyphi/models copying build/lib/pyphi/registry.py -> build/bdist.linux-x86_64/wheel/pyphi copying build/lib/pyphi/labels.py -> build/bdist.linux-x86_64/wheel/pyphi copying build/lib/pyphi/db.py -> build/bdist.linux-x86_64/wheel/pyphi copying build/lib/pyphi/validate.py -> build/bdist.linux-x86_64/wheel/pyphi copying build/lib/pyphi/utils.py -> build/bdist.linux-x86_64/wheel/pyphi copying build/lib/pyphi/tpm.py -> build/bdist.linux-x86_64/wheel/pyphi copying build/lib/pyphi/timescale.py -> build/bdist.linux-x86_64/wheel/pyphi copying build/lib/pyphi/subsystem.py -> build/bdist.linux-x86_64/wheel/pyphi copying build/lib/pyphi/partition.py -> build/bdist.linux-x86_64/wheel/pyphi copying build/lib/pyphi/node.py -> build/bdist.linux-x86_64/wheel/pyphi copying build/lib/pyphi/network.py -> build/bdist.linux-x86_64/wheel/pyphi copying build/lib/pyphi/memory.py -> build/bdist.linux-x86_64/wheel/pyphi copying build/lib/pyphi/macro.py -> build/bdist.linux-x86_64/wheel/pyphi copying build/lib/pyphi/log.py -> build/bdist.linux-x86_64/wheel/pyphi copying build/lib/pyphi/jsonify.py -> build/bdist.linux-x86_64/wheel/pyphi copying build/lib/pyphi/exceptions.py -> build/bdist.linux-x86_64/wheel/pyphi copying build/lib/pyphi/examples.py -> build/bdist.linux-x86_64/wheel/pyphi copying build/lib/pyphi/distribution.py -> build/bdist.linux-x86_64/wheel/pyphi copying build/lib/pyphi/distance.py -> build/bdist.linux-x86_64/wheel/pyphi copying build/lib/pyphi/direction.py -> build/bdist.linux-x86_64/wheel/pyphi copying build/lib/pyphi/convert.py -> build/bdist.linux-x86_64/wheel/pyphi copying build/lib/pyphi/constants.py -> build/bdist.linux-x86_64/wheel/pyphi copying build/lib/pyphi/connectivity.py -> build/bdist.linux-x86_64/wheel/pyphi copying build/lib/pyphi/conf.py -> build/bdist.linux-x86_64/wheel/pyphi copying build/lib/pyphi/cache.py -> build/bdist.linux-x86_64/wheel/pyphi copying build/lib/pyphi/actual.py -> build/bdist.linux-x86_64/wheel/pyphi copying build/lib/pyphi/__init__.py -> build/bdist.linux-x86_64/wheel/pyphi copying build/lib/pyphi/__about__.py -> build/bdist.linux-x86_64/wheel/pyphi running install_egg_info Copying pyphi.egg-info to build/bdist.linux-x86_64/wheel/pyphi-1.2.1-py3.11.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/pyphi-1.2.1.dist-info/WHEEL creating '/builddir/build/BUILD/pyphi-1.2.1/.pyproject-builddir/pip-wheel-v1utqn6c/.tmp-50zx_yhm/pyphi-1.2.1-py3-none-any.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'pyphi/__about__.py' adding 'pyphi/__init__.py' adding 'pyphi/actual.py' adding 'pyphi/cache.py' adding 'pyphi/conf.py' adding 'pyphi/connectivity.py' adding 'pyphi/constants.py' adding 'pyphi/convert.py' adding 'pyphi/db.py' adding 'pyphi/direction.py' adding 'pyphi/distance.py' adding 'pyphi/distribution.py' adding 'pyphi/examples.py' adding 'pyphi/exceptions.py' adding 'pyphi/jsonify.py' adding 'pyphi/labels.py' adding 'pyphi/log.py' adding 'pyphi/macro.py' adding 'pyphi/memory.py' adding 'pyphi/network.py' adding 'pyphi/node.py' adding 'pyphi/partition.py' adding 'pyphi/registry.py' adding 'pyphi/subsystem.py' adding 'pyphi/timescale.py' adding 'pyphi/tpm.py' adding 'pyphi/utils.py' adding 'pyphi/validate.py' adding 'pyphi/compute/__init__.py' adding 'pyphi/compute/distance.py' adding 'pyphi/compute/network.py' adding 'pyphi/compute/parallel.py' adding 'pyphi/compute/subsystem.py' adding 'pyphi/data/hamming_matrices/0.npy' adding 'pyphi/data/hamming_matrices/1.npy' adding 'pyphi/data/hamming_matrices/2.npy' adding 'pyphi/data/hamming_matrices/3.npy' adding 'pyphi/data/hamming_matrices/4.npy' adding 'pyphi/data/hamming_matrices/5.npy' adding 'pyphi/data/hamming_matrices/6.npy' adding 'pyphi/data/hamming_matrices/7.npy' adding 'pyphi/data/hamming_matrices/8.npy' adding 'pyphi/data/hamming_matrices/9.npy' adding 'pyphi/data/partition_lists/0.npy' adding 'pyphi/data/partition_lists/1.npy' adding 'pyphi/data/partition_lists/2.npy' adding 'pyphi/data/partition_lists/3.npy' adding 'pyphi/data/partition_lists/4.npy' adding 'pyphi/data/partition_lists/5.npy' adding 'pyphi/data/partition_lists/6.npy' adding 'pyphi/data/partition_lists/7.npy' adding 'pyphi/data/partition_lists/8.npy' adding 'pyphi/data/partition_lists/9.npy' adding 'pyphi/models/__init__.py' adding 'pyphi/models/actual_causation.py' adding 'pyphi/models/cmp.py' adding 'pyphi/models/cuts.py' adding 'pyphi/models/fmt.py' adding 'pyphi/models/mechanism.py' adding 'pyphi/models/subsystem.py' adding 'pyphi-1.2.1.dist-info/LICENSE.md' adding 'pyphi-1.2.1.dist-info/METADATA' adding 'pyphi-1.2.1.dist-info/WHEEL' adding 'pyphi-1.2.1.dist-info/top_level.txt' adding 'pyphi-1.2.1.dist-info/RECORD' removing build/bdist.linux-x86_64/wheel Building wheel for pyphi (pyproject.toml): finished with status 'done' Created wheel for pyphi: filename=pyphi-1.2.1-py3-none-any.whl size=618930 sha256=a6e73d4916fb1db8fa23ef42bdb5f008469db912e930d204d0bd239fd182266b Stored in directory: /builddir/.cache/pip/wheels/70/eb/71/e4387c68bac1c6e3b9aa93b3527f93ee1d7feda9d35e1d177b Successfully built pyphi + /usr/bin/make -O -j2 V=1 VERBOSE=1 -C docs latex SPHINXOPTS=-j2 make: Entering directory '/builddir/build/BUILD/pyphi-1.2.1/docs' sphinx-build -b latex -d _build/doctrees -j2 . _build/latex Running Sphinx v6.1.3 Welcome to PyPhi! If you use PyPhi in your research, please cite the paper: Mayner WGP, Marshall W, Albantakis L, Findlay G, Marchman R, Tononi G. (2018). PyPhi: A toolbox for integrated information theory. PLOS Computational Biology 14(7): e1006343. https://doi.org/10.1371/journal.pcbi.1006343 Documentation is available online (or with the built-in `help()` function): https://pyphi.readthedocs.io To report issues, please use the issue tracker on the GitHub repository: https://github.com/wmayner/pyphi For general discussion, you are welcome to join the pyphi-users group: https://groups.google.com/forum/#!forum/pyphi-users To suppress this message, either: - Set `WELCOME_OFF: true` in your `pyphi_config.yml` file, or - Set the environment variable PYPHI_WELCOME_OFF to any value in your shell: export PYPHI_WELCOME_OFF='yes' making output directory... done building [mo]: targets for 0 po files that are out of date writing output... building [latex]: all documents updating environment: [new config] 45 added, 0 changed, 0 removed reading sources... [ 33%] api/actual .. api/examples reading sources... [ 66%] api/exceptions .. api/utils reading sources... [100%] api/validate .. macos_installation looking for now-outdated files... none found pickling environment... done checking consistency... done processing PyPhi.tex... index installation examples/index examples/2014paper examples/conditional_independence examples/xor examples/emergence examples/actual_causation examples/residue examples/magic_cut macos_installation conventions configuration caching api/actual api/cache api/compute api/compute.distance api/compute.network api/compute.parallel api/compute.subsystem api/conf api/connectivity api/constants api/convert api/direction api/distance api/distribution api/examples api/exceptions api/jsonify api/macro api/models api/models.actual_causation api/models.cuts api/models.mechanism api/models.subsystem api/network api/node api/partition api/subsystem api/timescale api/tpm api/utils api/validate resolving references... done writing... done copying images... [100%] _static/connectivity-matrix-example-network.png copying TeX support files... copying TeX support files... done build succeeded, 7 warnings. The LaTeX files are in _build/latex. Run 'make' in that directory to run these through (pdf)latex (use `make latexpdf' here to do that automatically). Build finished; the LaTeX files are in _build/latex. Run `make' in that directory to run these through (pdf)latex (use `make latexpdf' here to do that automatically). /builddir/build/BUILD/pyphi-1.2.1/pyphi/macro.py:docstring of pyphi.macro.MacroNetwork.emergence:1: WARNING: duplicate object description of pyphi.macro.MacroNetwork.emergence, other instance in api/macro, use :noindex: for one of them /builddir/build/BUILD/pyphi-1.2.1/pyphi/models/cuts.py:docstring of pyphi.models.cuts.Cut.from_nodes:1: WARNING: duplicate object description of pyphi.models.cuts.Cut.from_nodes, other instance in api/models.cuts, use :noindex: for one of them /builddir/build/BUILD/pyphi-1.2.1/pyphi/models/cuts.py:docstring of pyphi.models.cuts.Cut.to_nodes:1: WARNING: duplicate object description of pyphi.models.cuts.Cut.to_nodes, other instance in api/models.cuts, use :noindex: for one of them /builddir/build/BUILD/pyphi-1.2.1/pyphi/actual.py:docstring of pyphi.actual.Transition:67: WARNING: duplicate object description of pyphi.actual.Transition.cause_system, other instance in api/actual, use :noindex: for one of them /builddir/build/BUILD/pyphi-1.2.1/pyphi/actual.py:docstring of pyphi.actual.true_events:1: WARNING: more than one target found for cross-reference 'AcSystemIrreducibilityAnalysis': pyphi.models.AcSystemIrreducibilityAnalysis, pyphi.models.actual_causation.AcSystemIrreducibilityAnalysis /builddir/build/BUILD/pyphi-1.2.1/pyphi/actual.py:docstring of pyphi.actual.extrinsic_events:1: WARNING: more than one target found for cross-reference 'AcSystemIrreducibilityAnalysis': pyphi.models.AcSystemIrreducibilityAnalysis, pyphi.models.actual_causation.AcSystemIrreducibilityAnalysis /builddir/build/BUILD/pyphi-1.2.1/pyphi/subsystem.py:docstring of pyphi.subsystem.Subsystem:1: WARNING: more than one target found for cross-reference 'Cut': pyphi.models.Cut, pyphi.models.cuts.Cut make: Leaving directory '/builddir/build/BUILD/pyphi-1.2.1/docs' + /usr/bin/make -O -j2 V=1 VERBOSE=1 -C docs/_build/latex LATEXMKOPTS=-quiet make: Entering directory '/builddir/build/BUILD/pyphi-1.2.1/docs/_build/latex' latexmk -pdf -dvi- -ps- -quiet 'PyPhi.tex' Rc files read: /etc/latexmkrc latexmkrc Latexmk: Run number 1 of rule 'pdflatex' This is XeTeX, Version 3.141592653-2.6-0.999995 (TeX Live 2023) (preloaded format=xelatex) restricted \write18 enabled. entering extended mode Latexmk: Getting log file 'PyPhi.log' Latexmk: Run number 1 of rule 'makeindex PyPhi.idx' Latexmk: Run number 2 of rule 'pdflatex' This is XeTeX, Version 3.141592653-2.6-0.999995 (TeX Live 2023) (preloaded format=xelatex) restricted \write18 enabled. entering extended mode Latexmk: Getting log file 'PyPhi.log' Latexmk: Run number 3 of rule 'pdflatex' This is XeTeX, Version 3.141592653-2.6-0.999995 (TeX Live 2023) (preloaded format=xelatex) restricted \write18 enabled. entering extended mode Latexmk: Getting log file 'PyPhi.log' Latexmk: Summary of warnings from last run of *latex: Latex failed to resolve 1 reference(s) =====Latex reported missing or unavailable character(s). =====See log file for details. Latexmk: ====List of undefined refs and citations: Missing character: There is no ➤ (U+27A4) in font [FreeMono.otf]/OT:script=latn;language=dflt;! Missing character: There is no ➤ (U+27A4) in font [FreeMono.otf]/OT:script=latn;language=dflt;! Reference `!!Some radii options for box corners used; they were ignored as pict2e was not found' on page 157 undefined on input line 19786 make: Leaving directory '/builddir/build/BUILD/pyphi-1.2.1/docs/_build/latex' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.BeEpU5 + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/python-pyphi-1.2.1-17.fc39.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/python-pyphi-1.2.1-17.fc39.x86_64 ++ dirname /builddir/build/BUILDROOT/python-pyphi-1.2.1-17.fc39.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/python-pyphi-1.2.1-17.fc39.x86_64 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd pyphi-1.2.1 ++ ls /builddir/build/BUILD/pyphi-1.2.1/pyproject-wheeldir/pyphi-1.2.1-py3-none-any.whl ++ xargs basename --multiple ++ sed -E 's/([^-]+)-([^-]+)-.+\.whl/\1==\2/' + specifier=pyphi==1.2.1 + TMPDIR=/builddir/build/BUILD/pyphi-1.2.1/.pyproject-builddir + /usr/bin/python3 -m pip install --root /builddir/build/BUILDROOT/python-pyphi-1.2.1-17.fc39.x86_64 --prefix /usr --no-deps --disable-pip-version-check --progress-bar off --verbose --ignore-installed --no-warn-script-location --no-index --no-cache-dir --find-links /builddir/build/BUILD/pyphi-1.2.1/pyproject-wheeldir pyphi==1.2.1 Using pip 23.1.2 from /usr/lib/python3.11/site-packages/pip (python 3.11) Looking in links: /builddir/build/BUILD/pyphi-1.2.1/pyproject-wheeldir Processing ./pyproject-wheeldir/pyphi-1.2.1-py3-none-any.whl Installing collected packages: pyphi Successfully installed pyphi-1.2.1 + '[' -d /builddir/build/BUILDROOT/python-pyphi-1.2.1-17.fc39.x86_64/usr/bin ']' + rm -f /builddir/build/BUILD/python-pyphi-1.2.1-17.fc39.x86_64-pyproject-ghost-distinfo + site_dirs=() + '[' -d /builddir/build/BUILDROOT/python-pyphi-1.2.1-17.fc39.x86_64/usr/lib/python3.11/site-packages ']' + site_dirs+=("/usr/lib/python3.11/site-packages") + '[' /builddir/build/BUILDROOT/python-pyphi-1.2.1-17.fc39.x86_64/usr/lib64/python3.11/site-packages '!=' /builddir/build/BUILDROOT/python-pyphi-1.2.1-17.fc39.x86_64/usr/lib/python3.11/site-packages ']' + '[' -d /builddir/build/BUILDROOT/python-pyphi-1.2.1-17.fc39.x86_64/usr/lib64/python3.11/site-packages ']' + for site_dir in ${site_dirs[@]} + for distinfo in /builddir/build/BUILDROOT/python-pyphi-1.2.1-17.fc39.x86_64$site_dir/*.dist-info + echo '%ghost /usr/lib/python3.11/site-packages/pyphi-1.2.1.dist-info' + sed -i s/pip/rpm/ /builddir/build/BUILDROOT/python-pyphi-1.2.1-17.fc39.x86_64/usr/lib/python3.11/site-packages/pyphi-1.2.1.dist-info/INSTALLER + PYTHONPATH=/usr/lib/rpm/redhat + /usr/bin/python3 -B /usr/lib/rpm/redhat/pyproject_preprocess_record.py --buildroot /builddir/build/BUILDROOT/python-pyphi-1.2.1-17.fc39.x86_64 --record /builddir/build/BUILDROOT/python-pyphi-1.2.1-17.fc39.x86_64/usr/lib/python3.11/site-packages/pyphi-1.2.1.dist-info/RECORD --output /builddir/build/BUILD/python-pyphi-1.2.1-17.fc39.x86_64-pyproject-record + rm -fv /builddir/build/BUILDROOT/python-pyphi-1.2.1-17.fc39.x86_64/usr/lib/python3.11/site-packages/pyphi-1.2.1.dist-info/RECORD removed '/builddir/build/BUILDROOT/python-pyphi-1.2.1-17.fc39.x86_64/usr/lib/python3.11/site-packages/pyphi-1.2.1.dist-info/RECORD' + rm -fv /builddir/build/BUILDROOT/python-pyphi-1.2.1-17.fc39.x86_64/usr/lib/python3.11/site-packages/pyphi-1.2.1.dist-info/REQUESTED removed '/builddir/build/BUILDROOT/python-pyphi-1.2.1-17.fc39.x86_64/usr/lib/python3.11/site-packages/pyphi-1.2.1.dist-info/REQUESTED' ++ wc -l /builddir/build/BUILD/python-pyphi-1.2.1-17.fc39.x86_64-pyproject-ghost-distinfo ++ cut -f1 '-d ' + lines=1 + '[' 1 -ne 1 ']' + RPM_PERCENTAGES_COUNT=2 + /usr/bin/python3 /usr/lib/rpm/redhat/pyproject_save_files.py --output-files /builddir/build/BUILD/python-pyphi-1.2.1-17.fc39.x86_64-pyproject-files --output-modules /builddir/build/BUILD/python-pyphi-1.2.1-17.fc39.x86_64-pyproject-modules --buildroot /builddir/build/BUILDROOT/python-pyphi-1.2.1-17.fc39.x86_64 --sitelib /usr/lib/python3.11/site-packages --sitearch /usr/lib64/python3.11/site-packages --python-version 3.11 --pyproject-record /builddir/build/BUILD/python-pyphi-1.2.1-17.fc39.x86_64-pyproject-record --prefix /usr pyphi + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/brp-strip /usr/bin/strip + /usr/lib/rpm/brp-strip-comment-note /usr/bin/strip /usr/bin/objdump + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2 Bytecompiling .py files below /builddir/build/BUILDROOT/python-pyphi-1.2.1-17.fc39.x86_64/usr/lib/python3.11 using python3.11 + /usr/lib/rpm/redhat/brp-python-hardlink Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.9T44cz + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd pyphi-1.2.1 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + PATH=/builddir/build/BUILDROOT/python-pyphi-1.2.1-17.fc39.x86_64/usr/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin + PYTHONPATH=/builddir/build/BUILDROOT/python-pyphi-1.2.1-17.fc39.x86_64/usr/lib64/python3.11/site-packages:/builddir/build/BUILDROOT/python-pyphi-1.2.1-17.fc39.x86_64/usr/lib/python3.11/site-packages + PYTHONDONTWRITEBYTECODE=1 + PYTEST_ADDOPTS=' --ignore=/builddir/build/BUILD/pyphi-1.2.1/.pyproject-builddir' + PYTEST_XDIST_AUTO_NUM_WORKERS=2 + /usr/bin/pytest ============================= test session starts ============================== platform linux -- Python 3.11.3, pytest-7.3.2, pluggy-1.0.0 -- /usr/bin/python3 cachedir: .pytest_cache rootdir: /builddir/build/BUILD/pyphi-1.2.1 configfile: pytest.ini plugins: lazy-fixture-0.6.3 collecting ... collected 578 items docs/conventions.rst::conventions.rst PASSED [ 0%] docs/examples/2014paper.rst::2014paper.rst PASSED [ 0%] docs/examples/actual_causation.rst::actual_causation.rst PASSED [ 0%] docs/examples/conditional_independence.rst::conditional_independence.rst PASSED [ 0%] docs/examples/emergence.rst::emergence.rst PASSED [ 0%] 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pyphi/distribution.py::pyphi.distribution.repertoire_shape PASSED [ 3%] pyphi/labels.py::pyphi.labels.NodeLabels PASSED [ 3%] pyphi/macro.py::pyphi.macro.Blackbox.reindex PASSED [ 4%] pyphi/macro.py::pyphi.macro.CoarseGrain.macro_state PASSED [ 4%] pyphi/macro.py::pyphi.macro.CoarseGrain.reindex PASSED [ 4%] pyphi/macro.py::pyphi.macro._partitions_list PASSED [ 4%] pyphi/partition.py::pyphi.partition.PartitionRegistry SKIPPED (all tests skipped by +SKIP option) [ 4%] pyphi/partition.py::pyphi.partition.bipartition PASSED [ 5%] pyphi/partition.py::pyphi.partition.bipartition_indices PASSED [ 5%] pyphi/partition.py::pyphi.partition.directed_bipartition PASSED [ 5%] pyphi/partition.py::pyphi.partition.directed_bipartition_indices PASSED [ 5%] pyphi/partition.py::pyphi.partition.directed_bipartition_of_one PASSED [ 5%] pyphi/partition.py::pyphi.partition.directed_tripartition PASSED [ 5%] pyphi/partition.py::pyphi.partition.directed_tripartition_indices PASSED [ 6%] 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test/test_actual.py::test_background_conditions[background_all_on-CAUSE-mechanism3-purview3-0] PASSED [ 8%] test/test_actual.py::test_background_noised PASSED [ 8%] test/test_actual.py::test_background_3_node[before_state0-purview0-0.0] PASSED [ 8%] test/test_actual.py::test_background_3_node[before_state1-purview1-1.0] PASSED [ 8%] test/test_actual.py::test_potential_purviews PASSED [ 9%] test/test_actual.py::test_transition_initialization PASSED [ 9%] test/test_actual.py::test_purview_state PASSED [ 9%] test/test_actual.py::test_mechanism_state PASSED [ 9%] test/test_actual.py::test_mechanism_indices PASSED [ 9%] test/test_actual.py::test_purview_indices PASSED [ 10%] test/test_actual.py::test_system_dict PASSED [ 10%] test/test_actual.py::test_transition_len PASSED [ 10%] test/test_actual.py::test_transition_bool PASSED [ 10%] test/test_actual.py::test_transition_equal PASSED [ 10%] test/test_actual.py::test_transition_apply_cut PASSED [ 10%] test/test_actual.py::test_to_json PASSED [ 11%] test/test_actual.py::test_acria_ordering PASSED [ 11%] test/test_actual.py::test_acria_hash PASSED [ 11%] test/test_actual.py::test_acria_phi_alias PASSED [ 11%] test/test_actual.py::test_causal_link_ordering PASSED [ 11%] test/test_actual.py::test_account_irreducible_causes_and_effects PASSED [ 11%] test/test_actual.py::test_account_repr_and_str PASSED [ 12%] test/test_actual.py::test_account_addition PASSED [ 12%] test/test_actual.py::test_ac_sia_repr_and_str PASSED [ 12%] test/test_actual.py::test_ac_sia_ordering PASSED [ 12%] test/test_actual.py::test_repertoires[CAUSE-mechanism0-purview0-repertoire0] PASSED [ 12%] test/test_actual.py::test_repertoires[CAUSE-mechanism1-purview1-repertoire1] PASSED [ 12%] test/test_actual.py::test_repertoires[CAUSE-mechanism2-purview2-repertoire2] PASSED [ 13%] test/test_actual.py::test_repertoires[EFFECT-mechanism3-purview3-repertoire3] PASSED [ 13%] test/test_actual.py::test_repertoires[EFFECT-mechanism4-purview4-repertoire4] PASSED [ 13%] test/test_actual.py::test_repertoires[EFFECT-mechanism5-purview5-repertoire5] PASSED [ 13%] test/test_actual.py::test_invalid_repertoires PASSED [ 13%] test/test_actual.py::test_unconstrained_repertoires PASSED [ 14%] test/test_actual.py::test_probability[CAUSE-mechanism0-purview0-0.66666667] PASSED [ 14%] test/test_actual.py::test_probability[CAUSE-mechanism1-purview1-0.66666667] PASSED [ 14%] test/test_actual.py::test_probability[CAUSE-mechanism2-purview2-0.3333333] PASSED [ 14%] test/test_actual.py::test_probability[EFFECT-mechanism3-purview3-1] PASSED [ 14%] test/test_actual.py::test_probability[EFFECT-mechanism4-purview4-1] PASSED [ 14%] test/test_actual.py::test_probability[EFFECT-mechanism5-purview5-1] PASSED [ 15%] test/test_actual.py::test_unconstrained_probability PASSED [ 15%] test/test_actual.py::test_cause_ratio[mechanism0-purview0-0.41504] PASSED [ 15%] test/test_actual.py::test_cause_ratio[mechanism1-purview1-0.41504] PASSED [ 15%] test/test_actual.py::test_cause_ratio[mechanism2-purview2-0.41504] PASSED [ 15%] test/test_actual.py::test_effect_ratio[mechanism0-purview0-0.41504] PASSED [ 15%] test/test_actual.py::test_effect_ratio[mechanism1-purview1-0.41504] PASSED [ 16%] test/test_actual.py::test_effect_ratio[mechanism2-purview2-0.41504] PASSED [ 16%] test/test_actual.py::test_ac_ex1_transition PASSED [ 16%] test/test_actual.py::test_actual_cut_indices PASSED [ 16%] test/test_actual.py::test_actual_apply_cut PASSED [ 16%] test/test_actual.py::test_actual_cut_matrix PASSED [ 16%] test/test_actual.py::test_get_actual_cuts[BIDIRECTIONAL-answer0] PASSED [ 17%] test/test_actual.py::test_get_actual_cuts[CAUSE-answer1] PASSED [ 17%] test/test_actual.py::test_get_actual_cuts[EFFECT-answer2] PASSED [ 17%] test/test_actual.py::test_sia PASSED [ 17%] test/test_actual.py::test_null_ac_sia PASSED [ 17%] test/test_actual.py::test_prevention PASSED [ 17%] test/test_actual.py::test_causal_nexus PASSED [ 18%] test/test_actual.py::test_true_events PASSED [ 18%] test/test_actual.py::test_true_ces PASSED [ 18%] test/test_actual.py::test_extrinsic_events PASSED [ 18%] test/test_big_phi.py::test_sia_cache_key_includes_config_dependencies PASSED [ 18%] test/test_big_phi.py::test_clear_subsystem_caches_after_computing_sia_config_option PASSED [ 19%] test/test_big_phi.py::test_conceptual_info PASSED [ 19%] test/test_big_phi.py::test_sia_empty_subsystem PASSED [ 19%] test/test_big_phi.py::test_sia_disconnected_network PASSED [ 19%] test/test_big_phi.py::test_sia_wrappers PASSED [ 19%] test/test_big_phi.py::test_sia_single_micro_node_selfloops_have_phi PASSED [ 19%] test/test_big_phi.py::test_sia_single_micro_node_selfloops_dont_have_phi PASSED [ 20%] test/test_big_phi.py::test_sia_single_micro_nodes_without_selfloops_dont_have_phi PASSED [ 20%] test/test_big_phi.py::test_find_sia_sequential_standard_example PASSED [ 20%] test/test_big_phi.py::test_find_sia_parallel_standard_example PASSED [ 20%] 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test/test_big_phi.py::test_sia_big_network_0_thru_3 PASSED [ 23%] test/test_big_phi.py::test_sia_rule152 SKIPPED (need --slow option to run) [ 23%] test/test_big_phi.py::test_rule152_complexes_no_caching SKIPPED (need --veryslow option to run) [ 23%] test/test_big_phi.py::test_sia_macro PASSED [ 23%] test/test_big_phi.py::test_sia_bipartitions PASSED [ 23%] test/test_big_phi.py::test_system_cut_styles PASSED [ 23%] test/test_cache.py::test_cache PASSED [ 24%] test/test_cache.py::test_cache_decorator PASSED [ 24%] test/test_cache.py::test_cache_key_generation PASSED [ 24%] test/test_cache.py::test_cache_repertoires_config_option PASSED [ 24%] test/test_cache.py::test_redis_singleton_connection SKIPPED (requires a running Redis server) [ 24%] test/test_cache.py::test_redis_cache_info SKIPPED (requires a running Redis server) [ 24%] test/test_cache.py::test_use_redis_mice_cache SKIPPED (requires a running Redis server) [ 25%] test/test_cache.py::test_redis_cache_sharing_between_processes SKIPPED (requires a running Redis server) [ 25%] test/test_cache.py::test_use_dict_mice_cache PASSED [ 25%] test/test_cache.py::test_mice_cache_keys PASSED [ 25%] test/test_cache.py::test_mice_cache[True] SKIPPED (requires a running Redis server) [ 25%] test/test_cache.py::test_mice_cache[False] PASSED [ 25%] test/test_cache.py::test_do_not_cache_phi_zero_mice PASSED [ 26%] test/test_cache.py::test_only_cache_uncut_subsystem_mices[True] SKIPPED (requires a running Redis server) [ 26%] test/test_cache.py::test_only_cache_uncut_subsystem_mices[False] PASSED [ 26%] test/test_cache.py::test_split_mechanism_mice_is_not_reusable[True] SKIPPED (requires a running Redis server) [ 26%] test/test_cache.py::test_split_mechanism_mice_is_not_reusable[False] PASSED [ 26%] test/test_cache.py::test_cut_relevant_connections_mice_is_not_reusable[True] SKIPPED (requires a running Redis server) [ 26%] test/test_cache.py::test_cut_relevant_connections_mice_is_not_reusable[False] PASSED [ 27%] test/test_cache.py::test_inherited_mice_cache_keeps_unaffected_mice[True] SKIPPED (requires a running Redis server) [ 27%] test/test_cache.py::test_inherited_mice_cache_keeps_unaffected_mice[False] PASSED [ 27%] test/test_cache.py::test_inherited_cache_must_come_from_uncut_subsystem[True] SKIPPED (requires a running Redis server) [ 27%] test/test_cache.py::test_inherited_cache_must_come_from_uncut_subsystem[False] PASSED [ 27%] test/test_cache.py::test_mice_cache_respects_cache_memory_limits PASSED [ 28%] test/test_cache.py::test_purview_cache PASSED [ 28%] test/test_cache.py::test_only_cache_purviews_if_configured PASSED [ 28%] test/test_ces.py::test_ces_distance_uses_simple_vs_emd PASSED [ 28%] test/test_ces.py::test_ces_distance_switches_to_small_phi_difference PASSED [ 28%] test/test_ces.py::test_parallel_and_sequential_ces_are_equal PASSED [ 28%] test/test_ces.py::test_ces_concepts_share_the_same_subsystem[False] PASSED [ 29%] test/test_ces.py::test_ces_concepts_share_the_same_subsystem[True] PASSED [ 29%] test/test_concept_style_cuts.py::test_cut_indices PASSED [ 29%] test/test_concept_style_cuts.py::test_apply_cut PASSED [ 29%] test/test_concept_style_cuts.py::test_cut_matrix PASSED [ 29%] test/test_concept_style_cuts.py::test_splits_mechanism PASSED [ 29%] test/test_concept_style_cuts.py::test_all_cut_mechanisms PASSED [ 30%] test/test_concept_style_cuts.py::test_concept_style_cuts PASSED [ 30%] test/test_concept_style_cuts.py::test_kcut_equality PASSED [ 30%] test/test_concept_style_cuts.py::test_system_accessors PASSED [ 30%] test/test_concept_style_cuts.py::test_sia_concept_style_ordering PASSED [ 30%] test/test_concept_style_cuts.py::test_sia_concept_style PASSED [ 30%] test/test_concept_style_cuts.py::test_unpickle PASSED [ 31%] test/test_concept_style_cuts.py::test_concept_style_phi PASSED [ 31%] test/test_config.py::test_iter PASSED [ 31%] test/test_config.py::test_load_dict PASSED [ 31%] test/test_config.py::test_snapshot PASSED [ 31%] test/test_config.py::test_load_file PASSED [ 32%] test/test_config.py::test_str PASSED [ 32%] test/test_config.py::test_override PASSED [ 32%] test/test_config.py::test_override_cleans_up_after_exception PASSED [ 32%] test/test_config.py::test_override_is_a_context_manager PASSED [ 32%] test/test_config.py::test_option_descriptor PASSED [ 32%] test/test_config.py::test_defaults PASSED [ 33%] test/test_config.py::test_only_set_public__attributes_that_are_options PASSED [ 33%] test/test_config.py::test_can_set_private_attributes PASSED [ 33%] test/test_config.py::test_on_change PASSED [ 33%] test/test_config.py::test_reconfigure_logging_on_change PASSED [ 33%] test/test_config.py::test_reconfigure_precision_on_change PASSED [ 33%] test/test_config.py::test_reconfigure_joblib_on_change PASSED [ 34%] test/test_config.py::test_config_validation[SYSTEM_CUTS-valid0-invalid0] PASSED [ 34%] test/test_config.py::test_config_validation[REPR_VERBOSITY-valid1-invalid1] PASSED [ 34%] test/test_connectivity.py::test_get_inputs_from_cm PASSED [ 34%] test/test_connectivity.py::test_get_outputs_from_cm PASSED [ 34%] test/test_connectivity.py::test_causally_significant_nodes PASSED [ 34%] test/test_connectivity.py::test_relevant_connections PASSED [ 35%] test/test_connectivity.py::test_block_cm PASSED [ 35%] test/test_connectivity.py::test_block_reducible PASSED [ 35%] test/test_connectivity.py::test_is_strong PASSED [ 35%] test/test_connectivity.py::test_is_full PASSED [ 35%] test/test_connectivity.py::test_apply_boundary_conditions PASSED [ 35%] test/test_convert.py::test_le_index2state PASSED [ 36%] test/test_convert.py::test_be_index2state PASSED [ 36%] test/test_convert.py::test_to_multidimensional PASSED [ 36%] test/test_convert.py::test_to_2dimensional PASSED [ 36%] test/test_convert.py::test_state_by_state2state_by_node PASSED [ 36%] test/test_convert.py::test_state_by_node2state_by_state PASSED [ 37%] test/test_convert.py::test_nondet_state_by_node2state_by_state PASSED [ 37%] test/test_convert.py::test_nondet_state_by_state2state_by_node PASSED [ 37%] test/test_convert.py::test_2_d_state_by_node2state_by_state PASSED [ 37%] test/test_convert.py::test_n_d_state_by_node2state_by_state PASSED [ 37%] test/test_direction.py::test_direction_order PASSED [ 37%] test/test_direction.py::test_direction_json[CAUSE-json_dict0] PASSED [ 38%] test/test_direction.py::test_direction_json[EFFECT-json_dict1] PASSED [ 38%] test/test_direction.py::test_direction_json[BIDIRECTIONAL-json_dict2] PASSED [ 38%] test/test_direction.py::test_direction_str PASSED [ 38%] test/test_distance.py::test_hamming_matrix PASSED [ 38%] test/test_distance.py::test_large_hamming_matrix PASSED [ 38%] test/test_distance.py::test_emd_same_distributions PASSED [ 39%] test/test_distance.py::test_emd_validates_distribution_shapes PASSED [ 39%] test/test_distance.py::test_l1_distance PASSED [ 39%] test/test_distance.py::test_entropy_difference PASSED [ 39%] test/test_distance.py::test_kld PASSED [ 39%] test/test_distance.py::test_psq2 PASSED [ 39%] test/test_distance.py::test_mp2q PASSED [ 40%] test/test_distance.py::test_klm PASSED [ 40%] test/test_distance.py::test_default_measures PASSED [ 40%] test/test_distance.py::test_default_asymmetric_measures PASSED [ 40%] test/test_distance.py::test_system_repertoire_distance_must_be_symmetric PASSED [ 40%] test/test_distance.py::test_suppress_np_warnings PASSED [ 41%] test/test_distribution.py::test_normalize PASSED [ 41%] test/test_distribution.py::test_uniform_distribution PASSED [ 41%] test/test_distribution.py::test_purview_max_entropy_distribution PASSED [ 41%] test/test_distribution.py::test_marginal_zero PASSED [ 41%] test/test_distribution.py::test_marginal PASSED [ 41%] test/test_distribution.py::test_independent PASSED [ 42%] test/test_distribution.py::test_purview_size PASSED [ 42%] test/test_distribution.py::test_purview PASSED [ 42%] test/test_distribution.py::test_repertoire_shape PASSED [ 42%] test/test_distribution.py::test_flatten PASSED [ 42%] test/test_json.py::test_jsonify_native PASSED [ 42%] test/test_json.py::test_jsonify_numpy PASSED [ 43%] test/test_json.py::test_json_deserialization PASSED [ 43%] test/test_json.py::test_json_deserialization_non_pyphi_clasess PASSED [ 43%] test/test_json.py::test_deserialization_memoizes_duplicate_objects PASSED [ 43%] test/test_json.py::test_load PASSED [ 43%] test/test_json.py::test_network_from_json PASSED [ 43%] test/test_json.py::test_version_check_during_deserialization PASSED [ 44%] test/test_labels.py::test_defaults PASSED [ 44%] test/test_labels.py::test_labels2indices PASSED [ 44%] test/test_labels.py::test_indices2labels PASSED [ 44%] test/test_labels.py::test_coerce_to_indices PASSED [ 44%] test/test_labels.py::test_iterable PASSED [ 44%] test/test_labels.py::test_len PASSED [ 45%] 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test/test_macro_subsystem.py::test_blackbox_external PASSED [ 53%] test/test_macro_subsystem.py::test_coarse_grain PASSED [ 53%] test/test_macro_subsystem.py::test_blackbox_and_coarse_grain XFAIL [ 53%] test/test_macro_subsystem.py::test_blackbox_and_coarse_grain_external PASSED [ 53%] test/test_macro_subsystem.py::test_blackbox_emergence SKIPPED (need --veryslow option to run) [ 53%] test/test_macro_subsystem.py::test_macro2micro PASSED [ 54%] test/test_macro_subsystem.py::test_blackbox_partial_noise PASSED [ 54%] test/test_macro_subsystem.py::test_blackbox_timescale XFAIL [ 54%] test/test_models.py::test_phi_mechanism_ordering PASSED [ 54%] test/test_models.py::test_sametype_decorator PASSED [ 54%] test/test_models.py::test_numpy_aware_eq_noniterable PASSED [ 55%] test/test_models.py::test_numpy_aware_eq_nparray PASSED [ 55%] test/test_models.py::test_numpy_aware_eq_tuple_nparrays PASSED [ 55%] test/test_models.py::test_numpy_aware_eq_identical PASSED [ 55%] 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test/test_validate.py::test_validate_node_labels PASSED [ 99%] test/test_validate.py::test_validate_time_scale PASSED [ 99%] test/test_validate.py::test_validate_coarse_grain PASSED [ 99%] test/test_validate.py::test_validate_blackbox PASSED [ 99%] test/test_validate.py::test_validate_partition PASSED [ 99%] test/test_validate.py::test_validate_blackbox_and_coarsegrain PASSED [100%] =============================== warnings summary =============================== ../../../../usr/lib/python3.11/site-packages/pkg_resources/__init__.py:121 /usr/lib/python3.11/site-packages/pkg_resources/__init__.py:121: DeprecationWarning: pkg_resources is deprecated as an API warnings.warn("pkg_resources is deprecated as an API", DeprecationWarning) ../../../../usr/lib/python3.11/site-packages/pkg_resources/__init__.py:2870 ../../../../usr/lib/python3.11/site-packages/pkg_resources/__init__.py:2870 ../../../../usr/lib/python3.11/site-packages/pkg_resources/__init__.py:2870 ../../../../usr/lib/python3.11/site-packages/pkg_resources/__init__.py:2870 ../../../../usr/lib/python3.11/site-packages/pkg_resources/__init__.py:2870 ../../../../usr/lib/python3.11/site-packages/pkg_resources/__init__.py:2870 /usr/lib/python3.11/site-packages/pkg_resources/__init__.py:2870: DeprecationWarning: Deprecated call to `pkg_resources.declare_namespace('sphinxcontrib')`. Implementing implicit namespace packages (as specified in PEP 420) is preferred to `pkg_resources.declare_namespace`. See https://setuptools.pypa.io/en/latest/references/keywords.html#keyword-namespace-packages declare_namespace(pkg) -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ============================= slowest 5 durations ============================== 14.76s call docs/examples/emergence.rst::emergence.rst 9.14s call docs/examples/2014paper.rst::2014paper.rst 4.77s call test/test_macro_blackbox.py::test_soup 4.51s call test/test_macro_blackbox.py::test_degenerate 2.19s call test/test_macro_subsystem.py::test_cut_mechanisms =========== 554 passed, 21 skipped, 3 xfailed, 7 warnings in 52.56s ============ + RPM_EC=0 ++ jobs -p + exit 0 Processing files: python3-pyphi-1.2.1-17.fc39.noarch Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.KI7pGN + umask 022 + cd /builddir/build/BUILD + cd pyphi-1.2.1 + DOCDIR=/builddir/build/BUILDROOT/python-pyphi-1.2.1-17.fc39.x86_64/usr/share/doc/python3-pyphi + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/python-pyphi-1.2.1-17.fc39.x86_64/usr/share/doc/python3-pyphi + cp -pr /builddir/build/BUILD/pyphi-1.2.1/README.md /builddir/build/BUILDROOT/python-pyphi-1.2.1-17.fc39.x86_64/usr/share/doc/python3-pyphi + cp -pr /builddir/build/BUILD/pyphi-1.2.1/CHANGELOG.md /builddir/build/BUILDROOT/python-pyphi-1.2.1-17.fc39.x86_64/usr/share/doc/python3-pyphi + cp -pr /builddir/build/BUILD/pyphi-1.2.1/CACHING.rst /builddir/build/BUILDROOT/python-pyphi-1.2.1-17.fc39.x86_64/usr/share/doc/python3-pyphi + cp -pr /builddir/build/BUILD/pyphi-1.2.1/redis.conf /builddir/build/BUILDROOT/python-pyphi-1.2.1-17.fc39.x86_64/usr/share/doc/python3-pyphi + RPM_EC=0 ++ jobs -p + exit 0 Provides: python-pyphi = 1.2.1-17.fc39 python3-pyphi = 1.2.1-17.fc39 python3.11-pyphi = 1.2.1-17.fc39 python3.11dist(pyphi) = 1.2.1 python3dist(pyphi) = 1.2.1 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: python(abi) = 3.11 python3.11dist(decorator) >= 4 python3.11dist(joblib) >= 0.8 python3.11dist(numpy) >= 1.11 python3.11dist(psutil) >= 2.1.1 python3.11dist(pyemd) >= 0.3 python3.11dist(pymongo) >= 2.7.1 python3.11dist(pyyaml) >= 3.13 python3.11dist(redis) >= 2.10.5 python3.11dist(scipy) >= 0.13.3 python3.11dist(tblib) >= 1.3.2 python3.11dist(tqdm) >= 4.20 Processing files: python-pyphi-doc-1.2.1-17.fc39.noarch Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.mIsiAl + umask 022 + cd /builddir/build/BUILD + cd pyphi-1.2.1 + DOCDIR=/builddir/build/BUILDROOT/python-pyphi-1.2.1-17.fc39.x86_64/usr/share/doc/python-pyphi-doc + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/python-pyphi-1.2.1-17.fc39.x86_64/usr/share/doc/python-pyphi-doc + cp -pr /builddir/build/BUILD/pyphi-1.2.1/docs/_build/latex/PyPhi.pdf /builddir/build/BUILDROOT/python-pyphi-1.2.1-17.fc39.x86_64/usr/share/doc/python-pyphi-doc + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.yAlPEF + umask 022 + cd /builddir/build/BUILD + cd pyphi-1.2.1 + LICENSEDIR=/builddir/build/BUILDROOT/python-pyphi-1.2.1-17.fc39.x86_64/usr/share/licenses/python-pyphi-doc + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/python-pyphi-1.2.1-17.fc39.x86_64/usr/share/licenses/python-pyphi-doc + cp -pr /builddir/build/BUILD/pyphi-1.2.1/LICENSE.md /builddir/build/BUILDROOT/python-pyphi-1.2.1-17.fc39.x86_64/usr/share/licenses/python-pyphi-doc + RPM_EC=0 ++ jobs -p + exit 0 Provides: python-pyphi-doc = 1.2.1-17.fc39 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/python-pyphi-1.2.1-17.fc39.x86_64 Wrote: /builddir/build/SRPMS/python-pyphi-1.2.1-17.fc39.src.rpm Wrote: /builddir/build/RPMS/python-pyphi-doc-1.2.1-17.fc39.noarch.rpm Wrote: /builddir/build/RPMS/python3-pyphi-1.2.1-17.fc39.noarch.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.j5l9lX + umask 022 + cd /builddir/build/BUILD + cd pyphi-1.2.1 + /usr/bin/rm -rf /builddir/build/BUILDROOT/python-pyphi-1.2.1-17.fc39.x86_64 + RPM_EC=0 ++ jobs -p + exit 0 Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.9mm6zF + umask 022 + cd /builddir/build/BUILD + rm -rf pyphi-1.2.1 pyphi-1.2.1.gemspec + RPM_EC=0 ++ jobs -p + exit 0 Child return code was: 0