Warning: Permanently added '2620:52:3:1:dead:beef:cafe:c116' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/7272729-fedora-rawhide-x86_64 --chroot fedora-rawhide-x86_64 Version: 0.72 PID: 6740 Logging PID: 6741 Task: {'allow_user_ssh': False, 'appstream': False, 'background': True, 'build_id': 7272729, 'buildroot_pkgs': [], 'chroot': 'fedora-rawhide-x86_64', 'enable_net': False, 'fedora_review': False, 'git_hash': 'fb86d3a6da983f0ffa5108d2c22d7598aa20c890', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/thrnciar/pytest:pr:3/python-bioframe', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'python-bioframe', 'package_version': '0.6.4-1', 'project_dirname': 'pytest:pr:3', 'project_name': 'pytest', 'project_owner': 'thrnciar', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/thrnciar/pytest/fedora-rawhide-x86_64/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None}], 'sandbox': 'thrnciar/pytest--https://src.fedoraproject.org/user/packit', 'source_json': {}, 'source_type': None, 'ssh_public_keys': None, 'submitter': 'https://src.fedoraproject.org/user/packit', 'tags': [], 'task_id': '7272729-fedora-rawhide-x86_64', 'timeout': 18000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/thrnciar/pytest:pr:3/python-bioframe /var/lib/copr-rpmbuild/workspace/workdir-id4470o7/python-bioframe --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/thrnciar/pytest:pr:3/python-bioframe', '/var/lib/copr-rpmbuild/workspace/workdir-id4470o7/python-bioframe', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-id4470o7/python-bioframe'... Running: git checkout fb86d3a6da983f0ffa5108d2c22d7598aa20c890 -- cmd: ['git', 'checkout', 'fb86d3a6da983f0ffa5108d2c22d7598aa20c890', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-id4470o7/python-bioframe rc: 0 stdout: stderr: Note: switching to 'fb86d3a6da983f0ffa5108d2c22d7598aa20c890'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at fb86d3a automatic import of python-bioframe Running: copr-distgit-client sources /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated cmd: ['copr-distgit-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-id4470o7/python-bioframe rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading bioframe-0.6.4.tar.gz INFO: Reading stdout from command: curl --help all INFO: Calling: curl -H Pragma: -o bioframe-0.6.4.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/thrnciar/pytest:pr:3/python-bioframe/bioframe-0.6.4.tar.gz/md5/324f60d1e58141fbe4af0bac90872474/bioframe-0.6.4.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 937k 100 937k 0 0 10.5M 0 --:--:-- --:--:-- --:--:-- 10.6M INFO: Reading stdout from command: md5sum bioframe-0.6.4.tar.gz Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-id4470o7/python-bioframe/python-bioframe.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-id4470o7/python-bioframe --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1712489650.790762 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 5.5 starting (python version = 3.12.1, NVR = mock-5.5-1.fc39), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-id4470o7/python-bioframe/python-bioframe.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-id4470o7/python-bioframe --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1712489650.790762 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-id4470o7/python-bioframe/python-bioframe.spec) Config(fedora-rawhide-x86_64) Start: clean chroot Finish: clean chroot Mock Version: 5.5 INFO: Mock Version: 5.5 Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1712489650.790762/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: Guessed host environment type: unknown INFO: Using bootstrap image: registry.fedoraproject.org/fedora:rawhide INFO: Pulling image: registry.fedoraproject.org/fedora:rawhide INFO: Copy content of container registry.fedoraproject.org/fedora:rawhide to /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1712489650.790762/root INFO: Checking that registry.fedoraproject.org/fedora:rawhide image matches host's architecture INFO: mounting registry.fedoraproject.org/fedora:rawhide with podman image mount INFO: image registry.fedoraproject.org/fedora:rawhide as /var/lib/containers/storage/overlay/7e4259f6ff452649f7431b58695ecd7bfa390ee608522d089911868b5cfe0e3c/merged INFO: umounting image registry.fedoraproject.org/fedora:rawhide (/var/lib/containers/storage/overlay/7e4259f6ff452649f7431b58695ecd7bfa390ee608522d089911868b5cfe0e3c/merged) with podman image umount INFO: Using 'dnf' instead of 'dnf5' for bootstrap chroot INFO: Package manager dnf detected and used (fallback) INFO: Bootstrap image not marked ready Start(bootstrap): installing dnf5 tooling No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 15 MB/s | 2.1 MB 00:00 fedora 14 MB/s | 20 MB 00:01 Dependencies resolved. ================================================================================ Package Architecture Version Repository Size ================================================================================ Installing: dnf5 x86_64 5.1.17-1.fc41 fedora 700 k dnf5-plugins x86_64 5.1.17-1.fc41 fedora 358 k Installing dependencies: fmt x86_64 10.2.1-4.fc41 fedora 125 k libdnf5 x86_64 5.1.17-1.fc41 fedora 997 k libdnf5-cli x86_64 5.1.17-1.fc41 fedora 231 k sdbus-cpp x86_64 1.5.0-2.fc41 fedora 113 k systemd-libs x86_64 255.4-1.fc41 copr_base 708 k Transaction Summary ================================================================================ Install 7 Packages Total download size: 3.2 M Installed size: 8.8 M Downloading Packages: (1/7): systemd-libs-255.4-1.fc41.x86_64.rpm 9.8 MB/s | 708 kB 00:00 (2/7): dnf5-plugins-5.1.17-1.fc41.x86_64.rpm 1.5 MB/s | 358 kB 00:00 (3/7): fmt-10.2.1-4.fc41.x86_64.rpm 644 kB/s | 125 kB 00:00 (4/7): dnf5-5.1.17-1.fc41.x86_64.rpm 2.5 MB/s | 700 kB 00:00 (5/7): sdbus-cpp-1.5.0-2.fc41.x86_64.rpm 3.2 MB/s | 113 kB 00:00 (6/7): libdnf5-5.1.17-1.fc41.x86_64.rpm 10 MB/s | 997 kB 00:00 (7/7): libdnf5-cli-5.1.17-1.fc41.x86_64.rpm 3.0 MB/s | 231 kB 00:00 -------------------------------------------------------------------------------- Total 8.4 MB/s | 3.2 MB 00:00 Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Preparing : 1/1 Installing : fmt-10.2.1-4.fc41.x86_64 1/7 Installing : libdnf5-5.1.17-1.fc41.x86_64 2/7 Installing : libdnf5-cli-5.1.17-1.fc41.x86_64 3/7 Installing : systemd-libs-255.4-1.fc41.x86_64 4/7 Installing : sdbus-cpp-1.5.0-2.fc41.x86_64 5/7 Installing : dnf5-5.1.17-1.fc41.x86_64 6/7 Installing : dnf5-plugins-5.1.17-1.fc41.x86_64 7/7 Running scriptlet: dnf5-plugins-5.1.17-1.fc41.x86_64 7/7 Installed: dnf5-5.1.17-1.fc41.x86_64 dnf5-plugins-5.1.17-1.fc41.x86_64 fmt-10.2.1-4.fc41.x86_64 libdnf5-5.1.17-1.fc41.x86_64 libdnf5-cli-5.1.17-1.fc41.x86_64 sdbus-cpp-1.5.0-2.fc41.x86_64 systemd-libs-255.4-1.fc41.x86_64 Complete! INFO: Switching package manager from dnf to the dnf5 (direct choice) Finish(bootstrap): installing dnf5 tooling Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1712489650.790762/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf5 detected and used (direct choice) INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.19.1.1-1.fc40.x86_64 rpm-sequoia-1.6.0-2.fc40.x86_64 python3-dnf-4.19.2-1.fc41.noarch yum-4.19.2-1.fc41.noarch dnf5-5.1.17-1.fc41.x86_64 dnf5-plugins-5.1.17-1.fc41.x86_64 Start: installing minimal buildroot with dnf5 Updating and loading repositories: fedora 100% | 19.2 MiB/s | 20.9 MiB | 00m01s Copr repository 100% | 17.8 MiB/s | 2.1 MiB | 00m00s Repositories loaded. Package Arch Version Repository Size Installing group/module packages: bash x86_64 5.2.26-3.fc40 fedora 8.1 MiB bzip2 x86_64 1.0.8-18.fc40 fedora 91.7 KiB coreutils x86_64 9.5-1.fc41 fedora 5.5 MiB cpio x86_64 2.15-1.fc40 fedora 1.1 MiB diffutils x86_64 3.10-5.fc40 fedora 1.6 MiB fedora-release-common noarch 41-0.6 fedora 19.2 KiB findutils x86_64 1:4.9.0-8.fc40 fedora 1.5 MiB gawk x86_64 5.3.0-3.fc40 fedora 1.7 MiB glibc-minimal-langpack x86_64 2.39.9000-10.fc41 fedora 0.0 B grep x86_64 3.11-7.fc40 fedora 1.0 MiB gzip x86_64 1.13-1.fc40 fedora 385.0 KiB info x86_64 7.1-2.fc40 fedora 357.8 KiB patch x86_64 2.7.6-24.fc40 fedora 262.8 KiB redhat-rpm-config noarch 287-1.fc41 fedora 185.4 KiB rpm-build x86_64 4.19.1.1-1.fc40 fedora 173.7 KiB sed x86_64 4.9-1.fc40 fedora 861.5 KiB shadow-utils x86_64 2:4.15.1-2.fc41 fedora 4.1 MiB tar x86_64 2:1.35-3.fc40 fedora 2.9 MiB unzip x86_64 6.0-63.fc40 fedora 382.8 KiB util-linux x86_64 2.40-0.12.fc41 fedora 3.7 MiB which x86_64 2.21-41.fc40 fedora 80.2 KiB xz x86_64 1:5.4.6-3.fc41 fedora 2.0 MiB Installing dependencies: alternatives x86_64 1.26-3.fc40 fedora 62.3 KiB ansible-srpm-macros noarch 1-14.fc40 fedora 35.7 KiB audit-libs x86_64 4.0.1-1.fc41 fedora 327.3 KiB authselect x86_64 1.5.0-5.fc41 fedora 153.6 KiB authselect-libs x86_64 1.5.0-5.fc41 fedora 818.2 KiB basesystem noarch 11-20.fc40 fedora 0.0 B binutils x86_64 2.42.50-6.fc41 fedora 27.2 MiB binutils-gold x86_64 2.42.50-6.fc41 fedora 2.0 MiB bzip2-libs x86_64 1.0.8-18.fc40 fedora 80.7 KiB ca-certificates noarch 2023.2.62_v7.0.401-6.fc40 fedora 2.3 MiB coreutils-common x86_64 9.5-1.fc41 fedora 11.2 MiB cracklib x86_64 2.9.11-5.fc40 fedora 238.9 KiB crypto-policies noarch 20240320-1.git58e3d95.fc41 copr_base 119.2 KiB curl x86_64 8.7.1-1.fc41 fedora 758.1 KiB cyrus-sasl-lib x86_64 2.1.28-19.fc40 fedora 2.3 MiB debugedit x86_64 5.0-14.fc40 fedora 199.0 KiB dwz x86_64 0.15-6.fc40 fedora 290.9 KiB ed x86_64 1.20.1-1.fc41 fedora 146.5 KiB efi-srpm-macros noarch 5-11.fc40 fedora 40.1 KiB elfutils x86_64 0.191-5.fc41 fedora 2.5 MiB elfutils-debuginfod-client x86_64 0.191-5.fc41 fedora 64.9 KiB elfutils-default-yama-scope noarch 0.191-5.fc41 fedora 1.8 KiB elfutils-libelf x86_64 0.191-5.fc41 fedora 1.2 MiB elfutils-libs x86_64 0.191-5.fc41 fedora 646.2 KiB fedora-gpg-keys noarch 41-0.1 fedora 125.0 KiB fedora-release noarch 41-0.6 fedora 0.0 B fedora-release-identity-basic noarch 41-0.6 fedora 694.0 B fedora-repos noarch 41-0.1 fedora 4.9 KiB fedora-repos-rawhide noarch 41-0.1 fedora 2.2 KiB file x86_64 5.45-5.fc41 fedora 103.5 KiB file-libs x86_64 5.45-5.fc41 fedora 9.9 MiB filesystem x86_64 3.18-8.fc40 fedora 106.0 B fonts-srpm-macros noarch 1:2.0.5-14.fc40 fedora 55.3 KiB forge-srpm-macros noarch 0.3.0-1.fc41 copr_base 38.9 KiB fpc-srpm-macros noarch 1.3-12.fc40 fedora 144.0 B gdb-minimal x86_64 14.2-1.fc41 fedora 12.7 MiB gdbm x86_64 1:1.23-6.fc40 fedora 460.9 KiB gdbm-libs x86_64 1:1.23-6.fc40 fedora 121.9 KiB ghc-srpm-macros noarch 1.9.1-1.fc41 fedora 747.0 B glibc x86_64 2.39.9000-10.fc41 fedora 6.7 MiB glibc-common x86_64 2.39.9000-10.fc41 fedora 1.0 MiB glibc-gconv-extra x86_64 2.39.9000-10.fc41 fedora 7.8 MiB gmp x86_64 1:6.3.0-1.fc41 fedora 803.4 KiB gnat-srpm-macros noarch 6-5.fc40 fedora 1.0 KiB go-srpm-macros noarch 3.5.0-1.fc41 fedora 60.6 KiB jansson x86_64 2.13.1-9.fc40 fedora 88.3 KiB kernel-srpm-macros noarch 1.0-23.fc41 fedora 1.9 KiB keyutils-libs x86_64 1.6.3-3.fc40 fedora 54.4 KiB krb5-libs x86_64 1.21.2-5.fc40 fedora 2.3 MiB libacl x86_64 2.3.2-1.fc40 fedora 40.0 KiB libarchive x86_64 3.7.2-3.fc40 fedora 914.6 KiB libattr x86_64 2.5.2-3.fc40 fedora 28.5 KiB libblkid x86_64 2.40-0.12.fc41 fedora 262.5 KiB libbrotli x86_64 1.1.0-3.fc40 fedora 829.5 KiB libcap x86_64 2.69-8.fc41 fedora 219.7 KiB libcap-ng x86_64 0.8.4-4.fc40 fedora 73.1 KiB libcom_err x86_64 1.47.0-5.fc40 fedora 67.2 KiB libcurl x86_64 8.7.1-1.fc41 fedora 793.5 KiB libeconf x86_64 0.6.2-1.fc41 fedora 58.0 KiB libevent x86_64 2.1.12-12.fc40 fedora 895.6 KiB libfdisk x86_64 2.40-0.12.fc41 fedora 362.9 KiB libffi x86_64 3.4.6-1.fc41 fedora 82.4 KiB libgcc x86_64 14.0.1-0.13.fc41 fedora 270.6 KiB libgomp x86_64 14.0.1-0.13.fc41 fedora 518.9 KiB libidn2 x86_64 2.3.7-1.fc40 fedora 329.1 KiB libmount x86_64 2.40-0.12.fc41 fedora 351.8 KiB libnghttp2 x86_64 1.61.0-1.fc41 fedora 166.1 KiB libnsl2 x86_64 2.0.1-1.fc40 fedora 57.9 KiB libpkgconf x86_64 2.1.0-1.fc40 fedora 74.2 KiB libpsl x86_64 0.21.5-3.fc40 fedora 80.5 KiB libpwquality x86_64 1.4.5-9.fc40 fedora 417.8 KiB libselinux x86_64 3.6-4.fc40 fedora 173.0 KiB libsemanage x86_64 3.6-3.fc40 fedora 293.5 KiB libsepol x86_64 3.6-3.fc40 fedora 802.0 KiB libsmartcols x86_64 2.40-0.12.fc41 fedora 180.4 KiB libssh x86_64 0.10.6-6.fc41 fedora 513.3 KiB libssh-config noarch 0.10.6-6.fc41 fedora 277.0 B libstdc++ x86_64 14.0.1-0.13.fc41 fedora 2.8 MiB libtasn1 x86_64 4.19.0-6.fc40 fedora 175.7 KiB libtirpc x86_64 1.3.4-1.rc3.fc41 fedora 202.8 KiB libtool-ltdl x86_64 2.4.7-10.fc40 fedora 66.2 KiB libunistring x86_64 1.1-7.fc41 fedora 1.7 MiB libutempter x86_64 1.2.1-13.fc40 fedora 57.7 KiB libuuid x86_64 2.40-0.12.fc41 fedora 37.4 KiB libverto x86_64 0.3.2-8.fc40 fedora 29.5 KiB libxcrypt x86_64 4.4.36-5.fc40 fedora 262.8 KiB libxml2 x86_64 2.12.6-1.fc41 fedora 1.7 MiB libzstd x86_64 1.5.6-1.fc41 fedora 787.9 KiB lua-libs x86_64 5.4.6-5.fc40 fedora 281.1 KiB lua-srpm-macros noarch 1-13.fc40 fedora 1.3 KiB lz4-libs x86_64 1.9.4-6.fc40 fedora 129.4 KiB mpfr x86_64 4.2.1-3.fc40 fedora 832.0 KiB ncurses-base noarch 6.4-12.20240127.fc40 fedora 326.2 KiB ncurses-libs x86_64 6.4-12.20240127.fc40 fedora 963.2 KiB ocaml-srpm-macros noarch 9-3.fc40 fedora 1.9 KiB openblas-srpm-macros noarch 2-17.fc41 fedora 112.0 B openldap x86_64 2.6.7-1.fc40 fedora 635.1 KiB openssl-libs x86_64 1:3.2.1-6.fc41 fedora 7.8 MiB p11-kit x86_64 0.25.3-4.fc40 fedora 2.2 MiB p11-kit-trust x86_64 0.25.3-4.fc40 fedora 391.4 KiB package-notes-srpm-macros noarch 0.5-11.fc40 fedora 1.6 KiB pam x86_64 1.6.0-2.fc41 fedora 1.8 MiB pam-libs x86_64 1.6.0-2.fc41 fedora 135.0 KiB pcre2 x86_64 10.43-1.fc41 fedora 653.5 KiB pcre2-syntax noarch 10.43-1.fc41 fedora 249.0 KiB perl-srpm-macros noarch 1-53.fc40 fedora 861.0 B pkgconf x86_64 2.1.0-1.fc40 fedora 82.4 KiB pkgconf-m4 noarch 2.1.0-1.fc40 fedora 13.9 KiB pkgconf-pkg-config x86_64 2.1.0-1.fc40 fedora 989.0 B popt x86_64 1.19-6.fc40 fedora 136.9 KiB publicsuffix-list-dafsa noarch 20240107-3.fc40 fedora 67.5 KiB pyproject-srpm-macros noarch 1.12.0-1.fc41 copr_base 1.5 KiB python-srpm-macros noarch 3.12-9.fc41 fedora 50.5 KiB qt5-srpm-macros noarch 5.15.13-1.fc41 fedora 492.0 B qt6-srpm-macros noarch 6.7.0-1.fc41 fedora 456.0 B readline x86_64 8.2-8.fc40 fedora 489.2 KiB rpm x86_64 4.19.1.1-1.fc40 fedora 3.0 MiB rpm-build-libs x86_64 4.19.1.1-1.fc40 fedora 198.4 KiB rpm-libs x86_64 4.19.1.1-1.fc40 fedora 709.9 KiB rpm-sequoia x86_64 1.6.0-2.fc40 fedora 2.2 MiB rust-srpm-macros noarch 26.2-1.fc41 copr_base 4.8 KiB setup noarch 2.14.5-2.fc40 fedora 720.4 KiB sqlite-libs x86_64 3.45.2-1.fc41 fedora 1.4 MiB systemd-libs x86_64 255.4-1.fc41 copr_base 1.9 MiB util-linux-core x86_64 2.40-0.12.fc41 fedora 1.5 MiB xxhash-libs x86_64 0.8.2-2.fc40 fedora 88.5 KiB xz-libs x86_64 1:5.4.6-3.fc41 fedora 209.8 KiB zig-srpm-macros noarch 1-2.fc40 fedora 1.1 KiB zip x86_64 3.0-40.fc40 fedora 703.2 KiB zlib-ng-compat x86_64 2.1.6-2.fc40 fedora 134.0 KiB zstd x86_64 1.5.6-1.fc41 fedora 1.7 MiB Installing groups: Buildsystem building group Transaction Summary: Installing: 153 packages Total size of inbound packages is 53 MiB. Need to download 53 MiB. After this operation 179 MiB will be used (install 179 MiB, remove 0 B). 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MiB/s | 52.8 MiB | 00m02s Running transaction Importing PGP key 0xE99D6AD1: Userid : "Fedora (41) " Fingerprint: 466CF2D8B60BC3057AA9453ED0622462E99D6AD1 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-41-primary The key was successfully imported. Importing PGP key 0xE99D6AD1: Userid : "Fedora (41) " Fingerprint: 466CF2D8B60BC3057AA9453ED0622462E99D6AD1 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-41-primary The key was successfully imported. Importing PGP key 0xA15B79CC: Userid : "Fedora (40) " Fingerprint: 115DF9AEF857853EE8445D0A0727707EA15B79CC From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-40-primary The key was successfully imported. [ 1/155] Verify package files 100% | 575.0 B/s | 153.0 B | 00m00s >>> Running pre-transaction scriptlet: filesystem-0:3.18-8.fc40.x86_64 >>> Stop pre-transaction scriptlet: filesystem-0:3.18-8.fc40.x86_64 [ 2/155] Prepare transaction 100% | 1.8 KiB/s | 153.0 B | 00m00s [ 3/155] Installing libgcc-0:14.0.1-0. 100% | 88.6 MiB/s | 272.3 KiB | 00m00s >>> Running post-install scriptlet: libgcc-0:14.0.1-0.13.fc41.x86_64 >>> Stop post-install scriptlet: libgcc-0:14.0.1-0.13.fc41.x86_64 [ 4/155] Installing crypto-policies-0: 100% | 15.9 MiB/s | 146.2 KiB | 00m00s >>> Running post-install scriptlet: crypto-policies-0:20240320-1.git58e3d95.fc41 >>> Stop post-install scriptlet: crypto-policies-0:20240320-1.git58e3d95.fc41.no [ 5/155] Installing fedora-release-ide 100% | 0.0 B/s | 952.0 B | 00m00s [ 6/155] Installing fedora-repos-rawhi 100% | 2.4 MiB/s | 2.4 KiB | 00m00s [ 7/155] Installing fedora-gpg-keys-0: 100% | 20.8 MiB/s | 170.1 KiB | 00m00s [ 8/155] Installing fedora-repos-0:41- 100% | 5.6 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00m00s >>> Running post-install scriptlet: elfutils-default-yama-scope-0:0.191-5.fc41.n >>> Stop post-install scriptlet: elfutils-default-yama-scope-0:0.191-5.fc41.noar [ 87/155] Installing cpio-0:2.15-1.fc40 100% | 137.5 MiB/s | 1.1 MiB | 00m00s [ 88/155] Installing diffutils-0:3.10-5 100% | 176.2 MiB/s | 1.6 MiB | 00m00s [ 89/155] Installing libgomp-0:14.0.1-0 100% | 254.0 MiB/s | 520.3 KiB | 00m00s [ 90/155] Installing keyutils-libs-0:1. 100% | 54.5 MiB/s | 55.8 KiB | 00m00s [ 91/155] Installing libverto-0:0.3.2-8 100% | 30.5 MiB/s | 31.3 KiB | 00m00s [ 92/155] Installing libpkgconf-0:2.1.0 100% | 73.6 MiB/s | 75.3 KiB | 00m00s [ 93/155] Installing pkgconf-0:2.1.0-1. 100% | 41.5 MiB/s | 84.9 KiB | 00m00s [ 94/155] Installing pkgconf-pkg-config 100% | 1.7 MiB/s | 1.8 KiB | 00m00s [ 95/155] Installing libffi-0:3.4.6-1.f 100% | 81.8 MiB/s | 83.8 KiB | 00m00s [ 96/155] Installing p11-kit-0:0.25.3-4 100% | 156.7 MiB/s | 2.2 MiB | 00m00s [ 97/155] Installing p11-kit-trust-0:0. 100% | 25.6 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libevent-0:2.1.12- 100% | 175.7 MiB/s | 899.4 KiB | 00m00s [131/155] Installing openldap-0:2.6.7-1 100% | 156.0 MiB/s | 638.9 KiB | 00m00s [132/155] Installing libcurl-0:8.7.1-1. 100% | 194.0 MiB/s | 794.6 KiB | 00m00s [133/155] Installing elfutils-libs-0:0. 100% | 210.9 MiB/s | 648.0 KiB | 00m00s [134/155] Installing elfutils-debuginfo 100% | 65.3 MiB/s | 66.9 KiB | 00m00s [135/155] Installing binutils-gold-0:2. 100% | 101.5 MiB/s | 2.0 MiB | 00m00s >>> Running post-install scriptlet: binutils-gold-0:2.42.50-6.fc41.x86_64 >>> Stop post-install scriptlet: binutils-gold-0:2.42.50-6.fc41.x86_64 [136/155] Installing binutils-0:2.42.50 100% | 259.5 MiB/s | 27.2 MiB | 00m00s >>> Running post-install scriptlet: binutils-0:2.42.50-6.fc41.x86_64 >>> Stop post-install scriptlet: binutils-0:2.42.50-6.fc41.x86_64 [137/155] Installing elfutils-0:0.191-5 100% | 232.0 MiB/s | 2.6 MiB | 00m00s [138/155] Installing gdb-minimal-0:14.2 100% | 301.5 MiB/s | 12.7 MiB | 00m00s [139/155] Installing debugedit-0:5.0-14 100% | 98.5 MiB/s | 201.7 KiB | 00m00s [140/155] Installing rpm-build-libs-0:4 100% | 97.3 MiB/s | 199.2 KiB | 00m00s [141/155] Installing curl-0:8.7.1-1.fc4 100% | 35.4 MiB/s | 760.6 KiB | 00m00s >>> Running pre-install scriptlet: rpm-0:4.19.1.1-1.fc40.x86_64 >>> Stop pre-install scriptlet: rpm-0:4.19.1.1-1.fc40.x86_64 [142/155] Installing rpm-0:4.19.1.1-1.f 100% | 88.8 MiB/s | 2.4 MiB | 00m00s [143/155] Installing efi-srpm-macros-0: 100% | 40.2 MiB/s | 41.2 KiB | 00m00s [144/155] Installing lua-srpm-macros-0: 100% | 0.0 B/s | 1.9 KiB | 00m00s [145/155] Installing zig-srpm-macros-0: 100% | 0.0 B/s | 1.7 KiB | 00m00s [146/155] Installing python-srpm-macros 100% | 50.5 MiB/s | 51.7 KiB | 00m00s [147/155] Installing fonts-srpm-macros- 100% | 55.1 MiB/s | 56.5 KiB | 00m00s [148/155] Installing go-srpm-macros-0:3 100% | 60.2 MiB/s | 61.6 KiB | 00m00s [149/155] Installing forge-srpm-macros- 100% | 39.2 MiB/s | 40.2 KiB | 00m00s [150/155] Installing redhat-rpm-config- 100% | 62.5 MiB/s | 191.9 KiB | 00m00s [151/155] Installing rpm-build-0:4.19.1 100% | 59.2 MiB/s | 182.0 KiB | 00m00s [152/155] Installing pyproject-srpm-mac 100% | 1.0 MiB/s | 2.1 KiB | 00m00s [153/155] Installing util-linux-0:2.40- 100% | 89.0 MiB/s | 3.7 MiB | 00m00s >>> Running post-install scriptlet: util-linux-0:2.40-0.12.fc41.x86_64 >>> Stop post-install scriptlet: util-linux-0:2.40-0.12.fc41.x86_64 [154/155] Installing which-0:2.21-41.fc 100% | 40.3 MiB/s | 82.4 KiB | 00m00s [155/155] Installing info-0:7.1-2.fc40. 100% | 282.5 KiB/s | 358.2 KiB | 00m01s >>> Running post-transaction scriptlet: filesystem-0:3.18-8.fc40.x86_64 >>> Stop post-transaction scriptlet: filesystem-0:3.18-8.fc40.x86_64 >>> Running post-transaction scriptlet: ca-certificates-0:2023.2.62_v7.0.401-6.f >>> Stop post-transaction scriptlet: ca-certificates-0:2023.2.62_v7.0.401-6.fc40 >>> Running post-transaction scriptlet: authselect-libs-0:1.5.0-5.fc41.x86_64 >>> Stop post-transaction scriptlet: authselect-libs-0:1.5.0-5.fc41.x86_64 >>> Running post-transaction scriptlet: rpm-0:4.19.1.1-1.fc40.x86_64 >>> Stop post-transaction scriptlet: rpm-0:4.19.1.1-1.fc40.x86_64 >>> Running trigger-install scriptlet: glibc-common-0:2.39.9000-10.fc41.x86_64 >>> Stop trigger-install scriptlet: glibc-common-0:2.39.9000-10.fc41.x86_64 >>> Running trigger-install scriptlet: info-0:7.1-2.fc40.x86_64 >>> Stop trigger-install scriptlet: info-0:7.1-2.fc40.x86_64 Warning: skipped PGP checks for 5 package(s). Finish: installing minimal buildroot with dnf5 Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: alternatives-1.26-3.fc40.x86_64 ansible-srpm-macros-1-14.fc40.noarch audit-libs-4.0.1-1.fc41.x86_64 authselect-1.5.0-5.fc41.x86_64 authselect-libs-1.5.0-5.fc41.x86_64 basesystem-11-20.fc40.noarch bash-5.2.26-3.fc40.x86_64 binutils-2.42.50-6.fc41.x86_64 binutils-gold-2.42.50-6.fc41.x86_64 bzip2-1.0.8-18.fc40.x86_64 bzip2-libs-1.0.8-18.fc40.x86_64 ca-certificates-2023.2.62_v7.0.401-6.fc40.noarch coreutils-9.5-1.fc41.x86_64 coreutils-common-9.5-1.fc41.x86_64 cpio-2.15-1.fc40.x86_64 cracklib-2.9.11-5.fc40.x86_64 crypto-policies-20240320-1.git58e3d95.fc41.noarch curl-8.7.1-1.fc41.x86_64 cyrus-sasl-lib-2.1.28-19.fc40.x86_64 debugedit-5.0-14.fc40.x86_64 diffutils-3.10-5.fc40.x86_64 dwz-0.15-6.fc40.x86_64 ed-1.20.1-1.fc41.x86_64 efi-srpm-macros-5-11.fc40.noarch elfutils-0.191-5.fc41.x86_64 elfutils-debuginfod-client-0.191-5.fc41.x86_64 elfutils-default-yama-scope-0.191-5.fc41.noarch elfutils-libelf-0.191-5.fc41.x86_64 elfutils-libs-0.191-5.fc41.x86_64 fedora-gpg-keys-41-0.1.noarch fedora-release-41-0.6.noarch fedora-release-common-41-0.6.noarch fedora-release-identity-basic-41-0.6.noarch fedora-repos-41-0.1.noarch fedora-repos-rawhide-41-0.1.noarch file-5.45-5.fc41.x86_64 file-libs-5.45-5.fc41.x86_64 filesystem-3.18-8.fc40.x86_64 findutils-4.9.0-8.fc40.x86_64 fonts-srpm-macros-2.0.5-14.fc40.noarch forge-srpm-macros-0.3.0-1.fc41.noarch fpc-srpm-macros-1.3-12.fc40.noarch gawk-5.3.0-3.fc40.x86_64 gdb-minimal-14.2-1.fc41.x86_64 gdbm-1.23-6.fc40.x86_64 gdbm-libs-1.23-6.fc40.x86_64 ghc-srpm-macros-1.9.1-1.fc41.noarch glibc-2.39.9000-10.fc41.x86_64 glibc-common-2.39.9000-10.fc41.x86_64 glibc-gconv-extra-2.39.9000-10.fc41.x86_64 glibc-minimal-langpack-2.39.9000-10.fc41.x86_64 gmp-6.3.0-1.fc41.x86_64 gnat-srpm-macros-6-5.fc40.noarch go-srpm-macros-3.5.0-1.fc41.noarch gpg-pubkey-a15b79cc-63d04c2c gpg-pubkey-e99d6ad1-64d2612c grep-3.11-7.fc40.x86_64 gzip-1.13-1.fc40.x86_64 info-7.1-2.fc40.x86_64 jansson-2.13.1-9.fc40.x86_64 kernel-srpm-macros-1.0-23.fc41.noarch keyutils-libs-1.6.3-3.fc40.x86_64 krb5-libs-1.21.2-5.fc40.x86_64 libacl-2.3.2-1.fc40.x86_64 libarchive-3.7.2-3.fc40.x86_64 libattr-2.5.2-3.fc40.x86_64 libblkid-2.40-0.12.fc41.x86_64 libbrotli-1.1.0-3.fc40.x86_64 libcap-2.69-8.fc41.x86_64 libcap-ng-0.8.4-4.fc40.x86_64 libcom_err-1.47.0-5.fc40.x86_64 libcurl-8.7.1-1.fc41.x86_64 libeconf-0.6.2-1.fc41.x86_64 libevent-2.1.12-12.fc40.x86_64 libfdisk-2.40-0.12.fc41.x86_64 libffi-3.4.6-1.fc41.x86_64 libgcc-14.0.1-0.13.fc41.x86_64 libgomp-14.0.1-0.13.fc41.x86_64 libidn2-2.3.7-1.fc40.x86_64 libmount-2.40-0.12.fc41.x86_64 libnghttp2-1.61.0-1.fc41.x86_64 libnsl2-2.0.1-1.fc40.x86_64 libpkgconf-2.1.0-1.fc40.x86_64 libpsl-0.21.5-3.fc40.x86_64 libpwquality-1.4.5-9.fc40.x86_64 libselinux-3.6-4.fc40.x86_64 libsemanage-3.6-3.fc40.x86_64 libsepol-3.6-3.fc40.x86_64 libsmartcols-2.40-0.12.fc41.x86_64 libssh-0.10.6-6.fc41.x86_64 libssh-config-0.10.6-6.fc41.noarch libstdc++-14.0.1-0.13.fc41.x86_64 libtasn1-4.19.0-6.fc40.x86_64 libtirpc-1.3.4-1.rc3.fc41.x86_64 libtool-ltdl-2.4.7-10.fc40.x86_64 libunistring-1.1-7.fc41.x86_64 libutempter-1.2.1-13.fc40.x86_64 libuuid-2.40-0.12.fc41.x86_64 libverto-0.3.2-8.fc40.x86_64 libxcrypt-4.4.36-5.fc40.x86_64 libxml2-2.12.6-1.fc41.x86_64 libzstd-1.5.6-1.fc41.x86_64 lua-libs-5.4.6-5.fc40.x86_64 lua-srpm-macros-1-13.fc40.noarch lz4-libs-1.9.4-6.fc40.x86_64 mpfr-4.2.1-3.fc40.x86_64 ncurses-base-6.4-12.20240127.fc40.noarch ncurses-libs-6.4-12.20240127.fc40.x86_64 ocaml-srpm-macros-9-3.fc40.noarch openblas-srpm-macros-2-17.fc41.noarch openldap-2.6.7-1.fc40.x86_64 openssl-libs-3.2.1-6.fc41.x86_64 p11-kit-0.25.3-4.fc40.x86_64 p11-kit-trust-0.25.3-4.fc40.x86_64 package-notes-srpm-macros-0.5-11.fc40.noarch pam-1.6.0-2.fc41.x86_64 pam-libs-1.6.0-2.fc41.x86_64 patch-2.7.6-24.fc40.x86_64 pcre2-10.43-1.fc41.x86_64 pcre2-syntax-10.43-1.fc41.noarch perl-srpm-macros-1-53.fc40.noarch pkgconf-2.1.0-1.fc40.x86_64 pkgconf-m4-2.1.0-1.fc40.noarch pkgconf-pkg-config-2.1.0-1.fc40.x86_64 popt-1.19-6.fc40.x86_64 publicsuffix-list-dafsa-20240107-3.fc40.noarch pyproject-srpm-macros-1.12.0-1.fc41.noarch python-srpm-macros-3.12-9.fc41.noarch qt5-srpm-macros-5.15.13-1.fc41.noarch qt6-srpm-macros-6.7.0-1.fc41.noarch readline-8.2-8.fc40.x86_64 redhat-rpm-config-287-1.fc41.noarch rpm-4.19.1.1-1.fc40.x86_64 rpm-build-4.19.1.1-1.fc40.x86_64 rpm-build-libs-4.19.1.1-1.fc40.x86_64 rpm-libs-4.19.1.1-1.fc40.x86_64 rpm-sequoia-1.6.0-2.fc40.x86_64 rust-srpm-macros-26.2-1.fc41.noarch sed-4.9-1.fc40.x86_64 setup-2.14.5-2.fc40.noarch shadow-utils-4.15.1-2.fc41.x86_64 sqlite-libs-3.45.2-1.fc41.x86_64 systemd-libs-255.4-1.fc41.x86_64 tar-1.35-3.fc40.x86_64 unzip-6.0-63.fc40.x86_64 util-linux-2.40-0.12.fc41.x86_64 util-linux-core-2.40-0.12.fc41.x86_64 which-2.21-41.fc40.x86_64 xxhash-libs-0.8.2-2.fc40.x86_64 xz-5.4.6-3.fc41.x86_64 xz-libs-5.4.6-3.fc41.x86_64 zig-srpm-macros-1-2.fc40.noarch zip-3.0-40.fc40.x86_64 zlib-ng-compat-2.1.6-2.fc40.x86_64 zstd-1.5.6-1.fc41.x86_64 Start: buildsrpm Start: rpmbuild -bs Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1712448000 Wrote: /builddir/build/SRPMS/python-bioframe-0.6.4-1.fc41.src.rpm Finish: rpmbuild -bs cp: preserving permissions for ‘/var/lib/copr-rpmbuild/results/chroot_scan/var/lib/mock/fedora-rawhide-x86_64-1712489650.790762/root/var/log’: No such file or directory INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-x86_64-1712489650.790762/root/var/log/dnf5.log Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-id4470o7/python-bioframe/python-bioframe.spec) Config(child) 0 minutes 40 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/python-bioframe-0.6.4-1.fc41.src.rpm) Config(fedora-rawhide-x86_64) Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1712489650.790762/root. INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1712489650.790762/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1712489650.790762/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.19.1.1-1.fc40.x86_64 rpm-sequoia-1.6.0-2.fc40.x86_64 python3-dnf-4.19.2-1.fc41.noarch yum-4.19.2-1.fc41.noarch dnf5-5.1.17-1.fc41.x86_64 dnf5-plugins-5.1.17-1.fc41.x86_64 Finish: chroot init Start: build phase for python-bioframe-0.6.4-1.fc41.src.rpm Start: build setup for python-bioframe-0.6.4-1.fc41.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1712448000 Wrote: /builddir/build/SRPMS/python-bioframe-0.6.4-1.fc41.src.rpm Updating and loading repositories: fedora 100% | 753.3 KiB/s | 21.1 KiB | 00m00s Copr repository 100% | 52.9 KiB/s | 1.5 KiB | 00m00s Repositories loaded. Package Arch Version Repository Size Installing: python3-devel x86_64 3.12.2-3.fc41 fedora 1.2 MiB python3-pytest noarch 8.1.1-1.fc41 copr_base 15.9 MiB Installing dependencies: expat x86_64 2.6.2-1.fc41 fedora 280.8 KiB libb2 x86_64 0.98.1-11.fc40 fedora 42.2 KiB mpdecimal x86_64 2.5.1-9.fc40 fedora 200.9 KiB pyproject-rpm-macros noarch 1.12.0-1.fc41 copr_base 99.3 KiB python-pip-wheel noarch 24.0-2.fc41 copr_base 1.5 MiB python-rpm-macros noarch 3.12-9.fc41 fedora 22.1 KiB python3 x86_64 3.12.2-3.fc41 fedora 31.9 KiB python3-iniconfig noarch 1.1.1-20.fc41 copr_base 20.5 KiB python3-libs x86_64 3.12.2-3.fc41 fedora 40.9 MiB python3-packaging noarch 24.0-1.fc41 copr_base 424.8 KiB python3-pluggy noarch 1.4.0-1.fc41 copr_base 188.4 KiB python3-rpm-generators noarch 14-10.fc40 fedora 81.7 KiB python3-rpm-macros noarch 3.12-9.fc41 fedora 6.4 KiB tzdata noarch 2024a-4.fc41 fedora 1.6 MiB Transaction Summary: Installing: 16 packages Total size of inbound packages is 14 MiB. Need to download 14 MiB. After this operation 63 MiB will be used (install 63 MiB, remove 0 B). [ 1/16] python3-pytest-0:8.1.1-1.fc41.n 100% | 22.0 MiB/s | 1.8 MiB | 00m00s [ 2/16] python3-pluggy-0:1.4.0-1.fc41.n 100% | 5.6 MiB/s | 52.0 KiB | 00m00s [ 3/16] python3-devel-0:3.12.2-3.fc41.x 100% | 1.3 MiB/s | 312.7 KiB | 00m00s [ 4/16] libb2-0:0.98.1-11.fc40.x86_64 100% | 878.3 KiB/s | 25.5 KiB | 00m00s [ 5/16] expat-0:2.6.2-1.fc41.x86_64 100% | 608.6 KiB/s | 113.2 KiB | 00m00s [ 6/16] mpdecimal-0:2.5.1-9.fc40.x86_64 100% | 2.5 MiB/s | 88.6 KiB | 00m00s [ 7/16] python-rpm-macros-0:3.12-9.fc41 100% | 600.7 KiB/s | 18.0 KiB | 00m00s [ 8/16] python3-rpm-generators-0:14-10. 100% | 925.1 KiB/s | 29.6 KiB | 00m00s [ 9/16] python3-rpm-macros-0:3.12-9.fc4 100% | 284.4 KiB/s | 12.8 KiB | 00m00s [10/16] python3-libs-0:3.12.2-3.fc41.x8 100% | 21.4 MiB/s | 9.1 MiB | 00m00s [11/16] tzdata-0:2024a-4.fc41.noarch 100% | 4.8 MiB/s | 716.2 KiB | 00m00s [12/16] python3-iniconfig-0:1.1.1-20.fc 100% | 2.0 MiB/s | 18.5 KiB | 00m00s [13/16] python3-packaging-0:24.0-1.fc41 100% | 11.4 MiB/s | 116.9 KiB | 00m00s [14/16] python3-0:3.12.2-3.fc41.x86_64 100% | 906.4 KiB/s | 27.2 KiB | 00m00s [15/16] pyproject-rpm-macros-0:1.12.0-1 100% | 2.6 MiB/s | 42.1 KiB | 00m00s [16/16] python-pip-wheel-0:24.0-2.fc41. 100% | 61.5 MiB/s | 1.5 MiB | 00m00s -------------------------------------------------------------------------------- [16/16] Total 100% | 28.6 MiB/s | 14.0 MiB | 00m00s Running transaction [ 1/18] Verify package files 100% | 280.0 B/s | 16.0 B | 00m00s [ 2/18] Prepare transaction 100% | 307.0 B/s | 16.0 B | 00m00s [ 3/18] Installing python-rpm-macros-0: 100% | 22.3 MiB/s | 22.8 KiB | 00m00s [ 4/18] Installing python3-rpm-macros-0 100% | 0.0 B/s | 6.7 KiB | 00m00s [ 5/18] Installing pyproject-rpm-macros 100% | 98.9 MiB/s | 101.3 KiB | 00m00s [ 6/18] Installing python-pip-wheel-0:2 100% | 218.3 MiB/s | 1.5 MiB | 00m00s [ 7/18] Installing tzdata-0:2024a-4.fc4 100% | 26.8 MiB/s | 1.9 MiB | 00m00s [ 8/18] Installing mpdecimal-0:2.5.1-9. 100% | 98.6 MiB/s | 202.0 KiB | 00m00s [ 9/18] Installing libb2-0:0.98.1-11.fc 100% | 42.3 MiB/s | 43.3 KiB | 00m00s [10/18] Installing expat-0:2.6.2-1.fc41 100% | 138.1 MiB/s | 282.9 KiB | 00m00s [11/18] Installing python3-0:3.12.2-3.f 100% | 4.7 MiB/s | 33.6 KiB | 00m00s [12/18] Installing python3-libs-0:3.12. 100% | 188.6 MiB/s | 41.3 MiB | 00m00s [13/18] Installing python3-packaging-0: 100% | 106.4 MiB/s | 435.6 KiB | 00m00s [14/18] Installing python3-rpm-generato 100% | 81.0 MiB/s | 82.9 KiB | 00m00s [15/18] Installing python3-pluggy-0:1.4 100% | 95.0 MiB/s | 194.6 KiB | 00m00s [16/18] Installing python3-iniconfig-0: 100% | 7.6 MiB/s | 23.4 KiB | 00m00s [17/18] Installing python3-pytest-0:8.1 100% | 232.1 MiB/s | 16.0 MiB | 00m00s [18/18] Installing python3-devel-0:3.12 100% | 26.0 MiB/s | 1.3 MiB | 00m00s >>> Running trigger-install scriptlet: glibc-common-0:2.39.9000-10.fc41.x86_64 >>> Stop trigger-install scriptlet: glibc-common-0:2.39.9000-10.fc41.x86_64 Warning: skipped PGP checks for 6 package(s). Finish: build setup for python-bioframe-0.6.4-1.fc41.src.rpm Start: rpmbuild python-bioframe-0.6.4-1.fc41.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1712448000 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.rj7iGB + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf bioframe-0.6.4 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/bioframe-0.6.4.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd bioframe-0.6.4 + rm -rf /builddir/build/BUILD/bioframe-0.6.4-SPECPARTS + /usr/bin/mkdir -p /builddir/build/BUILD/bioframe-0.6.4-SPECPARTS + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + RPM_EC=0 ++ jobs -p + exit 0 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.vVsVEu + umask 022 + cd /builddir/build/BUILD + cd bioframe-0.6.4 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + echo '(python3dist(tomli) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/bioframe-0.6.4/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + TMPDIR=/builddir/build/BUILD/bioframe-0.6.4/.pyproject-builddir + RPM_TOXENV=py312 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/bioframe-0.6.4/pyproject-wheeldir --output /builddir/build/BUILD/python-bioframe-0.6.4-1.fc41.x86_64-pyproject-buildrequires Handling hatchling from build-system.requires Requirement not satisfied: hatchling Handling hatch-vcs from build-system.requires Requirement not satisfied: hatch-vcs Exiting dependency generation pass: build backend + cat /builddir/build/BUILD/python-bioframe-0.6.4-1.fc41.x86_64-pyproject-buildrequires + rm -rfv '*.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-bioframe-0.6.4-1.fc41.buildreqs.nosrc.rpm INFO: Going to install missing dynamic buildrequires Updating and loading repositories: fedora 100% | 781.2 KiB/s | 21.1 KiB | 00m00s Copr repository 100% | 52.9 KiB/s | 1.5 KiB | 00m00s Repositories loaded. Package "pyproject-rpm-macros-1.12.0-1.fc41.noarch" is already installed. Package "python3-devel-3.12.2-3.fc41.x86_64" is already installed. Package "python3-pytest-8.1.1-1.fc41.noarch" is already installed.Package Arch Version Repository Size Installing: python3-hatch-vcs noarch 0.4.0-3.fc41 copr_base 33.5 KiB python3-hatchling noarch 1.21.1-1.fc40 fedora 637.3 KiB python3-pip noarch 24.0-2.fc41 copr_base 14.2 MiB Installing dependencies: python3-editables noarch 0.5-5.fc41 copr_base 20.8 KiB python3-pathspec noarch 0.12.1-4.fc41 copr_base 194.5 KiB python3-setuptools noarch 69.2.0-1.fc41 copr_base 7.2 MiB python3-setuptools_scm noarch 8.0.4-3.fc41 copr_base 307.7 KiB python3-trove-classifiers noarch 2024.3.3-1.fc41 copr_base 90.7 KiB python3-typing-extensions noarch 4.10.0-1.fc41 fedora 408.9 KiB Transaction Summary: Installing: 9 packages Total size of inbound packages is 5 MiB. Need to download 5 MiB. After this operation 23 MiB will be used (install 23 MiB, remove 0 B). Package "python3-packaging-24.0-1.fc41.noarch" is already installed. [1/9] python3-hatch-vcs-0:0.4.0-3.fc41. 100% | 542.2 KiB/s | 23.9 KiB | 00m00s [2/9] python3-setuptools_scm-0:8.0.4-3. 100% | 4.4 MiB/s | 98.6 KiB | 00m00s [3/9] python3-pip-0:24.0-2.fc41.noarch 100% | 30.8 MiB/s | 2.9 MiB | 00m00s [4/9] python3-editables-0:0.5-5.fc41.no 100% | 2.2 MiB/s | 19.9 KiB | 00m00s [5/9] python3-pathspec-0:0.12.1-4.fc41. 100% | 4.5 MiB/s | 55.8 KiB | 00m00s [6/9] python3-trove-classifiers-0:2024. 100% | 2.6 MiB/s | 26.8 KiB | 00m00s [7/9] python3-setuptools-0:69.2.0-1.fc4 100% | 30.9 MiB/s | 1.4 MiB | 00m00s [8/9] python3-hatchling-0:1.21.1-1.fc40 100% | 579.2 KiB/s | 225.9 KiB | 00m00s [9/9] python3-typing-extensions-0:4.10. 100% | 235.7 KiB/s | 78.9 KiB | 00m00s -------------------------------------------------------------------------------- [9/9] Total 100% | 11.2 MiB/s | 4.9 MiB | 00m00s Running transaction [ 1/11] Verify package files 100% | 428.0 B/s | 9.0 B | 00m00s [ 2/11] Prepare transaction 100% | 272.0 B/s | 9.0 B | 00m00s [ 3/11] Installing python3-setuptools-0 100% | 119.9 MiB/s | 7.3 MiB | 00m00s [ 4/11] Installing python3-trove-classi 100% | 45.9 MiB/s | 93.9 KiB | 00m00s [ 5/11] Installing python3-pathspec-0:0 100% | 65.5 MiB/s | 201.3 KiB | 00m00s [ 6/11] Installing python3-editables-0: 100% | 11.8 MiB/s | 24.1 KiB | 00m00s [ 7/11] Installing python3-hatchling-0: 100% | 44.6 MiB/s | 685.3 KiB | 00m00s [ 8/11] Installing python3-typing-exten 100% | 200.8 MiB/s | 411.3 KiB | 00m00s [ 9/11] Installing python3-setuptools_s 100% | 63.8 MiB/s | 326.9 KiB | 00m00s [10/11] Installing python3-hatch-vcs-0: 100% | 7.7 MiB/s | 39.5 KiB | 00m00s [11/11] Installing python3-pip-0:24.0-2 100% | 104.5 MiB/s | 14.5 MiB | 00m00s >>> Running trigger-install scriptlet: glibc-common-0:2.39.9000-10.fc41.x86_64 >>> Stop trigger-install scriptlet: glibc-common-0:2.39.9000-10.fc41.x86_64 Warning: skipped PGP checks for 7 package(s). Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1712448000 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.IYmB04 + umask 022 + cd /builddir/build/BUILD + cd bioframe-0.6.4 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + echo '(python3dist(tomli) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/bioframe-0.6.4/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + TMPDIR=/builddir/build/BUILD/bioframe-0.6.4/.pyproject-builddir + RPM_TOXENV=py312 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/bioframe-0.6.4/pyproject-wheeldir --output /builddir/build/BUILD/python-bioframe-0.6.4-1.fc41.x86_64-pyproject-buildrequires Handling hatchling from build-system.requires Requirement satisfied: hatchling (installed: hatchling 1.21.1) Handling hatch-vcs from build-system.requires Requirement satisfied: hatch-vcs (installed: hatch-vcs 0.4.0) Handling importlib-metadata; python_version < '3.8' from hook generated metadata: Requires-Dist (bioframe) Ignoring alien requirement: importlib-metadata; python_version < '3.8' Handling importlib-resources; python_version < '3.9' from hook generated metadata: Requires-Dist (bioframe) Ignoring alien requirement: importlib-resources; python_version < '3.9' Handling matplotlib from hook generated metadata: Requires-Dist (bioframe) Requirement not satisfied: matplotlib Handling numpy>=1.10 from hook generated metadata: Requires-Dist (bioframe) Requirement not satisfied: numpy>=1.10 Handling pandas>=1.3 from hook generated metadata: Requires-Dist (bioframe) Requirement not satisfied: pandas>=1.3 Handling pyyaml from hook generated metadata: Requires-Dist (bioframe) Requirement not satisfied: pyyaml Handling requests from hook generated metadata: Requires-Dist (bioframe) Requirement not satisfied: requests Handling typing-extensions; python_version < '3.9' from hook generated metadata: Requires-Dist (bioframe) Ignoring alien requirement: typing-extensions; python_version < '3.9' Handling biopython; extra == 'dev' from hook generated metadata: Requires-Dist (bioframe) Ignoring alien requirement: biopython; extra == 'dev' Handling isort; extra == 'dev' from hook generated metadata: Requires-Dist (bioframe) Ignoring alien requirement: isort; extra == 'dev' Handling pybbi; extra == 'dev' from hook generated metadata: Requires-Dist (bioframe) Ignoring alien requirement: pybbi; extra == 'dev' Handling pysam; extra == 'dev' from hook generated metadata: Requires-Dist (bioframe) Ignoring alien requirement: pysam; extra == 'dev' Handling pytest; extra == 'dev' from hook generated metadata: Requires-Dist (bioframe) Ignoring alien requirement: pytest; extra == 'dev' Handling ruff; extra == 'dev' from hook generated metadata: Requires-Dist (bioframe) Ignoring alien requirement: ruff; extra == 'dev' Handling autodocsumm; extra == 'docs' from hook generated metadata: Requires-Dist (bioframe) Ignoring alien requirement: autodocsumm; extra == 'docs' Handling jinja2; extra == 'docs' from hook generated metadata: Requires-Dist (bioframe) Ignoring alien requirement: jinja2; extra == 'docs' Handling myst-nb; extra == 'docs' from hook generated metadata: Requires-Dist (bioframe) Ignoring alien requirement: myst-nb; extra == 'docs' Handling sphinx; extra == 'docs' from hook generated metadata: Requires-Dist (bioframe) Ignoring alien requirement: sphinx; extra == 'docs' Handling sphinx-autobuild; extra == 'docs' from hook generated metadata: Requires-Dist (bioframe) Ignoring alien requirement: sphinx-autobuild; extra == 'docs' Handling sphinx-rtd-theme; extra == 'docs' from hook generated metadata: Requires-Dist (bioframe) Ignoring alien requirement: sphinx-rtd-theme; extra == 'docs' Handling pytest; extra == 'test' from hook generated metadata: Requires-Dist (bioframe) Ignoring alien requirement: pytest; extra == 'test' + cat /builddir/build/BUILD/python-bioframe-0.6.4-1.fc41.x86_64-pyproject-buildrequires + rm -rfv bioframe-0.6.4.dist-info/ removed 'bioframe-0.6.4.dist-info/METADATA' removed directory 'bioframe-0.6.4.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-bioframe-0.6.4-1.fc41.buildreqs.nosrc.rpm INFO: Going to install missing dynamic buildrequires Updating and loading repositories: fedora 100% | 781.2 KiB/s | 21.1 KiB | 00m00s Copr repository 100% | 39.4 KiB/s | 1.5 KiB | 00m00s Repositories loaded. Package "pyproject-rpm-macros-1.12.0-1.fc41.noarch" is already installed. Package "python3-devel-3.12.2-3.fc41.x86_64" is already installed. Package "python3-pytest-8.1.1-1.fc41.noarch" is already installed. Package "python3-hatch-vcs-0.4.0-3.fc41.noarch" is already installed. Package "python3-hatchling-1.21.1-1.fc40.noarch" is already installed. Package "python3-packaging-24.0-1.fc41.noarch" is already installed. Package "python3-pip-24.0-2.fc41.noarch" is already installed. Package Arch Version Repository Size Installing: python3-matplotlib x86_64 3.8.4-1.fc41 copr_base 20.2 MiB python3-numpy x86_64 1:1.26.4-2.fc41 copr_base 43.9 MiB python3-pandas x86_64 2.2.1-2.fc41 fedora 42.4 MiB python3-pyyaml x86_64 6.0.1-14.fc40 fedora 786.4 KiB python3-requests noarch 2.31.0-3.fc40 fedora 462.4 KiB Installing dependencies: abattis-cantarell-vf-fonts noarch 0.301-12.fc40 fedora 192.7 KiB cairo x86_64 1.18.0-3.fc40 fedora 1.7 MiB default-fonts-core-sans noarch 4.0-12.fc40 fedora 11.9 KiB dejavu-sans-fonts noarch 2.37-23.fc40 fedora 5.5 MiB flexiblas x86_64 3.4.2-1.fc41 fedora 46.9 KiB flexiblas-netlib x86_64 3.4.2-1.fc41 fedora 10.4 MiB flexiblas-openblas-openmp x86_64 3.4.2-1.fc41 fedora 39.3 KiB fontconfig x86_64 2.15.0-4.fc40 fedora 767.3 KiB fonts-filesystem noarch 1:2.0.5-14.fc40 fedora 0.0 B freetype x86_64 2.13.2-5.fc40 fedora 842.6 KiB fribidi x86_64 1.0.13-4.fc40 fedora 365.3 KiB glib2 x86_64 2.80.0-1.fc41 fedora 14.4 MiB gnutls x86_64 3.8.5-1.fc41 fedora 3.2 MiB google-noto-fonts-common noarch 20240401-1.fc41 fedora 17.5 KiB google-noto-sans-vf-fonts noarch 20240401-1.fc41 fedora 1.2 MiB graphite2 x86_64 1.3.14-15.fc40 fedora 192.0 KiB harfbuzz x86_64 8.4.0-1.fc41 fedora 2.6 MiB jbigkit-libs x86_64 2.1-29.fc40 fedora 117.6 KiB lcms2 x86_64 2.16-3.fc40 fedora 420.9 KiB libX11 x86_64 1.8.8-1.fc41 fedora 1.3 MiB libX11-common noarch 1.8.8-1.fc41 fedora 1.1 MiB libXau x86_64 1.0.11-6.fc40 fedora 66.9 KiB libXext x86_64 1.3.6-1.fc40 fedora 90.1 KiB libXft x86_64 2.3.8-6.fc40 fedora 164.5 KiB libXrender x86_64 0.9.11-6.fc40 fedora 50.1 KiB libgfortran x86_64 14.0.1-0.13.fc41 fedora 2.9 MiB libimagequant x86_64 4.0.3-3.fc40 fedora 690.3 KiB libjpeg-turbo x86_64 3.0.2-1.fc40 fedora 776.9 KiB liblerc x86_64 4.0.0-6.fc40 fedora 603.5 KiB libpng x86_64 2:1.6.40-3.fc40 fedora 241.8 KiB libqhull_r x86_64 1:8.0.2-4.fc40 fedora 475.4 KiB libquadmath x86_64 14.0.1-0.13.fc41 fedora 329.9 KiB libraqm x86_64 0.8.0-7.fc40 fedora 28.6 KiB libtiff x86_64 4.6.0-2.fc40 fedora 1.1 MiB libwebp x86_64 1.3.2-5.fc41 fedora 793.6 KiB libxcb x86_64 1.16.1-1.fc41 fedora 1.1 MiB libxslt x86_64 1.1.39-3.fc40 fedora 481.6 KiB libyaml x86_64 0.2.5-14.fc40 fedora 130.4 KiB nettle x86_64 3.9.1-6.fc40 fedora 790.1 KiB openblas x86_64 0.3.26-4.fc40 fedora 96.0 KiB openblas-openmp x86_64 0.3.26-4.fc40 fedora 38.9 MiB openjpeg2 x86_64 2.5.2-1.fc41 fedora 441.7 KiB pixman x86_64 0.43.4-1.fc41 fedora 710.1 KiB python3-Bottleneck x86_64 1.3.7-5.fc41 copr_base 625.9 KiB python3-appdirs noarch 1.4.4-13.fc40 fedora 69.0 KiB python3-brotli x86_64 1.1.0-3.fc40 fedora 824.1 KiB python3-cairo x86_64 1.25.1-3.fc41 copr_base 492.5 KiB python3-charset-normalizer noarch 3.3.2-3.fc41 copr_base 312.7 KiB python3-contourpy x86_64 1.2.0-3.fc41 copr_base 779.1 KiB python3-cycler noarch 0.11.0-11.fc40 fedora 38.2 KiB python3-dateutil noarch 1:2.8.2-13.fc41 copr_base 877.8 KiB python3-fonttools x86_64 4.50.0-1.fc41 copr_base 18.0 MiB python3-fs noarch 2.4.16-7.fc41 copr_base 1.3 MiB python3-idna noarch 3.6-4.fc41 copr_base 502.3 KiB python3-kiwisolver x86_64 1.4.5-3.fc41 copr_base 150.0 KiB python3-lxml x86_64 5.2.1-1.fc41 fedora 4.9 MiB python3-matplotlib-data noarch 3.8.4-1.fc41 copr_base 740.9 KiB python3-matplotlib-data-fonts noarch 3.8.4-1.fc41 copr_base 7.9 MiB python3-matplotlib-tk x86_64 3.8.4-1.fc41 copr_base 119.5 KiB python3-numexpr x86_64 2.8.5-4.fc40 fedora 568.3 KiB python3-numpy-f2py x86_64 1:1.26.4-2.fc41 copr_base 2.7 MiB python3-olefile noarch 0.47-3.fc40 fedora 343.2 KiB python3-pillow x86_64 10.3.0-1.fc41 copr_base 3.3 MiB python3-pillow-tk x86_64 10.3.0-1.fc41 copr_base 54.4 KiB python3-pooch noarch 1.5.2-15.fc41 copr_base 548.7 KiB python3-pyparsing noarch 3.1.2-2.fc41 copr_base 1.0 MiB python3-pytz noarch 2024.1-1.fc41 copr_base 225.8 KiB python3-scipy x86_64 1.11.3-6.fc40 fedora 62.6 MiB python3-six noarch 1.16.0-20.fc41 copr_base 117.7 KiB python3-tkinter x86_64 3.12.2-3.fc41 fedora 2.2 MiB python3-urllib3 noarch 1.26.18-4.fc41 copr_base 996.2 KiB tcl x86_64 1:8.6.14-1.fc41 fedora 4.2 MiB tk x86_64 1:8.6.14-1.fc41 fedora 3.6 MiB xml-common noarch 0.6.3-63.fc40 fedora 78.4 KiB Transaction Summary: Installing: 79 packages Total size of inbound packages is 73 MiB. Need to download 73 MiB. After this operation 323 MiB will be used (install 323 MiB, remove 0 B). [ 1/79] python3-requests-0:2.31.0-3.fc4 100% | 325.5 KiB/s | 151.7 KiB | 00m00s [ 2/79] python3-pyyaml-0:6.0.1-14.fc40. 100% | 458.2 KiB/s | 232.7 KiB | 00m01s [ 3/79] python3-matplotlib-0:3.8.4-1.fc 100% | 31.4 MiB/s | 4.2 MiB | 00m00s [ 4/79] python3-numpy-1:1.26.4-2.fc41.x 100% | 48.0 MiB/s | 7.2 MiB | 00m00s [ 5/79] python3-numexpr-0:2.8.5-4.fc40. 100% | 1.1 MiB/s | 167.5 KiB | 00m00s [ 6/79] libyaml-0:0.2.5-14.fc40.x86_64 100% | 553.2 KiB/s | 59.2 KiB | 00m00s [ 7/79] freetype-0:2.13.2-5.fc40.x86_64 100% | 1.7 MiB/s | 409.7 KiB | 00m00s [ 8/79] python3-pandas-0:2.2.1-2.fc41.x 100% | 7.4 MiB/s | 8.0 MiB | 00m01s [ 9/79] dejavu-sans-fonts-0:2.37-23.fc4 100% | 4.0 MiB/s | 1.3 MiB | 00m00s [10/79] libqhull_r-1:8.0.2-4.fc40.x86_6 100% | 1.8 MiB/s | 200.7 KiB | 00m00s [11/79] python3-cycler-0:0.11.0-11.fc40 100% | 211.5 KiB/s | 20.9 KiB | 00m00s [12/79] fonts-filesystem-1:2.0.5-14.fc4 100% | 91.6 KiB/s | 8.2 KiB | 00m00s [13/79] harfbuzz-0:8.4.0-1.fc41.x86_64 100% | 11.0 MiB/s | 1.0 MiB 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134.5 MiB/s | 42.6 MiB | 00m00s >>> Running post-transaction scriptlet: fontconfig-0:2.15.0-4.fc40.x86_64 >>> Stop post-transaction scriptlet: fontconfig-0:2.15.0-4.fc40.x86_64 >>> Running trigger-install scriptlet: glibc-common-0:2.39.9000-10.fc41.x86_64 >>> Stop trigger-install scriptlet: glibc-common-0:2.39.9000-10.fc41.x86_64 >>> Running trigger-install scriptlet: info-0:7.1-2.fc40.x86_64 >>> Stop trigger-install scriptlet: info-0:7.1-2.fc40.x86_64 >>> Running trigger-install scriptlet: glib2-0:2.80.0-1.fc41.x86_64 >>> Stop trigger-install scriptlet: glib2-0:2.80.0-1.fc41.x86_64 >>> Running trigger-install scriptlet: fontconfig-0:2.15.0-4.fc40.x86_64 >>> Stop trigger-install scriptlet: fontconfig-0:2.15.0-4.fc40.x86_64 Warning: skipped PGP checks for 22 package(s). Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1712448000 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.ljbzad + umask 022 + cd /builddir/build/BUILD + cd bioframe-0.6.4 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + echo '(python3dist(tomli) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/bioframe-0.6.4/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + TMPDIR=/builddir/build/BUILD/bioframe-0.6.4/.pyproject-builddir + RPM_TOXENV=py312 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/bioframe-0.6.4/pyproject-wheeldir --output /builddir/build/BUILD/python-bioframe-0.6.4-1.fc41.x86_64-pyproject-buildrequires Handling hatchling from build-system.requires Requirement satisfied: hatchling (installed: hatchling 1.21.1) Handling hatch-vcs from build-system.requires Requirement satisfied: hatch-vcs (installed: hatch-vcs 0.4.0) Handling importlib-metadata; python_version < '3.8' from hook generated metadata: Requires-Dist (bioframe) Ignoring alien requirement: importlib-metadata; python_version < '3.8' Handling importlib-resources; python_version < '3.9' from hook generated metadata: Requires-Dist (bioframe) Ignoring alien requirement: importlib-resources; python_version < '3.9' Handling matplotlib from hook generated metadata: Requires-Dist (bioframe) Requirement satisfied: matplotlib (installed: matplotlib 3.8.4) Handling numpy>=1.10 from hook generated metadata: Requires-Dist (bioframe) Requirement satisfied: numpy>=1.10 (installed: numpy 1.26.4) Handling pandas>=1.3 from hook generated metadata: Requires-Dist (bioframe) Requirement satisfied: pandas>=1.3 (installed: pandas 2.2.1) Handling pyyaml from hook generated metadata: Requires-Dist (bioframe) Requirement satisfied: pyyaml (installed: pyyaml 6.0.1) Handling requests from hook generated metadata: Requires-Dist (bioframe) Requirement satisfied: requests (installed: requests 2.31.0) Handling typing-extensions; python_version < '3.9' from hook generated metadata: Requires-Dist (bioframe) Ignoring alien requirement: typing-extensions; python_version < '3.9' Handling biopython; extra == 'dev' from hook generated metadata: Requires-Dist (bioframe) Ignoring alien requirement: biopython; extra == 'dev' Handling isort; extra == 'dev' from hook generated metadata: Requires-Dist (bioframe) Ignoring alien requirement: isort; extra == 'dev' Handling pybbi; extra == 'dev' from hook generated metadata: Requires-Dist (bioframe) Ignoring alien requirement: pybbi; extra == 'dev' Handling pysam; extra == 'dev' from hook generated metadata: Requires-Dist (bioframe) Ignoring alien requirement: pysam; extra == 'dev' Handling pytest; extra == 'dev' from hook generated metadata: Requires-Dist (bioframe) Ignoring alien requirement: pytest; extra == 'dev' Handling ruff; extra == 'dev' from hook generated metadata: Requires-Dist (bioframe) Ignoring alien requirement: ruff; extra == 'dev' Handling autodocsumm; extra == 'docs' from hook generated metadata: Requires-Dist (bioframe) Ignoring alien requirement: autodocsumm; extra == 'docs' Handling jinja2; extra == 'docs' from hook generated metadata: Requires-Dist (bioframe) Ignoring alien requirement: jinja2; extra == 'docs' Handling myst-nb; extra == 'docs' from hook generated metadata: Requires-Dist (bioframe) Ignoring alien requirement: myst-nb; extra == 'docs' Handling sphinx; extra == 'docs' from hook generated metadata: Requires-Dist (bioframe) Ignoring alien requirement: sphinx; extra == 'docs' Handling sphinx-autobuild; extra == 'docs' from hook generated metadata: Requires-Dist (bioframe) Ignoring alien requirement: sphinx-autobuild; extra == 'docs' Handling sphinx-rtd-theme; extra == 'docs' from hook generated metadata: Requires-Dist (bioframe) Ignoring alien requirement: sphinx-rtd-theme; extra == 'docs' Handling pytest; extra == 'test' from hook generated metadata: Requires-Dist (bioframe) Ignoring alien requirement: pytest; extra == 'test' + cat /builddir/build/BUILD/python-bioframe-0.6.4-1.fc41.x86_64-pyproject-buildrequires + rm -rfv bioframe-0.6.4.dist-info/ removed 'bioframe-0.6.4.dist-info/METADATA' removed directory 'bioframe-0.6.4.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-bioframe-0.6.4-1.fc41.buildreqs.nosrc.rpm INFO: Going to install missing dynamic buildrequires Updating and loading repositories: fedora 100% | 753.2 KiB/s | 21.1 KiB | 00m00s Copr repository 100% | 52.9 KiB/s | 1.5 KiB | 00m00s Repositories loaded. Package "pyproject-rpm-macros-1.12.0-1.fc41.noarch" is already installed. Package "python3-devel-3.12.2-3.fc41.x86_64" is already installed. Package "python3-pytest-8.1.1-1.fc41.noarch" is already installed. Nothing to do. Package "python3-hatch-vcs-0.4.0-3.fc41.noarch" is already installed. Package "python3-hatchling-1.21.1-1.fc40.noarch" is already installed. Package "python3-matplotlib-3.8.4-1.fc41.x86_64" is already installed. Package "python3-numpy-1:1.26.4-2.fc41.x86_64" is already installed. Package "python3-packaging-24.0-1.fc41.noarch" is already installed. Package "python3-pandas-2.2.1-2.fc41.x86_64" is already installed. Package "python3-pip-24.0-2.fc41.noarch" is already installed. Package "python3-pyyaml-6.0.1-14.fc40.x86_64" is already installed. Package "python3-requests-2.31.0-3.fc40.noarch" is already installed. Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1712448000 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.rzf9OY + umask 022 + cd /builddir/build/BUILD + cd bioframe-0.6.4 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + echo '(python3dist(tomli) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/bioframe-0.6.4/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + TMPDIR=/builddir/build/BUILD/bioframe-0.6.4/.pyproject-builddir + RPM_TOXENV=py312 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/bioframe-0.6.4/pyproject-wheeldir --output /builddir/build/BUILD/python-bioframe-0.6.4-1.fc41.x86_64-pyproject-buildrequires Handling hatchling from build-system.requires Requirement satisfied: hatchling (installed: hatchling 1.21.1) Handling hatch-vcs from build-system.requires Requirement satisfied: hatch-vcs (installed: hatch-vcs 0.4.0) Handling importlib-metadata; python_version < '3.8' from hook generated metadata: Requires-Dist (bioframe) Ignoring alien requirement: importlib-metadata; python_version < '3.8' Handling importlib-resources; python_version < '3.9' from hook generated metadata: Requires-Dist (bioframe) Ignoring alien requirement: importlib-resources; python_version < '3.9' Handling matplotlib from hook generated metadata: Requires-Dist (bioframe) Requirement satisfied: matplotlib (installed: matplotlib 3.8.4) Handling numpy>=1.10 from hook generated metadata: Requires-Dist (bioframe) Requirement satisfied: numpy>=1.10 (installed: numpy 1.26.4) Handling pandas>=1.3 from hook generated metadata: Requires-Dist (bioframe) Requirement satisfied: pandas>=1.3 (installed: pandas 2.2.1) Handling pyyaml from hook generated metadata: Requires-Dist (bioframe) Requirement satisfied: pyyaml (installed: pyyaml 6.0.1) Handling requests from hook generated metadata: Requires-Dist (bioframe) Requirement satisfied: requests (installed: requests 2.31.0) Handling typing-extensions; python_version < '3.9' from hook generated metadata: Requires-Dist (bioframe) Ignoring alien requirement: typing-extensions; python_version < '3.9' Handling biopython; extra == 'dev' from hook generated metadata: Requires-Dist (bioframe) Ignoring alien requirement: biopython; extra == 'dev' Handling isort; extra == 'dev' from hook generated metadata: Requires-Dist (bioframe) Ignoring alien requirement: isort; extra == 'dev' Handling pybbi; extra == 'dev' from hook generated metadata: Requires-Dist (bioframe) Ignoring alien requirement: pybbi; extra == 'dev' Handling pysam; extra == 'dev' from hook generated metadata: Requires-Dist (bioframe) Ignoring alien requirement: pysam; extra == 'dev' Handling pytest; extra == 'dev' from hook generated metadata: Requires-Dist (bioframe) Ignoring alien requirement: pytest; extra == 'dev' Handling ruff; extra == 'dev' from hook generated metadata: Requires-Dist (bioframe) Ignoring alien requirement: ruff; extra == 'dev' Handling autodocsumm; extra == 'docs' from hook generated metadata: Requires-Dist (bioframe) Ignoring alien requirement: autodocsumm; extra == 'docs' Handling jinja2; extra == 'docs' from hook generated metadata: Requires-Dist (bioframe) Ignoring alien requirement: jinja2; extra == 'docs' Handling myst-nb; extra == 'docs' from hook generated metadata: Requires-Dist (bioframe) Ignoring alien requirement: myst-nb; extra == 'docs' Handling sphinx; extra == 'docs' from hook generated metadata: Requires-Dist (bioframe) Ignoring alien requirement: sphinx; extra == 'docs' Handling sphinx-autobuild; extra == 'docs' from hook generated metadata: Requires-Dist (bioframe) Ignoring alien requirement: sphinx-autobuild; extra == 'docs' Handling sphinx-rtd-theme; extra == 'docs' from hook generated metadata: Requires-Dist (bioframe) Ignoring alien requirement: sphinx-rtd-theme; extra == 'docs' Handling pytest; extra == 'test' from hook generated metadata: Requires-Dist (bioframe) Ignoring alien requirement: pytest; extra == 'test' + cat /builddir/build/BUILD/python-bioframe-0.6.4-1.fc41.x86_64-pyproject-buildrequires + rm -rfv bioframe-0.6.4.dist-info/ removed 'bioframe-0.6.4.dist-info/METADATA' removed directory 'bioframe-0.6.4.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.riYETP + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd bioframe-0.6.4 + mkdir -p /builddir/build/BUILD/bioframe-0.6.4/.pyproject-builddir + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + TMPDIR=/builddir/build/BUILD/bioframe-0.6.4/.pyproject-builddir + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_wheel.py /builddir/build/BUILD/bioframe-0.6.4/pyproject-wheeldir Processing /builddir/build/BUILD/bioframe-0.6.4 Preparing metadata (pyproject.toml): started Running command Preparing metadata (pyproject.toml) Preparing metadata (pyproject.toml): finished with status 'done' Building wheels for collected packages: bioframe Building wheel for bioframe (pyproject.toml): started Running command Building wheel for bioframe (pyproject.toml) Building wheel for bioframe (pyproject.toml): finished with status 'done' Created wheel for bioframe: filename=bioframe-0.6.4-py2.py3-none-any.whl size=143826 sha256=c513d4a762cd5cc13f7d5c3a0e811e66e8d363e6919c4c380ebe4978e4d4bafe Stored in directory: /builddir/.cache/pip/wheels/e3/aa/46/8684c207aa038e3b2ad0381a54db11c7929e04eadc3b9cbfb4 Successfully built bioframe + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.vcqXIY + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/python-bioframe-0.6.4-1.fc41.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/python-bioframe-0.6.4-1.fc41.x86_64 ++ dirname /builddir/build/BUILDROOT/python-bioframe-0.6.4-1.fc41.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/python-bioframe-0.6.4-1.fc41.x86_64 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd bioframe-0.6.4 ++ ls /builddir/build/BUILD/bioframe-0.6.4/pyproject-wheeldir/bioframe-0.6.4-py2.py3-none-any.whl ++ xargs basename --multiple ++ sed -E 's/([^-]+)-([^-]+)-.+\.whl/\1==\2/' + specifier=bioframe==0.6.4 + '[' -z bioframe==0.6.4 ']' + TMPDIR=/builddir/build/BUILD/bioframe-0.6.4/.pyproject-builddir + /usr/bin/python3 -m pip install --root /builddir/build/BUILDROOT/python-bioframe-0.6.4-1.fc41.x86_64 --prefix /usr --no-deps --disable-pip-version-check --progress-bar off --verbose --ignore-installed --no-warn-script-location --no-index --no-cache-dir --find-links /builddir/build/BUILD/bioframe-0.6.4/pyproject-wheeldir bioframe==0.6.4 Using pip 24.0 from /usr/lib/python3.12/site-packages/pip (python 3.12) Looking in links: /builddir/build/BUILD/bioframe-0.6.4/pyproject-wheeldir Processing ./pyproject-wheeldir/bioframe-0.6.4-py2.py3-none-any.whl Installing collected packages: bioframe Successfully installed bioframe-0.6.4 + '[' -d /builddir/build/BUILDROOT/python-bioframe-0.6.4-1.fc41.x86_64/usr/bin ']' + rm -f /builddir/build/BUILD/python-bioframe-0.6.4-1.fc41.x86_64-pyproject-ghost-distinfo + site_dirs=() + '[' -d /builddir/build/BUILDROOT/python-bioframe-0.6.4-1.fc41.x86_64/usr/lib/python3.12/site-packages ']' + site_dirs+=("/usr/lib/python3.12/site-packages") + '[' /builddir/build/BUILDROOT/python-bioframe-0.6.4-1.fc41.x86_64/usr/lib64/python3.12/site-packages '!=' /builddir/build/BUILDROOT/python-bioframe-0.6.4-1.fc41.x86_64/usr/lib/python3.12/site-packages ']' + '[' -d /builddir/build/BUILDROOT/python-bioframe-0.6.4-1.fc41.x86_64/usr/lib64/python3.12/site-packages ']' + for site_dir in ${site_dirs[@]} + for distinfo in /builddir/build/BUILDROOT/python-bioframe-0.6.4-1.fc41.x86_64$site_dir/*.dist-info + echo '%ghost /usr/lib/python3.12/site-packages/bioframe-0.6.4.dist-info' + sed -i s/pip/rpm/ /builddir/build/BUILDROOT/python-bioframe-0.6.4-1.fc41.x86_64/usr/lib/python3.12/site-packages/bioframe-0.6.4.dist-info/INSTALLER + PYTHONPATH=/usr/lib/rpm/redhat + /usr/bin/python3 -B /usr/lib/rpm/redhat/pyproject_preprocess_record.py --buildroot /builddir/build/BUILDROOT/python-bioframe-0.6.4-1.fc41.x86_64 --record /builddir/build/BUILDROOT/python-bioframe-0.6.4-1.fc41.x86_64/usr/lib/python3.12/site-packages/bioframe-0.6.4.dist-info/RECORD --output /builddir/build/BUILD/python-bioframe-0.6.4-1.fc41.x86_64-pyproject-record + rm -fv /builddir/build/BUILDROOT/python-bioframe-0.6.4-1.fc41.x86_64/usr/lib/python3.12/site-packages/bioframe-0.6.4.dist-info/RECORD removed '/builddir/build/BUILDROOT/python-bioframe-0.6.4-1.fc41.x86_64/usr/lib/python3.12/site-packages/bioframe-0.6.4.dist-info/RECORD' + rm -fv /builddir/build/BUILDROOT/python-bioframe-0.6.4-1.fc41.x86_64/usr/lib/python3.12/site-packages/bioframe-0.6.4.dist-info/REQUESTED removed '/builddir/build/BUILDROOT/python-bioframe-0.6.4-1.fc41.x86_64/usr/lib/python3.12/site-packages/bioframe-0.6.4.dist-info/REQUESTED' ++ wc -l /builddir/build/BUILD/python-bioframe-0.6.4-1.fc41.x86_64-pyproject-ghost-distinfo ++ cut -f1 '-d ' + lines=1 + '[' 1 -ne 1 ']' + RPM_PERCENTAGES_COUNT=2 + /usr/bin/python3 /usr/lib/rpm/redhat/pyproject_save_files.py --output-files /builddir/build/BUILD/python-bioframe-0.6.4-1.fc41.x86_64-pyproject-files --output-modules /builddir/build/BUILD/python-bioframe-0.6.4-1.fc41.x86_64-pyproject-modules --buildroot /builddir/build/BUILDROOT/python-bioframe-0.6.4-1.fc41.x86_64 --sitelib /usr/lib/python3.12/site-packages --sitearch /usr/lib64/python3.12/site-packages --python-version 3.12 --pyproject-record /builddir/build/BUILD/python-bioframe-0.6.4-1.fc41.x86_64-pyproject-record --prefix /usr -l bioframe + /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 0.6.4-1.fc41 --unique-debug-suffix -0.6.4-1.fc41.x86_64 --unique-debug-src-base python-bioframe-0.6.4-1.fc41.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/bioframe-0.6.4 find-debuginfo: starting Extracting debug info from 0 files Creating .debug symlinks for symlinks to ELF files find: ‘debug’: No such file or directory find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2 Bytecompiling .py files below /builddir/build/BUILDROOT/python-bioframe-0.6.4-1.fc41.x86_64/usr/lib/python3.12 using python3.12 + /usr/lib/rpm/redhat/brp-python-hardlink Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.hgFH3c + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd bioframe-0.6.4 + '[' '!' -f /builddir/build/BUILD/python-bioframe-0.6.4-1.fc41.x86_64-pyproject-modules ']' + PATH=/builddir/build/BUILDROOT/python-bioframe-0.6.4-1.fc41.x86_64/usr/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin + PYTHONPATH=/builddir/build/BUILDROOT/python-bioframe-0.6.4-1.fc41.x86_64/usr/lib64/python3.12/site-packages:/builddir/build/BUILDROOT/python-bioframe-0.6.4-1.fc41.x86_64/usr/lib/python3.12/site-packages + _PYTHONSITE=/builddir/build/BUILDROOT/python-bioframe-0.6.4-1.fc41.x86_64/usr/lib64/python3.12/site-packages:/builddir/build/BUILDROOT/python-bioframe-0.6.4-1.fc41.x86_64/usr/lib/python3.12/site-packages + PYTHONDONTWRITEBYTECODE=1 + /usr/bin/python3 -sP /usr/lib/rpm/redhat/import_all_modules.py -f /builddir/build/BUILD/python-bioframe-0.6.4-1.fc41.x86_64-pyproject-modules Check import: bioframe Check import: bioframe.core Check import: bioframe.core.arrops Check import: bioframe.core.checks Check import: bioframe.core.construction Check import: bioframe.core.specs Check import: bioframe.core.stringops Check import: bioframe.extras Check import: bioframe.io Check import: bioframe.io.assembly Check import: bioframe.io.fileops Check import: bioframe.io.resources Check import: bioframe.io.schemas Check import: bioframe.ops Check import: bioframe.sandbox Check import: bioframe.sandbox.clients Check import: bioframe.sandbox.gtf_io Check import: bioframe.sandbox.parquet_io Check import: bioframe.vis + k='not test_fetch' + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + PATH=/builddir/build/BUILDROOT/python-bioframe-0.6.4-1.fc41.x86_64/usr/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin + PYTHONPATH=/builddir/build/BUILDROOT/python-bioframe-0.6.4-1.fc41.x86_64/usr/lib64/python3.12/site-packages:/builddir/build/BUILDROOT/python-bioframe-0.6.4-1.fc41.x86_64/usr/lib/python3.12/site-packages + PYTHONDONTWRITEBYTECODE=1 + PYTEST_ADDOPTS=' --ignore=/builddir/build/BUILD/bioframe-0.6.4/.pyproject-builddir' + PYTEST_XDIST_AUTO_NUM_WORKERS=2 + /usr/bin/pytest -v -k 'not test_fetch' ============================= test session starts ============================== platform linux -- Python 3.12.2, pytest-8.1.1, pluggy-1.4.0 -- /usr/bin/python3 cachedir: .pytest_cache rootdir: /builddir/build/BUILD/bioframe-0.6.4 configfile: pyproject.toml collecting ... collected 59 items / 3 deselected / 56 selected tests/test_assembly_info.py::test_assemblies_available PASSED [ 1%] tests/test_assembly_info.py::test_assembly_info PASSED [ 3%] tests/test_core_checks.py::test_is_cataloged PASSED [ 5%] tests/test_core_checks.py::test_is_contained PASSED [ 7%] tests/test_core_checks.py::test_is_overlapping PASSED [ 8%] tests/test_core_checks.py::test_is_covering PASSED [ 10%] tests/test_core_checks.py::test_is_tiling PASSED [ 12%] tests/test_core_checks.py::test_is_bedframe PASSED [ 14%] tests/test_core_checks.py::test_is_viewframe PASSED [ 16%] tests/test_core_checks.py::test_is_sorted PASSED [ 17%] tests/test_core_construction.py::test_add_ucsc_name_column PASSED [ 19%] tests/test_core_construction.py::test_any PASSED [ 21%] tests/test_core_construction.py::test_sanitize_bedframe PASSED [ 23%] tests/test_core_construction.py::test_make_viewframe PASSED [ 25%] tests/test_core_specs.py::test_get_default_colnames PASSED [ 26%] tests/test_core_specs.py::test_update_default_colnames PASSED [ 28%] tests/test_core_specs.py::test_verify_columns PASSED [ 30%] tests/test_core_specs.py::test_verify_column_dtypes PASSED [ 32%] tests/test_core_specs.py::test_is_chrom_dtype PASSED [ 33%] tests/test_core_stringops.py::test_to_ucsc_string PASSED [ 35%] tests/test_core_stringops.py::test_parse_region PASSED [ 37%] tests/test_core_stringops.py::test_parse_region_string PASSED [ 39%] tests/test_core_stringops.py::test_is_complete_ucsc_string PASSED [ 41%] tests/test_extras.py::test_make_chromarms PASSED [ 42%] tests/test_extras.py::test_binnify PASSED [ 44%] tests/test_extras.py::test_digest SKIPPED (could not import 'Bio': N...) [ 46%] tests/test_extras.py::test_frac_mapped SKIPPED (could not import 'py...) [ 48%] tests/test_extras.py::test_frac_gc SKIPPED (could not import 'pysam'...) [ 50%] tests/test_extras.py::test_seq_gc PASSED [ 51%] tests/test_extras.py::test_pair_by_distance PASSED [ 53%] tests/test_fileops.py::test_read_table PASSED [ 55%] tests/test_fileops.py::test_read_chromsizes PASSED [ 57%] tests/test_ops.py::test_trim PASSED [ 58%] tests/test_ops.py::test_expand PASSED [ 60%] tests/test_ops.py::test_expand_amount_args PASSED [ 62%] tests/test_ops.py::test_overlap PASSED [ 64%] tests/test_ops.py::test_overlap_preserves_coord_dtypes PASSED [ 66%] tests/test_ops.py::test_overlap_ensure_int PASSED [ 67%] tests/test_ops.py::test_cluster PASSED [ 69%] tests/test_ops.py::test_merge PASSED [ 71%] tests/test_ops.py::test_complement PASSED [ 73%] tests/test_ops.py::test_closest PASSED [ 75%] tests/test_ops.py::test_coverage PASSED [ 76%] tests/test_ops.py::test_subtract PASSED [ 78%] tests/test_ops.py::test_setdiff PASSED [ 80%] tests/test_ops.py::test_count_overlaps PASSED [ 82%] tests/test_ops.py::test_assign_view PASSED [ 83%] tests/test_ops.py::test_sort_bedframe PASSED [ 85%] tests/test_ops_select.py::test_select PASSED [ 87%] tests/test_ops_select.py::test_select__with_colnames PASSED [ 89%] tests/test_ops_select.py::test_select__with_nulls PASSED [ 91%] tests/test_ops_select.py::test_select__mask_indices_labels PASSED [ 92%] tests/test_ops_select.py::test_select__query_intervals_are_half_open PASSED [ 94%] tests/test_ops_select.py::test_select__with_point_intervals PASSED [ 96%] tests/test_ops_select.py::test_select__with_points PASSED [ 98%] tests/test_vis.py::test_to_ucsc_colorstring PASSED [100%] ================= 53 passed, 3 skipped, 3 deselected in 3.00s ================== + RPM_EC=0 ++ jobs -p + exit 0 Processing files: python3-bioframe-0.6.4-1.fc41.noarch Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.1RFySX + umask 022 + cd /builddir/build/BUILD + cd bioframe-0.6.4 + DOCDIR=/builddir/build/BUILDROOT/python-bioframe-0.6.4-1.fc41.x86_64/usr/share/doc/python3-bioframe + export LC_ALL= + LC_ALL= + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/python-bioframe-0.6.4-1.fc41.x86_64/usr/share/doc/python3-bioframe + cp -pr /builddir/build/BUILD/bioframe-0.6.4/README.md /builddir/build/BUILDROOT/python-bioframe-0.6.4-1.fc41.x86_64/usr/share/doc/python3-bioframe + cp -pr /builddir/build/BUILD/bioframe-0.6.4/CONTRIBUTING.md /builddir/build/BUILDROOT/python-bioframe-0.6.4-1.fc41.x86_64/usr/share/doc/python3-bioframe + cp -pr /builddir/build/BUILD/bioframe-0.6.4/CITATION.cff /builddir/build/BUILDROOT/python-bioframe-0.6.4-1.fc41.x86_64/usr/share/doc/python3-bioframe + cp -pr /builddir/build/BUILD/bioframe-0.6.4/CHANGES.md /builddir/build/BUILDROOT/python-bioframe-0.6.4-1.fc41.x86_64/usr/share/doc/python3-bioframe + RPM_EC=0 ++ jobs -p + exit 0 Provides: python-bioframe = 0.6.4-1.fc41 python3-bioframe = 0.6.4-1.fc41 python3.12-bioframe = 0.6.4-1.fc41 python3.12dist(bioframe) = 0.6.4 python3dist(bioframe) = 0.6.4 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: python(abi) = 3.12 python3.12dist(matplotlib) python3.12dist(numpy) >= 1.10 python3.12dist(pandas) >= 1.3 python3.12dist(pyyaml) python3.12dist(requests) Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/python-bioframe-0.6.4-1.fc41.x86_64 Wrote: /builddir/build/SRPMS/python-bioframe-0.6.4-1.fc41.src.rpm Wrote: /builddir/build/RPMS/python3-bioframe-0.6.4-1.fc41.noarch.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.1V92E9 + umask 022 + cd /builddir/build/BUILD + cd bioframe-0.6.4 + /usr/bin/rm -rf /builddir/build/BUILDROOT/python-bioframe-0.6.4-1.fc41.x86_64 + RPM_EC=0 ++ jobs -p + exit 0 Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.179VH8 + umask 022 + cd /builddir/build/BUILD + rm -rf /builddir/build/BUILD/bioframe-0.6.4-SPECPARTS + rm -rf bioframe-0.6.4 bioframe-0.6.4.gemspec + RPM_EC=0 ++ jobs -p + exit 0 Finish: rpmbuild python-bioframe-0.6.4-1.fc41.src.rpm Finish: build phase for python-bioframe-0.6.4-1.fc41.src.rpm INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-x86_64-1712489650.790762/root/var/log/dnf5.log INFO: Done(/var/lib/copr-rpmbuild/results/python-bioframe-0.6.4-1.fc41.src.rpm) Config(child) 0 minutes 26 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "python3-bioframe", "epoch": null, "version": "0.6.4", "release": "1.fc41", "arch": "noarch" }, { "name": "python-bioframe", "epoch": null, "version": "0.6.4", "release": "1.fc41", "arch": "src" } ] } RPMResults finished