Mock Version: 3.5 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/python-netpyne.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1680681278.352563/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.n4o2pqmh:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.n4o2pqmh:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '80206e74598b47aaaca9a2d85763510d', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1680681278.352563/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.n4o2pqmh:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/python-netpyne.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1674172800 Wrote: /builddir/build/SRPMS/python-netpyne-1.0.3.1-2.fc39.src.rpm Child return code was: 0 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -br --target x86_64 --nodeps /builddir/build/SPECS/python-netpyne.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1680681278.352563/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.n4o2pqmh:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueraiseExc=FalseprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.n4o2pqmh:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '8f863c5fc6864b3ba22d829e82573fbc', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1680681278.352563/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.n4o2pqmh:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -br --target x86_64 --nodeps /builddir/build/SPECS/python-netpyne.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1674172800 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.kDAZL4 + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf netpyne-1.0.3.1 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/python-netpyne-1.0.3.1.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd netpyne-1.0.3.1 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + sed -i 's/matplotlib<=3.5.1/matplotlib/' setup.py + find . -type f -name '*.py' -exec sed -i '/^#![ ]*\/usr\/bin\/env.*$/ d' '{}' ';' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.ZQl8nG + umask 022 + cd /builddir/build/BUILD + cd netpyne-1.0.3.1 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + '[' -f setup.py ']' + echo 'python3dist(setuptools) >= 40.8' + echo 'python3dist(wheel)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/netpyne-1.0.3.1/.pyproject-builddir + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + TMPDIR=/builddir/build/BUILD/netpyne-1.0.3.1/.pyproject-builddir + RPM_TOXENV=py311 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/netpyne-1.0.3.1/pyproject-wheeldir Handling setuptools >= 40.8 from default build backend Requirement satisfied: setuptools >= 40.8 (installed: setuptools 65.5.1) Handling wheel from default build backend Requirement not satisfied: wheel Exiting dependency generation pass: build backend + rm -rfv '*.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-netpyne-1.0.3.1-2.fc39.buildreqs.nosrc.rpm Child return code was: 11 Dynamic buildrequires detected Going to install missing buildrequires. See root.log for details. ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -br --target x86_64 --nodeps /builddir/build/SPECS/python-netpyne.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1680681278.352563/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.n4o2pqmh:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueraiseExc=FalseprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.n4o2pqmh:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '19e787c37b4449649286576b47854001', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1680681278.352563/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.n4o2pqmh:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -br --target x86_64 --nodeps /builddir/build/SPECS/python-netpyne.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1674172800 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.OrU80e + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf netpyne-1.0.3.1 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/python-netpyne-1.0.3.1.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd netpyne-1.0.3.1 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + sed -i 's/matplotlib<=3.5.1/matplotlib/' setup.py + find . -type f -name '*.py' -exec sed -i '/^#![ ]*\/usr\/bin\/env.*$/ d' '{}' ';' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.VmlsEV + umask 022 + cd /builddir/build/BUILD + cd netpyne-1.0.3.1 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + '[' -f setup.py ']' + echo 'python3dist(setuptools) >= 40.8' + echo 'python3dist(wheel)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/netpyne-1.0.3.1/.pyproject-builddir + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + TMPDIR=/builddir/build/BUILD/netpyne-1.0.3.1/.pyproject-builddir + RPM_TOXENV=py311 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/netpyne-1.0.3.1/pyproject-wheeldir Handling setuptools >= 40.8 from default build backend Requirement satisfied: setuptools >= 40.8 (installed: setuptools 65.5.1) Handling wheel from default build backend Requirement satisfied: wheel (installed: wheel 0.40.0) warning: manifest_maker: MANIFEST.in, line 2: 'recursive-exclude' expects ... warning: no previously-included files matching '*' found under directory 'examples' warning: no previously-included files matching 'x86_64' found anywhere in distribution warning: no previously-included files matching 'x86_64/*' found anywhere in distribution warning: no previously-included files matching '.libs*' found anywhere in distribution warning: no previously-included files matching '.libs/*' found anywhere in distribution warning: no previously-included files matching '*.pyc' found anywhere in distribution HOOK STDOUT: running egg_info HOOK STDOUT: creating netpyne.egg-info HOOK STDOUT: writing netpyne.egg-info/PKG-INFO HOOK STDOUT: writing dependency_links to netpyne.egg-info/dependency_links.txt HOOK STDOUT: writing requirements to netpyne.egg-info/requires.txt HOOK STDOUT: writing top-level names to netpyne.egg-info/top_level.txt HOOK STDOUT: writing manifest file 'netpyne.egg-info/SOURCES.txt' HOOK STDOUT: reading manifest file 'netpyne.egg-info/SOURCES.txt' HOOK STDOUT: reading manifest template 'MANIFEST.in' HOOK STDOUT: adding license file 'LICENSE' HOOK STDOUT: writing manifest file 'netpyne.egg-info/SOURCES.txt' Handling wheel from get_requires_for_build_wheel Requirement satisfied: wheel (installed: wheel 0.40.0) warning: manifest_maker: MANIFEST.in, line 2: 'recursive-exclude' expects ... warning: no previously-included files matching '*' found under directory 'examples' warning: no previously-included files matching 'x86_64' found anywhere in distribution warning: no previously-included files matching 'x86_64/*' found anywhere in distribution warning: no previously-included files matching '.libs*' found anywhere in distribution warning: no previously-included files matching '.libs/*' found anywhere in distribution warning: no previously-included files matching '*.pyc' found anywhere in distribution HOOK STDOUT: running dist_info HOOK STDOUT: writing netpyne.egg-info/PKG-INFO HOOK STDOUT: writing dependency_links to netpyne.egg-info/dependency_links.txt HOOK STDOUT: writing requirements to netpyne.egg-info/requires.txt HOOK STDOUT: writing top-level names to netpyne.egg-info/top_level.txt HOOK STDOUT: reading manifest file 'netpyne.egg-info/SOURCES.txt' HOOK STDOUT: reading manifest template 'MANIFEST.in' HOOK STDOUT: adding license file 'LICENSE' HOOK STDOUT: writing manifest file 'netpyne.egg-info/SOURCES.txt' HOOK STDOUT: creating '/builddir/build/BUILD/netpyne-1.0.3.1/netpyne-1.0.3.1.dist-info' Handling numpy from hook generated metadata: Requires-Dist Requirement not satisfied: numpy Handling scipy from hook generated metadata: Requires-Dist Requirement not satisfied: scipy Handling matplotlib from hook generated metadata: Requires-Dist Requirement not satisfied: matplotlib Handling matplotlib-scalebar from hook generated metadata: Requires-Dist Requirement not satisfied: matplotlib-scalebar Handling future from hook generated metadata: Requires-Dist Requirement not satisfied: future Handling pandas from hook generated metadata: Requires-Dist Requirement not satisfied: pandas Handling bokeh from hook generated metadata: Requires-Dist Requirement not satisfied: bokeh Handling schema from hook generated metadata: Requires-Dist Requirement not satisfied: schema Handling lfpykit from hook generated metadata: Requires-Dist Requirement not satisfied: lfpykit + rm -rfv netpyne-1.0.3.1.dist-info/ removed 'netpyne-1.0.3.1.dist-info/LICENSE' removed 'netpyne-1.0.3.1.dist-info/METADATA' removed 'netpyne-1.0.3.1.dist-info/top_level.txt' removed directory 'netpyne-1.0.3.1.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-netpyne-1.0.3.1-2.fc39.buildreqs.nosrc.rpm Child return code was: 11 Dynamic buildrequires detected Going to install missing buildrequires. See root.log for details. ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -br --target x86_64 --nodeps /builddir/build/SPECS/python-netpyne.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1680681278.352563/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.n4o2pqmh:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueraiseExc=FalseprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.n4o2pqmh:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'b5335baf67094bbdb149e8d3dab3481b', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1680681278.352563/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.n4o2pqmh:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -br --target x86_64 --nodeps /builddir/build/SPECS/python-netpyne.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1674172800 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.RV97vp + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf netpyne-1.0.3.1 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/python-netpyne-1.0.3.1.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd netpyne-1.0.3.1 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + sed -i 's/matplotlib<=3.5.1/matplotlib/' setup.py + find . -type f -name '*.py' -exec sed -i '/^#![ ]*\/usr\/bin\/env.*$/ d' '{}' ';' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.ghbkSo + umask 022 + cd /builddir/build/BUILD + cd netpyne-1.0.3.1 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + '[' -f setup.py ']' + echo 'python3dist(setuptools) >= 40.8' + echo 'python3dist(wheel)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/netpyne-1.0.3.1/.pyproject-builddir + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + TMPDIR=/builddir/build/BUILD/netpyne-1.0.3.1/.pyproject-builddir + RPM_TOXENV=py311 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/netpyne-1.0.3.1/pyproject-wheeldir Handling setuptools >= 40.8 from default build backend Requirement satisfied: setuptools >= 40.8 (installed: setuptools 65.5.1) Handling wheel from default build backend Requirement satisfied: wheel (installed: wheel 0.40.0) warning: manifest_maker: MANIFEST.in, line 2: 'recursive-exclude' expects ... warning: no previously-included files matching '*' found under directory 'examples' warning: no previously-included files matching 'x86_64' found anywhere in distribution warning: no previously-included files matching 'x86_64/*' found anywhere in distribution warning: no previously-included files matching '.libs*' found anywhere in distribution warning: no previously-included files matching '.libs/*' found anywhere in distribution warning: no previously-included files matching '*.pyc' found anywhere in distribution HOOK STDOUT: running egg_info HOOK STDOUT: creating netpyne.egg-info HOOK STDOUT: writing netpyne.egg-info/PKG-INFO HOOK STDOUT: writing dependency_links to netpyne.egg-info/dependency_links.txt HOOK STDOUT: writing requirements to netpyne.egg-info/requires.txt HOOK STDOUT: writing top-level names to netpyne.egg-info/top_level.txt HOOK STDOUT: writing manifest file 'netpyne.egg-info/SOURCES.txt' HOOK STDOUT: reading manifest file 'netpyne.egg-info/SOURCES.txt' HOOK STDOUT: reading manifest template 'MANIFEST.in' HOOK STDOUT: adding license file 'LICENSE' HOOK STDOUT: writing manifest file 'netpyne.egg-info/SOURCES.txt' Handling wheel from get_requires_for_build_wheel Requirement satisfied: wheel (installed: wheel 0.40.0) warning: manifest_maker: MANIFEST.in, line 2: 'recursive-exclude' expects ... warning: no previously-included files matching '*' found under directory 'examples' warning: no previously-included files matching 'x86_64' found anywhere in distribution warning: no previously-included files matching 'x86_64/*' found anywhere in distribution warning: no previously-included files matching '.libs*' found anywhere in distribution warning: no previously-included files matching '.libs/*' found anywhere in distribution warning: no previously-included files matching '*.pyc' found anywhere in distribution HOOK STDOUT: running dist_info HOOK STDOUT: writing netpyne.egg-info/PKG-INFO HOOK STDOUT: writing dependency_links to netpyne.egg-info/dependency_links.txt HOOK STDOUT: writing requirements to netpyne.egg-info/requires.txt HOOK STDOUT: writing top-level names to netpyne.egg-info/top_level.txt HOOK STDOUT: reading manifest file 'netpyne.egg-info/SOURCES.txt' HOOK STDOUT: reading manifest template 'MANIFEST.in' HOOK STDOUT: adding license file 'LICENSE' HOOK STDOUT: writing manifest file 'netpyne.egg-info/SOURCES.txt' HOOK STDOUT: creating '/builddir/build/BUILD/netpyne-1.0.3.1/netpyne-1.0.3.1.dist-info' Handling numpy from hook generated metadata: Requires-Dist Requirement satisfied: numpy (installed: numpy 1.24.1) Handling scipy from hook generated metadata: Requires-Dist Requirement satisfied: scipy (installed: scipy 1.10.1) Handling matplotlib from hook generated metadata: Requires-Dist Requirement satisfied: matplotlib (installed: matplotlib 3.7.1) Handling matplotlib-scalebar from hook generated metadata: Requires-Dist Requirement satisfied: matplotlib-scalebar (installed: matplotlib-scalebar 0.8.1) Handling future from hook generated metadata: Requires-Dist Requirement satisfied: future (installed: future 0.18.3) Handling pandas from hook generated metadata: Requires-Dist Requirement satisfied: pandas (installed: pandas 1.5.3) Handling bokeh from hook generated metadata: Requires-Dist Requirement satisfied: bokeh (installed: bokeh 2.3.0) Handling schema from hook generated metadata: Requires-Dist Requirement satisfied: schema (installed: schema 0.7.5) Handling lfpykit from hook generated metadata: Requires-Dist Requirement satisfied: lfpykit (installed: lfpykit 0.5) + rm -rfv netpyne-1.0.3.1.dist-info/ removed 'netpyne-1.0.3.1.dist-info/LICENSE' removed 'netpyne-1.0.3.1.dist-info/METADATA' removed 'netpyne-1.0.3.1.dist-info/top_level.txt' removed directory 'netpyne-1.0.3.1.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-netpyne-1.0.3.1-2.fc39.buildreqs.nosrc.rpm Child return code was: 11 Dynamic buildrequires detected Going to install missing buildrequires. See root.log for details. ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -ba --noprep --target x86_64 --nodeps /builddir/build/SPECS/python-netpyne.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1680681278.352563/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.n4o2pqmh:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.n4o2pqmh:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'f1504c9d6ff843ec948e0a7ef0ed7485', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1680681278.352563/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.n4o2pqmh:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -ba --noprep --target x86_64 --nodeps /builddir/build/SPECS/python-netpyne.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1674172800 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.HwnZSz + umask 022 + cd /builddir/build/BUILD + cd netpyne-1.0.3.1 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + '[' -f setup.py ']' + echo 'python3dist(setuptools) >= 40.8' + echo 'python3dist(wheel)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/netpyne-1.0.3.1/.pyproject-builddir + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + TMPDIR=/builddir/build/BUILD/netpyne-1.0.3.1/.pyproject-builddir + RPM_TOXENV=py311 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/netpyne-1.0.3.1/pyproject-wheeldir Handling setuptools >= 40.8 from default build backend Requirement satisfied: setuptools >= 40.8 (installed: setuptools 65.5.1) Handling wheel from default build backend Requirement satisfied: wheel (installed: wheel 0.40.0) warning: manifest_maker: MANIFEST.in, line 2: 'recursive-exclude' expects ... warning: no previously-included files matching '*' found under directory 'examples' warning: no previously-included files matching 'x86_64' found anywhere in distribution warning: no previously-included files matching 'x86_64/*' found anywhere in distribution warning: no previously-included files matching '.libs*' found anywhere in distribution warning: no previously-included files matching '.libs/*' found anywhere in distribution warning: no previously-included files matching '*.pyc' found anywhere in distribution HOOK STDOUT: running egg_info HOOK STDOUT: writing netpyne.egg-info/PKG-INFO HOOK STDOUT: writing dependency_links to netpyne.egg-info/dependency_links.txt HOOK STDOUT: writing requirements to netpyne.egg-info/requires.txt HOOK STDOUT: writing top-level names to netpyne.egg-info/top_level.txt HOOK STDOUT: reading manifest file 'netpyne.egg-info/SOURCES.txt' HOOK STDOUT: reading manifest template 'MANIFEST.in' HOOK STDOUT: adding license file 'LICENSE' HOOK STDOUT: writing manifest file 'netpyne.egg-info/SOURCES.txt' Handling wheel from get_requires_for_build_wheel Requirement satisfied: wheel (installed: wheel 0.40.0) warning: manifest_maker: MANIFEST.in, line 2: 'recursive-exclude' expects ... warning: no previously-included files matching '*' found under directory 'examples' warning: no previously-included files matching 'x86_64' found anywhere in distribution warning: no previously-included files matching 'x86_64/*' found anywhere in distribution warning: no previously-included files matching '.libs*' found anywhere in distribution warning: no previously-included files matching '.libs/*' found anywhere in distribution warning: no previously-included files matching '*.pyc' found anywhere in distribution HOOK STDOUT: running dist_info HOOK STDOUT: writing netpyne.egg-info/PKG-INFO HOOK STDOUT: writing dependency_links to netpyne.egg-info/dependency_links.txt HOOK STDOUT: writing requirements to netpyne.egg-info/requires.txt HOOK STDOUT: writing top-level names to netpyne.egg-info/top_level.txt HOOK STDOUT: reading manifest file 'netpyne.egg-info/SOURCES.txt' HOOK STDOUT: reading manifest template 'MANIFEST.in' HOOK STDOUT: adding license file 'LICENSE' HOOK STDOUT: writing manifest file 'netpyne.egg-info/SOURCES.txt' HOOK STDOUT: creating '/builddir/build/BUILD/netpyne-1.0.3.1/netpyne-1.0.3.1.dist-info' Handling numpy from hook generated metadata: Requires-Dist Requirement satisfied: numpy (installed: numpy 1.24.1) Handling scipy from hook generated metadata: Requires-Dist Requirement satisfied: scipy (installed: scipy 1.10.1) Handling matplotlib from hook generated metadata: Requires-Dist Requirement satisfied: matplotlib (installed: matplotlib 3.7.1) Handling matplotlib-scalebar from hook generated metadata: Requires-Dist Requirement satisfied: matplotlib-scalebar (installed: matplotlib-scalebar 0.8.1) Handling future from hook generated metadata: Requires-Dist Requirement satisfied: future (installed: future 0.18.3) Handling pandas from hook generated metadata: Requires-Dist Requirement satisfied: pandas (installed: pandas 1.5.3) Handling bokeh from hook generated metadata: Requires-Dist Requirement satisfied: bokeh (installed: bokeh 2.3.0) Handling schema from hook generated metadata: Requires-Dist Requirement satisfied: schema (installed: schema 0.7.5) Handling lfpykit from hook generated metadata: Requires-Dist Requirement satisfied: lfpykit (installed: lfpykit 0.5) + rm -rfv netpyne-1.0.3.1.dist-info/ removed 'netpyne-1.0.3.1.dist-info/LICENSE' removed 'netpyne-1.0.3.1.dist-info/METADATA' removed 'netpyne-1.0.3.1.dist-info/top_level.txt' removed directory 'netpyne-1.0.3.1.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.9F9Bnu + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd netpyne-1.0.3.1 + mkdir -p /builddir/build/BUILD/netpyne-1.0.3.1/.pyproject-builddir + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + TMPDIR=/builddir/build/BUILD/netpyne-1.0.3.1/.pyproject-builddir + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_wheel.py /builddir/build/BUILD/netpyne-1.0.3.1/pyproject-wheeldir Processing /builddir/build/BUILD/netpyne-1.0.3.1 Preparing metadata (pyproject.toml): started Running command Preparing metadata (pyproject.toml) running dist_info creating /builddir/build/BUILD/netpyne-1.0.3.1/.pyproject-builddir/pip-modern-metadata-3eirtdwk/netpyne.egg-info writing /builddir/build/BUILD/netpyne-1.0.3.1/.pyproject-builddir/pip-modern-metadata-3eirtdwk/netpyne.egg-info/PKG-INFO writing dependency_links to /builddir/build/BUILD/netpyne-1.0.3.1/.pyproject-builddir/pip-modern-metadata-3eirtdwk/netpyne.egg-info/dependency_links.txt writing requirements to /builddir/build/BUILD/netpyne-1.0.3.1/.pyproject-builddir/pip-modern-metadata-3eirtdwk/netpyne.egg-info/requires.txt writing top-level names to /builddir/build/BUILD/netpyne-1.0.3.1/.pyproject-builddir/pip-modern-metadata-3eirtdwk/netpyne.egg-info/top_level.txt writing manifest file '/builddir/build/BUILD/netpyne-1.0.3.1/.pyproject-builddir/pip-modern-metadata-3eirtdwk/netpyne.egg-info/SOURCES.txt' reading manifest file '/builddir/build/BUILD/netpyne-1.0.3.1/.pyproject-builddir/pip-modern-metadata-3eirtdwk/netpyne.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: manifest_maker: MANIFEST.in, line 2: 'recursive-exclude' expects ... warning: no previously-included files matching '*' found under directory 'examples' warning: no previously-included files matching 'x86_64' found anywhere in distribution warning: no previously-included files matching 'x86_64/*' found anywhere in distribution warning: no previously-included files matching '.libs*' found anywhere in distribution warning: no previously-included files matching '.libs/*' found anywhere in distribution warning: no previously-included files matching '*.pyc' found anywhere in distribution adding license file 'LICENSE' writing manifest file '/builddir/build/BUILD/netpyne-1.0.3.1/.pyproject-builddir/pip-modern-metadata-3eirtdwk/netpyne.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/netpyne-1.0.3.1/.pyproject-builddir/pip-modern-metadata-3eirtdwk/netpyne-1.0.3.1.dist-info' Preparing metadata (pyproject.toml): finished with status 'done' Building wheels for collected packages: netpyne Building wheel for netpyne (pyproject.toml): started Running command Building wheel for netpyne (pyproject.toml) running bdist_wheel running build running build_py creating build creating build/lib creating build/lib/netpyne copying netpyne/__init__.py -> build/lib/netpyne creating build/lib/netpyne/tests copying netpyne/tests/__init__.py -> build/lib/netpyne/tests copying netpyne/tests/checks.py -> build/lib/netpyne/tests copying netpyne/tests/tests.py -> build/lib/netpyne/tests copying netpyne/tests/validate_tests.py -> build/lib/netpyne/tests creating build/lib/netpyne/support copying netpyne/support/__init__.py -> build/lib/netpyne/support copying netpyne/support/bsmart.py -> build/lib/netpyne/support copying netpyne/support/csd.py -> build/lib/netpyne/support copying netpyne/support/filter.py -> build/lib/netpyne/support copying netpyne/support/morlet.py -> build/lib/netpyne/support copying netpyne/support/morphology.py -> build/lib/netpyne/support copying netpyne/support/nml_reader.py -> build/lib/netpyne/support copying netpyne/support/recxelectrode.py -> build/lib/netpyne/support copying netpyne/support/scalebar.py -> build/lib/netpyne/support copying netpyne/support/stackedBarGraph.py -> build/lib/netpyne/support creating build/lib/netpyne/specs copying netpyne/specs/__init__.py -> build/lib/netpyne/specs copying netpyne/specs/dicts.py -> build/lib/netpyne/specs copying netpyne/specs/netParams.py -> build/lib/netpyne/specs copying netpyne/specs/simConfig.py -> build/lib/netpyne/specs copying netpyne/specs/utils.py -> build/lib/netpyne/specs creating build/lib/netpyne/sim copying netpyne/sim/__init__.py -> build/lib/netpyne/sim copying netpyne/sim/gather.py -> build/lib/netpyne/sim copying netpyne/sim/load.py -> build/lib/netpyne/sim copying netpyne/sim/run.py -> build/lib/netpyne/sim copying netpyne/sim/save.py -> build/lib/netpyne/sim copying netpyne/sim/setup.py -> build/lib/netpyne/sim copying netpyne/sim/utils.py -> build/lib/netpyne/sim copying netpyne/sim/validate.py -> build/lib/netpyne/sim copying netpyne/sim/validator.py -> build/lib/netpyne/sim copying netpyne/sim/wrappers.py -> build/lib/netpyne/sim creating build/lib/netpyne/plotting copying netpyne/plotting/__init__.py -> build/lib/netpyne/plotting copying netpyne/plotting/plotCSD.py -> build/lib/netpyne/plotting copying netpyne/plotting/plotLFPLocations.py -> build/lib/netpyne/plotting copying netpyne/plotting/plotLFPPSD.py -> build/lib/netpyne/plotting copying netpyne/plotting/plotLFPSpectrogram.py -> build/lib/netpyne/plotting copying netpyne/plotting/plotLFPTimeSeries.py -> build/lib/netpyne/plotting copying netpyne/plotting/plotRaster.py -> build/lib/netpyne/plotting copying netpyne/plotting/plotShape.py -> build/lib/netpyne/plotting copying netpyne/plotting/plotSpikeFreq.py -> build/lib/netpyne/plotting copying netpyne/plotting/plotSpikeHist.py -> build/lib/netpyne/plotting copying netpyne/plotting/plotter.py -> build/lib/netpyne/plotting creating build/lib/netpyne/network copying netpyne/network/__init__.py -> build/lib/netpyne/network copying netpyne/network/conn.py -> build/lib/netpyne/network copying netpyne/network/modify.py -> build/lib/netpyne/network copying netpyne/network/netrxd.py -> build/lib/netpyne/network copying netpyne/network/network.py -> build/lib/netpyne/network copying netpyne/network/pop.py -> build/lib/netpyne/network copying netpyne/network/shape.py -> build/lib/netpyne/network copying netpyne/network/stim.py -> build/lib/netpyne/network copying netpyne/network/subconn.py -> build/lib/netpyne/network creating build/lib/netpyne/metadata copying netpyne/metadata/__init__.py -> build/lib/netpyne/metadata copying netpyne/metadata/api.py -> build/lib/netpyne/metadata copying netpyne/metadata/metadata.py -> build/lib/netpyne/metadata creating build/lib/netpyne/conversion copying netpyne/conversion/__init__.py -> build/lib/netpyne/conversion copying netpyne/conversion/excel.py -> build/lib/netpyne/conversion copying netpyne/conversion/neuromlFormat.py -> build/lib/netpyne/conversion copying netpyne/conversion/neuronPyHoc.py -> build/lib/netpyne/conversion copying netpyne/conversion/pythonScript.py -> build/lib/netpyne/conversion copying netpyne/conversion/sonataImport.py -> build/lib/netpyne/conversion creating build/lib/netpyne/cell copying netpyne/cell/NML2Cell.py -> build/lib/netpyne/cell copying netpyne/cell/NML2SpikeSource.py -> build/lib/netpyne/cell copying netpyne/cell/__init__.py -> build/lib/netpyne/cell copying netpyne/cell/cell.py -> build/lib/netpyne/cell copying netpyne/cell/compartCell.py -> build/lib/netpyne/cell copying netpyne/cell/inputs.py -> build/lib/netpyne/cell copying netpyne/cell/pointCell.py -> build/lib/netpyne/cell creating build/lib/netpyne/batch copying netpyne/batch/__init__.py -> build/lib/netpyne/batch copying netpyne/batch/asd_parallel.py -> build/lib/netpyne/batch copying netpyne/batch/batch.py -> build/lib/netpyne/batch copying netpyne/batch/evol.py -> build/lib/netpyne/batch copying netpyne/batch/grid.py -> build/lib/netpyne/batch copying netpyne/batch/optuna_parallel.py -> build/lib/netpyne/batch copying netpyne/batch/sbi_parallel.py -> build/lib/netpyne/batch copying netpyne/batch/utils.py -> build/lib/netpyne/batch creating build/lib/netpyne/analysis copying netpyne/analysis/__init__.py -> build/lib/netpyne/analysis copying netpyne/analysis/csd.py -> build/lib/netpyne/analysis copying netpyne/analysis/csd_legacy.py -> build/lib/netpyne/analysis copying netpyne/analysis/dipole.py -> build/lib/netpyne/analysis copying netpyne/analysis/filter.py -> build/lib/netpyne/analysis copying netpyne/analysis/info.py -> build/lib/netpyne/analysis copying netpyne/analysis/interactive.py -> build/lib/netpyne/analysis copying netpyne/analysis/lfp.py -> build/lib/netpyne/analysis copying netpyne/analysis/lfp_orig.py -> build/lib/netpyne/analysis copying netpyne/analysis/mapping.py -> build/lib/netpyne/analysis copying netpyne/analysis/network.py -> build/lib/netpyne/analysis copying netpyne/analysis/rxd.py -> build/lib/netpyne/analysis copying netpyne/analysis/spikes.py -> build/lib/netpyne/analysis copying netpyne/analysis/spikes_legacy.py -> build/lib/netpyne/analysis copying netpyne/analysis/tools.py -> build/lib/netpyne/analysis copying netpyne/analysis/traces.py -> build/lib/netpyne/analysis copying netpyne/analysis/utils.py -> build/lib/netpyne/analysis copying netpyne/analysis/wrapper.py -> build/lib/netpyne/analysis installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64 creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/netpyne creating build/bdist.linux-x86_64/wheel/netpyne/analysis copying build/lib/netpyne/analysis/wrapper.py -> build/bdist.linux-x86_64/wheel/netpyne/analysis copying build/lib/netpyne/analysis/utils.py -> build/bdist.linux-x86_64/wheel/netpyne/analysis copying build/lib/netpyne/analysis/traces.py -> build/bdist.linux-x86_64/wheel/netpyne/analysis copying build/lib/netpyne/analysis/tools.py -> build/bdist.linux-x86_64/wheel/netpyne/analysis copying build/lib/netpyne/analysis/spikes_legacy.py -> build/bdist.linux-x86_64/wheel/netpyne/analysis copying build/lib/netpyne/analysis/spikes.py -> build/bdist.linux-x86_64/wheel/netpyne/analysis copying build/lib/netpyne/analysis/rxd.py -> build/bdist.linux-x86_64/wheel/netpyne/analysis copying build/lib/netpyne/analysis/network.py -> build/bdist.linux-x86_64/wheel/netpyne/analysis copying build/lib/netpyne/analysis/mapping.py -> build/bdist.linux-x86_64/wheel/netpyne/analysis copying build/lib/netpyne/analysis/lfp_orig.py -> build/bdist.linux-x86_64/wheel/netpyne/analysis copying build/lib/netpyne/analysis/lfp.py -> build/bdist.linux-x86_64/wheel/netpyne/analysis copying build/lib/netpyne/analysis/interactive.py -> build/bdist.linux-x86_64/wheel/netpyne/analysis copying build/lib/netpyne/analysis/info.py -> build/bdist.linux-x86_64/wheel/netpyne/analysis copying build/lib/netpyne/analysis/filter.py -> build/bdist.linux-x86_64/wheel/netpyne/analysis copying build/lib/netpyne/analysis/dipole.py -> build/bdist.linux-x86_64/wheel/netpyne/analysis copying build/lib/netpyne/analysis/csd_legacy.py -> build/bdist.linux-x86_64/wheel/netpyne/analysis copying build/lib/netpyne/analysis/csd.py -> build/bdist.linux-x86_64/wheel/netpyne/analysis copying build/lib/netpyne/analysis/__init__.py -> build/bdist.linux-x86_64/wheel/netpyne/analysis creating build/bdist.linux-x86_64/wheel/netpyne/batch copying build/lib/netpyne/batch/utils.py -> build/bdist.linux-x86_64/wheel/netpyne/batch copying build/lib/netpyne/batch/sbi_parallel.py -> build/bdist.linux-x86_64/wheel/netpyne/batch copying build/lib/netpyne/batch/optuna_parallel.py -> build/bdist.linux-x86_64/wheel/netpyne/batch copying build/lib/netpyne/batch/grid.py -> build/bdist.linux-x86_64/wheel/netpyne/batch copying build/lib/netpyne/batch/evol.py -> build/bdist.linux-x86_64/wheel/netpyne/batch copying build/lib/netpyne/batch/batch.py -> build/bdist.linux-x86_64/wheel/netpyne/batch copying build/lib/netpyne/batch/asd_parallel.py -> build/bdist.linux-x86_64/wheel/netpyne/batch copying build/lib/netpyne/batch/__init__.py -> build/bdist.linux-x86_64/wheel/netpyne/batch creating build/bdist.linux-x86_64/wheel/netpyne/cell copying build/lib/netpyne/cell/pointCell.py -> build/bdist.linux-x86_64/wheel/netpyne/cell copying build/lib/netpyne/cell/inputs.py -> build/bdist.linux-x86_64/wheel/netpyne/cell copying build/lib/netpyne/cell/compartCell.py -> build/bdist.linux-x86_64/wheel/netpyne/cell copying build/lib/netpyne/cell/cell.py -> build/bdist.linux-x86_64/wheel/netpyne/cell copying build/lib/netpyne/cell/__init__.py -> build/bdist.linux-x86_64/wheel/netpyne/cell copying build/lib/netpyne/cell/NML2SpikeSource.py -> build/bdist.linux-x86_64/wheel/netpyne/cell copying build/lib/netpyne/cell/NML2Cell.py -> build/bdist.linux-x86_64/wheel/netpyne/cell creating build/bdist.linux-x86_64/wheel/netpyne/conversion copying build/lib/netpyne/conversion/sonataImport.py -> build/bdist.linux-x86_64/wheel/netpyne/conversion copying build/lib/netpyne/conversion/pythonScript.py -> build/bdist.linux-x86_64/wheel/netpyne/conversion copying build/lib/netpyne/conversion/neuronPyHoc.py -> build/bdist.linux-x86_64/wheel/netpyne/conversion copying build/lib/netpyne/conversion/neuromlFormat.py -> build/bdist.linux-x86_64/wheel/netpyne/conversion copying build/lib/netpyne/conversion/excel.py -> build/bdist.linux-x86_64/wheel/netpyne/conversion copying build/lib/netpyne/conversion/__init__.py -> build/bdist.linux-x86_64/wheel/netpyne/conversion creating build/bdist.linux-x86_64/wheel/netpyne/metadata copying build/lib/netpyne/metadata/metadata.py -> build/bdist.linux-x86_64/wheel/netpyne/metadata copying build/lib/netpyne/metadata/api.py -> build/bdist.linux-x86_64/wheel/netpyne/metadata copying build/lib/netpyne/metadata/__init__.py -> build/bdist.linux-x86_64/wheel/netpyne/metadata creating build/bdist.linux-x86_64/wheel/netpyne/network copying build/lib/netpyne/network/subconn.py -> build/bdist.linux-x86_64/wheel/netpyne/network copying build/lib/netpyne/network/stim.py -> build/bdist.linux-x86_64/wheel/netpyne/network copying build/lib/netpyne/network/shape.py -> build/bdist.linux-x86_64/wheel/netpyne/network copying build/lib/netpyne/network/pop.py -> build/bdist.linux-x86_64/wheel/netpyne/network copying build/lib/netpyne/network/network.py -> build/bdist.linux-x86_64/wheel/netpyne/network copying build/lib/netpyne/network/netrxd.py -> build/bdist.linux-x86_64/wheel/netpyne/network copying build/lib/netpyne/network/modify.py -> build/bdist.linux-x86_64/wheel/netpyne/network copying build/lib/netpyne/network/conn.py -> build/bdist.linux-x86_64/wheel/netpyne/network copying build/lib/netpyne/network/__init__.py -> build/bdist.linux-x86_64/wheel/netpyne/network creating build/bdist.linux-x86_64/wheel/netpyne/plotting copying build/lib/netpyne/plotting/plotter.py -> build/bdist.linux-x86_64/wheel/netpyne/plotting copying build/lib/netpyne/plotting/plotSpikeHist.py -> build/bdist.linux-x86_64/wheel/netpyne/plotting copying build/lib/netpyne/plotting/plotSpikeFreq.py -> build/bdist.linux-x86_64/wheel/netpyne/plotting copying build/lib/netpyne/plotting/plotShape.py -> build/bdist.linux-x86_64/wheel/netpyne/plotting copying build/lib/netpyne/plotting/plotRaster.py -> build/bdist.linux-x86_64/wheel/netpyne/plotting copying build/lib/netpyne/plotting/plotLFPTimeSeries.py -> build/bdist.linux-x86_64/wheel/netpyne/plotting copying build/lib/netpyne/plotting/plotLFPSpectrogram.py -> build/bdist.linux-x86_64/wheel/netpyne/plotting copying build/lib/netpyne/plotting/plotLFPPSD.py -> build/bdist.linux-x86_64/wheel/netpyne/plotting copying build/lib/netpyne/plotting/plotLFPLocations.py -> build/bdist.linux-x86_64/wheel/netpyne/plotting copying build/lib/netpyne/plotting/plotCSD.py -> build/bdist.linux-x86_64/wheel/netpyne/plotting copying build/lib/netpyne/plotting/__init__.py -> build/bdist.linux-x86_64/wheel/netpyne/plotting creating build/bdist.linux-x86_64/wheel/netpyne/sim copying build/lib/netpyne/sim/wrappers.py -> build/bdist.linux-x86_64/wheel/netpyne/sim copying build/lib/netpyne/sim/validator.py -> build/bdist.linux-x86_64/wheel/netpyne/sim copying build/lib/netpyne/sim/validate.py -> build/bdist.linux-x86_64/wheel/netpyne/sim copying build/lib/netpyne/sim/utils.py -> build/bdist.linux-x86_64/wheel/netpyne/sim copying build/lib/netpyne/sim/setup.py -> build/bdist.linux-x86_64/wheel/netpyne/sim copying build/lib/netpyne/sim/save.py -> build/bdist.linux-x86_64/wheel/netpyne/sim copying build/lib/netpyne/sim/run.py -> build/bdist.linux-x86_64/wheel/netpyne/sim copying build/lib/netpyne/sim/load.py -> build/bdist.linux-x86_64/wheel/netpyne/sim copying build/lib/netpyne/sim/gather.py -> build/bdist.linux-x86_64/wheel/netpyne/sim copying build/lib/netpyne/sim/__init__.py -> build/bdist.linux-x86_64/wheel/netpyne/sim creating build/bdist.linux-x86_64/wheel/netpyne/specs copying build/lib/netpyne/specs/utils.py -> build/bdist.linux-x86_64/wheel/netpyne/specs copying build/lib/netpyne/specs/simConfig.py -> build/bdist.linux-x86_64/wheel/netpyne/specs copying build/lib/netpyne/specs/netParams.py -> build/bdist.linux-x86_64/wheel/netpyne/specs copying build/lib/netpyne/specs/dicts.py -> build/bdist.linux-x86_64/wheel/netpyne/specs copying build/lib/netpyne/specs/__init__.py -> build/bdist.linux-x86_64/wheel/netpyne/specs creating build/bdist.linux-x86_64/wheel/netpyne/support copying build/lib/netpyne/support/stackedBarGraph.py -> build/bdist.linux-x86_64/wheel/netpyne/support copying build/lib/netpyne/support/scalebar.py -> build/bdist.linux-x86_64/wheel/netpyne/support copying build/lib/netpyne/support/recxelectrode.py -> build/bdist.linux-x86_64/wheel/netpyne/support copying build/lib/netpyne/support/nml_reader.py -> build/bdist.linux-x86_64/wheel/netpyne/support copying build/lib/netpyne/support/morphology.py -> build/bdist.linux-x86_64/wheel/netpyne/support copying build/lib/netpyne/support/morlet.py -> build/bdist.linux-x86_64/wheel/netpyne/support copying build/lib/netpyne/support/filter.py -> build/bdist.linux-x86_64/wheel/netpyne/support copying build/lib/netpyne/support/csd.py -> build/bdist.linux-x86_64/wheel/netpyne/support copying build/lib/netpyne/support/bsmart.py -> build/bdist.linux-x86_64/wheel/netpyne/support copying build/lib/netpyne/support/__init__.py -> build/bdist.linux-x86_64/wheel/netpyne/support creating build/bdist.linux-x86_64/wheel/netpyne/tests copying build/lib/netpyne/tests/validate_tests.py -> build/bdist.linux-x86_64/wheel/netpyne/tests copying build/lib/netpyne/tests/tests.py -> build/bdist.linux-x86_64/wheel/netpyne/tests copying build/lib/netpyne/tests/checks.py -> build/bdist.linux-x86_64/wheel/netpyne/tests copying build/lib/netpyne/tests/__init__.py -> build/bdist.linux-x86_64/wheel/netpyne/tests copying build/lib/netpyne/__init__.py -> build/bdist.linux-x86_64/wheel/netpyne running install_egg_info running egg_info writing netpyne.egg-info/PKG-INFO writing dependency_links to netpyne.egg-info/dependency_links.txt writing requirements to netpyne.egg-info/requires.txt writing top-level names to netpyne.egg-info/top_level.txt reading manifest file 'netpyne.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: manifest_maker: MANIFEST.in, line 2: 'recursive-exclude' expects ... warning: no previously-included files matching '*' found under directory 'examples' warning: no previously-included files matching 'x86_64' found anywhere in distribution warning: no previously-included files matching 'x86_64/*' found anywhere in distribution warning: no previously-included files matching '.libs*' found anywhere in distribution warning: no previously-included files matching '.libs/*' found anywhere in distribution warning: no previously-included files matching '*.pyc' found anywhere in distribution adding license file 'LICENSE' writing manifest file 'netpyne.egg-info/SOURCES.txt' Copying netpyne.egg-info to build/bdist.linux-x86_64/wheel/netpyne-1.0.3.1-py3.11.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/netpyne-1.0.3.1.dist-info/WHEEL creating '/builddir/build/BUILD/netpyne-1.0.3.1/.pyproject-builddir/pip-wheel-50ijhalt/tmp1aqbxi_j/netpyne-1.0.3.1-py3-none-any.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'netpyne/__init__.py' adding 'netpyne/analysis/__init__.py' adding 'netpyne/analysis/csd.py' adding 'netpyne/analysis/csd_legacy.py' adding 'netpyne/analysis/dipole.py' adding 'netpyne/analysis/filter.py' adding 'netpyne/analysis/info.py' adding 'netpyne/analysis/interactive.py' adding 'netpyne/analysis/lfp.py' adding 'netpyne/analysis/lfp_orig.py' adding 'netpyne/analysis/mapping.py' adding 'netpyne/analysis/network.py' adding 'netpyne/analysis/rxd.py' adding 'netpyne/analysis/spikes.py' adding 'netpyne/analysis/spikes_legacy.py' adding 'netpyne/analysis/tools.py' adding 'netpyne/analysis/traces.py' adding 'netpyne/analysis/utils.py' adding 'netpyne/analysis/wrapper.py' adding 'netpyne/batch/__init__.py' adding 'netpyne/batch/asd_parallel.py' adding 'netpyne/batch/batch.py' adding 'netpyne/batch/evol.py' adding 'netpyne/batch/grid.py' adding 'netpyne/batch/optuna_parallel.py' adding 'netpyne/batch/sbi_parallel.py' adding 'netpyne/batch/utils.py' adding 'netpyne/cell/NML2Cell.py' adding 'netpyne/cell/NML2SpikeSource.py' adding 'netpyne/cell/__init__.py' adding 'netpyne/cell/cell.py' adding 'netpyne/cell/compartCell.py' adding 'netpyne/cell/inputs.py' adding 'netpyne/cell/pointCell.py' adding 'netpyne/conversion/__init__.py' adding 'netpyne/conversion/excel.py' adding 'netpyne/conversion/neuromlFormat.py' adding 'netpyne/conversion/neuronPyHoc.py' adding 'netpyne/conversion/pythonScript.py' adding 'netpyne/conversion/sonataImport.py' adding 'netpyne/metadata/__init__.py' adding 'netpyne/metadata/api.py' adding 'netpyne/metadata/metadata.py' adding 'netpyne/network/__init__.py' adding 'netpyne/network/conn.py' adding 'netpyne/network/modify.py' adding 'netpyne/network/netrxd.py' adding 'netpyne/network/network.py' adding 'netpyne/network/pop.py' adding 'netpyne/network/shape.py' adding 'netpyne/network/stim.py' adding 'netpyne/network/subconn.py' adding 'netpyne/plotting/__init__.py' adding 'netpyne/plotting/plotCSD.py' adding 'netpyne/plotting/plotLFPLocations.py' adding 'netpyne/plotting/plotLFPPSD.py' adding 'netpyne/plotting/plotLFPSpectrogram.py' adding 'netpyne/plotting/plotLFPTimeSeries.py' adding 'netpyne/plotting/plotRaster.py' adding 'netpyne/plotting/plotShape.py' adding 'netpyne/plotting/plotSpikeFreq.py' adding 'netpyne/plotting/plotSpikeHist.py' adding 'netpyne/plotting/plotter.py' adding 'netpyne/sim/__init__.py' adding 'netpyne/sim/gather.py' adding 'netpyne/sim/load.py' adding 'netpyne/sim/run.py' adding 'netpyne/sim/save.py' adding 'netpyne/sim/setup.py' adding 'netpyne/sim/utils.py' adding 'netpyne/sim/validate.py' adding 'netpyne/sim/validator.py' adding 'netpyne/sim/wrappers.py' adding 'netpyne/specs/__init__.py' adding 'netpyne/specs/dicts.py' adding 'netpyne/specs/netParams.py' adding 'netpyne/specs/simConfig.py' adding 'netpyne/specs/utils.py' adding 'netpyne/support/__init__.py' adding 'netpyne/support/bsmart.py' adding 'netpyne/support/csd.py' adding 'netpyne/support/filter.py' adding 'netpyne/support/morlet.py' adding 'netpyne/support/morphology.py' adding 'netpyne/support/nml_reader.py' adding 'netpyne/support/recxelectrode.py' adding 'netpyne/support/scalebar.py' adding 'netpyne/support/stackedBarGraph.py' adding 'netpyne/tests/__init__.py' adding 'netpyne/tests/checks.py' adding 'netpyne/tests/tests.py' adding 'netpyne/tests/validate_tests.py' adding 'netpyne-1.0.3.1.dist-info/LICENSE' adding 'netpyne-1.0.3.1.dist-info/METADATA' adding 'netpyne-1.0.3.1.dist-info/WHEEL' adding 'netpyne-1.0.3.1.dist-info/top_level.txt' adding 'netpyne-1.0.3.1.dist-info/RECORD' removing build/bdist.linux-x86_64/wheel Building wheel for netpyne (pyproject.toml): finished with status 'done' Created wheel for netpyne: filename=netpyne-1.0.3.1-py3-none-any.whl size=395037 sha256=b5a39f956ed87d897c80cdd128c81be47d78bba9772f2284535284c9d0665270 Stored in directory: /builddir/.cache/pip/wheels/27/c7/83/d42cdd3a1859eef031fc9517830610707e7370631b765494e5 Successfully built netpyne + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.DfaXlt + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/python-netpyne-1.0.3.1-2.fc39.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/python-netpyne-1.0.3.1-2.fc39.x86_64 ++ dirname /builddir/build/BUILDROOT/python-netpyne-1.0.3.1-2.fc39.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/python-netpyne-1.0.3.1-2.fc39.x86_64 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd netpyne-1.0.3.1 ++ ls /builddir/build/BUILD/netpyne-1.0.3.1/pyproject-wheeldir/netpyne-1.0.3.1-py3-none-any.whl ++ sed -E 's/([^-]+)-([^-]+)-.+\.whl/\1==\2/' ++ xargs basename --multiple + specifier=netpyne==1.0.3.1 + TMPDIR=/builddir/build/BUILD/netpyne-1.0.3.1/.pyproject-builddir + /usr/bin/python3 -m pip install --root /builddir/build/BUILDROOT/python-netpyne-1.0.3.1-2.fc39.x86_64 --prefix /usr --no-deps --disable-pip-version-check --progress-bar off --verbose --ignore-installed --no-warn-script-location --no-index --no-cache-dir --find-links /builddir/build/BUILD/netpyne-1.0.3.1/pyproject-wheeldir netpyne==1.0.3.1 Using pip 23.0.1 from /usr/lib/python3.11/site-packages/pip (python 3.11) Looking in links: /builddir/build/BUILD/netpyne-1.0.3.1/pyproject-wheeldir Processing ./pyproject-wheeldir/netpyne-1.0.3.1-py3-none-any.whl Installing collected packages: netpyne Successfully installed netpyne-1.0.3.1 + '[' -d /builddir/build/BUILDROOT/python-netpyne-1.0.3.1-2.fc39.x86_64/usr/bin ']' + rm -f /builddir/build/BUILD/python-netpyne-1.0.3.1-2.fc39.x86_64-pyproject-ghost-distinfo + site_dirs=() + '[' -d /builddir/build/BUILDROOT/python-netpyne-1.0.3.1-2.fc39.x86_64/usr/lib/python3.11/site-packages ']' + site_dirs+=("/usr/lib/python3.11/site-packages") + '[' /builddir/build/BUILDROOT/python-netpyne-1.0.3.1-2.fc39.x86_64/usr/lib64/python3.11/site-packages '!=' /builddir/build/BUILDROOT/python-netpyne-1.0.3.1-2.fc39.x86_64/usr/lib/python3.11/site-packages ']' + '[' -d /builddir/build/BUILDROOT/python-netpyne-1.0.3.1-2.fc39.x86_64/usr/lib64/python3.11/site-packages ']' + for site_dir in ${site_dirs[@]} + for distinfo in /builddir/build/BUILDROOT/python-netpyne-1.0.3.1-2.fc39.x86_64$site_dir/*.dist-info + echo '%ghost /usr/lib/python3.11/site-packages/netpyne-1.0.3.1.dist-info' + sed -i s/pip/rpm/ /builddir/build/BUILDROOT/python-netpyne-1.0.3.1-2.fc39.x86_64/usr/lib/python3.11/site-packages/netpyne-1.0.3.1.dist-info/INSTALLER + PYTHONPATH=/usr/lib/rpm/redhat + /usr/bin/python3 -B /usr/lib/rpm/redhat/pyproject_preprocess_record.py --buildroot /builddir/build/BUILDROOT/python-netpyne-1.0.3.1-2.fc39.x86_64 --record /builddir/build/BUILDROOT/python-netpyne-1.0.3.1-2.fc39.x86_64/usr/lib/python3.11/site-packages/netpyne-1.0.3.1.dist-info/RECORD --output /builddir/build/BUILD/python-netpyne-1.0.3.1-2.fc39.x86_64-pyproject-record + rm -fv /builddir/build/BUILDROOT/python-netpyne-1.0.3.1-2.fc39.x86_64/usr/lib/python3.11/site-packages/netpyne-1.0.3.1.dist-info/RECORD removed '/builddir/build/BUILDROOT/python-netpyne-1.0.3.1-2.fc39.x86_64/usr/lib/python3.11/site-packages/netpyne-1.0.3.1.dist-info/RECORD' + rm -fv /builddir/build/BUILDROOT/python-netpyne-1.0.3.1-2.fc39.x86_64/usr/lib/python3.11/site-packages/netpyne-1.0.3.1.dist-info/REQUESTED removed '/builddir/build/BUILDROOT/python-netpyne-1.0.3.1-2.fc39.x86_64/usr/lib/python3.11/site-packages/netpyne-1.0.3.1.dist-info/REQUESTED' ++ wc -l /builddir/build/BUILD/python-netpyne-1.0.3.1-2.fc39.x86_64-pyproject-ghost-distinfo ++ cut -f1 '-d ' + lines=1 + '[' 1 -ne 1 ']' + /usr/bin/python3 /usr/lib/rpm/redhat/pyproject_save_files.py --output-files /builddir/build/BUILD/python-netpyne-1.0.3.1-2.fc39.x86_64-pyproject-files --output-modules /builddir/build/BUILD/python-netpyne-1.0.3.1-2.fc39.x86_64-pyproject-modules --buildroot /builddir/build/BUILDROOT/python-netpyne-1.0.3.1-2.fc39.x86_64 --sitelib /usr/lib/python3.11/site-packages --sitearch /usr/lib64/python3.11/site-packages --python-version 3.11 --pyproject-record /builddir/build/BUILD/python-netpyne-1.0.3.1-2.fc39.x86_64-pyproject-record --prefix /usr netpyne + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/brp-strip /usr/bin/strip + /usr/lib/rpm/brp-strip-comment-note /usr/bin/strip /usr/bin/objdump + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2 Bytecompiling .py files below /builddir/build/BUILDROOT/python-netpyne-1.0.3.1-2.fc39.x86_64/usr/lib/python3.11 using python3.11 /usr/lib/python3.11/site-packages/netpyne/analysis/csd_legacy.py:540: SyntaxWarning: "is" with a literal. Did you mean "=="? /usr/lib/python3.11/site-packages/netpyne/analysis/csd_legacy.py:540: SyntaxWarning: "is" with a literal. Did you mean "=="? /usr/lib/python3.11/site-packages/netpyne/analysis/csd_legacy.py:540: SyntaxWarning: "is" with a literal. Did you mean "=="? /usr/lib/python3.11/site-packages/netpyne/analysis/csd_legacy.py:540: SyntaxWarning: "is" with a literal. Did you mean "=="? /usr/lib/python3.11/site-packages/netpyne/analysis/spikes_legacy.py:519: SyntaxWarning: "is" with a literal. Did you mean "=="? /usr/lib/python3.11/site-packages/netpyne/analysis/spikes_legacy.py:519: SyntaxWarning: "is" with a literal. Did you mean "=="? /usr/lib/python3.11/site-packages/netpyne/plotting/plotCSD.py:195: SyntaxWarning: "is" with a literal. Did you mean "=="? /usr/lib/python3.11/site-packages/netpyne/plotting/plotCSD.py:195: SyntaxWarning: "is" with a literal. Did you mean "=="? /usr/lib/python3.11/site-packages/netpyne/plotting/plotCSD.py:195: SyntaxWarning: "is" with a literal. Did you mean "=="? /usr/lib/python3.11/site-packages/netpyne/plotting/plotCSD.py:195: SyntaxWarning: "is" with a literal. Did you mean "=="? /usr/lib/python3.11/site-packages/netpyne/support/stackedBarGraph.py:210: SyntaxWarning: "is not" with a literal. Did you mean "!="? /usr/lib/python3.11/site-packages/netpyne/support/stackedBarGraph.py:210: SyntaxWarning: "is not" with a literal. Did you mean "!="? + /usr/lib/rpm/redhat/brp-python-hardlink Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.PxeBiT + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd netpyne-1.0.3.1 + '[' '!' -f /builddir/build/BUILD/python-netpyne-1.0.3.1-2.fc39.x86_64-pyproject-modules ']' + PATH=/builddir/build/BUILDROOT/python-netpyne-1.0.3.1-2.fc39.x86_64/usr/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin + PYTHONPATH=/builddir/build/BUILDROOT/python-netpyne-1.0.3.1-2.fc39.x86_64/usr/lib64/python3.11/site-packages:/builddir/build/BUILDROOT/python-netpyne-1.0.3.1-2.fc39.x86_64/usr/lib/python3.11/site-packages + _PYTHONSITE=/builddir/build/BUILDROOT/python-netpyne-1.0.3.1-2.fc39.x86_64/usr/lib64/python3.11/site-packages:/builddir/build/BUILDROOT/python-netpyne-1.0.3.1-2.fc39.x86_64/usr/lib/python3.11/site-packages + PYTHONDONTWRITEBYTECODE=1 + /usr/bin/python3 -sP /usr/lib/rpm/redhat/import_all_modules.py -f /builddir/build/BUILD/python-netpyne-1.0.3.1-2.fc39.x86_64-pyproject-modules -e '*optuna*' -e '*sbi*' Check import: netpyne Warning: no DISPLAY environment variable. --No graphics will be displayed. Check import: netpyne.analysis Check import: netpyne.analysis.csd Check import: netpyne.analysis.csd_legacy Check import: netpyne.analysis.dipole Check import: netpyne.analysis.filter Check import: netpyne.analysis.info Check import: netpyne.analysis.interactive Check import: netpyne.analysis.lfp Check import: netpyne.analysis.lfp_orig Check import: netpyne.analysis.mapping Check import: netpyne.analysis.network Check import: netpyne.analysis.rxd Check import: netpyne.analysis.spikes Check import: netpyne.analysis.spikes_legacy Check import: netpyne.analysis.tools Check import: netpyne.analysis.traces Check import: netpyne.analysis.utils Check import: netpyne.analysis.wrapper Check import: netpyne.batch Check import: netpyne.batch.asd_parallel Check import: netpyne.batch.batch Check import: netpyne.batch.evol Check import: netpyne.batch.grid Check import: netpyne.batch.utils Check import: netpyne.cell Check import: netpyne.cell.NML2Cell Check import: netpyne.cell.NML2SpikeSource Check import: netpyne.cell.cell Check import: netpyne.cell.compartCell Check import: netpyne.cell.inputs Check import: netpyne.cell.pointCell Check import: netpyne.conversion Check import: netpyne.conversion.excel Check import: netpyne.conversion.neuromlFormat Check import: netpyne.conversion.neuronPyHoc Check import: netpyne.conversion.pythonScript Check import: netpyne.conversion.sonataImport Check import: netpyne.metadata Check import: netpyne.metadata.api Check import: netpyne.metadata.metadata Check import: netpyne.network Check import: netpyne.network.conn Check import: netpyne.network.modify Check import: netpyne.network.netrxd Check import: netpyne.network.network Check import: netpyne.network.pop Check import: netpyne.network.shape Check import: netpyne.network.stim Check import: netpyne.network.subconn Check import: netpyne.plotting Check import: netpyne.plotting.plotCSD Check import: netpyne.plotting.plotLFPLocations Check import: netpyne.plotting.plotLFPPSD Check import: netpyne.plotting.plotLFPSpectrogram Check import: netpyne.plotting.plotLFPTimeSeries Check import: netpyne.plotting.plotRaster Check import: netpyne.plotting.plotShape Check import: netpyne.plotting.plotSpikeFreq Check import: netpyne.plotting.plotSpikeHist Check import: netpyne.plotting.plotter Check import: netpyne.sim Check import: netpyne.sim.gather Check import: netpyne.sim.load Check import: netpyne.sim.run Check import: netpyne.sim.save Check import: netpyne.sim.setup Check import: netpyne.sim.utils Check import: netpyne.sim.validate Check import: netpyne.sim.validator Check import: netpyne.sim.wrappers Check import: netpyne.specs Check import: netpyne.specs.dicts Check import: netpyne.specs.netParams Check import: netpyne.specs.simConfig Check import: netpyne.specs.utils Check import: netpyne.support Check import: netpyne.support.bsmart Check import: netpyne.support.csd Check import: netpyne.support.filter Check import: netpyne.support.morlet Check import: netpyne.support.morphology Check import: netpyne.support.nml_reader Check import: netpyne.support.recxelectrode Check import: netpyne.support.scalebar Check import: netpyne.support.stackedBarGraph Check import: netpyne.tests Check import: netpyne.tests.checks Check import: netpyne.tests.tests Check import: netpyne.tests.validate_tests Note: SONATA import failed; import/export functions for SONATA will not be available. To use this feature install these Python packages: ['tables', 'pyneuroml', 'neuroml'] ERROR: popParams->'cellModel': No cellModel specified in population parameters..Values provided are: {'cellType': 'PYR', 'numCells': 50} + export PYTHONPATH=/builddir/build/BUILDROOT/python-netpyne-1.0.3.1-2.fc39.x86_64//usr/lib/python3.11/site-packages ~/build/BUILD/netpyne-1.0.3.1/doc/source/code ~/build/BUILD/netpyne-1.0.3.1 + PYTHONPATH=/builddir/build/BUILDROOT/python-netpyne-1.0.3.1-2.fc39.x86_64//usr/lib/python3.11/site-packages + pushd doc/source/code + nrnivmodl mod /builddir/build/BUILD/netpyne-1.0.3.1/doc/source/code Mod files: "mod/mod/A.mod" "mod/mod/AMPA.mod" "mod/mod/ElectSyn.mod" "mod/mod/GABAa.mod" "mod/mod/GradedSyn.mod" "mod/mod/MyExp2SynBB.mod" "mod/mod/MyExp2SynNMDABB.mod" "mod/mod/NMDA.mod" "mod/mod/Nca.mod" "mod/mod/OFThpo.mod" "mod/mod/OFThresh.mod" "mod/mod/ar.mod" "mod/mod/cad.mod" "mod/mod/cadad.mod" "mod/mod/cal.mod" "mod/mod/cat.mod" "mod/mod/expsynstdp.mod" "mod/mod/iholmw.mod" "mod/mod/izhi2003a.mod" "mod/mod/izhi2003b.mod" "mod/mod/izhi2007a.mod" "mod/mod/izhi2007b.mod" "mod/mod/k2.mod" "mod/mod/ka.mod" "mod/mod/kacurrent.mod" "mod/mod/kahp.mod" "mod/mod/kc.mod" "mod/mod/kca.mod" "mod/mod/kdr.mod" "mod/mod/kdrcurrent.mod" "mod/mod/km.mod" "mod/mod/km2.mod" "mod/mod/kv.mod" "mod/mod/nacurrent.mod" "mod/mod/naf.mod" "mod/mod/nap.mod" "mod/mod/naz.mod" "mod/mod/vecevent.mod" Creating 'x86_64' directory for .o files. -> Compiling mod_func.cpp -> NMODL ../mod/AMPA.mod -> NMODL ../mod/A.mod Translating A.mod into /builddir/build/BUILD/netpyne-1.0.3.1/doc/source/code/x86_64/A.c INCLUDEing ofc.inc Thread Safe Translating AMPA.mod into /builddir/build/BUILD/netpyne-1.0.3.1/doc/source/code/x86_64/AMPA.c -> NMODL ../mod/ElectSyn.mod INCLUDEing ../netcon.inc Thread Safe -> NMODL ../mod/GABAa.mod Translating GABAa.mod into /builddir/build/BUILD/netpyne-1.0.3.1/doc/source/code/x86_64/GABAa.c INCLUDEing ../netcon.inc Thread Safe -> NMODL ../mod/GradedSyn.mod Translating ElectSyn.mod into /builddir/build/BUILD/netpyne-1.0.3.1/doc/source/code/x86_64/ElectSyn.c Thread Safe -> NMODL ../mod/MyExp2SynBB.mod Translating MyExp2SynBB.mod into /builddir/build/BUILD/netpyne-1.0.3.1/doc/source/code/x86_64/MyExp2SynBB.c Thread Safe Translating GradedSyn.mod into /builddir/build/BUILD/netpyne-1.0.3.1/doc/source/code/x86_64/GradedSyn.c -> NMODL ../mod/MyExp2SynNMDABB.mod Thread Safe -> NMODL ../mod/NMDA.mod Translating NMDA.mod into /builddir/build/BUILD/netpyne-1.0.3.1/doc/source/code/x86_64/NMDA.c INCLUDEing ../netcon.inc Thread Safe -> NMODL ../mod/Nca.mod -> NMODL ../mod/OFThpo.mod Translating MyExp2SynNMDABB.mod into /builddir/build/BUILD/netpyne-1.0.3.1/doc/source/code/x86_64/MyExp2SynNMDABB.c Thread Safe Translating Nca.mod into /builddir/build/BUILD/netpyne-1.0.3.1/doc/source/code/x86_64/Nca.c Notice: Assignment to the GLOBAL variable, "tadj", is not thread safe Translating OFThpo.mod into /builddir/build/BUILD/netpyne-1.0.3.1/doc/source/code/x86_64/OFThpo.c -> NMODL ../mod/OFThresh.mod -> NMODL ../mod/ar.mod Thread Safe -> NMODL ../mod/cad.mod Translating OFThresh.mod into /builddir/build/BUILD/netpyne-1.0.3.1/doc/source/code/x86_64/OFThresh.c Thread Safe Translating cad.mod into /builddir/build/BUILD/netpyne-1.0.3.1/doc/source/code/x86_64/cad.c -> NMODL ../mod/cadad.mod Translating ar.mod into /builddir/build/BUILD/netpyne-1.0.3.1/doc/source/code/x86_64/ar.c Thread Safe Thread Safe -> NMODL ../mod/cal.mod -> NMODL ../mod/cat.mod Translating cat.mod into /builddir/build/BUILD/netpyne-1.0.3.1/doc/source/code/x86_64/cat.c -> NMODL ../mod/expsynstdp.mod Translating cal.mod into /builddir/build/BUILD/netpyne-1.0.3.1/doc/source/code/x86_64/cal.c Thread Safe Thread Safe Translating cadad.mod into /builddir/build/BUILD/netpyne-1.0.3.1/doc/source/code/x86_64/cadad.c Thread Safe -> NMODL ../mod/iholmw.mod -> NMODL ../mod/izhi2003b.mod -> NMODL ../mod/izhi2003a.mod Translating expsynstdp.mod into /builddir/build/BUILD/netpyne-1.0.3.1/doc/source/code/x86_64/expsynstdp.c Thread Safe Translating izhi2003b.mod into /builddir/build/BUILD/netpyne-1.0.3.1/doc/source/code/x86_64/izhi2003b.c Translating iholmw.mod into /builddir/build/BUILD/netpyne-1.0.3.1/doc/source/code/x86_64/iholmw.c Thread Safe INCLUDEing aux_fun.inc Thread Safe -> NMODL ../mod/izhi2007a.mod -> NMODL ../mod/izhi2007b.mod Translating izhi2003a.mod into /builddir/build/BUILD/netpyne-1.0.3.1/doc/source/code/x86_64/izhi2003a.c Thread Safe Translating izhi2007a.mod into /builddir/build/BUILD/netpyne-1.0.3.1/doc/source/code/x86_64/izhi2007a.c -> NMODL ../mod/k2.mod Notice: VERBATIM blocks are not thread safe -> NMODL ../mod/ka.mod Translating izhi2007b.mod into /builddir/build/BUILD/netpyne-1.0.3.1/doc/source/code/x86_64/izhi2007b.c Translating k2.mod into /builddir/build/BUILD/netpyne-1.0.3.1/doc/source/code/x86_64/k2.c Thread Safe Notice: VERBATIM blocks are not thread safe -> NMODL ../mod/kacurrent.mod Translating ka.mod into /builddir/build/BUILD/netpyne-1.0.3.1/doc/source/code/x86_64/ka.c -> NMODL ../mod/kahp.mod Thread Safe Translating kacurrent.mod into /builddir/build/BUILD/netpyne-1.0.3.1/doc/source/code/x86_64/kacurrent.c Thread Safe -> NMODL ../mod/kc.mod -> NMODL ../mod/kca.mod -> NMODL ../mod/kdr.mod Translating kahp.mod into /builddir/build/BUILD/netpyne-1.0.3.1/doc/source/code/x86_64/kahp.c Thread Safe Translating kc.mod into /builddir/build/BUILD/netpyne-1.0.3.1/doc/source/code/x86_64/kc.c Thread Safe -> NMODL ../mod/kdrcurrent.mod -> NMODL ../mod/km.mod Translating kca.mod into /builddir/build/BUILD/netpyne-1.0.3.1/doc/source/code/x86_64/kca.c Translating kdr.mod into /builddir/build/BUILD/netpyne-1.0.3.1/doc/source/code/x86_64/kdr.c Notice: Assignment to the GLOBAL variable, "tadj", is not thread safe Thread Safe Translating kdrcurrent.mod into /builddir/build/BUILD/netpyne-1.0.3.1/doc/source/code/x86_64/kdrcurrent.c -> NMODL ../mod/km2.mod Thread Safe -> NMODL ../mod/kv.mod Translating km.mod into /builddir/build/BUILD/netpyne-1.0.3.1/doc/source/code/x86_64/km.c Thread Safe Translating km2.mod into /builddir/build/BUILD/netpyne-1.0.3.1/doc/source/code/x86_64/km2.c Thread Safe -> NMODL ../mod/nacurrent.mod -> NMODL ../mod/nap.mod -> NMODL ../mod/naf.mod Translating kv.mod into /builddir/build/BUILD/netpyne-1.0.3.1/doc/source/code/x86_64/kv.c Translating nacurrent.mod into /builddir/build/BUILD/netpyne-1.0.3.1/doc/source/code/x86_64/nacurrent.c Notice: Assignment to the GLOBAL variable, "ntau", is not thread safe Notice: Assignment to the GLOBAL variable, "ninf", is not thread safe Notice: Assignment to the GLOBAL variable, "tadj", is not thread safe Thread Safe Translating nap.mod into /builddir/build/BUILD/netpyne-1.0.3.1/doc/source/code/x86_64/nap.c Translating naf.mod into /builddir/build/BUILD/netpyne-1.0.3.1/doc/source/code/x86_64/naf.c Thread Safe Thread Safe -> NMODL ../mod/naz.mod -> NMODL ../mod/vecevent.mod -> Compiling A.c Translating naz.mod into /builddir/build/BUILD/netpyne-1.0.3.1/doc/source/code/x86_64/naz.c Notice: Assignment to the GLOBAL variable, "htau", is not thread safe Notice: Assignment to the GLOBAL variable, "hinf", is not thread safe Notice: Assignment to the GLOBAL variable, "mtau", is not thread safe Notice: Assignment to the GLOBAL variable, "minf", is not thread safe Notice: Assignment to the GLOBAL variable, "tadj", is not thread safe -> Compiling AMPA.c Translating vecevent.mod into /builddir/build/BUILD/netpyne-1.0.3.1/doc/source/code/x86_64/vecevent.c Thread Safe Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it only affects and is affected by discrete events. As such it is not located in a section and is not associated with an integrator -> Compiling ElectSyn.c -> Compiling GABAa.c -> Compiling GradedSyn.c -> Compiling MyExp2SynBB.c -> Compiling MyExp2SynNMDABB.c -> Compiling NMDA.c -> Compiling Nca.c -> Compiling OFThpo.c -> Compiling OFThresh.c -> Compiling ar.c -> Compiling cad.c -> Compiling cadad.c -> Compiling cal.c -> Compiling cat.c -> Compiling expsynstdp.c -> Compiling iholmw.c -> Compiling izhi2003a.c -> Compiling izhi2003b.c -> Compiling izhi2007a.c -> Compiling izhi2007b.c -> Compiling k2.c -> Compiling ka.c -> Compiling kacurrent.c -> Compiling kahp.c -> Compiling kc.c -> Compiling kca.c -> Compiling kdr.c -> Compiling kdrcurrent.c -> Compiling km.c -> Compiling km2.c -> Compiling kv.c -> Compiling nacurrent.c -> Compiling naf.c -> Compiling nap.c -> Compiling naz.c -> Compiling vecevent.c => LINKING shared library ./libnrnmech.so => LINKING executable ./special LDFLAGS are: -lreadline -lcurses -lform -lpython3.11 -lX11 -lXext Successfully created x86_64/special + /usr/bin/python3 tut2.py --nogui Warning: no DISPLAY environment variable. --No graphics will be displayed. Start time: 2023-04-05 07:56:13.454100 Creating network of 2 cell populations on 1 hosts... Number of cells on node 0: 40 Done; cell creation time = 0.01 s. Making connections... Number of connections on node 0: 240 Done; cell connection time = 0.03 s. Adding stims... Number of stims on node 0: 40 Done; cell stims creation time = 0.01 s. Recording 1 traces of 1 types on node 0 Running simulation using NEURON for 1000.0 ms... Done; run time = 0.63 s; real-time ratio: 1.58. Gathering data... Done; gather time = 0.01 s. Analyzing... Cells: 40 Connections: 280 (7.00 per cell) Spikes: 931 (23.27 Hz) Simulated time: 1.0 s; 1 workers Run time: 0.63 s Saving output as tut2_data.json ... Finished saving! Done; saving time = 0.04 s. Preparing spike data... Plotting raster... There was an exception in plotRaster(): 'object' object has no attribute 'startswith' (, AttributeError("'object' object has no attribute 'startswith'"), ) Plotting recorded cell traces ... cell Plotting 2D representation of network cell locations and connections... Done; plotting time = 0.51 s Total time = 1.23 s + /usr/bin/python3 tut3.py --nogui Warning: no DISPLAY environment variable. --No graphics will be displayed. Start time: 2023-04-05 07:56:15.850985 Creating network of 2 cell populations on 1 hosts... Number of cells on node 0: 40 Done; cell creation time = 0.01 s. Making connections... Number of connections on node 0: 203 Done; cell connection time = 0.02 s. Adding stims... Number of stims on node 0: 40 Done; cell stims creation time = 0.00 s. Recording 1 traces of 1 types on node 0 Running simulation using NEURON for 1000.0 ms... Done; run time = 0.55 s; real-time ratio: 1.80. Gathering data... Done; gather time = 0.01 s. Analyzing... Cells: 40 Connections: 243 (6.08 per cell) Spikes: 560 (14.00 Hz) Simulated time: 1.0 s; 1 workers Run time: 0.55 s Warning: data won't be saved. No output format specified (consider sim.cfg.savePickle, sim.cfg.saveJson etc.) Preparing spike data... Plotting raster... There was an exception in plotRaster(): 'object' object has no attribute 'startswith' (, AttributeError("'object' object has no attribute 'startswith'"), ) Plotting recorded cell traces ... cell Plotting 2D representation of network cell locations and connections... Done; plotting time = 0.45 s Total time = 1.05 s + /usr/bin/python3 tut4.py --nogui Warning: no DISPLAY environment variable. --No graphics will be displayed. Start time: 2023-04-05 07:56:18.022914 Creating network of 2 cell populations on 1 hosts... Number of cells on node 0: 40 Done; cell creation time = 0.01 s. Making connections... Number of connections on node 0: 33 Done; cell connection time = 0.01 s. Adding stims... Number of stims on node 0: 40 Done; cell stims creation time = 0.00 s. Recording 1 traces of 1 types on node 0 Running simulation using NEURON for 1000.0 ms... Done; run time = 0.36 s; real-time ratio: 2.80. Gathering data... Done; gather time = 0.01 s. Analyzing... Cells: 40 Connections: 73 (1.82 per cell) Spikes: 1186 (29.65 Hz) Simulated time: 1.0 s; 1 workers Run time: 0.36 s Warning: data won't be saved. No output format specified (consider sim.cfg.savePickle, sim.cfg.saveJson etc.) Preparing spike data... Plotting raster... There was an exception in plotRaster(): 'object' object has no attribute 'startswith' (, AttributeError("'object' object has no attribute 'startswith'"), ) Plotting recorded cell traces ... cell Plotting 2D representation of network cell locations and connections... Done; plotting time = 0.38 s Total time = 0.76 s + /usr/bin/python3 tut5.py --nogui Warning: no DISPLAY environment variable. --No graphics will be displayed. Start time: 2023-04-05 07:56:19.932636 Creating network of 6 cell populations on 1 hosts... Number of cells on node 0: 300 Done; cell creation time = 0.03 s. Making connections... Number of connections on node 0: 6796 Done; cell connection time = 1.14 s. Adding stims... Number of stims on node 0: 300 Done; cell stims creation time = 0.03 s. Recording 0 traces of 0 types on node 0 Running simulation using NEURON for 1000.0 ms... Done; run time = 10.13 s; real-time ratio: 0.10. Gathering data... Done; gather time = 0.17 s. Analyzing... Cells: 300 Connections: 7096 (23.65 per cell) Spikes: 4808 (16.03 Hz) Simulated time: 1.0 s; 1 workers Run time: 10.13 s Warning: data won't be saved. No output format specified (consider sim.cfg.savePickle, sim.cfg.saveJson etc.) Preparing spike data... Plotting raster... There was an exception in plotRaster(): 'object' object has no attribute 'startswith' (, AttributeError("'object' object has no attribute 'startswith'"), ) Done; plotting time = 0.19 s Total time = 11.70 s + /usr/bin/python3 tut6.py --nogui Warning: no DISPLAY environment variable. --No graphics will be displayed. Start time: 2023-04-05 07:56:32.779371 Creating network of 2 cell populations on 1 hosts... Number of cells on node 0: 40 Done; cell creation time = 0.00 s. Making connections... Number of connections on node 0: 0 Done; cell connection time = 0.00 s. Adding stims... Number of stims on node 0: 48 Done; cell stims creation time = 0.00 s. Recording 2 traces of 1 types on node 0 Running simulation using NEURON for 1000.0 ms... Done; run time = 0.32 s; real-time ratio: 3.10. Gathering data... Done; gather time = 0.00 s. Analyzing... Cells: 40 Connections: 16 (0.40 per cell) Spikes: 134 (3.35 Hz) Simulated time: 1.0 s; 1 workers Run time: 0.32 s Warning: data won't be saved. No output format specified (consider sim.cfg.savePickle, sim.cfg.saveJson etc.) Preparing spike data... Plotting raster... There was an exception in plotRaster(): 'object' object has no attribute 'startswith' (, AttributeError("'object' object has no attribute 'startswith'"), ) Plotting recorded cell traces ... cell Done; plotting time = 0.30 s Total time = 0.64 s + /usr/bin/python3 tut7.py --nogui Warning: no DISPLAY environment variable. --No graphics will be displayed. Start time: 2023-04-05 07:56:34.591817 Creating network of 1 cell populations on 1 hosts... Number of cells on node 0: 50 Done; cell creation time = 0.01 s. Making connections... Number of connections on node 0: 2450 Done; cell connection time = 0.29 s. Adding stims... Number of stims on node 0: 50 Done; cell stims creation time = 0.01 s. Recording 1 traces of 1 types on node 0 Running simulation using NEURON for 500.0 ms... Done; run time = 1.56 s; real-time ratio: 0.32. Gathering data... Done; gather time = 0.06 s. Analyzing... Cells: 50 Connections: 2500 (50.00 per cell) Spikes: 1261 (50.44 Hz) Simulated time: 0.5 s; 1 workers Run time: 1.56 s Warning: data won't be saved. No output format specified (consider sim.cfg.savePickle, sim.cfg.saveJson etc.) Preparing spike data... Plotting raster... There was an exception in plotRaster(): 'object' object has no attribute 'startswith' (, AttributeError("'object' object has no attribute 'startswith'"), ) Plotting recorded cell traces ... cell Plotting 2D representation of network cell locations and connections... Done; plotting time = 1.80 s Total time = 3.72 s Modfying connection parameters... Done; connections modification time = 0.01 s. Running simulation using NEURON for 500.0 ms... Done; run time = 1.70 s; real-time ratio: 0.29. Gathering data... Done; gather time = 0.06 s. Analyzing... Cells: 50 Connections: 2500 (50.00 per cell) Spikes: 583 (23.32 Hz) Simulated time: 0.5 s; 1 workers Run time: 1.70 s Warning: data won't be saved. No output format specified (consider sim.cfg.savePickle, sim.cfg.saveJson etc.) Preparing spike data... Plotting raster... There was an exception in plotRaster(): 'NoneType' object has no attribute 'plot' (, AttributeError("'NoneType' object has no attribute 'plot'"), ) Plotting recorded cell traces ... cell Plotting 2D representation of network cell locations and connections... Done; plotting time = 1.77 s Modfying cell parameters... Done; cells modification time = 0.00 s. Running simulation using NEURON for 500.0 ms... Done; run time = 1.79 s; real-time ratio: 0.28. Gathering data... Done; gather time = 0.06 s. Analyzing... Cells: 50 Connections: 2500 (50.00 per cell) Spikes: 332 (13.28 Hz) Simulated time: 0.5 s; 1 workers Run time: 1.79 s Preparing spike data... Plotting raster... Plotting recorded cell traces ... cell + popd ~/build/BUILD/netpyne-1.0.3.1 + pushd examples/HHTut ~/build/BUILD/netpyne-1.0.3.1/examples/HHTut ~/build/BUILD/netpyne-1.0.3.1 + /usr/bin/python3 HHTut_run.py -nogui Warning: no DISPLAY environment variable. --No graphics will be displayed. Start time: 2023-04-05 07:56:45.249657 NetParams validation successful ... Creating network of 1 cell populations on 1 hosts... Number of cells on node 0: 200 Done; cell creation time = 0.02 s. Making connections... Number of connections on node 0: 1623 Done; cell connection time = 0.23 s. Adding stims... Number of stims on node 0: 200 Done; cell stims creation time = 0.02 s. Recording 201 traces of 2 types on node 0 Running simulation using NEURON for 1000.0 ms... Done; run time = 3.99 s; real-time ratio: 0.25. Gathering data... Done; gather time = 0.06 s. Analyzing... Cells: 200 Connections: 1823 (9.12 per cell) Spikes: 2053 (10.27 Hz) Simulated time: 1.0 s; 1 workers Run time: 3.99 s Saving output as HHTut_data.json ... Finished saving! Done; saving time = 0.10 s. + popd ~/build/BUILD/netpyne-1.0.3.1 + pushd examples/HybridTut ~/build/BUILD/netpyne-1.0.3.1/examples/HybridTut ~/build/BUILD/netpyne-1.0.3.1 + nrnivmodl . /builddir/build/BUILD/netpyne-1.0.3.1/examples/HybridTut Mod files: "././izhi2007b.mod" Creating 'x86_64' directory for .o files. -> Compiling mod_func.cpp -> NMODL .././izhi2007b.mod Translating izhi2007b.mod into /builddir/build/BUILD/netpyne-1.0.3.1/examples/HybridTut/x86_64/izhi2007b.c Notice: VERBATIM blocks are not thread safe -> Compiling izhi2007b.c => LINKING shared library ./libnrnmech.so => LINKING executable ./special LDFLAGS are: -lreadline -lcurses -lform -lpython3.11 -lX11 -lXext Successfully created x86_64/special + /usr/bin/python3 HybridTut_run.py -nogui Warning: no DISPLAY environment variable. --No graphics will be displayed. Start time: 2023-04-05 07:56:51.468470 Creating network of 2 cell populations on 1 hosts... Number of cells on node 0: 100 Done; cell creation time = 0.01 s. Making connections... Number of connections on node 0: 256 Done; cell connection time = 0.03 s. Adding stims... Number of stims on node 0: 100 Done; cell stims creation time = 0.01 s. Recording 108 traces of 6 types on node 0 Running simulation using NEURON for 1000.0 ms... Done; run time = 1.07 s; real-time ratio: 0.93. Gathering data... Done; gather time = 0.10 s. Analyzing... Cells: 100 Connections: 356 (3.56 per cell) Spikes: 2586 (25.86 Hz) Simulated time: 1.0 s; 1 workers Run time: 1.07 s Warning: data won't be saved. No output format specified (consider sim.cfg.savePickle, sim.cfg.saveJson etc.) + popd ~/build/BUILD/netpyne-1.0.3.1 + pushd examples/M1 ~/build/BUILD/netpyne-1.0.3.1/examples/M1 ~/build/BUILD/netpyne-1.0.3.1 + nrnivmodl . /builddir/build/BUILD/netpyne-1.0.3.1/examples/M1 Mod files: "././izhi2007b.mod" Creating 'x86_64' directory for .o files. -> Compiling mod_func.cpp -> NMODL .././izhi2007b.mod Translating izhi2007b.mod into /builddir/build/BUILD/netpyne-1.0.3.1/examples/M1/x86_64/izhi2007b.c Notice: VERBATIM blocks are not thread safe -> Compiling izhi2007b.c => LINKING shared library ./libnrnmech.so => LINKING executable ./special LDFLAGS are: -lreadline -lcurses -lform -lpython3.11 -lX11 -lXext Successfully created x86_64/special + /usr/bin/python3 M1_run.py -nogui Warning: no DISPLAY environment variable. --No graphics will be displayed. Start time: 2023-04-05 07:56:54.523591 Creating network of 13 cell populations on 1 hosts... Number of cells on node 0: 292 Done; cell creation time = 0.09 s. Making connections... Number of connections on node 0: 4561 Number of synaptic contacts on node 0: 4595 Done; cell connection time = 0.77 s. Adding stims... Number of stims on node 0: 292 Done; cell stims creation time = 0.03 s. Recording 4 traces of 1 types on node 0 Running simulation using NEURON for 2000.0 ms... Done; run time = 1.65 s; real-time ratio: 1.21. Gathering data... Done; gather time = 0.10 s. Analyzing... Cells: 292 Connections: 4853 (16.62 per cell) Synaptic contacts: 4887 (16.74 per cell) Spikes: 14387 (24.64 Hz) Simulated time: 2.0 s; 1 workers Run time: 1.65 s Warning: data won't be saved. No output format specified (consider sim.cfg.savePickle, sim.cfg.saveJson etc.) + popd ~/build/BUILD/netpyne-1.0.3.1 + pushd examples/PTcell ~/build/BUILD/netpyne-1.0.3.1/examples/PTcell ~/build/BUILD/netpyne-1.0.3.1 + nrnivmodl mod /builddir/build/BUILD/netpyne-1.0.3.1/examples/PTcell Mod files: "mod/mod/HCN1.mod" "mod/mod/IC.mod" "mod/mod/IKsin.mod" "mod/mod/MyExp2SynBB.mod" "mod/mod/MyExp2SynNMDABB.mod" "mod/mod/ar_traub.mod" "mod/mod/cadad.mod" "mod/mod/cadyn.mod" "mod/mod/cagk.mod" "mod/mod/cal_mh.mod" "mod/mod/cal_mig.mod" "mod/mod/can_mig.mod" "mod/mod/canin.mod" "mod/mod/cat_mig.mod" "mod/mod/cat_traub.mod" "mod/mod/catcb.mod" "mod/mod/gabab.mod" "mod/mod/h_BS.mod" "mod/mod/h_harnett.mod" "mod/mod/h_kole.mod" "mod/mod/h_migliore.mod" "mod/mod/hin.mod" "mod/mod/ican_sidi.mod" "mod/mod/kBK.mod" "mod/mod/kap_BS.mod" "mod/mod/kapcb.mod" "mod/mod/kapin.mod" "mod/mod/kctin.mod" "mod/mod/kdmc_BS.mod" "mod/mod/kdr_BS.mod" "mod/mod/kdrin.mod" "mod/mod/nafx.mod" "mod/mod/nap_sidi.mod" "mod/mod/nax_BS.mod" "mod/mod/savedist.mod" "mod/mod/vecstim.mod" Creating 'x86_64' directory for .o files. -> Compiling mod_func.cpp -> NMODL ../mod/HCN1.mod -> NMODL ../mod/IC.mod Translating IC.mod into /builddir/build/BUILD/netpyne-1.0.3.1/examples/PTcell/x86_64/IC.c Thread Safe -> NMODL ../mod/IKsin.mod Translating HCN1.mod into /builddir/build/BUILD/netpyne-1.0.3.1/examples/PTcell/x86_64/HCN1.c -> NMODL ../mod/MyExp2SynBB.mod Thread Safe Translating MyExp2SynBB.mod into /builddir/build/BUILD/netpyne-1.0.3.1/examples/PTcell/x86_64/MyExp2SynBB.c Thread Safe Translating IKsin.mod into /builddir/build/BUILD/netpyne-1.0.3.1/examples/PTcell/x86_64/IKsin.c Thread Safe -> NMODL ../mod/MyExp2SynNMDABB.mod -> NMODL ../mod/ar_traub.mod Translating ar_traub.mod into /builddir/build/BUILD/netpyne-1.0.3.1/examples/PTcell/x86_64/ar_traub.c Thread Safe -> NMODL ../mod/cadad.mod -> NMODL ../mod/cadyn.mod Translating cadyn.mod into /builddir/build/BUILD/netpyne-1.0.3.1/examples/PTcell/x86_64/cadyn.c Translating MyExp2SynNMDABB.mod into /builddir/build/BUILD/netpyne-1.0.3.1/examples/PTcell/x86_64/MyExp2SynNMDABB.c Thread Safe -> NMODL ../mod/cagk.mod INCLUDEing ghk.inc Warning: celsius undefined. (declared within VERBATIM?) Thread Safe Translating cagk.mod into /builddir/build/BUILD/netpyne-1.0.3.1/examples/PTcell/x86_64/cagk.c Thread Safe -> NMODL ../mod/cal_mh.mod Translating cadad.mod into /builddir/build/BUILD/netpyne-1.0.3.1/examples/PTcell/x86_64/cadad.c -> NMODL ../mod/cal_mig.mod Thread Safe Translating cal_mig.mod into /builddir/build/BUILD/netpyne-1.0.3.1/examples/PTcell/x86_64/cal_mig.c Thread Safe Warning: Default 2 of PARAMETER cao will be ignored and set by NEURON. Warning: Default 5e-05 of PARAMETER cai will be ignored and set by NEURON. Translating cal_mh.mod into /builddir/build/BUILD/netpyne-1.0.3.1/examples/PTcell/x86_64/cal_mh.c -> NMODL ../mod/can_mig.mod Thread Safe -> NMODL ../mod/canin.mod -> NMODL ../mod/cat_mig.mod Translating can_mig.mod into /builddir/build/BUILD/netpyne-1.0.3.1/examples/PTcell/x86_64/can_mig.c Thread Safe Warning: Default 2 of PARAMETER cao will be ignored and set by NEURON. Warning: Default 5e-05 of PARAMETER cai will be ignored and set by NEURON. -> NMODL ../mod/cat_traub.mod Translating cat_mig.mod into /builddir/build/BUILD/netpyne-1.0.3.1/examples/PTcell/x86_64/cat_mig.c Translating canin.mod into /builddir/build/BUILD/netpyne-1.0.3.1/examples/PTcell/x86_64/canin.c Thread Safe Warning: Default 2 of PARAMETER cao will be ignored and set by NEURON. Warning: Default 5e-05 of PARAMETER cai will be ignored and set by NEURON. Warning: Default 25 of PARAMETER celsius will be ignored and set by NEURON. Thread Safe -> NMODL ../mod/catcb.mod -> NMODL ../mod/gabab.mod Translating catcb.mod into /builddir/build/BUILD/netpyne-1.0.3.1/examples/PTcell/x86_64/catcb.c Notice: Assignment to the GLOBAL variable, "hinf", is not thread safe Notice: Assignment to the GLOBAL variable, "minf", is not thread safe -> NMODL ../mod/h_BS.mod -> NMODL ../mod/h_harnett.mod Translating cat_traub.mod into /builddir/build/BUILD/netpyne-1.0.3.1/examples/PTcell/x86_64/cat_traub.c Translating gabab.mod into /builddir/build/BUILD/netpyne-1.0.3.1/examples/PTcell/x86_64/gabab.c Thread Safe Notice: Assignment to the GLOBAL variable, "warn", is not thread safe -> NMODL ../mod/h_kole.mod Translating h_harnett.mod into /builddir/build/BUILD/netpyne-1.0.3.1/examples/PTcell/x86_64/h_harnett.c Translating h_BS.mod into /builddir/build/BUILD/netpyne-1.0.3.1/examples/PTcell/x86_64/h_BS.c Thread Safe -> NMODL ../mod/h_migliore.mod Thread Safe Warning: Default 34 of PARAMETER celsius will be ignored and set by NEURON. Translating h_kole.mod into /builddir/build/BUILD/netpyne-1.0.3.1/examples/PTcell/x86_64/h_kole.c -> NMODL ../mod/hin.mod Thread Safe Translating h_migliore.mod into /builddir/build/BUILD/netpyne-1.0.3.1/examples/PTcell/x86_64/h_migliore.c -> NMODL ../mod/ican_sidi.mod Thread Safe Translating hin.mod into /builddir/build/BUILD/netpyne-1.0.3.1/examples/PTcell/x86_64/hin.c -> NMODL ../mod/kBK.mod Thread Safe Warning: Default -10 of PARAMETER ehi will be ignored and set by NEURON. -> NMODL ../mod/kap_BS.mod Translating ican_sidi.mod into /builddir/build/BUILD/netpyne-1.0.3.1/examples/PTcell/x86_64/ican_sidi.c Translating kBK.mod into /builddir/build/BUILD/netpyne-1.0.3.1/examples/PTcell/x86_64/kBK.c Thread Safe Warning: Default 36 of PARAMETER celsius will be ignored and set by NEURON. Thread Safe -> NMODL ../mod/kapcb.mod -> NMODL ../mod/kapin.mod -> NMODL ../mod/kctin.mod Translating kap_BS.mod into /builddir/build/BUILD/netpyne-1.0.3.1/examples/PTcell/x86_64/kap_BS.c Translating kapcb.mod into /builddir/build/BUILD/netpyne-1.0.3.1/examples/PTcell/x86_64/kapcb.c Thread Safe Thread Safe Translating kctin.mod into /builddir/build/BUILD/netpyne-1.0.3.1/examples/PTcell/x86_64/kctin.c -> NMODL ../mod/kdmc_BS.mod Translating kapin.mod into /builddir/build/BUILD/netpyne-1.0.3.1/examples/PTcell/x86_64/kapin.c NEURON's CVode method ignores conservation Thread Safe Thread Safe -> NMODL ../mod/kdr_BS.mod -> NMODL ../mod/kdrin.mod Translating kdmc_BS.mod into /builddir/build/BUILD/netpyne-1.0.3.1/examples/PTcell/x86_64/kdmc_BS.c -> NMODL ../mod/nafx.mod Thread Safe Translating kdrin.mod into /builddir/build/BUILD/netpyne-1.0.3.1/examples/PTcell/x86_64/kdrin.c Translating kdr_BS.mod into /builddir/build/BUILD/netpyne-1.0.3.1/examples/PTcell/x86_64/kdr_BS.c Thread Safe Thread Safe -> NMODL ../mod/nap_sidi.mod -> NMODL ../mod/nax_BS.mod -> NMODL ../mod/savedist.mod Translating nafx.mod into /builddir/build/BUILD/netpyne-1.0.3.1/examples/PTcell/x86_64/nafx.c Thread Safe Warning: Default 55 of PARAMETER ena will be ignored and set by NEURON. Translating nap_sidi.mod into /builddir/build/BUILD/netpyne-1.0.3.1/examples/PTcell/x86_64/nap_sidi.c Thread Safe Translating savedist.mod into /builddir/build/BUILD/netpyne-1.0.3.1/examples/PTcell/x86_64/savedist.c Thread Safe -> NMODL ../mod/vecstim.mod -> Compiling HCN1.c Translating nax_BS.mod into /builddir/build/BUILD/netpyne-1.0.3.1/examples/PTcell/x86_64/nax_BS.c Thread Safe -> Compiling IC.c -> Compiling IKsin.c Translating vecstim.mod into /builddir/build/BUILD/netpyne-1.0.3.1/examples/PTcell/x86_64/vecstim.c Thread Safe -> Compiling MyExp2SynBB.c -> Compiling MyExp2SynNMDABB.c -> Compiling ar_traub.c -> Compiling cadad.c -> Compiling cadyn.c -> Compiling cagk.c -> Compiling cal_mh.c -> Compiling cal_mig.c -> Compiling can_mig.c -> Compiling canin.c -> Compiling cat_mig.c -> Compiling cat_traub.c -> Compiling catcb.c -> Compiling gabab.c -> Compiling h_BS.c -> Compiling h_harnett.c -> Compiling h_kole.c -> Compiling h_migliore.c -> Compiling hin.c -> Compiling ican_sidi.c -> Compiling kBK.c -> Compiling kap_BS.c -> Compiling kapcb.c -> Compiling kapin.c -> Compiling kctin.c -> Compiling kdmc_BS.c -> Compiling kdr_BS.c -> Compiling kdrin.c -> Compiling nafx.c -> Compiling nap_sidi.c -> Compiling nax_BS.c -> Compiling savedist.c -> Compiling vecstim.c => LINKING shared library ./libnrnmech.so => LINKING executable ./special LDFLAGS are: -lreadline -lcurses -lform -lpython3.11 -lX11 -lXext Successfully created x86_64/special + /usr/bin/python3 init.py -nogui Warning: no DISPLAY environment variable. --No graphics will be displayed. 0 Start time: 2023-04-05 07:57:00.284173 Creating network of 1 cell populations on 1 hosts... Number of cells on node 0: 1 Done; cell creation time = 0.07 s. Making connections... Distributing synapses based on subcellular connectivity rules... Number of connections on node 0: 0 Done; cell connection time = 0.00 s. Adding stims... Number of stims on node 0: 2 Done; cell stims creation time = 0.00 s. Recording 1 traces of 1 types on node 0 0.0s Running simulation using NEURON for 100.0 ms... 0.1s Done; run time = 4.13 s; real-time ratio: 0.02. Gathering data... Done; gather time = 0.03 s. Analyzing... Cells: 1 Connections: 1 (1.00 per cell) Spikes: 4 (40.00 Hz) Simulated time: 0.1 s; 1 workers Run time: 4.13 s PT5B : 40.000 Hz Saving output as ./PTcell_data.json ... Finished saving! Done; saving time = 0.08 s. + popd ~/build/BUILD/netpyne-1.0.3.1 + pushd examples/LFPrecording ~/build/BUILD/netpyne-1.0.3.1/examples/LFPrecording ~/build/BUILD/netpyne-1.0.3.1 + nrnivmodl mod /builddir/build/BUILD/netpyne-1.0.3.1/examples/LFPrecording Mod files: "mod/mod/IC.mod" "mod/mod/cadad.mod" "mod/mod/cagk.mod" "mod/mod/cal_mig.mod" "mod/mod/can_mig.mod" "mod/mod/cat_mig.mod" "mod/mod/h_kole.mod" "mod/mod/h_migliore.mod" "mod/mod/ican_sidi.mod" "mod/mod/kBK.mod" "mod/mod/kap_BS.mod" "mod/mod/kdmc_BS.mod" "mod/mod/kdr_BS.mod" "mod/mod/nax_BS.mod" "mod/mod/savedist.mod" Creating 'x86_64' directory for .o files. -> Compiling mod_func.cpp -> NMODL ../mod/cadad.mod -> NMODL ../mod/IC.mod Translating cadad.mod into /builddir/build/BUILD/netpyne-1.0.3.1/examples/LFPrecording/x86_64/cadad.c Thread Safe -> NMODL ../mod/cagk.mod -> NMODL ../mod/cal_mig.mod Translating IC.mod into /builddir/build/BUILD/netpyne-1.0.3.1/examples/LFPrecording/x86_64/IC.c Thread Safe Translating cal_mig.mod into /builddir/build/BUILD/netpyne-1.0.3.1/examples/LFPrecording/x86_64/cal_mig.c Thread Safe Warning: Default 2 of PARAMETER cao will be ignored and set by NEURON. Warning: Default 5e-05 of PARAMETER cai will be ignored and set by NEURON. -> NMODL ../mod/can_mig.mod Translating cagk.mod into /builddir/build/BUILD/netpyne-1.0.3.1/examples/LFPrecording/x86_64/cagk.c -> NMODL ../mod/cat_mig.mod Thread Safe Translating cat_mig.mod into /builddir/build/BUILD/netpyne-1.0.3.1/examples/LFPrecording/x86_64/cat_mig.c Thread Safe Warning: Default 2 of PARAMETER cao will be ignored and set by NEURON. Warning: Default 5e-05 of PARAMETER cai will be ignored and set by NEURON. Warning: Default 25 of PARAMETER celsius will be ignored and set by NEURON. Translating can_mig.mod into /builddir/build/BUILD/netpyne-1.0.3.1/examples/LFPrecording/x86_64/can_mig.c -> NMODL ../mod/h_kole.mod Thread Safe Warning: Default 2 of PARAMETER cao will be ignored and set by NEURON. Warning: Default 5e-05 of PARAMETER cai will be ignored and set by NEURON. -> NMODL ../mod/h_migliore.mod Translating h_migliore.mod into /builddir/build/BUILD/netpyne-1.0.3.1/examples/LFPrecording/x86_64/h_migliore.c Thread Safe Translating h_kole.mod into /builddir/build/BUILD/netpyne-1.0.3.1/examples/LFPrecording/x86_64/h_kole.c -> NMODL ../mod/ican_sidi.mod Thread Safe -> NMODL ../mod/kBK.mod -> NMODL ../mod/kap_BS.mod Translating ican_sidi.mod into /builddir/build/BUILD/netpyne-1.0.3.1/examples/LFPrecording/x86_64/ican_sidi.c Translating kBK.mod into /builddir/build/BUILD/netpyne-1.0.3.1/examples/LFPrecording/x86_64/kBK.c Thread Safe Warning: Default 36 of PARAMETER celsius will be ignored and set by NEURON. -> NMODL ../mod/kdmc_BS.mod Thread Safe Translating kap_BS.mod into /builddir/build/BUILD/netpyne-1.0.3.1/examples/LFPrecording/x86_64/kap_BS.c -> NMODL ../mod/kdr_BS.mod Thread Safe -> NMODL ../mod/nax_BS.mod -> NMODL ../mod/savedist.mod Translating kdmc_BS.mod into /builddir/build/BUILD/netpyne-1.0.3.1/examples/LFPrecording/x86_64/kdmc_BS.c Translating nax_BS.mod into /builddir/build/BUILD/netpyne-1.0.3.1/examples/LFPrecording/x86_64/nax_BS.c Thread Safe Thread Safe -> Compiling IC.c Translating kdr_BS.mod into /builddir/build/BUILD/netpyne-1.0.3.1/examples/LFPrecording/x86_64/kdr_BS.c Thread Safe -> Compiling cadad.c Translating savedist.mod into /builddir/build/BUILD/netpyne-1.0.3.1/examples/LFPrecording/x86_64/savedist.c Thread Safe -> Compiling cagk.c -> Compiling cal_mig.c -> Compiling can_mig.c -> Compiling cat_mig.c -> Compiling h_kole.c -> Compiling h_migliore.c -> Compiling ican_sidi.c -> Compiling kBK.c -> Compiling kap_BS.c -> Compiling kdmc_BS.c -> Compiling kdr_BS.c -> Compiling nax_BS.c -> Compiling savedist.c => LINKING shared library ./libnrnmech.so => LINKING executable ./special LDFLAGS are: -lreadline -lcurses -lform -lpython3.11 -lX11 -lXext Successfully created x86_64/special + /usr/bin/python3 cell_lfp.py -nogui Warning: no DISPLAY environment variable. --No graphics will be displayed. Start time: 2023-04-05 07:57:06.810277 Creating network of 1 cell populations on 1 hosts... Number of cells on node 0: 1 Done; cell creation time = 0.07 s. Making connections... Number of connections on node 0: 0 Done; cell connection time = 0.00 s. Adding stims... Number of stims on node 0: 1 Done; cell stims creation time = 0.00 s. Recording 2 traces of 2 types on node 0 Running simulation using NEURON for 50.0 ms... Done; run time = 0.63 s; real-time ratio: 0.08. Gathering data... Done; gather time = 0.03 s. Analyzing... Cells: 1 Connections: 1 (1.00 per cell) Spikes: 1 (20.00 Hz) Simulated time: 0.1 s; 1 workers Run time: 0.63 s Warning: data won't be saved. No output format specified (consider sim.cfg.savePickle, sim.cfg.saveJson etc.) + popd ~/build/BUILD/netpyne-1.0.3.1 + pushd examples/saving ~/build/BUILD/netpyne-1.0.3.1/examples/saving ~/build/BUILD/netpyne-1.0.3.1 + /usr/bin/python3 init.py -nogui Warning: no DISPLAY environment variable. --No graphics will be displayed. Start time: 2023-04-05 07:57:08.698881 Creating network of 3 cell populations on 1 hosts... Number of cells on node 0: 140 Done; cell creation time = 0.01 s. Making connections... Number of connections on node 0: 1458 Done; cell connection time = 0.23 s. Adding stims... Number of stims on node 0: 80 Done; cell stims creation time = 0.01 s. Recording 141 traces of 2 types on node 0 Running simulation using NEURON for 1000.0 ms... Done; run time = 2.62 s; real-time ratio: 0.38. Gathering data... Done; gather time = 0.03 s. Analyzing... Cells: 140 Connections: 1538 (10.99 per cell) Spikes: 3699 (26.42 Hz) Simulated time: 1.0 s; 1 workers Run time: 2.62 s Warning: data won't be saved. No output format specified (consider sim.cfg.savePickle, sim.cfg.saveJson etc.) Saving output as out_netParams_data.json ... Finished saving! Done; saving time = 0.00 s. Saving output as out_netInstance_data.json ... Finished saving! Done; saving time = 0.03 s. Saving output as out_netParams_netInstance_data.json ... Finished saving! Done; saving time = 0.03 s. Saving output as out_simConfig_data.json ... Finished saving! Done; saving time = 0.00 s. Saving output as out_simData_data.json ... Finished saving! Done; saving time = 0.03 s. Gathering data... Done; gather time = 0.02 s. Analyzing... Cells: 140 Connections: 1538 (10.99 per cell) Spikes: 3699 (26.42 Hz) Simulated time: 1.0 s; 1 workers Run time: 2.62 s Saving output as out_netInstanceCompact_data.json ... Finished saving! Done; saving time = 0.02 s. + popd ~/build/BUILD/netpyne-1.0.3.1 + pushd examples/rxd_buffering ~/build/BUILD/netpyne-1.0.3.1/examples/rxd_buffering ~/build/BUILD/netpyne-1.0.3.1 + /usr/bin/python3 buffering.py -nogui Warning: no DISPLAY environment variable. --No graphics will be displayed. Start time: 2023-04-05 07:57:12.882043 Creating network of 1 cell populations on 1 hosts... Number of cells on node 0: 1 Done; cell creation time = 0.00 s. Making connections... Number of connections on node 0: 0 Done; cell connection time = 0.00 s. Number of stims on node 0: 0 Done; cell stims creation time = 0.00 s. Adding RxD... Created Region cyt Created Species ca Created Species buf Created Species cabuf Created Reaction buffering Created Rate degradation Done; RxD setup time = 0.00 s. Recording 3 traces of 3 types on node 0 Running simulation using NEURON for 500.0 ms... Done; run time = 0.13 s; real-time ratio: 3.74. Gathering data... Done; gather time = 0.00 s. Analyzing... Cells: 1 Connections: 0 (0.00 per cell) Spikes: 0 (0.00 Hz) Simulated time: 0.5 s; 1 workers Run time: 0.13 s Warning: data won't be saved. No output format specified (consider sim.cfg.savePickle, sim.cfg.saveJson etc.) + popd ~/build/BUILD/netpyne-1.0.3.1 + pushd examples/rxd_net ~/build/BUILD/netpyne-1.0.3.1/examples/rxd_net ~/build/BUILD/netpyne-1.0.3.1 + nrnivmodl mod /builddir/build/BUILD/netpyne-1.0.3.1/examples/rxd_net Mod files: "mod/mod/HCN1.mod" "mod/mod/IC.mod" "mod/mod/IKsin.mod" "mod/mod/ar_traub.mod" "mod/mod/cadad.mod" "mod/mod/cadyn.mod" "mod/mod/cagk.mod" "mod/mod/cal_mh.mod" "mod/mod/cal_mig.mod" "mod/mod/can_mig.mod" "mod/mod/canin.mod" "mod/mod/cat_mig.mod" "mod/mod/cat_traub.mod" "mod/mod/catcb.mod" "mod/mod/gabab.mod" "mod/mod/h_BS.mod" "mod/mod/h_harnett.mod" "mod/mod/h_kole.mod" "mod/mod/h_migliore.mod" "mod/mod/hin.mod" "mod/mod/ican_sidi.mod" "mod/mod/kBK.mod" "mod/mod/kap_BS.mod" "mod/mod/kapcb.mod" "mod/mod/kapin.mod" "mod/mod/kctin.mod" "mod/mod/kdmc_BS.mod" "mod/mod/kdr_BS.mod" "mod/mod/kdrin.mod" "mod/mod/nafx.mod" "mod/mod/nap_sidi.mod" "mod/mod/nax_BS.mod" "mod/mod/savedist.mod" "mod/mod/vecstim.mod" Creating 'x86_64' directory for .o files. -> Compiling mod_func.cpp -> NMODL ../mod/IC.mod -> NMODL ../mod/HCN1.mod Translating HCN1.mod into /builddir/build/BUILD/netpyne-1.0.3.1/examples/rxd_net/x86_64/HCN1.c Thread Safe Translating IC.mod into /builddir/build/BUILD/netpyne-1.0.3.1/examples/rxd_net/x86_64/IC.c -> NMODL ../mod/IKsin.mod Thread Safe -> NMODL ../mod/ar_traub.mod -> NMODL ../mod/cadad.mod Translating cadad.mod into /builddir/build/BUILD/netpyne-1.0.3.1/examples/rxd_net/x86_64/cadad.c Thread Safe -> NMODL ../mod/cadyn.mod Translating IKsin.mod into /builddir/build/BUILD/netpyne-1.0.3.1/examples/rxd_net/x86_64/IKsin.c Translating ar_traub.mod into /builddir/build/BUILD/netpyne-1.0.3.1/examples/rxd_net/x86_64/ar_traub.c Thread Safe Thread Safe -> NMODL ../mod/cagk.mod -> NMODL ../mod/cal_mh.mod Translating cal_mh.mod into /builddir/build/BUILD/netpyne-1.0.3.1/examples/rxd_net/x86_64/cal_mh.c Thread Safe Translating cadyn.mod into /builddir/build/BUILD/netpyne-1.0.3.1/examples/rxd_net/x86_64/cadyn.c Thread Safe -> NMODL ../mod/cal_mig.mod -> NMODL ../mod/can_mig.mod Translating cagk.mod into /builddir/build/BUILD/netpyne-1.0.3.1/examples/rxd_net/x86_64/cagk.c Translating can_mig.mod into /builddir/build/BUILD/netpyne-1.0.3.1/examples/rxd_net/x86_64/can_mig.c Thread Safe Thread Safe Warning: Default 2 of PARAMETER cao will be ignored and set by NEURON. Warning: Default 5e-05 of PARAMETER cai will be ignored and set by NEURON. Translating cal_mig.mod into /builddir/build/BUILD/netpyne-1.0.3.1/examples/rxd_net/x86_64/cal_mig.c -> NMODL ../mod/canin.mod Thread Safe Warning: Default 2 of PARAMETER cao will be ignored and set by NEURON. Warning: Default 5e-05 of PARAMETER cai will be ignored and set by NEURON. -> NMODL ../mod/cat_mig.mod -> NMODL ../mod/cat_traub.mod Translating canin.mod into /builddir/build/BUILD/netpyne-1.0.3.1/examples/rxd_net/x86_64/canin.c Thread Safe -> NMODL ../mod/catcb.mod Translating cat_mig.mod into /builddir/build/BUILD/netpyne-1.0.3.1/examples/rxd_net/x86_64/cat_mig.c Translating cat_traub.mod into /builddir/build/BUILD/netpyne-1.0.3.1/examples/rxd_net/x86_64/cat_traub.c Thread Safe Thread Safe Warning: Default 2 of PARAMETER cao will be ignored and set by NEURON. Warning: Default 5e-05 of PARAMETER cai will be ignored and set by NEURON. Warning: Default 25 of PARAMETER celsius will be ignored and set by NEURON. -> NMODL ../mod/gabab.mod Translating catcb.mod into /builddir/build/BUILD/netpyne-1.0.3.1/examples/rxd_net/x86_64/catcb.c Translating gabab.mod into /builddir/build/BUILD/netpyne-1.0.3.1/examples/rxd_net/x86_64/gabab.c Notice: Assignment to the GLOBAL variable, "hinf", is not thread safe Notice: Assignment to the GLOBAL variable, "minf", is not thread safe Notice: Assignment to the GLOBAL variable, "warn", is not thread safe -> NMODL ../mod/h_BS.mod -> NMODL ../mod/h_kole.mod -> NMODL ../mod/h_harnett.mod Translating h_BS.mod into /builddir/build/BUILD/netpyne-1.0.3.1/examples/rxd_net/x86_64/h_BS.c Translating h_harnett.mod into /builddir/build/BUILD/netpyne-1.0.3.1/examples/rxd_net/x86_64/h_harnett.c Thread Safe Warning: Default 34 of PARAMETER celsius will be ignored and set by NEURON. Thread Safe -> NMODL ../mod/h_migliore.mod Translating h_kole.mod into /builddir/build/BUILD/netpyne-1.0.3.1/examples/rxd_net/x86_64/h_kole.c -> NMODL ../mod/hin.mod Thread Safe Translating h_migliore.mod into /builddir/build/BUILD/netpyne-1.0.3.1/examples/rxd_net/x86_64/h_migliore.c Thread Safe -> NMODL ../mod/ican_sidi.mod -> NMODL ../mod/kBK.mod Translating hin.mod into /builddir/build/BUILD/netpyne-1.0.3.1/examples/rxd_net/x86_64/hin.c Thread Safe Warning: Default -10 of PARAMETER ehi will be ignored and set by NEURON. Translating ican_sidi.mod into /builddir/build/BUILD/netpyne-1.0.3.1/examples/rxd_net/x86_64/ican_sidi.c Translating kBK.mod into /builddir/build/BUILD/netpyne-1.0.3.1/examples/rxd_net/x86_64/kBK.c Thread Safe Warning: Default 36 of PARAMETER celsius will be ignored and set by NEURON. -> NMODL ../mod/kap_BS.mod -> NMODL ../mod/kapcb.mod Thread Safe Translating kap_BS.mod into /builddir/build/BUILD/netpyne-1.0.3.1/examples/rxd_net/x86_64/kap_BS.c -> NMODL ../mod/kapin.mod Thread Safe -> NMODL ../mod/kctin.mod Translating kapcb.mod into /builddir/build/BUILD/netpyne-1.0.3.1/examples/rxd_net/x86_64/kapcb.c Translating kapin.mod into /builddir/build/BUILD/netpyne-1.0.3.1/examples/rxd_net/x86_64/kapin.c Thread Safe Thread Safe Translating kctin.mod into /builddir/build/BUILD/netpyne-1.0.3.1/examples/rxd_net/x86_64/kctin.c -> NMODL ../mod/kdmc_BS.mod -> NMODL ../mod/kdr_BS.mod NEURON's CVode method ignores conservation Thread Safe Translating kdmc_BS.mod into /builddir/build/BUILD/netpyne-1.0.3.1/examples/rxd_net/x86_64/kdmc_BS.c -> NMODL ../mod/kdrin.mod Thread Safe -> NMODL ../mod/nafx.mod Translating kdr_BS.mod into /builddir/build/BUILD/netpyne-1.0.3.1/examples/rxd_net/x86_64/kdr_BS.c Translating kdrin.mod into /builddir/build/BUILD/netpyne-1.0.3.1/examples/rxd_net/x86_64/kdrin.c Thread Safe Thread Safe -> NMODL ../mod/nap_sidi.mod -> NMODL ../mod/nax_BS.mod Translating nafx.mod into /builddir/build/BUILD/netpyne-1.0.3.1/examples/rxd_net/x86_64/nafx.c Translating nap_sidi.mod into /builddir/build/BUILD/netpyne-1.0.3.1/examples/rxd_net/x86_64/nap_sidi.c Thread Safe Warning: Default 55 of PARAMETER ena will be ignored and set by NEURON. Thread Safe -> NMODL ../mod/savedist.mod -> NMODL ../mod/vecstim.mod Translating nax_BS.mod into /builddir/build/BUILD/netpyne-1.0.3.1/examples/rxd_net/x86_64/nax_BS.c Thread Safe Translating savedist.mod into /builddir/build/BUILD/netpyne-1.0.3.1/examples/rxd_net/x86_64/savedist.c Thread Safe -> Compiling HCN1.c -> Compiling IC.c -> Compiling IKsin.c Translating vecstim.mod into /builddir/build/BUILD/netpyne-1.0.3.1/examples/rxd_net/x86_64/vecstim.c Thread Safe -> Compiling ar_traub.c -> Compiling cadad.c -> Compiling cadyn.c -> Compiling cagk.c -> Compiling cal_mh.c -> Compiling cal_mig.c -> Compiling can_mig.c -> Compiling canin.c -> Compiling cat_mig.c -> Compiling cat_traub.c -> Compiling catcb.c -> Compiling gabab.c -> Compiling h_BS.c -> Compiling h_harnett.c -> Compiling h_kole.c -> Compiling h_migliore.c -> Compiling hin.c -> Compiling ican_sidi.c -> Compiling kBK.c -> Compiling kap_BS.c -> Compiling kapcb.c -> Compiling kapin.c -> Compiling kctin.c -> Compiling kdmc_BS.c -> Compiling kdr_BS.c -> Compiling kdrin.c -> Compiling nafx.c -> Compiling nap_sidi.c -> Compiling nax_BS.c -> Compiling savedist.c -> Compiling vecstim.c => LINKING shared library ./libnrnmech.so => LINKING executable ./special LDFLAGS are: -lreadline -lcurses -lform -lpython3.11 -lX11 -lXext Successfully created x86_64/special + /usr/bin/python3 init.py -nogui Warning: no DISPLAY environment variable. --No graphics will be displayed. Start time: 2023-04-05 07:57:15.982595 Creating network of 6 cell populations on 1 hosts... Number of cells on node 0: 60 Done; cell creation time = 0.11 s. Making connections... Number of connections on node 0: 309 Done; cell connection time = 0.06 s. Adding stims... Number of stims on node 0: 60 Done; cell stims creation time = 0.01 s. Adding RxD... Created Region cyt Created Region er Created Region cyt_er_membrane Created Extracellular Region ecs Created Species ca Created Species ip3 Created State ip3r_gate_state Created MultiCompartmentReaction serca Created MultiCompartmentReaction leak Created MultiCompartmentReaction ip3r Created Rate ip3rg Done; RxD setup time = 0.01 s. Recording 4 traces of 4 types on node 0 Running simulation using NEURON for 1000.0 ms... Done; run time = 53.17 s; real-time ratio: 0.02. Gathering data... Done; gather time = 0.05 s. Analyzing... Cells: 60 Connections: 369 (6.15 per cell) Spikes: 937 (15.62 Hz) Simulated time: 1.0 s; 1 workers Run time: 53.17 s Warning: data won't be saved. No output format specified (consider sim.cfg.savePickle, sim.cfg.saveJson etc.) + popd ~/build/BUILD/netpyne-1.0.3.1 + RPM_EC=0 ++ jobs -p + exit 0 Processing files: python3-netpyne-1.0.3.1-2.fc39.noarch Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.hw5mUZ + umask 022 + cd /builddir/build/BUILD + cd netpyne-1.0.3.1 + DOCDIR=/builddir/build/BUILDROOT/python-netpyne-1.0.3.1-2.fc39.x86_64/usr/share/doc/python3-netpyne + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/python-netpyne-1.0.3.1-2.fc39.x86_64/usr/share/doc/python3-netpyne + cp -pr README.md /builddir/build/BUILDROOT/python-netpyne-1.0.3.1-2.fc39.x86_64/usr/share/doc/python3-netpyne + cp -pr CHANGES.md /builddir/build/BUILDROOT/python-netpyne-1.0.3.1-2.fc39.x86_64/usr/share/doc/python3-netpyne + RPM_EC=0 ++ jobs -p + exit 0 Provides: python-netpyne = 1.0.3.1-2.fc39 python3-netpyne = 1.0.3.1-2.fc39 python3.11-netpyne = 1.0.3.1-2.fc39 python3.11dist(netpyne) = 1.0.3.1 python3dist(netpyne) = 1.0.3.1 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: python(abi) = 3.11 python3.11dist(bokeh) python3.11dist(future) python3.11dist(lfpykit) python3.11dist(matplotlib) python3.11dist(matplotlib-scalebar) python3.11dist(numpy) python3.11dist(pandas) python3.11dist(schema) python3.11dist(scipy) Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/python-netpyne-1.0.3.1-2.fc39.x86_64 Wrote: /builddir/build/SRPMS/python-netpyne-1.0.3.1-2.fc39.src.rpm Wrote: /builddir/build/RPMS/python3-netpyne-1.0.3.1-2.fc39.noarch.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.h2mO7A + umask 022 + cd /builddir/build/BUILD + cd netpyne-1.0.3.1 + /usr/bin/rm -rf /builddir/build/BUILDROOT/python-netpyne-1.0.3.1-2.fc39.x86_64 + RPM_EC=0 ++ jobs -p + exit 0 Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.cKGCqO + umask 022 + cd /builddir/build/BUILD + rm -rf netpyne-1.0.3.1 netpyne-1.0.3.1.gemspec + RPM_EC=0 ++ jobs -p + exit 0 Child return code was: 0