Warning: Permanently added '52.23.207.4' (ED25519) to the list of known hosts.
Running: /usr/bin/copr-rpmbuild --verbose --drop-resultdir --build-id 5270152 --chroot fedora-rawhide-x86_64 --detached
Version: 0.62
PID: 6396
Logging PID: 6397
Task:
{'appstream': True,
'background': True,
'build_id': 5270152,
'buildroot_pkgs': [],
'chroot': 'fedora-rawhide-x86_64',
'enable_net': False,
'fedora_review': False,
'git_hash': '4c1cdb59b67848abaf60132517ff8c22b54a969a',
'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/thrnciar/python-packaging-control/pymol',
'isolation': 'default',
'memory_reqs': 2048,
'package_name': 'pymol',
'package_version': '2.5.0-6',
'project_dirname': 'python-packaging-control',
'project_name': 'python-packaging-control',
'project_owner': 'thrnciar',
'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/thrnciar/python-packaging-control/fedora-rawhide-x86_64/',
'id': 'copr_base',
'name': 'Copr repository'}],
'sandbox': 'thrnciar/python-packaging-control--thrnciar',
'source_json': {},
'source_type': None,
'submitter': 'thrnciar',
'tags': [],
'task_id': '5270152-fedora-rawhide-x86_64',
'timeout': 18000,
'uses_devel_repo': False,
'with_opts': [],
'without_opts': []}
Running: git clone https://copr-dist-git.fedorainfracloud.org/git/thrnciar/python-packaging-control/pymol /var/lib/copr-rpmbuild/workspace/workdir-6km37st1/pymol --depth 500 --no-single-branch --recursive
cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/thrnciar/python-packaging-control/pymol', '/var/lib/copr-rpmbuild/workspace/workdir-6km37st1/pymol', '--depth', '500', '--no-single-branch', '--recursive']
cwd: .
rc: 0
stdout:
stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-6km37st1/pymol'...
Running: git checkout 4c1cdb59b67848abaf60132517ff8c22b54a969a
cmd: ['git', 'checkout', '4c1cdb59b67848abaf60132517ff8c22b54a969a']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-6km37st1/pymol
rc: 0
stdout:
stderr: Note: switching to '4c1cdb59b67848abaf60132517ff8c22b54a969a'.
You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by switching back to a branch.
If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -c with the switch command. Example:
git switch -c <new-branch-name>
Or undo this operation with:
git switch -
Turn off this advice by setting config variable advice.detachedHead to false
HEAD is now at 4c1cdb5 automatic import of pymol
Running: copr-distgit-client sources
/usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated
cmd: ['copr-distgit-client', 'sources']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-6km37st1/pymol
rc: 0
stdout:
stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD
INFO: Reading stdout from command: git rev-parse HEAD
INFO: Reading sources specification file: sources
INFO: Downloading pymol-open-source-2.5.0.tar.gz
INFO: Calling: curl -H Pragma: -o pymol-open-source-2.5.0.tar.gz --location --remote-time --show-error --fail https://copr-dist-git.fedorainfracloud.org/repo/pkgs/thrnciar/python-packaging-control/pymol/pymol-open-source-2.5.0.tar.gz/md5/1c2d43789dd5580958fd75672ecfd8e7/pymol-open-source-2.5.0.tar.gz
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
100 9.9M 100 9.9M 0 0 3980k 0 0:00:02 0:00:02 --:--:-- 3981k
INFO: Reading stdout from command: md5sum pymol-open-source-2.5.0.tar.gz
INFO: Downloading pymol.png
INFO: Calling: curl -H Pragma: -o pymol.png --location --remote-time --show-error --fail https://copr-dist-git.fedorainfracloud.org/repo/pkgs/thrnciar/python-packaging-control/pymol/pymol.png/md5/3bbd85dbd40f588f505ad988b6df2933/pymol.png
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
100 19466 100 19466 0 0 127k 0 --:--:-- --:--:-- --:--:-- 126k
INFO: Reading stdout from command: md5sum pymol.png
Running (timeout=18000): unbuffer mock --buildsrpm --spec /var/lib/copr-rpmbuild/workspace/workdir-6km37st1/pymol/pymol.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-6km37st1/pymol --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1674292270.246865 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
INFO: mock.py version 3.5 starting (python version = 3.11.0, NVR = mock-3.5-1.fc37)...
Start(bootstrap): init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish(bootstrap): init plugins
Start: init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish: init plugins
INFO: Signal handler active
Start: run
INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-6km37st1/pymol/pymol.spec) Config(fedora-rawhide-x86_64)
Start: clean chroot
Finish: clean chroot
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1674292270.246865/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
INFO: enabled HW Info plugin
Mock Version: 3.5
INFO: Mock Version: 3.5
Start(bootstrap): dnf install
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Updating Subscription Management repositories.
Unable to read consumer identity
This system is not registered with an entitlement server. You can use subscription-manager to register.
Copr repository 95 MB/s | 10 MB 00:00
fedora 44 MB/s | 65 MB 00:01
Last metadata expiration check: 0:00:02 ago on Sat Jan 21 09:11:16 2023.
Dependencies resolved.
================================================================================
Package Arch Version Repo Size
================================================================================
Installing:
dnf noarch 4.14.0-2.fc38 copr_base 467 k
dnf-plugins-core noarch 4.3.1-2.fc38 copr_base 34 k
Installing dependencies:
alternatives x86_64 1.21-1.fc38 fedora 38 k
audit-libs x86_64 3.0.9-3.fc38 copr_base 117 k
basesystem noarch 11-14.fc37 fedora 7.0 k
bash x86_64 5.2.15-1.fc38 fedora 1.8 M
bzip2-libs x86_64 1.0.8-12.fc37 fedora 41 k
ca-certificates noarch 2022.2.54-5.fc37 fedora 829 k
coreutils x86_64 9.1-10.fc38 fedora 1.1 M
coreutils-common x86_64 9.1-10.fc38 fedora 2.0 M
crypto-policies noarch 20221215-2.gita4c31a3.fc38 copr_base 64 k
curl x86_64 7.87.0-3.fc38 copr_base 347 k
cyrus-sasl-lib x86_64 2.1.28-8.fc38 fedora 792 k
dbus-libs x86_64 1:1.14.4-1.fc38 fedora 156 k
dnf-data noarch 4.14.0-2.fc38 copr_base 41 k
elfutils-default-yama-scope noarch 0.188-3.fc38 fedora 15 k
elfutils-libelf x86_64 0.188-3.fc38 fedora 196 k
elfutils-libs x86_64 0.188-3.fc38 fedora 257 k
expat x86_64 2.5.0-1.fc38 fedora 110 k
fedora-gpg-keys noarch 38-0.3 fedora 125 k
fedora-release noarch 38-0.15 fedora 11 k
fedora-release-common noarch 38-0.15 fedora 21 k
fedora-release-identity-basic
noarch 38-0.15 fedora 12 k
fedora-repos noarch 38-0.3 fedora 10 k
fedora-repos-rawhide noarch 38-0.3 fedora 9.7 k
file-libs x86_64 5.42-5.fc38 copr_base 676 k
filesystem x86_64 3.18-2.fc37 fedora 1.1 M
findutils x86_64 1:4.9.0-2.fc37 fedora 492 k
gawk x86_64 5.1.1-4.fc37 fedora 1.0 M
gdbm-libs x86_64 1:1.23-2.fc37 fedora 56 k
glib2 x86_64 2.74.1-3.fc38 copr_base 2.7 M
glibc x86_64 2.36.9000-23.fc38 copr_base 2.1 M
glibc-common x86_64 2.36.9000-23.fc38 copr_base 307 k
glibc-minimal-langpack x86_64 2.36.9000-23.fc38 copr_base 34 k
gmp x86_64 1:6.2.1-3.fc37 fedora 315 k
gnupg2 x86_64 2.4.0-1.fc38 fedora 2.6 M
gnutls x86_64 3.7.8-11.fc38 copr_base 1.1 M
gpgme x86_64 1.17.1-3.fc38 fedora 210 k
grep x86_64 3.8-2.fc38 fedora 292 k
ima-evm-utils x86_64 1.4-6.fc37 fedora 63 k
json-c x86_64 0.16-3.fc38 fedora 41 k
keyutils-libs x86_64 1.6.1-5.fc37 fedora 31 k
krb5-libs x86_64 1.20.1-7.fc38 copr_base 722 k
libacl x86_64 2.3.1-4.fc37 fedora 23 k
libarchive x86_64 3.6.1-3.fc38 fedora 397 k
libassuan x86_64 2.5.5-5.fc37 fedora 67 k
libattr x86_64 2.5.1-5.fc37 fedora 18 k
libb2 x86_64 0.98.1-7.fc37 fedora 25 k
libblkid x86_64 2.38.1-3.fc38 fedora 106 k
libbrotli x86_64 1.0.9-11.fc38 copr_base 317 k
libcap x86_64 2.48-5.fc37 fedora 67 k
libcap-ng x86_64 0.8.3-5.fc38 copr_base 33 k
libcom_err x86_64 1.46.5-3.fc37 fedora 25 k
libcomps x86_64 0.1.18-5.fc38 copr_base 77 k
libcurl x86_64 7.87.0-3.fc38 copr_base 304 k
libdnf x86_64 0.68.0-2.fc38 copr_base 653 k
libevent x86_64 2.1.12-8.fc38 copr_base 258 k
libffi x86_64 3.4.4-1.fc38 fedora 38 k
libfsverity x86_64 1.4-8.fc37 fedora 19 k
libgcc x86_64 13.0.1-0.1.fc38 fedora 93 k
libgcrypt x86_64 1.10.1-6.fc38 fedora 511 k
libgomp x86_64 13.0.1-0.1.fc38 fedora 300 k
libgpg-error x86_64 1.46-1.fc38 fedora 227 k
libidn2 x86_64 2.3.4-1.fc38 fedora 160 k
libksba x86_64 1.6.3-1.fc38 fedora 158 k
libmodulemd x86_64 2.14.0-5.fc38 copr_base 234 k
libmount x86_64 2.38.1-3.fc38 fedora 135 k
libnghttp2 x86_64 1.51.0-2.fc38 copr_base 76 k
libnsl2 x86_64 2.0.0-4.fc37 fedora 30 k
libpsl x86_64 0.21.2-2.fc38 copr_base 66 k
librepo x86_64 1.15.1-2.fc38 copr_base 97 k
libreport-filesystem noarch 2.17.6-2.fc38 copr_base 14 k
libselinux x86_64 3.5-0.rc1.1.fc38.1 fedora 86 k
libsemanage x86_64 3.5-0.rc1.1.fc38 fedora 119 k
libsepol x86_64 3.5-0.rc1.1.fc38 fedora 322 k
libsigsegv x86_64 2.14-3.fc37 fedora 27 k
libsmartcols x86_64 2.38.1-3.fc38 fedora 64 k
libsolv x86_64 0.7.22-4.fc38 copr_base 412 k
libssh x86_64 0.10.4-2.fc38 fedora 209 k
libssh-config noarch 0.10.4-2.fc38 fedora 8.8 k
libstdc++ x86_64 13.0.1-0.1.fc38 fedora 844 k
libtasn1 x86_64 4.19.0-1.fc38 fedora 75 k
libtirpc x86_64 1.3.3-0.fc37 fedora 93 k
libunistring x86_64 1.0-2.fc37 fedora 549 k
libuuid x86_64 2.38.1-3.fc38 fedora 27 k
libverto x86_64 0.3.2-4.fc37 fedora 21 k
libxcrypt x86_64 4.4.33-5.fc38 fedora 120 k
libxml2 x86_64 2.10.3-3.fc38 copr_base 701 k
libyaml x86_64 0.2.5-8.fc37 fedora 60 k
libzstd x86_64 1.5.2-3.fc37 fedora 294 k
lua-libs x86_64 5.4.4-7.fc38 fedora 131 k
lz4-libs x86_64 1.9.4-1.fc38 fedora 67 k
mpdecimal x86_64 2.5.1-4.fc37 fedora 102 k
mpfr x86_64 4.1.1-2.fc38 fedora 598 k
ncurses-base noarch 6.4-2.20230114.fc38 fedora 87 k
ncurses-libs x86_64 6.4-2.20230114.fc38 fedora 333 k
nettle x86_64 3.8-2.fc37 fedora 414 k
npth x86_64 1.6-10.fc38 fedora 24 k
openldap x86_64 2.6.3-1.fc38 fedora 254 k
openssl-libs x86_64 1:3.0.7-3.fc38 fedora 2.1 M
p11-kit x86_64 0.24.1-5.fc38 fedora 376 k
p11-kit-trust x86_64 0.24.1-5.fc38 fedora 137 k
pcre2 x86_64 10.42-1.fc38 fedora 234 k
pcre2-syntax noarch 10.42-1.fc38 fedora 144 k
popt x86_64 1.19-1.fc38 fedora 66 k
publicsuffix-list-dafsa noarch 20221208-1.fc38 fedora 59 k
python-pip-wheel noarch 22.3.1-1.fc38 fedora 1.4 M
python-setuptools-wheel noarch 65.5.1-1.fc38 fedora 715 k
python3 x86_64 3.11.1-3.fc38 fedora 27 k
python3-dateutil noarch 1:2.8.2-4.fc37 fedora 361 k
python3-dbus x86_64 1.3.2-2.fc38 copr_base 147 k
python3-distro noarch 1.8.0-1.fc38 fedora 49 k
python3-dnf noarch 4.14.0-2.fc38 copr_base 564 k
python3-dnf-plugins-core noarch 4.3.1-2.fc38 copr_base 263 k
python3-gpg x86_64 1.17.1-3.fc38 fedora 296 k
python3-hawkey x86_64 0.68.0-2.fc38 copr_base 108 k
python3-libcomps x86_64 0.1.18-5.fc38 copr_base 48 k
python3-libdnf x86_64 0.68.0-2.fc38 copr_base 817 k
python3-libs x86_64 3.11.1-3.fc38 fedora 9.6 M
python3-rpm x86_64 4.18.0-9.fc38 fedora 73 k
python3-six noarch 1.16.0-8.fc37 fedora 42 k
readline x86_64 8.2-2.fc38 fedora 211 k
rpm x86_64 4.18.0-9.fc38 fedora 569 k
rpm-build-libs x86_64 4.18.0-9.fc38 fedora 95 k
rpm-libs x86_64 4.18.0-9.fc38 fedora 312 k
rpm-sequoia x86_64 1.2.0-1.fc38 fedora 829 k
rpm-sign-libs x86_64 4.18.0-9.fc38 fedora 27 k
sed x86_64 4.8-11.fc37 fedora 306 k
setup noarch 2.14.3-1.fc38 fedora 152 k
shadow-utils x86_64 2:4.13-3.fc38 fedora 1.3 M
sqlite-libs x86_64 3.40.1-1.fc38 fedora 661 k
systemd-libs x86_64 252.4-598.fc38 fedora 632 k
tpm2-tss x86_64 4.0.0-1.fc38 fedora 711 k
tzdata noarch 2022g-1.fc38 fedora 716 k
xz-libs x86_64 5.2.9-1.fc38 fedora 93 k
zchunk-libs x86_64 1.2.3-1.fc38 fedora 51 k
zlib x86_64 1.2.13-2.fc38 fedora 94 k
Transaction Summary
================================================================================
Install 137 Packages
Total download size: 57 M
Installed size: 200 M
Downloading Packages:
(1/137): crypto-policies-20221215-2.gita4c31a3. 1.1 MB/s | 64 kB 00:00
(2/137): audit-libs-3.0.9-3.fc38.x86_64.rpm 1.9 MB/s | 117 kB 00:00
(3/137): curl-7.87.0-3.fc38.x86_64.rpm 5.5 MB/s | 347 kB 00:00
(4/137): dnf-4.14.0-2.fc38.noarch.rpm 111 MB/s | 467 kB 00:00
(5/137): dnf-data-4.14.0-2.fc38.noarch.rpm 12 MB/s | 41 kB 00:00
(6/137): dnf-plugins-core-4.3.1-2.fc38.noarch.r 10 MB/s | 34 kB 00:00
(7/137): file-libs-5.42-5.fc38.x86_64.rpm 93 MB/s | 676 kB 00:00
(8/137): glibc-2.36.9000-23.fc38.x86_64.rpm 175 MB/s | 2.1 MB 00:00
(9/137): glib2-2.74.1-3.fc38.x86_64.rpm 147 MB/s | 2.7 MB 00:00
(10/137): glibc-common-2.36.9000-23.fc38.x86_64 30 MB/s | 307 kB 00:00
(11/137): glibc-minimal-langpack-2.36.9000-23.f 8.3 MB/s | 34 kB 00:00
(12/137): libbrotli-1.0.9-11.fc38.x86_64.rpm 58 MB/s | 317 kB 00:00
(13/137): krb5-libs-1.20.1-7.fc38.x86_64.rpm 84 MB/s | 722 kB 00:00
(14/137): gnutls-3.7.8-11.fc38.x86_64.rpm 106 MB/s | 1.1 MB 00:00
(15/137): libcap-ng-0.8.3-5.fc38.x86_64.rpm 9.2 MB/s | 33 kB 00:00
(16/137): libcomps-0.1.18-5.fc38.x86_64.rpm 35 MB/s | 77 kB 00:00
(17/137): libcurl-7.87.0-3.fc38.x86_64.rpm 110 MB/s | 304 kB 00:00
(18/137): libevent-2.1.12-8.fc38.x86_64.rpm 65 MB/s | 258 kB 00:00
(19/137): libdnf-0.68.0-2.fc38.x86_64.rpm 115 MB/s | 653 kB 00:00
(20/137): libmodulemd-2.14.0-5.fc38.x86_64.rpm 65 MB/s | 234 kB 00:00
(21/137): libnghttp2-1.51.0-2.fc38.x86_64.rpm 30 MB/s | 76 kB 00:00
(22/137): libpsl-0.21.2-2.fc38.x86_64.rpm 41 MB/s | 66 kB 00:00
(23/137): librepo-1.15.1-2.fc38.x86_64.rpm 29 MB/s | 97 kB 00:00
(24/137): libreport-filesystem-2.17.6-2.fc38.no 4.5 MB/s | 14 kB 00:00
(25/137): libsolv-0.7.22-4.fc38.x86_64.rpm 87 MB/s | 412 kB 00:00
(26/137): python3-dbus-1.3.2-2.fc38.x86_64.rpm 54 MB/s | 147 kB 00:00
(27/137): libxml2-2.10.3-3.fc38.x86_64.rpm 127 MB/s | 701 kB 00:00
(28/137): python3-dnf-4.14.0-2.fc38.noarch.rpm 105 MB/s | 564 kB 00:00
(29/137): python3-dnf-plugins-core-4.3.1-2.fc38 52 MB/s | 263 kB 00:00
(30/137): python3-hawkey-0.68.0-2.fc38.x86_64.r 26 MB/s | 108 kB 00:00
(31/137): python3-libcomps-0.1.18-5.fc38.x86_64 22 MB/s | 48 kB 00:00
(32/137): python3-libdnf-0.68.0-2.fc38.x86_64.r 20 MB/s | 817 kB 00:00
(33/137): alternatives-1.21-1.fc38.x86_64.rpm 905 kB/s | 38 kB 00:00
(34/137): basesystem-11-14.fc37.noarch.rpm 163 kB/s | 7.0 kB 00:00
(35/137): bzip2-libs-1.0.8-12.fc37.x86_64.rpm 25 MB/s | 41 kB 00:00
(36/137): bash-5.2.15-1.fc38.x86_64.rpm 129 MB/s | 1.8 MB 00:00
(37/137): ca-certificates-2022.2.54-5.fc37.noar 59 MB/s | 829 kB 00:00
(38/137): coreutils-9.1-10.fc38.x86_64.rpm 74 MB/s | 1.1 MB 00:00
(39/137): dbus-libs-1.14.4-1.fc38.x86_64.rpm 53 MB/s | 156 kB 00:00
(40/137): cyrus-sasl-lib-2.1.28-8.fc38.x86_64.r 131 MB/s | 792 kB 00:00
(41/137): elfutils-default-yama-scope-0.188-3.f 3.8 MB/s | 15 kB 00:00
(42/137): elfutils-libelf-0.188-3.fc38.x86_64.r 73 MB/s | 196 kB 00:00
(43/137): elfutils-libs-0.188-3.fc38.x86_64.rpm 87 MB/s | 257 kB 00:00
(44/137): expat-2.5.0-1.fc38.x86_64.rpm 48 MB/s | 110 kB 00:00
(45/137): fedora-gpg-keys-38-0.3.noarch.rpm 64 MB/s | 125 kB 00:00
(46/137): fedora-release-38-0.15.noarch.rpm 6.0 MB/s | 11 kB 00:00
(47/137): fedora-release-common-38-0.15.noarch. 12 MB/s | 21 kB 00:00
(48/137): fedora-release-identity-basic-38-0.15 6.7 MB/s | 12 kB 00:00
(49/137): fedora-repos-38-0.3.noarch.rpm 3.3 MB/s | 10 kB 00:00
(50/137): fedora-repos-rawhide-38-0.3.noarch.rp 3.1 MB/s | 9.7 kB 00:00
(51/137): filesystem-3.18-2.fc37.x86_64.rpm 161 MB/s | 1.1 MB 00:00
(52/137): findutils-4.9.0-2.fc37.x86_64.rpm 42 MB/s | 492 kB 00:00
(53/137): gdbm-libs-1.23-2.fc37.x86_64.rpm 16 MB/s | 56 kB 00:00
(54/137): gmp-6.2.1-3.fc37.x86_64.rpm 81 MB/s | 315 kB 00:00
(55/137): gnupg2-2.4.0-1.fc38.x86_64.rpm 225 MB/s | 2.6 MB 00:00
(56/137): coreutils-common-9.1-10.fc38.x86_64.r 36 MB/s | 2.0 MB 00:00
(57/137): gpgme-1.17.1-3.fc38.x86_64.rpm 60 MB/s | 210 kB 00:00
(58/137): gawk-5.1.1-4.fc37.x86_64.rpm 33 MB/s | 1.0 MB 00:00
(59/137): ima-evm-utils-1.4-6.fc37.x86_64.rpm 32 MB/s | 63 kB 00:00
(60/137): grep-3.8-2.fc38.x86_64.rpm 75 MB/s | 292 kB 00:00
(61/137): json-c-0.16-3.fc38.x86_64.rpm 20 MB/s | 41 kB 00:00
(62/137): keyutils-libs-1.6.1-5.fc37.x86_64.rpm 13 MB/s | 31 kB 00:00
(63/137): libarchive-3.6.1-3.fc38.x86_64.rpm 132 MB/s | 397 kB 00:00
(64/137): libassuan-2.5.5-5.fc37.x86_64.rpm 28 MB/s | 67 kB 00:00
(65/137): libacl-2.3.1-4.fc37.x86_64.rpm 4.7 MB/s | 23 kB 00:00
(66/137): libb2-0.98.1-7.fc37.x86_64.rpm 17 MB/s | 25 kB 00:00
(67/137): libattr-2.5.1-5.fc37.x86_64.rpm 6.7 MB/s | 18 kB 00:00
(68/137): libblkid-2.38.1-3.fc38.x86_64.rpm 33 MB/s | 106 kB 00:00
(69/137): libcap-2.48-5.fc37.x86_64.rpm 25 MB/s | 67 kB 00:00
(70/137): libcom_err-1.46.5-3.fc37.x86_64.rpm 11 MB/s | 25 kB 00:00
(71/137): libffi-3.4.4-1.fc38.x86_64.rpm 26 MB/s | 38 kB 00:00
(72/137): libfsverity-1.4-8.fc37.x86_64.rpm 13 MB/s | 19 kB 00:00
(73/137): libgcrypt-1.10.1-6.fc38.x86_64.rpm 153 MB/s | 511 kB 00:00
(74/137): libgcc-13.0.1-0.1.fc38.x86_64.rpm 18 MB/s | 93 kB 00:00
(75/137): libgomp-13.0.1-0.1.fc38.x86_64.rpm 66 MB/s | 300 kB 00:00
(76/137): libgpg-error-1.46-1.fc38.x86_64.rpm 114 MB/s | 227 kB 00:00
(77/137): libksba-1.6.3-1.fc38.x86_64.rpm 61 MB/s | 158 kB 00:00
(78/137): libidn2-2.3.4-1.fc38.x86_64.rpm 46 MB/s | 160 kB 00:00
(79/137): libmount-2.38.1-3.fc38.x86_64.rpm 38 MB/s | 135 kB 00:00
(80/137): libnsl2-2.0.0-4.fc37.x86_64.rpm 17 MB/s | 30 kB 00:00
(81/137): libselinux-3.5-0.rc1.1.fc38.1.x86_64. 43 MB/s | 86 kB 00:00
(82/137): libsemanage-3.5-0.rc1.1.fc38.x86_64.r 45 MB/s | 119 kB 00:00
(83/137): libsepol-3.5-0.rc1.1.fc38.x86_64.rpm 104 MB/s | 322 kB 00:00
(84/137): libsigsegv-2.14-3.fc37.x86_64.rpm 11 MB/s | 27 kB 00:00
(85/137): libsmartcols-2.38.1-3.fc38.x86_64.rpm 32 MB/s | 64 kB 00:00
(86/137): libssh-config-0.10.4-2.fc38.noarch.rp 6.3 MB/s | 8.8 kB 00:00
(87/137): libssh-0.10.4-2.fc38.x86_64.rpm 77 MB/s | 209 kB 00:00
(88/137): libtasn1-4.19.0-1.fc38.x86_64.rpm 43 MB/s | 75 kB 00:00
(89/137): libtirpc-1.3.3-0.fc37.x86_64.rpm 37 MB/s | 93 kB 00:00
(90/137): libstdc++-13.0.1-0.1.fc38.x86_64.rpm 147 MB/s | 844 kB 00:00
(91/137): libuuid-2.38.1-3.fc38.x86_64.rpm 16 MB/s | 27 kB 00:00
(92/137): libunistring-1.0-2.fc37.x86_64.rpm 116 MB/s | 549 kB 00:00
(93/137): libverto-0.3.2-4.fc37.x86_64.rpm 7.5 MB/s | 21 kB 00:00
(94/137): libxcrypt-4.4.33-5.fc38.x86_64.rpm 61 MB/s | 120 kB 00:00
(95/137): libyaml-0.2.5-8.fc37.x86_64.rpm 41 MB/s | 60 kB 00:00
(96/137): libzstd-1.5.2-3.fc37.x86_64.rpm 95 MB/s | 294 kB 00:00
(97/137): lua-libs-5.4.4-7.fc38.x86_64.rpm 44 MB/s | 131 kB 00:00
(98/137): lz4-libs-1.9.4-1.fc38.x86_64.rpm 22 MB/s | 67 kB 00:00
(99/137): mpdecimal-2.5.1-4.fc37.x86_64.rpm 63 MB/s | 102 kB 00:00
(100/137): ncurses-base-6.4-2.20230114.fc38.noa 47 MB/s | 87 kB 00:00
(101/137): ncurses-libs-6.4-2.20230114.fc38.x86 77 MB/s | 333 kB 00:00
(102/137): nettle-3.8-2.fc37.x86_64.rpm 91 MB/s | 414 kB 00:00
(103/137): npth-1.6-10.fc38.x86_64.rpm 9.7 MB/s | 24 kB 00:00
(104/137): mpfr-4.1.1-2.fc38.x86_64.rpm 56 MB/s | 598 kB 00:00
(105/137): openldap-2.6.3-1.fc38.x86_64.rpm 61 MB/s | 254 kB 00:00
(106/137): p11-kit-trust-0.24.1-5.fc38.x86_64.r 32 MB/s | 137 kB 00:00
(107/137): p11-kit-0.24.1-5.fc38.x86_64.rpm 51 MB/s | 376 kB 00:00
(108/137): pcre2-10.42-1.fc38.x86_64.rpm 54 MB/s | 234 kB 00:00
(109/137): openssl-libs-3.0.7-3.fc38.x86_64.rpm 139 MB/s | 2.1 MB 00:00
(110/137): pcre2-syntax-10.42-1.fc38.noarch.rpm 23 MB/s | 144 kB 00:00
(111/137): popt-1.19-1.fc38.x86_64.rpm 19 MB/s | 66 kB 00:00
(112/137): publicsuffix-list-dafsa-20221208-1.f 10 MB/s | 59 kB 00:00
(113/137): python-setuptools-wheel-65.5.1-1.fc3 108 MB/s | 715 kB 00:00
(114/137): python-pip-wheel-22.3.1-1.fc38.noarc 137 MB/s | 1.4 MB 00:00
(115/137): python3-3.11.1-3.fc38.x86_64.rpm 4.1 MB/s | 27 kB 00:00
(116/137): python3-dateutil-2.8.2-4.fc37.noarch 68 MB/s | 361 kB 00:00
(117/137): python3-distro-1.8.0-1.fc38.noarch.r 33 MB/s | 49 kB 00:00
(118/137): python3-gpg-1.17.1-3.fc38.x86_64.rpm 78 MB/s | 296 kB 00:00
(119/137): python3-rpm-4.18.0-9.fc38.x86_64.rpm 20 MB/s | 73 kB 00:00
(120/137): python3-six-1.16.0-8.fc37.noarch.rpm 10 MB/s | 42 kB 00:00
(121/137): readline-8.2-2.fc38.x86_64.rpm 26 MB/s | 211 kB 00:00
(122/137): rpm-build-libs-4.18.0-9.fc38.x86_64. 15 MB/s | 95 kB 00:00
(123/137): rpm-libs-4.18.0-9.fc38.x86_64.rpm 61 MB/s | 312 kB 00:00
(124/137): rpm-sequoia-1.2.0-1.fc38.x86_64.rpm 100 MB/s | 829 kB 00:00
(125/137): rpm-4.18.0-9.fc38.x86_64.rpm 22 MB/s | 569 kB 00:00
(126/137): python3-libs-3.11.1-3.fc38.x86_64.rp 204 MB/s | 9.6 MB 00:00
(127/137): rpm-sign-libs-4.18.0-9.fc38.x86_64.r 2.2 MB/s | 27 kB 00:00
(128/137): sed-4.8-11.fc37.x86_64.rpm 26 MB/s | 306 kB 00:00
(129/137): setup-2.14.3-1.fc38.noarch.rpm 51 MB/s | 152 kB 00:00
(130/137): sqlite-libs-3.40.1-1.fc38.x86_64.rpm 75 MB/s | 661 kB 00:00
(131/137): systemd-libs-252.4-598.fc38.x86_64.r 68 MB/s | 632 kB 00:00
(132/137): tpm2-tss-4.0.0-1.fc38.x86_64.rpm 121 MB/s | 711 kB 00:00
(133/137): xz-libs-5.2.9-1.fc38.x86_64.rpm 31 MB/s | 93 kB 00:00
(134/137): tzdata-2022g-1.fc38.noarch.rpm 87 MB/s | 716 kB 00:00
(135/137): zchunk-libs-1.2.3-1.fc38.x86_64.rpm 32 MB/s | 51 kB 00:00
(136/137): zlib-1.2.13-2.fc38.x86_64.rpm 42 MB/s | 94 kB 00:00
(137/137): shadow-utils-4.13-3.fc38.x86_64.rpm 38 MB/s | 1.3 MB 00:00
--------------------------------------------------------------------------------
Total 3.6 MB/s | 57 MB 00:15
fedora 1.6 MB/s | 1.6 kB 00:00
Importing GPG key 0xEB10B464:
Userid : "Fedora (38) <fedora-38-primary@fedoraproject.org>"
Fingerprint: 6A51 BBAB BA3D 5467 B617 1221 809A 8D7C EB10 B464
From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-38-primary
Key imported successfully
fedora 1.6 MB/s | 1.6 kB 00:00
GPG key at file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-38-primary (0xEB10B464) is already installed
fedora 1.6 MB/s | 1.6 kB 00:00
Importing GPG key 0x5323552A:
Userid : "Fedora (37) <fedora-37-primary@fedoraproject.org>"
Fingerprint: ACB5 EE4E 831C 74BB 7C16 8D27 F55A D3FB 5323 552A
From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-37-primary
Key imported successfully
Running transaction check
Transaction check succeeded.
Running transaction test
Transaction test succeeded.
Running transaction
Running scriptlet: filesystem-3.18-2.fc37.x86_64 1/1
Preparing : 1/1
Installing : libgcc-13.0.1-0.1.fc38.x86_64 1/137
Running scriptlet: libgcc-13.0.1-0.1.fc38.x86_64 1/137
Installing : tzdata-2022g-1.fc38.noarch 2/137
Installing : crypto-policies-20221215-2.gita4c31a3.fc38.noarc 3/137
Running scriptlet: crypto-policies-20221215-2.gita4c31a3.fc38.noarc 3/137
Installing : fedora-release-identity-basic-38-0.15.noarch 4/137
Installing : python-setuptools-wheel-65.5.1-1.fc38.noarch 5/137
Installing : publicsuffix-list-dafsa-20221208-1.fc38.noarch 6/137
Installing : pcre2-syntax-10.42-1.fc38.noarch 7/137
Installing : ncurses-base-6.4-2.20230114.fc38.noarch 8/137
Installing : libssh-config-0.10.4-2.fc38.noarch 9/137
Installing : fedora-gpg-keys-38-0.3.noarch 10/137
Installing : fedora-release-38-0.15.noarch 11/137
Installing : fedora-release-common-38-0.15.noarch 12/137
Installing : fedora-repos-rawhide-38-0.3.noarch 13/137
Installing : fedora-repos-38-0.3.noarch 14/137
Installing : setup-2.14.3-1.fc38.noarch 15/137
Running scriptlet: setup-2.14.3-1.fc38.noarch 15/137
Installing : filesystem-3.18-2.fc37.x86_64 16/137
Installing : basesystem-11-14.fc37.noarch 17/137
Installing : glibc-minimal-langpack-2.36.9000-23.fc38.x86_64 18/137
Installing : glibc-common-2.36.9000-23.fc38.x86_64 19/137
Running scriptlet: glibc-2.36.9000-23.fc38.x86_64 20/137
Installing : glibc-2.36.9000-23.fc38.x86_64 20/137
Running scriptlet: glibc-2.36.9000-23.fc38.x86_64 20/137
Installing : ncurses-libs-6.4-2.20230114.fc38.x86_64 21/137
Installing : bash-5.2.15-1.fc38.x86_64 22/137
Running scriptlet: bash-5.2.15-1.fc38.x86_64 22/137
Installing : zlib-1.2.13-2.fc38.x86_64 23/137
Installing : bzip2-libs-1.0.8-12.fc37.x86_64 24/137
Installing : xz-libs-5.2.9-1.fc38.x86_64 25/137
Installing : libzstd-1.5.2-3.fc37.x86_64 26/137
Installing : sqlite-libs-3.40.1-1.fc38.x86_64 27/137
Installing : gmp-1:6.2.1-3.fc37.x86_64 28/137
Installing : libcap-2.48-5.fc37.x86_64 29/137
Installing : libgpg-error-1.46-1.fc38.x86_64 30/137
Installing : popt-1.19-1.fc38.x86_64 31/137
Installing : libxml2-2.10.3-3.fc38.x86_64 32/137
Installing : libstdc++-13.0.1-0.1.fc38.x86_64 33/137
Installing : libuuid-2.38.1-3.fc38.x86_64 34/137
Installing : lua-libs-5.4.4-7.fc38.x86_64 35/137
Installing : file-libs-5.42-5.fc38.x86_64 36/137
Installing : elfutils-libelf-0.188-3.fc38.x86_64 37/137
Installing : readline-8.2-2.fc38.x86_64 38/137
Installing : libattr-2.5.1-5.fc37.x86_64 39/137
Installing : libacl-2.3.1-4.fc37.x86_64 40/137
Installing : libffi-3.4.4-1.fc38.x86_64 41/137
Installing : p11-kit-0.24.1-5.fc38.x86_64 42/137
Installing : libunistring-1.0-2.fc37.x86_64 43/137
Installing : libidn2-2.3.4-1.fc38.x86_64 44/137
Installing : libxcrypt-4.4.33-5.fc38.x86_64 45/137
Installing : pcre2-10.42-1.fc38.x86_64 46/137
Installing : libassuan-2.5.5-5.fc37.x86_64 47/137
Installing : nettle-3.8-2.fc37.x86_64 48/137
Installing : rpm-sequoia-1.2.0-1.fc38.x86_64 49/137
Installing : expat-2.5.0-1.fc38.x86_64 50/137
Installing : gdbm-libs-1:1.23-2.fc37.x86_64 51/137
Installing : json-c-0.16-3.fc38.x86_64 52/137
Installing : keyutils-libs-1.6.1-5.fc37.x86_64 53/137
Installing : libcom_err-1.46.5-3.fc37.x86_64 54/137
Installing : libgomp-13.0.1-0.1.fc38.x86_64 55/137
Installing : libsepol-3.5-0.rc1.1.fc38.x86_64 56/137
Installing : libselinux-3.5-0.rc1.1.fc38.1.x86_64 57/137
Installing : sed-4.8-11.fc37.x86_64 58/137
Installing : libsmartcols-2.38.1-3.fc38.x86_64 59/137
Installing : libtasn1-4.19.0-1.fc38.x86_64 60/137
Installing : lz4-libs-1.9.4-1.fc38.x86_64 61/137
Installing : systemd-libs-252.4-598.fc38.x86_64 62/137
Installing : dbus-libs-1:1.14.4-1.fc38.x86_64 63/137
Installing : findutils-1:4.9.0-2.fc37.x86_64 64/137
Installing : libb2-0.98.1-7.fc37.x86_64 65/137
Installing : cyrus-sasl-lib-2.1.28-8.fc38.x86_64 66/137
Installing : libcomps-0.1.18-5.fc38.x86_64 67/137
Installing : grep-3.8-2.fc38.x86_64 68/137
Installing : libpsl-0.21.2-2.fc38.x86_64 69/137
Installing : libblkid-2.38.1-3.fc38.x86_64 70/137
Installing : libmount-2.38.1-3.fc38.x86_64 71/137
Installing : mpdecimal-2.5.1-4.fc37.x86_64 72/137
Installing : libgcrypt-1.10.1-6.fc38.x86_64 73/137
Installing : libksba-1.6.3-1.fc38.x86_64 74/137
Installing : mpfr-4.1.1-2.fc38.x86_64 75/137
Installing : elfutils-default-yama-scope-0.188-3.fc38.noarch 76/137
Running scriptlet: elfutils-default-yama-scope-0.188-3.fc38.noarch 76/137
Installing : elfutils-libs-0.188-3.fc38.x86_64 77/137
Installing : libbrotli-1.0.9-11.fc38.x86_64 78/137
Installing : libcap-ng-0.8.3-5.fc38.x86_64 79/137
Installing : audit-libs-3.0.9-3.fc38.x86_64 80/137
Installing : rpm-libs-4.18.0-9.fc38.x86_64 81/137
Installing : rpm-build-libs-4.18.0-9.fc38.x86_64 82/137
Installing : libsemanage-3.5-0.rc1.1.fc38.x86_64 83/137
Installing : shadow-utils-2:4.13-3.fc38.x86_64 84/137
Installing : libnghttp2-1.51.0-2.fc38.x86_64 85/137
Installing : alternatives-1.21-1.fc38.x86_64 86/137
Installing : p11-kit-trust-0.24.1-5.fc38.x86_64 87/137
Running scriptlet: p11-kit-trust-0.24.1-5.fc38.x86_64 87/137
Installing : gnutls-3.7.8-11.fc38.x86_64 88/137
Installing : glib2-2.74.1-3.fc38.x86_64 89/137
Installing : libsigsegv-2.14-3.fc37.x86_64 90/137
Installing : gawk-5.1.1-4.fc37.x86_64 91/137
Installing : libverto-0.3.2-4.fc37.x86_64 92/137
Installing : libyaml-0.2.5-8.fc37.x86_64 93/137
Installing : libmodulemd-2.14.0-5.fc38.x86_64 94/137
Installing : npth-1.6-10.fc38.x86_64 95/137
Installing : coreutils-common-9.1-10.fc38.x86_64 96/137
Installing : openssl-libs-1:3.0.7-3.fc38.x86_64 97/137
Installing : coreutils-9.1-10.fc38.x86_64 98/137
Running scriptlet: ca-certificates-2022.2.54-5.fc37.noarch 99/137
Installing : ca-certificates-2022.2.54-5.fc37.noarch 99/137
Running scriptlet: ca-certificates-2022.2.54-5.fc37.noarch 99/137
Installing : krb5-libs-1.20.1-7.fc38.x86_64 100/137
Installing : libtirpc-1.3.3-0.fc37.x86_64 101/137
Installing : libfsverity-1.4-8.fc37.x86_64 102/137
Installing : zchunk-libs-1.2.3-1.fc38.x86_64 103/137
Installing : libsolv-0.7.22-4.fc38.x86_64 104/137
Installing : libnsl2-2.0.0-4.fc37.x86_64 105/137
Installing : libssh-0.10.4-2.fc38.x86_64 106/137
Installing : python-pip-wheel-22.3.1-1.fc38.noarch 107/137
Installing : python3-3.11.1-3.fc38.x86_64 108/137
Installing : python3-libs-3.11.1-3.fc38.x86_64 109/137
Installing : python3-dbus-1.3.2-2.fc38.x86_64 110/137
Installing : python3-libcomps-0.1.18-5.fc38.x86_64 111/137
Installing : python3-distro-1.8.0-1.fc38.noarch 112/137
Installing : python3-six-1.16.0-8.fc37.noarch 113/137
Installing : python3-dateutil-1:2.8.2-4.fc37.noarch 114/137
Installing : libevent-2.1.12-8.fc38.x86_64 115/137
Installing : openldap-2.6.3-1.fc38.x86_64 116/137
Installing : libcurl-7.87.0-3.fc38.x86_64 117/137
Installing : gnupg2-2.4.0-1.fc38.x86_64 118/137
Installing : gpgme-1.17.1-3.fc38.x86_64 119/137
Installing : librepo-1.15.1-2.fc38.x86_64 120/137
Installing : libdnf-0.68.0-2.fc38.x86_64 121/137
Installing : python3-libdnf-0.68.0-2.fc38.x86_64 122/137
Installing : python3-hawkey-0.68.0-2.fc38.x86_64 123/137
Installing : python3-gpg-1.17.1-3.fc38.x86_64 124/137
Installing : curl-7.87.0-3.fc38.x86_64 125/137
Running scriptlet: tpm2-tss-4.0.0-1.fc38.x86_64 126/137
useradd: Warning: missing or non-executable shell '/usr/sbin/nologin'
Installing : tpm2-tss-4.0.0-1.fc38.x86_64 126/137
Installing : ima-evm-utils-1.4-6.fc37.x86_64 127/137
Installing : rpm-sign-libs-4.18.0-9.fc38.x86_64 128/137
Installing : python3-rpm-4.18.0-9.fc38.x86_64 129/137
Installing : libarchive-3.6.1-3.fc38.x86_64 130/137
Installing : libreport-filesystem-2.17.6-2.fc38.noarch 131/137
Installing : dnf-data-4.14.0-2.fc38.noarch 132/137
warning: /etc/dnf/dnf.conf created as /etc/dnf/dnf.conf.rpmnew
Installing : python3-dnf-4.14.0-2.fc38.noarch 133/137
Installing : python3-dnf-plugins-core-4.3.1-2.fc38.noarch 134/137
Installing : dnf-plugins-core-4.3.1-2.fc38.noarch 135/137
Installing : dnf-4.14.0-2.fc38.noarch 136/137
Running scriptlet: dnf-4.14.0-2.fc38.noarch 136/137
Running scriptlet: rpm-4.18.0-9.fc38.x86_64 137/137
Installing : rpm-4.18.0-9.fc38.x86_64 137/137
Running scriptlet: filesystem-3.18-2.fc37.x86_64 137/137
Running scriptlet: ca-certificates-2022.2.54-5.fc37.noarch 137/137
Running scriptlet: rpm-4.18.0-9.fc38.x86_64 137/137
Verifying : audit-libs-3.0.9-3.fc38.x86_64 1/137
Verifying : crypto-policies-20221215-2.gita4c31a3.fc38.noarc 2/137
Verifying : curl-7.87.0-3.fc38.x86_64 3/137
Verifying : dnf-4.14.0-2.fc38.noarch 4/137
Verifying : dnf-data-4.14.0-2.fc38.noarch 5/137
Verifying : dnf-plugins-core-4.3.1-2.fc38.noarch 6/137
Verifying : file-libs-5.42-5.fc38.x86_64 7/137
Verifying : glib2-2.74.1-3.fc38.x86_64 8/137
Verifying : glibc-2.36.9000-23.fc38.x86_64 9/137
Verifying : glibc-common-2.36.9000-23.fc38.x86_64 10/137
Verifying : glibc-minimal-langpack-2.36.9000-23.fc38.x86_64 11/137
Verifying : gnutls-3.7.8-11.fc38.x86_64 12/137
Verifying : krb5-libs-1.20.1-7.fc38.x86_64 13/137
Verifying : libbrotli-1.0.9-11.fc38.x86_64 14/137
Verifying : libcap-ng-0.8.3-5.fc38.x86_64 15/137
Verifying : libcomps-0.1.18-5.fc38.x86_64 16/137
Verifying : libcurl-7.87.0-3.fc38.x86_64 17/137
Verifying : libdnf-0.68.0-2.fc38.x86_64 18/137
Verifying : libevent-2.1.12-8.fc38.x86_64 19/137
Verifying : libmodulemd-2.14.0-5.fc38.x86_64 20/137
Verifying : libnghttp2-1.51.0-2.fc38.x86_64 21/137
Verifying : libpsl-0.21.2-2.fc38.x86_64 22/137
Verifying : librepo-1.15.1-2.fc38.x86_64 23/137
Verifying : libreport-filesystem-2.17.6-2.fc38.noarch 24/137
Verifying : libsolv-0.7.22-4.fc38.x86_64 25/137
Verifying : libxml2-2.10.3-3.fc38.x86_64 26/137
Verifying : python3-dbus-1.3.2-2.fc38.x86_64 27/137
Verifying : python3-dnf-4.14.0-2.fc38.noarch 28/137
Verifying : python3-dnf-plugins-core-4.3.1-2.fc38.noarch 29/137
Verifying : python3-hawkey-0.68.0-2.fc38.x86_64 30/137
Verifying : python3-libcomps-0.1.18-5.fc38.x86_64 31/137
Verifying : python3-libdnf-0.68.0-2.fc38.x86_64 32/137
Verifying : alternatives-1.21-1.fc38.x86_64 33/137
Verifying : basesystem-11-14.fc37.noarch 34/137
Verifying : bash-5.2.15-1.fc38.x86_64 35/137
Verifying : bzip2-libs-1.0.8-12.fc37.x86_64 36/137
Verifying : ca-certificates-2022.2.54-5.fc37.noarch 37/137
Verifying : coreutils-9.1-10.fc38.x86_64 38/137
Verifying : coreutils-common-9.1-10.fc38.x86_64 39/137
Verifying : cyrus-sasl-lib-2.1.28-8.fc38.x86_64 40/137
Verifying : dbus-libs-1:1.14.4-1.fc38.x86_64 41/137
Verifying : elfutils-default-yama-scope-0.188-3.fc38.noarch 42/137
Verifying : elfutils-libelf-0.188-3.fc38.x86_64 43/137
Verifying : elfutils-libs-0.188-3.fc38.x86_64 44/137
Verifying : expat-2.5.0-1.fc38.x86_64 45/137
Verifying : fedora-gpg-keys-38-0.3.noarch 46/137
Verifying : fedora-release-38-0.15.noarch 47/137
Verifying : fedora-release-common-38-0.15.noarch 48/137
Verifying : fedora-release-identity-basic-38-0.15.noarch 49/137
Verifying : fedora-repos-38-0.3.noarch 50/137
Verifying : fedora-repos-rawhide-38-0.3.noarch 51/137
Verifying : filesystem-3.18-2.fc37.x86_64 52/137
Verifying : findutils-1:4.9.0-2.fc37.x86_64 53/137
Verifying : gawk-5.1.1-4.fc37.x86_64 54/137
Verifying : gdbm-libs-1:1.23-2.fc37.x86_64 55/137
Verifying : gmp-1:6.2.1-3.fc37.x86_64 56/137
Verifying : gnupg2-2.4.0-1.fc38.x86_64 57/137
Verifying : gpgme-1.17.1-3.fc38.x86_64 58/137
Verifying : grep-3.8-2.fc38.x86_64 59/137
Verifying : ima-evm-utils-1.4-6.fc37.x86_64 60/137
Verifying : json-c-0.16-3.fc38.x86_64 61/137
Verifying : keyutils-libs-1.6.1-5.fc37.x86_64 62/137
Verifying : libacl-2.3.1-4.fc37.x86_64 63/137
Verifying : libarchive-3.6.1-3.fc38.x86_64 64/137
Verifying : libassuan-2.5.5-5.fc37.x86_64 65/137
Verifying : libattr-2.5.1-5.fc37.x86_64 66/137
Verifying : libb2-0.98.1-7.fc37.x86_64 67/137
Verifying : libblkid-2.38.1-3.fc38.x86_64 68/137
Verifying : libcap-2.48-5.fc37.x86_64 69/137
Verifying : libcom_err-1.46.5-3.fc37.x86_64 70/137
Verifying : libffi-3.4.4-1.fc38.x86_64 71/137
Verifying : libfsverity-1.4-8.fc37.x86_64 72/137
Verifying : libgcc-13.0.1-0.1.fc38.x86_64 73/137
Verifying : libgcrypt-1.10.1-6.fc38.x86_64 74/137
Verifying : libgomp-13.0.1-0.1.fc38.x86_64 75/137
Verifying : libgpg-error-1.46-1.fc38.x86_64 76/137
Verifying : libidn2-2.3.4-1.fc38.x86_64 77/137
Verifying : libksba-1.6.3-1.fc38.x86_64 78/137
Verifying : libmount-2.38.1-3.fc38.x86_64 79/137
Verifying : libnsl2-2.0.0-4.fc37.x86_64 80/137
Verifying : libselinux-3.5-0.rc1.1.fc38.1.x86_64 81/137
Verifying : libsemanage-3.5-0.rc1.1.fc38.x86_64 82/137
Verifying : libsepol-3.5-0.rc1.1.fc38.x86_64 83/137
Verifying : libsigsegv-2.14-3.fc37.x86_64 84/137
Verifying : libsmartcols-2.38.1-3.fc38.x86_64 85/137
Verifying : libssh-0.10.4-2.fc38.x86_64 86/137
Verifying : libssh-config-0.10.4-2.fc38.noarch 87/137
Verifying : libstdc++-13.0.1-0.1.fc38.x86_64 88/137
Verifying : libtasn1-4.19.0-1.fc38.x86_64 89/137
Verifying : libtirpc-1.3.3-0.fc37.x86_64 90/137
Verifying : libunistring-1.0-2.fc37.x86_64 91/137
Verifying : libuuid-2.38.1-3.fc38.x86_64 92/137
Verifying : libverto-0.3.2-4.fc37.x86_64 93/137
Verifying : libxcrypt-4.4.33-5.fc38.x86_64 94/137
Verifying : libyaml-0.2.5-8.fc37.x86_64 95/137
Verifying : libzstd-1.5.2-3.fc37.x86_64 96/137
Verifying : lua-libs-5.4.4-7.fc38.x86_64 97/137
Verifying : lz4-libs-1.9.4-1.fc38.x86_64 98/137
Verifying : mpdecimal-2.5.1-4.fc37.x86_64 99/137
Verifying : mpfr-4.1.1-2.fc38.x86_64 100/137
Verifying : ncurses-base-6.4-2.20230114.fc38.noarch 101/137
Verifying : ncurses-libs-6.4-2.20230114.fc38.x86_64 102/137
Verifying : nettle-3.8-2.fc37.x86_64 103/137
Verifying : npth-1.6-10.fc38.x86_64 104/137
Verifying : openldap-2.6.3-1.fc38.x86_64 105/137
Verifying : openssl-libs-1:3.0.7-3.fc38.x86_64 106/137
Verifying : p11-kit-0.24.1-5.fc38.x86_64 107/137
Verifying : p11-kit-trust-0.24.1-5.fc38.x86_64 108/137
Verifying : pcre2-10.42-1.fc38.x86_64 109/137
Verifying : pcre2-syntax-10.42-1.fc38.noarch 110/137
Verifying : popt-1.19-1.fc38.x86_64 111/137
Verifying : publicsuffix-list-dafsa-20221208-1.fc38.noarch 112/137
Verifying : python-pip-wheel-22.3.1-1.fc38.noarch 113/137
Verifying : python-setuptools-wheel-65.5.1-1.fc38.noarch 114/137
Verifying : python3-3.11.1-3.fc38.x86_64 115/137
Verifying : python3-dateutil-1:2.8.2-4.fc37.noarch 116/137
Verifying : python3-distro-1.8.0-1.fc38.noarch 117/137
Verifying : python3-gpg-1.17.1-3.fc38.x86_64 118/137
Verifying : python3-libs-3.11.1-3.fc38.x86_64 119/137
Verifying : python3-rpm-4.18.0-9.fc38.x86_64 120/137
Verifying : python3-six-1.16.0-8.fc37.noarch 121/137
Verifying : readline-8.2-2.fc38.x86_64 122/137
Verifying : rpm-4.18.0-9.fc38.x86_64 123/137
Verifying : rpm-build-libs-4.18.0-9.fc38.x86_64 124/137
Verifying : rpm-libs-4.18.0-9.fc38.x86_64 125/137
Verifying : rpm-sequoia-1.2.0-1.fc38.x86_64 126/137
Verifying : rpm-sign-libs-4.18.0-9.fc38.x86_64 127/137
Verifying : sed-4.8-11.fc37.x86_64 128/137
Verifying : setup-2.14.3-1.fc38.noarch 129/137
Verifying : shadow-utils-2:4.13-3.fc38.x86_64 130/137
Verifying : sqlite-libs-3.40.1-1.fc38.x86_64 131/137
Verifying : systemd-libs-252.4-598.fc38.x86_64 132/137
Verifying : tpm2-tss-4.0.0-1.fc38.x86_64 133/137
Verifying : tzdata-2022g-1.fc38.noarch 134/137
Verifying : xz-libs-5.2.9-1.fc38.x86_64 135/137
Verifying : zchunk-libs-1.2.3-1.fc38.x86_64 136/137
Verifying : zlib-1.2.13-2.fc38.x86_64 137/137
Installed products updated.
Installed:
alternatives-1.21-1.fc38.x86_64
audit-libs-3.0.9-3.fc38.x86_64
basesystem-11-14.fc37.noarch
bash-5.2.15-1.fc38.x86_64
bzip2-libs-1.0.8-12.fc37.x86_64
ca-certificates-2022.2.54-5.fc37.noarch
coreutils-9.1-10.fc38.x86_64
coreutils-common-9.1-10.fc38.x86_64
crypto-policies-20221215-2.gita4c31a3.fc38.noarch
curl-7.87.0-3.fc38.x86_64
cyrus-sasl-lib-2.1.28-8.fc38.x86_64
dbus-libs-1:1.14.4-1.fc38.x86_64
dnf-4.14.0-2.fc38.noarch
dnf-data-4.14.0-2.fc38.noarch
dnf-plugins-core-4.3.1-2.fc38.noarch
elfutils-default-yama-scope-0.188-3.fc38.noarch
elfutils-libelf-0.188-3.fc38.x86_64
elfutils-libs-0.188-3.fc38.x86_64
expat-2.5.0-1.fc38.x86_64
fedora-gpg-keys-38-0.3.noarch
fedora-release-38-0.15.noarch
fedora-release-common-38-0.15.noarch
fedora-release-identity-basic-38-0.15.noarch
fedora-repos-38-0.3.noarch
fedora-repos-rawhide-38-0.3.noarch
file-libs-5.42-5.fc38.x86_64
filesystem-3.18-2.fc37.x86_64
findutils-1:4.9.0-2.fc37.x86_64
gawk-5.1.1-4.fc37.x86_64
gdbm-libs-1:1.23-2.fc37.x86_64
glib2-2.74.1-3.fc38.x86_64
glibc-2.36.9000-23.fc38.x86_64
glibc-common-2.36.9000-23.fc38.x86_64
glibc-minimal-langpack-2.36.9000-23.fc38.x86_64
gmp-1:6.2.1-3.fc37.x86_64
gnupg2-2.4.0-1.fc38.x86_64
gnutls-3.7.8-11.fc38.x86_64
gpgme-1.17.1-3.fc38.x86_64
grep-3.8-2.fc38.x86_64
ima-evm-utils-1.4-6.fc37.x86_64
json-c-0.16-3.fc38.x86_64
keyutils-libs-1.6.1-5.fc37.x86_64
krb5-libs-1.20.1-7.fc38.x86_64
libacl-2.3.1-4.fc37.x86_64
libarchive-3.6.1-3.fc38.x86_64
libassuan-2.5.5-5.fc37.x86_64
libattr-2.5.1-5.fc37.x86_64
libb2-0.98.1-7.fc37.x86_64
libblkid-2.38.1-3.fc38.x86_64
libbrotli-1.0.9-11.fc38.x86_64
libcap-2.48-5.fc37.x86_64
libcap-ng-0.8.3-5.fc38.x86_64
libcom_err-1.46.5-3.fc37.x86_64
libcomps-0.1.18-5.fc38.x86_64
libcurl-7.87.0-3.fc38.x86_64
libdnf-0.68.0-2.fc38.x86_64
libevent-2.1.12-8.fc38.x86_64
libffi-3.4.4-1.fc38.x86_64
libfsverity-1.4-8.fc37.x86_64
libgcc-13.0.1-0.1.fc38.x86_64
libgcrypt-1.10.1-6.fc38.x86_64
libgomp-13.0.1-0.1.fc38.x86_64
libgpg-error-1.46-1.fc38.x86_64
libidn2-2.3.4-1.fc38.x86_64
libksba-1.6.3-1.fc38.x86_64
libmodulemd-2.14.0-5.fc38.x86_64
libmount-2.38.1-3.fc38.x86_64
libnghttp2-1.51.0-2.fc38.x86_64
libnsl2-2.0.0-4.fc37.x86_64
libpsl-0.21.2-2.fc38.x86_64
librepo-1.15.1-2.fc38.x86_64
libreport-filesystem-2.17.6-2.fc38.noarch
libselinux-3.5-0.rc1.1.fc38.1.x86_64
libsemanage-3.5-0.rc1.1.fc38.x86_64
libsepol-3.5-0.rc1.1.fc38.x86_64
libsigsegv-2.14-3.fc37.x86_64
libsmartcols-2.38.1-3.fc38.x86_64
libsolv-0.7.22-4.fc38.x86_64
libssh-0.10.4-2.fc38.x86_64
libssh-config-0.10.4-2.fc38.noarch
libstdc++-13.0.1-0.1.fc38.x86_64
libtasn1-4.19.0-1.fc38.x86_64
libtirpc-1.3.3-0.fc37.x86_64
libunistring-1.0-2.fc37.x86_64
libuuid-2.38.1-3.fc38.x86_64
libverto-0.3.2-4.fc37.x86_64
libxcrypt-4.4.33-5.fc38.x86_64
libxml2-2.10.3-3.fc38.x86_64
libyaml-0.2.5-8.fc37.x86_64
libzstd-1.5.2-3.fc37.x86_64
lua-libs-5.4.4-7.fc38.x86_64
lz4-libs-1.9.4-1.fc38.x86_64
mpdecimal-2.5.1-4.fc37.x86_64
mpfr-4.1.1-2.fc38.x86_64
ncurses-base-6.4-2.20230114.fc38.noarch
ncurses-libs-6.4-2.20230114.fc38.x86_64
nettle-3.8-2.fc37.x86_64
npth-1.6-10.fc38.x86_64
openldap-2.6.3-1.fc38.x86_64
openssl-libs-1:3.0.7-3.fc38.x86_64
p11-kit-0.24.1-5.fc38.x86_64
p11-kit-trust-0.24.1-5.fc38.x86_64
pcre2-10.42-1.fc38.x86_64
pcre2-syntax-10.42-1.fc38.noarch
popt-1.19-1.fc38.x86_64
publicsuffix-list-dafsa-20221208-1.fc38.noarch
python-pip-wheel-22.3.1-1.fc38.noarch
python-setuptools-wheel-65.5.1-1.fc38.noarch
python3-3.11.1-3.fc38.x86_64
python3-dateutil-1:2.8.2-4.fc37.noarch
python3-dbus-1.3.2-2.fc38.x86_64
python3-distro-1.8.0-1.fc38.noarch
python3-dnf-4.14.0-2.fc38.noarch
python3-dnf-plugins-core-4.3.1-2.fc38.noarch
python3-gpg-1.17.1-3.fc38.x86_64
python3-hawkey-0.68.0-2.fc38.x86_64
python3-libcomps-0.1.18-5.fc38.x86_64
python3-libdnf-0.68.0-2.fc38.x86_64
python3-libs-3.11.1-3.fc38.x86_64
python3-rpm-4.18.0-9.fc38.x86_64
python3-six-1.16.0-8.fc37.noarch
readline-8.2-2.fc38.x86_64
rpm-4.18.0-9.fc38.x86_64
rpm-build-libs-4.18.0-9.fc38.x86_64
rpm-libs-4.18.0-9.fc38.x86_64
rpm-sequoia-1.2.0-1.fc38.x86_64
rpm-sign-libs-4.18.0-9.fc38.x86_64
sed-4.8-11.fc37.x86_64
setup-2.14.3-1.fc38.noarch
shadow-utils-2:4.13-3.fc38.x86_64
sqlite-libs-3.40.1-1.fc38.x86_64
systemd-libs-252.4-598.fc38.x86_64
tpm2-tss-4.0.0-1.fc38.x86_64
tzdata-2022g-1.fc38.noarch
xz-libs-5.2.9-1.fc38.x86_64
zchunk-libs-1.2.3-1.fc38.x86_64
zlib-1.2.13-2.fc38.x86_64
Complete!
Finish(bootstrap): dnf install
Start(bootstrap): creating root cache
Finish(bootstrap): creating root cache
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1674292270.246865/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
Mock Version: 3.5
INFO: Mock Version: 3.5
Start: dnf install
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Copr repository 36 MB/s | 10 MB 00:00
fedora 36 MB/s | 65 MB 00:01
Last metadata expiration check: 0:00:02 ago on Sat Jan 21 09:12:03 2023.
Dependencies resolved.
================================================================================
Package Arch Version Repo Size
================================================================================
Installing group/module packages:
bash x86_64 5.2.15-1.fc38 fedora 1.8 M
bzip2 x86_64 1.0.8-12.fc37 fedora 52 k
coreutils x86_64 9.1-10.fc38 fedora 1.1 M
cpio x86_64 2.13-13.fc38 fedora 276 k
diffutils x86_64 3.9-1.fc38 fedora 397 k
fedora-release-common noarch 38-0.15 fedora 21 k
findutils x86_64 1:4.9.0-2.fc37 fedora 492 k
gawk x86_64 5.1.1-4.fc37 fedora 1.0 M
glibc-minimal-langpack x86_64 2.36.9000-23.fc38 copr_base 34 k
grep x86_64 3.8-2.fc38 fedora 292 k
gzip x86_64 1.12-2.fc37 fedora 166 k
info x86_64 7.0.1-1.fc38 fedora 181 k
patch x86_64 2.7.6-17.fc37 fedora 124 k
redhat-rpm-config noarch 245-1.fc38 fedora 82 k
rpm-build x86_64 4.18.0-9.fc38 fedora 77 k
sed x86_64 4.8-11.fc37 fedora 306 k
shadow-utils x86_64 2:4.13-3.fc38 fedora 1.3 M
tar x86_64 2:1.34-5.fc38 fedora 885 k
unzip x86_64 6.0-58.fc38 fedora 182 k
util-linux x86_64 2.38.1-3.fc38 fedora 2.3 M
which x86_64 2.21-36.fc38 fedora 41 k
xz x86_64 5.2.9-1.fc38 fedora 306 k
Installing dependencies:
alternatives x86_64 1.21-1.fc38 fedora 38 k
ansible-srpm-macros noarch 1-8.1.fc38 fedora 8.6 k
audit-libs x86_64 3.0.9-3.fc38 copr_base 117 k
authselect x86_64 1.4.2-1.fc38 fedora 144 k
authselect-libs x86_64 1.4.2-1.fc38 fedora 250 k
basesystem noarch 11-14.fc37 fedora 7.0 k
binutils x86_64 2.39-6.fc38 fedora 5.5 M
binutils-gold x86_64 2.39-6.fc38 fedora 777 k
bzip2-libs x86_64 1.0.8-12.fc37 fedora 41 k
ca-certificates noarch 2022.2.54-5.fc37 fedora 829 k
coreutils-common x86_64 9.1-10.fc38 fedora 2.0 M
cracklib x86_64 2.9.7-30.fc38 fedora 92 k
crypto-policies noarch 20221215-2.gita4c31a3.fc38 copr_base 64 k
curl x86_64 7.87.0-3.fc38 copr_base 347 k
cyrus-sasl-lib x86_64 2.1.28-8.fc38 fedora 792 k
debugedit x86_64 5.0-5.fc37 fedora 77 k
dwz x86_64 0.15-1.fc38 fedora 136 k
ed x86_64 1.19-1.fc38 fedora 78 k
efi-srpm-macros noarch 5-6.fc37 fedora 22 k
elfutils x86_64 0.188-3.fc38 fedora 529 k
elfutils-debuginfod-client x86_64 0.188-3.fc38 fedora 40 k
elfutils-default-yama-scope noarch 0.188-3.fc38 fedora 15 k
elfutils-libelf x86_64 0.188-3.fc38 fedora 196 k
elfutils-libs x86_64 0.188-3.fc38 fedora 257 k
fedora-gpg-keys noarch 38-0.3 fedora 125 k
fedora-release noarch 38-0.15 fedora 11 k
fedora-release-identity-basic
noarch 38-0.15 fedora 12 k
fedora-repos noarch 38-0.3 fedora 10 k
fedora-repos-rawhide noarch 38-0.3 fedora 9.7 k
file x86_64 5.42-5.fc38 copr_base 49 k
file-libs x86_64 5.42-5.fc38 copr_base 676 k
filesystem x86_64 3.18-2.fc37 fedora 1.1 M
fonts-srpm-macros noarch 1:2.0.5-10.fc38 fedora 26 k
fpc-srpm-macros noarch 1.3-6.fc37 fedora 7.7 k
gdb-minimal x86_64 12.1-10.fc38 fedora 3.7 M
gdbm-libs x86_64 1:1.23-2.fc37 fedora 56 k
ghc-srpm-macros noarch 1.5.0-7.fc37 fedora 7.8 k
glibc x86_64 2.36.9000-23.fc38 copr_base 2.1 M
glibc-common x86_64 2.36.9000-23.fc38 copr_base 307 k
glibc-gconv-extra x86_64 2.36.9000-23.fc38 copr_base 1.5 M
gmp x86_64 1:6.2.1-3.fc37 fedora 315 k
gnat-srpm-macros noarch 5-1.fc38 fedora 8.4 k
go-srpm-macros noarch 3.2.0-1.fc38 fedora 27 k
jansson x86_64 2.13.1-6.fc38 copr_base 45 k
kernel-srpm-macros noarch 1.0-15.fc37 fedora 9.4 k
keyutils-libs x86_64 1.6.1-5.fc37 fedora 31 k
krb5-libs x86_64 1.20.1-7.fc38 copr_base 722 k
libacl x86_64 2.3.1-4.fc37 fedora 23 k
libarchive x86_64 3.6.1-3.fc38 fedora 397 k
libattr x86_64 2.5.1-5.fc37 fedora 18 k
libblkid x86_64 2.38.1-3.fc38 fedora 106 k
libbrotli x86_64 1.0.9-11.fc38 copr_base 317 k
libcap x86_64 2.48-5.fc37 fedora 67 k
libcap-ng x86_64 0.8.3-5.fc38 copr_base 33 k
libcom_err x86_64 1.46.5-3.fc37 fedora 25 k
libcurl x86_64 7.87.0-3.fc38 copr_base 304 k
libdb x86_64 5.3.28-54.fc38 fedora 764 k
libeconf x86_64 0.4.0-4.fc37 fedora 27 k
libevent x86_64 2.1.12-8.fc38 copr_base 258 k
libfdisk x86_64 2.38.1-3.fc38 fedora 160 k
libffi x86_64 3.4.4-1.fc38 fedora 38 k
libgcc x86_64 13.0.1-0.1.fc38 fedora 93 k
libgomp x86_64 13.0.1-0.1.fc38 fedora 300 k
libidn2 x86_64 2.3.4-1.fc38 fedora 160 k
libmount x86_64 2.38.1-3.fc38 fedora 135 k
libnghttp2 x86_64 1.51.0-2.fc38 copr_base 76 k
libnsl2 x86_64 2.0.0-4.fc37 fedora 30 k
libpkgconf x86_64 1.8.0-3.fc37 fedora 36 k
libpsl x86_64 0.21.2-2.fc38 copr_base 66 k
libpwquality x86_64 1.4.5-2.fc38 copr_base 108 k
libselinux x86_64 3.5-0.rc1.1.fc38.1 fedora 86 k
libsemanage x86_64 3.5-0.rc1.1.fc38 fedora 119 k
libsepol x86_64 3.5-0.rc1.1.fc38 fedora 322 k
libsigsegv x86_64 2.14-3.fc37 fedora 27 k
libsmartcols x86_64 2.38.1-3.fc38 fedora 64 k
libssh x86_64 0.10.4-2.fc38 fedora 209 k
libssh-config noarch 0.10.4-2.fc38 fedora 8.8 k
libstdc++ x86_64 13.0.1-0.1.fc38 fedora 844 k
libtasn1 x86_64 4.19.0-1.fc38 fedora 75 k
libtirpc x86_64 1.3.3-0.fc37 fedora 93 k
libunistring x86_64 1.0-2.fc37 fedora 549 k
libutempter x86_64 1.2.1-7.fc37 fedora 26 k
libuuid x86_64 2.38.1-3.fc38 fedora 27 k
libverto x86_64 0.3.2-4.fc37 fedora 21 k
libxcrypt x86_64 4.4.33-5.fc38 fedora 120 k
libxml2 x86_64 2.10.3-3.fc38 copr_base 701 k
libzstd x86_64 1.5.2-3.fc37 fedora 294 k
lua-libs x86_64 5.4.4-7.fc38 fedora 131 k
lua-srpm-macros noarch 1-7.fc37 fedora 8.8 k
lz4-libs x86_64 1.9.4-1.fc38 fedora 67 k
mpfr x86_64 4.1.1-2.fc38 fedora 598 k
ncurses-base noarch 6.4-2.20230114.fc38 fedora 87 k
ncurses-libs x86_64 6.4-2.20230114.fc38 fedora 333 k
nettle x86_64 3.8-2.fc37 fedora 414 k
nim-srpm-macros noarch 3-7.fc37 fedora 8.4 k
ocaml-srpm-macros noarch 7-2.fc37 fedora 13 k
openblas-srpm-macros noarch 2-12.fc37 fedora 7.5 k
openldap x86_64 2.6.3-1.fc38 fedora 254 k
openssl-libs x86_64 1:3.0.7-3.fc38 fedora 2.1 M
p11-kit x86_64 0.24.1-5.fc38 fedora 376 k
p11-kit-trust x86_64 0.24.1-5.fc38 fedora 137 k
package-notes-srpm-macros noarch 0.5-6.fc38 fedora 11 k
pam x86_64 1.5.2-15.fc38 fedora 559 k
pam-libs x86_64 1.5.2-15.fc38 fedora 57 k
pcre2 x86_64 10.42-1.fc38 fedora 234 k
pcre2-syntax noarch 10.42-1.fc38 fedora 144 k
perl-srpm-macros noarch 1-47.fc38 fedora 8.2 k
pkgconf x86_64 1.8.0-3.fc37 fedora 41 k
pkgconf-m4 noarch 1.8.0-3.fc37 fedora 14 k
pkgconf-pkg-config x86_64 1.8.0-3.fc37 fedora 10 k
popt x86_64 1.19-1.fc38 fedora 66 k
publicsuffix-list-dafsa noarch 20221208-1.fc38 fedora 59 k
python-srpm-macros noarch 3.11-7.fc38 fedora 26 k
qt5-srpm-macros noarch 5.15.8-1.fc38 fedora 8.0 k
readline x86_64 8.2-2.fc38 fedora 211 k
rpm x86_64 4.18.0-9.fc38 fedora 569 k
rpm-build-libs x86_64 4.18.0-9.fc38 fedora 95 k
rpm-libs x86_64 4.18.0-9.fc38 fedora 312 k
rpm-sequoia x86_64 1.2.0-1.fc38 fedora 829 k
rpmautospec-rpm-macros noarch 0.3.1-1.fc38 fedora 8.8 k
rust-srpm-macros noarch 23-1.fc38 fedora 9.4 k
setup noarch 2.14.3-1.fc38 fedora 152 k
sqlite-libs x86_64 3.40.1-1.fc38 fedora 661 k
systemd-libs x86_64 252.4-598.fc38 fedora 632 k
tzdata noarch 2022g-1.fc38 fedora 716 k
util-linux-core x86_64 2.38.1-3.fc38 fedora 470 k
xxhash-libs x86_64 0.8.1-3.fc37 fedora 41 k
xz-libs x86_64 5.2.9-1.fc38 fedora 93 k
zip x86_64 3.0-35.fc38 fedora 259 k
zlib x86_64 1.2.13-2.fc38 fedora 94 k
zstd x86_64 1.5.2-3.fc37 fedora 447 k
Installing Groups:
Buildsystem building group
Transaction Summary
================================================================================
Install 153 Packages
Total download size: 52 M
Installed size: 181 M
Downloading Packages:
(1/153): crypto-policies-20221215-2.gita4c31a3. 2.1 MB/s | 64 kB 00:00
(2/153): audit-libs-3.0.9-3.fc38.x86_64.rpm 3.7 MB/s | 117 kB 00:00
(3/153): curl-7.87.0-3.fc38.x86_64.rpm 10 MB/s | 347 kB 00:00
(4/153): file-5.42-5.fc38.x86_64.rpm 18 MB/s | 49 kB 00:00
(5/153): file-libs-5.42-5.fc38.x86_64.rpm 150 MB/s | 676 kB 00:00
(6/153): glibc-common-2.36.9000-23.fc38.x86_64. 76 MB/s | 307 kB 00:00
(7/153): glibc-2.36.9000-23.fc38.x86_64.rpm 206 MB/s | 2.1 MB 00:00
(8/153): glibc-minimal-langpack-2.36.9000-23.fc 4.8 MB/s | 34 kB 00:00
(9/153): glibc-gconv-extra-2.36.9000-23.fc38.x8 116 MB/s | 1.5 MB 00:00
(10/153): jansson-2.13.1-6.fc38.x86_64.rpm 8.6 MB/s | 45 kB 00:00
(11/153): krb5-libs-1.20.1-7.fc38.x86_64.rpm 121 MB/s | 722 kB 00:00
(12/153): libbrotli-1.0.9-11.fc38.x86_64.rpm 71 MB/s | 317 kB 00:00
(13/153): libcap-ng-0.8.3-5.fc38.x86_64.rpm 7.8 MB/s | 33 kB 00:00
(14/153): libcurl-7.87.0-3.fc38.x86_64.rpm 125 MB/s | 304 kB 00:00
(15/153): libnghttp2-1.51.0-2.fc38.x86_64.rpm 30 MB/s | 76 kB 00:00
(16/153): libevent-2.1.12-8.fc38.x86_64.rpm 61 MB/s | 258 kB 00:00
(17/153): libpsl-0.21.2-2.fc38.x86_64.rpm 21 MB/s | 66 kB 00:00
(18/153): libpwquality-1.4.5-2.fc38.x86_64.rpm 39 MB/s | 108 kB 00:00
(19/153): libxml2-2.10.3-3.fc38.x86_64.rpm 162 MB/s | 701 kB 00:00
(20/153): ansible-srpm-macros-1-8.1.fc38.noarch 42 kB/s | 8.6 kB 00:00
(21/153): authselect-1.4.2-1.fc38.x86_64.rpm 699 kB/s | 144 kB 00:00
(22/153): alternatives-1.21-1.fc38.x86_64.rpm 180 kB/s | 38 kB 00:00
(23/153): authselect-libs-1.4.2-1.fc38.x86_64.r 66 MB/s | 250 kB 00:00
(24/153): basesystem-11-14.fc37.noarch.rpm 1.5 MB/s | 7.0 kB 00:00
(25/153): bash-5.2.15-1.fc38.x86_64.rpm 263 MB/s | 1.8 MB 00:00
(26/153): binutils-gold-2.39-6.fc38.x86_64.rpm 130 MB/s | 777 kB 00:00
(27/153): bzip2-1.0.8-12.fc37.x86_64.rpm 13 MB/s | 52 kB 00:00
(28/153): bzip2-libs-1.0.8-12.fc37.x86_64.rpm 9.1 MB/s | 41 kB 00:00
(29/153): ca-certificates-2022.2.54-5.fc37.noar 132 MB/s | 829 kB 00:00
(30/153): coreutils-9.1-10.fc38.x86_64.rpm 107 MB/s | 1.1 MB 00:00
(31/153): cpio-2.13-13.fc38.x86_64.rpm 33 MB/s | 276 kB 00:00
(32/153): binutils-2.39-6.fc38.x86_64.rpm 137 MB/s | 5.5 MB 00:00
(33/153): coreutils-common-9.1-10.fc38.x86_64.r 78 MB/s | 2.0 MB 00:00
(34/153): cracklib-2.9.7-30.fc38.x86_64.rpm 9.8 MB/s | 92 kB 00:00
(35/153): debugedit-5.0-5.fc37.x86_64.rpm 28 MB/s | 77 kB 00:00
(36/153): diffutils-3.9-1.fc38.x86_64.rpm 103 MB/s | 397 kB 00:00
(37/153): cyrus-sasl-lib-2.1.28-8.fc38.x86_64.r 129 MB/s | 792 kB 00:00
(38/153): dwz-0.15-1.fc38.x86_64.rpm 27 MB/s | 136 kB 00:00
(39/153): ed-1.19-1.fc38.x86_64.rpm 19 MB/s | 78 kB 00:00
(40/153): efi-srpm-macros-5-6.fc37.noarch.rpm 5.4 MB/s | 22 kB 00:00
(41/153): elfutils-debuginfod-client-0.188-3.fc 6.3 MB/s | 40 kB 00:00
(42/153): elfutils-0.188-3.fc38.x86_64.rpm 66 MB/s | 529 kB 00:00
(43/153): elfutils-default-yama-scope-0.188-3.f 2.5 MB/s | 15 kB 00:00
(44/153): elfutils-libelf-0.188-3.fc38.x86_64.r 57 MB/s | 196 kB 00:00
(45/153): elfutils-libs-0.188-3.fc38.x86_64.rpm 77 MB/s | 257 kB 00:00
(46/153): fedora-gpg-keys-38-0.3.noarch.rpm 38 MB/s | 125 kB 00:00
(47/153): fedora-release-38-0.15.noarch.rpm 7.4 MB/s | 11 kB 00:00
(48/153): fedora-release-common-38-0.15.noarch. 16 MB/s | 21 kB 00:00
(49/153): fedora-release-identity-basic-38-0.15 6.3 MB/s | 12 kB 00:00
(50/153): fedora-repos-38-0.3.noarch.rpm 5.8 MB/s | 10 kB 00:00
(51/153): fedora-repos-rawhide-38-0.3.noarch.rp 7.9 MB/s | 9.7 kB 00:00
(52/153): fonts-srpm-macros-2.0.5-10.fc38.noarc 11 MB/s | 26 kB 00:00
(53/153): findutils-4.9.0-2.fc37.x86_64.rpm 99 MB/s | 492 kB 00:00
(54/153): filesystem-3.18-2.fc37.x86_64.rpm 159 MB/s | 1.1 MB 00:00
(55/153): fpc-srpm-macros-1.3-6.fc37.noarch.rpm 1.6 MB/s | 7.7 kB 00:00
(56/153): gawk-5.1.1-4.fc37.x86_64.rpm 204 MB/s | 1.0 MB 00:00
(57/153): gdbm-libs-1.23-2.fc37.x86_64.rpm 16 MB/s | 56 kB 00:00
(58/153): ghc-srpm-macros-1.5.0-7.fc37.noarch.r 1.8 MB/s | 7.8 kB 00:00
(59/153): gmp-6.2.1-3.fc37.x86_64.rpm 81 MB/s | 315 kB 00:00
(60/153): gnat-srpm-macros-5-1.fc38.noarch.rpm 3.8 MB/s | 8.4 kB 00:00
(61/153): gdb-minimal-12.1-10.fc38.x86_64.rpm 208 MB/s | 3.7 MB 00:00
(62/153): go-srpm-macros-3.2.0-1.fc38.noarch.rp 4.3 MB/s | 27 kB 00:00
(63/153): grep-3.8-2.fc38.x86_64.rpm 51 MB/s | 292 kB 00:00
(64/153): gzip-1.12-2.fc37.x86_64.rpm 90 MB/s | 166 kB 00:00
(65/153): info-7.0.1-1.fc38.x86_64.rpm 76 MB/s | 181 kB 00:00
(66/153): keyutils-libs-1.6.1-5.fc37.x86_64.rpm 17 MB/s | 31 kB 00:00
(67/153): kernel-srpm-macros-1.0-15.fc37.noarch 2.7 MB/s | 9.4 kB 00:00
(68/153): libacl-2.3.1-4.fc37.x86_64.rpm 16 MB/s | 23 kB 00:00
(69/153): libarchive-3.6.1-3.fc38.x86_64.rpm 147 MB/s | 397 kB 00:00
(70/153): libattr-2.5.1-5.fc37.x86_64.rpm 7.0 MB/s | 18 kB 00:00
(71/153): libblkid-2.38.1-3.fc38.x86_64.rpm 39 MB/s | 106 kB 00:00
(72/153): libcom_err-1.46.5-3.fc37.x86_64.rpm 20 MB/s | 25 kB 00:00
(73/153): libcap-2.48-5.fc37.x86_64.rpm 34 MB/s | 67 kB 00:00
(74/153): libeconf-0.4.0-4.fc37.x86_64.rpm 11 MB/s | 27 kB 00:00
(75/153): libfdisk-2.38.1-3.fc38.x86_64.rpm 31 MB/s | 160 kB 00:00
(76/153): libdb-5.3.28-54.fc38.x86_64.rpm 93 MB/s | 764 kB 00:00
(77/153): libffi-3.4.4-1.fc38.x86_64.rpm 8.1 MB/s | 38 kB 00:00
(78/153): libgcc-13.0.1-0.1.fc38.x86_64.rpm 46 MB/s | 93 kB 00:00
(79/153): libgomp-13.0.1-0.1.fc38.x86_64.rpm 85 MB/s | 300 kB 00:00
(80/153): libidn2-2.3.4-1.fc38.x86_64.rpm 41 MB/s | 160 kB 00:00
(81/153): libmount-2.38.1-3.fc38.x86_64.rpm 31 MB/s | 135 kB 00:00
(82/153): libpkgconf-1.8.0-3.fc37.x86_64.rpm 14 MB/s | 36 kB 00:00
(83/153): libnsl2-2.0.0-4.fc37.x86_64.rpm 9.4 MB/s | 30 kB 00:00
(84/153): libselinux-3.5-0.rc1.1.fc38.1.x86_64. 21 MB/s | 86 kB 00:00
(85/153): libsemanage-3.5-0.rc1.1.fc38.x86_64.r 27 MB/s | 119 kB 00:00
(86/153): libsepol-3.5-0.rc1.1.fc38.x86_64.rpm 60 MB/s | 322 kB 00:00
(87/153): libsigsegv-2.14-3.fc37.x86_64.rpm 5.7 MB/s | 27 kB 00:00
(88/153): libsmartcols-2.38.1-3.fc38.x86_64.rpm 23 MB/s | 64 kB 00:00
(89/153): libssh-0.10.4-2.fc38.x86_64.rpm 57 MB/s | 209 kB 00:00
(90/153): libssh-config-0.10.4-2.fc38.noarch.rp 2.3 MB/s | 8.8 kB 00:00
(91/153): libtasn1-4.19.0-1.fc38.x86_64.rpm 25 MB/s | 75 kB 00:00
(92/153): libtirpc-1.3.3-0.fc37.x86_64.rpm 30 MB/s | 93 kB 00:00
(93/153): libstdc++-13.0.1-0.1.fc38.x86_64.rpm 101 MB/s | 844 kB 00:00
(94/153): libunistring-1.0-2.fc37.x86_64.rpm 119 MB/s | 549 kB 00:00
(95/153): libutempter-1.2.1-7.fc37.x86_64.rpm 8.0 MB/s | 26 kB 00:00
(96/153): libuuid-2.38.1-3.fc38.x86_64.rpm 12 MB/s | 27 kB 00:00
(97/153): libverto-0.3.2-4.fc37.x86_64.rpm 10 MB/s | 21 kB 00:00
(98/153): libxcrypt-4.4.33-5.fc38.x86_64.rpm 45 MB/s | 120 kB 00:00
(99/153): lua-libs-5.4.4-7.fc38.x86_64.rpm 60 MB/s | 131 kB 00:00
(100/153): libzstd-1.5.2-3.fc37.x86_64.rpm 68 MB/s | 294 kB 00:00
(101/153): lua-srpm-macros-1-7.fc37.noarch.rpm 3.1 MB/s | 8.8 kB 00:00
(102/153): lz4-libs-1.9.4-1.fc38.x86_64.rpm 42 MB/s | 67 kB 00:00
(103/153): mpfr-4.1.1-2.fc38.x86_64.rpm 199 MB/s | 598 kB 00:00
(104/153): ncurses-base-6.4-2.20230114.fc38.noa 21 MB/s | 87 kB 00:00
(105/153): ncurses-libs-6.4-2.20230114.fc38.x86 74 MB/s | 333 kB 00:00
(106/153): nettle-3.8-2.fc37.x86_64.rpm 163 MB/s | 414 kB 00:00
(107/153): nim-srpm-macros-3-7.fc37.noarch.rpm 7.4 MB/s | 8.4 kB 00:00
(108/153): ocaml-srpm-macros-7-2.fc37.noarch.rp 8.4 MB/s | 13 kB 00:00
(109/153): openblas-srpm-macros-2-12.fc37.noarc 5.2 MB/s | 7.5 kB 00:00
(110/153): openldap-2.6.3-1.fc38.x86_64.rpm 77 MB/s | 254 kB 00:00
(111/153): p11-kit-0.24.1-5.fc38.x86_64.rpm 80 MB/s | 376 kB 00:00
(112/153): openssl-libs-3.0.7-3.fc38.x86_64.rpm 224 MB/s | 2.1 MB 00:00
(113/153): p11-kit-trust-0.24.1-5.fc38.x86_64.r 23 MB/s | 137 kB 00:00
(114/153): package-notes-srpm-macros-0.5-6.fc38 3.1 MB/s | 11 kB 00:00
(115/153): pam-1.5.2-15.fc38.x86_64.rpm 151 MB/s | 559 kB 00:00
(116/153): pam-libs-1.5.2-15.fc38.x86_64.rpm 16 MB/s | 57 kB 00:00
(117/153): patch-2.7.6-17.fc37.x86_64.rpm 29 MB/s | 124 kB 00:00
(118/153): pcre2-10.42-1.fc38.x86_64.rpm 49 MB/s | 234 kB 00:00
(119/153): pcre2-syntax-10.42-1.fc38.noarch.rpm 31 MB/s | 144 kB 00:00
(120/153): perl-srpm-macros-1-47.fc38.noarch.rp 1.9 MB/s | 8.2 kB 00:00
(121/153): pkgconf-1.8.0-3.fc37.x86_64.rpm 20 MB/s | 41 kB 00:00
(122/153): pkgconf-m4-1.8.0-3.fc37.noarch.rpm 7.4 MB/s | 14 kB 00:00
(123/153): pkgconf-pkg-config-1.8.0-3.fc37.x86_ 4.1 MB/s | 10 kB 00:00
(124/153): popt-1.19-1.fc38.x86_64.rpm 30 MB/s | 66 kB 00:00
(125/153): publicsuffix-list-dafsa-20221208-1.f 25 MB/s | 59 kB 00:00
(126/153): python-srpm-macros-3.11-7.fc38.noarc 12 MB/s | 26 kB 00:00
(127/153): qt5-srpm-macros-5.15.8-1.fc38.noarch 6.4 MB/s | 8.0 kB 00:00
(128/153): readline-8.2-2.fc38.x86_64.rpm 99 MB/s | 211 kB 00:00
(129/153): redhat-rpm-config-245-1.fc38.noarch. 30 MB/s | 82 kB 00:00
(130/153): rpm-4.18.0-9.fc38.x86_64.rpm 140 MB/s | 569 kB 00:00
(131/153): rpm-build-4.18.0-9.fc38.x86_64.rpm 21 MB/s | 77 kB 00:00
(132/153): rpm-build-libs-4.18.0-9.fc38.x86_64. 25 MB/s | 95 kB 00:00
(133/153): rpm-libs-4.18.0-9.fc38.x86_64.rpm 85 MB/s | 312 kB 00:00
(134/153): rpmautospec-rpm-macros-0.3.1-1.fc38. 3.0 MB/s | 8.8 kB 00:00
(135/153): rpm-sequoia-1.2.0-1.fc38.x86_64.rpm 131 MB/s | 829 kB 00:00
(136/153): rust-srpm-macros-23-1.fc38.noarch.rp 2.1 MB/s | 9.4 kB 00:00
(137/153): sed-4.8-11.fc37.x86_64.rpm 73 MB/s | 306 kB 00:00
(138/153): setup-2.14.3-1.fc38.noarch.rpm 24 MB/s | 152 kB 00:00
(139/153): sqlite-libs-3.40.1-1.fc38.x86_64.rpm 82 MB/s | 661 kB 00:00
(140/153): tar-1.34-5.fc38.x86_64.rpm 197 MB/s | 885 kB 00:00
(141/153): systemd-libs-252.4-598.fc38.x86_64.r 58 MB/s | 632 kB 00:00
(142/153): tzdata-2022g-1.fc38.noarch.rpm 121 MB/s | 716 kB 00:00
(143/153): unzip-6.0-58.fc38.x86_64.rpm 37 MB/s | 182 kB 00:00
(144/153): util-linux-core-2.38.1-3.fc38.x86_64 118 MB/s | 470 kB 00:00
(145/153): which-2.21-36.fc38.x86_64.rpm 23 MB/s | 41 kB 00:00
(146/153): xxhash-libs-0.8.1-3.fc37.x86_64.rpm 25 MB/s | 41 kB 00:00
(147/153): shadow-utils-4.13-3.fc38.x86_64.rpm 38 MB/s | 1.3 MB 00:00
(148/153): xz-5.2.9-1.fc38.x86_64.rpm 86 MB/s | 306 kB 00:00
(149/153): xz-libs-5.2.9-1.fc38.x86_64.rpm 44 MB/s | 93 kB 00:00
(150/153): zip-3.0-35.fc38.x86_64.rpm 61 MB/s | 259 kB 00:00
(151/153): zlib-1.2.13-2.fc38.x86_64.rpm 24 MB/s | 94 kB 00:00
(152/153): zstd-1.5.2-3.fc37.x86_64.rpm 118 MB/s | 447 kB 00:00
(153/153): util-linux-2.38.1-3.fc38.x86_64.rpm 70 MB/s | 2.3 MB 00:00
--------------------------------------------------------------------------------
Total 64 MB/s | 52 MB 00:00
fedora 1.6 MB/s | 1.6 kB 00:00
Importing GPG key 0xEB10B464:
Userid : "Fedora (38) <fedora-38-primary@fedoraproject.org>"
Fingerprint: 6A51 BBAB BA3D 5467 B617 1221 809A 8D7C EB10 B464
From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-38-primary
Key imported successfully
fedora 1.6 MB/s | 1.6 kB 00:00
GPG key at file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-38-primary (0xEB10B464) is already installed
fedora 1.6 MB/s | 1.6 kB 00:00
Importing GPG key 0x5323552A:
Userid : "Fedora (37) <fedora-37-primary@fedoraproject.org>"
Fingerprint: ACB5 EE4E 831C 74BB 7C16 8D27 F55A D3FB 5323 552A
From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-37-primary
Key imported successfully
Running transaction check
Transaction check succeeded.
Running transaction test
Transaction test succeeded.
Running transaction
Running scriptlet: filesystem-3.18-2.fc37.x86_64 1/1
Preparing : 1/1
Installing : libgcc-13.0.1-0.1.fc38.x86_64 1/153
Running scriptlet: libgcc-13.0.1-0.1.fc38.x86_64 1/153
Installing : crypto-policies-20221215-2.gita4c31a3.fc38.noarc 2/153
Running scriptlet: crypto-policies-20221215-2.gita4c31a3.fc38.noarc 2/153
Installing : tzdata-2022g-1.fc38.noarch 3/153
Installing : fedora-release-identity-basic-38-0.15.noarch 4/153
Installing : rust-srpm-macros-23-1.fc38.noarch 5/153
Installing : qt5-srpm-macros-5.15.8-1.fc38.noarch 6/153
Installing : publicsuffix-list-dafsa-20221208-1.fc38.noarch 7/153
Installing : pkgconf-m4-1.8.0-3.fc37.noarch 8/153
Installing : perl-srpm-macros-1-47.fc38.noarch 9/153
Installing : pcre2-syntax-10.42-1.fc38.noarch 10/153
Installing : package-notes-srpm-macros-0.5-6.fc38.noarch 11/153
Installing : openblas-srpm-macros-2-12.fc37.noarch 12/153
Installing : ocaml-srpm-macros-7-2.fc37.noarch 13/153
Installing : nim-srpm-macros-3-7.fc37.noarch 14/153
Installing : ncurses-base-6.4-2.20230114.fc38.noarch 15/153
Installing : libssh-config-0.10.4-2.fc38.noarch 16/153
Installing : kernel-srpm-macros-1.0-15.fc37.noarch 17/153
Installing : gnat-srpm-macros-5-1.fc38.noarch 18/153
Installing : ghc-srpm-macros-1.5.0-7.fc37.noarch 19/153
Installing : fpc-srpm-macros-1.3-6.fc37.noarch 20/153
Installing : fedora-gpg-keys-38-0.3.noarch 21/153
Installing : fedora-release-38-0.15.noarch 22/153
Installing : fedora-release-common-38-0.15.noarch 23/153
Installing : fedora-repos-rawhide-38-0.3.noarch 24/153
Installing : fedora-repos-38-0.3.noarch 25/153
Installing : setup-2.14.3-1.fc38.noarch 26/153
warning: /etc/hosts created as /etc/hosts.rpmnew
Running scriptlet: setup-2.14.3-1.fc38.noarch 26/153
Installing : filesystem-3.18-2.fc37.x86_64 27/153
Installing : basesystem-11-14.fc37.noarch 28/153
Installing : glibc-gconv-extra-2.36.9000-23.fc38.x86_64 29/153
Running scriptlet: glibc-gconv-extra-2.36.9000-23.fc38.x86_64 29/153
Installing : glibc-minimal-langpack-2.36.9000-23.fc38.x86_64 30/153
Installing : glibc-common-2.36.9000-23.fc38.x86_64 31/153
Running scriptlet: glibc-2.36.9000-23.fc38.x86_64 32/153
Installing : glibc-2.36.9000-23.fc38.x86_64 32/153
Running scriptlet: glibc-2.36.9000-23.fc38.x86_64 32/153
Installing : ncurses-libs-6.4-2.20230114.fc38.x86_64 33/153
Installing : bash-5.2.15-1.fc38.x86_64 34/153
Running scriptlet: bash-5.2.15-1.fc38.x86_64 34/153
Installing : zlib-1.2.13-2.fc38.x86_64 35/153
Installing : xz-libs-5.2.9-1.fc38.x86_64 36/153
Installing : bzip2-libs-1.0.8-12.fc37.x86_64 37/153
Installing : elfutils-libelf-0.188-3.fc38.x86_64 38/153
Installing : gmp-1:6.2.1-3.fc37.x86_64 39/153
Installing : libstdc++-13.0.1-0.1.fc38.x86_64 40/153
Installing : libuuid-2.38.1-3.fc38.x86_64 41/153
Installing : libzstd-1.5.2-3.fc37.x86_64 42/153
Installing : popt-1.19-1.fc38.x86_64 43/153
Installing : libblkid-2.38.1-3.fc38.x86_64 44/153
Installing : readline-8.2-2.fc38.x86_64 45/153
Installing : libattr-2.5.1-5.fc37.x86_64 46/153
Installing : libacl-2.3.1-4.fc37.x86_64 47/153
Installing : libcap-2.48-5.fc37.x86_64 48/153
Installing : libxcrypt-4.4.33-5.fc38.x86_64 49/153
Installing : lz4-libs-1.9.4-1.fc38.x86_64 50/153
Installing : systemd-libs-252.4-598.fc38.x86_64 51/153
Installing : mpfr-4.1.1-2.fc38.x86_64 52/153
Installing : dwz-0.15-1.fc38.x86_64 53/153
Installing : unzip-6.0-58.fc38.x86_64 54/153
Installing : file-libs-5.42-5.fc38.x86_64 55/153
Installing : file-5.42-5.fc38.x86_64 56/153
Installing : sqlite-libs-3.40.1-1.fc38.x86_64 57/153
Installing : libcap-ng-0.8.3-5.fc38.x86_64 58/153
Installing : audit-libs-3.0.9-3.fc38.x86_64 59/153
Installing : alternatives-1.21-1.fc38.x86_64 60/153
Installing : libcom_err-1.46.5-3.fc37.x86_64 61/153
Installing : libeconf-0.4.0-4.fc37.x86_64 62/153
Installing : pam-libs-1.5.2-15.fc38.x86_64 63/153
Installing : libsepol-3.5-0.rc1.1.fc38.x86_64 64/153
Installing : libsmartcols-2.38.1-3.fc38.x86_64 65/153
Installing : libunistring-1.0-2.fc37.x86_64 66/153
Installing : libidn2-2.3.4-1.fc38.x86_64 67/153
Installing : lua-libs-5.4.4-7.fc38.x86_64 68/153
Installing : pcre2-10.42-1.fc38.x86_64 69/153
Installing : libselinux-3.5-0.rc1.1.fc38.1.x86_64 70/153
Installing : sed-4.8-11.fc37.x86_64 71/153
Installing : grep-3.8-2.fc38.x86_64 72/153
Installing : findutils-1:4.9.0-2.fc37.x86_64 73/153
Installing : xz-5.2.9-1.fc38.x86_64 74/153
Installing : libmount-2.38.1-3.fc38.x86_64 75/153
Installing : util-linux-core-2.38.1-3.fc38.x86_64 76/153
Installing : libsemanage-3.5-0.rc1.1.fc38.x86_64 77/153
Installing : shadow-utils-2:4.13-3.fc38.x86_64 78/153
Running scriptlet: libutempter-1.2.1-7.fc37.x86_64 79/153
Installing : libutempter-1.2.1-7.fc37.x86_64 79/153
Installing : tar-2:1.34-5.fc38.x86_64 80/153
Installing : libpsl-0.21.2-2.fc38.x86_64 81/153
Installing : zip-3.0-35.fc38.x86_64 82/153
Installing : zstd-1.5.2-3.fc37.x86_64 83/153
Installing : libfdisk-2.38.1-3.fc38.x86_64 84/153
Installing : nettle-3.8-2.fc37.x86_64 85/153
Installing : rpm-sequoia-1.2.0-1.fc38.x86_64 86/153
Installing : rpm-libs-4.18.0-9.fc38.x86_64 87/153
Installing : bzip2-1.0.8-12.fc37.x86_64 88/153
Installing : libxml2-2.10.3-3.fc38.x86_64 89/153
Installing : ed-1.19-1.fc38.x86_64 90/153
Installing : patch-2.7.6-17.fc37.x86_64 91/153
Installing : elfutils-default-yama-scope-0.188-3.fc38.noarch 92/153
Running scriptlet: elfutils-default-yama-scope-0.188-3.fc38.noarch 92/153
Installing : jansson-2.13.1-6.fc38.x86_64 93/153
Installing : libbrotli-1.0.9-11.fc38.x86_64 94/153
Installing : libnghttp2-1.51.0-2.fc38.x86_64 95/153
Installing : cpio-2.13-13.fc38.x86_64 96/153
Installing : diffutils-3.9-1.fc38.x86_64 97/153
Installing : gdbm-libs-1:1.23-2.fc37.x86_64 98/153
Installing : cyrus-sasl-lib-2.1.28-8.fc38.x86_64 99/153
Installing : keyutils-libs-1.6.1-5.fc37.x86_64 100/153
Installing : libdb-5.3.28-54.fc38.x86_64 101/153
Installing : libffi-3.4.4-1.fc38.x86_64 102/153
Installing : p11-kit-0.24.1-5.fc38.x86_64 103/153
Installing : libgomp-13.0.1-0.1.fc38.x86_64 104/153
Installing : libpkgconf-1.8.0-3.fc37.x86_64 105/153
Installing : pkgconf-1.8.0-3.fc37.x86_64 106/153
Installing : pkgconf-pkg-config-1.8.0-3.fc37.x86_64 107/153
Installing : libsigsegv-2.14-3.fc37.x86_64 108/153
Installing : gawk-5.1.1-4.fc37.x86_64 109/153
Installing : libtasn1-4.19.0-1.fc38.x86_64 110/153
Installing : p11-kit-trust-0.24.1-5.fc38.x86_64 111/153
Running scriptlet: p11-kit-trust-0.24.1-5.fc38.x86_64 111/153
Installing : libverto-0.3.2-4.fc37.x86_64 112/153
Installing : xxhash-libs-0.8.1-3.fc37.x86_64 113/153
Installing : coreutils-common-9.1-10.fc38.x86_64 114/153
Installing : openssl-libs-1:3.0.7-3.fc38.x86_64 115/153
Installing : coreutils-9.1-10.fc38.x86_64 116/153
Running scriptlet: ca-certificates-2022.2.54-5.fc37.noarch 117/153
Installing : ca-certificates-2022.2.54-5.fc37.noarch 117/153
Running scriptlet: ca-certificates-2022.2.54-5.fc37.noarch 117/153
Installing : krb5-libs-1.20.1-7.fc38.x86_64 118/153
Installing : libtirpc-1.3.3-0.fc37.x86_64 119/153
Running scriptlet: authselect-libs-1.4.2-1.fc38.x86_64 120/153
Installing : authselect-libs-1.4.2-1.fc38.x86_64 120/153
Installing : gzip-1.12-2.fc37.x86_64 121/153
Installing : cracklib-2.9.7-30.fc38.x86_64 122/153
Installing : libpwquality-1.4.5-2.fc38.x86_64 123/153
Installing : authselect-1.4.2-1.fc38.x86_64 124/153
Installing : libnsl2-2.0.0-4.fc37.x86_64 125/153
Installing : pam-1.5.2-15.fc38.x86_64 126/153
Installing : libssh-0.10.4-2.fc38.x86_64 127/153
Installing : libevent-2.1.12-8.fc38.x86_64 128/153
Installing : openldap-2.6.3-1.fc38.x86_64 129/153
Installing : libcurl-7.87.0-3.fc38.x86_64 130/153
Installing : elfutils-libs-0.188-3.fc38.x86_64 131/153
Installing : elfutils-debuginfod-client-0.188-3.fc38.x86_64 132/153
Installing : binutils-gold-2.39-6.fc38.x86_64 133/153
Installing : binutils-2.39-6.fc38.x86_64 134/153
Running scriptlet: binutils-2.39-6.fc38.x86_64 134/153
Installing : elfutils-0.188-3.fc38.x86_64 135/153
Installing : gdb-minimal-12.1-10.fc38.x86_64 136/153
Installing : debugedit-5.0-5.fc37.x86_64 137/153
Installing : rpm-build-libs-4.18.0-9.fc38.x86_64 138/153
Installing : curl-7.87.0-3.fc38.x86_64 139/153
Installing : libarchive-3.6.1-3.fc38.x86_64 140/153
Running scriptlet: rpm-4.18.0-9.fc38.x86_64 141/153
Installing : rpm-4.18.0-9.fc38.x86_64 141/153
Installing : efi-srpm-macros-5-6.fc37.noarch 142/153
Installing : lua-srpm-macros-1-7.fc37.noarch 143/153
Installing : rpmautospec-rpm-macros-0.3.1-1.fc38.noarch 144/153
Installing : ansible-srpm-macros-1-8.1.fc38.noarch 145/153
Installing : fonts-srpm-macros-1:2.0.5-10.fc38.noarch 146/153
Installing : go-srpm-macros-3.2.0-1.fc38.noarch 147/153
Installing : python-srpm-macros-3.11-7.fc38.noarch 148/153
Installing : redhat-rpm-config-245-1.fc38.noarch 149/153
Installing : rpm-build-4.18.0-9.fc38.x86_64 150/153
Installing : util-linux-2.38.1-3.fc38.x86_64 151/153
Installing : which-2.21-36.fc38.x86_64 152/153
Installing : info-7.0.1-1.fc38.x86_64 153/153
Running scriptlet: filesystem-3.18-2.fc37.x86_64 153/153
Running scriptlet: ca-certificates-2022.2.54-5.fc37.noarch 153/153
Running scriptlet: authselect-libs-1.4.2-1.fc38.x86_64 153/153
Running scriptlet: rpm-4.18.0-9.fc38.x86_64 153/153
Running scriptlet: info-7.0.1-1.fc38.x86_64 153/153
Verifying : audit-libs-3.0.9-3.fc38.x86_64 1/153
Verifying : crypto-policies-20221215-2.gita4c31a3.fc38.noarc 2/153
Verifying : curl-7.87.0-3.fc38.x86_64 3/153
Verifying : file-5.42-5.fc38.x86_64 4/153
Verifying : file-libs-5.42-5.fc38.x86_64 5/153
Verifying : glibc-2.36.9000-23.fc38.x86_64 6/153
Verifying : glibc-common-2.36.9000-23.fc38.x86_64 7/153
Verifying : glibc-gconv-extra-2.36.9000-23.fc38.x86_64 8/153
Verifying : glibc-minimal-langpack-2.36.9000-23.fc38.x86_64 9/153
Verifying : jansson-2.13.1-6.fc38.x86_64 10/153
Verifying : krb5-libs-1.20.1-7.fc38.x86_64 11/153
Verifying : libbrotli-1.0.9-11.fc38.x86_64 12/153
Verifying : libcap-ng-0.8.3-5.fc38.x86_64 13/153
Verifying : libcurl-7.87.0-3.fc38.x86_64 14/153
Verifying : libevent-2.1.12-8.fc38.x86_64 15/153
Verifying : libnghttp2-1.51.0-2.fc38.x86_64 16/153
Verifying : libpsl-0.21.2-2.fc38.x86_64 17/153
Verifying : libpwquality-1.4.5-2.fc38.x86_64 18/153
Verifying : libxml2-2.10.3-3.fc38.x86_64 19/153
Verifying : alternatives-1.21-1.fc38.x86_64 20/153
Verifying : ansible-srpm-macros-1-8.1.fc38.noarch 21/153
Verifying : authselect-1.4.2-1.fc38.x86_64 22/153
Verifying : authselect-libs-1.4.2-1.fc38.x86_64 23/153
Verifying : basesystem-11-14.fc37.noarch 24/153
Verifying : bash-5.2.15-1.fc38.x86_64 25/153
Verifying : binutils-2.39-6.fc38.x86_64 26/153
Verifying : binutils-gold-2.39-6.fc38.x86_64 27/153
Verifying : bzip2-1.0.8-12.fc37.x86_64 28/153
Verifying : bzip2-libs-1.0.8-12.fc37.x86_64 29/153
Verifying : ca-certificates-2022.2.54-5.fc37.noarch 30/153
Verifying : coreutils-9.1-10.fc38.x86_64 31/153
Verifying : coreutils-common-9.1-10.fc38.x86_64 32/153
Verifying : cpio-2.13-13.fc38.x86_64 33/153
Verifying : cracklib-2.9.7-30.fc38.x86_64 34/153
Verifying : cyrus-sasl-lib-2.1.28-8.fc38.x86_64 35/153
Verifying : debugedit-5.0-5.fc37.x86_64 36/153
Verifying : diffutils-3.9-1.fc38.x86_64 37/153
Verifying : dwz-0.15-1.fc38.x86_64 38/153
Verifying : ed-1.19-1.fc38.x86_64 39/153
Verifying : efi-srpm-macros-5-6.fc37.noarch 40/153
Verifying : elfutils-0.188-3.fc38.x86_64 41/153
Verifying : elfutils-debuginfod-client-0.188-3.fc38.x86_64 42/153
Verifying : elfutils-default-yama-scope-0.188-3.fc38.noarch 43/153
Verifying : elfutils-libelf-0.188-3.fc38.x86_64 44/153
Verifying : elfutils-libs-0.188-3.fc38.x86_64 45/153
Verifying : fedora-gpg-keys-38-0.3.noarch 46/153
Verifying : fedora-release-38-0.15.noarch 47/153
Verifying : fedora-release-common-38-0.15.noarch 48/153
Verifying : fedora-release-identity-basic-38-0.15.noarch 49/153
Verifying : fedora-repos-38-0.3.noarch 50/153
Verifying : fedora-repos-rawhide-38-0.3.noarch 51/153
Verifying : filesystem-3.18-2.fc37.x86_64 52/153
Verifying : findutils-1:4.9.0-2.fc37.x86_64 53/153
Verifying : fonts-srpm-macros-1:2.0.5-10.fc38.noarch 54/153
Verifying : fpc-srpm-macros-1.3-6.fc37.noarch 55/153
Verifying : gawk-5.1.1-4.fc37.x86_64 56/153
Verifying : gdb-minimal-12.1-10.fc38.x86_64 57/153
Verifying : gdbm-libs-1:1.23-2.fc37.x86_64 58/153
Verifying : ghc-srpm-macros-1.5.0-7.fc37.noarch 59/153
Verifying : gmp-1:6.2.1-3.fc37.x86_64 60/153
Verifying : gnat-srpm-macros-5-1.fc38.noarch 61/153
Verifying : go-srpm-macros-3.2.0-1.fc38.noarch 62/153
Verifying : grep-3.8-2.fc38.x86_64 63/153
Verifying : gzip-1.12-2.fc37.x86_64 64/153
Verifying : info-7.0.1-1.fc38.x86_64 65/153
Verifying : kernel-srpm-macros-1.0-15.fc37.noarch 66/153
Verifying : keyutils-libs-1.6.1-5.fc37.x86_64 67/153
Verifying : libacl-2.3.1-4.fc37.x86_64 68/153
Verifying : libarchive-3.6.1-3.fc38.x86_64 69/153
Verifying : libattr-2.5.1-5.fc37.x86_64 70/153
Verifying : libblkid-2.38.1-3.fc38.x86_64 71/153
Verifying : libcap-2.48-5.fc37.x86_64 72/153
Verifying : libcom_err-1.46.5-3.fc37.x86_64 73/153
Verifying : libdb-5.3.28-54.fc38.x86_64 74/153
Verifying : libeconf-0.4.0-4.fc37.x86_64 75/153
Verifying : libfdisk-2.38.1-3.fc38.x86_64 76/153
Verifying : libffi-3.4.4-1.fc38.x86_64 77/153
Verifying : libgcc-13.0.1-0.1.fc38.x86_64 78/153
Verifying : libgomp-13.0.1-0.1.fc38.x86_64 79/153
Verifying : libidn2-2.3.4-1.fc38.x86_64 80/153
Verifying : libmount-2.38.1-3.fc38.x86_64 81/153
Verifying : libnsl2-2.0.0-4.fc37.x86_64 82/153
Verifying : libpkgconf-1.8.0-3.fc37.x86_64 83/153
Verifying : libselinux-3.5-0.rc1.1.fc38.1.x86_64 84/153
Verifying : libsemanage-3.5-0.rc1.1.fc38.x86_64 85/153
Verifying : libsepol-3.5-0.rc1.1.fc38.x86_64 86/153
Verifying : libsigsegv-2.14-3.fc37.x86_64 87/153
Verifying : libsmartcols-2.38.1-3.fc38.x86_64 88/153
Verifying : libssh-0.10.4-2.fc38.x86_64 89/153
Verifying : libssh-config-0.10.4-2.fc38.noarch 90/153
Verifying : libstdc++-13.0.1-0.1.fc38.x86_64 91/153
Verifying : libtasn1-4.19.0-1.fc38.x86_64 92/153
Verifying : libtirpc-1.3.3-0.fc37.x86_64 93/153
Verifying : libunistring-1.0-2.fc37.x86_64 94/153
Verifying : libutempter-1.2.1-7.fc37.x86_64 95/153
Verifying : libuuid-2.38.1-3.fc38.x86_64 96/153
Verifying : libverto-0.3.2-4.fc37.x86_64 97/153
Verifying : libxcrypt-4.4.33-5.fc38.x86_64 98/153
Verifying : libzstd-1.5.2-3.fc37.x86_64 99/153
Verifying : lua-libs-5.4.4-7.fc38.x86_64 100/153
Verifying : lua-srpm-macros-1-7.fc37.noarch 101/153
Verifying : lz4-libs-1.9.4-1.fc38.x86_64 102/153
Verifying : mpfr-4.1.1-2.fc38.x86_64 103/153
Verifying : ncurses-base-6.4-2.20230114.fc38.noarch 104/153
Verifying : ncurses-libs-6.4-2.20230114.fc38.x86_64 105/153
Verifying : nettle-3.8-2.fc37.x86_64 106/153
Verifying : nim-srpm-macros-3-7.fc37.noarch 107/153
Verifying : ocaml-srpm-macros-7-2.fc37.noarch 108/153
Verifying : openblas-srpm-macros-2-12.fc37.noarch 109/153
Verifying : openldap-2.6.3-1.fc38.x86_64 110/153
Verifying : openssl-libs-1:3.0.7-3.fc38.x86_64 111/153
Verifying : p11-kit-0.24.1-5.fc38.x86_64 112/153
Verifying : p11-kit-trust-0.24.1-5.fc38.x86_64 113/153
Verifying : package-notes-srpm-macros-0.5-6.fc38.noarch 114/153
Verifying : pam-1.5.2-15.fc38.x86_64 115/153
Verifying : pam-libs-1.5.2-15.fc38.x86_64 116/153
Verifying : patch-2.7.6-17.fc37.x86_64 117/153
Verifying : pcre2-10.42-1.fc38.x86_64 118/153
Verifying : pcre2-syntax-10.42-1.fc38.noarch 119/153
Verifying : perl-srpm-macros-1-47.fc38.noarch 120/153
Verifying : pkgconf-1.8.0-3.fc37.x86_64 121/153
Verifying : pkgconf-m4-1.8.0-3.fc37.noarch 122/153
Verifying : pkgconf-pkg-config-1.8.0-3.fc37.x86_64 123/153
Verifying : popt-1.19-1.fc38.x86_64 124/153
Verifying : publicsuffix-list-dafsa-20221208-1.fc38.noarch 125/153
Verifying : python-srpm-macros-3.11-7.fc38.noarch 126/153
Verifying : qt5-srpm-macros-5.15.8-1.fc38.noarch 127/153
Verifying : readline-8.2-2.fc38.x86_64 128/153
Verifying : redhat-rpm-config-245-1.fc38.noarch 129/153
Verifying : rpm-4.18.0-9.fc38.x86_64 130/153
Verifying : rpm-build-4.18.0-9.fc38.x86_64 131/153
Verifying : rpm-build-libs-4.18.0-9.fc38.x86_64 132/153
Verifying : rpm-libs-4.18.0-9.fc38.x86_64 133/153
Verifying : rpm-sequoia-1.2.0-1.fc38.x86_64 134/153
Verifying : rpmautospec-rpm-macros-0.3.1-1.fc38.noarch 135/153
Verifying : rust-srpm-macros-23-1.fc38.noarch 136/153
Verifying : sed-4.8-11.fc37.x86_64 137/153
Verifying : setup-2.14.3-1.fc38.noarch 138/153
Verifying : shadow-utils-2:4.13-3.fc38.x86_64 139/153
Verifying : sqlite-libs-3.40.1-1.fc38.x86_64 140/153
Verifying : systemd-libs-252.4-598.fc38.x86_64 141/153
Verifying : tar-2:1.34-5.fc38.x86_64 142/153
Verifying : tzdata-2022g-1.fc38.noarch 143/153
Verifying : unzip-6.0-58.fc38.x86_64 144/153
Verifying : util-linux-2.38.1-3.fc38.x86_64 145/153
Verifying : util-linux-core-2.38.1-3.fc38.x86_64 146/153
Verifying : which-2.21-36.fc38.x86_64 147/153
Verifying : xxhash-libs-0.8.1-3.fc37.x86_64 148/153
Verifying : xz-5.2.9-1.fc38.x86_64 149/153
Verifying : xz-libs-5.2.9-1.fc38.x86_64 150/153
Verifying : zip-3.0-35.fc38.x86_64 151/153
Verifying : zlib-1.2.13-2.fc38.x86_64 152/153
Verifying : zstd-1.5.2-3.fc37.x86_64 153/153
Installed:
alternatives-1.21-1.fc38.x86_64
ansible-srpm-macros-1-8.1.fc38.noarch
audit-libs-3.0.9-3.fc38.x86_64
authselect-1.4.2-1.fc38.x86_64
authselect-libs-1.4.2-1.fc38.x86_64
basesystem-11-14.fc37.noarch
bash-5.2.15-1.fc38.x86_64
binutils-2.39-6.fc38.x86_64
binutils-gold-2.39-6.fc38.x86_64
bzip2-1.0.8-12.fc37.x86_64
bzip2-libs-1.0.8-12.fc37.x86_64
ca-certificates-2022.2.54-5.fc37.noarch
coreutils-9.1-10.fc38.x86_64
coreutils-common-9.1-10.fc38.x86_64
cpio-2.13-13.fc38.x86_64
cracklib-2.9.7-30.fc38.x86_64
crypto-policies-20221215-2.gita4c31a3.fc38.noarch
curl-7.87.0-3.fc38.x86_64
cyrus-sasl-lib-2.1.28-8.fc38.x86_64
debugedit-5.0-5.fc37.x86_64
diffutils-3.9-1.fc38.x86_64
dwz-0.15-1.fc38.x86_64
ed-1.19-1.fc38.x86_64
efi-srpm-macros-5-6.fc37.noarch
elfutils-0.188-3.fc38.x86_64
elfutils-debuginfod-client-0.188-3.fc38.x86_64
elfutils-default-yama-scope-0.188-3.fc38.noarch
elfutils-libelf-0.188-3.fc38.x86_64
elfutils-libs-0.188-3.fc38.x86_64
fedora-gpg-keys-38-0.3.noarch
fedora-release-38-0.15.noarch
fedora-release-common-38-0.15.noarch
fedora-release-identity-basic-38-0.15.noarch
fedora-repos-38-0.3.noarch
fedora-repos-rawhide-38-0.3.noarch
file-5.42-5.fc38.x86_64
file-libs-5.42-5.fc38.x86_64
filesystem-3.18-2.fc37.x86_64
findutils-1:4.9.0-2.fc37.x86_64
fonts-srpm-macros-1:2.0.5-10.fc38.noarch
fpc-srpm-macros-1.3-6.fc37.noarch
gawk-5.1.1-4.fc37.x86_64
gdb-minimal-12.1-10.fc38.x86_64
gdbm-libs-1:1.23-2.fc37.x86_64
ghc-srpm-macros-1.5.0-7.fc37.noarch
glibc-2.36.9000-23.fc38.x86_64
glibc-common-2.36.9000-23.fc38.x86_64
glibc-gconv-extra-2.36.9000-23.fc38.x86_64
glibc-minimal-langpack-2.36.9000-23.fc38.x86_64
gmp-1:6.2.1-3.fc37.x86_64
gnat-srpm-macros-5-1.fc38.noarch
go-srpm-macros-3.2.0-1.fc38.noarch
grep-3.8-2.fc38.x86_64
gzip-1.12-2.fc37.x86_64
info-7.0.1-1.fc38.x86_64
jansson-2.13.1-6.fc38.x86_64
kernel-srpm-macros-1.0-15.fc37.noarch
keyutils-libs-1.6.1-5.fc37.x86_64
krb5-libs-1.20.1-7.fc38.x86_64
libacl-2.3.1-4.fc37.x86_64
libarchive-3.6.1-3.fc38.x86_64
libattr-2.5.1-5.fc37.x86_64
libblkid-2.38.1-3.fc38.x86_64
libbrotli-1.0.9-11.fc38.x86_64
libcap-2.48-5.fc37.x86_64
libcap-ng-0.8.3-5.fc38.x86_64
libcom_err-1.46.5-3.fc37.x86_64
libcurl-7.87.0-3.fc38.x86_64
libdb-5.3.28-54.fc38.x86_64
libeconf-0.4.0-4.fc37.x86_64
libevent-2.1.12-8.fc38.x86_64
libfdisk-2.38.1-3.fc38.x86_64
libffi-3.4.4-1.fc38.x86_64
libgcc-13.0.1-0.1.fc38.x86_64
libgomp-13.0.1-0.1.fc38.x86_64
libidn2-2.3.4-1.fc38.x86_64
libmount-2.38.1-3.fc38.x86_64
libnghttp2-1.51.0-2.fc38.x86_64
libnsl2-2.0.0-4.fc37.x86_64
libpkgconf-1.8.0-3.fc37.x86_64
libpsl-0.21.2-2.fc38.x86_64
libpwquality-1.4.5-2.fc38.x86_64
libselinux-3.5-0.rc1.1.fc38.1.x86_64
libsemanage-3.5-0.rc1.1.fc38.x86_64
libsepol-3.5-0.rc1.1.fc38.x86_64
libsigsegv-2.14-3.fc37.x86_64
libsmartcols-2.38.1-3.fc38.x86_64
libssh-0.10.4-2.fc38.x86_64
libssh-config-0.10.4-2.fc38.noarch
libstdc++-13.0.1-0.1.fc38.x86_64
libtasn1-4.19.0-1.fc38.x86_64
libtirpc-1.3.3-0.fc37.x86_64
libunistring-1.0-2.fc37.x86_64
libutempter-1.2.1-7.fc37.x86_64
libuuid-2.38.1-3.fc38.x86_64
libverto-0.3.2-4.fc37.x86_64
libxcrypt-4.4.33-5.fc38.x86_64
libxml2-2.10.3-3.fc38.x86_64
libzstd-1.5.2-3.fc37.x86_64
lua-libs-5.4.4-7.fc38.x86_64
lua-srpm-macros-1-7.fc37.noarch
lz4-libs-1.9.4-1.fc38.x86_64
mpfr-4.1.1-2.fc38.x86_64
ncurses-base-6.4-2.20230114.fc38.noarch
ncurses-libs-6.4-2.20230114.fc38.x86_64
nettle-3.8-2.fc37.x86_64
nim-srpm-macros-3-7.fc37.noarch
ocaml-srpm-macros-7-2.fc37.noarch
openblas-srpm-macros-2-12.fc37.noarch
openldap-2.6.3-1.fc38.x86_64
openssl-libs-1:3.0.7-3.fc38.x86_64
p11-kit-0.24.1-5.fc38.x86_64
p11-kit-trust-0.24.1-5.fc38.x86_64
package-notes-srpm-macros-0.5-6.fc38.noarch
pam-1.5.2-15.fc38.x86_64
pam-libs-1.5.2-15.fc38.x86_64
patch-2.7.6-17.fc37.x86_64
pcre2-10.42-1.fc38.x86_64
pcre2-syntax-10.42-1.fc38.noarch
perl-srpm-macros-1-47.fc38.noarch
pkgconf-1.8.0-3.fc37.x86_64
pkgconf-m4-1.8.0-3.fc37.noarch
pkgconf-pkg-config-1.8.0-3.fc37.x86_64
popt-1.19-1.fc38.x86_64
publicsuffix-list-dafsa-20221208-1.fc38.noarch
python-srpm-macros-3.11-7.fc38.noarch
qt5-srpm-macros-5.15.8-1.fc38.noarch
readline-8.2-2.fc38.x86_64
redhat-rpm-config-245-1.fc38.noarch
rpm-4.18.0-9.fc38.x86_64
rpm-build-4.18.0-9.fc38.x86_64
rpm-build-libs-4.18.0-9.fc38.x86_64
rpm-libs-4.18.0-9.fc38.x86_64
rpm-sequoia-1.2.0-1.fc38.x86_64
rpmautospec-rpm-macros-0.3.1-1.fc38.noarch
rust-srpm-macros-23-1.fc38.noarch
sed-4.8-11.fc37.x86_64
setup-2.14.3-1.fc38.noarch
shadow-utils-2:4.13-3.fc38.x86_64
sqlite-libs-3.40.1-1.fc38.x86_64
systemd-libs-252.4-598.fc38.x86_64
tar-2:1.34-5.fc38.x86_64
tzdata-2022g-1.fc38.noarch
unzip-6.0-58.fc38.x86_64
util-linux-2.38.1-3.fc38.x86_64
util-linux-core-2.38.1-3.fc38.x86_64
which-2.21-36.fc38.x86_64
xxhash-libs-0.8.1-3.fc37.x86_64
xz-5.2.9-1.fc38.x86_64
xz-libs-5.2.9-1.fc38.x86_64
zip-3.0-35.fc38.x86_64
zlib-1.2.13-2.fc38.x86_64
zstd-1.5.2-3.fc37.x86_64
Complete!
Finish: dnf install
Start: creating root cache
Finish: creating root cache
Finish: chroot init
INFO: Installed packages:
INFO: nettle-3.8-2.fc37.x86_64
nim-srpm-macros-3-7.fc37.noarch
gpg-pubkey-5323552a-6112bcdc
systemd-libs-252.4-598.fc38.x86_64
glibc-common-2.36.9000-23.fc38.x86_64
authselect-libs-1.4.2-1.fc38.x86_64
cracklib-2.9.7-30.fc38.x86_64
file-5.42-5.fc38.x86_64
libmount-2.38.1-3.fc38.x86_64
gdbm-libs-1.23-2.fc37.x86_64
libidn2-2.3.4-1.fc38.x86_64
libblkid-2.38.1-3.fc38.x86_64
libunistring-1.0-2.fc37.x86_64
lua-srpm-macros-1-7.fc37.noarch
fpc-srpm-macros-1.3-6.fc37.noarch
efi-srpm-macros-5-6.fc37.noarch
libattr-2.5.1-5.fc37.x86_64
grep-3.8-2.fc38.x86_64
bash-5.2.15-1.fc38.x86_64
libnsl2-2.0.0-4.fc37.x86_64
qt5-srpm-macros-5.15.8-1.fc38.noarch
libevent-2.1.12-8.fc38.x86_64
libtasn1-4.19.0-1.fc38.x86_64
gnat-srpm-macros-5-1.fc38.noarch
libpkgconf-1.8.0-3.fc37.x86_64
perl-srpm-macros-1-47.fc38.noarch
libdb-5.3.28-54.fc38.x86_64
ncurses-base-6.4-2.20230114.fc38.noarch
unzip-6.0-58.fc38.x86_64
cpio-2.13-13.fc38.x86_64
which-2.21-36.fc38.x86_64
redhat-rpm-config-245-1.fc38.noarch
fonts-srpm-macros-2.0.5-10.fc38.noarch
fedora-repos-rawhide-38-0.3.noarch
libxml2-2.10.3-3.fc38.x86_64
file-libs-5.42-5.fc38.x86_64
ncurses-libs-6.4-2.20230114.fc38.x86_64
libssh-0.10.4-2.fc38.x86_64
libuuid-2.38.1-3.fc38.x86_64
libbrotli-1.0.9-11.fc38.x86_64
pkgconf-m4-1.8.0-3.fc37.noarch
libstdc++-13.0.1-0.1.fc38.x86_64
setup-2.14.3-1.fc38.noarch
libeconf-0.4.0-4.fc37.x86_64
libpsl-0.21.2-2.fc38.x86_64
keyutils-libs-1.6.1-5.fc37.x86_64
authselect-1.4.2-1.fc38.x86_64
glibc-2.36.9000-23.fc38.x86_64
elfutils-debuginfod-client-0.188-3.fc38.x86_64
pam-1.5.2-15.fc38.x86_64
libsmartcols-2.38.1-3.fc38.x86_64
tzdata-2022g-1.fc38.noarch
gmp-6.2.1-3.fc37.x86_64
ocaml-srpm-macros-7-2.fc37.noarch
rust-srpm-macros-23-1.fc38.noarch
binutils-gold-2.39-6.fc38.x86_64
p11-kit-trust-0.24.1-5.fc38.x86_64
libutempter-1.2.1-7.fc37.x86_64
libtirpc-1.3.3-0.fc37.x86_64
zlib-1.2.13-2.fc38.x86_64
lua-libs-5.4.4-7.fc38.x86_64
fedora-gpg-keys-38-0.3.noarch
libffi-3.4.4-1.fc38.x86_64
zip-3.0-35.fc38.x86_64
p11-kit-0.24.1-5.fc38.x86_64
fedora-repos-38-0.3.noarch
pkgconf-1.8.0-3.fc37.x86_64
gawk-5.1.1-4.fc37.x86_64
rpm-4.18.0-9.fc38.x86_64
ghc-srpm-macros-1.5.0-7.fc37.noarch
libverto-0.3.2-4.fc37.x86_64
gdb-minimal-12.1-10.fc38.x86_64
kernel-srpm-macros-1.0-15.fc37.noarch
ansible-srpm-macros-1-8.1.fc38.noarch
libsemanage-3.5-0.rc1.1.fc38.x86_64
openblas-srpm-macros-2-12.fc37.noarch
sed-4.8-11.fc37.x86_64
glibc-gconv-extra-2.36.9000-23.fc38.x86_64
libcom_err-1.46.5-3.fc37.x86_64
go-srpm-macros-3.2.0-1.fc38.noarch
gzip-1.12-2.fc37.x86_64
coreutils-9.1-10.fc38.x86_64
libarchive-3.6.1-3.fc38.x86_64
shadow-utils-4.13-3.fc38.x86_64
libsepol-3.5-0.rc1.1.fc38.x86_64
util-linux-core-2.38.1-3.fc38.x86_64
pam-libs-1.5.2-15.fc38.x86_64
zstd-1.5.2-3.fc37.x86_64
audit-libs-3.0.9-3.fc38.x86_64
mpfr-4.1.1-2.fc38.x86_64
xxhash-libs-0.8.1-3.fc37.x86_64
libsigsegv-2.14-3.fc37.x86_64
sqlite-libs-3.40.1-1.fc38.x86_64
rpm-sequoia-1.2.0-1.fc38.x86_64
xz-libs-5.2.9-1.fc38.x86_64
bzip2-libs-1.0.8-12.fc37.x86_64
ca-certificates-2022.2.54-5.fc37.noarch
libcap-2.48-5.fc37.x86_64
openldap-2.6.3-1.fc38.x86_64
libssh-config-0.10.4-2.fc38.noarch
libselinux-3.5-0.rc1.1.fc38.1.x86_64
libgcc-13.0.1-0.1.fc38.x86_64
alternatives-1.21-1.fc38.x86_64
elfutils-libelf-0.188-3.fc38.x86_64
libpwquality-1.4.5-2.fc38.x86_64
libzstd-1.5.2-3.fc37.x86_64
libacl-2.3.1-4.fc37.x86_64
curl-7.87.0-3.fc38.x86_64
fedora-release-common-38-0.15.noarch
gpg-pubkey-eb10b464-6202d9c6
filesystem-3.18-2.fc37.x86_64
package-notes-srpm-macros-0.5-6.fc38.noarch
fedora-release-identity-basic-38-0.15.noarch
debugedit-5.0-5.fc37.x86_64
rpmautospec-rpm-macros-0.3.1-1.fc38.noarch
rpm-libs-4.18.0-9.fc38.x86_64
ed-1.19-1.fc38.x86_64
findutils-4.9.0-2.fc37.x86_64
dwz-0.15-1.fc38.x86_64
libxcrypt-4.4.33-5.fc38.x86_64
cyrus-sasl-lib-2.1.28-8.fc38.x86_64
info-7.0.1-1.fc38.x86_64
popt-1.19-1.fc38.x86_64
binutils-2.39-6.fc38.x86_64
crypto-policies-20221215-2.gita4c31a3.fc38.noarch
elfutils-libs-0.188-3.fc38.x86_64
elfutils-0.188-3.fc38.x86_64
rpm-build-4.18.0-9.fc38.x86_64
patch-2.7.6-17.fc37.x86_64
python-srpm-macros-3.11-7.fc38.noarch
libcurl-7.87.0-3.fc38.x86_64
diffutils-3.9-1.fc38.x86_64
lz4-libs-1.9.4-1.fc38.x86_64
coreutils-common-9.1-10.fc38.x86_64
libnghttp2-1.51.0-2.fc38.x86_64
libgomp-13.0.1-0.1.fc38.x86_64
pcre2-syntax-10.42-1.fc38.noarch
elfutils-default-yama-scope-0.188-3.fc38.noarch
util-linux-2.38.1-3.fc38.x86_64
libcap-ng-0.8.3-5.fc38.x86_64
glibc-minimal-langpack-2.36.9000-23.fc38.x86_64
pcre2-10.42-1.fc38.x86_64
basesystem-11-14.fc37.noarch
bzip2-1.0.8-12.fc37.x86_64
libfdisk-2.38.1-3.fc38.x86_64
fedora-release-38-0.15.noarch
krb5-libs-1.20.1-7.fc38.x86_64
rpm-build-libs-4.18.0-9.fc38.x86_64
xz-5.2.9-1.fc38.x86_64
openssl-libs-3.0.7-3.fc38.x86_64
publicsuffix-list-dafsa-20221208-1.fc38.noarch
pkgconf-pkg-config-1.8.0-3.fc37.x86_64
jansson-2.13.1-6.fc38.x86_64
readline-8.2-2.fc38.x86_64
tar-1.34-5.fc38.x86_64
Start: buildsrpm
Start: rpmbuild -bs
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1674172800
Wrote: /builddir/build/SRPMS/pymol-2.5.0-6.fc38.src.rpm
Finish: rpmbuild -bs
cp: ‘var/lib/mock/fedora-rawhide-x86_64-1674292270.246865/root/var/log’: No such file or directory
INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-x86_64-1674292270.246865/root/var/log/dnf.rpm.log
/var/lib/mock/fedora-rawhide-x86_64-1674292270.246865/root/var/log/dnf.librepo.log
/var/lib/mock/fedora-rawhide-x86_64-1674292270.246865/root/var/log/dnf.log
Finish: buildsrpm
INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-6km37st1/pymol/pymol.spec) Config(child) 1 minutes 19 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
Finish: run
Running (timeout=18000): unbuffer mock --rebuild /var/lib/copr-rpmbuild/results/pymol-2.5.0-6.fc38.src.rpm --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1674292270.246865 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
INFO: mock.py version 3.5 starting (python version = 3.11.0, NVR = mock-3.5-1.fc37)...
Start(bootstrap): init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish(bootstrap): init plugins
Start: init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish: init plugins
INFO: Signal handler active
Start: run
INFO: Start(/var/lib/copr-rpmbuild/results/pymol-2.5.0-6.fc38.src.rpm) Config(fedora-rawhide-x86_64)
Start: clean chroot
Finish: clean chroot
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1674292270.246865/root.
INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1674292270.246865/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
INFO: enabled HW Info plugin
Mock Version: 3.5
INFO: Mock Version: 3.5
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1674292270.246865/root.
INFO: calling preinit hooks
INFO: enabled root cache
Start: unpacking root cache
Finish: unpacking root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
Mock Version: 3.5
INFO: Mock Version: 3.5
Start: dnf update
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Copr repository 15 kB/s | 3.7 kB 00:00
Copr repository 36 MB/s | 10 MB 00:00
fedora 30 kB/s | 13 kB 00:00
Dependencies resolved.
Nothing to do.
Complete!
Finish: dnf update
Finish: chroot init
Start: build phase for pymol-2.5.0-6.fc38.src.rpm
Start: build setup for pymol-2.5.0-6.fc38.src.rpm
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1674172800
Wrote: /builddir/build/SRPMS/pymol-2.5.0-6.fc38.src.rpm
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Copr repository 9.2 kB/s | 3.7 kB 00:00
fedora 49 kB/s | 13 kB 00:00
Dependencies resolved.
========================================================================================
Package Arch Version Repo Size
========================================================================================
Installing:
catch-devel x86_64 2.13.8-3.fc37 fedora 205 k
desktop-file-utils x86_64 0.26-7.fc37 fedora 72 k
freeglut-devel x86_64 3.4.0-1.fc38 fedora 949 k
freetype-devel x86_64 2.12.1-3.fc37 fedora 895 k
gcc-c++ x86_64 13.0.1-0.1.fc38 fedora 13 M
glew-devel x86_64 2.2.0-3.fc37 fedora 222 k
glm-devel noarch 0.9.9.8-5.fc38 fedora 302 k
libappstream-glib x86_64 0.8.2-1.fc38 fedora 404 k
libpng-devel x86_64 2:1.6.37-13.fc37 fedora 290 k
libxml2-devel x86_64 2.10.3-3.fc38 copr_base 502 k
mesa-libGL-devel x86_64 22.3.3-2.fc38 copr_base 36 k
mmtf-cpp-devel x86_64 1.1.0-1.fc38 fedora 30 k
msgpack-devel x86_64 3.1.0-10.fc37 fedora 428 k
netcdf-devel x86_64 4.9.0-4.fc38 fedora 99 k
python3-devel x86_64 3.11.1-3.fc38 fedora 269 k
python3-mmtf noarch 1.1.2-18.fc37 fedora 77 k
python3-numpy x86_64 1:1.23.5-2.fc38 copr_base 7.3 M
python3-qt5-devel x86_64 5.15.6-10.fc38 fedora 523 k
python3-setuptools noarch 65.5.1-1.fc38 fedora 1.7 M
python3-simplejson x86_64 3.18.1-1.fc38 fedora 329 k
Installing dependencies:
alsa-lib x86_64 1.2.8-2.fc38 fedora 517 k
annobin-docs noarch 11.06-2.fc38 fedora 93 k
annobin-plugin-gcc x86_64 11.06-2.fc38 fedora 890 k
avahi-libs x86_64 0.8-19.fc38 fedora 67 k
blosc x86_64 1.21.2-1.fc38 fedora 54 k
bluez-libs x86_64 5.66-4.fc38 fedora 84 k
brotli x86_64 1.0.9-11.fc38 copr_base 316 k
brotli-devel x86_64 1.0.9-11.fc38 copr_base 32 k
bzip2-devel x86_64 1.0.8-12.fc37 fedora 214 k
cairo x86_64 1.17.6-2.fc37 fedora 676 k
cairo-gobject x86_64 1.17.6-2.fc37 fedora 18 k
cdparanoia-libs x86_64 10.2-40.fc37 fedora 54 k
cmake x86_64 3.25.2-1.fc38 copr_base 6.9 M
cmake-data noarch 3.25.2-1.fc38 copr_base 1.7 M
cmake-filesystem x86_64 3.25.2-1.fc38 copr_base 17 k
cmake-rpm-macros noarch 3.25.2-1.fc38 copr_base 17 k
cpp x86_64 13.0.1-0.1.fc38 fedora 11 M
crypto-policies-scripts noarch 20221215-2.gita4c31a3.fc38 copr_base 104 k
cups-libs x86_64 1:2.4.2-5.fc38 fedora 268 k
dbus x86_64 1:1.14.4-1.fc38 fedora 7.8 k
dbus-broker x86_64 32-1.fc37 fedora 175 k
dbus-common noarch 1:1.14.4-1.fc38 fedora 15 k
dbus-libs x86_64 1:1.14.4-1.fc38 fedora 156 k
emacs-filesystem noarch 1:28.2-1.fc38 fedora 7.1 k
expat x86_64 2.5.0-1.fc38 fedora 110 k
fdk-aac-free x86_64 2.0.0-9.fc37 fedora 332 k
flac-libs x86_64 1.4.2-1.fc38 fedora 256 k
flexiblas x86_64 3.3.0-1.fc38 fedora 32 k
flexiblas-netlib x86_64 3.3.0-1.fc38 fedora 3.2 M
flexiblas-openblas-openmp x86_64 3.3.0-1.fc38 fedora 17 k
fontconfig x86_64 2.14.1-2.fc38 fedora 294 k
fonts-filesystem noarch 1:2.0.5-10.fc38 fedora 8.0 k
freeglut x86_64 3.4.0-1.fc38 fedora 154 k
freetype x86_64 2.12.1-3.fc37 fedora 407 k
fribidi x86_64 1.0.12-2.fc37 fedora 89 k
gc x86_64 8.2.2-1.fc38 fedora 110 k
gcc x86_64 13.0.1-0.1.fc38 fedora 34 M
gcc-gfortran x86_64 13.0.1-0.1.fc38 fedora 12 M
gcc-plugin-annobin x86_64 13.0.1-0.1.fc38 fedora 30 k
gdk-pixbuf2 x86_64 2.42.10-1.fc38 fedora 485 k
gl-manpages noarch 1.1-25.20190306.fc37 fedora 1.2 M
glib2 x86_64 2.74.1-3.fc38 copr_base 2.7 M
glib2-devel x86_64 2.74.1-3.fc38 copr_base 516 k
glibc-devel x86_64 2.36.9000-23.fc38 copr_base 46 k
glibc-headers-x86 noarch 2.36.9000-23.fc38 copr_base 454 k
glx-utils x86_64 8.4.0-14.20210504git0f9e7d9.fc37 fedora 41 k
gnutls x86_64 3.7.8-11.fc38 copr_base 1.1 M
google-noto-fonts-common noarch 20201206^1.git0c78c8329-9.fc38 fedora 18 k
google-noto-sans-vf-fonts noarch 20201206^1.git0c78c8329-9.fc38 fedora 729 k
graphene x86_64 1.10.6-4.fc37 fedora 62 k
graphite2 x86_64 1.3.14-11.fc38 copr_base 95 k
graphite2-devel x86_64 1.3.14-11.fc38 copr_base 21 k
groff-base x86_64 1.22.4-10.fc37 fedora 1.1 M
gsm x86_64 1.0.22-1.fc37 fedora 35 k
gssdp x86_64 1.6.2-1.fc38 fedora 58 k
gstreamer1 x86_64 1.20.5-1.fc38 fedora 1.4 M
gstreamer1-plugins-bad-free x86_64 1.20.5-2.fc38 copr_base 2.8 M
gstreamer1-plugins-base x86_64 1.20.5-1.fc38 fedora 2.1 M
guile22 x86_64 2.2.7-6.fc37 fedora 6.5 M
gupnp x86_64 1.6.3-1.fc38 fedora 106 k
gupnp-igd x86_64 1.2.0-7.fc38 fedora 34 k
harfbuzz x86_64 6.0.0-2.fc38 fedora 819 k
harfbuzz-devel x86_64 6.0.0-2.fc38 fedora 394 k
harfbuzz-icu x86_64 6.0.0-2.fc38 fedora 16 k
hdf-libs x86_64 4.2.15-11.fc37 fedora 294 k
hdf5 x86_64 1.12.1-10.fc37 fedora 2.3 M
hdf5-devel x86_64 1.12.1-10.fc37 fedora 1.3 M
hwdata noarch 0.366-1.fc38 fedora 1.5 M
iso-codes noarch 4.12.0-2.fc38 fedora 3.5 M
json-glib x86_64 1.6.6-3.fc37 fedora 162 k
jsoncpp x86_64 1.9.5-4.fc38 copr_base 97 k
kernel-headers x86_64 6.2.0-0.rc4.git0.1.fc38 fedora 1.5 M
lame-libs x86_64 3.100-13.fc37 fedora 335 k
langpacks-core-font-en noarch 3.0-27.fc38 fedora 9.9 k
lcms2 x86_64 2.14-1.fc38 fedora 176 k
libGLEW x86_64 2.2.0-3.fc37 fedora 176 k
libICE x86_64 1.0.10-9.fc37 fedora 71 k
libSM x86_64 1.2.3-11.fc37 fedora 42 k
libX11 x86_64 1.8.3-2.fc38 fedora 649 k
libX11-common noarch 1.8.3-2.fc38 fedora 178 k
libX11-devel x86_64 1.8.3-2.fc38 fedora 1.0 M
libX11-xcb x86_64 1.8.3-2.fc38 fedora 11 k
libXau x86_64 1.0.11-1.fc38 fedora 31 k
libXau-devel x86_64 1.0.11-1.fc38 fedora 13 k
libXext x86_64 1.3.5-1.fc38 fedora 39 k
libXfixes x86_64 6.0.0-4.fc37 fedora 19 k
libXft x86_64 2.3.6-1.fc38 fedora 71 k
libXi x86_64 1.8-3.fc37 fedora 39 k
libXrender x86_64 0.9.11-1.fc38 fedora 27 k
libXv x86_64 1.0.11-17.fc37 fedora 18 k
libXxf86vm x86_64 1.1.5-1.fc38 fedora 18 k
libaec x86_64 1.0.6-3.fc37 fedora 41 k
libaec-devel x86_64 1.0.6-3.fc37 fedora 12 k
libasyncns x86_64 0.8-23.fc37 fedora 30 k
libb2 x86_64 0.98.1-7.fc37 fedora 25 k
libblkid-devel x86_64 2.38.1-3.fc38 fedora 16 k
libcurl-devel x86_64 7.87.0-3.fc38 copr_base 895 k
libdatrie x86_64 0.2.13-4.fc37 fedora 32 k
libdrm x86_64 2.4.114-1.fc38 fedora 159 k
libdrm-devel x86_64 2.4.114-1.fc38 fedora 173 k
libdvdnav x86_64 6.1.1-4.fc37 fedora 55 k
libdvdread x86_64 6.1.3-2.fc37 fedora 72 k
libevdev x86_64 1.13.0-2.fc38 copr_base 45 k
libffi-devel x86_64 3.4.4-1.fc38 fedora 28 k
libgfortran x86_64 13.0.1-0.1.fc38 fedora 889 k
libglvnd x86_64 1:1.6.0-1.fc38 fedora 134 k
libglvnd-core-devel x86_64 1:1.6.0-1.fc38 fedora 17 k
libglvnd-devel x86_64 1:1.6.0-1.fc38 fedora 163 k
libglvnd-egl x86_64 1:1.6.0-1.fc38 fedora 36 k
libglvnd-gles x86_64 1:1.6.0-1.fc38 fedora 31 k
libglvnd-glx x86_64 1:1.6.0-1.fc38 fedora 140 k
libglvnd-opengl x86_64 1:1.6.0-1.fc38 fedora 42 k
libgudev x86_64 237-3.fc37 fedora 35 k
libicu x86_64 72.1-1.fc38 fedora 10 M
libicu-devel x86_64 72.1-1.fc38 fedora 918 k
libinput x86_64 1.22.1-2.fc38 copr_base 200 k
libjpeg-turbo x86_64 2.1.4-1.fc38 fedora 181 k
libmount-devel x86_64 2.38.1-3.fc38 fedora 18 k
libmpc x86_64 1.3.1-1.fc38 fedora 70 k
libnice x86_64 0.1.21-2.fc38 fedora 199 k
libogg x86_64 2:1.3.5-4.fc37 fedora 33 k
libpciaccess x86_64 0.16-7.fc37 fedora 27 k
libpciaccess-devel x86_64 0.16-7.fc37 fedora 12 k
libpng x86_64 2:1.6.37-13.fc37 fedora 119 k
libquadmath x86_64 13.0.1-0.1.fc38 fedora 179 k
libquadmath-devel x86_64 13.0.1-0.1.fc38 fedora 20 k
librsvg2 x86_64 2.55.1-3.fc38 fedora 3.1 M
libselinux-devel x86_64 3.5-0.rc1.1.fc38.1 fedora 150 k
libsepol-devel x86_64 3.5-0.rc1.1.fc38 fedora 49 k
libsndfile x86_64 1.1.0-5.fc38 fedora 212 k
libsoup3 x86_64 3.2.2-1.fc38 fedora 387 k
libsrtp x86_64 2.3.0-9.fc37 fedora 57 k
libstdc++-devel x86_64 13.0.1-0.1.fc38 fedora 2.6 M
libstemmer x86_64 2.2.0-4.fc38 fedora 170 k
libthai x86_64 0.1.29-3.fc37 fedora 213 k
libtheora x86_64 1:1.1.1-32.fc37 fedora 167 k
libtool-ltdl x86_64 2.4.7-5.fc38 fedora 37 k
libunwind x86_64 1.6.2-5.fc38 fedora 67 k
libusb1 x86_64 1.0.26-1.fc38 fedora 74 k
libuv x86_64 1:1.44.2-2.fc37 fedora 151 k
libva x86_64 2.17.0-1.fc38 fedora 104 k
libvisual x86_64 1:0.4.0-37.fc38 fedora 143 k
libvorbis x86_64 1:1.3.7-6.fc37 fedora 195 k
libwacom x86_64 2.4.0-1.fc37 fedora 42 k
libwacom-data noarch 2.4.0-1.fc37 fedora 180 k
libwayland-client x86_64 1.21.0-1.fc37 fedora 33 k
libwayland-cursor x86_64 1.21.0-1.fc37 fedora 19 k
libwayland-egl x86_64 1.21.0-1.fc37 fedora 13 k
libwayland-server x86_64 1.21.0-1.fc37 fedora 41 k
libwebp x86_64 1.3.0-1.fc38 fedora 283 k
libxcb x86_64 1.13.1-11.fc38 copr_base 226 k
libxcb-devel x86_64 1.13.1-11.fc38 copr_base 1.0 M
libxcrypt-devel x86_64 4.4.33-5.fc38 fedora 30 k
libxkbcommon x86_64 1.5.0-1.fc38 fedora 140 k
libxkbcommon-x11 x86_64 1.5.0-1.fc38 fedora 22 k
libxshmfence x86_64 1.3-11.fc37 fedora 12 k
lilv-libs x86_64 0.24.14-4.fc38 copr_base 58 k
make x86_64 1:4.4-1.fc38 fedora 580 k
mesa-filesystem x86_64 22.3.3-2.fc38 copr_base 19 k
mesa-libEGL x86_64 22.3.3-2.fc38 copr_base 130 k
mesa-libEGL-devel x86_64 22.3.3-2.fc38 copr_base 22 k
mesa-libGL x86_64 22.3.3-2.fc38 copr_base 176 k
mesa-libGLU x86_64 9.0.1-7.fc37 fedora 153 k
mesa-libGLU-devel x86_64 9.0.1-7.fc37 fedora 13 k
mesa-libgbm x86_64 22.3.3-2.fc38 copr_base 45 k
mesa-libglapi x86_64 22.3.3-2.fc38 copr_base 54 k
mpdecimal x86_64 2.5.1-4.fc37 fedora 102 k
mpg123-libs x86_64 1.31.2-1.fc38 fedora 340 k
msgpack x86_64 3.1.0-10.fc37 fedora 30 k
mtdev x86_64 1.1.6-4.fc37 fedora 20 k
ncurses x86_64 6.4-2.20230114.fc38 fedora 412 k
netcdf x86_64 4.9.0-4.fc38 fedora 828 k
nspr x86_64 4.35.0-3.fc38 fedora 136 k
nss x86_64 3.87.0-1.fc38 fedora 692 k
nss-softokn x86_64 3.87.0-1.fc38 fedora 1.0 M
nss-softokn-freebl x86_64 3.87.0-1.fc38 fedora 326 k
nss-sysinit x86_64 3.87.0-1.fc38 fedora 18 k
nss-util x86_64 3.87.0-1.fc38 fedora 86 k
openal-soft x86_64 1.22.2-6.fc38 fedora 489 k
openblas x86_64 0.3.21-4.fc38 fedora 35 k
openblas-openmp x86_64 0.3.21-4.fc38 fedora 5.1 M
opus x86_64 1.3.1-11.fc37 fedora 204 k
orc x86_64 0.4.33-1.fc38 fedora 204 k
pango x86_64 1.50.12-2.fc38 fedora 341 k
pcre x86_64 8.45-1.fc37.2 fedora 202 k
pcre2-devel x86_64 10.42-1.fc38 fedora 506 k
pcre2-utf16 x86_64 10.42-1.fc38 fedora 213 k
pcre2-utf32 x86_64 10.42-1.fc38 fedora 201 k
perl-Carp noarch 1.52-489.fc37 fedora 29 k
perl-Class-Struct noarch 0.66-494.fc38 fedora 24 k
perl-DynaLoader x86_64 1.52-494.fc38 fedora 28 k
perl-Encode x86_64 4:3.19-492.fc38 fedora 1.7 M
perl-English noarch 1.11-494.fc38 fedora 16 k
perl-Errno x86_64 1.36-494.fc38 fedora 17 k
perl-Exporter noarch 5.77-489.fc37 fedora 31 k
perl-Fcntl x86_64 1.15-494.fc38 fedora 23 k
perl-File-Basename noarch 2.85-494.fc38 fedora 19 k
perl-File-Find noarch 1.40-494.fc38 fedora 27 k
perl-File-Path noarch 2.18-489.fc37 fedora 35 k
perl-File-Temp noarch 1:0.231.100-489.fc37 fedora 59 k
perl-File-stat noarch 1.12-494.fc38 fedora 19 k
perl-Getopt-Long noarch 1:2.54-1.fc38 fedora 60 k
perl-Getopt-Std noarch 1.13-494.fc38 fedora 18 k
perl-HTTP-Tiny noarch 0.082-1.fc37 fedora 55 k
perl-IO x86_64 1.50-494.fc38 fedora 94 k
perl-IPC-Open3 noarch 1.22-494.fc38 fedora 25 k
perl-MIME-Base64 x86_64 3.16-489.fc37 fedora 30 k
perl-POSIX x86_64 2.03-494.fc38 fedora 100 k
perl-PathTools x86_64 3.84-489.fc37 fedora 89 k
perl-Pod-Escapes noarch 1:1.07-489.fc37 fedora 20 k
perl-Pod-Perldoc noarch 3.28.01-490.fc37 fedora 90 k
perl-Pod-Simple noarch 1:3.43-490.fc37 fedora 225 k
perl-Pod-Usage noarch 4:2.03-3.fc37 fedora 40 k
perl-Scalar-List-Utils x86_64 5:1.63-489.fc38 fedora 72 k
perl-SelectSaver noarch 1.02-494.fc38 fedora 14 k
perl-Socket x86_64 4:2.036-1.fc38 fedora 55 k
perl-Storable x86_64 1:3.26-489.fc37 fedora 97 k
perl-Symbol noarch 1.09-494.fc38 fedora 16 k
perl-Term-ANSIColor noarch 5.01-490.fc37 fedora 48 k
perl-Term-Cap noarch 1.17-489.fc37 fedora 22 k
perl-Text-ParseWords noarch 3.31-489.fc37 fedora 16 k
perl-Text-Tabs+Wrap noarch 2021.0814-489.fc37 fedora 22 k
perl-Time-Local noarch 2:1.300-489.fc37 fedora 33 k
perl-constant noarch 1.33-490.fc37 fedora 23 k
perl-if noarch 0.61.000-494.fc38 fedora 16 k
perl-interpreter x86_64 4:5.36.0-494.fc38 fedora 74 k
perl-libs x86_64 4:5.36.0-494.fc38 fedora 2.2 M
perl-mro x86_64 1.26-494.fc38 fedora 31 k
perl-overload noarch 1.35-494.fc38 fedora 48 k
perl-overloading noarch 0.02-494.fc38 fedora 15 k
perl-parent noarch 1:0.239-1.fc38 fedora 14 k
perl-podlators noarch 1:5.01-1.fc38 fedora 125 k
perl-vars noarch 1.05-494.fc38 fedora 15 k
pixman x86_64 0.40.0-6.fc37 fedora 277 k
pulseaudio-libs x86_64 16.1-2.fc38 fedora 687 k
pyproject-rpm-macros noarch 1.5.1-1.fc38 fedora 40 k
python-pip-wheel noarch 22.3.1-1.fc38 fedora 1.4 M
python-qt5-rpm-macros noarch 5.15.6-10.fc38 fedora 8.9 k
python-rpm-macros noarch 3.11-7.fc38 fedora 20 k
python-setuptools-wheel noarch 65.5.1-1.fc38 fedora 715 k
python3 x86_64 3.11.1-3.fc38 fedora 27 k
python3-dbus x86_64 1.3.2-2.fc38 copr_base 147 k
python3-libs x86_64 3.11.1-3.fc38 fedora 9.6 M
python3-msgpack x86_64 1.0.4-3.fc37 fedora 96 k
python3-packaging noarch 21.3-7.fc38 fedora 98 k
python3-pyparsing noarch 3.0.9-2.fc37 fedora 262 k
python3-pyqt5-sip x86_64 12.11.0-2.fc37 fedora 70 k
python3-qt5 x86_64 5.15.6-10.fc38 fedora 1.2 M
python3-qt5-base x86_64 5.15.6-10.fc38 fedora 3.3 M
python3-rpm-generators noarch 14-1.fc38 fedora 30 k
python3-rpm-macros noarch 3.11-7.fc38 fedora 15 k
qt-settings noarch 37.0-1.fc38 fedora 11 k
qt5-qtbase x86_64 5.15.8-2.fc38 fedora 3.6 M
qt5-qtbase-common noarch 5.15.8-2.fc38 fedora 11 k
qt5-qtbase-devel x86_64 5.15.8-2.fc38 fedora 3.5 M
qt5-qtbase-gui x86_64 5.15.8-2.fc38 fedora 6.4 M
qt5-qtconnectivity x86_64 5.15.8-1.fc38 fedora 464 k
qt5-qtdeclarative x86_64 5.15.8-1.fc38 fedora 4.2 M
qt5-qtlocation x86_64 5.15.8-1.fc38 fedora 3.0 M
qt5-qtmultimedia x86_64 5.15.8-1.fc38 fedora 812 k
qt5-qtsensors x86_64 5.15.8-1.fc38 fedora 227 k
qt5-qtserialport x86_64 5.15.8-1.fc38 fedora 65 k
qt5-qtsvg x86_64 5.15.8-1.fc38 fedora 186 k
qt5-qttools-common noarch 5.15.8-1.fc38 fedora 11 k
qt5-qttools-libs-designer x86_64 5.15.8-1.fc38 fedora 2.7 M
qt5-qttools-libs-help x86_64 5.15.8-1.fc38 fedora 157 k
qt5-qtwebchannel x86_64 5.15.8-1.fc38 fedora 99 k
qt5-qtwebsockets x86_64 5.15.8-1.fc38 fedora 87 k
qt5-qtx11extras x86_64 5.15.8-1.fc38 fedora 35 k
qt5-qtxmlpatterns x86_64 5.15.8-1.fc38 fedora 996 k
qt5-rpm-macros noarch 5.15.8-1.fc38 fedora 9.7 k
rhash x86_64 1.4.3-1.fc38 fedora 193 k
serd x86_64 0.30.12-2.fc37 fedora 61 k
shared-mime-info x86_64 2.2-2.fc37 fedora 381 k
snappy x86_64 1.1.9-5.fc37 fedora 36 k
sord x86_64 0.16.10-1.fc37 fedora 46 k
soundtouch x86_64 2.3.1-3.fc37 fedora 94 k
sratom x86_64 0.6.10-2.fc37 fedora 26 k
sysprof-capture-devel x86_64 3.46.0-1.fc38 fedora 58 k
vim-filesystem noarch 2:9.0.1221-1.fc38 fedora 18 k
vulkan-headers noarch 1.3.231.1-1.fc38 fedora 1.0 M
vulkan-loader x86_64 1.3.231.1-2.fc38 fedora 145 k
vulkan-loader-devel x86_64 1.3.231.1-2.fc38 fedora 9.1 k
webrtc-audio-processing x86_64 0.3.1-9.fc37 fedora 304 k
xcb-util x86_64 0.4.1-1.fc38 fedora 18 k
xcb-util-image x86_64 0.4.1-1.fc38 fedora 19 k
xcb-util-keysyms x86_64 0.4.1-1.fc38 fedora 14 k
xcb-util-renderutil x86_64 0.3.10-1.fc38 fedora 17 k
xcb-util-wm x86_64 0.4.2-1.fc38 fedora 31 k
xkeyboard-config noarch 2.36-3.fc38 fedora 956 k
xml-common noarch 0.6.3-59.fc37 fedora 31 k
xorg-x11-proto-devel noarch 2022.2-2.fc38 fedora 299 k
xz-devel x86_64 5.2.9-1.fc38 fedora 58 k
zlib-devel x86_64 1.2.13-2.fc38 fedora 45 k
Transaction Summary
========================================================================================
Install 314 Packages
Total download size: 230 M
Installed size: 861 M
Downloading Packages:
(1/314): brotli-devel-1.0.9-11.fc38.x86_64.rpm 1.2 MB/s | 32 kB 00:00
(2/314): brotli-1.0.9-11.fc38.x86_64.rpm 11 MB/s | 316 kB 00:00
(3/314): cmake-filesystem-3.25.2-1.fc38.x86_64. 9.4 MB/s | 17 kB 00:00
(4/314): cmake-data-3.25.2-1.fc38.noarch.rpm 195 MB/s | 1.7 MB 00:00
(5/314): cmake-rpm-macros-3.25.2-1.fc38.noarch. 2.9 MB/s | 17 kB 00:00
(6/314): crypto-policies-scripts-20221215-2.git 58 MB/s | 104 kB 00:00
(7/314): glib2-2.74.1-3.fc38.x86_64.rpm 223 MB/s | 2.7 MB 00:00
(8/314): glib2-devel-2.74.1-3.fc38.x86_64.rpm 44 MB/s | 516 kB 00:00
(9/314): glibc-devel-2.36.9000-23.fc38.x86_64.r 29 MB/s | 46 kB 00:00
(10/314): glibc-headers-x86-2.36.9000-23.fc38.n 119 MB/s | 454 kB 00:00
(11/314): graphite2-1.3.14-11.fc38.x86_64.rpm 50 MB/s | 95 kB 00:00
(12/314): gnutls-3.7.8-11.fc38.x86_64.rpm 132 MB/s | 1.1 MB 00:00
(13/314): graphite2-devel-1.3.14-11.fc38.x86_64 7.3 MB/s | 21 kB 00:00
(14/314): jsoncpp-1.9.5-4.fc38.x86_64.rpm 32 MB/s | 97 kB 00:00
(15/314): libcurl-devel-7.87.0-3.fc38.x86_64.rp 61 MB/s | 895 kB 00:00
(16/314): cmake-3.25.2-1.fc38.x86_64.rpm 75 MB/s | 6.9 MB 00:00
(17/314): libevdev-1.13.0-2.fc38.x86_64.rpm 5.3 MB/s | 45 kB 00:00
(18/314): libinput-1.22.1-2.fc38.x86_64.rpm 98 MB/s | 200 kB 00:00
(19/314): libxcb-1.13.1-11.fc38.x86_64.rpm 85 MB/s | 226 kB 00:00
(20/314): libxcb-devel-1.13.1-11.fc38.x86_64.rp 197 MB/s | 1.0 MB 00:00
(21/314): libxml2-devel-2.10.3-3.fc38.x86_64.rp 94 MB/s | 502 kB 00:00
(22/314): lilv-libs-0.24.14-4.fc38.x86_64.rpm 14 MB/s | 58 kB 00:00
(23/314): gstreamer1-plugins-bad-free-1.20.5-2. 64 MB/s | 2.8 MB 00:00
(24/314): mesa-filesystem-22.3.3-2.fc38.x86_64. 4.1 MB/s | 19 kB 00:00
(25/314): mesa-libEGL-22.3.3-2.fc38.x86_64.rpm 30 MB/s | 130 kB 00:00
(26/314): mesa-libEGL-devel-22.3.3-2.fc38.x86_6 9.3 MB/s | 22 kB 00:00
(27/314): mesa-libGL-22.3.3-2.fc38.x86_64.rpm 71 MB/s | 176 kB 00:00
(28/314): mesa-libGL-devel-22.3.3-2.fc38.x86_64 14 MB/s | 36 kB 00:00
(29/314): mesa-libgbm-22.3.3-2.fc38.x86_64.rpm 35 MB/s | 45 kB 00:00
(30/314): mesa-libglapi-22.3.3-2.fc38.x86_64.rp 37 MB/s | 54 kB 00:00
(31/314): python3-dbus-1.3.2-2.fc38.x86_64.rpm 26 MB/s | 147 kB 00:00
(32/314): annobin-docs-11.06-2.fc38.noarch.rpm 21 MB/s | 93 kB 00:00
(33/314): alsa-lib-1.2.8-2.fc38.x86_64.rpm 28 MB/s | 517 kB 00:00
(34/314): python3-numpy-1.23.5-2.fc38.x86_64.rp 249 MB/s | 7.3 MB 00:00
(35/314): annobin-plugin-gcc-11.06-2.fc38.x86_6 57 MB/s | 890 kB 00:00
(36/314): avahi-libs-0.8-19.fc38.x86_64.rpm 6.8 MB/s | 67 kB 00:00
(37/314): bzip2-devel-1.0.8-12.fc37.x86_64.rpm 39 MB/s | 214 kB 00:00
(38/314): blosc-1.21.2-1.fc38.x86_64.rpm 7.5 MB/s | 54 kB 00:00
(39/314): cairo-1.17.6-2.fc37.x86_64.rpm 151 MB/s | 676 kB 00:00
(40/314): cairo-gobject-1.17.6-2.fc37.x86_64.rp 4.7 MB/s | 18 kB 00:00
(41/314): bluez-libs-5.66-4.fc38.x86_64.rpm 5.7 MB/s | 84 kB 00:00
(42/314): catch-devel-2.13.8-3.fc37.x86_64.rpm 35 MB/s | 205 kB 00:00
(43/314): cdparanoia-libs-10.2-40.fc37.x86_64.r 8.7 MB/s | 54 kB 00:00
(44/314): cups-libs-2.4.2-5.fc38.x86_64.rpm 78 MB/s | 268 kB 00:00
(45/314): dbus-1.14.4-1.fc38.x86_64.rpm 1.7 MB/s | 7.8 kB 00:00
(46/314): dbus-broker-32-1.fc37.x86_64.rpm 34 MB/s | 175 kB 00:00
(47/314): dbus-common-1.14.4-1.fc38.noarch.rpm 3.7 MB/s | 15 kB 00:00
(48/314): dbus-libs-1.14.4-1.fc38.x86_64.rpm 38 MB/s | 156 kB 00:00
(49/314): desktop-file-utils-0.26-7.fc37.x86_64 19 MB/s | 72 kB 00:00
(50/314): emacs-filesystem-28.2-1.fc38.noarch.r 2.5 MB/s | 7.1 kB 00:00
(51/314): expat-2.5.0-1.fc38.x86_64.rpm 27 MB/s | 110 kB 00:00
(52/314): fdk-aac-free-2.0.0-9.fc37.x86_64.rpm 43 MB/s | 332 kB 00:00
(53/314): flexiblas-3.3.0-1.fc38.x86_64.rpm 19 MB/s | 32 kB 00:00
(54/314): flac-libs-1.4.2-1.fc38.x86_64.rpm 25 MB/s | 256 kB 00:00
(55/314): flexiblas-openblas-openmp-3.3.0-1.fc3 2.7 MB/s | 17 kB 00:00
(56/314): fontconfig-2.14.1-2.fc38.x86_64.rpm 50 MB/s | 294 kB 00:00
(57/314): cpp-13.0.1-0.1.fc38.x86_64.rpm 182 MB/s | 11 MB 00:00
(58/314): fonts-filesystem-2.0.5-10.fc38.noarch 575 kB/s | 8.0 kB 00:00
(59/314): flexiblas-netlib-3.3.0-1.fc38.x86_64. 95 MB/s | 3.2 MB 00:00
(60/314): freetype-2.12.1-3.fc37.x86_64.rpm 167 MB/s | 407 kB 00:00
(61/314): freeglut-3.4.0-1.fc38.x86_64.rpm 9.0 MB/s | 154 kB 00:00
(62/314): freetype-devel-2.12.1-3.fc37.x86_64.r 76 MB/s | 895 kB 00:00
(63/314): fribidi-1.0.12-2.fc37.x86_64.rpm 30 MB/s | 89 kB 00:00
(64/314): gc-8.2.2-1.fc38.x86_64.rpm 55 MB/s | 110 kB 00:00
(65/314): freeglut-devel-3.4.0-1.fc38.x86_64.rp 39 MB/s | 949 kB 00:00
(66/314): gcc-c++-13.0.1-0.1.fc38.x86_64.rpm 146 MB/s | 13 MB 00:00
(67/314): gcc-plugin-annobin-13.0.1-0.1.fc38.x8 7.0 MB/s | 30 kB 00:00
(68/314): gdk-pixbuf2-2.42.10-1.fc38.x86_64.rpm 25 MB/s | 485 kB 00:00
(69/314): gl-manpages-1.1-25.20190306.fc37.noar 71 MB/s | 1.2 MB 00:00
(70/314): glew-devel-2.2.0-3.fc37.x86_64.rpm 22 MB/s | 222 kB 00:00
(71/314): glm-devel-0.9.9.8-5.fc38.noarch.rpm 31 MB/s | 302 kB 00:00
(72/314): glx-utils-8.4.0-14.20210504git0f9e7d9 6.5 MB/s | 41 kB 00:00
(73/314): google-noto-fonts-common-20201206^1.g 2.5 MB/s | 18 kB 00:00
(74/314): google-noto-sans-vf-fonts-20201206^1. 117 MB/s | 729 kB 00:00
(75/314): gcc-13.0.1-0.1.fc38.x86_64.rpm 157 MB/s | 34 MB 00:00
(76/314): graphene-1.10.6-4.fc37.x86_64.rpm 1.5 MB/s | 62 kB 00:00
(77/314): gcc-gfortran-13.0.1-0.1.fc38.x86_64.r 54 MB/s | 12 MB 00:00
(78/314): gsm-1.0.22-1.fc37.x86_64.rpm 2.3 MB/s | 35 kB 00:00
(79/314): groff-base-1.22.4-10.fc37.x86_64.rpm 55 MB/s | 1.1 MB 00:00
(80/314): gstreamer1-1.20.5-1.fc38.x86_64.rpm 134 MB/s | 1.4 MB 00:00
(81/314): gssdp-1.6.2-1.fc38.x86_64.rpm 4.8 MB/s | 58 kB 00:00
(82/314): gupnp-1.6.3-1.fc38.x86_64.rpm 11 MB/s | 106 kB 00:00
(83/314): gupnp-igd-1.2.0-7.fc38.x86_64.rpm 3.6 MB/s | 34 kB 00:00
(84/314): gstreamer1-plugins-base-1.20.5-1.fc38 66 MB/s | 2.1 MB 00:00
(85/314): harfbuzz-devel-6.0.0-2.fc38.x86_64.rp 57 MB/s | 394 kB 00:00
(86/314): harfbuzz-icu-6.0.0-2.fc38.x86_64.rpm 1.8 MB/s | 16 kB 00:00
(87/314): guile22-2.2.7-6.fc37.x86_64.rpm 113 MB/s | 6.5 MB 00:00
(88/314): hdf-libs-4.2.15-11.fc37.x86_64.rpm 15 MB/s | 294 kB 00:00
(89/314): harfbuzz-6.0.0-2.fc38.x86_64.rpm 18 MB/s | 819 kB 00:00
(90/314): hdf5-devel-1.12.1-10.fc37.x86_64.rpm 50 MB/s | 1.3 MB 00:00
(91/314): hwdata-0.366-1.fc38.noarch.rpm 69 MB/s | 1.5 MB 00:00
(92/314): json-glib-1.6.6-3.fc37.x86_64.rpm 40 MB/s | 162 kB 00:00
(93/314): kernel-headers-6.2.0-0.rc4.git0.1.fc3 129 MB/s | 1.5 MB 00:00
(94/314): iso-codes-4.12.0-2.fc38.noarch.rpm 105 MB/s | 3.5 MB 00:00
(95/314): lame-libs-3.100-13.fc37.x86_64.rpm 20 MB/s | 335 kB 00:00
(96/314): langpacks-core-font-en-3.0-27.fc38.no 4.5 MB/s | 9.9 kB 00:00
(97/314): lcms2-2.14-1.fc38.x86_64.rpm 99 MB/s | 176 kB 00:00
(98/314): hdf5-1.12.1-10.fc37.x86_64.rpm 32 MB/s | 2.3 MB 00:00
(99/314): libICE-1.0.10-9.fc37.x86_64.rpm 21 MB/s | 71 kB 00:00
(100/314): libSM-1.2.3-11.fc37.x86_64.rpm 30 MB/s | 42 kB 00:00
(101/314): libGLEW-2.2.0-3.fc37.x86_64.rpm 26 MB/s | 176 kB 00:00
(102/314): libX11-1.8.3-2.fc38.x86_64.rpm 138 MB/s | 649 kB 00:00
(103/314): libX11-common-1.8.3-2.fc38.noarch.rp 39 MB/s | 178 kB 00:00
(104/314): libX11-xcb-1.8.3-2.fc38.x86_64.rpm 3.8 MB/s | 11 kB 00:00
(105/314): libX11-devel-1.8.3-2.fc38.x86_64.rpm 133 MB/s | 1.0 MB 00:00
(106/314): libXau-1.0.11-1.fc38.x86_64.rpm 8.9 MB/s | 31 kB 00:00
(107/314): libXau-devel-1.0.11-1.fc38.x86_64.rp 4.6 MB/s | 13 kB 00:00
(108/314): libXext-1.3.5-1.fc38.x86_64.rpm 32 MB/s | 39 kB 00:00
(109/314): libXfixes-6.0.0-4.fc37.x86_64.rpm 13 MB/s | 19 kB 00:00
(110/314): libXft-2.3.6-1.fc38.x86_64.rpm 32 MB/s | 71 kB 00:00
(111/314): libXi-1.8-3.fc37.x86_64.rpm 22 MB/s | 39 kB 00:00
(112/314): libXrender-0.9.11-1.fc38.x86_64.rpm 13 MB/s | 27 kB 00:00
(113/314): libXxf86vm-1.1.5-1.fc38.x86_64.rpm 6.9 MB/s | 18 kB 00:00
(114/314): libaec-1.0.6-3.fc37.x86_64.rpm 25 MB/s | 41 kB 00:00
(115/314): libXv-1.0.11-17.fc37.x86_64.rpm 4.1 MB/s | 18 kB 00:00
(116/314): libappstream-glib-0.8.2-1.fc38.x86_6 66 MB/s | 404 kB 00:00
(117/314): libasyncns-0.8-23.fc37.x86_64.rpm 5.5 MB/s | 30 kB 00:00
(118/314): libaec-devel-1.0.6-3.fc37.x86_64.rpm 1.5 MB/s | 12 kB 00:00
(119/314): libb2-0.98.1-7.fc37.x86_64.rpm 19 MB/s | 25 kB 00:00
(120/314): libdatrie-0.2.13-4.fc37.x86_64.rpm 20 MB/s | 32 kB 00:00
(121/314): libdrm-2.4.114-1.fc38.x86_64.rpm 60 MB/s | 159 kB 00:00
(122/314): libdrm-devel-2.4.114-1.fc38.x86_64.r 82 MB/s | 173 kB 00:00
(123/314): libblkid-devel-2.38.1-3.fc38.x86_64. 2.7 MB/s | 16 kB 00:00
(124/314): libdvdnav-6.1.1-4.fc37.x86_64.rpm 15 MB/s | 55 kB 00:00
(125/314): libgfortran-13.0.1-0.1.fc38.x86_64.r 245 MB/s | 889 kB 00:00
(126/314): libdvdread-6.1.3-2.fc37.x86_64.rpm 9.3 MB/s | 72 kB 00:00
(127/314): libffi-devel-3.4.4-1.fc38.x86_64.rpm 4.2 MB/s | 28 kB 00:00
(128/314): libglvnd-1.6.0-1.fc38.x86_64.rpm 44 MB/s | 134 kB 00:00
(129/314): libglvnd-core-devel-1.6.0-1.fc38.x86 5.3 MB/s | 17 kB 00:00
(130/314): libglvnd-devel-1.6.0-1.fc38.x86_64.r 48 MB/s | 163 kB 00:00
(131/314): libglvnd-egl-1.6.0-1.fc38.x86_64.rpm 21 MB/s | 36 kB 00:00
(132/314): libglvnd-gles-1.6.0-1.fc38.x86_64.rp 12 MB/s | 31 kB 00:00
(133/314): libglvnd-glx-1.6.0-1.fc38.x86_64.rpm 41 MB/s | 140 kB 00:00
(134/314): libglvnd-opengl-1.6.0-1.fc38.x86_64. 15 MB/s | 42 kB 00:00
(135/314): libgudev-237-3.fc37.x86_64.rpm 23 MB/s | 35 kB 00:00
(136/314): libjpeg-turbo-2.1.4-1.fc38.x86_64.rp 40 MB/s | 181 kB 00:00
(137/314): libicu-devel-72.1-1.fc38.x86_64.rpm 64 MB/s | 918 kB 00:00
(138/314): libmount-devel-2.38.1-3.fc38.x86_64. 1.8 MB/s | 18 kB 00:00
(139/314): libmpc-1.3.1-1.fc38.x86_64.rpm 18 MB/s | 70 kB 00:00
(140/314): libogg-1.3.5-4.fc37.x86_64.rpm 6.3 MB/s | 33 kB 00:00
(141/314): libnice-0.1.21-2.fc38.x86_64.rpm 20 MB/s | 199 kB 00:00
(142/314): libpciaccess-0.16-7.fc37.x86_64.rpm 6.5 MB/s | 27 kB 00:00
(143/314): libpciaccess-devel-0.16-7.fc37.x86_6 3.4 MB/s | 12 kB 00:00
(144/314): libpng-1.6.37-13.fc37.x86_64.rpm 34 MB/s | 119 kB 00:00
(145/314): libpng-devel-1.6.37-13.fc37.x86_64.r 39 MB/s | 290 kB 00:00
(146/314): libquadmath-13.0.1-0.1.fc38.x86_64.r 30 MB/s | 179 kB 00:00
(147/314): libquadmath-devel-13.0.1-0.1.fc38.x8 2.7 MB/s | 20 kB 00:00
(148/314): libicu-72.1-1.fc38.x86_64.rpm 160 MB/s | 10 MB 00:00
(149/314): libselinux-devel-3.5-0.rc1.1.fc38.1. 7.3 MB/s | 150 kB 00:00
(150/314): librsvg2-2.55.1-3.fc38.x86_64.rpm 98 MB/s | 3.1 MB 00:00
(151/314): libsepol-devel-3.5-0.rc1.1.fc38.x86_ 4.9 MB/s | 49 kB 00:00
(152/314): libsoup3-3.2.2-1.fc38.x86_64.rpm 68 MB/s | 387 kB 00:00
(153/314): libsndfile-1.1.0-5.fc38.x86_64.rpm 19 MB/s | 212 kB 00:00
(154/314): libsrtp-2.3.0-9.fc37.x86_64.rpm 11 MB/s | 57 kB 00:00
(155/314): libstemmer-2.2.0-4.fc38.x86_64.rpm 58 MB/s | 170 kB 00:00
(156/314): libthai-0.1.29-3.fc37.x86_64.rpm 38 MB/s | 213 kB 00:00
(157/314): libstdc++-devel-13.0.1-0.1.fc38.x86_ 188 MB/s | 2.6 MB 00:00
(158/314): libtool-ltdl-2.4.7-5.fc38.x86_64.rpm 7.7 MB/s | 37 kB 00:00
(159/314): libunwind-1.6.2-5.fc38.x86_64.rpm 17 MB/s | 67 kB 00:00
(160/314): libusb1-1.0.26-1.fc38.x86_64.rpm 22 MB/s | 74 kB 00:00
(161/314): libtheora-1.1.1-32.fc37.x86_64.rpm 12 MB/s | 167 kB 00:00
(162/314): libuv-1.44.2-2.fc37.x86_64.rpm 63 MB/s | 151 kB 00:00
(163/314): libva-2.17.0-1.fc38.x86_64.rpm 22 MB/s | 104 kB 00:00
(164/314): libvisual-0.4.0-37.fc38.x86_64.rpm 27 MB/s | 143 kB 00:00
(165/314): libwacom-2.4.0-1.fc37.x86_64.rpm 21 MB/s | 42 kB 00:00
(166/314): libwacom-data-2.4.0-1.fc37.noarch.rp 91 MB/s | 180 kB 00:00
(167/314): libvorbis-1.3.7-6.fc37.x86_64.rpm 28 MB/s | 195 kB 00:00
(168/314): libwayland-client-1.21.0-1.fc37.x86_ 18 MB/s | 33 kB 00:00
(169/314): libwayland-cursor-1.21.0-1.fc37.x86_ 12 MB/s | 19 kB 00:00
(170/314): libwayland-egl-1.21.0-1.fc37.x86_64. 7.9 MB/s | 13 kB 00:00
(171/314): libwayland-server-1.21.0-1.fc37.x86_ 28 MB/s | 41 kB 00:00
(172/314): libxcrypt-devel-4.4.33-5.fc38.x86_64 21 MB/s | 30 kB 00:00
(173/314): libwebp-1.3.0-1.fc38.x86_64.rpm 92 MB/s | 283 kB 00:00
(174/314): libxkbcommon-1.5.0-1.fc38.x86_64.rpm 44 MB/s | 140 kB 00:00
(175/314): libxkbcommon-x11-1.5.0-1.fc38.x86_64 9.3 MB/s | 22 kB 00:00
(176/314): libxshmfence-1.3-11.fc37.x86_64.rpm 3.4 MB/s | 12 kB 00:00
(177/314): mesa-libGLU-9.0.1-7.fc37.x86_64.rpm 46 MB/s | 153 kB 00:00
(178/314): make-4.4-1.fc38.x86_64.rpm 107 MB/s | 580 kB 00:00
(179/314): mesa-libGLU-devel-9.0.1-7.fc37.x86_6 3.5 MB/s | 13 kB 00:00
(180/314): mpdecimal-2.5.1-4.fc37.x86_64.rpm 29 MB/s | 102 kB 00:00
(181/314): msgpack-3.1.0-10.fc37.x86_64.rpm 10 MB/s | 30 kB 00:00
(182/314): mpg123-libs-1.31.2-1.fc38.x86_64.rpm 41 MB/s | 340 kB 00:00
(183/314): mmtf-cpp-devel-1.1.0-1.fc38.x86_64.r 2.4 MB/s | 30 kB 00:00
(184/314): mtdev-1.1.6-4.fc37.x86_64.rpm 8.3 MB/s | 20 kB 00:00
(185/314): msgpack-devel-3.1.0-10.fc37.x86_64.r 43 MB/s | 428 kB 00:00
(186/314): ncurses-6.4-2.20230114.fc38.x86_64.r 51 MB/s | 412 kB 00:00
(187/314): netcdf-4.9.0-4.fc38.x86_64.rpm 63 MB/s | 828 kB 00:00
(188/314): nspr-4.35.0-3.fc38.x86_64.rpm 23 MB/s | 136 kB 00:00
(189/314): netcdf-devel-4.9.0-4.fc38.x86_64.rpm 8.8 MB/s | 99 kB 00:00
(190/314): nss-3.87.0-1.fc38.x86_64.rpm 102 MB/s | 692 kB 00:00
(191/314): nss-softokn-freebl-3.87.0-1.fc38.x86 39 MB/s | 326 kB 00:00
(192/314): nss-softokn-3.87.0-1.fc38.x86_64.rpm 80 MB/s | 1.0 MB 00:00
(193/314): nss-sysinit-3.87.0-1.fc38.x86_64.rpm 2.8 MB/s | 18 kB 00:00
(194/314): nss-util-3.87.0-1.fc38.x86_64.rpm 14 MB/s | 86 kB 00:00
(195/314): openblas-0.3.21-4.fc38.x86_64.rpm 6.6 MB/s | 35 kB 00:00
(196/314): openal-soft-1.22.2-6.fc38.x86_64.rpm 46 MB/s | 489 kB 00:00
(197/314): opus-1.3.1-11.fc37.x86_64.rpm 33 MB/s | 204 kB 00:00
(198/314): pango-1.50.12-2.fc38.x86_64.rpm 33 MB/s | 341 kB 00:00
(199/314): orc-0.4.33-1.fc38.x86_64.rpm 16 MB/s | 204 kB 00:00
(200/314): pcre-8.45-1.fc37.2.x86_64.rpm 29 MB/s | 202 kB 00:00
(201/314): pcre2-devel-10.42-1.fc38.x86_64.rpm 51 MB/s | 506 kB 00:00
(202/314): pcre2-utf16-10.42-1.fc38.x86_64.rpm 24 MB/s | 213 kB 00:00
(203/314): pcre2-utf32-10.42-1.fc38.x86_64.rpm 35 MB/s | 201 kB 00:00
(204/314): perl-Class-Struct-0.66-494.fc38.noar 3.9 MB/s | 24 kB 00:00
(205/314): perl-Carp-1.52-489.fc37.noarch.rpm 2.4 MB/s | 29 kB 00:00
(206/314): perl-DynaLoader-1.52-494.fc38.x86_64 2.3 MB/s | 28 kB 00:00
(207/314): openblas-openmp-0.3.21-4.fc38.x86_64 82 MB/s | 5.1 MB 00:00
(208/314): perl-English-1.11-494.fc38.noarch.rp 1.0 MB/s | 16 kB 00:00
(209/314): perl-Errno-1.36-494.fc38.x86_64.rpm 1.6 MB/s | 17 kB 00:00
(210/314): perl-Encode-3.19-492.fc38.x86_64.rpm 51 MB/s | 1.7 MB 00:00
(211/314): perl-Exporter-5.77-489.fc37.noarch.r 2.1 MB/s | 31 kB 00:00
(212/314): perl-Fcntl-1.15-494.fc38.x86_64.rpm 1.7 MB/s | 23 kB 00:00
(213/314): perl-File-Basename-2.85-494.fc38.noa 2.1 MB/s | 19 kB 00:00
(214/314): perl-File-Find-1.40-494.fc38.noarch. 2.3 MB/s | 27 kB 00:00
(215/314): perl-File-Path-2.18-489.fc37.noarch. 2.9 MB/s | 35 kB 00:00
(216/314): perl-File-Temp-0.231.100-489.fc37.no 6.0 MB/s | 59 kB 00:00
(217/314): perl-File-stat-1.12-494.fc38.noarch. 4.2 MB/s | 19 kB 00:00
(218/314): perl-Getopt-Std-1.13-494.fc38.noarch 4.7 MB/s | 18 kB 00:00
(219/314): perl-Getopt-Long-2.54-1.fc38.noarch. 9.6 MB/s | 60 kB 00:00
(220/314): perl-HTTP-Tiny-0.082-1.fc37.noarch.r 10 MB/s | 55 kB 00:00
(221/314): perl-IO-1.50-494.fc38.x86_64.rpm 19 MB/s | 94 kB 00:00
(222/314): perl-IPC-Open3-1.22-494.fc38.noarch. 5.9 MB/s | 25 kB 00:00
(223/314): perl-MIME-Base64-3.16-489.fc37.x86_6 5.5 MB/s | 30 kB 00:00
(224/314): perl-PathTools-3.84-489.fc37.x86_64. 17 MB/s | 89 kB 00:00
(225/314): perl-POSIX-2.03-494.fc38.x86_64.rpm 13 MB/s | 100 kB 00:00
(226/314): perl-Pod-Escapes-1.07-489.fc37.noarc 5.5 MB/s | 20 kB 00:00
(227/314): perl-Pod-Perldoc-3.28.01-490.fc37.no 17 MB/s | 90 kB 00:00
(228/314): perl-Pod-Usage-2.03-3.fc37.noarch.rp 5.2 MB/s | 40 kB 00:00
(229/314): perl-Pod-Simple-3.43-490.fc37.noarch 22 MB/s | 225 kB 00:00
(230/314): perl-Scalar-List-Utils-1.63-489.fc38 9.3 MB/s | 72 kB 00:00
(231/314): perl-Socket-2.036-1.fc38.x86_64.rpm 16 MB/s | 55 kB 00:00
(232/314): perl-SelectSaver-1.02-494.fc38.noarc 2.4 MB/s | 14 kB 00:00
(233/314): perl-Storable-3.26-489.fc37.x86_64.r 23 MB/s | 97 kB 00:00
(234/314): perl-Symbol-1.09-494.fc38.noarch.rpm 4.8 MB/s | 16 kB 00:00
(235/314): perl-Term-Cap-1.17-489.fc37.noarch.r 6.1 MB/s | 22 kB 00:00
(236/314): perl-Term-ANSIColor-5.01-490.fc37.no 7.7 MB/s | 48 kB 00:00
(237/314): perl-Text-ParseWords-3.31-489.fc37.n 3.0 MB/s | 16 kB 00:00
(238/314): perl-Text-Tabs+Wrap-2021.0814-489.fc 6.7 MB/s | 22 kB 00:00
(239/314): perl-Time-Local-1.300-489.fc37.noarc 8.5 MB/s | 33 kB 00:00
(240/314): perl-constant-1.33-490.fc37.noarch.r 4.1 MB/s | 23 kB 00:00
(241/314): perl-if-0.61.000-494.fc38.noarch.rpm 2.1 MB/s | 16 kB 00:00
(242/314): perl-interpreter-5.36.0-494.fc38.x86 7.4 MB/s | 74 kB 00:00
(243/314): perl-mro-1.26-494.fc38.x86_64.rpm 2.2 MB/s | 31 kB 00:00
(244/314): perl-overload-1.35-494.fc38.noarch.r 4.1 MB/s | 48 kB 00:00
(245/314): perl-parent-0.239-1.fc38.noarch.rpm 2.6 MB/s | 14 kB 00:00
(246/314): perl-libs-5.36.0-494.fc38.x86_64.rpm 82 MB/s | 2.2 MB 00:00
(247/314): perl-overloading-0.02-494.fc38.noarc 1.3 MB/s | 15 kB 00:00
(248/314): pixman-0.40.0-6.fc37.x86_64.rpm 128 MB/s | 277 kB 00:00
(249/314): perl-podlators-5.01-1.fc38.noarch.rp 17 MB/s | 125 kB 00:00
(250/314): perl-vars-1.05-494.fc38.noarch.rpm 3.0 MB/s | 15 kB 00:00
(251/314): pyproject-rpm-macros-1.5.1-1.fc38.no 18 MB/s | 40 kB 00:00
(252/314): python-qt5-rpm-macros-5.15.6-10.fc38 1.5 MB/s | 8.9 kB 00:00
(253/314): pulseaudio-libs-16.1-2.fc38.x86_64.r 52 MB/s | 687 kB 00:00
(254/314): python-pip-wheel-22.3.1-1.fc38.noarc 98 MB/s | 1.4 MB 00:00
(255/314): python-rpm-macros-3.11-7.fc38.noarch 2.5 MB/s | 20 kB 00:00
(256/314): python-setuptools-wheel-65.5.1-1.fc3 115 MB/s | 715 kB 00:00
(257/314): python3-3.11.1-3.fc38.x86_64.rpm 15 MB/s | 27 kB 00:00
(258/314): python3-devel-3.11.1-3.fc38.x86_64.r 78 MB/s | 269 kB 00:00
(259/314): python3-msgpack-1.0.4-3.fc37.x86_64. 16 MB/s | 96 kB 00:00
(260/314): python3-mmtf-1.1.2-18.fc37.noarch.rp 4.5 MB/s | 77 kB 00:00
(261/314): python3-packaging-21.3-7.fc38.noarch 15 MB/s | 98 kB 00:00
(262/314): python3-pyparsing-3.0.9-2.fc37.noarc 43 MB/s | 262 kB 00:00
(263/314): python3-pyqt5-sip-12.11.0-2.fc37.x86 16 MB/s | 70 kB 00:00
(264/314): python3-qt5-5.15.6-10.fc38.x86_64.rp 56 MB/s | 1.2 MB 00:00
(265/314): python3-qt5-base-5.15.6-10.fc38.x86_ 113 MB/s | 3.3 MB 00:00
(266/314): python3-qt5-devel-5.15.6-10.fc38.x86 42 MB/s | 523 kB 00:00
(267/314): python3-rpm-generators-14-1.fc38.noa 6.4 MB/s | 30 kB 00:00
(268/314): python3-libs-3.11.1-3.fc38.x86_64.rp 137 MB/s | 9.6 MB 00:00
(269/314): python3-rpm-macros-3.11-7.fc38.noarc 1.1 MB/s | 15 kB 00:00
(270/314): python3-setuptools-65.5.1-1.fc38.noa 109 MB/s | 1.7 MB 00:00
(271/314): qt-settings-37.0-1.fc38.noarch.rpm 4.2 MB/s | 11 kB 00:00
(272/314): python3-simplejson-3.18.1-1.fc38.x86 33 MB/s | 329 kB 00:00
(273/314): qt5-qtbase-common-5.15.8-2.fc38.noar 2.0 MB/s | 11 kB 00:00
(274/314): qt5-qtbase-5.15.8-2.fc38.x86_64.rpm 133 MB/s | 3.6 MB 00:00
(275/314): qt5-qtbase-devel-5.15.8-2.fc38.x86_6 98 MB/s | 3.5 MB 00:00
(276/314): qt5-qtbase-gui-5.15.8-2.fc38.x86_64. 139 MB/s | 6.4 MB 00:00
(277/314): qt5-qtdeclarative-5.15.8-1.fc38.x86_ 191 MB/s | 4.2 MB 00:00
(278/314): qt5-qtconnectivity-5.15.8-1.fc38.x86 12 MB/s | 464 kB 00:00
(279/314): qt5-qtsensors-5.15.8-1.fc38.x86_64.r 28 MB/s | 227 kB 00:00
(280/314): qt5-qtmultimedia-5.15.8-1.fc38.x86_6 52 MB/s | 812 kB 00:00
(281/314): qt5-qtlocation-5.15.8-1.fc38.x86_64. 99 MB/s | 3.0 MB 00:00
(282/314): qt5-qtserialport-5.15.8-1.fc38.x86_6 6.5 MB/s | 65 kB 00:00
(283/314): qt5-qtsvg-5.15.8-1.fc38.x86_64.rpm 27 MB/s | 186 kB 00:00
(284/314): qt5-qttools-common-5.15.8-1.fc38.noa 3.2 MB/s | 11 kB 00:00
(285/314): qt5-qttools-libs-help-5.15.8-1.fc38. 21 MB/s | 157 kB 00:00
(286/314): qt5-qtwebchannel-5.15.8-1.fc38.x86_6 12 MB/s | 99 kB 00:00
(287/314): qt5-qttools-libs-designer-5.15.8-1.f 137 MB/s | 2.7 MB 00:00
(288/314): qt5-qtwebsockets-5.15.8-1.fc38.x86_6 8.8 MB/s | 87 kB 00:00
(289/314): qt5-qtx11extras-5.15.8-1.fc38.x86_64 3.2 MB/s | 35 kB 00:00
(290/314): rhash-1.4.3-1.fc38.x86_64.rpm 130 MB/s | 193 kB 00:00
(291/314): qt5-rpm-macros-5.15.8-1.fc38.noarch. 1.9 MB/s | 9.7 kB 00:00
(292/314): shared-mime-info-2.2-2.fc37.x86_64.r 108 MB/s | 381 kB 00:00
(293/314): serd-0.30.12-2.fc37.x86_64.rpm 10 MB/s | 61 kB 00:00
(294/314): qt5-qtxmlpatterns-5.15.8-1.fc38.x86_ 79 MB/s | 996 kB 00:00
(295/314): snappy-1.1.9-5.fc37.x86_64.rpm 5.5 MB/s | 36 kB 00:00
(296/314): soundtouch-2.3.1-3.fc37.x86_64.rpm 18 MB/s | 94 kB 00:00
(297/314): sord-0.16.10-1.fc37.x86_64.rpm 6.4 MB/s | 46 kB 00:00
(298/314): vim-filesystem-9.0.1221-1.fc38.noarc 3.2 MB/s | 18 kB 00:00
(299/314): sratom-0.6.10-2.fc37.x86_64.rpm 3.1 MB/s | 26 kB 00:00
(300/314): sysprof-capture-devel-3.46.0-1.fc38. 7.1 MB/s | 58 kB 00:00
(301/314): vulkan-loader-1.3.231.1-2.fc38.x86_6 34 MB/s | 145 kB 00:00
(302/314): vulkan-loader-devel-1.3.231.1-2.fc38 1.5 MB/s | 9.1 kB 00:00
(303/314): vulkan-headers-1.3.231.1-1.fc38.noar 96 MB/s | 1.0 MB 00:00
(304/314): webrtc-audio-processing-0.3.1-9.fc37 40 MB/s | 304 kB 00:00
(305/314): xcb-util-0.4.1-1.fc38.x86_64.rpm 3.4 MB/s | 18 kB 00:00
(306/314): xcb-util-image-0.4.1-1.fc38.x86_64.r 3.5 MB/s | 19 kB 00:00
(307/314): xcb-util-keysyms-0.4.1-1.fc38.x86_64 3.0 MB/s | 14 kB 00:00
(308/314): xcb-util-renderutil-0.3.10-1.fc38.x8 3.8 MB/s | 17 kB 00:00
(309/314): xcb-util-wm-0.4.2-1.fc38.x86_64.rpm 11 MB/s | 31 kB 00:00
(310/314): xml-common-0.6.3-59.fc37.noarch.rpm 11 MB/s | 31 kB 00:00
(311/314): xkeyboard-config-2.36-3.fc38.noarch. 140 MB/s | 956 kB 00:00
(312/314): xorg-x11-proto-devel-2022.2-2.fc38.n 42 MB/s | 299 kB 00:00
(313/314): xz-devel-5.2.9-1.fc38.x86_64.rpm 9.3 MB/s | 58 kB 00:00
(314/314): zlib-devel-1.2.13-2.fc38.x86_64.rpm 8.9 MB/s | 45 kB 00:00
--------------------------------------------------------------------------------
Total 145 MB/s | 230 MB 00:01
Running transaction check
Transaction check succeeded.
Running transaction test
Transaction test succeeded.
Running transaction
Preparing : 1/1
Installing : cmake-filesystem-3.25.2-1.fc38.x86_64 1/314
Installing : libpng-2:1.6.37-13.fc37.x86_64 2/314
Installing : nspr-4.35.0-3.fc38.x86_64 3/314
Installing : libX11-xcb-1.8.3-2.fc38.x86_64 4/314
Installing : expat-2.5.0-1.fc38.x86_64 5/314
Installing : zlib-devel-1.2.13-2.fc38.x86_64 6/314
Installing : libwayland-client-1.21.0-1.fc37.x86_64 7/314
Installing : libogg-2:1.3.5-4.fc37.x86_64 8/314
Installing : libglvnd-1:1.6.0-1.fc38.x86_64 9/314
Installing : dbus-libs-1:1.14.4-1.fc38.x86_64 10/314
Installing : nss-util-3.87.0-1.fc38.x86_64 11/314
Installing : libquadmath-13.0.1-0.1.fc38.x86_64 12/314
Installing : libgfortran-13.0.1-0.1.fc38.x86_64 13/314
Installing : libmpc-1.3.1-1.fc38.x86_64 14/314
Installing : libjpeg-turbo-2.1.4-1.fc38.x86_64 15/314
Installing : libicu-72.1-1.fc38.x86_64 16/314
Installing : serd-0.30.12-2.fc37.x86_64 17/314
Installing : python-rpm-macros-3.11-7.fc38.noarch 18/314
Installing : opus-1.3.1-11.fc37.x86_64 19/314
Installing : libaec-1.0.6-3.fc37.x86_64 20/314
Installing : mesa-libglapi-22.3.3-2.fc38.x86_64 21/314
Installing : gnutls-3.7.8-11.fc38.x86_64 22/314
Installing : glib2-2.74.1-3.fc38.x86_64 23/314
Installing : libgudev-237-3.fc37.x86_64 24/314
Installing : libsoup3-3.2.2-1.fc38.x86_64 25/314
Installing : gssdp-1.6.2-1.fc38.x86_64 26/314
Installing : hdf5-1.12.1-10.fc37.x86_64 27/314
Installing : python3-rpm-macros-3.11-7.fc38.noarch 28/314
Installing : libvorbis-1:1.3.7-6.fc37.x86_64 29/314
Installing : xorg-x11-proto-devel-2022.2-2.fc38.noarch 30/314
Running scriptlet: xml-common-0.6.3-59.fc37.noarch 31/314
Installing : xml-common-0.6.3-59.fc37.noarch 31/314
Installing : vulkan-loader-1.3.231.1-2.fc38.x86_64 32/314
Installing : qt5-qttools-common-5.15.8-1.fc38.noarch 33/314
Installing : pcre2-utf16-10.42-1.fc38.x86_64 34/314
Installing : orc-0.4.33-1.fc38.x86_64 35/314
Installing : libxshmfence-1.3-11.fc37.x86_64 36/314
Installing : libwayland-server-1.21.0-1.fc37.x86_64 37/314
Installing : libdvdread-6.1.3-2.fc37.x86_64 38/314
Installing : libXau-1.0.11-1.fc38.x86_64 39/314
Installing : libxcb-1.13.1-11.fc38.x86_64 40/314
Installing : libICE-1.0.10-9.fc37.x86_64 41/314
Installing : kernel-headers-6.2.0-0.rc4.git0.1.fc38.x86_64 42/314
Installing : gsm-1.0.22-1.fc37.x86_64 43/314
Installing : gl-manpages-1.1-25.20190306.fc37.noarch 44/314
Installing : fonts-filesystem-1:2.0.5-10.fc38.noarch 45/314
Installing : flexiblas-3.3.0-1.fc38.x86_64 46/314
Installing : emacs-filesystem-1:28.2-1.fc38.noarch 47/314
Installing : alsa-lib-1.2.8-2.fc38.x86_64 48/314
Installing : graphite2-1.3.14-11.fc38.x86_64 49/314
Installing : freetype-2.12.1-3.fc37.x86_64 50/314
Installing : harfbuzz-6.0.0-2.fc38.x86_64 51/314
Installing : harfbuzz-icu-6.0.0-2.fc38.x86_64 52/314
Installing : graphite2-devel-1.3.14-11.fc38.x86_64 53/314
Installing : libSM-1.2.3-11.fc37.x86_64 54/314
Installing : xcb-util-0.4.1-1.fc38.x86_64 55/314
Installing : xcb-util-image-0.4.1-1.fc38.x86_64 56/314
Installing : xcb-util-keysyms-0.4.1-1.fc38.x86_64 57/314
Installing : xcb-util-renderutil-0.3.10-1.fc38.x86_64 58/314
Installing : xcb-util-wm-0.4.2-1.fc38.x86_64 59/314
Installing : libXau-devel-1.0.11-1.fc38.x86_64 60/314
Installing : libxcb-devel-1.13.1-11.fc38.x86_64 61/314
Installing : libdvdnav-6.1.1-4.fc37.x86_64 62/314
Installing : iso-codes-4.12.0-2.fc38.noarch 63/314
Installing : pyproject-rpm-macros-1.5.1-1.fc38.noarch 64/314
Installing : graphene-1.10.6-4.fc37.x86_64 65/314
Installing : json-glib-1.6.6-3.fc37.x86_64 66/314
Installing : shared-mime-info-2.2-2.fc37.x86_64 67/314
Running scriptlet: shared-mime-info-2.2-2.fc37.x86_64 67/314
Installing : gdk-pixbuf2-2.42.10-1.fc38.x86_64 68/314
Installing : libaec-devel-1.0.6-3.fc37.x86_64 69/314
Installing : libicu-devel-72.1-1.fc38.x86_64 70/314
Installing : hdf-libs-4.2.15-11.fc37.x86_64 71/314
Installing : cpp-13.0.1-0.1.fc38.x86_64 72/314
Installing : nss-softokn-freebl-3.87.0-1.fc38.x86_64 73/314
Installing : nss-softokn-3.87.0-1.fc38.x86_64 74/314
Installing : avahi-libs-0.8-19.fc38.x86_64 75/314
Installing : cups-libs-1:2.4.2-5.fc38.x86_64 76/314
Installing : libglvnd-opengl-1:1.6.0-1.fc38.x86_64 77/314
Installing : flac-libs-1.4.2-1.fc38.x86_64 78/314
Installing : libtheora-1:1.1.1-32.fc37.x86_64 79/314
Installing : libwayland-cursor-1.21.0-1.fc37.x86_64 80/314
Installing : libpng-devel-2:1.6.37-13.fc37.x86_64 81/314
Installing : xz-devel-5.2.9-1.fc38.x86_64 82/314
Installing : xkeyboard-config-2.36-3.fc38.noarch 83/314
Installing : libxkbcommon-1.5.0-1.fc38.x86_64 84/314
Installing : libxkbcommon-x11-1.5.0-1.fc38.x86_64 85/314
Installing : webrtc-audio-processing-0.3.1-9.fc37.x86_64 86/314
Installing : vulkan-headers-1.3.231.1-1.fc38.noarch 87/314
Installing : vulkan-loader-devel-1.3.231.1-2.fc38.x86_64 88/314
Installing : vim-filesystem-2:9.0.1221-1.fc38.noarch 89/314
Installing : sysprof-capture-devel-3.46.0-1.fc38.x86_64 90/314
Installing : soundtouch-2.3.1-3.fc37.x86_64 91/314
Installing : snappy-1.1.9-5.fc37.x86_64 92/314
Installing : blosc-1.21.2-1.fc38.x86_64 93/314
Installing : netcdf-4.9.0-4.fc38.x86_64 94/314
Installing : rhash-1.4.3-1.fc38.x86_64 95/314
Installing : qt-settings-37.0-1.fc38.noarch 96/314
Installing : qt5-qtbase-common-5.15.8-2.fc38.noarch 97/314
Running scriptlet: qt5-qtbase-5.15.8-2.fc38.x86_64 98/314
Installing : qt5-qtbase-5.15.8-2.fc38.x86_64 98/314
Running scriptlet: qt5-qtbase-5.15.8-2.fc38.x86_64 98/314
Installing : qt5-qtserialport-5.15.8-1.fc38.x86_64 99/314
Installing : qt5-qtwebsockets-5.15.8-1.fc38.x86_64 100/314
Installing : python-setuptools-wheel-65.5.1-1.fc38.noarch 101/314
Installing : python-qt5-rpm-macros-5.15.6-10.fc38.noarch 102/314
Installing : python-pip-wheel-22.3.1-1.fc38.noarch 103/314
Installing : pixman-0.40.0-6.fc37.x86_64 104/314
Installing : pcre2-utf32-10.42-1.fc38.x86_64 105/314
Installing : pcre2-devel-10.42-1.fc38.x86_64 106/314
Installing : pcre-8.45-1.fc37.2.x86_64 107/314
Installing : sord-0.16.10-1.fc37.x86_64 108/314
Installing : sratom-0.6.10-2.fc37.x86_64 109/314
Installing : lilv-libs-0.24.14-4.fc38.x86_64 110/314
Installing : openblas-0.3.21-4.fc38.x86_64 111/314
Installing : openblas-openmp-0.3.21-4.fc38.x86_64 112/314
Installing : flexiblas-netlib-3.3.0-1.fc38.x86_64 113/314
Installing : flexiblas-openblas-openmp-3.3.0-1.fc38.x86_64 114/314
Installing : openal-soft-1.22.2-6.fc38.x86_64 115/314
Installing : ncurses-6.4-2.20230114.fc38.x86_64 116/314
Installing : mtdev-1.1.6-4.fc37.x86_64 117/314
Installing : msgpack-3.1.0-10.fc37.x86_64 118/314
Installing : msgpack-devel-3.1.0-10.fc37.x86_64 119/314
Installing : mpg123-libs-1.31.2-1.fc38.x86_64 120/314
Installing : mpdecimal-2.5.1-4.fc37.x86_64 121/314
Installing : libwebp-1.3.0-1.fc38.x86_64 122/314
Installing : libwayland-egl-1.21.0-1.fc37.x86_64 123/314
Installing : libwacom-data-2.4.0-1.fc37.noarch 124/314
Installing : libvisual-1:0.4.0-37.fc38.x86_64 125/314
Installing : libuv-1:1.44.2-2.fc37.x86_64 126/314
Installing : libusb1-1.0.26-1.fc38.x86_64 127/314
Installing : libunwind-1.6.2-5.fc38.x86_64 128/314
Installing : libtool-ltdl-2.4.7-5.fc38.x86_64 129/314
Installing : libstemmer-2.2.0-4.fc38.x86_64 130/314
Installing : libstdc++-devel-13.0.1-0.1.fc38.x86_64 131/314
Installing : libsepol-devel-3.5-0.rc1.1.fc38.x86_64 132/314
Installing : libselinux-devel-3.5-0.rc1.1.fc38.1.x86_64 133/314
Installing : libglvnd-core-devel-1:1.6.0-1.fc38.x86_64 134/314
Installing : libffi-devel-3.4.4-1.fc38.x86_64 135/314
Installing : libdatrie-0.2.13-4.fc37.x86_64 136/314
Installing : libthai-0.1.29-3.fc37.x86_64 137/314
Installing : libblkid-devel-2.38.1-3.fc38.x86_64 138/314
Installing : libmount-devel-2.38.1-3.fc38.x86_64 139/314
Installing : libb2-0.98.1-7.fc37.x86_64 140/314
Installing : python3-3.11.1-3.fc38.x86_64 141/314
Installing : python3-libs-3.11.1-3.fc38.x86_64 142/314
Installing : gstreamer1-1.20.5-1.fc38.x86_64 143/314
Installing : cmake-rpm-macros-3.25.2-1.fc38.noarch 144/314
Installing : crypto-policies-scripts-20221215-2.gita4c31a3.fc 145/314
Installing : nss-sysinit-3.87.0-1.fc38.x86_64 146/314
Installing : nss-3.87.0-1.fc38.x86_64 147/314
Running scriptlet: nss-3.87.0-1.fc38.x86_64 147/314
Installing : libsrtp-2.3.0-9.fc37.x86_64 148/314
Installing : glib2-devel-2.74.1-3.fc38.x86_64 149/314
Installing : python3-dbus-1.3.2-2.fc38.x86_64 150/314
Installing : libwacom-2.4.0-1.fc37.x86_64 151/314
Installing : python3-msgpack-1.0.4-3.fc37.x86_64 152/314
Installing : python3-pyparsing-3.0.9-2.fc37.noarch 153/314
Installing : python3-packaging-21.3-7.fc38.noarch 154/314
Installing : python3-rpm-generators-14-1.fc38.noarch 155/314
Installing : python3-pyqt5-sip-12.11.0-2.fc37.x86_64 156/314
Installing : libasyncns-0.8-23.fc37.x86_64 157/314
Installing : libX11-common-1.8.3-2.fc38.noarch 158/314
Installing : libX11-1.8.3-2.fc38.x86_64 159/314
Installing : libXext-1.3.5-1.fc38.x86_64 160/314
Installing : libXrender-0.9.11-1.fc38.x86_64 161/314
Installing : libXfixes-6.0.0-4.fc37.x86_64 162/314
Installing : libXi-1.8-3.fc37.x86_64 163/314
Installing : libXv-1.0.11-17.fc37.x86_64 164/314
Installing : libXxf86vm-1.1.5-1.fc38.x86_64 165/314
Installing : libX11-devel-1.8.3-2.fc38.x86_64 166/314
Installing : lcms2-2.14-1.fc38.x86_64 167/314
Installing : lame-libs-3.100-13.fc37.x86_64 168/314
Installing : libsndfile-1.1.0-5.fc38.x86_64 169/314
Installing : pulseaudio-libs-16.1-2.fc38.x86_64 170/314
Installing : hwdata-0.366-1.fc38.noarch 171/314
Installing : libpciaccess-0.16-7.fc37.x86_64 172/314
Installing : libdrm-2.4.114-1.fc38.x86_64 173/314
Installing : mesa-libgbm-22.3.3-2.fc38.x86_64 174/314
Installing : libglvnd-egl-1:1.6.0-1.fc38.x86_64 175/314
Installing : mesa-libEGL-22.3.3-2.fc38.x86_64 176/314
Installing : mesa-libGL-22.3.3-2.fc38.x86_64 177/314
Installing : libglvnd-glx-1:1.6.0-1.fc38.x86_64 178/314
Installing : freeglut-3.4.0-1.fc38.x86_64 179/314
Installing : glx-utils-8.4.0-14.20210504git0f9e7d9.fc37.x86_6 180/314
Installing : libGLEW-2.2.0-3.fc37.x86_64 181/314
Installing : mesa-libGLU-9.0.1-7.fc37.x86_64 182/314
Installing : libglvnd-gles-1:1.6.0-1.fc38.x86_64 183/314
Installing : libglvnd-devel-1:1.6.0-1.fc38.x86_64 184/314
Installing : mesa-libGLU-devel-9.0.1-7.fc37.x86_64 185/314
Installing : mesa-libEGL-devel-22.3.3-2.fc38.x86_64 186/314
Installing : libpciaccess-devel-0.16-7.fc37.x86_64 187/314
Installing : libdrm-devel-2.4.114-1.fc38.x86_64 188/314
Installing : mesa-libGL-devel-22.3.3-2.fc38.x86_64 189/314
Running scriptlet: groff-base-1.22.4-10.fc37.x86_64 190/314
Installing : groff-base-1.22.4-10.fc37.x86_64 190/314
Running scriptlet: groff-base-1.22.4-10.fc37.x86_64 190/314
Installing : perl-Text-Tabs+Wrap-2021.0814-489.fc37.noarch 191/314
Installing : perl-if-0.61.000-494.fc38.noarch 192/314
Installing : perl-Time-Local-2:1.300-489.fc37.noarch 193/314
Installing : perl-File-Path-2.18-489.fc37.noarch 194/314
Installing : perl-Pod-Escapes-1:1.07-489.fc37.noarch 195/314
Installing : perl-Class-Struct-0.66-494.fc38.noarch 196/314
Installing : perl-POSIX-2.03-494.fc38.x86_64 197/314
Installing : perl-Term-ANSIColor-5.01-490.fc37.noarch 198/314
Installing : perl-IPC-Open3-1.22-494.fc38.noarch 199/314
Installing : perl-HTTP-Tiny-0.082-1.fc37.noarch 200/314
Installing : perl-File-Temp-1:0.231.100-489.fc37.noarch 201/314
Installing : perl-Term-Cap-1.17-489.fc37.noarch 202/314
Installing : perl-Pod-Simple-1:3.43-490.fc37.noarch 203/314
Installing : perl-Socket-4:2.036-1.fc38.x86_64 204/314
Installing : perl-SelectSaver-1.02-494.fc38.noarch 205/314
Installing : perl-Symbol-1.09-494.fc38.noarch 206/314
Installing : perl-File-stat-1.12-494.fc38.noarch 207/314
Installing : perl-podlators-1:5.01-1.fc38.noarch 208/314
Installing : perl-Pod-Perldoc-3.28.01-490.fc37.noarch 209/314
Installing : perl-Fcntl-1.15-494.fc38.x86_64 210/314
Installing : perl-Text-ParseWords-3.31-489.fc37.noarch 211/314
Installing : perl-mro-1.26-494.fc38.x86_64 212/314
Installing : perl-IO-1.50-494.fc38.x86_64 213/314
Installing : perl-overloading-0.02-494.fc38.noarch 214/314
Installing : perl-Pod-Usage-4:2.03-3.fc37.noarch 215/314
Installing : perl-Errno-1.36-494.fc38.x86_64 216/314
Installing : perl-File-Basename-2.85-494.fc38.noarch 217/314
Installing : perl-Getopt-Std-1.13-494.fc38.noarch 218/314
Installing : perl-MIME-Base64-3.16-489.fc37.x86_64 219/314
Installing : perl-Scalar-List-Utils-5:1.63-489.fc38.x86_64 220/314
Installing : perl-constant-1.33-490.fc37.noarch 221/314
Installing : perl-Storable-1:3.26-489.fc37.x86_64 222/314
Installing : perl-overload-1.35-494.fc38.noarch 223/314
Installing : perl-parent-1:0.239-1.fc38.noarch 224/314
Installing : perl-vars-1.05-494.fc38.noarch 225/314
Installing : perl-Getopt-Long-1:2.54-1.fc38.noarch 226/314
Installing : perl-Carp-1.52-489.fc37.noarch 227/314
Installing : perl-Exporter-5.77-489.fc37.noarch 228/314
Installing : perl-PathTools-3.84-489.fc37.x86_64 229/314
Installing : perl-DynaLoader-1.52-494.fc38.x86_64 230/314
Installing : perl-Encode-4:3.19-492.fc38.x86_64 231/314
Installing : perl-libs-4:5.36.0-494.fc38.x86_64 232/314
Installing : perl-interpreter-4:5.36.0-494.fc38.x86_64 233/314
Installing : perl-English-1.11-494.fc38.noarch 234/314
Installing : perl-File-Find-1.40-494.fc38.noarch 235/314
Installing : google-noto-fonts-common-20201206^1.git0c78c8329 236/314
Installing : google-noto-sans-vf-fonts-20201206^1.git0c78c832 237/314
Installing : langpacks-core-font-en-3.0-27.fc38.noarch 238/314
Installing : fontconfig-2.14.1-2.fc38.x86_64 239/314
Running scriptlet: fontconfig-2.14.1-2.fc38.x86_64 239/314
Installing : cairo-1.17.6-2.fc37.x86_64 240/314
Installing : cairo-gobject-1.17.6-2.fc37.x86_64 241/314
Installing : libXft-2.3.6-1.fc38.x86_64 242/314
Installing : gc-8.2.2-1.fc38.x86_64 243/314
Installing : guile22-2.2.7-6.fc37.x86_64 244/314
Installing : make-1:4.4-1.fc38.x86_64 245/314
Installing : fribidi-1.0.12-2.fc37.x86_64 246/314
Installing : pango-1.50.12-2.fc38.x86_64 247/314
Installing : librsvg2-2.55.1-3.fc38.x86_64 248/314
Installing : fdk-aac-free-2.0.0-9.fc37.x86_64 249/314
Installing : dbus-common-1:1.14.4-1.fc38.noarch 250/314
Running scriptlet: dbus-common-1:1.14.4-1.fc38.noarch 250/314
Running scriptlet: dbus-broker-32-1.fc37.x86_64 251/314
Installing : dbus-broker-32-1.fc37.x86_64 251/314
Running scriptlet: dbus-broker-32-1.fc37.x86_64 251/314
Installing : dbus-1:1.14.4-1.fc38.x86_64 252/314
Installing : gupnp-1.6.3-1.fc38.x86_64 253/314
Installing : gupnp-igd-1.2.0-7.fc38.x86_64 254/314
Installing : libnice-0.1.21-2.fc38.x86_64 255/314
Installing : cdparanoia-libs-10.2-40.fc37.x86_64 256/314
Installing : gstreamer1-plugins-base-1.20.5-1.fc38.x86_64 257/314
Installing : bzip2-devel-1.0.8-12.fc37.x86_64 258/314
Installing : bluez-libs-5.66-4.fc38.x86_64 259/314
Installing : annobin-docs-11.06-2.fc38.noarch 260/314
Installing : mesa-filesystem-22.3.3-2.fc38.x86_64 261/314
Installing : libva-2.17.0-1.fc38.x86_64 262/314
Installing : gstreamer1-plugins-bad-free-1.20.5-2.fc38.x86_64 263/314
Installing : libevdev-1.13.0-2.fc38.x86_64 264/314
Installing : libinput-1.22.1-2.fc38.x86_64 265/314
Running scriptlet: libinput-1.22.1-2.fc38.x86_64 265/314
Installing : qt5-qtbase-gui-5.15.8-2.fc38.x86_64 266/314
Installing : qt5-qtdeclarative-5.15.8-1.fc38.x86_64 267/314
Installing : python3-qt5-base-5.15.6-10.fc38.x86_64 268/314
Installing : qt5-qtconnectivity-5.15.8-1.fc38.x86_64 269/314
Installing : qt5-qtlocation-5.15.8-1.fc38.x86_64 270/314
Installing : qt5-qtmultimedia-5.15.8-1.fc38.x86_64 271/314
Installing : qt5-qtsensors-5.15.8-1.fc38.x86_64 272/314
Installing : qt5-qtwebchannel-5.15.8-1.fc38.x86_64 273/314
Installing : qt5-qtxmlpatterns-5.15.8-1.fc38.x86_64 274/314
Installing : qt5-qtsvg-5.15.8-1.fc38.x86_64 275/314
Installing : qt5-qttools-libs-designer-5.15.8-1.fc38.x86_64 276/314
Installing : qt5-qttools-libs-help-5.15.8-1.fc38.x86_64 277/314
Installing : qt5-qtx11extras-5.15.8-1.fc38.x86_64 278/314
Installing : python3-qt5-5.15.6-10.fc38.x86_64 279/314
Installing : libcurl-devel-7.87.0-3.fc38.x86_64 280/314
Installing : jsoncpp-1.9.5-4.fc38.x86_64 281/314
Installing : cmake-data-3.25.2-1.fc38.noarch 282/314
Installing : cmake-3.25.2-1.fc38.x86_64 283/314
Installing : glibc-headers-x86-2.36.9000-23.fc38.noarch 284/314
Installing : libxcrypt-devel-4.4.33-5.fc38.x86_64 285/314
Installing : glibc-devel-2.36.9000-23.fc38.x86_64 286/314
Installing : gcc-13.0.1-0.1.fc38.x86_64 287/314
Running scriptlet: gcc-13.0.1-0.1.fc38.x86_64 287/314
Installing : gcc-c++-13.0.1-0.1.fc38.x86_64 288/314
Installing : qt5-rpm-macros-5.15.8-1.fc38.noarch 289/314
Installing : qt5-qtbase-devel-5.15.8-2.fc38.x86_64 290/314
Installing : libquadmath-devel-13.0.1-0.1.fc38.x86_64 291/314
Installing : gcc-gfortran-13.0.1-0.1.fc38.x86_64 292/314
Installing : hdf5-devel-1.12.1-10.fc37.x86_64 293/314
Installing : brotli-1.0.9-11.fc38.x86_64 294/314
Installing : brotli-devel-1.0.9-11.fc38.x86_64 295/314
Installing : harfbuzz-devel-6.0.0-2.fc38.x86_64 296/314
Installing : freetype-devel-2.12.1-3.fc37.x86_64 297/314
Installing : netcdf-devel-4.9.0-4.fc38.x86_64 298/314
Installing : python3-qt5-devel-5.15.6-10.fc38.x86_64 299/314
Installing : annobin-plugin-gcc-11.06-2.fc38.x86_64 300/314
Running scriptlet: annobin-plugin-gcc-11.06-2.fc38.x86_64 300/314
Installing : gcc-plugin-annobin-13.0.1-0.1.fc38.x86_64 301/314
Installing : freeglut-devel-3.4.0-1.fc38.x86_64 302/314
Installing : glew-devel-2.2.0-3.fc37.x86_64 303/314
Installing : python3-devel-3.11.1-3.fc38.x86_64 304/314
Installing : python3-mmtf-1.1.2-18.fc37.noarch 305/314
Installing : python3-numpy-1:1.23.5-2.fc38.x86_64 306/314
Installing : python3-setuptools-65.5.1-1.fc38.noarch 307/314
Installing : python3-simplejson-3.18.1-1.fc38.x86_64 308/314
Installing : libappstream-glib-0.8.2-1.fc38.x86_64 309/314
Installing : mmtf-cpp-devel-1.1.0-1.fc38.x86_64 310/314
Installing : libxml2-devel-2.10.3-3.fc38.x86_64 311/314
Installing : desktop-file-utils-0.26-7.fc37.x86_64 312/314
Installing : catch-devel-2.13.8-3.fc37.x86_64 313/314
Installing : glm-devel-0.9.9.8-5.fc38.noarch 314/314
Running scriptlet: crypto-policies-scripts-20221215-2.gita4c31a3.fc 314/314
Running scriptlet: nss-3.87.0-1.fc38.x86_64 314/314
Running scriptlet: fontconfig-2.14.1-2.fc38.x86_64 314/314
Running scriptlet: glm-devel-0.9.9.8-5.fc38.noarch 314/314
Verifying : brotli-1.0.9-11.fc38.x86_64 1/314
Verifying : brotli-devel-1.0.9-11.fc38.x86_64 2/314
Verifying : cmake-3.25.2-1.fc38.x86_64 3/314
Verifying : cmake-data-3.25.2-1.fc38.noarch 4/314
Verifying : cmake-filesystem-3.25.2-1.fc38.x86_64 5/314
Verifying : cmake-rpm-macros-3.25.2-1.fc38.noarch 6/314
Verifying : crypto-policies-scripts-20221215-2.gita4c31a3.fc 7/314
Verifying : glib2-2.74.1-3.fc38.x86_64 8/314
Verifying : glib2-devel-2.74.1-3.fc38.x86_64 9/314
Verifying : glibc-devel-2.36.9000-23.fc38.x86_64 10/314
Verifying : glibc-headers-x86-2.36.9000-23.fc38.noarch 11/314
Verifying : gnutls-3.7.8-11.fc38.x86_64 12/314
Verifying : graphite2-1.3.14-11.fc38.x86_64 13/314
Verifying : graphite2-devel-1.3.14-11.fc38.x86_64 14/314
Verifying : gstreamer1-plugins-bad-free-1.20.5-2.fc38.x86_64 15/314
Verifying : jsoncpp-1.9.5-4.fc38.x86_64 16/314
Verifying : libcurl-devel-7.87.0-3.fc38.x86_64 17/314
Verifying : libevdev-1.13.0-2.fc38.x86_64 18/314
Verifying : libinput-1.22.1-2.fc38.x86_64 19/314
Verifying : libxcb-1.13.1-11.fc38.x86_64 20/314
Verifying : libxcb-devel-1.13.1-11.fc38.x86_64 21/314
Verifying : libxml2-devel-2.10.3-3.fc38.x86_64 22/314
Verifying : lilv-libs-0.24.14-4.fc38.x86_64 23/314
Verifying : mesa-filesystem-22.3.3-2.fc38.x86_64 24/314
Verifying : mesa-libEGL-22.3.3-2.fc38.x86_64 25/314
Verifying : mesa-libEGL-devel-22.3.3-2.fc38.x86_64 26/314
Verifying : mesa-libGL-22.3.3-2.fc38.x86_64 27/314
Verifying : mesa-libGL-devel-22.3.3-2.fc38.x86_64 28/314
Verifying : mesa-libgbm-22.3.3-2.fc38.x86_64 29/314
Verifying : mesa-libglapi-22.3.3-2.fc38.x86_64 30/314
Verifying : python3-dbus-1.3.2-2.fc38.x86_64 31/314
Verifying : python3-numpy-1:1.23.5-2.fc38.x86_64 32/314
Verifying : alsa-lib-1.2.8-2.fc38.x86_64 33/314
Verifying : annobin-docs-11.06-2.fc38.noarch 34/314
Verifying : annobin-plugin-gcc-11.06-2.fc38.x86_64 35/314
Verifying : avahi-libs-0.8-19.fc38.x86_64 36/314
Verifying : blosc-1.21.2-1.fc38.x86_64 37/314
Verifying : bluez-libs-5.66-4.fc38.x86_64 38/314
Verifying : bzip2-devel-1.0.8-12.fc37.x86_64 39/314
Verifying : cairo-1.17.6-2.fc37.x86_64 40/314
Verifying : cairo-gobject-1.17.6-2.fc37.x86_64 41/314
Verifying : catch-devel-2.13.8-3.fc37.x86_64 42/314
Verifying : cdparanoia-libs-10.2-40.fc37.x86_64 43/314
Verifying : cpp-13.0.1-0.1.fc38.x86_64 44/314
Verifying : cups-libs-1:2.4.2-5.fc38.x86_64 45/314
Verifying : dbus-1:1.14.4-1.fc38.x86_64 46/314
Verifying : dbus-broker-32-1.fc37.x86_64 47/314
Verifying : dbus-common-1:1.14.4-1.fc38.noarch 48/314
Verifying : dbus-libs-1:1.14.4-1.fc38.x86_64 49/314
Verifying : desktop-file-utils-0.26-7.fc37.x86_64 50/314
Verifying : emacs-filesystem-1:28.2-1.fc38.noarch 51/314
Verifying : expat-2.5.0-1.fc38.x86_64 52/314
Verifying : fdk-aac-free-2.0.0-9.fc37.x86_64 53/314
Verifying : flac-libs-1.4.2-1.fc38.x86_64 54/314
Verifying : flexiblas-3.3.0-1.fc38.x86_64 55/314
Verifying : flexiblas-netlib-3.3.0-1.fc38.x86_64 56/314
Verifying : flexiblas-openblas-openmp-3.3.0-1.fc38.x86_64 57/314
Verifying : fontconfig-2.14.1-2.fc38.x86_64 58/314
Verifying : fonts-filesystem-1:2.0.5-10.fc38.noarch 59/314
Verifying : freeglut-3.4.0-1.fc38.x86_64 60/314
Verifying : freeglut-devel-3.4.0-1.fc38.x86_64 61/314
Verifying : freetype-2.12.1-3.fc37.x86_64 62/314
Verifying : freetype-devel-2.12.1-3.fc37.x86_64 63/314
Verifying : fribidi-1.0.12-2.fc37.x86_64 64/314
Verifying : gc-8.2.2-1.fc38.x86_64 65/314
Verifying : gcc-13.0.1-0.1.fc38.x86_64 66/314
Verifying : gcc-c++-13.0.1-0.1.fc38.x86_64 67/314
Verifying : gcc-gfortran-13.0.1-0.1.fc38.x86_64 68/314
Verifying : gcc-plugin-annobin-13.0.1-0.1.fc38.x86_64 69/314
Verifying : gdk-pixbuf2-2.42.10-1.fc38.x86_64 70/314
Verifying : gl-manpages-1.1-25.20190306.fc37.noarch 71/314
Verifying : glew-devel-2.2.0-3.fc37.x86_64 72/314
Verifying : glm-devel-0.9.9.8-5.fc38.noarch 73/314
Verifying : glx-utils-8.4.0-14.20210504git0f9e7d9.fc37.x86_6 74/314
Verifying : google-noto-fonts-common-20201206^1.git0c78c8329 75/314
Verifying : google-noto-sans-vf-fonts-20201206^1.git0c78c832 76/314
Verifying : graphene-1.10.6-4.fc37.x86_64 77/314
Verifying : groff-base-1.22.4-10.fc37.x86_64 78/314
Verifying : gsm-1.0.22-1.fc37.x86_64 79/314
Verifying : gssdp-1.6.2-1.fc38.x86_64 80/314
Verifying : gstreamer1-1.20.5-1.fc38.x86_64 81/314
Verifying : gstreamer1-plugins-base-1.20.5-1.fc38.x86_64 82/314
Verifying : guile22-2.2.7-6.fc37.x86_64 83/314
Verifying : gupnp-1.6.3-1.fc38.x86_64 84/314
Verifying : gupnp-igd-1.2.0-7.fc38.x86_64 85/314
Verifying : harfbuzz-6.0.0-2.fc38.x86_64 86/314
Verifying : harfbuzz-devel-6.0.0-2.fc38.x86_64 87/314
Verifying : harfbuzz-icu-6.0.0-2.fc38.x86_64 88/314
Verifying : hdf-libs-4.2.15-11.fc37.x86_64 89/314
Verifying : hdf5-1.12.1-10.fc37.x86_64 90/314
Verifying : hdf5-devel-1.12.1-10.fc37.x86_64 91/314
Verifying : hwdata-0.366-1.fc38.noarch 92/314
Verifying : iso-codes-4.12.0-2.fc38.noarch 93/314
Verifying : json-glib-1.6.6-3.fc37.x86_64 94/314
Verifying : kernel-headers-6.2.0-0.rc4.git0.1.fc38.x86_64 95/314
Verifying : lame-libs-3.100-13.fc37.x86_64 96/314
Verifying : langpacks-core-font-en-3.0-27.fc38.noarch 97/314
Verifying : lcms2-2.14-1.fc38.x86_64 98/314
Verifying : libGLEW-2.2.0-3.fc37.x86_64 99/314
Verifying : libICE-1.0.10-9.fc37.x86_64 100/314
Verifying : libSM-1.2.3-11.fc37.x86_64 101/314
Verifying : libX11-1.8.3-2.fc38.x86_64 102/314
Verifying : libX11-common-1.8.3-2.fc38.noarch 103/314
Verifying : libX11-devel-1.8.3-2.fc38.x86_64 104/314
Verifying : libX11-xcb-1.8.3-2.fc38.x86_64 105/314
Verifying : libXau-1.0.11-1.fc38.x86_64 106/314
Verifying : libXau-devel-1.0.11-1.fc38.x86_64 107/314
Verifying : libXext-1.3.5-1.fc38.x86_64 108/314
Verifying : libXfixes-6.0.0-4.fc37.x86_64 109/314
Verifying : libXft-2.3.6-1.fc38.x86_64 110/314
Verifying : libXi-1.8-3.fc37.x86_64 111/314
Verifying : libXrender-0.9.11-1.fc38.x86_64 112/314
Verifying : libXv-1.0.11-17.fc37.x86_64 113/314
Verifying : libXxf86vm-1.1.5-1.fc38.x86_64 114/314
Verifying : libaec-1.0.6-3.fc37.x86_64 115/314
Verifying : libaec-devel-1.0.6-3.fc37.x86_64 116/314
Verifying : libappstream-glib-0.8.2-1.fc38.x86_64 117/314
Verifying : libasyncns-0.8-23.fc37.x86_64 118/314
Verifying : libb2-0.98.1-7.fc37.x86_64 119/314
Verifying : libblkid-devel-2.38.1-3.fc38.x86_64 120/314
Verifying : libdatrie-0.2.13-4.fc37.x86_64 121/314
Verifying : libdrm-2.4.114-1.fc38.x86_64 122/314
Verifying : libdrm-devel-2.4.114-1.fc38.x86_64 123/314
Verifying : libdvdnav-6.1.1-4.fc37.x86_64 124/314
Verifying : libdvdread-6.1.3-2.fc37.x86_64 125/314
Verifying : libffi-devel-3.4.4-1.fc38.x86_64 126/314
Verifying : libgfortran-13.0.1-0.1.fc38.x86_64 127/314
Verifying : libglvnd-1:1.6.0-1.fc38.x86_64 128/314
Verifying : libglvnd-core-devel-1:1.6.0-1.fc38.x86_64 129/314
Verifying : libglvnd-devel-1:1.6.0-1.fc38.x86_64 130/314
Verifying : libglvnd-egl-1:1.6.0-1.fc38.x86_64 131/314
Verifying : libglvnd-gles-1:1.6.0-1.fc38.x86_64 132/314
Verifying : libglvnd-glx-1:1.6.0-1.fc38.x86_64 133/314
Verifying : libglvnd-opengl-1:1.6.0-1.fc38.x86_64 134/314
Verifying : libgudev-237-3.fc37.x86_64 135/314
Verifying : libicu-72.1-1.fc38.x86_64 136/314
Verifying : libicu-devel-72.1-1.fc38.x86_64 137/314
Verifying : libjpeg-turbo-2.1.4-1.fc38.x86_64 138/314
Verifying : libmount-devel-2.38.1-3.fc38.x86_64 139/314
Verifying : libmpc-1.3.1-1.fc38.x86_64 140/314
Verifying : libnice-0.1.21-2.fc38.x86_64 141/314
Verifying : libogg-2:1.3.5-4.fc37.x86_64 142/314
Verifying : libpciaccess-0.16-7.fc37.x86_64 143/314
Verifying : libpciaccess-devel-0.16-7.fc37.x86_64 144/314
Verifying : libpng-2:1.6.37-13.fc37.x86_64 145/314
Verifying : libpng-devel-2:1.6.37-13.fc37.x86_64 146/314
Verifying : libquadmath-13.0.1-0.1.fc38.x86_64 147/314
Verifying : libquadmath-devel-13.0.1-0.1.fc38.x86_64 148/314
Verifying : librsvg2-2.55.1-3.fc38.x86_64 149/314
Verifying : libselinux-devel-3.5-0.rc1.1.fc38.1.x86_64 150/314
Verifying : libsepol-devel-3.5-0.rc1.1.fc38.x86_64 151/314
Verifying : libsndfile-1.1.0-5.fc38.x86_64 152/314
Verifying : libsoup3-3.2.2-1.fc38.x86_64 153/314
Verifying : libsrtp-2.3.0-9.fc37.x86_64 154/314
Verifying : libstdc++-devel-13.0.1-0.1.fc38.x86_64 155/314
Verifying : libstemmer-2.2.0-4.fc38.x86_64 156/314
Verifying : libthai-0.1.29-3.fc37.x86_64 157/314
Verifying : libtheora-1:1.1.1-32.fc37.x86_64 158/314
Verifying : libtool-ltdl-2.4.7-5.fc38.x86_64 159/314
Verifying : libunwind-1.6.2-5.fc38.x86_64 160/314
Verifying : libusb1-1.0.26-1.fc38.x86_64 161/314
Verifying : libuv-1:1.44.2-2.fc37.x86_64 162/314
Verifying : libva-2.17.0-1.fc38.x86_64 163/314
Verifying : libvisual-1:0.4.0-37.fc38.x86_64 164/314
Verifying : libvorbis-1:1.3.7-6.fc37.x86_64 165/314
Verifying : libwacom-2.4.0-1.fc37.x86_64 166/314
Verifying : libwacom-data-2.4.0-1.fc37.noarch 167/314
Verifying : libwayland-client-1.21.0-1.fc37.x86_64 168/314
Verifying : libwayland-cursor-1.21.0-1.fc37.x86_64 169/314
Verifying : libwayland-egl-1.21.0-1.fc37.x86_64 170/314
Verifying : libwayland-server-1.21.0-1.fc37.x86_64 171/314
Verifying : libwebp-1.3.0-1.fc38.x86_64 172/314
Verifying : libxcrypt-devel-4.4.33-5.fc38.x86_64 173/314
Verifying : libxkbcommon-1.5.0-1.fc38.x86_64 174/314
Verifying : libxkbcommon-x11-1.5.0-1.fc38.x86_64 175/314
Verifying : libxshmfence-1.3-11.fc37.x86_64 176/314
Verifying : make-1:4.4-1.fc38.x86_64 177/314
Verifying : mesa-libGLU-9.0.1-7.fc37.x86_64 178/314
Verifying : mesa-libGLU-devel-9.0.1-7.fc37.x86_64 179/314
Verifying : mmtf-cpp-devel-1.1.0-1.fc38.x86_64 180/314
Verifying : mpdecimal-2.5.1-4.fc37.x86_64 181/314
Verifying : mpg123-libs-1.31.2-1.fc38.x86_64 182/314
Verifying : msgpack-3.1.0-10.fc37.x86_64 183/314
Verifying : msgpack-devel-3.1.0-10.fc37.x86_64 184/314
Verifying : mtdev-1.1.6-4.fc37.x86_64 185/314
Verifying : ncurses-6.4-2.20230114.fc38.x86_64 186/314
Verifying : netcdf-4.9.0-4.fc38.x86_64 187/314
Verifying : netcdf-devel-4.9.0-4.fc38.x86_64 188/314
Verifying : nspr-4.35.0-3.fc38.x86_64 189/314
Verifying : nss-3.87.0-1.fc38.x86_64 190/314
Verifying : nss-softokn-3.87.0-1.fc38.x86_64 191/314
Verifying : nss-softokn-freebl-3.87.0-1.fc38.x86_64 192/314
Verifying : nss-sysinit-3.87.0-1.fc38.x86_64 193/314
Verifying : nss-util-3.87.0-1.fc38.x86_64 194/314
Verifying : openal-soft-1.22.2-6.fc38.x86_64 195/314
Verifying : openblas-0.3.21-4.fc38.x86_64 196/314
Verifying : openblas-openmp-0.3.21-4.fc38.x86_64 197/314
Verifying : opus-1.3.1-11.fc37.x86_64 198/314
Verifying : orc-0.4.33-1.fc38.x86_64 199/314
Verifying : pango-1.50.12-2.fc38.x86_64 200/314
Verifying : pcre-8.45-1.fc37.2.x86_64 201/314
Verifying : pcre2-devel-10.42-1.fc38.x86_64 202/314
Verifying : pcre2-utf16-10.42-1.fc38.x86_64 203/314
Verifying : pcre2-utf32-10.42-1.fc38.x86_64 204/314
Verifying : perl-Carp-1.52-489.fc37.noarch 205/314
Verifying : perl-Class-Struct-0.66-494.fc38.noarch 206/314
Verifying : perl-DynaLoader-1.52-494.fc38.x86_64 207/314
Verifying : perl-Encode-4:3.19-492.fc38.x86_64 208/314
Verifying : perl-English-1.11-494.fc38.noarch 209/314
Verifying : perl-Errno-1.36-494.fc38.x86_64 210/314
Verifying : perl-Exporter-5.77-489.fc37.noarch 211/314
Verifying : perl-Fcntl-1.15-494.fc38.x86_64 212/314
Verifying : perl-File-Basename-2.85-494.fc38.noarch 213/314
Verifying : perl-File-Find-1.40-494.fc38.noarch 214/314
Verifying : perl-File-Path-2.18-489.fc37.noarch 215/314
Verifying : perl-File-Temp-1:0.231.100-489.fc37.noarch 216/314
Verifying : perl-File-stat-1.12-494.fc38.noarch 217/314
Verifying : perl-Getopt-Long-1:2.54-1.fc38.noarch 218/314
Verifying : perl-Getopt-Std-1.13-494.fc38.noarch 219/314
Verifying : perl-HTTP-Tiny-0.082-1.fc37.noarch 220/314
Verifying : perl-IO-1.50-494.fc38.x86_64 221/314
Verifying : perl-IPC-Open3-1.22-494.fc38.noarch 222/314
Verifying : perl-MIME-Base64-3.16-489.fc37.x86_64 223/314
Verifying : perl-POSIX-2.03-494.fc38.x86_64 224/314
Verifying : perl-PathTools-3.84-489.fc37.x86_64 225/314
Verifying : perl-Pod-Escapes-1:1.07-489.fc37.noarch 226/314
Verifying : perl-Pod-Perldoc-3.28.01-490.fc37.noarch 227/314
Verifying : perl-Pod-Simple-1:3.43-490.fc37.noarch 228/314
Verifying : perl-Pod-Usage-4:2.03-3.fc37.noarch 229/314
Verifying : perl-Scalar-List-Utils-5:1.63-489.fc38.x86_64 230/314
Verifying : perl-SelectSaver-1.02-494.fc38.noarch 231/314
Verifying : perl-Socket-4:2.036-1.fc38.x86_64 232/314
Verifying : perl-Storable-1:3.26-489.fc37.x86_64 233/314
Verifying : perl-Symbol-1.09-494.fc38.noarch 234/314
Verifying : perl-Term-ANSIColor-5.01-490.fc37.noarch 235/314
Verifying : perl-Term-Cap-1.17-489.fc37.noarch 236/314
Verifying : perl-Text-ParseWords-3.31-489.fc37.noarch 237/314
Verifying : perl-Text-Tabs+Wrap-2021.0814-489.fc37.noarch 238/314
Verifying : perl-Time-Local-2:1.300-489.fc37.noarch 239/314
Verifying : perl-constant-1.33-490.fc37.noarch 240/314
Verifying : perl-if-0.61.000-494.fc38.noarch 241/314
Verifying : perl-interpreter-4:5.36.0-494.fc38.x86_64 242/314
Verifying : perl-libs-4:5.36.0-494.fc38.x86_64 243/314
Verifying : perl-mro-1.26-494.fc38.x86_64 244/314
Verifying : perl-overload-1.35-494.fc38.noarch 245/314
Verifying : perl-overloading-0.02-494.fc38.noarch 246/314
Verifying : perl-parent-1:0.239-1.fc38.noarch 247/314
Verifying : perl-podlators-1:5.01-1.fc38.noarch 248/314
Verifying : perl-vars-1.05-494.fc38.noarch 249/314
Verifying : pixman-0.40.0-6.fc37.x86_64 250/314
Verifying : pulseaudio-libs-16.1-2.fc38.x86_64 251/314
Verifying : pyproject-rpm-macros-1.5.1-1.fc38.noarch 252/314
Verifying : python-pip-wheel-22.3.1-1.fc38.noarch 253/314
Verifying : python-qt5-rpm-macros-5.15.6-10.fc38.noarch 254/314
Verifying : python-rpm-macros-3.11-7.fc38.noarch 255/314
Verifying : python-setuptools-wheel-65.5.1-1.fc38.noarch 256/314
Verifying : python3-3.11.1-3.fc38.x86_64 257/314
Verifying : python3-devel-3.11.1-3.fc38.x86_64 258/314
Verifying : python3-libs-3.11.1-3.fc38.x86_64 259/314
Verifying : python3-mmtf-1.1.2-18.fc37.noarch 260/314
Verifying : python3-msgpack-1.0.4-3.fc37.x86_64 261/314
Verifying : python3-packaging-21.3-7.fc38.noarch 262/314
Verifying : python3-pyparsing-3.0.9-2.fc37.noarch 263/314
Verifying : python3-pyqt5-sip-12.11.0-2.fc37.x86_64 264/314
Verifying : python3-qt5-5.15.6-10.fc38.x86_64 265/314
Verifying : python3-qt5-base-5.15.6-10.fc38.x86_64 266/314
Verifying : python3-qt5-devel-5.15.6-10.fc38.x86_64 267/314
Verifying : python3-rpm-generators-14-1.fc38.noarch 268/314
Verifying : python3-rpm-macros-3.11-7.fc38.noarch 269/314
Verifying : python3-setuptools-65.5.1-1.fc38.noarch 270/314
Verifying : python3-simplejson-3.18.1-1.fc38.x86_64 271/314
Verifying : qt-settings-37.0-1.fc38.noarch 272/314
Verifying : qt5-qtbase-5.15.8-2.fc38.x86_64 273/314
Verifying : qt5-qtbase-common-5.15.8-2.fc38.noarch 274/314
Verifying : qt5-qtbase-devel-5.15.8-2.fc38.x86_64 275/314
Verifying : qt5-qtbase-gui-5.15.8-2.fc38.x86_64 276/314
Verifying : qt5-qtconnectivity-5.15.8-1.fc38.x86_64 277/314
Verifying : qt5-qtdeclarative-5.15.8-1.fc38.x86_64 278/314
Verifying : qt5-qtlocation-5.15.8-1.fc38.x86_64 279/314
Verifying : qt5-qtmultimedia-5.15.8-1.fc38.x86_64 280/314
Verifying : qt5-qtsensors-5.15.8-1.fc38.x86_64 281/314
Verifying : qt5-qtserialport-5.15.8-1.fc38.x86_64 282/314
Verifying : qt5-qtsvg-5.15.8-1.fc38.x86_64 283/314
Verifying : qt5-qttools-common-5.15.8-1.fc38.noarch 284/314
Verifying : qt5-qttools-libs-designer-5.15.8-1.fc38.x86_64 285/314
Verifying : qt5-qttools-libs-help-5.15.8-1.fc38.x86_64 286/314
Verifying : qt5-qtwebchannel-5.15.8-1.fc38.x86_64 287/314
Verifying : qt5-qtwebsockets-5.15.8-1.fc38.x86_64 288/314
Verifying : qt5-qtx11extras-5.15.8-1.fc38.x86_64 289/314
Verifying : qt5-qtxmlpatterns-5.15.8-1.fc38.x86_64 290/314
Verifying : qt5-rpm-macros-5.15.8-1.fc38.noarch 291/314
Verifying : rhash-1.4.3-1.fc38.x86_64 292/314
Verifying : serd-0.30.12-2.fc37.x86_64 293/314
Verifying : shared-mime-info-2.2-2.fc37.x86_64 294/314
Verifying : snappy-1.1.9-5.fc37.x86_64 295/314
Verifying : sord-0.16.10-1.fc37.x86_64 296/314
Verifying : soundtouch-2.3.1-3.fc37.x86_64 297/314
Verifying : sratom-0.6.10-2.fc37.x86_64 298/314
Verifying : sysprof-capture-devel-3.46.0-1.fc38.x86_64 299/314
Verifying : vim-filesystem-2:9.0.1221-1.fc38.noarch 300/314
Verifying : vulkan-headers-1.3.231.1-1.fc38.noarch 301/314
Verifying : vulkan-loader-1.3.231.1-2.fc38.x86_64 302/314
Verifying : vulkan-loader-devel-1.3.231.1-2.fc38.x86_64 303/314
Verifying : webrtc-audio-processing-0.3.1-9.fc37.x86_64 304/314
Verifying : xcb-util-0.4.1-1.fc38.x86_64 305/314
Verifying : xcb-util-image-0.4.1-1.fc38.x86_64 306/314
Verifying : xcb-util-keysyms-0.4.1-1.fc38.x86_64 307/314
Verifying : xcb-util-renderutil-0.3.10-1.fc38.x86_64 308/314
Verifying : xcb-util-wm-0.4.2-1.fc38.x86_64 309/314
Verifying : xkeyboard-config-2.36-3.fc38.noarch 310/314
Verifying : xml-common-0.6.3-59.fc37.noarch 311/314
Verifying : xorg-x11-proto-devel-2022.2-2.fc38.noarch 312/314
Verifying : xz-devel-5.2.9-1.fc38.x86_64 313/314
Verifying : zlib-devel-1.2.13-2.fc38.x86_64 314/314
Installed:
alsa-lib-1.2.8-2.fc38.x86_64
annobin-docs-11.06-2.fc38.noarch
annobin-plugin-gcc-11.06-2.fc38.x86_64
avahi-libs-0.8-19.fc38.x86_64
blosc-1.21.2-1.fc38.x86_64
bluez-libs-5.66-4.fc38.x86_64
brotli-1.0.9-11.fc38.x86_64
brotli-devel-1.0.9-11.fc38.x86_64
bzip2-devel-1.0.8-12.fc37.x86_64
cairo-1.17.6-2.fc37.x86_64
cairo-gobject-1.17.6-2.fc37.x86_64
catch-devel-2.13.8-3.fc37.x86_64
cdparanoia-libs-10.2-40.fc37.x86_64
cmake-3.25.2-1.fc38.x86_64
cmake-data-3.25.2-1.fc38.noarch
cmake-filesystem-3.25.2-1.fc38.x86_64
cmake-rpm-macros-3.25.2-1.fc38.noarch
cpp-13.0.1-0.1.fc38.x86_64
crypto-policies-scripts-20221215-2.gita4c31a3.fc38.noarch
cups-libs-1:2.4.2-5.fc38.x86_64
dbus-1:1.14.4-1.fc38.x86_64
dbus-broker-32-1.fc37.x86_64
dbus-common-1:1.14.4-1.fc38.noarch
dbus-libs-1:1.14.4-1.fc38.x86_64
desktop-file-utils-0.26-7.fc37.x86_64
emacs-filesystem-1:28.2-1.fc38.noarch
expat-2.5.0-1.fc38.x86_64
fdk-aac-free-2.0.0-9.fc37.x86_64
flac-libs-1.4.2-1.fc38.x86_64
flexiblas-3.3.0-1.fc38.x86_64
flexiblas-netlib-3.3.0-1.fc38.x86_64
flexiblas-openblas-openmp-3.3.0-1.fc38.x86_64
fontconfig-2.14.1-2.fc38.x86_64
fonts-filesystem-1:2.0.5-10.fc38.noarch
freeglut-3.4.0-1.fc38.x86_64
freeglut-devel-3.4.0-1.fc38.x86_64
freetype-2.12.1-3.fc37.x86_64
freetype-devel-2.12.1-3.fc37.x86_64
fribidi-1.0.12-2.fc37.x86_64
gc-8.2.2-1.fc38.x86_64
gcc-13.0.1-0.1.fc38.x86_64
gcc-c++-13.0.1-0.1.fc38.x86_64
gcc-gfortran-13.0.1-0.1.fc38.x86_64
gcc-plugin-annobin-13.0.1-0.1.fc38.x86_64
gdk-pixbuf2-2.42.10-1.fc38.x86_64
gl-manpages-1.1-25.20190306.fc37.noarch
glew-devel-2.2.0-3.fc37.x86_64
glib2-2.74.1-3.fc38.x86_64
glib2-devel-2.74.1-3.fc38.x86_64
glibc-devel-2.36.9000-23.fc38.x86_64
glibc-headers-x86-2.36.9000-23.fc38.noarch
glm-devel-0.9.9.8-5.fc38.noarch
glx-utils-8.4.0-14.20210504git0f9e7d9.fc37.x86_64
gnutls-3.7.8-11.fc38.x86_64
google-noto-fonts-common-20201206^1.git0c78c8329-9.fc38.noarch
google-noto-sans-vf-fonts-20201206^1.git0c78c8329-9.fc38.noarch
graphene-1.10.6-4.fc37.x86_64
graphite2-1.3.14-11.fc38.x86_64
graphite2-devel-1.3.14-11.fc38.x86_64
groff-base-1.22.4-10.fc37.x86_64
gsm-1.0.22-1.fc37.x86_64
gssdp-1.6.2-1.fc38.x86_64
gstreamer1-1.20.5-1.fc38.x86_64
gstreamer1-plugins-bad-free-1.20.5-2.fc38.x86_64
gstreamer1-plugins-base-1.20.5-1.fc38.x86_64
guile22-2.2.7-6.fc37.x86_64
gupnp-1.6.3-1.fc38.x86_64
gupnp-igd-1.2.0-7.fc38.x86_64
harfbuzz-6.0.0-2.fc38.x86_64
harfbuzz-devel-6.0.0-2.fc38.x86_64
harfbuzz-icu-6.0.0-2.fc38.x86_64
hdf-libs-4.2.15-11.fc37.x86_64
hdf5-1.12.1-10.fc37.x86_64
hdf5-devel-1.12.1-10.fc37.x86_64
hwdata-0.366-1.fc38.noarch
iso-codes-4.12.0-2.fc38.noarch
json-glib-1.6.6-3.fc37.x86_64
jsoncpp-1.9.5-4.fc38.x86_64
kernel-headers-6.2.0-0.rc4.git0.1.fc38.x86_64
lame-libs-3.100-13.fc37.x86_64
langpacks-core-font-en-3.0-27.fc38.noarch
lcms2-2.14-1.fc38.x86_64
libGLEW-2.2.0-3.fc37.x86_64
libICE-1.0.10-9.fc37.x86_64
libSM-1.2.3-11.fc37.x86_64
libX11-1.8.3-2.fc38.x86_64
libX11-common-1.8.3-2.fc38.noarch
libX11-devel-1.8.3-2.fc38.x86_64
libX11-xcb-1.8.3-2.fc38.x86_64
libXau-1.0.11-1.fc38.x86_64
libXau-devel-1.0.11-1.fc38.x86_64
libXext-1.3.5-1.fc38.x86_64
libXfixes-6.0.0-4.fc37.x86_64
libXft-2.3.6-1.fc38.x86_64
libXi-1.8-3.fc37.x86_64
libXrender-0.9.11-1.fc38.x86_64
libXv-1.0.11-17.fc37.x86_64
libXxf86vm-1.1.5-1.fc38.x86_64
libaec-1.0.6-3.fc37.x86_64
libaec-devel-1.0.6-3.fc37.x86_64
libappstream-glib-0.8.2-1.fc38.x86_64
libasyncns-0.8-23.fc37.x86_64
libb2-0.98.1-7.fc37.x86_64
libblkid-devel-2.38.1-3.fc38.x86_64
libcurl-devel-7.87.0-3.fc38.x86_64
libdatrie-0.2.13-4.fc37.x86_64
libdrm-2.4.114-1.fc38.x86_64
libdrm-devel-2.4.114-1.fc38.x86_64
libdvdnav-6.1.1-4.fc37.x86_64
libdvdread-6.1.3-2.fc37.x86_64
libevdev-1.13.0-2.fc38.x86_64
libffi-devel-3.4.4-1.fc38.x86_64
libgfortran-13.0.1-0.1.fc38.x86_64
libglvnd-1:1.6.0-1.fc38.x86_64
libglvnd-core-devel-1:1.6.0-1.fc38.x86_64
libglvnd-devel-1:1.6.0-1.fc38.x86_64
libglvnd-egl-1:1.6.0-1.fc38.x86_64
libglvnd-gles-1:1.6.0-1.fc38.x86_64
libglvnd-glx-1:1.6.0-1.fc38.x86_64
libglvnd-opengl-1:1.6.0-1.fc38.x86_64
libgudev-237-3.fc37.x86_64
libicu-72.1-1.fc38.x86_64
libicu-devel-72.1-1.fc38.x86_64
libinput-1.22.1-2.fc38.x86_64
libjpeg-turbo-2.1.4-1.fc38.x86_64
libmount-devel-2.38.1-3.fc38.x86_64
libmpc-1.3.1-1.fc38.x86_64
libnice-0.1.21-2.fc38.x86_64
libogg-2:1.3.5-4.fc37.x86_64
libpciaccess-0.16-7.fc37.x86_64
libpciaccess-devel-0.16-7.fc37.x86_64
libpng-2:1.6.37-13.fc37.x86_64
libpng-devel-2:1.6.37-13.fc37.x86_64
libquadmath-13.0.1-0.1.fc38.x86_64
libquadmath-devel-13.0.1-0.1.fc38.x86_64
librsvg2-2.55.1-3.fc38.x86_64
libselinux-devel-3.5-0.rc1.1.fc38.1.x86_64
libsepol-devel-3.5-0.rc1.1.fc38.x86_64
libsndfile-1.1.0-5.fc38.x86_64
libsoup3-3.2.2-1.fc38.x86_64
libsrtp-2.3.0-9.fc37.x86_64
libstdc++-devel-13.0.1-0.1.fc38.x86_64
libstemmer-2.2.0-4.fc38.x86_64
libthai-0.1.29-3.fc37.x86_64
libtheora-1:1.1.1-32.fc37.x86_64
libtool-ltdl-2.4.7-5.fc38.x86_64
libunwind-1.6.2-5.fc38.x86_64
libusb1-1.0.26-1.fc38.x86_64
libuv-1:1.44.2-2.fc37.x86_64
libva-2.17.0-1.fc38.x86_64
libvisual-1:0.4.0-37.fc38.x86_64
libvorbis-1:1.3.7-6.fc37.x86_64
libwacom-2.4.0-1.fc37.x86_64
libwacom-data-2.4.0-1.fc37.noarch
libwayland-client-1.21.0-1.fc37.x86_64
libwayland-cursor-1.21.0-1.fc37.x86_64
libwayland-egl-1.21.0-1.fc37.x86_64
libwayland-server-1.21.0-1.fc37.x86_64
libwebp-1.3.0-1.fc38.x86_64
libxcb-1.13.1-11.fc38.x86_64
libxcb-devel-1.13.1-11.fc38.x86_64
libxcrypt-devel-4.4.33-5.fc38.x86_64
libxkbcommon-1.5.0-1.fc38.x86_64
libxkbcommon-x11-1.5.0-1.fc38.x86_64
libxml2-devel-2.10.3-3.fc38.x86_64
libxshmfence-1.3-11.fc37.x86_64
lilv-libs-0.24.14-4.fc38.x86_64
make-1:4.4-1.fc38.x86_64
mesa-filesystem-22.3.3-2.fc38.x86_64
mesa-libEGL-22.3.3-2.fc38.x86_64
mesa-libEGL-devel-22.3.3-2.fc38.x86_64
mesa-libGL-22.3.3-2.fc38.x86_64
mesa-libGL-devel-22.3.3-2.fc38.x86_64
mesa-libGLU-9.0.1-7.fc37.x86_64
mesa-libGLU-devel-9.0.1-7.fc37.x86_64
mesa-libgbm-22.3.3-2.fc38.x86_64
mesa-libglapi-22.3.3-2.fc38.x86_64
mmtf-cpp-devel-1.1.0-1.fc38.x86_64
mpdecimal-2.5.1-4.fc37.x86_64
mpg123-libs-1.31.2-1.fc38.x86_64
msgpack-3.1.0-10.fc37.x86_64
msgpack-devel-3.1.0-10.fc37.x86_64
mtdev-1.1.6-4.fc37.x86_64
ncurses-6.4-2.20230114.fc38.x86_64
netcdf-4.9.0-4.fc38.x86_64
netcdf-devel-4.9.0-4.fc38.x86_64
nspr-4.35.0-3.fc38.x86_64
nss-3.87.0-1.fc38.x86_64
nss-softokn-3.87.0-1.fc38.x86_64
nss-softokn-freebl-3.87.0-1.fc38.x86_64
nss-sysinit-3.87.0-1.fc38.x86_64
nss-util-3.87.0-1.fc38.x86_64
openal-soft-1.22.2-6.fc38.x86_64
openblas-0.3.21-4.fc38.x86_64
openblas-openmp-0.3.21-4.fc38.x86_64
opus-1.3.1-11.fc37.x86_64
orc-0.4.33-1.fc38.x86_64
pango-1.50.12-2.fc38.x86_64
pcre-8.45-1.fc37.2.x86_64
pcre2-devel-10.42-1.fc38.x86_64
pcre2-utf16-10.42-1.fc38.x86_64
pcre2-utf32-10.42-1.fc38.x86_64
perl-Carp-1.52-489.fc37.noarch
perl-Class-Struct-0.66-494.fc38.noarch
perl-DynaLoader-1.52-494.fc38.x86_64
perl-Encode-4:3.19-492.fc38.x86_64
perl-English-1.11-494.fc38.noarch
perl-Errno-1.36-494.fc38.x86_64
perl-Exporter-5.77-489.fc37.noarch
perl-Fcntl-1.15-494.fc38.x86_64
perl-File-Basename-2.85-494.fc38.noarch
perl-File-Find-1.40-494.fc38.noarch
perl-File-Path-2.18-489.fc37.noarch
perl-File-Temp-1:0.231.100-489.fc37.noarch
perl-File-stat-1.12-494.fc38.noarch
perl-Getopt-Long-1:2.54-1.fc38.noarch
perl-Getopt-Std-1.13-494.fc38.noarch
perl-HTTP-Tiny-0.082-1.fc37.noarch
perl-IO-1.50-494.fc38.x86_64
perl-IPC-Open3-1.22-494.fc38.noarch
perl-MIME-Base64-3.16-489.fc37.x86_64
perl-POSIX-2.03-494.fc38.x86_64
perl-PathTools-3.84-489.fc37.x86_64
perl-Pod-Escapes-1:1.07-489.fc37.noarch
perl-Pod-Perldoc-3.28.01-490.fc37.noarch
perl-Pod-Simple-1:3.43-490.fc37.noarch
perl-Pod-Usage-4:2.03-3.fc37.noarch
perl-Scalar-List-Utils-5:1.63-489.fc38.x86_64
perl-SelectSaver-1.02-494.fc38.noarch
perl-Socket-4:2.036-1.fc38.x86_64
perl-Storable-1:3.26-489.fc37.x86_64
perl-Symbol-1.09-494.fc38.noarch
perl-Term-ANSIColor-5.01-490.fc37.noarch
perl-Term-Cap-1.17-489.fc37.noarch
perl-Text-ParseWords-3.31-489.fc37.noarch
perl-Text-Tabs+Wrap-2021.0814-489.fc37.noarch
perl-Time-Local-2:1.300-489.fc37.noarch
perl-constant-1.33-490.fc37.noarch
perl-if-0.61.000-494.fc38.noarch
perl-interpreter-4:5.36.0-494.fc38.x86_64
perl-libs-4:5.36.0-494.fc38.x86_64
perl-mro-1.26-494.fc38.x86_64
perl-overload-1.35-494.fc38.noarch
perl-overloading-0.02-494.fc38.noarch
perl-parent-1:0.239-1.fc38.noarch
perl-podlators-1:5.01-1.fc38.noarch
perl-vars-1.05-494.fc38.noarch
pixman-0.40.0-6.fc37.x86_64
pulseaudio-libs-16.1-2.fc38.x86_64
pyproject-rpm-macros-1.5.1-1.fc38.noarch
python-pip-wheel-22.3.1-1.fc38.noarch
python-qt5-rpm-macros-5.15.6-10.fc38.noarch
python-rpm-macros-3.11-7.fc38.noarch
python-setuptools-wheel-65.5.1-1.fc38.noarch
python3-3.11.1-3.fc38.x86_64
python3-dbus-1.3.2-2.fc38.x86_64
python3-devel-3.11.1-3.fc38.x86_64
python3-libs-3.11.1-3.fc38.x86_64
python3-mmtf-1.1.2-18.fc37.noarch
python3-msgpack-1.0.4-3.fc37.x86_64
python3-numpy-1:1.23.5-2.fc38.x86_64
python3-packaging-21.3-7.fc38.noarch
python3-pyparsing-3.0.9-2.fc37.noarch
python3-pyqt5-sip-12.11.0-2.fc37.x86_64
python3-qt5-5.15.6-10.fc38.x86_64
python3-qt5-base-5.15.6-10.fc38.x86_64
python3-qt5-devel-5.15.6-10.fc38.x86_64
python3-rpm-generators-14-1.fc38.noarch
python3-rpm-macros-3.11-7.fc38.noarch
python3-setuptools-65.5.1-1.fc38.noarch
python3-simplejson-3.18.1-1.fc38.x86_64
qt-settings-37.0-1.fc38.noarch
qt5-qtbase-5.15.8-2.fc38.x86_64
qt5-qtbase-common-5.15.8-2.fc38.noarch
qt5-qtbase-devel-5.15.8-2.fc38.x86_64
qt5-qtbase-gui-5.15.8-2.fc38.x86_64
qt5-qtconnectivity-5.15.8-1.fc38.x86_64
qt5-qtdeclarative-5.15.8-1.fc38.x86_64
qt5-qtlocation-5.15.8-1.fc38.x86_64
qt5-qtmultimedia-5.15.8-1.fc38.x86_64
qt5-qtsensors-5.15.8-1.fc38.x86_64
qt5-qtserialport-5.15.8-1.fc38.x86_64
qt5-qtsvg-5.15.8-1.fc38.x86_64
qt5-qttools-common-5.15.8-1.fc38.noarch
qt5-qttools-libs-designer-5.15.8-1.fc38.x86_64
qt5-qttools-libs-help-5.15.8-1.fc38.x86_64
qt5-qtwebchannel-5.15.8-1.fc38.x86_64
qt5-qtwebsockets-5.15.8-1.fc38.x86_64
qt5-qtx11extras-5.15.8-1.fc38.x86_64
qt5-qtxmlpatterns-5.15.8-1.fc38.x86_64
qt5-rpm-macros-5.15.8-1.fc38.noarch
rhash-1.4.3-1.fc38.x86_64
serd-0.30.12-2.fc37.x86_64
shared-mime-info-2.2-2.fc37.x86_64
snappy-1.1.9-5.fc37.x86_64
sord-0.16.10-1.fc37.x86_64
soundtouch-2.3.1-3.fc37.x86_64
sratom-0.6.10-2.fc37.x86_64
sysprof-capture-devel-3.46.0-1.fc38.x86_64
vim-filesystem-2:9.0.1221-1.fc38.noarch
vulkan-headers-1.3.231.1-1.fc38.noarch
vulkan-loader-1.3.231.1-2.fc38.x86_64
vulkan-loader-devel-1.3.231.1-2.fc38.x86_64
webrtc-audio-processing-0.3.1-9.fc37.x86_64
xcb-util-0.4.1-1.fc38.x86_64
xcb-util-image-0.4.1-1.fc38.x86_64
xcb-util-keysyms-0.4.1-1.fc38.x86_64
xcb-util-renderutil-0.3.10-1.fc38.x86_64
xcb-util-wm-0.4.2-1.fc38.x86_64
xkeyboard-config-2.36-3.fc38.noarch
xml-common-0.6.3-59.fc37.noarch
xorg-x11-proto-devel-2022.2-2.fc38.noarch
xz-devel-5.2.9-1.fc38.x86_64
zlib-devel-1.2.13-2.fc38.x86_64
Complete!
Finish: build setup for pymol-2.5.0-6.fc38.src.rpm
Start: rpmbuild pymol-2.5.0-6.fc38.src.rpm
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1674172800
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.sR1YZg
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf pymol-open-source-2.5.0
+ /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/pymol-open-source-2.5.0.tar.gz
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd pymol-open-source-2.5.0
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/pymol-setup.py.patch
+ /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f
+ /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/pymol-wmclass-main.patch
+ /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f
+ /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/pymol-wmclass-pmgapp.patch
+ /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f
+ /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/pymol-mmtf.patch
+ /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f
+ /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/pymol-2.5.0-bug186.patch
+ /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f
+ ln -sr modules/web modules/pymol_web
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.YPCA0m
+ umask 022
+ cd /builddir/build/BUILD
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer'
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer'
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules'
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes'
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd pymol-open-source-2.5.0
+ export 'CXXFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer'
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer'
++ /usr/bin/getconf _NPROCESSORS_ONLN
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer'
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes'
+ /usr/bin/python3 setup.py build '--executable=/usr/bin/python3 -sP' --use-msgpackc=c++11 --use-openmp=yes --jobs 2
running build
running build_py
creating build/lib.linux-x86_64-cpython-311
creating build/lib.linux-x86_64-cpython-311/pymol2
copying modules/pymol2/cmd2.py -> build/lib.linux-x86_64-cpython-311/pymol2
copying modules/pymol2/__init__.py -> build/lib.linux-x86_64-cpython-311/pymol2
creating build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/xwin.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/xray.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/wizarding.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/viewing.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/vfont.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/util.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/shortcut_manager.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/shortcut_dict.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/shortcut.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/setting.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/seqalign.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/selector.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/selecting.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/save_shortcut.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/rpc.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/querying.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/pymolhttpd.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/preset.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/povray.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/parsing.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/parser.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/mpeg_encode.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/moving.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/movie.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/morphing.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/monitoring.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/menu.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/locking.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/lazyio.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/keywords.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/keyboard.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/invocation.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/internal.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/importing.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/helping.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/headering.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/gui.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/fitting.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/feedingback.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/externing.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/exporting.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/experimenting.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/editor.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/editing.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/diagnosing.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/creating.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/controlling.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/constants_palette.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/constants.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/computing.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/completing.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/commanding.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/colorramping.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/colorprinting.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/cmd.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/checking.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/cgo.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/callback.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/api.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/_gui.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/__main__.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/__init__.py -> build/lib.linux-x86_64-cpython-311/pymol
creating build/lib.linux-x86_64-cpython-311/pymol/wizard
copying modules/pymol/wizard/toggle.py -> build/lib.linux-x86_64-cpython-311/pymol/wizard
copying modules/pymol/wizard/stereodemo.py -> build/lib.linux-x86_64-cpython-311/pymol/wizard
copying modules/pymol/wizard/security.py -> build/lib.linux-x86_64-cpython-311/pymol/wizard
copying modules/pymol/wizard/sculpting.py -> build/lib.linux-x86_64-cpython-311/pymol/wizard
copying modules/pymol/wizard/renaming.py -> build/lib.linux-x86_64-cpython-311/pymol/wizard
copying modules/pymol/wizard/pseudoatom.py -> build/lib.linux-x86_64-cpython-311/pymol/wizard
copying modules/pymol/wizard/pair_fit.py -> build/lib.linux-x86_64-cpython-311/pymol/wizard
copying modules/pymol/wizard/openvr.py -> build/lib.linux-x86_64-cpython-311/pymol/wizard
copying modules/pymol/wizard/nucmutagenesis.py -> build/lib.linux-x86_64-cpython-311/pymol/wizard
copying modules/pymol/wizard/mutagenesis.py -> build/lib.linux-x86_64-cpython-311/pymol/wizard
copying modules/pymol/wizard/message.py -> build/lib.linux-x86_64-cpython-311/pymol/wizard
copying modules/pymol/wizard/measurement.py -> build/lib.linux-x86_64-cpython-311/pymol/wizard
copying modules/pymol/wizard/label.py -> build/lib.linux-x86_64-cpython-311/pymol/wizard
copying modules/pymol/wizard/filter.py -> build/lib.linux-x86_64-cpython-311/pymol/wizard
copying modules/pymol/wizard/dragging.py -> build/lib.linux-x86_64-cpython-311/pymol/wizard
copying modules/pymol/wizard/distance.py -> build/lib.linux-x86_64-cpython-311/pymol/wizard
copying modules/pymol/wizard/density.py -> build/lib.linux-x86_64-cpython-311/pymol/wizard
copying modules/pymol/wizard/demo.py -> build/lib.linux-x86_64-cpython-311/pymol/wizard
copying modules/pymol/wizard/command.py -> build/lib.linux-x86_64-cpython-311/pymol/wizard
copying modules/pymol/wizard/cleanup.py -> build/lib.linux-x86_64-cpython-311/pymol/wizard
copying modules/pymol/wizard/charge.py -> build/lib.linux-x86_64-cpython-311/pymol/wizard
copying modules/pymol/wizard/box.py -> build/lib.linux-x86_64-cpython-311/pymol/wizard
copying modules/pymol/wizard/benchmark.py -> build/lib.linux-x86_64-cpython-311/pymol/wizard
copying modules/pymol/wizard/appearance.py -> build/lib.linux-x86_64-cpython-311/pymol/wizard
copying modules/pymol/wizard/annotation.py -> build/lib.linux-x86_64-cpython-311/pymol/wizard
copying modules/pymol/wizard/__init__.py -> build/lib.linux-x86_64-cpython-311/pymol/wizard
creating build/lib.linux-x86_64-cpython-311/pymol/stereochemistry
copying modules/pymol/stereochemistry/__init__.py -> build/lib.linux-x86_64-cpython-311/pymol/stereochemistry
creating build/lib.linux-x86_64-cpython-311/pymol/plugins
copying modules/pymol/plugins/repository.py -> build/lib.linux-x86_64-cpython-311/pymol/plugins
copying modules/pymol/plugins/managergui_qt.py -> build/lib.linux-x86_64-cpython-311/pymol/plugins
copying modules/pymol/plugins/managergui.py -> build/lib.linux-x86_64-cpython-311/pymol/plugins
copying modules/pymol/plugins/legacysupport.py -> build/lib.linux-x86_64-cpython-311/pymol/plugins
copying modules/pymol/plugins/installation.py -> build/lib.linux-x86_64-cpython-311/pymol/plugins
copying modules/pymol/plugins/__init__.py -> build/lib.linux-x86_64-cpython-311/pymol/plugins
creating build/lib.linux-x86_64-cpython-311/pymol/Qt
copying modules/pymol/Qt/utils.py -> build/lib.linux-x86_64-cpython-311/pymol/Qt
copying modules/pymol/Qt/__init__.py -> build/lib.linux-x86_64-cpython-311/pymol/Qt
creating build/lib.linux-x86_64-cpython-311/pmg_tk
copying modules/pmg_tk/PMGApp.py -> build/lib.linux-x86_64-cpython-311/pmg_tk
copying modules/pmg_tk/volume.py -> build/lib.linux-x86_64-cpython-311/pmg_tk
copying modules/pmg_tk/__init__.py -> build/lib.linux-x86_64-cpython-311/pmg_tk
copying modules/pmg_tk/TextEditor.py -> build/lib.linux-x86_64-cpython-311/pmg_tk
copying modules/pmg_tk/Setting.py -> build/lib.linux-x86_64-cpython-311/pmg_tk
copying modules/pmg_tk/SetEditor.py -> build/lib.linux-x86_64-cpython-311/pmg_tk
copying modules/pmg_tk/PyMOLMapLoad.py -> build/lib.linux-x86_64-cpython-311/pmg_tk
copying modules/pmg_tk/Demo.py -> build/lib.linux-x86_64-cpython-311/pmg_tk
copying modules/pmg_tk/ColorEditor.py -> build/lib.linux-x86_64-cpython-311/pmg_tk
creating build/lib.linux-x86_64-cpython-311/pmg_tk/startup
copying modules/pmg_tk/startup/__init__.py -> build/lib.linux-x86_64-cpython-311/pmg_tk/startup
creating build/lib.linux-x86_64-cpython-311/pmg_tk/skins
copying modules/pmg_tk/skins/__init__.py -> build/lib.linux-x86_64-cpython-311/pmg_tk/skins
creating build/lib.linux-x86_64-cpython-311/pmg_tk/skins/normal
copying modules/pmg_tk/skins/normal/builder.py -> build/lib.linux-x86_64-cpython-311/pmg_tk/skins/normal
copying modules/pmg_tk/skins/normal/__init__.py -> build/lib.linux-x86_64-cpython-311/pmg_tk/skins/normal
copying modules/pmg_tk/skins/normal/ModalWindow.py -> build/lib.linux-x86_64-cpython-311/pmg_tk/skins/normal
creating build/lib.linux-x86_64-cpython-311/pmg_tk/skins/demo
copying modules/pmg_tk/skins/demo/__init__.py -> build/lib.linux-x86_64-cpython-311/pmg_tk/skins/demo
creating build/lib.linux-x86_64-cpython-311/pmg_qt
copying modules/pmg_qt/volume.py -> build/lib.linux-x86_64-cpython-311/pmg_qt
copying modules/pmg_qt/shortcut_menu_gui.py -> build/lib.linux-x86_64-cpython-311/pmg_qt
copying modules/pmg_qt/pymol_qt_gui.py -> build/lib.linux-x86_64-cpython-311/pmg_qt
copying modules/pmg_qt/pymol_gl_widget.py -> build/lib.linux-x86_64-cpython-311/pmg_qt
copying modules/pmg_qt/properties_dialog.py -> build/lib.linux-x86_64-cpython-311/pmg_qt
copying modules/pmg_qt/mimic_tk.py -> build/lib.linux-x86_64-cpython-311/pmg_qt
copying modules/pmg_qt/mimic_pmg_tk.py -> build/lib.linux-x86_64-cpython-311/pmg_qt
copying modules/pmg_qt/keymapping.py -> build/lib.linux-x86_64-cpython-311/pmg_qt
copying modules/pmg_qt/file_dialogs.py -> build/lib.linux-x86_64-cpython-311/pmg_qt
copying modules/pmg_qt/builder.py -> build/lib.linux-x86_64-cpython-311/pmg_qt
copying modules/pmg_qt/advanced_settings_gui.py -> build/lib.linux-x86_64-cpython-311/pmg_qt
copying modules/pmg_qt/__init__.py -> build/lib.linux-x86_64-cpython-311/pmg_qt
copying modules/pmg_qt/TextEditor.py -> build/lib.linux-x86_64-cpython-311/pmg_qt
creating build/lib.linux-x86_64-cpython-311/pmg_qt/syntax
copying modules/pmg_qt/syntax/python.py -> build/lib.linux-x86_64-cpython-311/pmg_qt/syntax
copying modules/pmg_qt/syntax/pmlparser.py -> build/lib.linux-x86_64-cpython-311/pmg_qt/syntax
copying modules/pmg_qt/syntax/pml.py -> build/lib.linux-x86_64-cpython-311/pmg_qt/syntax
copying modules/pmg_qt/syntax/__init__.py -> build/lib.linux-x86_64-cpython-311/pmg_qt/syntax
creating build/lib.linux-x86_64-cpython-311/pmg_qt/forms
copying modules/pmg_qt/forms/__init__.py -> build/lib.linux-x86_64-cpython-311/pmg_qt/forms
creating build/lib.linux-x86_64-cpython-311/chempy
copying modules/chempy/xyz.py -> build/lib.linux-x86_64-cpython-311/chempy
copying modules/chempy/water_residues.py -> build/lib.linux-x86_64-cpython-311/chempy
copying modules/chempy/water_amber.py -> build/lib.linux-x86_64-cpython-311/chempy
copying modules/chempy/solvate.py -> build/lib.linux-x86_64-cpython-311/chempy
copying modules/chempy/sdf.py -> build/lib.linux-x86_64-cpython-311/chempy
copying modules/chempy/protein_residues.py -> build/lib.linux-x86_64-cpython-311/chempy
copying modules/chempy/protein_mmff.py -> build/lib.linux-x86_64-cpython-311/chempy
copying modules/chempy/protein_amber99.py -> build/lib.linux-x86_64-cpython-311/chempy
copying modules/chempy/protein_amber.py -> build/lib.linux-x86_64-cpython-311/chempy
copying modules/chempy/protein.py -> build/lib.linux-x86_64-cpython-311/chempy
copying modules/chempy/place.py -> build/lib.linux-x86_64-cpython-311/chempy
copying modules/chempy/pkl.py -> build/lib.linux-x86_64-cpython-311/chempy
copying modules/chempy/pdb.py -> build/lib.linux-x86_64-cpython-311/chempy
copying modules/chempy/neighbor.py -> build/lib.linux-x86_64-cpython-311/chempy
copying modules/chempy/mol2.py -> build/lib.linux-x86_64-cpython-311/chempy
copying modules/chempy/mol.py -> build/lib.linux-x86_64-cpython-311/chempy
copying modules/chempy/models.py -> build/lib.linux-x86_64-cpython-311/chempy
copying modules/chempy/mmd.py -> build/lib.linux-x86_64-cpython-311/chempy
copying modules/chempy/mass.py -> build/lib.linux-x86_64-cpython-311/chempy
copying modules/chempy/map.py -> build/lib.linux-x86_64-cpython-311/chempy
copying modules/chempy/mae.py -> build/lib.linux-x86_64-cpython-311/chempy
copying modules/chempy/lst.py -> build/lib.linux-x86_64-cpython-311/chempy
copying modules/chempy/io.py -> build/lib.linux-x86_64-cpython-311/chempy
copying modules/chempy/hetatm.py -> build/lib.linux-x86_64-cpython-311/chempy
copying modules/chempy/gms.py -> build/lib.linux-x86_64-cpython-311/chempy
copying modules/chempy/gamess1.py -> build/lib.linux-x86_64-cpython-311/chempy
copying modules/chempy/dictdb.py -> build/lib.linux-x86_64-cpython-311/chempy
copying modules/chempy/cpv.py -> build/lib.linux-x86_64-cpython-311/chempy
copying modules/chempy/cif.py -> build/lib.linux-x86_64-cpython-311/chempy
copying modules/chempy/charge.py -> build/lib.linux-x86_64-cpython-311/chempy
copying modules/chempy/cc1.py -> build/lib.linux-x86_64-cpython-311/chempy
copying modules/chempy/brick.py -> build/lib.linux-x86_64-cpython-311/chempy
copying modules/chempy/bonds.py -> build/lib.linux-x86_64-cpython-311/chempy
copying modules/chempy/bond_mmff.py -> build/lib.linux-x86_64-cpython-311/chempy
copying modules/chempy/bond_amber.py -> build/lib.linux-x86_64-cpython-311/chempy
copying modules/chempy/arc.py -> build/lib.linux-x86_64-cpython-311/chempy
copying modules/chempy/__init__.py -> build/lib.linux-x86_64-cpython-311/chempy
creating build/lib.linux-x86_64-cpython-311/chempy/tinker
copying modules/chempy/tinker/state.py -> build/lib.linux-x86_64-cpython-311/chempy/tinker
copying modules/chempy/tinker/realtime.py -> build/lib.linux-x86_64-cpython-311/chempy/tinker
copying modules/chempy/tinker/keyword.py -> build/lib.linux-x86_64-cpython-311/chempy/tinker
copying modules/chempy/tinker/amber.py -> build/lib.linux-x86_64-cpython-311/chempy/tinker
copying modules/chempy/tinker/__init__.py -> build/lib.linux-x86_64-cpython-311/chempy/tinker
creating build/lib.linux-x86_64-cpython-311/chempy/mmtf
copying modules/chempy/mmtf/io.py -> build/lib.linux-x86_64-cpython-311/chempy/mmtf
copying modules/chempy/mmtf/__init__.py -> build/lib.linux-x86_64-cpython-311/chempy/mmtf
creating build/lib.linux-x86_64-cpython-311/chempy/fragments
copying modules/chempy/fragments/__init__.py -> build/lib.linux-x86_64-cpython-311/chempy/fragments
creating build/lib.linux-x86_64-cpython-311/chempy/fast
copying modules/chempy/fast/__init__.py -> build/lib.linux-x86_64-cpython-311/chempy/fast
creating build/lib.linux-x86_64-cpython-311/chempy/champ
copying modules/chempy/champ/formal_charges.py -> build/lib.linux-x86_64-cpython-311/chempy/champ
copying modules/chempy/champ/assign.py -> build/lib.linux-x86_64-cpython-311/chempy/champ
copying modules/chempy/champ/amber99.py -> build/lib.linux-x86_64-cpython-311/chempy/champ
copying modules/chempy/champ/__init__.py -> build/lib.linux-x86_64-cpython-311/chempy/champ
creating build/lib.linux-x86_64-cpython-311/chempy/bmin
copying modules/chempy/bmin/util.py -> build/lib.linux-x86_64-cpython-311/chempy/bmin
copying modules/chempy/bmin/state.py -> build/lib.linux-x86_64-cpython-311/chempy/bmin
copying modules/chempy/bmin/realtime.py -> build/lib.linux-x86_64-cpython-311/chempy/bmin
copying modules/chempy/bmin/commands.py -> build/lib.linux-x86_64-cpython-311/chempy/bmin
copying modules/chempy/bmin/__init__.py -> build/lib.linux-x86_64-cpython-311/chempy/bmin
copying modules/pmg_qt/forms/shortcut_menu.ui -> build/lib.linux-x86_64-cpython-311/pmg_qt/forms
copying modules/pmg_qt/forms/save_object.ui -> build/lib.linux-x86_64-cpython-311/pmg_qt/forms
copying modules/pmg_qt/forms/save_molecule.ui -> build/lib.linux-x86_64-cpython-311/pmg_qt/forms
copying modules/pmg_qt/forms/render.ui -> build/lib.linux-x86_64-cpython-311/pmg_qt/forms
copying modules/pmg_qt/forms/props.ui -> build/lib.linux-x86_64-cpython-311/pmg_qt/forms
copying modules/pmg_qt/forms/png.ui -> build/lib.linux-x86_64-cpython-311/pmg_qt/forms
copying modules/pmg_qt/forms/pluginmanager.ui -> build/lib.linux-x86_64-cpython-311/pmg_qt/forms
copying modules/pmg_qt/forms/pluginitem.ui -> build/lib.linux-x86_64-cpython-311/pmg_qt/forms
copying modules/pmg_qt/forms/movieexport.ui -> build/lib.linux-x86_64-cpython-311/pmg_qt/forms
copying modules/pmg_qt/forms/load_traj.ui -> build/lib.linux-x86_64-cpython-311/pmg_qt/forms
copying modules/pmg_qt/forms/load_mtz.ui -> build/lib.linux-x86_64-cpython-311/pmg_qt/forms
copying modules/pmg_qt/forms/load_map.ui -> build/lib.linux-x86_64-cpython-311/pmg_qt/forms
copying modules/pmg_qt/forms/load_mae.ui -> build/lib.linux-x86_64-cpython-311/pmg_qt/forms
copying modules/pmg_qt/forms/load_aln.ui -> build/lib.linux-x86_64-cpython-311/pmg_qt/forms
copying modules/pmg_qt/forms/help_shortcut.ui -> build/lib.linux-x86_64-cpython-311/pmg_qt/forms
copying modules/pmg_qt/forms/fetch.ui -> build/lib.linux-x86_64-cpython-311/pmg_qt/forms
copying modules/pmg_qt/forms/create_shortcut.ui -> build/lib.linux-x86_64-cpython-311/pmg_qt/forms
copying modules/pmg_qt/forms/colors.ui -> build/lib.linux-x86_64-cpython-311/pmg_qt/forms
copying modules/pmg_qt/forms/change_confirm.ui -> build/lib.linux-x86_64-cpython-311/pmg_qt/forms
copying modules/pmg_qt/forms/askpartial.ui -> build/lib.linux-x86_64-cpython-311/pmg_qt/forms
running build_ext
building 'pymol._cmd' extension
creating build/temp.linux-x86_64-cpython-311
creating build/temp.linux-x86_64-cpython-311/build
creating build/temp.linux-x86_64-cpython-311/build/generated
creating build/temp.linux-x86_64-cpython-311/contrib
creating build/temp.linux-x86_64-cpython-311/contrib/mmtf-c
creating build/temp.linux-x86_64-cpython-311/contrib/uiuc
creating build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins
creating build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin
creating build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src
creating build/temp.linux-x86_64-cpython-311/layer0
creating build/temp.linux-x86_64-cpython-311/layer1
creating build/temp.linux-x86_64-cpython-311/layer2
creating build/temp.linux-x86_64-cpython-311/layer3
creating build/temp.linux-x86_64-cpython-311/layer4
creating build/temp.linux-x86_64-cpython-311/layer5
creating build/temp.linux-x86_64-cpython-311/ov
creating build/temp.linux-x86_64-cpython-311/ov/src
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD build/generated/ShaderText.cpp -o build/temp.linux-x86_64-cpython-311/build/generated/ShaderText.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/jsplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/mmtf-c/mmtf_parser.cpp -o build/temp.linux-x86_64-cpython-311/contrib/mmtf-c/mmtf_parser.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In file included from contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c:79:
contrib/uiuc/plugins/molfile_plugin/src/fastio.h: In function ‘fio_readv’:
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:519:14: warning: comparison of integer expressions of different signedness: ‘fio_size_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
519 | if (rc != iov[i].iov_len)
| ^~
In file included from contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c:89:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h: At top level:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: ‘swap8_unaligned’ defined but not used [-Wunused-function]
65 | static void swap8_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: ‘swap4_unaligned’ defined but not used [-Wunused-function]
46 | static void swap4_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘swap2_unaligned’ defined but not used [-Wunused-function]
32 | static void swap2_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:459:19: warning: ‘fio_readv’ defined but not used [-Wunused-function]
459 | static fio_size_t fio_readv(fio_fd fd, const fio_iovec * iov, int iovcnt) {
| ^~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/mmtf-c/mmtf_parser.cpp: In function ‘bool MMTF_unpack_from_file(const char*, MMTF_container*)’:
contrib/mmtf-c/mmtf_parser.cpp:1075:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
1075 | fread(buffer, fileLen, 1, file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp: In function ‘int {anonymous}::write_structure(void*, int, const molfile_atom_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp:1904:9: warning: unused variable ‘last_ctnumber’ [-Wunused-variable]
1904 | int last_ctnumber = -1;
| ^~~~~~~~~~~~~
contrib/mmtf-c/mmtf_parser.cpp: In function ‘MMTF_parser_fetch_typed_array(msgpack::v2::object const*, unsigned long*, int)’:
contrib/mmtf-c/mmtf_parser.cpp:869:5: warning: ‘typecheck’ may be used uninitialized [-Wmaybe-uninitialized]
869 | if (typecode != typecheck) {
| ^~
contrib/mmtf-c/mmtf_parser.cpp:864:9: note: ‘typecheck’ was declared here
864 | int typecheck;
| ^~~~~~~~~
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c: In function ‘PlugIOManagerInitAll’:
contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c:271:1: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
271 | if(ok) ok = ok && (molfile_xyzplugin_init() == VMDPLUGIN_SUCCESS);
| ^~
contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c:273:8: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
273 | if(ok) {
| ^~
contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c: In function ‘PlugIOManagerFreeAll’:
contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c:411:1: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
411 | if(ok) ok = ok && (molfile_xyzplugin_fini() == VMDPLUGIN_SUCCESS);
| ^~
contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c:413:8: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
413 | return ok;
| ^~~~~~
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function ‘abinit_readline’:
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:279:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
279 | for (i = 0; i < strlen(line); ++i) {
| ^
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function ‘DEN_read_volumetric_data’:
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:970:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
970 | fread(recordmarker, 1, data->hdr->bintype.recordmarker, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:971:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
971 | fread(recordmarker, 1, data->hdr->bintype.recordmarker, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function ‘POT_read_volumetric_data’:
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:1113:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
1113 | fread(recordmarker, 1, data->hdr->bintype.recordmarker, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:1114:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
1114 | fread(recordmarker, 1, data->hdr->bintype.recordmarker, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function ‘abinit_header’:
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:1511:3: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
1511 | fread(skip, 1, 8, fp);
| ^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function ‘GEO_read_next_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:619:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
619 | fscanf(data->file, "%*s %f %f %f", &x, &y, &z);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:70:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h: At top level:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: ‘get_pte_idx_from_string’ defined but not used [-Wunused-function]
160 | static int get_pte_idx_from_string(const char *label) {
| ^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp: In function ‘(anonymous namespace)::read_structure(void*, int*, molfile_atom_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp:1786:22: warning: ‘strncpy’ specified bound 16 equals destination size [-Wstringop-truncation]
1786 | strncpy( ct.particles[to].type, v->second.funct.c_str(),
| ^
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/avsplugin.cpp -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/avsplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp: In member function ‘(anonymous namespace)::SitesArray::insert_row(std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > const&)’:
contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp:784:16: warning: ‘strncpy’ specified bound 32 equals destination size [-Wstringop-truncation]
784 | strncpy(arr, value.substr(1,value.size()-2).c_str(), N);
| ^
contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp:786:16: warning: ‘strncpy’ specified bound 32 equals destination size [-Wstringop-truncation]
786 | strncpy(arr, value.c_str(), N);
| ^
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.c -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp: In member function ‘(anonymous namespace)::AtomArray::insert_row(std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > const&)’:
contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp:886:16: warning: ‘strncpy’ specified bound 16 equals destination size [-Wstringop-truncation]
886 | strncpy( a.name,
| ^
In file included from contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.c:42:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function ‘angular_momentum_expon’:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:545:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
545 | for (i=0; i<strlen(ang_mom_str); i++) {
| ^
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: At top level:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1097:13: warning: ‘whereami’ defined but not used [-Wunused-function]
1097 | static void whereami(FILE *file) {
| ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1077:13: warning: ‘thisline’ defined but not used [-Wunused-function]
1077 | static void thisline(FILE *file) {
| ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1028:12: warning: ‘fpexpftoc’ defined but not used [-Wunused-function]
1028 | static int fpexpftoc(char *ftocstr) {
| ^~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1006:12: warning: ‘have_keyline’ defined but not used [-Wunused-function]
1006 | static int have_keyline(FILE *file, const char *keystring1,
| ^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:962:12: warning: ‘goto_keyline’ defined but not used [-Wunused-function]
962 | static int goto_keyline(FILE *file, ...) {
| ^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:901:14: warning: ‘strtoupper’ defined but not used [-Wunused-function]
901 | static char *strtoupper(char *s) {
| ^~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:895:12: warning: ‘iswhiteline’ defined but not used [-Wunused-function]
895 | static int iswhiteline(char *s) {
| ^~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:846:13: warning: ‘eatwhitelines’ defined but not used [-Wunused-function]
846 | static void eatwhitelines(FILE *file) {
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:835:13: warning: ‘eatline’ defined but not used [-Wunused-function]
835 | static void eatline(FILE * fd, int n)
| ^~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:711:12: warning: ‘symmetry_expand’ defined but not used [-Wunused-function]
711 | static int symmetry_expand(qm_atom_t **atoms, int numunique, int natoms,
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:585:13: warning: ‘print_matrix4’ defined but not used [-Wunused-function]
585 | static void print_matrix4(const float mat[16]) {
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:540:13: warning: ‘angular_momentum_expon’ defined but not used [-Wunused-function]
540 | static void angular_momentum_expon(int *ang_mom_expon,
| ^~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:507:13: warning: ‘del_wavefunction’ defined but not used [-Wunused-function]
507 | static void del_wavefunction(qm_timestep_t *ts) {
| ^~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:490:13: warning: ‘replace_wavefunction’ defined but not used [-Wunused-function]
490 | static void replace_wavefunction(qm_timestep_t *ts, int n) {
| ^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:471:27: warning: ‘add_wavefunction’ defined but not used [-Wunused-function]
471 | static qm_wavefunction_t* add_wavefunction(qm_timestep_t *ts) {
| ^~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:437:18: warning: ‘init_qmdata’ defined but not used [-Wunused-function]
437 | static qmdata_t* init_qmdata() {
| ^~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function ‘int read_bgf_timestep(void*, int, molfile_timestep_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:243:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
243 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:252:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
252 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function ‘int read_bgf_bonds_aux(void*, int*, int**, int**, float**)’:
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:328:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
328 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:346:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
346 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:355:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
355 | fgets(nextline, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:419:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
419 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function ‘int read_bgf_structure(void*, int*, molfile_atom_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:194:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
194 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:203:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
203 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function ‘void* open_bgf_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:59:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
59 | fgets(line, LINESIZE, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function ‘read_bgf_timestep(void*, int, molfile_timestep_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:120:12: warning: ‘strncpy’ output may be truncated copying 10 bytes from a string of length 224 [-Wstringop-truncation]
120 | strncpy(numstr, record + 31, 10);
| ^
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:125:12: warning: ‘strncpy’ output may be truncated copying 10 bytes from a string of length 214 [-Wstringop-truncation]
125 | strncpy(numstr+10, record + 41, 10);
| ^
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:130:12: warning: ‘strncpy’ output may be truncated copying 10 bytes from a string of length 204 [-Wstringop-truncation]
130 | strncpy(numstr+20, record + 51, 10);
| ^
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function ‘read_bgf_structure(void*, int*, molfile_atom_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:144:10: warning: ‘strncpy’ output may be truncated copying 5 bytes from a string of length 242 [-Wstringop-truncation]
144 | strncpy(name, record + 13, 5);
| ^
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:149:10: warning: ‘strncpy’ output may be truncated copying 4 bytes from a string of length 236 [-Wstringop-truncation]
149 | strncpy(resname, record + 19, 4);
| ^
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:167:10: warning: ‘strncpy’ output may be truncated copying 5 bytes from a string of length 194 [-Wstringop-truncation]
167 | strncpy(type, record+61, 5);
| ^
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/binposplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c: In function ‘open_binpos_read’:
contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c:64:3: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
64 | fread(magicchar,sizeof(char),4,fd);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c:72:3: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
72 | fread(&igarb,sizeof(int),1,fd);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.cpp -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp: In function ‘int read_brix_data(void*, int, float*, float*)’:
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:247:14: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
247 | fread(brick, sizeof(char), 512, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp: In function ‘void* open_brix_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:79:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
79 | fscanf(fd, "%3s", keyWord);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:86:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
86 | fscanf(fd, " %s %d %d %d", keyWord, &org_x, &org_y, &org_z);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:93:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
93 | fscanf(fd, " %s %d %d %d", keyWord, &ext_x, &ext_y, &ext_z);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:100:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
100 | fscanf(fd, " %s %f %f %f", keyWord, &grid_x, &grid_y, &grid_z);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:109:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
109 | fscanf(fd, " %s %f %f %f %f %f %f", keyWord,
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
110 | &cell_x, &cell_y, &cell_z, &cell_alpha, &cell_beta, &cell_gamma);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:123:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
123 | fscanf(fd, " %s %f", keyWord, &prod);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:128:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
128 | fscanf(fd, " %s %f", keyWord, &plus);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:135:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
135 | fscanf(fd, " %s %f", keyWord, &sigma);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/carplugin.c -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/carplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function ‘read_car_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:326:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
326 | fgets(line, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:339:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
339 | fgets(line, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:344:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
344 | fgets(line, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:349:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
349 | fgets(line, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:363:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
363 | fgets(line, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:373:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
373 | fgets(line, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function ‘read_car_structure’:
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:266:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
266 | fgets(line, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:268:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
268 | fgets(line, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:272:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
272 | fgets(line, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:295:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
295 | fgets(line, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:305:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
305 | fgets(line, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function ‘open_car_read’:
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:169:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
169 | fgets(line, LINESIZE, fd);
| ^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:179:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
179 | fgets(line, LINESIZE, fd);
| ^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:182:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
182 | fgets(line, LINESIZE, fd);
| ^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:210:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
210 | fgets(line, LINESIZE, fd);
| ^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:213:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
213 | fgets(line, LINESIZE, fd);
| ^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:224:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
224 | fgets(line, LINESIZE, fd);
| ^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:226:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
226 | fgets(line, LINESIZE, fd);
| ^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:230:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
230 | fgets(line, LINESIZE, fd);
| ^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:234:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
234 | fgets(line, LINESIZE, fd);
| ^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:245:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
245 | fgets(line, LINESIZE, fd);
| ^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function ‘read_car_structure’:
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:127:29: warning: ‘%d’ directive writing between 1 and 11 bytes into a region of size 8 [-Wformat-overflow=]
127 | sprintf(atom->resname, "%d", resid);
| ^~
In function ‘read_car_structure_line’,
inlined from ‘read_car_structure’ at contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:277:12:
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:127:28: note: directive argument in the range [-2147483648, 9999999]
127 | sprintf(atom->resname, "%d", resid);
| ^~~~
In file included from /usr/include/stdio.h:906,
from contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:85:
In function ‘sprintf’,
inlined from ‘read_car_structure_line’ at contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:127:5,
inlined from ‘read_car_structure’ at contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:277:12:
/usr/include/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 2 and 12 bytes into a destination of size 8
30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
31 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
32 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp: In function ‘int read_ccp4_data(void*, int, float*, float*)’:
contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:495:58: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
495 | if ( fread(rowdata, sizeof(char), extent[0], fd) != extent[0] ) {
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:525:67: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
525 | if ( fread(rowdata, sizeof(unsigned char), extent[0], fd) != extent[0] ) {
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:556:58: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
556 | if (fread(rowdata, sizeof(float), extent[0], fd) != extent[0] ) {
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:588:58: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
588 | if (fread(rowdata, sizeof(short), extent[0], fd) != extent[0] ) {
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:623:67: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
623 | if (fread(rowdata, sizeof(unsigned short), extent[0], fd) != extent[0] ) {
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:655:60: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
655 | if ( fread(rowdata, sizeof(uchar3), extent[0], fd) != extent[0] ) {
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp: In function ‘void* open_ccp4_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:304:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
304 | fgets(symData, 81, fd);
| ~~~~~^~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:42:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h: At global scope:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: ‘void swap8_aligned(void*, long int)’ defined but not used [-Wunused-function]
124 | static void swap8_aligned(void *v, long ndata) {
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: ‘void swap8_unaligned(void*, long int)’ defined but not used [-Wunused-function]
65 | static void swap8_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: ‘void swap4_unaligned(void*, long int)’ defined but not used [-Wunused-function]
46 | static void swap4_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘void swap2_unaligned(void*, long int)’ defined but not used [-Wunused-function]
32 | static void swap2_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp: In function ‘open_ccp4_read(char const*, char const*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:279:3: warning: ‘dataOffset’ may be used uninitialized [-Wmaybe-uninitialized]
279 | if (dataOffset != (CCP4HDSIZE + symBytes)) {
| ^~
contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:89:8: note: ‘dataOffset’ was declared here
89 | long dataOffset, filesize;
| ^~~~~~~~~~
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/corplugin.c -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/corplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/crdplugin.c -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/crdplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp: In function ‘void* open_cube_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:175:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
175 | fgets(readbuf, 1023, cube->fd); // go on to next line
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:181:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
181 | fgets(readbuf, 1023, cube->fd); // skip second header line
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:326:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
326 | fgets(readbuf, 1023, cube->fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:337:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
337 | fgets(readbuf, 1023, cube->fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:339:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
339 | fscanf(cube->fd, "%d", &cube->nsets);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:344:13: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
344 | fscanf(cube->fd, "%d", &orb);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:349:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
349 | fgets(readbuf, 1023, cube->fd); // gobble up rest of line
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp: At global scope:
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:107:13: warning: ‘void cube_buildrotmat(cube_t*, float*, float*, float*)’ defined but not used [-Wunused-function]
107 | static void cube_buildrotmat(cube_t *cube, float *o, float *a, float *b)
| ^~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:42:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: ‘int get_pte_idx_from_string(const char*)’ defined but not used [-Wunused-function]
160 | static int get_pte_idx_from_string(const char *label) {
| ^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:133:12: warning: ‘int get_pte_idx(const char*)’ defined but not used [-Wunused-function]
133 | static int get_pte_idx(const char *label)
| ^~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/mapplugin.cpp -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/mapplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp: In function ‘open_cube_read(char const*, char const*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:179:10: warning: ‘__strncat_chk’ output may be truncated copying 240 bytes from a string of length 1023 [-Wstringop-truncation]
179 | strncat(voltmpl.dataname, readbuf, 240); // 240 is max space left after
| ^
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In file included from contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:51:
contrib/uiuc/plugins/molfile_plugin/src/fastio.h: In function ‘fio_readv’:
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:519:14: warning: comparison of integer expressions of different signedness: ‘fio_size_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
519 | if (rc != iov[i].iov_len)
| ^~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp: In function ‘int read_mdf_bonds(void*, int*, int**, int**, float**, int**, int*, char***)’:
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:278:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
278 | fgets(line, LINESIZE, mdf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:297:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
297 | fgets(line, LINESIZE, mdf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:319:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
319 | fgets(line, LINESIZE, mdf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:357:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
357 | fgets(line, LINESIZE, mdf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp: In function ‘int read_mdf_structure(void*, int*, molfile_atom_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:223:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
223 | fgets(line, LINESIZE, mdf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:241:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
241 | fgets(line, LINESIZE, mdf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp: In function ‘void* open_mdf_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:164:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
164 | fgets(line, LINESIZE, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:176:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
176 | fgets(line, LINESIZE, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:183:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
183 | fgets(line, LINESIZE, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c: In function ‘read_dcdheader’:
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:191:57: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
191 | } else if (input_integer[0] == 84 && input_integer[1] == dcdcordmagic) {
| ^~
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:204:54: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
204 | if (input_integer[0] == 84 && input_integer[1] == dcdcordmagic) {
| ^~
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:222:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
222 | if (input_integer[0] != dcdcordmagic) {
| ^~
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:399:45: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
399 | if ((input_integer[0]+input_integer[1]) != ((*N)-(*NAMNF))*4) {
| ^~
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:416:45: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
416 | if ((input_integer[0]+input_integer[1]) != ((*N)-(*NAMNF))*4) {
| ^~
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c: In function ‘read_dcdstep’:
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:621:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
621 | if (tmpbuf[i] != sizeof(float)*N) return DCD_BADFORMAT;
| ^~
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:625:43: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
625 | if ((tmpbuf[2*i]+tmpbuf[2*i+1]) != sizeof(float)*N) return DCD_BADFORMAT;
| ^~
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:546:16: warning: variable ‘readlen’ set but not used [-Wunused-but-set-variable]
546 | fio_size_t readlen; /* number of bytes actually read */
| ^~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:60:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h: At top level:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: ‘swap2_aligned’ defined but not used [-Wunused-function]
96 | static void swap2_aligned(void *v, long ndata) {
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘swap2_unaligned’ defined but not used [-Wunused-function]
32 | static void swap2_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:609:12: warning: ‘fio_write_str’ defined but not used [-Wunused-function]
609 | static int fio_write_str(fio_fd fd, const char *str) {
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:605:12: warning: ‘fio_read_int32’ defined but not used [-Wunused-function]
605 | static int fio_read_int32(fio_fd fd, int *i) {
| ^~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:459:19: warning: ‘fio_readv’ defined but not used [-Wunused-function]
459 | static fio_size_t fio_readv(fio_fd fd, const fio_iovec * iov, int iovcnt) {
| ^~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function ‘int read_mol2_timestep(void*, int, molfile_timestep_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:275:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
275 | fgets(line, LINESIZE, mol2->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:289:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
289 | fgets(line, LINESIZE, mol2->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function ‘int read_mol2_bonds_aux(void*, int*, int**, int**, float**)’:
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:199:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
199 | fgets(line, LINESIZE, mol2->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:209:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
209 | fgets(line, LINESIZE, mol2->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function ‘int read_mol2(void*, int*, molfile_atom_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:127:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
127 | fgets(line, LINESIZE, mol2->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:138:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
138 | fgets(line, LINESIZE, mol2->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function ‘void* open_mol2_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:74:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
74 | fgets(line, LINESIZE, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:81:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
81 | fgets(line, LINESIZE, fd); // Read and ignore the mol_name
| ~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:82:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
82 | fgets(line, LINESIZE, fd); // Read the molecule info
| ~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:91:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
91 | fgets(line, LINESIZE, fd); // Read and ignore the mol_type
| ~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:92:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
92 | fgets(line, LINESIZE, fd); // Read the charge_type
| ~~~~~^~~~~~~~~~~~~~~~~~~~
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In file included from contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:49:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function ‘angular_momentum_expon’:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:545:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
545 | for (i=0; i<strlen(ang_mom_str); i++) {
| ^
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c: In function ‘read_molden_rundata’:
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:596:25: warning: variable ‘hessian_data’ set but not used [-Wunused-but-set-variable]
596 | molfile_qm_hessian_t *hessian_data;
| ^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c: In function ‘count_orbitals’:
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:1165:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
1165 | fscanf(data->file, " Ene= %f\n", &orbenergy);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:1166:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
1166 | fscanf(data->file, " Spin= %s\n", spin);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:1167:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
1167 | fscanf(data->file, " Occup= %f\n", &occu);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function ‘eatline’:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:840:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
840 | fgets(readbuf, 1024, fd);
| ^~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c: In function ‘open_molden_read’:
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:224:11: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
224 | fscanf(data->file, "%d", &natm);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: At top level:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1097:13: warning: ‘whereami’ defined but not used [-Wunused-function]
1097 | static void whereami(FILE *file) {
| ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1077:13: warning: ‘thisline’ defined but not used [-Wunused-function]
1077 | static void thisline(FILE *file) {
| ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1006:12: warning: ‘have_keyline’ defined but not used [-Wunused-function]
1006 | static int have_keyline(FILE *file, const char *keystring1,
| ^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:711:12: warning: ‘symmetry_expand’ defined but not used [-Wunused-function]
711 | static int symmetry_expand(qm_atom_t **atoms, int numunique, int natoms,
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:585:13: warning: ‘print_matrix4’ defined but not used [-Wunused-function]
585 | static void print_matrix4(const float mat[16]) {
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:507:13: warning: ‘del_wavefunction’ defined but not used [-Wunused-function]
507 | static void del_wavefunction(qm_timestep_t *ts) {
| ^~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:490:13: warning: ‘replace_wavefunction’ defined but not used [-Wunused-function]
490 | static void replace_wavefunction(qm_timestep_t *ts, int n) {
| ^~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:48:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:133:12: warning: ‘get_pte_idx’ defined but not used [-Wunused-function]
133 | static int get_pte_idx(const char *label)
| ^~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:109:14: warning: ‘get_pte_vdw_radius’ defined but not used [-Wunused-function]
109 | static float get_pte_vdw_radius(const int idx)
| ^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:102:14: warning: ‘get_pte_mass’ defined but not used [-Wunused-function]
102 | static float get_pte_mass(const int idx)
| ^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:95:20: warning: ‘get_pte_label’ defined but not used [-Wunused-function]
95 | static const char *get_pte_label(const int idx)
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c: In function ‘read_dlpoly_config_structure’:
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:292:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
292 | if (NULL == fgets(fbuffer, 1024, data->file))
| ^~
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:295:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
295 | if (NULL == fgets(fbuffer, 1024, data->file))
| ^~
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c: In function ‘read_dlpoly_config_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:669:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
669 | fgets(fbuffer, 1024, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c: In function ‘read_dlpoly_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:554:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
554 | fgets(fbuffer, 1024, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c: In function ‘read_dlpoly_config_structure’:
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:362:5: warning: ‘strncpy’ output may be truncated copying 16 bytes from a string of length 4095 [-Wstringop-truncation]
362 | strncpy(atom->name, buf, sizeof(atom->name));
| ^
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c: In function ‘read_dlpoly_structure’:
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:267:5: warning: ‘strncpy’ output may be truncated copying 16 bytes from a string of length 4095 [-Wstringop-truncation]
267 | strncpy(atom->name, buf, sizeof(atom->name));
| ^
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp: In function ‘int read_dsn6_data(void*, int, float*, float*)’:
contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp:233:14: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
233 | fread(brick, sizeof(char), 512, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp: In function ‘void* open_dsn6_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp:91:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
91 | fread(fileHeader, sizeof(short), 19, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp:63:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h: At global scope:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: ‘void swap8_aligned(void*, long int)’ defined but not used [-Wunused-function]
124 | static void swap8_aligned(void *v, long ndata) {
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:110:13: warning: ‘void swap4_aligned(void*, long int)’ defined but not used [-Wunused-function]
110 | static void swap4_aligned(void *v, long ndata) {
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: ‘void swap8_unaligned(void*, long int)’ defined but not used [-Wunused-function]
65 | static void swap8_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: ‘void swap4_unaligned(void*, long int)’ defined but not used [-Wunused-function]
46 | static void swap4_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c: In function ‘read_molden_structure’:
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:350:7: warning: ‘strncpy’ output may be truncated copying 16 bytes from a string of length 1023 [-Wstringop-truncation]
350 | strncpy(atom->type, atname, sizeof(atom->type));
| ^
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:351:7: warning: ‘strncpy’ output may be truncated copying 16 bytes from a string of length 1023 [-Wstringop-truncation]
351 | strncpy(atom->name, atname, sizeof(atom->name));
| ^
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:317:7: warning: ‘strncpy’ output may be truncated copying 16 bytes from a string of length 1023 [-Wstringop-truncation]
317 | strncpy(atom->name, atname, sizeof(atom->name));
| ^
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:326:7: warning: ‘strncpy’ output may be truncated copying 11 bytes from a string of length 1023 [-Wstringop-truncation]
326 | strncpy(data->atoms[i].type, atname, sizeof(data->atoms[i].type));
| ^
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp: In function ‘int read_rawgraphics(void*, int*, const molfile_graphics_t**)’:
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:91:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
91 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:116:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
116 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:132:9: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
132 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:149:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
149 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:155:20: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
155 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:161:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
161 | fgets(line, 80, infile); //one more read to keep us in sync
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:170:27: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
170 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:217:15: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
217 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:237:23: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
237 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:256:15: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
256 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.cpp -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c: In function ‘read_next_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c:103:10: warning: variable ‘numatoms’ set but not used [-Wunused-but-set-variable]
103 | int i, numatoms;
| ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c: In function ‘write_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c:206:55: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
206 | if (fwrite(tmp, sizeof(double), 3*n, namdbin->fd) != 3*n) {
| ^~
contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c: In function ‘open_namdbin_read’:
contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c:78:3: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
78 | fread(&filen, sizeof(namdbin_int32), 1, fd);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c: In function ‘read_mmtk_cdf_structure’:
contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c:730:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
730 | if (len > sizeof(name)) {
| ^
contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c: In function ‘read_mmtk_cdf_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c:1060:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
1060 | for (i=0; i<(3 * mmtk->atom_numberdim); i++) {
| ^
In file included from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:71:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: ‘void swap8_aligned(void*, long int)’ defined but not used [-Wunused-function]
124 | static void swap8_aligned(void *v, long ndata) {
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:110:13: warning: ‘void swap4_aligned(void*, long int)’ defined but not used [-Wunused-function]
110 | static void swap4_aligned(void *v, long ndata) {
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: ‘void swap2_aligned(void*, long int)’ defined but not used [-Wunused-function]
96 | static void swap2_aligned(void *v, long ndata) {
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘void swap2_unaligned(void*, long int)’ defined but not used [-Wunused-function]
32 | static void swap2_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:70:
contrib/uiuc/plugins/molfile_plugin/src/vmddir.h:145:12: warning: ‘int vmd_file_is_executable(const char*)’ defined but not used [-Wunused-function]
145 | static int vmd_file_is_executable(const char * filename) {
| ^~~~~~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/offplugin.cpp -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/offplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp: In function ‘int read_parm7_structure(void*, int*, molfile_atom_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp:78:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
78 | fgets(buf, 85, file);
| ~~~~~^~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp:25:
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function ‘int parse_parm7_atoms(const char*, int, molfile_atom_t*, FILE*)’:
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:204:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
204 | fgets(buf, 85, file);
| ~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function ‘int parse_parm7_atype(const char*, int, molfile_atom_t*, FILE*)’:
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:257:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
257 | fgets(buf, 85, file);
| ~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function ‘int parse_parm7_resnames(const char*, int, char*, FILE*)’:
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:275:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
275 | fgets(buf, 85, file);
| ~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function ‘int parse_parm7_respointers(const char*, int, molfile_atom_t*, int, const char*, FILE*)’:
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:289:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
289 | fscanf(file, " %d", &cur);
| ~~~~~~^~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function ‘parmstruct* read_parm7_header(FILE*)’:
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:368:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
368 | fgets(sdum, 512, file);
| ~~~~~^~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:371:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
371 | fscanf(file, "%s\n", sdum); // "%FLAG"
| ~~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:378:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
378 | fscanf(file, "%s\n", sdum); // "TITLE" or "CTITLE"
| ~~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:385:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
385 | fscanf(file, "%s\n", sdum); // "FORMAT (20a4)"
| ~~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:399:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
399 | fgets(prm->title, sizeof(prm->title), file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:427:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
427 | fgets(sdum, sizeof(sdum), file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:439:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
439 | fscanf(file,parm7,
| ~~~~~~^~~~~~~~~~~~
440 | &prm->Natom, &prm->Ntypes, &prm->Nbonh, &prm->Nbona,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
441 | &prm->Ntheth, &prm->Ntheta, &prm->Nphih, &prm->Nphia,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
442 | &prm->Jparm, &prm->Nparm);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:443:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
443 | fscanf(file, parm7,
| ~~~~~~^~~~~~~~~~~~~
444 | &prm->Nnb, &prm->Nres, &prm->Mbona, &prm->Mtheta,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
445 | &prm->Mphia, &prm->Numbnd, &prm->Numang, &prm->Mptra,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
446 | &prm->Natyp, &prm->Nphb);
| ~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:447:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
447 | fscanf(file, parm7, &prm->Ifpert, &prm->Nbper, &prm->Ngper,
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
448 | &prm->Ndper, &prm->Mbper, &prm->Mgper, &prm->Mdper,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
449 | &prm->IfBox, &prm->Nmxrs, &prm->IfCap);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:451:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
451 | fscanf(file,"%8d",&prm->Numextra); //BB
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function ‘int read_parm7_flag(FILE*, const char*, const char*)’:
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:79:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
79 | fscanf(file, "%s\n", buf);
| ~~~~~~^~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:87:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
87 | fscanf(file, "%s\n", buf);
| ~~~~~~^~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:97:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
97 | fscanf(file, "%s\n", buf);
| ~~~~~~^~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function ‘read_parm7_structure(void*, int*, molfile_atom_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:277:12: warning: ‘__strncpy_chk’ output may be truncated copying 4 bytes from a string of length 84 [-Wstringop-truncation]
277 | strncpy(resnames, buf+4*j, 4);
| ^
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:259:12: warning: ‘strncpy’ output may be truncated copying 4 bytes from a string of length 84 [-Wstringop-truncation]
259 | strncpy(atom->type, buf+4*j, 4);
| ^
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:206:12: warning: ‘strncpy’ output may be truncated copying 4 bytes from a string of length 84 [-Wstringop-truncation]
206 | strncpy(atom->name, buf+4*j, 4);
| ^
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/parmplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In file included from contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp:24:
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h: In member function ‘int {anonymous}::ReadPARM::readparm(FILE*)’:
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:435:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
435 | fscanf(file, " " DBLFMT, &prm->Charges[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:444:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
444 | fscanf(file, " " DBLFMT, &prm->Masses[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:510:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
510 | fscanf(file, " " DBLFMT, &prm->Rk[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:517:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
517 | fscanf(file, " " DBLFMT, &prm->Req[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:524:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
524 | fscanf(file, " " DBLFMT, &prm->Tk[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:531:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
531 | fscanf(file, " " DBLFMT, &prm->Teq[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:538:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
538 | fscanf(file, " " DBLFMT, &prm->Pk[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:545:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
545 | fscanf(file, " " DBLFMT, &prm->Pn[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:552:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
552 | fscanf(file, " " DBLFMT, &prm->Phase[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:559:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
559 | fscanf(file, " " DBLFMT, &prm->Solty[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:567:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
567 | fscanf(file, " " DBLFMT, &prm->Cn1[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:575:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
575 | fscanf(file, " " DBLFMT, &prm->Cn2[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:756:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
756 | fscanf(file, " " DBLFMT, &prm->HB12[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:763:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
763 | fscanf(file, " " DBLFMT, &prm->HB6[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:771:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
771 | fscanf(file, " " DBLFMT, &H[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:853:23: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
853 | fscanf(file, " " DBLFMT " " DBLFMT " " DBLFMT,
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
854 | &prm->Box[0], &prm->Box[1], &prm->Box[2]);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:867:23: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
867 | fscanf(file, " %d " DBLFMT " " DBLFMT " " DBLFMT " " DBLFMT,
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
868 | &prm->Natcap, &prm->Cutcap,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~
869 | &prm->Xcap, &prm->Ycap, &prm->Zcap);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.cpp -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In file included from contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.cpp:53:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: ‘void swap2_aligned(void*, long int)’ defined but not used [-Wunused-function]
96 | static void swap2_aligned(void *v, long ndata) {
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: ‘void swap8_unaligned(void*, long int)’ defined but not used [-Wunused-function]
65 | static void swap8_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: ‘void swap4_unaligned(void*, long int)’ defined but not used [-Wunused-function]
46 | static void swap4_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘void swap2_unaligned(void*, long int)’ defined but not used [-Wunused-function]
32 | static void swap2_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In file included from contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:32:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:133:12: warning: ‘get_pte_idx’ defined but not used [-Wunused-function]
133 | static int get_pte_idx(const char *label)
| ^~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:31:
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h: In function ‘read_next_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:119:3: warning: ‘strncpy’ output may be truncated copying 80 bytes from a string of length 82 [-Wstringop-truncation]
119 | strncpy(tmp, record, PDB_RECORD_LENGTH);
| ^
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:144:5: warning: ‘strncpy’ output may be truncated copying 8 bytes from a string of length 52 [-Wstringop-truncation]
144 | strncpy(numstr, record + 30, 8);
| ^
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:149:5: warning: ‘strncpy’ output may be truncated copying 8 bytes from a string of length 44 [-Wstringop-truncation]
149 | strncpy(numstr+10, record + 38, 8);
| ^
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:154:5: warning: ‘strncpy’ output may be truncated copying 8 bytes from a string of length 36 [-Wstringop-truncation]
154 | strncpy(numstr+20, record + 46, 8);
| ^
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:159:5: warning: ‘strncpy’ output may be truncated copying 6 bytes from a string of length 28 [-Wstringop-truncation]
159 | strncpy(numstr+30, record + 54, 6);
| ^
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:164:5: warning: ‘strncpy’ output may be truncated copying 6 bytes from a string of length 22 [-Wstringop-truncation]
164 | strncpy(numstr+40, record + 60, 6);
| ^
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h: In function ‘open_pdb_read’:
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:190:5: warning: ‘strncpy’ output may be truncated copying 9 bytes from a string of length 32 [-Wstringop-truncation]
190 | strncpy(date, record + 50, 9);
| ^
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:200:5: warning: ‘strncpy’ output may be truncated copying 4 bytes from a string of length 20 [-Wstringop-truncation]
200 | strncpy(pdbcode, record + 62, 4);
| ^
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h: In function ‘read_pdb_structure’:
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:299:3: warning: ‘strncpy’ output may be truncated copying 4 bytes from a string of length 70 [-Wstringop-truncation]
299 | strncpy(name, record + 12, 4);
| ^
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:304:3: warning: ‘strncpy’ output may be truncated copying 1 byte from a string of length 66 [-Wstringop-truncation]
304 | strncpy(altloc, record + 16, 1);
| ^
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:308:3: warning: ‘strncpy’ output may be truncated copying 4 bytes from a string of length 65 [-Wstringop-truncation]
308 | strncpy(resname, record + 17, 4);
| ^
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:317:3: warning: ‘strncpy’ output may be truncated copying 4 bytes from a string of length 60 [-Wstringop-truncation]
317 | strncpy(resid, record + 22, 4);
| ^
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:159:5: warning: ‘strncpy’ output may be truncated copying 6 bytes from a string of length 28 [-Wstringop-truncation]
159 | strncpy(numstr+30, record + 54, 6);
| ^
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:164:5: warning: ‘strncpy’ output may be truncated copying 6 bytes from a string of length 22 [-Wstringop-truncation]
164 | strncpy(numstr+40, record + 60, 6);
| ^
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:330:5: warning: ‘strncpy’ output may be truncated copying 4 bytes from a string of length 10 [-Wstringop-truncation]
330 | strncpy(segname, record + 72, 4);
| ^
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:339:5: warning: ‘strncpy’ output may be truncated copying 2 bytes from a string of length 6 [-Wstringop-truncation]
339 | strncpy(elementsymbol, record + 76, 2);
| ^
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function ‘int getUniqueResID(char*, int)’:
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:443:7: warning: unused variable ‘i’ [-Wunused-variable]
443 | int i, uid;
| ^
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function ‘int parseStructureFaster(molfile_atom_t*, int*, pdbxParser*)’:
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:484:47: warning: unused variable ‘j’ [-Wunused-variable]
484 | int i, count, atomdata, pos, idx, xyzcount, j;
| ^
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:503:8: warning: unused variable ‘oldChain’ [-Wunused-variable]
503 | char oldChain[8];
| ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function ‘bool readAngleBonds(molfile_atom_t*, pdbxParser*)’:
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:803:7: warning: unused variable ‘bondTable’ [-Wunused-variable]
803 | int bondTable[32];
| ^~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:807:15: warning: unused variable ‘j’ [-Wunused-variable]
807 | int i, pos, j, k;
| ^
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:811:8: warning: unused variable ‘modelNum’ [-Wunused-variable]
811 | char modelNum[8];
| ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:822:20: warning: unused variable ‘atom’ [-Wunused-variable]
822 | molfile_atom_t * atom;
| ^~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:884:7: warning: unused variable ‘test’ [-Wunused-variable]
884 | int test = parser->nbonds + bnum;
| ^~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function ‘bool readRMSDBonds(molfile_atom_t*, pdbxParser*)’:
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:984:7: warning: unused variable ‘bondTable’ [-Wunused-variable]
984 | int bondTable[32];
| ^~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:988:15: warning: unused variable ‘j’ [-Wunused-variable]
988 | int i, pos, j, k;
| ^
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:991:8: warning: unused variable ‘modelNum’ [-Wunused-variable]
991 | char modelNum[8];
| ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:1002:20: warning: unused variable ‘atom’ [-Wunused-variable]
1002 | molfile_atom_t * atom;
| ^~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function ‘void* open_file_write(const char*, const char*, int)’:
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:1409:9: warning: unused variable ‘fd’ [-Wunused-variable]
1409 | FILE* fd;
| ^~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: At global scope:
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:313:14: warning: ‘float stringToFloat(char*)’ defined but not used [-Wunused-function]
313 | static float stringToFloat(char * str) {
| ^~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:25:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:133:12: warning: ‘int get_pte_idx(const char*)’ defined but not used [-Wunused-function]
133 | static int get_pte_idx(const char *label)
| ^~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:95:20: warning: ‘const char* get_pte_label(int)’ defined but not used [-Wunused-function]
95 | static const char *get_pte_label(const int idx)
| ^~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/phiplugin.cpp -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/phiplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/phiplugin.cpp: In function ‘read_phi_data(void*, int, float*, float*)’:
contrib/uiuc/plugins/molfile_plugin/src/phiplugin.cpp:216:14: warning: ‘strncpy’ output may be truncated copying 4 bytes from a string of length 84 [-Wstringop-truncation]
216 | strncpy(currNum, currChar, 4);
| ^
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/pltplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function ‘DDmkdir(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned int, int, int)’:
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:714:23: warning: ‘%03x’ directive writing between 3 and 8 bytes into a region of size 6 [-Wformat-overflow=]
714 | sprintf(sub, "%03x/", i);
| ^~~~
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:714:22: note: directive argument in the range [0, 2147483646]
714 | sprintf(sub, "%03x/", i);
| ^~~~~~~
In file included from /usr/include/stdio.h:906,
from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.hxx:56,
from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:47:
In function ‘sprintf’,
inlined from ‘DDmkdir(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned int, int, int)’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:714:9:
/usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 5 and 10 bytes into a destination of size 6
30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
31 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
32 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function ‘DDmkdir(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned int, int, int)’:
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:722:30: warning: ‘%03x’ directive writing between 3 and 8 bytes into a region of size 6 [-Wformat-overflow=]
722 | sprintf(subsub, "%03x", j);
| ^~~~
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:722:29: note: directive argument in the range [0, 2147483646]
722 | sprintf(subsub, "%03x", j);
| ^~~~~~
In function ‘sprintf’,
inlined from ‘DDmkdir(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned int, int, int)’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:722:13:
/usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 4 and 9 bytes into a destination of size 6
30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
31 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
32 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp: In function ‘int read_plt_data(void*, int, float*, float*)’:
contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp:143:51: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
143 | if ( fread(datablock, sizeof(float), ndata, fd) != ndata ) {
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp: In function ‘void* open_plt_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp:69:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
69 | fread(intHeader, sizeof(int), 5, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp:82:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
82 | fread(floatHeader, sizeof(float), 6, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp:42:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h: At global scope:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: ‘void swap8_aligned(void*, long int)’ defined but not used [-Wunused-function]
124 | static void swap8_aligned(void *v, long ndata) {
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: ‘void swap2_aligned(void*, long int)’ defined but not used [-Wunused-function]
96 | static void swap2_aligned(void *v, long ndata) {
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: ‘void swap8_unaligned(void*, long int)’ defined but not used [-Wunused-function]
65 | static void swap8_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: ‘void swap4_unaligned(void*, long int)’ defined but not used [-Wunused-function]
46 | static void swap4_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘void swap2_unaligned(void*, long int)’ defined but not used [-Wunused-function]
32 | static void swap2_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/plyplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In file included from contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp:30:
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function ‘void put_element_ply(PlyFile*, void*)’:
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:459:7: warning: unused variable ‘i’ [-Wunused-variable]
459 | int i,j,k;
| ^
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function ‘void ascii_get_element(PlyFile*, char*)’:
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1407:7: warning: unused variable ‘i’ [-Wunused-variable]
1407 | int i,j,k;
| ^
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function ‘void binary_get_element(PlyFile*, char*)’:
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1541:7: warning: unused variable ‘i’ [-Wunused-variable]
1541 | int i,j,k;
| ^
contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp: In function ‘int read_rawgraphics(void*, int*, const molfile_graphics_t**)’:
contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp:107:17: warning: variable ‘vert_other’ set but not used [-Wunused-but-set-variable]
107 | PlyOtherProp *vert_other=NULL;
| ^~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp:108:17: warning: variable ‘face_other’ set but not used [-Wunused-but-set-variable]
108 | PlyOtherProp *face_other=NULL;
| ^~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function ‘void binary_get_element(PlyFile*, char*)’:
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1629:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
1629 | fread (&len, sizeof(int), 1, fp);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1631:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
1631 | fread (str, len, 1, fp);
| ~~~~~~^~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function ‘void get_binary_item(FILE*, int, int*, unsigned int*, double*)’:
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2057:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
2057 | fread (ptr, 1, 1, fp);
| ~~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2063:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
2063 | fread (ptr, 1, 1, fp);
| ~~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2069:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
2069 | fread (ptr, 2, 1, fp);
| ~~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2075:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
2075 | fread (ptr, 2, 1, fp);
| ~~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2081:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
2081 | fread (ptr, 4, 1, fp);
| ~~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2087:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
2087 | fread (ptr, 4, 1, fp);
| ~~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2093:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
2093 | fread (ptr, 4, 1, fp);
| ~~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2099:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
2099 | fread (ptr, 8, 1, fp);
| ~~~~~~^~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp:27:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h: At global scope:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: ‘void swap8_aligned(void*, long int)’ defined but not used [-Wunused-function]
124 | static void swap8_aligned(void *v, long ndata) {
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:110:13: warning: ‘void swap4_aligned(void*, long int)’ defined but not used [-Wunused-function]
110 | static void swap4_aligned(void *v, long ndata) {
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: ‘void swap2_aligned(void*, long int)’ defined but not used [-Wunused-function]
96 | static void swap2_aligned(void *v, long ndata) {
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: ‘void swap8_unaligned(void*, long int)’ defined but not used [-Wunused-function]
65 | static void swap8_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: ‘void swap4_unaligned(void*, long int)’ defined but not used [-Wunused-function]
46 | static void swap4_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘void swap2_unaligned(void*, long int)’ defined but not used [-Wunused-function]
32 | static void swap2_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function ‘recreate_command_line’:
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1334:11: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=]
1334 | line[0] = '\0';
| ~~~~~~~~^~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1333:26: note: destination object of size 0 allocated by ‘malloc’
1333 | line = (char *) malloc (sizeof(char) * len);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function ‘ascii_get_element(PlyFile*, char*)’:
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1520:14: warning: ‘other_data’ may be used uninitialized [-Wmaybe-uninitialized]
1520 | item = elem_data + prop->offset;
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1423:9: note: ‘other_data’ was declared here
1423 | char *other_data;
| ^~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1497:18: warning: ‘item’ may be used uninitialized [-Wmaybe-uninitialized]
1497 | item += item_size;
| ~~~~~^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1413:20: note: ‘item’ was declared here
1413 | char *elem_data,*item;
| ^~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function ‘binary_get_element(PlyFile*, char*)’:
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1643:14: warning: ‘other_data’ may be used uninitialized [-Wmaybe-uninitialized]
1643 | item = elem_data + prop->offset;
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1555:9: note: ‘other_data’ was declared here
1555 | char *other_data;
| ^~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1620:18: warning: ‘item’ may be used uninitialized [-Wmaybe-uninitialized]
1620 | item += item_size;
| ~~~~~^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1546:9: note: ‘item’ was declared here
1546 | char *item;
| ^~~~
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function ‘framefile(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned long, unsigned long, int, int)’:
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:675:35: warning: ‘__sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
675 | sprintf(answer, "%03x/", d1);
| ^
In function ‘sprintf’,
inlined from ‘DDreldir(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, int, int)’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:675:13,
inlined from ‘framefile(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned long, unsigned long, int, int)’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:779:23:
/usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 5 and 10 bytes into a destination of size 9
30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
31 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
32 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function ‘framefile(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned long, unsigned long, int, int)’:
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:673:35: warning: ‘%03x’ directive writing between 3 and 8 bytes into a region of size between 0 and 5 [-Wformat-overflow=]
673 | sprintf(answer, "%03x/%03x/", d1, d2);
| ^~~~
In function ‘DDreldir(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, int, int)’,
inlined from ‘framefile(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned long, unsigned long, int, int)’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:779:23:
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:673:29: note: directive argument in the range [0, 2147483646]
673 | sprintf(answer, "%03x/%03x/", d1, d2);
| ^~~~~~~~~~~~
In function ‘sprintf’,
inlined from ‘DDreldir(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, int, int)’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:673:13,
inlined from ‘framefile(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned long, unsigned long, int, int)’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:779:23:
/usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 9 and 19 bytes into a destination of size 9
30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
31 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
32 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c: In function ‘get_atom_radius’:
contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:166:16: warning: variable ‘type’ set but not used [-Wunused-but-set-variable]
166 | char *name, *type;
| ^~~~
contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:166:9: warning: variable ‘name’ set but not used [-Wunused-but-set-variable]
166 | char *name, *type;
| ^~~~
contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c: In function ‘read_pqr_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:109:3: warning: ‘strncpy’ output may be truncated copying 80 bytes from a string of length 81 [-Wstringop-truncation]
109 | strncpy(tmp, record, PQR_RECORD_LENGTH);
| ^
contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c: In function ‘read_pqr_structure’:
contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:137:3: warning: ‘strncpy’ output may be truncated copying 4 bytes from a string of length 68 [-Wstringop-truncation]
137 | strncpy(name, record+12, 4); name[4] = 0;
| ^
contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:138:3: warning: ‘strncpy’ output may be truncated copying 4 bytes from a string of length 63 [-Wstringop-truncation]
138 | strncpy(resname, record+17, 4); resname[4] = 0;
| ^
contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:139:3: warning: ‘strncpy’ output may be truncated copying 1 byte from a string of length 59 [-Wstringop-truncation]
139 | strncpy(chain, record+21, 1); chain[1] = 0;
| ^
contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:140:3: warning: ‘strncpy’ output may be truncated copying 4 bytes from a string of length 58 [-Wstringop-truncation]
140 | strncpy(resid, record+22, 4); resid[4] = 0;
| ^
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/psfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c: In function ‘write_psf_structure’:
contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c:782:33: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
782 | if (strlen(atoms[i].type) > fw) {
| ^
In file included from contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c:30:
contrib/uiuc/plugins/molfile_plugin/src/fortread.h: At top level:
contrib/uiuc/plugins/molfile_plugin/src/fortread.h:103:12: warning: ‘fortread_4’ defined but not used [-Wunused-function]
103 | static int fortread_4(void *dest, int n, int swap, FILE *fd) {
| ^~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/fortread.h:55:12: warning: ‘fort_get_endian_reclen’ defined but not used [-Wunused-function]
55 | static int fort_get_endian_reclen(int reclen, int word0, int word1,
| ^~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/fortread.h:36:12: warning: ‘fort_eat_recmark’ defined but not used [-Wunused-function]
36 | static int fort_eat_recmark(FILE *ifp, int recmarklen) {
| ^~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/fortread.h:28:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: ‘swap8_aligned’ defined but not used [-Wunused-function]
124 | static void swap8_aligned(void *v, long ndata) {
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: ‘swap2_aligned’ defined but not used [-Wunused-function]
96 | static void swap2_aligned(void *v, long ndata) {
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: ‘swap8_unaligned’ defined but not used [-Wunused-function]
65 | static void swap8_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: ‘swap4_unaligned’ defined but not used [-Wunused-function]
46 | static void swap4_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘swap2_unaligned’ defined but not used [-Wunused-function]
32 | static void swap2_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/dxplugin.cpp -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/dxplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.cpp -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/edmplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp: In function ‘int read_edm_data(void*, int, float*, float*)’:
contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp:240:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
240 | fgets(readbuf, 13, edm->fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp: In function ‘void eatline(FILE*)’:
contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp:44:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
44 | fgets(readbuf, 1024, fd); // go on to next line
| ~~~~~^~~~~~~~~~~~~~~~~~~
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c: In function ‘open_rst_read’:
contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c:48:11: warning: variable ‘timesteprst’ set but not used [-Wunused-but-set-variable]
48 | double timesteprst;
| ^~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c:67:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
67 | fgets(title, 82, fd);
| ^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c:70:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
70 | fgets(line, 82, fd);
| ^~~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/situsplugin.cpp -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/situsplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp: In function ‘void* open_fs4_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp:79:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
79 | fread(&dataBegin, sizeof(int), 1, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp:48:
contrib/uiuc/plugins/molfile_plugin/src/fortread.h: At global scope:
contrib/uiuc/plugins/molfile_plugin/src/fortread.h:133:13: warning: ‘void strnwscpy(char*, const char*, int)’ defined but not used [-Wunused-function]
133 | static void strnwscpy(char *target, const char *source, const int len) {
| ^~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/fortread.h:55:12: warning: ‘int fort_get_endian_reclen(int, int, int, int*, int*)’ defined but not used [-Wunused-function]
55 | static int fort_get_endian_reclen(int reclen, int word0, int word1,
| ^~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/fortread.h:36:12: warning: ‘int fort_eat_recmark(FILE*, int)’ defined but not used [-Wunused-function]
36 | static int fort_eat_recmark(FILE *ifp, int recmarklen) {
| ^~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp:47:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: ‘void swap8_aligned(void*, long int)’ defined but not used [-Wunused-function]
124 | static void swap8_aligned(void *v, long ndata) {
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: ‘void swap2_aligned(void*, long int)’ defined but not used [-Wunused-function]
96 | static void swap2_aligned(void *v, long ndata) {
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: ‘void swap8_unaligned(void*, long int)’ defined but not used [-Wunused-function]
65 | static void swap8_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: ‘void swap4_unaligned(void*, long int)’ defined but not used [-Wunused-function]
46 | static void swap4_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘void swap2_unaligned(void*, long int)’ defined but not used [-Wunused-function]
32 | static void swap2_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In file included from contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:160:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function ‘angular_momentum_expon’:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:545:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
545 | for (i=0; i<strlen(ang_mom_str); i++) {
| ^
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘have_gamess’:
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1106:8: warning: variable ‘word’ set but not used [-Wunused-but-set-variable]
1106 | char word[3][BUFSIZ];
| ^~~~
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘get_basis_stats’:
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:2264:8: warning: variable ‘word’ set but not used [-Wunused-but-set-variable]
2264 | char word[7][BUFSIZ];
| ^~~~
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘get_wavefunction’:
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:3573:8: warning: variable ‘word’ set but not used [-Wunused-but-set-variable]
3573 | char word[6][BUFSIZ];
| ^~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function ‘eatline’:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:840:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
840 | fgets(readbuf, 1024, fd);
| ^~~~~~~~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: At top level:
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1002:13: warning: ‘print_input_data’ defined but not used [-Wunused-function]
1002 | static void print_input_data(qmdata_t *data) {
| ^~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:162:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:133:12: warning: ‘get_pte_idx’ defined but not used [-Wunused-function]
133 | static int get_pte_idx(const char *label)
| ^~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:109:14: warning: ‘get_pte_vdw_radius’ defined but not used [-Wunused-function]
109 | static float get_pte_vdw_radius(const int idx)
| ^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:102:14: warning: ‘get_pte_mass’ defined but not used [-Wunused-function]
102 | static float get_pte_mass(const int idx)
| ^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:95:20: warning: ‘get_pte_label’ defined but not used [-Wunused-function]
95 | static const char *get_pte_label(const int idx)
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1097:13: warning: ‘whereami’ defined but not used [-Wunused-function]
1097 | static void whereami(FILE *file) {
| ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1077:13: warning: ‘thisline’ defined but not used [-Wunused-function]
1077 | static void thisline(FILE *file) {
| ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1028:12: warning: ‘fpexpftoc’ defined but not used [-Wunused-function]
1028 | static int fpexpftoc(char *ftocstr) {
| ^~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:901:14: warning: ‘strtoupper’ defined but not used [-Wunused-function]
901 | static char *strtoupper(char *s) {
| ^~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:895:12: warning: ‘iswhiteline’ defined but not used [-Wunused-function]
895 | static int iswhiteline(char *s) {
| ^~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:585:13: warning: ‘print_matrix4’ defined but not used [-Wunused-function]
585 | static void print_matrix4(const float mat[16]) {
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp: In function ‘int read_spider_data(void*, int, float*, float*)’:
contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp:286:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
286 | fread(datablock, total * sizeof(float), 1, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp:36:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h: At global scope:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: ‘void swap8_aligned(void*, long int)’ defined but not used [-Wunused-function]
124 | static void swap8_aligned(void *v, long ndata) {
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: ‘void swap2_aligned(void*, long int)’ defined but not used [-Wunused-function]
96 | static void swap2_aligned(void *v, long ndata) {
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: ‘void swap8_unaligned(void*, long int)’ defined but not used [-Wunused-function]
65 | static void swap8_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: ‘void swap4_unaligned(void*, long int)’ defined but not used [-Wunused-function]
46 | static void swap4_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘void swap2_unaligned(void*, long int)’ defined but not used [-Wunused-function]
32 | static void swap2_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/stlplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘read_gamess_rundata’:
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:615:3: warning: ‘strncpy’ output may be truncated copying 81 bytes from a string of length 8191 [-Wstringop-truncation]
615 | strncpy(sys_data->basis_string, data->basis_string,
| ^
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:620:3: warning: ‘strncpy’ output may be truncated copying 4096 bytes from a string of length 8191 [-Wstringop-truncation]
620 | strncpy(sys_data->runtitle, data->runtitle, sizeof(sys_data->runtitle));
| ^
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:621:3: warning: ‘strncpy’ output may be truncated copying 81 bytes from a string of length 8191 [-Wstringop-truncation]
621 | strncpy(sys_data->geometry, data->geometry, sizeof(sys_data->geometry));
| ^
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:622:3: warning: ‘strncpy’ output may be truncated copying 81 bytes from a string of length 8191 [-Wstringop-truncation]
622 | strncpy(sys_data->version_string, data->version_string,
| ^
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘get_coordinates’:
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1618:5: warning: ‘strncpy’ output may be truncated copying 11 bytes from a string of length 8191 [-Wstringop-truncation]
1618 | strncpy(atm->type, atname, sizeof(atm->type));
| ^
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp: In function ‘int read_rawgraphics(void*, int*, const molfile_graphics_t**)’:
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:96:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
96 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:104:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
104 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:119:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
119 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:131:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
131 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:153:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
153 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:162:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
162 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:171:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
171 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘get_runtitle’:
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1459:3: warning: ‘strncpy’ specified bound 8192 equals destination size [-Wstringop-truncation]
1459 | strncpy(data->runtitle,trimright(buffer),sizeof(data->runtitle));
| ^
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.c -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.c: In function ‘read_tinker_structure’:
contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.c:103:5: warning: ‘strncpy’ output may be truncated copying 16 bytes from a string of length 1023 [-Wstringop-truncation]
103 | strncpy(atom->name, buffer, sizeof(atom->name));
| ^
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp: In function ‘void* open_uhbd_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp:90:22: warning: variable ‘o’ set but not used [-Wunused-but-set-variable]
90 | float orig[3], ra, o[3], s[3]; //xdelta[3], ydelta[3], zdelta[3];
| ^
contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp:90:28: warning: variable ‘s’ set but not used [-Wunused-but-set-variable]
90 | float orig[3], ra, o[3], s[3]; //xdelta[3], ydelta[3], zdelta[3];
| ^
contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp: In function ‘int read_uhbd_data(void*, int, float*, float*)’:
contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp:254:66: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
254 | if (fread(datablock + z*xysize, sizeof(float), xysize, fd) != xysize) {
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp: In function ‘void* open_uhbd_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp:102:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
102 | fread(&headersize, sizeof(int), 1, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp:47:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h: At global scope:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: ‘void swap8_aligned(void*, long int)’ defined but not used [-Wunused-function]
124 | static void swap8_aligned(void *v, long ndata) {
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: ‘void swap2_aligned(void*, long int)’ defined but not used [-Wunused-function]
96 | static void swap2_aligned(void *v, long ndata) {
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: ‘void swap8_unaligned(void*, long int)’ defined but not used [-Wunused-function]
65 | static void swap8_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘void swap2_unaligned(void*, long int)’ defined but not used [-Wunused-function]
32 | static void swap2_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘get_contrl’:
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1981:3: warning: ‘strncpy’ specified bound 8192 equals destination size [-Wstringop-truncation]
1981 | strncpy(data->geometry, trimright(temp+7), sizeof(data->geometry));
| ^
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘get_contrl_firefly’:
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1818:3: warning: ‘strncpy’ specified bound 8192 equals destination size [-Wstringop-truncation]
1818 | strncpy(data->geometry, trimright(temp+7), sizeof(data->geometry));
| ^
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘get_basis_options’:
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1422:5: warning: ‘__strncat_chk’ output may be truncated copying 1 byte from a string of length 9 [-Wstringop-truncation]
1422 | strncat(data->basis_string, &data->gbasis[3], 1);
| ^
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1411:5: warning: ‘__strncat_chk’ output may be truncated copying 1 byte from a string of length 9 [-Wstringop-truncation]
1411 | strncat(data->basis_string, &data->gbasis[2], 1);
| ^
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘get_proc_mem.isra.0’:
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1279:5: warning: ‘strncpy’ output may be truncated copying 256 bytes from a string of length 8191 [-Wstringop-truncation]
1279 | strncpy(data->memory,&word[2][0],sizeof(data->memory));
| ^
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1272:5: warning: ‘strncpy’ specified bound 256 equals destination size [-Wstringop-truncation]
1272 | strncpy(data->memory,trimright(temp),sizeof(data->memory));
| ^
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c: In function ‘read_vasp5xdatcar_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:224:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
224 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c: In function ‘read_vasp5xdatcar_structure’:
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:174:27: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
174 | for (i = 0; i < 2; ++i) fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:180:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
180 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:189:26: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
189 | for (i = 0; i < 3; ++i) fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:194:4: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
194 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:204:26: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
204 | for (i = 0; i < 8; ++i) fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c: In function ‘open_vasp5xdatcar_read’:
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:69:27: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
69 | for (i = 0; i < 5; ++i) fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:72:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
72 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:77:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
77 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:40:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h: At top level:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: ‘get_pte_idx_from_string’ defined but not used [-Wunused-function]
160 | static int get_pte_idx_from_string(const char *label) {
| ^~~~~~~~~~~~~~~~~~~~~~~
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘get_input_structure’:
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1682:5: warning: ‘strncpy’ output may be truncated copying 11 bytes from a string of length 8191 [-Wstringop-truncation]
1682 | strncpy(atm->type, atname, sizeof(atm->type));
| ^
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c: In function ‘read_vaspchgcar_data’:
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:237:60: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
237 | for (n = 0; n < data->numatoms + data->version + 5; ++n) fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:282:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
282 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c: In function ‘read_vaspchgcar_metadata’:
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:150:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
150 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c: In function ‘open_vaspchgcar_read’:
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:71:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
71 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:75:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
75 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:81:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
81 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:92:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
92 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:103:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
103 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:131:44: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
131 | for (i = 0; i < data->numatoms + 2; ++i) fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:41:
contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h: At top level:
contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h:111:13: warning: ‘vasp_timestep_unitcell’ defined but not used [-Wunused-function]
111 | static void vasp_timestep_unitcell(molfile_timestep_t *ts, vasp_plugindata_t *data)
| ^~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function ‘get_traj_frame.isra.0’:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:819:5: warning: ‘strncpy’ output may be truncated copying 10 bytes from a string of length 10 [-Wstringop-truncation]
819 | strncpy((*atoms)[i].type, (*atoms)[indexmap[i]].type, 10);
| ^
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c: In function ‘read_vaspoutcar_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:239:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
239 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:242:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
242 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c: In function ‘read_vaspoutcar_structure’:
contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:204:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
204 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c: In function ‘open_vaspoutcar_read’:
contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:87:10: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
87 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:40:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h: At top level:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: ‘get_pte_idx_from_string’ defined but not used [-Wunused-function]
160 | static int get_pte_idx_from_string(const char *label) {
| ^~~~~~~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c: In function ‘read_vaspparchg_data’:
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:238:60: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
238 | for (n = 0; n < data->numatoms + data->version + 5; ++n) fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c: In function ‘read_vaspparchg_metadata’:
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp: In function ‘void line3(FILE*, GRASSP*)’:
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:186:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
186 | fread(line3, 1, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:150:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
150 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp: In function ‘int read_rawgraphics(void*, int*, const molfile_graphics_t**)’:
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:284:3: note: in expansion of macro ‘TRASH’
284 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:285:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
285 | fread(line, 1, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:291:3: note: in expansion of macro ‘TRASH’
291 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:305:3: note: in expansion of macro ‘TRASH’
305 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:306:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
306 | fread(line, 1, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:307:3: note: in expansion of macro ‘TRASH’
307 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:311:3: note: in expansion of macro ‘TRASH’
311 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:313:3: note: in expansion of macro ‘TRASH’
313 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:318:3: note: in expansion of macro ‘TRASH’
318 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:319:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
319 | fread(line, 1, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:320:3: note: in expansion of macro ‘TRASH’
320 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:328:3: note: in expansion of macro ‘TRASH’
328 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:329:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
329 | fread(line, 1, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:330:3: note: in expansion of macro ‘TRASH’
330 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:354:3: note: in expansion of macro ‘TRASH’
354 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:355:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
355 | fread(vertex, 3 * sizeof(float), nvert, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:356:3: note: in expansion of macro ‘TRASH’
356 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:357:3: note: in expansion of macro ‘TRASH’
357 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:358:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
358 | fread(access, 3 * sizeof(float), nvert, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:359:3: note: in expansion of macro ‘TRASH’
359 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:360:3: note: in expansion of macro ‘TRASH’
360 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:361:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
361 | fread(normal, 3 * sizeof(float), nvert, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:362:3: note: in expansion of macro ‘TRASH’
362 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:371:5: note: in expansion of macro ‘TRASH’
371 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:372:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
372 | fread(triangle, 3 * sizeof(int), ntriangles, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:373:5: note: in expansion of macro ‘TRASH’
373 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:374:5: note: in expansion of macro ‘TRASH’
374 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:375:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
375 | fread(properties, 3 * sizeof(float), nvert, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:394:5: note: in expansion of macro ‘TRASH’
394 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:395:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
395 | fread(striangle, sizeof(short), 3 * ntriangles, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:396:5: note: in expansion of macro ‘TRASH’
396 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:397:5: note: in expansion of macro ‘TRASH’
397 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:398:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
398 | fread(properties, sizeof(float), 3 * nvert, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:40:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h: At global scope:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: ‘void swap8_aligned(void*, long int)’ defined but not used [-Wunused-function]
124 | static void swap8_aligned(void *v, long ndata) {
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: ‘void swap8_unaligned(void*, long int)’ defined but not used [-Wunused-function]
65 | static void swap8_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: ‘void swap4_unaligned(void*, long int)’ defined but not used [-Wunused-function]
46 | static void swap4_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘void swap2_unaligned(void*, long int)’ defined but not used [-Wunused-function]
32 | static void swap2_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c: In function ‘open_vaspparchg_read’:
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:71:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
71 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:75:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
75 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:81:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
81 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:92:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
92 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:103:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
103 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:131:44: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
131 | for (i = 0; i < data->numatoms + 2; ++i) fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:41:
contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h: At top level:
contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h:111:13: warning: ‘vasp_timestep_unitcell’ defined but not used [-Wunused-function]
111 | static void vasp_timestep_unitcell(molfile_timestep_t *ts, vasp_plugindata_t *data)
| ^~~~~~~~~~~~~~~~~~~~~~
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/grdplugin.cpp -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/grdplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function ‘write_vaspposcar_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:360:40: warning: argument to ‘sizeof’ in ‘strncpy’ call is the same expression as the source; did you mean to use the size of the destination? [-Wsizeof-pointer-memaccess]
360 | strncpy(tmptype, atom->type, sizeof(atom->type));
| ^
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function ‘read_vaspposcar_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:232:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
232 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:237:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
237 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:246:43: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
246 | for (i = 0; i < data->version - 2; ++i) fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:249:35: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
249 | if (tolower(lineptr[0]) == 's') fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:256:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
256 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function ‘read_vaspposcar_structure’:
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:195:42: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
195 | for (i = 0; i < data->version + 3; ++i) fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:198:34: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
198 | if (tolower(lineptr[0]) == 's') fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:203:4: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
203 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function ‘open_vaspposcar_read’:
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:69:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
69 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:73:27: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
73 | for (i = 0; i < 5; ++i) fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:87:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
87 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:40:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h: At top level:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: ‘get_pte_idx_from_string’ defined but not used [-Wunused-function]
160 | static int get_pte_idx_from_string(const char *label) {
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/grdplugin.cpp:51:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: ‘void swap8_aligned(void*, long int)’ defined but not used [-Wunused-function]
124 | static void swap8_aligned(void *v, long ndata) {
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: ‘void swap2_aligned(void*, long int)’ defined but not used [-Wunused-function]
96 | static void swap2_aligned(void *v, long ndata) {
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: ‘void swap8_unaligned(void*, long int)’ defined but not used [-Wunused-function]
65 | static void swap8_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: ‘void swap4_unaligned(void*, long int)’ defined but not used [-Wunused-function]
46 | static void swap4_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘void swap2_unaligned(void*, long int)’ defined but not used [-Wunused-function]
32 | static void swap2_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/gridplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp: In function ‘void* open_grid_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp:84:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
84 | fread(&dataBegin, sizeof(int), 1, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp:60:
contrib/uiuc/plugins/molfile_plugin/src/fortread.h: At global scope:
contrib/uiuc/plugins/molfile_plugin/src/fortread.h:133:13: warning: ‘void strnwscpy(char*, const char*, int)’ defined but not used [-Wunused-function]
133 | static void strnwscpy(char *target, const char *source, const int len) {
| ^~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/fortread.h:55:12: warning: ‘int fort_get_endian_reclen(int, int, int, int*, int*)’ defined but not used [-Wunused-function]
55 | static int fort_get_endian_reclen(int reclen, int word0, int word1,
| ^~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/fortread.h:36:12: warning: ‘int fort_eat_recmark(FILE*, int)’ defined but not used [-Wunused-function]
36 | static int fort_eat_recmark(FILE *ifp, int recmarklen) {
| ^~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp:59:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: ‘void swap8_aligned(void*, long int)’ defined but not used [-Wunused-function]
124 | static void swap8_aligned(void *v, long ndata) {
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: ‘void swap2_aligned(void*, long int)’ defined but not used [-Wunused-function]
96 | static void swap2_aligned(void *v, long ndata) {
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: ‘void swap8_unaligned(void*, long int)’ defined but not used [-Wunused-function]
65 | static void swap8_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: ‘void swap4_unaligned(void*, long int)’ defined but not used [-Wunused-function]
46 | static void swap4_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘void swap2_unaligned(void*, long int)’ defined but not used [-Wunused-function]
32 | static void swap2_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c: In function ‘read_vaspxdatcar_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:283:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
283 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c: In function ‘read_vaspxdatcar_structure’:
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:228:27: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
228 | for (i = 0; i < 4; ++i) fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:233:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
233 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:237:32: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
237 | for (i = 0; i < 2; ++i) fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:252:44: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
252 | for (i = 0; i < 10 - data->version; ++i) fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c: In function ‘open_vaspxdatcar_read’:
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:89:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
89 | fgets(lineptr, LINESIZE, poscar);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:92:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
92 | fgets(lineptr, LINESIZE, poscar);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:97:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
97 | fgets(lineptr, LINESIZE, poscar);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:111:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
111 | fgets(lineptr, LINESIZE, poscar);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:121:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
121 | fgets(lineptr, LINESIZE, poscar);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:40:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h: At top level:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: ‘get_pte_idx_from_string’ defined but not used [-Wunused-function]
160 | static int get_pte_idx_from_string(const char *label) {
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp:30:
contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h: In function ‘int mdio_readline(md_file*, char*, int, int)’:
contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h:426:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
426 | fgets(buf, n, mf->f);
| ~~~~~^~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h:48:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h: At global scope:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: ‘void swap2_aligned(void*, long int)’ defined but not used [-Wunused-function]
96 | static void swap2_aligned(void *v, long ndata) {
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: ‘void swap8_unaligned(void*, long int)’ defined but not used [-Wunused-function]
65 | static void swap8_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: ‘void swap4_unaligned(void*, long int)’ defined but not used [-Wunused-function]
46 | static void swap4_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘void swap2_unaligned(void*, long int)’ defined but not used [-Wunused-function]
32 | static void swap2_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c: In function ‘read_vaspxml_structure’:
contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:139:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
139 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:144:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
144 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c: In function ‘open_vaspxml_read’:
contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:86:8: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
86 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:92:8: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
92 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:47:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h: At top level:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: ‘get_pte_idx_from_string’ defined but not used [-Wunused-function]
160 | static int get_pte_idx_from_string(const char *label) {
| ^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h: In function ‘g96_header(md_file*, char*, int, float*) [clone .constprop.0]’:
contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h:650:39: warning: ‘strncpy’ output may be truncated copying 80 bytes from a string of length 500 [-Wstringop-truncation]
650 | if (title && titlelen) strncpy(title, buf, titlelen);
| ^
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp: In function ‘open_gro_read(char const*, char const*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp:103:12: warning: ‘strncpy’ output may be truncated copying 80 bytes from a string of length 80 [-Wstringop-truncation]
103 | strncpy(gmx->meta->title, mdh.title, 80);
| ^
contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c: In function ‘vtf_open_file_read’:
contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:538:9: warning: ‘__strncat_chk’ output may be truncated copying 200 bytes from a string of length 254 [-Wstringop-truncation]
538 | strncat(msg, keyword, 200);
| ^
contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:629:7: warning: ‘__strncat_chk’ output may be truncated copying 200 bytes from a string of length 254 [-Wstringop-truncation]
629 | strncat(msg, keyword, 200);
| ^
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/hash.c -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/hash.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c: In function ‘vtf_read_bonds’:
contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:147:48: warning: ‘%s’ directive argument is null [-Wformat-overflow=]
147 | sprintf(message, "vtfplugin:%d: error: %s: \"%s\"\n",
| ^~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/inthash.c -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/inthash.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp: In function ‘int read_vtk_data(void*, int, float*, float*)’:
contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp:276:45: warning: variable ‘total’ set but not used [-Wunused-but-set-variable]
276 | int x, y, z, xsize, ysize, zsize, xysize, total;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp: In function ‘int read_vtk_data_ex(void*, molfile_volumetric_readwrite_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp:338:45: warning: variable ‘total’ set but not used [-Wunused-but-set-variable]
338 | int x, y, z, xsize, ysize, zsize, xysize, total;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp:371:15: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
371 | fscanf(fd, "%lf %lf %lf", &vx, &vy, &vz);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp: In function ‘int read_vtk_data(void*, int, float*, float*)’:
contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp:306:15: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
306 | fscanf(fd, "%lf %lf %lf", &vx, &vy, &vz);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp:72:
contrib/uiuc/plugins/include/vmdconio.h: At global scope:
contrib/uiuc/plugins/include/vmdconio.h:56:12: warning: ‘int vmdcon_printf(int, const char*, ...)’ defined but not used [-Wunused-function]
56 | static int vmdcon_printf(int lvl, const char *fmt, ...) {
| ^~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Parse.cpp -o build/temp.linux-x86_64-cpython-311/layer0/Parse.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function ‘int read_xbgf_timestep(void*, int, molfile_timestep_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:288:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
288 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:297:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
297 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function ‘int read_xbgf_bonds_aux(void*, int*, int**, int**, float**)’:
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:365:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
365 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:387:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
387 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:395:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
395 | fgets(nextline, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:455:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
455 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function ‘int read_xbgf_structure(void*, int*, molfile_atom_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:241:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
241 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:250:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
250 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function ‘void* open_xbgf_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:72:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
72 | fgets(line, LINESIZE, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Pixmap.cpp -o build/temp.linux-x86_64-cpython-311/layer0/Pixmap.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function ‘read_xbgf_timestep(void*, int, molfile_timestep_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:143:12: warning: ‘strncpy’ output may be truncated copying 10 bytes from a string of length 223 [-Wstringop-truncation]
143 | strncpy(numstr, record + 32, 10);
| ^
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:148:12: warning: ‘strncpy’ output may be truncated copying 10 bytes from a string of length 213 [-Wstringop-truncation]
148 | strncpy(numstr+10, record + 42, 10);
| ^
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:153:12: warning: ‘strncpy’ output may be truncated copying 10 bytes from a string of length 203 [-Wstringop-truncation]
153 | strncpy(numstr+20, record + 52, 10);
| ^
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function ‘read_xbgf_structure(void*, int*, molfile_atom_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:172:10: warning: ‘strncpy’ output may be truncated copying 5 bytes from a string of length 241 [-Wstringop-truncation]
172 | strncpy(name, record + 14, 5);
| ^
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:177:10: warning: ‘strncpy’ output may be truncated copying 4 bytes from a string of length 235 [-Wstringop-truncation]
177 | strncpy(resname, record + 20, 4);
| ^
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:182:10: warning: ‘strncpy’ output may be truncated copying 4 bytes from a string of length 154 [-Wstringop-truncation]
182 | strncpy(segname, record + 101, 4);
| ^
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:197:10: warning: ‘strncpy’ output may be truncated copying 5 bytes from a string of length 192 [-Wstringop-truncation]
197 | strncpy(type, record+63, 5);
| ^
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp: In function ‘void eatline(FILE*)’:
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:238:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
238 | fgets(readbuf, 1024, fd); // go on to next line
| ~~~~~^~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp: In function ‘void* open_xsf_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:408:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
408 | fgets(readbuf, 256, xsf->fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:442:20: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
442 | fgets(readbuf, 256, xsf->fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:444:20: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
444 | fgets(readbuf, 256, xsf->fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/PostProcess.cpp -o build/temp.linux-x86_64-cpython-311/layer0/PostProcess.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:446:20: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
446 | fgets(readbuf, 256, xsf->fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:448:20: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
448 | fgets(readbuf, 256, xsf->fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:450:20: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
450 | fgets(readbuf, 256, xsf->fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:473:22: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
473 | fgets(readbuf, 256, xsf->fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:508:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
508 | fgets(readbuf, 256, xsf->fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:37:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h: At global scope:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: ‘int get_pte_idx_from_string(const char*)’ defined but not used [-Wunused-function]
160 | static int get_pte_idx_from_string(const char *label) {
| ^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp: In function ‘read_xsf_structure(void*, int*, molfile_atom_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:597:20: warning: ‘strncpy’ output may be truncated copying 16 bytes from a string of length 1023 [-Wstringop-truncation]
597 | strncpy(atom->name, buffer, sizeof(atom->name));
| ^
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp: In function ‘open_xsf_read(char const*, char const*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:438:22: warning: ‘strncpy’ output may be truncated copying 255 bytes from a string of length 255 [-Wstringop-truncation]
438 | strncpy(set->dataname, readbuf, 255);
| ^
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In file included from contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c:57:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: ‘get_pte_idx_from_string’ defined but not used [-Wunused-function]
160 | static int get_pte_idx_from_string(const char *label) {
| ^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c: In function ‘read_xyz_structure’:
contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c:133:7: warning: ‘strncpy’ output may be truncated copying 16 bytes from a string of length 1023 [-Wstringop-truncation]
133 | strncpy(atom->name, buffer, sizeof(atom->name));
| ^
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Block.cpp -o build/temp.linux-x86_64-cpython-311/layer0/Block.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/ShaderMgr.cpp -o build/temp.linux-x86_64-cpython-311/layer0/ShaderMgr.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/CarveHelper.cpp -o build/temp.linux-x86_64-cpython-311/layer0/CarveHelper.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In file included from layer0/CarveHelper.cpp:8:
layer0/CarveHelper.h: In constructor ‘CarveHelper::CarveHelper(PyMOLGlobals*, float, const float*, std::size_t)’:
layer0/CarveHelper.h:23:9: warning: ‘CarveHelper::m_cutoff’ will be initialized after [-Wreorder]
23 | float m_cutoff;
| ^~~~~~~~
layer0/CarveHelper.h:22:16: warning: ‘const float* CarveHelper::m_vertices’ [-Wreorder]
22 | const float* m_vertices;
| ^~~~~~~~~~
layer0/CarveHelper.cpp:20:1: warning: when initialized here [-Wreorder]
20 | CarveHelper::CarveHelper(PyMOLGlobals* G, float cutoff, const float* vertices,
| ^~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/ContourSurf.cpp -o build/temp.linux-x86_64-cpython-311/layer0/ContourSurf.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In file included from /usr/include/c++/13/cassert:44,
from layer0/Field.h:24,
from layer0/Isosurf.h:24,
from layer0/ContourSurf.cpp:11:
layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = float; SizeTs = {long unsigned int, long unsigned int, long unsigned int}]’:
layer0/Field.h:114:19: required from ‘T& CField::get(SizeTs ...) [with T = float; SizeTs = {long unsigned int, long unsigned int, long unsigned int}]’
layer0/ContourSurf.cpp:409:37: required from here
layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare]
100 | assert(sizeof...(pos) <= n_dim());
| ~~~~~~~~~~~~~~~^~~~~~~~~~
layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = float; SizeTs = {long unsigned int, long unsigned int, long unsigned int, int}]’:
layer0/Field.h:114:19: required from ‘T& CField::get(SizeTs ...) [with T = float; SizeTs = {long unsigned int, long unsigned int, long unsigned int, int}]’
layer0/ContourSurf.cpp:419:36: required from here
layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare]
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Crystal.cpp -o build/temp.linux-x86_64-cpython-311/layer0/Crystal.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Deferred.cpp -o build/temp.linux-x86_64-cpython-311/layer0/Deferred.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Err.cpp -o build/temp.linux-x86_64-cpython-311/layer0/Err.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Feedback.cpp -o build/temp.linux-x86_64-cpython-311/layer0/Feedback.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Field.cpp -o build/temp.linux-x86_64-cpython-311/layer0/Field.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer0/Field.cpp: In function ‘PyObject* FieldAsNumPyArray(CField*, short int)’:
layer0/Field.cpp:83:1: warning: label ‘ok_except1’ defined but not used [-Wunused-label]
83 | ok_except1:
| ^~~~~~~~~~
layer0/Field.cpp: In function ‘CField* FieldNewFromPyList(PyMOLGlobals*, PyObject*)’:
layer0/Field.cpp:179:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
179 | ok = ok && I->size() == size;
| ~~~~~~~~~~^~~~~~~
In file included from /usr/include/c++/13/cassert:44,
from layer0/Field.h:24,
from layer0/Field.cpp:26:
layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = float; SizeTs = {int, int, int}]’:
layer0/Field.h:114:19: required from ‘T& CField::get(SizeTs ...) [with T = float; SizeTs = {int, int, int}]’
layer0/Field.cpp:343:17: required from here
layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare]
100 | assert(sizeof...(pos) <= n_dim());
| ~~~~~~~~~~~~~~~^~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/File.cpp -o build/temp.linux-x86_64-cpython-311/layer0/File.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/GenericBuffer.cpp -o build/temp.linux-x86_64-cpython-311/layer0/GenericBuffer.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/ShaderPrg.cpp -o build/temp.linux-x86_64-cpython-311/layer0/ShaderPrg.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/GraphicsUtil.cpp -o build/temp.linux-x86_64-cpython-311/layer0/GraphicsUtil.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Isosurf.cpp -o build/temp.linux-x86_64-cpython-311/layer0/Isosurf.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Sphere.cpp -o build/temp.linux-x86_64-cpython-311/layer0/Sphere.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Tetsurf.cpp -o build/temp.linux-x86_64-cpython-311/layer0/Tetsurf.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In file included from /usr/include/c++/13/cassert:44,
from layer0/Field.h:24,
from layer0/Isosurf.h:24,
from layer0/Isosurf.cpp:25:
layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = float; SizeTs = {int, int, int, int}]’:
layer0/Isosurf.cpp:552:24: required from here
layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare]
100 | assert(sizeof...(pos) <= n_dim());
| ~~~~~~~~~~~~~~~^~~~~~~~~~
layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = float; SizeTs = {int, int, int}]’:
layer0/Isosurf.cpp:1459:32: required from here
layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare]
layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = PointType; SizeTs = {int, int, int, int}]’:
layer0/Field.h:134:26: required from ‘T* CFieldTyped<T>::ptr(SizeTs ...) [with SizeTs = {int, int, int, int}; T = PointType]’
layer0/Isosurf.cpp:1617:19: required from here
layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare]
layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = int; SizeTs = {int, int, int}]’:
layer0/Field.h:114:19: required from ‘T& CField::get(SizeTs ...) [with T = int; SizeTs = {int, int, int}]’
layer0/Field.h:144:26: required from ‘T& CFieldTyped<T>::get(SizeTs ...) [with SizeTs = {int, int, int}; T = int]’
layer0/Isosurf.cpp:1456:15: required from here
layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare]
layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = int; SizeTs = {int, int, int, int}]’:
layer0/Field.h:114:19: required from ‘T& CField::get(SizeTs ...) [with T = int; SizeTs = {int, int, int, int}]’
layer0/Field.h:144:26: required from ‘T& CFieldTyped<T>::get(SizeTs ...) [with SizeTs = {int, int, int, int}; T = int]’
layer0/Isosurf.cpp:1487:13: required from here
layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare]
In file included from /usr/include/c++/13/cassert:44,
from layer0/Field.h:24,
from layer0/Isosurf.h:24,
from layer0/Tetsurf.cpp:24:
layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = float; SizeTs = {int, int, int, int}]’:
layer0/Tetsurf.cpp:802:18: required from here
layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare]
100 | assert(sizeof...(pos) <= n_dim());
| ~~~~~~~~~~~~~~~^~~~~~~~~~
layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = PointType; SizeTs = {int, int, int, int}]’:
layer0/Tetsurf.cpp:831:27: required from here
layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare]
layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = int; SizeTs = {int, int, int}]’:
layer0/Field.h:114:19: required from ‘T& CField::get(SizeTs ...) [with T = int; SizeTs = {int, int, int}]’
layer0/Tetsurf.cpp:791:16: required from here
layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare]
layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = float; SizeTs = {int, int, int}]’:
layer0/Field.h:114:19: required from ‘T& CField::get(SizeTs ...) [with T = float; SizeTs = {int, int, int}]’
layer0/Tetsurf.cpp:822:18: required from here
layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare]
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Texture.cpp -o build/temp.linux-x86_64-cpython-311/layer0/Texture.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Map.cpp -o build/temp.linux-x86_64-cpython-311/layer0/Map.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Tracker.cpp -o build/temp.linux-x86_64-cpython-311/layer0/Tracker.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Match.cpp -o build/temp.linux-x86_64-cpython-311/layer0/Match.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Triangle.cpp -o build/temp.linux-x86_64-cpython-311/layer0/Triangle.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Matrix.cpp -o build/temp.linux-x86_64-cpython-311/layer0/Matrix.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Util.cpp -o build/temp.linux-x86_64-cpython-311/layer0/Util.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/MemoryDebug.cpp -o build/temp.linux-x86_64-cpython-311/layer0/MemoryDebug.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer0/MemoryDebug.cpp: In function ‘void* VLADeleteRaw(void*, int, unsigned int)’:
layer0/MemoryDebug.cpp:223:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘ov_size’ {aka ‘long unsigned int’} [-Wsign-compare]
223 | if(index < -old_size)
| ~~~~~~^~~~~~~~~~~
layer0/MemoryDebug.cpp:235:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘ov_size’ {aka ‘long unsigned int’} [-Wsign-compare]
235 | (index < vla->size) && ((count + index) <= vla->size)) {
| ~~~~~~^~~~~~~~~~~
layer0/MemoryDebug.cpp: In function ‘void* VLAInsertRaw(void*, int, unsigned int)’:
layer0/MemoryDebug.cpp:256:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘ov_size’ {aka ‘long unsigned int’} [-Wsign-compare]
256 | if(index < -old_size)
| ~~~~~~^~~~~~~~~~~
layer0/MemoryDebug.cpp:263:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘ov_size’ {aka ‘long unsigned int’} [-Wsign-compare]
263 | if(index > old_size)
| ~~~~~~^~~~~~~~~~
layer0/MemoryDebug.cpp:266:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘ov_size’ {aka ‘long unsigned int’} [-Wsign-compare]
266 | if((index >= 0) && (count > 0) && (index <= old_size)) {
| ~~~~~~^~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/MemoryUsage.cpp -o build/temp.linux-x86_64-cpython-311/layer0/MemoryUsage.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Util2.cpp -o build/temp.linux-x86_64-cpython-311/layer0/Util2.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer0/MemoryUsage.cpp: In function ‘size_t pymol::memory_usage()’:
layer0/MemoryUsage.cpp:38:21: warning: use of assignment suppression and length modifier together in gnu_scanf format [-Wformat=]
38 | std::fscanf(fp, "%*zu%zu", &vmRSS);
| ^~~~~~~~~
layer0/MemoryUsage.cpp:38:16: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
38 | std::fscanf(fp, "%*zu%zu", &vmRSS);
| ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/MyPNG.cpp -o build/temp.linux-x86_64-cpython-311/layer0/MyPNG.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer0/MyPNG.cpp: In function ‘int MyPNGWrite(const char*, const pymol::Image&, float, int, int, float, float, png_outbuf_t*)’:
layer0/MyPNG.cpp:299:20: warning: comparison of integer expressions of different signedness: ‘png_uint_32’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
299 | for(k = 0; k < height; k++)
| ~~^~~~~~~~
layer0/MyPNG.cpp:340:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
340 | for(b = 0; b < height; b++) {
| ~~^~~~~~~~
layer0/MyPNG.cpp:341:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
341 | for(a = 0; a < width; a++) {
| ~~^~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Vector.cpp -o build/temp.linux-x86_64-cpython-311/layer0/Vector.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/FontGLUTHel10.cpp -o build/temp.linux-x86_64-cpython-311/layer1/FontGLUTHel10.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/FontGLUTHel12.cpp -o build/temp.linux-x86_64-cpython-311/layer1/FontGLUTHel12.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/FontGLUTHel18.cpp -o build/temp.linux-x86_64-cpython-311/layer1/FontGLUTHel18.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Word.cpp -o build/temp.linux-x86_64-cpython-311/layer0/Word.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/FontType.cpp -o build/temp.linux-x86_64-cpython-311/layer1/FontType.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/ccealignmodule.cpp -o build/temp.linux-x86_64-cpython-311/layer0/ccealignmodule.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In file included from include/tnt/tnt.h:49,
from layer0/ccealignmodule.cpp:39:
include/tnt/tnt_array2d_utils.h: In function ‘std::istream& TNT::operator>>(std::istream&, Array2D<T>&)’:
include/tnt/tnt_array2d_utils.h:62:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
62 | for (int i=0; i<M; i++)
| ^~~
include/tnt/tnt_array2d_utils.h:68:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
68 | A = B;
| ^
In file included from include/tnt/tnt.h:50:
include/tnt/tnt_array3d_utils.h: In function ‘std::istream& TNT::operator>>(std::istream&, Array3D<T>&)’:
include/tnt/tnt_array3d_utils.h:47:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
47 | for (int i=0; i<M; i++)
| ^~~
include/tnt/tnt_array3d_utils.h:52:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
52 | A = B;
| ^
In file included from include/tnt/tnt.h:56:
include/tnt/tnt_fortran_array2d_utils.h: In function ‘std::istream& TNT::operator>>(std::istream&, Fortran_Array2D<T>&)’:
include/tnt/tnt_fortran_array2d_utils.h:61:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
61 | for (int i=1; i<=M; i++)
| ^~~
include/tnt/tnt_fortran_array2d_utils.h:67:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
67 | A = B;
| ^
In file included from include/tnt/tnt.h:57:
include/tnt/tnt_fortran_array3d_utils.h: In function ‘std::istream& TNT::operator>>(std::istream&, Fortran_Array3D<T>&)’:
include/tnt/tnt_fortran_array3d_utils.h:65:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
65 | for (int i=1; i<=M; i++)
| ^~~
include/tnt/tnt_fortran_array3d_utils.h:70:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
70 | A = B;
| ^
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/Movie.cpp -o build/temp.linux-x86_64-cpython-311/layer1/Movie.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/marching_cubes.cpp -o build/temp.linux-x86_64-cpython-311/layer0/marching_cubes.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer0/marching_cubes.cpp: In function ‘mc::Mesh mc::march(const Field&, float, bool)’:
layer0/marching_cubes.cpp:517:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare]
517 | for (int z = 0; z < zDim; ++z) {
| ~~^~~~~~
layer0/marching_cubes.cpp:550:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare]
550 | for (int z = 0; z < zEnd; ++z) {
| ~~^~~~~~
layer0/marching_cubes.cpp:603:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
603 | if (z == zEnd - 1) {
| ~~^~~~~~~~~~~
layer0/marching_cubes.cpp:608:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
608 | if (z == zEnd - 1) {
| ~~^~~~~~~~~~~
layer0/marching_cubes.cpp: In function ‘void mc::calculateNormals(Mesh&)’:
layer0/marching_cubes.cpp:681:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
681 | for (int i = 0; i < vertexCount; ++i) {
| ~~^~~~~~~~~~~~~
layer0/marching_cubes.cpp:686:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
686 | for (int i = 0; i < triangleCount; ++i) {
| ~~^~~~~~~~~~~~~~~
layer0/marching_cubes.cpp:720:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
720 | for (int i = 0; i < vertexCount; ++i) {
| ~~^~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/os_gl.cpp -o build/temp.linux-x86_64-cpython-311/layer0/os_gl.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/Basis.cpp -o build/temp.linux-x86_64-cpython-311/layer1/Basis.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/Ortho.cpp -o build/temp.linux-x86_64-cpython-311/layer1/Ortho.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/ButMode.cpp -o build/temp.linux-x86_64-cpython-311/layer1/ButMode.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer1/Ortho.cpp:783:6: warning: ‘void OrthoKeyCmmd(PyMOLGlobals*, unsigned char)’ defined but not used [-Wunused-function]
783 | void OrthoKeyCmmd(PyMOLGlobals * G, unsigned char k)
| ^~~~~~~~~~~~
In file included from /usr/include/string.h:535,
from /usr/include/python3.11/Python.h:26,
from layer0/os_python.h:34,
from layer1/Ortho.cpp:24:
In function ‘strcat’,
inlined from ‘OrthoSpecial(PyMOLGlobals*, int, int, int, int)’ at layer1/Ortho.cpp:332:13:
/usr/include/bits/string_fortified.h:130:33: warning: ‘__strcat_chk’ accessing 2199022993409 or more bytes at offsets [80, 261200] and [-2199022993328, 2199023516752] may overlap 1 byte at offset [80, 9223372036854775807] [-Wrestrict]
130 | return __builtin___strcat_chk (__dest, __src, __glibc_objsize (__dest));
| ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘strcat’,
inlined from ‘OrthoSpecial(PyMOLGlobals*, int, int, int, int)’ at layer1/Ortho.cpp:349:13:
/usr/include/bits/string_fortified.h:130:33: warning: ‘__strcat_chk’ accessing 2199022993409 or more bytes at offsets [80, 261200] and [-2199022993328, 2199023516752] may overlap 1 byte at offset [80, 9223372036854775807] [-Wrestrict]
130 | return __builtin___strcat_chk (__dest, __src, __glibc_objsize (__dest));
| ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer1/ButMode.cpp:22:
layer1/ButMode.cpp: In function ‘void ButModeFree(PyMOLGlobals*)’:
layer0/MemoryDebug.h:86:32: warning: deleting object of polymorphic class type ‘CButMode’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
86 | #define DeleteP(ptr) {if(ptr) {delete ptr;ptr=NULL;}}
layer1/ButMode.cpp:144:3: note: in expansion of macro ‘DeleteP’
144 | DeleteP(G->ButMode);
| ^~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/CGO.cpp -o build/temp.linux-x86_64-cpython-311/layer1/CGO.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/P.cpp -o build/temp.linux-x86_64-cpython-311/layer1/P.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer1/CGO.cpp: In function ‘void CheckAttributesForUsage(const CGO*, AttribDataDesc&, AttribDataDesc&, CGO*, bool&)’:
layer1/CGO.cpp:10842:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
10842 | for (auto idx = 0; idx < attrIdx; ++idx){
| ~~~~^~~~~~~~~
layer1/CGO.cpp: In function ‘void PopulateOpsIntoStructuresForConversion(std::map<int, int>&, std::map<int, std::map<int, AttribOp*> >&, AttribDataDesc&, AttribDataDesc&, int&, bool)’:
layer1/CGO.cpp:10920:37: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
10920 | if (attrOp->incr_vertices != vertsperpickinfo){
| ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
layer1/CGO.cpp: In function ‘CGO* CGOConvertToShader(const CGO*, AttribDataDesc&, AttribDataDesc&, int, GenericBuffer<34962>::buffer_layout, bool, int*, int, int)’:
layer1/CGO.cpp:11222:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<AttribDesc>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
11222 | for (auto idx = 0; idx < attrData.size(); ++idx){
| ~~~~^~~~~~~~~~~~~~~~~
layer1/CGO.cpp:11234:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<AttribDesc>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
11234 | for (auto idx = 0; idx < attrData.size(); ++idx){
| ~~~~^~~~~~~~~~~~~~~~~
layer1/CGO.cpp:11243:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
11243 | for (int nxt = 0; nxt < attribOp->incr_vertices; ++nxt){
| ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
layer1/P.cpp: In function ‘int WrapperObjectAssignSubScript(PyObject*, PyObject*, PyObject*)’:
layer1/P.cpp:825:26: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare]
825 | if (strlen(valstr) > ap->maxlen) {
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~
layer1/P.cpp:849:18: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare]
849 | if (valint == -1 && PyErr_Occurred())
| ~~~~~~~^~~~~
layer1/P.cpp: In function ‘int PAutoBlock(PyMOLGlobals*)’:
layer1/P.cpp:2288:27: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘long unsigned int’ [-Wsign-compare]
2288 | if (SavedThread[a].id == id) {
| ~~~~~~~~~~~~~~~~~~^~~~~
layer1/P.cpp: In function ‘int PIsGlutThread()’:
layer1/P.cpp:2314:39: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘long int’ [-Wsign-compare]
2314 | return (PyThread_get_thread_ident() == P_glut_thread_id);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
layer1/P.cpp: At global scope:
layer1/P.cpp:2422:13: warning: ‘void PLockAPIWhileBlocked(PyMOLGlobals*)’ defined but not used [-Wunused-function]
2422 | static void PLockAPIWhileBlocked(PyMOLGlobals * G)
| ^~~~~~~~~~~~~~~~~~~~
layer1/P.cpp:2411:13: warning: ‘void PUnlockAPIWhileBlocked(PyMOLGlobals*)’ defined but not used [-Wunused-function]
2411 | static void PUnlockAPIWhileBlocked(PyMOLGlobals * G)
| ^~~~~~~~~~~~~~~~~~~~~~
layer1/P.cpp: In function ‘PLabelAtomAlt(PyMOLGlobals*, AtomInfoType*, char const*, char const*, int)’:
layer1/P.cpp:322:12: warning: ‘strncpy’ specified bound 1024 equals destination size [-Wstringop-truncation]
322 | strncpy(label, origexpr, OrthoLineLength);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/PConv.cpp -o build/temp.linux-x86_64-cpython-311/layer1/PConv.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer1/PConv.cpp: In function ‘int PConvPyListToBitmask(PyObject*, int*, ov_size)’:
layer1/PConv.cpp:83:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘ov_size’ {aka ‘long unsigned int’} [-Wsign-compare]
83 | for(int i = 0; i < ll; i++)
| ~~^~~~
layer1/PConv.cpp: In function ‘PyObject* PConvLabPosVecToPyList(const std::vector<LabPosType>&)’:
layer1/PConv.cpp:1194:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<LabPosType>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1194 | for (int a = 0; a < vec.size(); a++) {
| ~~^~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/Picking.cpp -o build/temp.linux-x86_64-cpython-311/layer1/Picking.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/Pop.cpp -o build/temp.linux-x86_64-cpython-311/layer1/Pop.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In file included from layer1/Pop.cpp:22:
layer1/Pop.cpp: In function ‘void PopFree(PyMOLGlobals*)’:
layer0/MemoryDebug.h:86:32: warning: deleting object of polymorphic class type ‘CPop’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
86 | #define DeleteP(ptr) {if(ptr) {delete ptr;ptr=NULL;}}
layer1/Pop.cpp:54:3: note: in expansion of macro ‘DeleteP’
54 | DeleteP(G->Pop);
| ^~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/PyMOLObject.cpp -o build/temp.linux-x86_64-cpython-311/layer1/PyMOLObject.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/Ray.cpp -o build/temp.linux-x86_64-cpython-311/layer1/Ray.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer1/Ray.cpp: In function ‘void RayRender(CRay*, unsigned int*, double, float, int, unsigned int*)’:
layer1/Ray.cpp:6065:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
6065 | if(x_stop > width)
| ~~~~~~~^~~~~~~
layer1/Ray.cpp:6067:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
6067 | if(y_stop > height)
| ~~~~~~~^~~~~~~~
layer1/Ray.cpp:6148:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
6148 | for(y = 0; y < height; y++)
| ~~^~~~~~~~
layer1/Ray.cpp:6149:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
6149 | for(x = 0; x < width; x++) {
| ~~^~~~~~~
layer1/Ray.cpp:6160:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
6160 | if(x < (width - 1)) {
| ~~^~~~~~~~~~~~~
layer1/Ray.cpp:6171:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
6171 | if(y < (height - 1)) {
| ~~^~~~~~~~~~~~~~
layer1/Ray.cpp:6232:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
6232 | for(y = 0; y < height; y++)
| ~~^~~~~~~~
layer1/Ray.cpp:6233:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
6233 | for(x = 0; x < width; x++) {
| ~~^~~~~~~
layer1/Ray.cpp:6243:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
6243 | if(x < (width - 1)) {
| ~~^~~~~~~~~~~~~
layer1/Ray.cpp:6255:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
6255 | if(y < (height - 1)) {
| ~~^~~~~~~~~~~~~~
layer1/Ray.cpp:6306:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
6306 | for(y = 0; y < height; y++){
| ~~^~~~~~~~
layer1/Ray.cpp:6326:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
6326 | for(x = 0; x < width; x++) {
| ~~^~~~~~~
layer1/Ray.cpp:6345:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
6345 | if(x < (width - 1)) {
| ~~^~~~~~~~~~~~~
layer1/Ray.cpp:6359:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
6359 | if(y < (height - 1)) {
| ~~^~~~~~~~~~~~~~
layer1/Ray.cpp:6373:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
6373 | if(x && (y < (height - 1))) {
| ~~^~~~~~~~~~~~~~
layer1/Ray.cpp:6380:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
6380 | if(y && (x < (width - 1))) {
| ~~^~~~~~~~~~~~~
layer1/Ray.cpp:6387:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
6387 | if((y < (height - 1)) && (x < (width - 1))) {
| ~~^~~~~~~~~~~~~~
layer1/Ray.cpp:6387:47: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
6387 | if((y < (height - 1)) && (x < (width - 1))) {
| ~~^~~~~~~~~~~~~
layer1/Ray.cpp:6543:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
6543 | for(y = 0; y < height; y++) {
| ~~^~~~~~~~
layer1/Ray.cpp:6544:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
6544 | for(x = 0; x < width; x++) {
| ~~^~~~~~~
layer1/Ray.cpp: In function ‘RayRenderVRML2(_CRay*, int, int, char**, float, float, float, float, float)’:
layer1/Ray.cpp:1535:20: warning: ‘%s’ directive writing up to 1023 bytes into a region of size between 0 and 914 [-Wformat-overflow=]
1535 | "%s"
| ^~
......
1540 | vert2[2] - mid[2], axis[0], axis[1], axis[2], angle, geometry);
| ~~~~~~~~
layer1/Ray.cpp:1530:18: note: ‘sprintf’ output between 116 and 3302 bytes into a destination of size 1024
1530 | sprintf(buffer,
| ~~~~~~~^~~~~~~~
1531 | "Transform {\n"
| ~~~~~~~~~~~~~~~
1532 | " translation %8.6f %8.6f %8.6f\n"
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1533 | " rotation %8.6f %8.6f %8.6f %8.6f\n"
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1534 | " children [\n"
| ~~~~~~~~~~~~~~~
1535 | "%s"
| ~~~~
1536 | " ]\n"
| ~~~~~~
1537 | "}\n",
| ~~~~~~
1538 | vert2[0] - mid[0],
| ~~~~~~~~~~~~~~~~~~
1539 | vert2[1] - mid[1],
| ~~~~~~~~~~~~~~~~~~
1540 | vert2[2] - mid[2], axis[0], axis[1], axis[2], angle, geometry);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer1/Ray.cpp: In member function ‘_CRay::triangle3fv(float const*, float const*, float const*, float const*, float const*, float const*, float const*, float const*, float const*)’:
layer1/Ray.cpp:7312:36: warning: ‘MEM[(float *)&nx]’ may be used uninitialized [-Wmaybe-uninitialized]
7312 | float n0[3] = { 0.f, 0.f, 1.f }, nx[3], s1[3], s2[3], s3[3];
| ^~
layer1/Ray.cpp:7312:36: warning: ‘MEM[(float *)&nx + 4B]’ may be used uninitialized [-Wmaybe-uninitialized]
layer1/Ray.cpp: In function ‘RayTraceThread(_CRayThreadInfo*)’:
layer1/Ray.cpp:3606:39: warning: ‘hl’ may be used uninitialized [-Wmaybe-uninitialized]
3606 | compute_background_for_pixel(bkrd_uc, isOutsideInY,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
3607 | bg_image_mode, bg_image_tilesize, bg_rgb, bg_image_linear,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
3608 | (unsigned char*) T->bkrd_data, T->bgWidth, T->bgHeight,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
3609 | x, wr, hl, hpixelx, orig_opaque_back );
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer1/Ray.cpp:3269:9: note: ‘hl’ was declared here
3269 | float hl;
| ^~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/Rep.cpp -o build/temp.linux-x86_64-cpython-311/layer1/Rep.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/Scene.cpp -o build/temp.linux-x86_64-cpython-311/layer1/Scene.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer1/Scene.cpp: In function ‘int SceneViewEqual(float*, float*)’:
layer1/Scene.cpp:127:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const std::size_t’ {aka ‘const long unsigned int’} [-Wsign-compare]
127 | for(i = 0; i < cSceneViewSize; i++) {
| ~~^~~~~~~~~~~~~~~~
layer1/Scene.cpp: In function ‘void SceneFree(PyMOLGlobals*)’:
layer1/Scene.cpp:4071:3: warning: deleting object of polymorphic class type ‘CScene’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
4071 | delete G->Scene;
| ^~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/COLLADA.cpp -o build/temp.linux-x86_64-cpython-311/layer1/COLLADA.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/Character.cpp -o build/temp.linux-x86_64-cpython-311/layer1/Character.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/Color.cpp -o build/temp.linux-x86_64-cpython-311/layer1/Color.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/SceneMouse.cpp -o build/temp.linux-x86_64-cpython-311/layer1/SceneMouse.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer1/Color.cpp: In function ‘ObjectGadgetRamp* ColorGetRamp(PyMOLGlobals*, int)’:
layer1/Color.cpp:180:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ExtRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
180 | if (index < I->Ext.size()) {
| ~~~~~~^~~~~~~~~~~~~~~
layer1/Color.cpp: In function ‘int ColorExtFromPyList(PyMOLGlobals*, PyObject*, int)’:
layer1/Color.cpp:501:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
501 | for (int a = 0; a < n_ext; ++a) {
| ~~^~~~~~~
In file included from /usr/include/c++/13/cassert:44,
from /usr/include/glm/detail/setup.hpp:3,
from /usr/include/glm/detail/qualifier.hpp:3,
from /usr/include/glm/detail/type_vec2.hpp:6,
from /usr/include/glm/ext/vector_bool2.hpp:5,
from /usr/include/glm/vec2.hpp:5,
from layer0/GenericBuffer.h:12,
from layer0/ShaderMgr.h:24,
from layer1/Scene.h:29,
from layer3/Executive.h:35,
from layer1/Color.cpp:31:
layer1/Color.cpp:515:18: warning: comparison of integer expressions of different signedness: ‘const int’ and ‘std::vector<ExtRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
515 | assert(a_new <= I->Ext.size());
| ~~~~~~^~~~~~~~~~~~~~~~
layer1/Color.cpp:518:15: warning: comparison of integer expressions of different signedness: ‘const int’ and ‘std::vector<ExtRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
518 | if (a_new == I->Ext.size()) {
| ~~~~~~^~~~~~~~~~~~~~~~
layer1/Color.cpp: In function ‘int ColorFromPyList(PyMOLGlobals*, PyObject*, int)’:
layer1/Color.cpp:569:44: warning: comparison of integer expressions of different signedness: ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
569 | if (partial_restore && I->Color.size() > index) {
| ~~~~~~~~~~~~~~~~^~~~~~~
layer1/Color.cpp:575:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
575 | if (index >= I->Color.size()) {
| ~~~~~~^~~~~~~~~~~~~~~~~~
layer1/Color.cpp:576:30: warning: comparison of integer expressions of different signedness: ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
576 | assert(I->Color.size() == index);
| ~~~~~~~~~~~~~~~~^~~~~~~~
layer1/Color.cpp: In function ‘int ColorGetIndex(PyMOLGlobals*, const char*)’:
layer1/Color.cpp:683:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
683 | if((i < I->Color.size()) && (i >= 0))
| ~~^~~~~~~~~~~~~~~~~
layer1/Color.cpp: In function ‘const char* ColorGetName(PyMOLGlobals*, int)’:
layer1/Color.cpp:764:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
764 | if((index >= 0) && (index < I->Color.size())) {
| ~~~~~~^~~~~~~~~~~~~~~~~
layer1/Color.cpp:776:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ExtRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
776 | if (a < I->Ext.size()) {
| ~~^~~~~~~~~~~~~~~
layer1/Color.cpp: In function ‘int ColorGetStatus(PyMOLGlobals*, int)’:
layer1/Color.cpp:792:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
792 | if((index >= 0) && (index < I->Color.size())) {
| ~~~~~~^~~~~~~~~~~~~~~~~
layer1/Color.cpp: In function ‘void ColorReset(PyMOLGlobals*)’:
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1026:3: note: in expansion of macro ‘reg_named_color’
1026 | reg_named_color("white", 1.F, 1.F, 1.F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1027:3: note: in expansion of macro ‘reg_named_color’
1027 | reg_named_color("black", 0.F, 0.F, 0.F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1028:3: note: in expansion of macro ‘reg_named_color’
1028 | reg_named_color("blue", 0.F, 0.F, 1.F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1029:3: note: in expansion of macro ‘reg_named_color’
1029 | reg_named_color("green", 0.F, 1.F, 0.F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1030:3: note: in expansion of macro ‘reg_named_color’
1030 | reg_named_color("red", 1.F, 0.F, 0.F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1031:3: note: in expansion of macro ‘reg_named_color’
1031 | reg_named_color("cyan", 0.F, 1.F, 1.F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1032:3: note: in expansion of macro ‘reg_named_color’
1032 | reg_named_color("yellow", 1.F, 1.F, 0.F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1033:3: note: in expansion of macro ‘reg_named_color’
1033 | reg_named_color("dash", 1.F, 1.F, 0.F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1034:3: note: in expansion of macro ‘reg_named_color’
1034 | reg_named_color("magenta", 1.F, 0.F, 1.F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1035:3: note: in expansion of macro ‘reg_named_color’
1035 | reg_named_color("salmon", 1.F, 0.6F, 0.6F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1036:3: note: in expansion of macro ‘reg_named_color’
1036 | reg_named_color("lime", 0.5F, 1.F, 0.5F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1037:3: note: in expansion of macro ‘reg_named_color’
1037 | reg_named_color("slate", 0.5F, 0.5F, 1.F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1038:3: note: in expansion of macro ‘reg_named_color’
1038 | reg_named_color("hotpink", 1.F, 0.F, 0.5F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1039:3: note: in expansion of macro ‘reg_named_color’
1039 | reg_named_color("orange", 1.F, 0.5F, 0.F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1040:3: note: in expansion of macro ‘reg_named_color’
1040 | reg_named_color("chartreuse", 0.5F, 1.F, 0.F); /* AKA puke green */
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1041:3: note: in expansion of macro ‘reg_named_color’
1041 | reg_named_color("limegreen", 0.F, 1.F, 0.5F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1042:3: note: in expansion of macro ‘reg_named_color’
1042 | reg_named_color("purpleblue", 0.5F, 0.F, 1.F); /* legacy name */
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1043:3: note: in expansion of macro ‘reg_named_color’
1043 | reg_named_color("marine", 0.F, 0.5F, 1.F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1044:3: note: in expansion of macro ‘reg_named_color’
1044 | reg_named_color("olive", 0.77F, 0.7F, 0.F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1045:3: note: in expansion of macro ‘reg_named_color’
1045 | reg_named_color("purple", 0.75F, 0.F, 0.75F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1046:3: note: in expansion of macro ‘reg_named_color’
1046 | reg_named_color("teal", 0.F, 0.75F, 0.75F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1047:3: note: in expansion of macro ‘reg_named_color’
1047 | reg_named_color("ruby", 0.6F, 0.2F, 0.2F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1048:3: note: in expansion of macro ‘reg_named_color’
1048 | reg_named_color("forest", 0.2F, 0.6F, 0.2F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1049:3: note: in expansion of macro ‘reg_named_color’
1049 | reg_named_color("deepblue", 0.25F, 0.25F, 0.65F); /* was "deep" */
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1050:3: note: in expansion of macro ‘reg_named_color’
1050 | reg_named_color("grey", 0.5F, 0.5F, 0.5F); /* english spelling */
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1051:3: note: in expansion of macro ‘reg_named_color’
1051 | reg_named_color("gray", 0.5F, 0.5F, 0.5F); /* american spelling */
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1052:3: note: in expansion of macro ‘reg_named_color’
1052 | reg_named_color("carbon", 0.2F, 1.F, 0.2F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1053:3: note: in expansion of macro ‘reg_named_color’
1053 | reg_named_color("nitrogen", 0.2F, 0.2F, 1.F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1054:3: note: in expansion of macro ‘reg_named_color’
1054 | reg_named_color("oxygen", 1.F, 0.3F, 0.3F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1055:3: note: in expansion of macro ‘reg_named_color’
1055 | reg_named_color("hydrogen", 0.9F, 0.9F, 0.9F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1056:3: note: in expansion of macro ‘reg_named_color’
1056 | reg_named_color("brightorange", 1.F, 0.7F, 0.2F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1057:3: note: in expansion of macro ‘reg_named_color’
1057 | reg_named_color("sulfur", 0.9F, 0.775F, 0.25F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1058:3: note: in expansion of macro ‘reg_named_color’
1058 | reg_named_color("tv_red", 1.F, 0.2F, 0.2F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1059:3: note: in expansion of macro ‘reg_named_color’
1059 | reg_named_color("tv_green", 0.2F, 1.F, 0.2F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1060:3: note: in expansion of macro ‘reg_named_color’
1060 | reg_named_color("tv_blue", 0.3F, 0.3F, 1.F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1061:3: note: in expansion of macro ‘reg_named_color’
1061 | reg_named_color("tv_yellow", 1.F, 1.F, 0.2F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1062:3: note: in expansion of macro ‘reg_named_color’
1062 | reg_named_color("yelloworange", 1.F, 0.87F, 0.37F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1063:3: note: in expansion of macro ‘reg_named_color’
1063 | reg_named_color("tv_orange", 1.F, 0.55F, 0.15F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1064:3: note: in expansion of macro ‘reg_named_color’
1064 | reg_named_color("br0", 0.1F, 0.1F, 1.F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1065:3: note: in expansion of macro ‘reg_named_color’
1065 | reg_named_color("br1", 0.2F, 0.1F, 0.9F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1066:3: note: in expansion of macro ‘reg_named_color’
1066 | reg_named_color("br2", 0.3F, 0.1F, 0.8F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1067:3: note: in expansion of macro ‘reg_named_color’
1067 | reg_named_color("br3", 0.4F, 0.1F, 0.7F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1068:3: note: in expansion of macro ‘reg_named_color’
1068 | reg_named_color("br4", 0.5F, 0.1F, 0.6F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1069:3: note: in expansion of macro ‘reg_named_color’
1069 | reg_named_color("br5", 0.6F, 0.1F, 0.5F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1070:3: note: in expansion of macro ‘reg_named_color’
1070 | reg_named_color("br6", 0.7F, 0.1F, 0.4F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1071:3: note: in expansion of macro ‘reg_named_color’
1071 | reg_named_color("br7", 0.8F, 0.1F, 0.3F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1072:3: note: in expansion of macro ‘reg_named_color’
1072 | reg_named_color("br8", 0.9F, 0.1F, 0.2F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1073:3: note: in expansion of macro ‘reg_named_color’
1073 | reg_named_color("br9", 1.F, 0.1F, 0.1F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1074:3: note: in expansion of macro ‘reg_named_color’
1074 | reg_named_color("pink", 1.F, 0.65F, 0.85F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1075:3: note: in expansion of macro ‘reg_named_color’
1075 | reg_named_color("firebrick", 0.698F, 0.13F, 0.13F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1076:3: note: in expansion of macro ‘reg_named_color’
1076 | reg_named_color("chocolate", 0.555F, 0.222F, 0.111F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1077:3: note: in expansion of macro ‘reg_named_color’
1077 | reg_named_color("brown", 0.65F, 0.32F, 0.17F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1078:3: note: in expansion of macro ‘reg_named_color’
1078 | reg_named_color("wheat", 0.99F, 0.82F, 0.65F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1079:3: note: in expansion of macro ‘reg_named_color’
1079 | reg_named_color("violet", 1.F, 0.5F, 1.F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1088:5: note: in expansion of macro ‘reg_named_color’
1088 | reg_named_color(name, a / 99.F, a / 99.F, a / 99.F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1091:3: note: in expansion of macro ‘reg_named_color’
1091 | reg_named_color("lightmagenta", 1.F, 0.2F, 0.8F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1105:5: note: in expansion of macro ‘reg_named_color’
1105 | reg_named_color(name,
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1121:5: note: in expansion of macro ‘reg_named_color’
1121 | reg_named_color(name,
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1137:5: note: in expansion of macro ‘reg_named_color’
1137 | reg_named_color(name,
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1155:5: note: in expansion of macro ‘reg_named_color’
1155 | reg_named_color(name,
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1161:3: note: in expansion of macro ‘reg_named_color’
1161 | reg_named_color("density", 0.1F, 0.1F, 0.6F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1168:5: note: in expansion of macro ‘reg_named_color’
1168 | reg_named_color(name, a / 99.F, a / 99.F, a / 99.F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1183:5: note: in expansion of macro ‘reg_named_color’
1183 | reg_named_color(name,
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1189:3: note: in expansion of macro ‘reg_named_color’
1189 | reg_named_color("paleyellow", 1.F, 1.F, 0.5F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1190:3: note: in expansion of macro ‘reg_named_color’
1190 | reg_named_color("aquamarine", 0.5F, 1.F, 1.F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1191:3: note: in expansion of macro ‘reg_named_color’
1191 | reg_named_color("deepsalmon", 1.F, 0.5F, 0.5F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1192:3: note: in expansion of macro ‘reg_named_color’
1192 | reg_named_color("palegreen", 0.65F, 0.9F, 0.65F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1193:3: note: in expansion of macro ‘reg_named_color’
1193 | reg_named_color("deepolive", 0.6F, 0.6F, 0.1F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1194:3: note: in expansion of macro ‘reg_named_color’
1194 | reg_named_color("deeppurple", 0.6F, 0.1F, 0.6F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1195:3: note: in expansion of macro ‘reg_named_color’
1195 | reg_named_color("deepteal", 0.1F, 0.6F, 0.6F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1196:3: note: in expansion of macro ‘reg_named_color’
1196 | reg_named_color("lightblue", 0.75F, 0.75F, 1.F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1197:3: note: in expansion of macro ‘reg_named_color’
1197 | reg_named_color("lightorange", 1.F, 0.8F, 0.5F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1198:3: note: in expansion of macro ‘reg_named_color’
1198 | reg_named_color("palecyan", 0.8F, 1.F, 1.F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1199:3: note: in expansion of macro ‘reg_named_color’
1199 | reg_named_color("lightteal", 0.4F, 0.7F, 0.7F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1200:3: note: in expansion of macro ‘reg_named_color’
1200 | reg_named_color("splitpea", 0.52F, 0.75F, 0.F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1201:3: note: in expansion of macro ‘reg_named_color’
1201 | reg_named_color("raspberry", 0.7F, 0.3F, 0.4F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1202:3: note: in expansion of macro ‘reg_named_color’
1202 | reg_named_color("sand", 0.72F, 0.55F, 0.3F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1203:3: note: in expansion of macro ‘reg_named_color’
1203 | reg_named_color("smudge", 0.55F, 0.7F, 0.4F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1204:3: note: in expansion of macro ‘reg_named_color’
1204 | reg_named_color("violetpurple", 0.55F, 0.25F, 0.6F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1205:3: note: in expansion of macro ‘reg_named_color’
1205 | reg_named_color("dirtyviolet", 0.7F, 0.5F, 0.5F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1208:3: note: in expansion of macro ‘reg_named_color’
1208 | reg_named_color("_deepsalmon", 1.F, 0.42F, 0.42F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1210:3: note: in expansion of macro ‘reg_named_color’
1210 | reg_named_color("lightpink", 1.F, 0.75F, 0.87F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1211:3: note: in expansion of macro ‘reg_named_color’
1211 | reg_named_color("greencyan", 0.25F, 1.F, 0.75F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1212:3: note: in expansion of macro ‘reg_named_color’
1212 | reg_named_color("limon", 0.75F, 1.F, 0.25F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1213:3: note: in expansion of macro ‘reg_named_color’
1213 | reg_named_color("skyblue", 0.2F, 0.5F, 0.8F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1214:3: note: in expansion of macro ‘reg_named_color’
1214 | reg_named_color("bluewhite", 0.85F, 0.85F, 1.F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1215:3: note: in expansion of macro ‘reg_named_color’
1215 | reg_named_color("warmpink", 0.85F, 0.2F, 0.5F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1216:3: note: in expansion of macro ‘reg_named_color’
1216 | reg_named_color("darksalmon", 0.73F, 0.55F, 0.52F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1217:3: note: in expansion of macro ‘reg_named_color’
1217 | reg_named_color("helium", 0.850980392F, 1.F, 1.F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1218:3: note: in expansion of macro ‘reg_named_color’
1218 | reg_named_color("lithium", 0.8F, 0.501960784F, 1.F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1219:3: note: in expansion of macro ‘reg_named_color’
1219 | reg_named_color("beryllium", 0.760784314F, 1.F, 0.F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1220:3: note: in expansion of macro ‘reg_named_color’
1220 | reg_named_color("boron", 1.F, 0.709803922F, 0.709803922F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1221:3: note: in expansion of macro ‘reg_named_color’
1221 | reg_named_color("fluorine", 0.701960784F, 1.F, 1.F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1222:3: note: in expansion of macro ‘reg_named_color’
1222 | reg_named_color("neon", 0.701960784F, 0.890196078F, 0.960784314F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1223:3: note: in expansion of macro ‘reg_named_color’
1223 | reg_named_color("sodium", 0.670588235F, 0.360784314F, 0.949019608F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1224:3: note: in expansion of macro ‘reg_named_color’
1224 | reg_named_color("magnesium", 0.541176471F, 1.F, 0.F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1225:3: note: in expansion of macro ‘reg_named_color’
1225 | reg_named_color("aluminum", 0.749019608F, 0.650980392F, 0.650980392F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1226:3: note: in expansion of macro ‘reg_named_color’
1226 | reg_named_color("silicon", 0.941176471F, 0.784313725F, 0.62745098F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1227:3: note: in expansion of macro ‘reg_named_color’
1227 | reg_named_color("phosphorus", 1.F, 0.501960784F, 0.F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1228:3: note: in expansion of macro ‘reg_named_color’
1228 | reg_named_color("chlorine", 0.121568627F, 0.941176471F, 0.121568627F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1229:3: note: in expansion of macro ‘reg_named_color’
1229 | reg_named_color("argon", 0.501960784F, 0.819607843F, 0.890196078F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1230:3: note: in expansion of macro ‘reg_named_color’
1230 | reg_named_color("potassium", 0.560784314F, 0.250980392F, 0.831372549F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1231:3: note: in expansion of macro ‘reg_named_color’
1231 | reg_named_color("calcium", 0.239215686F, 1.F, 0.F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1232:3: note: in expansion of macro ‘reg_named_color’
1232 | reg_named_color("scandium", 0.901960784F, 0.901960784F, 0.901960784F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1233:3: note: in expansion of macro ‘reg_named_color’
1233 | reg_named_color("titanium", 0.749019608F, 0.760784314F, 0.780392157F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1234:3: note: in expansion of macro ‘reg_named_color’
1234 | reg_named_color("vanadium", 0.650980392F, 0.650980392F, 0.670588235F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1235:3: note: in expansion of macro ‘reg_named_color’
1235 | reg_named_color("chromium", 0.541176471F, 0.6F, 0.780392157F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1236:3: note: in expansion of macro ‘reg_named_color’
1236 | reg_named_color("manganese", 0.611764706F, 0.478431373F, 0.780392157F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1237:3: note: in expansion of macro ‘reg_named_color’
1237 | reg_named_color("iron", 0.878431373F, 0.4F, 0.2F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1238:3: note: in expansion of macro ‘reg_named_color’
1238 | reg_named_color("cobalt", 0.941176471F, 0.564705882F, 0.62745098F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1239:3: note: in expansion of macro ‘reg_named_color’
1239 | reg_named_color("nickel", 0.31372549F, 0.815686275F, 0.31372549F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1240:3: note: in expansion of macro ‘reg_named_color’
1240 | reg_named_color("copper", 0.784313725F, 0.501960784F, 0.2F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1241:3: note: in expansion of macro ‘reg_named_color’
1241 | reg_named_color("zinc", 0.490196078F, 0.501960784F, 0.690196078F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1242:3: note: in expansion of macro ‘reg_named_color’
1242 | reg_named_color("gallium", 0.760784314F, 0.560784314F, 0.560784314F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1243:3: note: in expansion of macro ‘reg_named_color’
1243 | reg_named_color("germanium", 0.4F, 0.560784314F, 0.560784314F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1244:3: note: in expansion of macro ‘reg_named_color’
1244 | reg_named_color("arsenic", 0.741176471F, 0.501960784F, 0.890196078F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1245:3: note: in expansion of macro ‘reg_named_color’
1245 | reg_named_color("selenium", 1.F, 0.631372549F, 0.F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1246:3: note: in expansion of macro ‘reg_named_color’
1246 | reg_named_color("bromine", 0.650980392F, 0.160784314F, 0.160784314F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1247:3: note: in expansion of macro ‘reg_named_color’
1247 | reg_named_color("krypton", 0.360784314F, 0.721568627F, 0.819607843F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1248:3: note: in expansion of macro ‘reg_named_color’
1248 | reg_named_color("rubidium", 0.439215686F, 0.180392157F, 0.690196078F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1249:3: note: in expansion of macro ‘reg_named_color’
1249 | reg_named_color("strontium", 0.F, 1.F, 0.F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1250:3: note: in expansion of macro ‘reg_named_color’
1250 | reg_named_color("yttrium", 0.580392157F, 1.F, 1.F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1251:3: note: in expansion of macro ‘reg_named_color’
1251 | reg_named_color("zirconium", 0.580392157F, 0.878431373F, 0.878431373F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1252:3: note: in expansion of macro ‘reg_named_color’
1252 | reg_named_color("niobium", 0.450980392F, 0.760784314F, 0.788235294F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1253:3: note: in expansion of macro ‘reg_named_color’
1253 | reg_named_color("molybdenum", 0.329411765F, 0.709803922F, 0.709803922F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1254:3: note: in expansion of macro ‘reg_named_color’
1254 | reg_named_color("technetium", 0.231372549F, 0.619607843F, 0.619607843F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1255:3: note: in expansion of macro ‘reg_named_color’
1255 | reg_named_color("ruthenium", 0.141176471F, 0.560784314F, 0.560784314F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1256:3: note: in expansion of macro ‘reg_named_color’
1256 | reg_named_color("rhodium", 0.039215686F, 0.490196078F, 0.549019608F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1257:3: note: in expansion of macro ‘reg_named_color’
1257 | reg_named_color("palladium", 0.F, 0.411764706F, 0.521568627F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1258:3: note: in expansion of macro ‘reg_named_color’
1258 | reg_named_color("silver", 0.752941176F, 0.752941176F, 0.752941176F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1259:3: note: in expansion of macro ‘reg_named_color’
1259 | reg_named_color("cadmium", 1.F, 0.850980392F, 0.560784314F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1260:3: note: in expansion of macro ‘reg_named_color’
1260 | reg_named_color("indium", 0.650980392F, 0.458823529F, 0.450980392F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1261:3: note: in expansion of macro ‘reg_named_color’
1261 | reg_named_color("tin", 0.4F, 0.501960784F, 0.501960784F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1262:3: note: in expansion of macro ‘reg_named_color’
1262 | reg_named_color("antimony", 0.619607843F, 0.388235294F, 0.709803922F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1263:3: note: in expansion of macro ‘reg_named_color’
1263 | reg_named_color("tellurium", 0.831372549F, 0.478431373F, 0.F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1264:3: note: in expansion of macro ‘reg_named_color’
1264 | reg_named_color("iodine", 0.580392157F, 0.F, 0.580392157F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1265:3: note: in expansion of macro ‘reg_named_color’
1265 | reg_named_color("xenon", 0.258823529F, 0.619607843F, 0.690196078F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1266:3: note: in expansion of macro ‘reg_named_color’
1266 | reg_named_color("cesium", 0.341176471F, 0.090196078F, 0.560784314F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1267:3: note: in expansion of macro ‘reg_named_color’
1267 | reg_named_color("barium", 0.F, 0.788235294F, 0.F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1268:3: note: in expansion of macro ‘reg_named_color’
1268 | reg_named_color("lanthanum", 0.439215686F, 0.831372549F, 1.F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1269:3: note: in expansion of macro ‘reg_named_color’
1269 | reg_named_color("cerium", 1.F, 1.F, 0.780392157F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1270:3: note: in expansion of macro ‘reg_named_color’
1270 | reg_named_color("praseodymium", 0.850980392F, 1.F, 0.780392157F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1271:3: note: in expansion of macro ‘reg_named_color’
1271 | reg_named_color("neodymium", 0.780392157F, 1.F, 0.780392157F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1272:3: note: in expansion of macro ‘reg_named_color’
1272 | reg_named_color("promethium", 0.639215686F, 1.F, 0.780392157F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1273:3: note: in expansion of macro ‘reg_named_color’
1273 | reg_named_color("samarium", 0.560784314F, 1.F, 0.780392157F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1274:3: note: in expansion of macro ‘reg_named_color’
1274 | reg_named_color("europium", 0.380392157F, 1.F, 0.780392157F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1275:3: note: in expansion of macro ‘reg_named_color’
1275 | reg_named_color("gadolinium", 0.270588235F, 1.F, 0.780392157F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1276:3: note: in expansion of macro ‘reg_named_color’
1276 | reg_named_color("terbium", 0.188235294F, 1.F, 0.780392157F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1277:3: note: in expansion of macro ‘reg_named_color’
1277 | reg_named_color("dysprosium", 0.121568627F, 1.F, 0.780392157F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1278:3: note: in expansion of macro ‘reg_named_color’
1278 | reg_named_color("holmium", 0.F, 1.F, 0.611764706F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1279:3: note: in expansion of macro ‘reg_named_color’
1279 | reg_named_color("erbium", 0.F, 0.901960784F, 0.458823529F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1280:3: note: in expansion of macro ‘reg_named_color’
1280 | reg_named_color("thulium", 0.F, 0.831372549F, 0.321568627F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1281:3: note: in expansion of macro ‘reg_named_color’
1281 | reg_named_color("ytterbium", 0.F, 0.749019608F, 0.219607843F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1282:3: note: in expansion of macro ‘reg_named_color’
1282 | reg_named_color("lutetium", 0.F, 0.670588235F, 0.141176471F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1283:3: note: in expansion of macro ‘reg_named_color’
1283 | reg_named_color("hafnium", 0.301960784F, 0.760784314F, 1.F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1284:3: note: in expansion of macro ‘reg_named_color’
1284 | reg_named_color("tantalum", 0.301960784F, 0.650980392F, 1.F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1285:3: note: in expansion of macro ‘reg_named_color’
1285 | reg_named_color("tungsten", 0.129411765F, 0.580392157F, 0.839215686F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1286:3: note: in expansion of macro ‘reg_named_color’
1286 | reg_named_color("rhenium", 0.149019608F, 0.490196078F, 0.670588235F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1287:3: note: in expansion of macro ‘reg_named_color’
1287 | reg_named_color("osmium", 0.149019608F, 0.4F, 0.588235294F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1288:3: note: in expansion of macro ‘reg_named_color’
1288 | reg_named_color("iridium", 0.090196078F, 0.329411765F, 0.529411765F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1289:3: note: in expansion of macro ‘reg_named_color’
1289 | reg_named_color("platinum", 0.815686275F, 0.815686275F, 0.878431373F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1290:3: note: in expansion of macro ‘reg_named_color’
1290 | reg_named_color("gold", 1.F, 0.819607843F, 0.137254902F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1291:3: note: in expansion of macro ‘reg_named_color’
1291 | reg_named_color("mercury", 0.721568627F, 0.721568627F, 0.815686275F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1292:3: note: in expansion of macro ‘reg_named_color’
1292 | reg_named_color("thallium", 0.650980392F, 0.329411765F, 0.301960784F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1293:3: note: in expansion of macro ‘reg_named_color’
1293 | reg_named_color("lead", 0.341176471F, 0.349019608F, 0.380392157F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1294:3: note: in expansion of macro ‘reg_named_color’
1294 | reg_named_color("bismuth", 0.619607843F, 0.309803922F, 0.709803922F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1295:3: note: in expansion of macro ‘reg_named_color’
1295 | reg_named_color("polonium", 0.670588235F, 0.360784314F, 0.F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1296:3: note: in expansion of macro ‘reg_named_color’
1296 | reg_named_color("astatine", 0.458823529F, 0.309803922F, 0.270588235F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1297:3: note: in expansion of macro ‘reg_named_color’
1297 | reg_named_color("radon", 0.258823529F, 0.509803922F, 0.588235294F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1298:3: note: in expansion of macro ‘reg_named_color’
1298 | reg_named_color("francium", 0.258823529F, 0.F, 0.4F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1299:3: note: in expansion of macro ‘reg_named_color’
1299 | reg_named_color("radium", 0.F, 0.490196078F, 0.F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1300:3: note: in expansion of macro ‘reg_named_color’
1300 | reg_named_color("actinium", 0.439215686F, 0.670588235F, 0.980392157F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1301:3: note: in expansion of macro ‘reg_named_color’
1301 | reg_named_color("thorium", 0.F, 0.729411765F, 1.F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1302:3: note: in expansion of macro ‘reg_named_color’
1302 | reg_named_color("protactinium", 0.F, 0.631372549F, 1.F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1303:3: note: in expansion of macro ‘reg_named_color’
1303 | reg_named_color("uranium", 0.F, 0.560784314F, 1.F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1304:3: note: in expansion of macro ‘reg_named_color’
1304 | reg_named_color("neptunium", 0.F, 0.501960784F, 1.F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1305:3: note: in expansion of macro ‘reg_named_color’
1305 | reg_named_color("plutonium", 0.F, 0.419607843F, 1.F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1306:3: note: in expansion of macro ‘reg_named_color’
1306 | reg_named_color("americium", 0.329411765F, 0.360784314F, 0.949019608F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1307:3: note: in expansion of macro ‘reg_named_color’
1307 | reg_named_color("curium", 0.470588235F, 0.360784314F, 0.890196078F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1308:3: note: in expansion of macro ‘reg_named_color’
1308 | reg_named_color("berkelium", 0.541176471F, 0.309803922F, 0.890196078F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1309:3: note: in expansion of macro ‘reg_named_color’
1309 | reg_named_color("californium", 0.631372549F, 0.211764706F, 0.831372549F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1310:3: note: in expansion of macro ‘reg_named_color’
1310 | reg_named_color("einsteinium", 0.701960784F, 0.121568627F, 0.831372549F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1311:3: note: in expansion of macro ‘reg_named_color’
1311 | reg_named_color("fermium", 0.701960784F, 0.121568627F, 0.729411765F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1312:3: note: in expansion of macro ‘reg_named_color’
1312 | reg_named_color("mendelevium", 0.701960784F, 0.050980392F, 0.650980392F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1313:3: note: in expansion of macro ‘reg_named_color’
1313 | reg_named_color("nobelium", 0.741176471F, 0.050980392F, 0.529411765F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1314:3: note: in expansion of macro ‘reg_named_color’
1314 | reg_named_color("lawrencium", 0.780392157F, 0.F, 0.4F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1315:3: note: in expansion of macro ‘reg_named_color’
1315 | reg_named_color("rutherfordium", 0.8F, 0.F, 0.349019608F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1316:3: note: in expansion of macro ‘reg_named_color’
1316 | reg_named_color("dubnium", 0.819607843F, 0.F, 0.309803922F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1317:3: note: in expansion of macro ‘reg_named_color’
1317 | reg_named_color("seaborgium", 0.850980392F, 0.F, 0.270588235F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1318:3: note: in expansion of macro ‘reg_named_color’
1318 | reg_named_color("bohrium", 0.878431373F, 0.F, 0.219607843F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1319:3: note: in expansion of macro ‘reg_named_color’
1319 | reg_named_color("hassium", 0.901960784F, 0.F, 0.180392157F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1320:3: note: in expansion of macro ‘reg_named_color’
1320 | reg_named_color("meitnerium", 0.921568627F, 0.F, 0.149019608F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1321:3: note: in expansion of macro ‘reg_named_color’
1321 | reg_named_color("deuterium", 0.9F, 0.9F, 0.9F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1322:3: note: in expansion of macro ‘reg_named_color’
1322 | reg_named_color("lonepair", 0.5F, 0.5F, 0.5F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1023 | assert(I->Idx[name] == Color.size() - 1); \
layer1/Color.cpp:1323:3: note: in expansion of macro ‘reg_named_color’
1323 | reg_named_color("pseudoatom", 0.9F, 0.9F, 0.9F);
| ^~~~~~~~~~~~~~~
layer1/Color.cpp: In function ‘void ColorUpdateFromLut(PyMOLGlobals*, int)’:
layer1/Color.cpp:1695:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1695 | for(i = 0; i < I->Color.size(); i++) {
| ~~^~~~~~~~~~~~~~~~~
layer1/Color.cpp:1699:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1699 | if(index < I->Color.size()) {
| ~~~~~~^~~~~~~~~~~~~~~~~
layer1/Color.cpp: In function ‘const float* ColorGet(PyMOLGlobals*, int)’:
layer1/Color.cpp:1808:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1808 | if((index >= 0) && (index < I->Color.size())) {
| ~~~~~~^~~~~~~~~~~~~~~~~
layer1/Color.cpp: In function ‘const float* ColorGetRaw(PyMOLGlobals*, int)’:
layer1/Color.cpp:1835:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1835 | if((index >= 0) && (index < I->Color.size())) {
| ~~~~~~^~~~~~~~~~~~~~~~~
layer1/Color.cpp: In function ‘int ColorGetEncoded(PyMOLGlobals*, int, float*)’:
layer1/Color.cpp:1853:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1853 | if((index >= 0) && (index < I->Color.size())) {
| ~~~~~~^~~~~~~~~~~~~~~~~
layer1/Color.cpp: In instantiation of ‘int findByCaseInsensitiveName(PyMOLGlobals*, const Sequence&, const char*) [with Sequence = std::vector<ExtRec>]’:
layer1/Color.cpp:304:35: required from here
layer1/Color.cpp:245:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ExtRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
245 | for (int a = 0; a < seq.size(); ++a) {
| ~~^~~~~~~~~~~~
layer1/Color.cpp: In instantiation of ‘int findByCaseInsensitiveName(PyMOLGlobals*, const Sequence&, const char*) [with Sequence = std::vector<ColorRec>]’:
layer1/Color.cpp:626:38: required from here
layer1/Color.cpp:245:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
layer1/Color.cpp: In instantiation of ‘int findByCaseInsensitivePrefix(PyMOLGlobals*, const Sequence&, const char*, int&) [with Sequence = std::vector<ColorRec>]’:
layer1/Color.cpp:741:42: required from here
layer1/Color.cpp:275:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
275 | for (int a = 0; a < seq.size(); ++a) {
| ~~^~~~~~~~~~~~
layer1/Color.cpp: In instantiation of ‘int findByCaseInsensitivePrefix(PyMOLGlobals*, const Sequence&, const char*, int&) [with Sequence = std::vector<ExtRec>]’:
layer1/Color.cpp:743:54: required from here
layer1/Color.cpp:275:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ExtRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
layer1/SceneMouse.cpp: In function ‘void SceneClickPickBond(PyMOLGlobals*, int, int, int, const NamedPicking&)’:
layer1/SceneMouse.cpp:513:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare]
513 | if (atIndex == LastPicked.src.index)
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
layer1/SceneMouse.cpp: In function ‘SceneClickTransformObject(PyMOLGlobals*, pymol::CObject*, NamedPicking const&, int, bool)’:
layer1/SceneMouse.cpp:455:32: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 237 [-Wformat-truncation=]
455 | " You clicked %s -> (%s)\n", buffer.c_str(), name ENDFB(G);
| ^~ ~~~~
In file included from /usr/include/stdio.h:906,
from /usr/include/c++/13/cstdio:42,
from /usr/include/c++/13/ext/string_conversions.h:45,
from /usr/include/c++/13/bits/basic_string.h:4072,
from /usr/include/c++/13/string:54,
from /usr/include/c++/13/bits/locale_classes.h:40,
from /usr/include/c++/13/bits/ios_base.h:41,
from /usr/include/c++/13/ios:44,
from /usr/include/c++/13/ostream:40,
from include/pymol/zstring_view.h:12,
from layer1/SceneMouse.h:4,
from layer1/SceneMouse.cpp:1:
In function ‘snprintf’,
inlined from ‘SceneClickTransformObject(PyMOLGlobals*, pymol::CObject*, NamedPicking const&, int, bool)’ at layer1/SceneMouse.cpp:454:11:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output 21 or more bytes (assuming 276) into a destination of size 255
54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
55 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
56 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/ScenePicking.cpp -o build/temp.linux-x86_64-cpython-311/layer1/ScenePicking.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In function ‘SceneRenderPickingMultiPick(PyMOLGlobals*, SceneUnitContext*, Multipick*, unsigned int)’,
inlined from ‘SceneRenderPicking(PyMOLGlobals*, int, int*, int, Picking*, int, int, Multipick*, SceneUnitContext*, unsigned int)’ at layer1/ScenePicking.cpp:314:32:
layer1/ScenePicking.cpp:249:7: warning: ‘previous.src.index’ may be used uninitialized [-Wmaybe-uninitialized]
249 | if (pik->src.index != previous.src.index ||
| ^~
layer1/ScenePicking.cpp: In function ‘SceneRenderPicking(PyMOLGlobals*, int, int*, int, Picking*, int, int, Multipick*, SceneUnitContext*, unsigned int)’:
layer1/ScenePicking.cpp:238:11: note: ‘previous.src.index’ was declared here
238 | Picking previous;
| ^~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/SceneRay.cpp -o build/temp.linux-x86_64-cpython-311/layer1/SceneRay.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/Control.cpp -o build/temp.linux-x86_64-cpython-311/layer1/Control.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In file included from layer0/vla.h:7,
from layer1/Symmetry.h:26,
from layer1/PyMOLObject.h:27,
from layer1/Scene.h:22,
from layer1/Control.cpp:25:
layer1/Control.cpp: In function ‘void ControlFree(PyMOLGlobals*)’:
layer0/MemoryDebug.h:86:32: warning: deleting object of polymorphic class type ‘CControl’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
86 | #define DeleteP(ptr) {if(ptr) {delete ptr;ptr=NULL;}}
layer1/Control.cpp:410:3: note: in expansion of macro ‘DeleteP’
410 | DeleteP(G->Control);
| ^~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/SceneRender.cpp -o build/temp.linux-x86_64-cpython-311/layer1/SceneRender.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/Extrude.cpp -o build/temp.linux-x86_64-cpython-311/layer1/Extrude.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/ScrollBar.cpp -o build/temp.linux-x86_64-cpython-311/layer1/ScrollBar.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer1/Extrude.cpp: In function ‘ExtrudeComputeTangents(CExtrude*)’:
layer1/Extrude.cpp:741:13: warning: ‘MEM <vector(2) float> [(float *)_63]’ may be used uninitialized [-Wmaybe-uninitialized]
741 | *(v1++) = *(v++); /* first segment */
| ^~~~~~
layer1/Extrude.cpp:743:13: warning: ‘MEM[(float *)_63 + 8B]’ may be used uninitialized [-Wmaybe-uninitialized]
743 | *(v1++) = *(v++);
| ^~~~~~
layer1/Extrude.cpp: In function ‘ExtrudeCGOSurfaceTube(CExtrude const*, CGO*, cCylCap, float const*, bool, int)’:
layer1/Extrude.cpp:948:37: warning: ‘start’ may be used uninitialized [-Wmaybe-uninitialized]
948 | if(color_override && (b > start) && (b < stop))
| ~~~^~~~~~~~
layer1/Extrude.cpp:875:7: note: ‘start’ was declared here
875 | int start, stop;
| ^~~~~
layer1/Extrude.cpp:948:46: warning: ‘stop’ may be used uninitialized [-Wmaybe-uninitialized]
948 | if(color_override && (b > start) && (b < stop))
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
layer1/Extrude.cpp:875:14: note: ‘stop’ was declared here
875 | int start, stop;
| ^~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/Font.cpp -o build/temp.linux-x86_64-cpython-311/layer1/Font.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/Seq.cpp -o build/temp.linux-x86_64-cpython-311/layer1/Seq.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/FontGLUT.cpp -o build/temp.linux-x86_64-cpython-311/layer1/FontGLUT.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer1/Seq.cpp: In function ‘int SeqFindRowCol(PyMOLGlobals*, int, int, int*, int*, int)’:
layer1/Seq.cpp:61:41: warning: comparison of integer expressions of different signedness: ‘int’ and ‘ov_size’ {aka ‘long unsigned int’} [-Wsign-compare]
61 | if((char_num >= 0) && (char_num < row->ext_len) && (row->char2col)) {
| ~~~~~~~~~^~~~~~~~~~~~~~
layer1/Seq.cpp: In member function ‘virtual void CSeq::reshape(int, int)’:
layer1/Seq.cpp:114:28: warning: comparison of integer expressions of different signedness: ‘ov_size’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
114 | if(I->Row[a].ext_len > I->Size)
layer1/Seq.cpp: In member function ‘virtual void CSeq::draw(CGO*)’:
layer1/Seq.cpp:392:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘ov_size’ {aka ‘long unsigned int’} [-Wsign-compare]
392 | if(max_len < row->ext_len)
| ~~~~~~~~^~~~~~~~~~~~~~
In file included from layer0/vla.h:7,
from layer1/Symmetry.h:26,
from layer1/PyMOLObject.h:27,
from layer1/Seq.h:21,
from layer1/Seq.cpp:22:
layer1/Seq.cpp: In function ‘void SeqFree(PyMOLGlobals*)’:
layer0/MemoryDebug.h:86:32: warning: deleting object of polymorphic class type ‘CSeq’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
86 | #define DeleteP(ptr) {if(ptr) {delete ptr;ptr=NULL;}}
layer1/Seq.cpp:731:3: note: in expansion of macro ‘DeleteP’
731 | DeleteP(G->Seq);
| ^~~~~~~
layer1/Seq.cpp: At global scope:
layer1/Seq.cpp:717:13: warning: ‘void SeqPurgeRowVLA(PyMOLGlobals*)’ defined but not used [-Wunused-function]
717 | static void SeqPurgeRowVLA(PyMOLGlobals * G)
| ^~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/FontGLUT8x13.cpp -o build/temp.linux-x86_64-cpython-311/layer1/FontGLUT8x13.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/FontGLUT9x15.cpp -o build/temp.linux-x86_64-cpython-311/layer1/FontGLUT9x15.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/Setting.cpp -o build/temp.linux-x86_64-cpython-311/layer1/Setting.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/Wizard.cpp -o build/temp.linux-x86_64-cpython-311/layer1/Wizard.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer1/Setting.cpp: In function ‘void SettingGenerateSideEffects(PyMOLGlobals*, int, const char*, int, int)’:
layer1/Setting.cpp:2070:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
2070 | if (SettingGetGlobal_b(G, cSetting_precomputed_lighting))
| ^~
layer1/Setting.cpp:2072:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
2072 | SceneInvalidate(G);
| ^~~~~~~~~~~~~~~
layer1/Wizard.cpp: In member function ‘virtual int CWizard::release(int, int, int, int)’:
layer1/Wizard.cpp:571:18: warning: unused variable ‘wiz’ [-Wunused-variable]
571 | if (auto wiz = WizardGet(G)) {
| ^~~
layer1/Wizard.cpp: In member function ‘virtual void CWizard::draw(CGO*)’:
layer1/Wizard.cpp:727:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
727 | else
| ^~~~
layer1/Wizard.cpp:729:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
729 | drawTopEdge();
| ^~~~~~~~~~~
In file included from layer1/Wizard.cpp:27:
layer1/Wizard.cpp: In function ‘void WizardFree(PyMOLGlobals*)’:
layer0/MemoryDebug.h:86:32: warning: deleting object of polymorphic class type ‘CWizard’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
86 | #define DeleteP(ptr) {if(ptr) {delete ptr;ptr=NULL;}}
layer1/Wizard.cpp:845:3: note: in expansion of macro ‘DeleteP’
845 | DeleteP(G->Wizard);
| ^~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/AssemblyHelpers.cpp -o build/temp.linux-x86_64-cpython-311/layer2/AssemblyHelpers.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/AtomInfo.cpp -o build/temp.linux-x86_64-cpython-311/layer2/AtomInfo.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer2/AtomInfo.cpp: In function ‘bool AtomResiFromResv(char*, size_t, int, char)’:
layer2/AtomInfo.cpp:817:56: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
817 | return snprintf(resi, size, "%d%c", resv, inscode) < size;
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
layer2/AtomInfo.cpp:818:43: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
818 | return snprintf(resi, size, "%d", resv) < size;
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/AtomInfoHistory.cpp -o build/temp.linux-x86_64-cpython-311/layer2/AtomInfoHistory.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/BondTypeHistory.cpp -o build/temp.linux-x86_64-cpython-311/layer2/BondTypeHistory.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/CifFile.cpp -o build/temp.linux-x86_64-cpython-311/layer2/CifFile.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/CifMoleculeReader.cpp -o build/temp.linux-x86_64-cpython-311/layer2/CifMoleculeReader.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer2/CifMoleculeReader.cpp: In member function ‘void seqvec_t::set(int, const char*)’:
layer2/CifMoleculeReader.cpp:108:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
108 | if (i > size())
| ~~^~~~~~~~
layer2/CifMoleculeReader.cpp: In member function ‘const char* seqvec_t::get(int) const’:
layer2/CifMoleculeReader.cpp:114:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
114 | if (i < 1 || i > size())
| ~~^~~~~~~~
layer2/CifMoleculeReader.cpp: In function ‘CoordSet** read_pdbx_struct_assembly(PyMOLGlobals*, const pymol::cif_data*, const AtomInfoType*, const CoordSet*, const char*)’:
layer2/CifMoleculeReader.cpp:827:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
827 | while (j < c_src_len * c_it->size()) {
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/Shaker.cpp -o build/temp.linux-x86_64-cpython-311/layer1/Shaker.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/SymOp.cpp -o build/temp.linux-x86_64-cpython-311/layer1/SymOp.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer1/SymOp.cpp: In member function ‘pymol::SymOp::to_string[abi:cxx11]() const’:
layer1/SymOp.cpp:37:32: warning: ‘%d’ directive output may be truncated writing between 1 and 4 bytes into a region of size between 0 and 5 [-Wformat-truncation=]
37 | std::snprintf(code, 8, "%u_%d%d%d", index + 1, x + 5, y + 5, z + 5);
| ^~
layer1/SymOp.cpp:37:26: note: directive argument in the range [-123, 132]
37 | std::snprintf(code, 8, "%u_%d%d%d", index + 1, x + 5, y + 5, z + 5);
| ^~~~~~~~~~~
layer1/SymOp.cpp:37:26: note: directive argument in the range [-123, 132]
In file included from /usr/include/stdio.h:906,
from /usr/include/c++/13/cstdio:42,
from /usr/include/c++/13/ext/string_conversions.h:45,
from /usr/include/c++/13/bits/basic_string.h:4072,
from /usr/include/c++/13/string:54,
from layer1/SymOp.h:9,
from layer1/SymOp.cpp:7:
In function ‘snprintf’,
inlined from ‘pymol::SymOp::to_string[abi:cxx11]() const’ at layer1/SymOp.cpp:37:16:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 6 and 17 bytes into a destination of size 8
54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
55 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
56 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/SymOpPConv.cpp -o build/temp.linux-x86_64-cpython-311/layer1/SymOpPConv.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/SymOpTools.cpp -o build/temp.linux-x86_64-cpython-311/layer1/SymOpTools.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/Symmetry.cpp -o build/temp.linux-x86_64-cpython-311/layer1/Symmetry.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In file included from layer2/CifMoleculeReader.cpp:31:
layer2/CifBondDict.h: In function ‘read_chem_comp_bond_dict(pymol::cif_data const*, bond_dict_t&)’:
layer2/CifBondDict.h:93:12: warning: ‘strncpy’ specified bound 8 equals destination size [-Wstringop-truncation]
93 | strncpy(s, s_, sizeof(s));
| ^
layer2/CifBondDict.h: In member function ‘bond_dict_t::get(PyMOLGlobals*, char const*, bool)’:
layer2/CifBondDict.h:93:12: warning: ‘strncpy’ specified bound 8 equals destination size [-Wstringop-truncation]
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/Text.cpp -o build/temp.linux-x86_64-cpython-311/layer1/Text.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/CoordSet.cpp -o build/temp.linux-x86_64-cpython-311/layer2/CoordSet.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In file included from /usr/include/c++/13/cassert:44,
from layer0/Field.h:24,
from layer3/Executive.h:27,
from layer2/CoordSet.cpp:54:
layer2/CoordSet.cpp: In member function ‘int CoordSet::atmToIdx(int) const’:
layer2/CoordSet.cpp:134:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
134 | assert(atm < AtmToIdx.size());
| ~~~~^~~~~~~~~~~~~~~~~
layer2/CoordSet.cpp: In member function ‘void CoordSet::updateNonDiscreteAtmToIdx(unsigned int)’:
layer2/CoordSet.cpp:140:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
140 | assert(!Obj || natom == Obj->NAtom);
| ~~~~~~^~~~~~~~~~~~~
layer2/CoordSet.cpp:145:16: warning: comparison of integer expressions of different signedness: ‘const int’ and ‘unsigned int’ [-Wsign-compare]
145 | assert(atm < natom);
| ~~~~^~~~~~~
layer2/CoordSet.cpp: In member function ‘int CoordSet::extendIndices(int)’:
layer2/CoordSet.cpp:1572:21: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare]
1572 | assert(NAtIndex <= nAtom);
| ~~~~~~~~~^~~~~~~~
layer2/CoordSet.cpp:1573:18: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare]
1573 | if (NAtIndex < nAtom) {
| ~~~~~~~~~^~~~~~~
layer2/CoordSet.cpp: In function ‘void CoordSetAtomToPDBStrVLA(PyMOLGlobals*, char**, int*, const AtomInfoType*, const float*, int, const PDBInfoRec*, const double*)’:
layer2/CoordSet.cpp:1014:14: warning: ‘char* strncpy(char*, const char*, size_t)’ output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation]
1014 | strncpy(anisoline, "ANISOU", 6);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/DistSet.cpp -o build/temp.linux-x86_64-cpython-311/layer2/DistSet.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer2/DistSet.cpp: In function ‘int DistSetGetLabelVertex(DistSet*, int, float*)’:
layer2/DistSet.cpp:43:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::array<float, 3> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
43 | if (at >= 0 && at < I->LabCoord.size()) {
| ~~~^~~~~~~~~~~~~~~~~~~~
layer2/DistSet.cpp: In member function ‘pymol::Result<std::array<float, 3> > DistSet::getLabelOffset(int) const’:
layer2/DistSet.cpp:59:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<LabPosType>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
59 | if (atm < 0 || atm >= this->LabPos.size()) {
| ~~~~^~~~~~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/GadgetSet.cpp -o build/temp.linux-x86_64-cpython-311/layer2/GadgetSet.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/HydrogenAdder.cpp -o build/temp.linux-x86_64-cpython-311/layer2/HydrogenAdder.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer2/HydrogenAdder.cpp: In function ‘int ObjectMoleculeAddSeleHydrogensRefactored(ObjectMolecule*, int, int)’:
layer2/HydrogenAdder.cpp:283:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘const int’ [-Wsign-compare]
283 | for (unsigned atm = 0; atm < n_atom_old; atm++) {
| ~~~~^~~~~~~~~~~~
layer2/HydrogenAdder.cpp:301:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘const int’ [-Wsign-compare]
301 | for (unsigned atm = 0; atm < n_atom_old; ++atm) {
| ~~~~^~~~~~~~~~~~
layer2/HydrogenAdder.cpp:349:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
349 | for (unsigned idx = 0; idx < cs->NIndex; ++idx) {
| ~~~~^~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/MmodTyping.cpp -o build/temp.linux-x86_64-cpython-311/layer2/MmodTyping.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/MmtfMoleculeReader.cpp -o build/temp.linux-x86_64-cpython-311/layer2/MmtfMoleculeReader.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer2/MmtfMoleculeReader.cpp: In function ‘ObjectMolecule* ObjectMoleculeReadMmtfStr(PyMOLGlobals*, ObjectMolecule*, const char*, int, int, int, int, int, int)’:
layer2/MmtfMoleculeReader.cpp:171:18: warning: the address of ‘MMTF_container::unitCell’ will never be NULL [-Waddress]
171 | if (container->unitCell &&
| ~~~~~~~~~~~^~~~~~~~
In file included from layer2/MmtfMoleculeReader.cpp:14:
contrib/mmtf-c/mmtf_parser.h:104:11: note: ‘MMTF_container::unitCell’ declared here
104 | float unitCell[6];
| ^~~~~~~~
layer2/MmtfMoleculeReader.cpp:223:47: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
223 | for (int l = 0, offset = atomIndex; l < group->bondAtomListCount / 2; ++l) {
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/13/cassert:44,
from layer0/vla.h:10,
from layer1/Symmetry.h:26,
from layer1/PyMOLObject.h:27,
from layer2/ObjectMolecule.h:24,
from layer2/MmtfMoleculeReader.cpp:9:
layer2/MmtfMoleculeReader.cpp:276:34: warning: comparison of integer expressions of different signedness: ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
276 | assert(cset->IdxToAtm.size() == cset->getNIndex());
| ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
layer2/MmtfMoleculeReader.cpp:287:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
287 | for (int l = 0; l < container->bondAtomListCount / 2; ++l) {
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/Mol2Typing.cpp -o build/temp.linux-x86_64-cpython-311/layer2/Mol2Typing.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/MolV3000.cpp -o build/temp.linux-x86_64-cpython-311/layer2/MolV3000.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/ObjectAlignment.cpp -o build/temp.linux-x86_64-cpython-311/layer2/ObjectAlignment.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/TypeFace.cpp -o build/temp.linux-x86_64-cpython-311/layer1/TypeFace.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/View.cpp -o build/temp.linux-x86_64-cpython-311/layer1/View.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer2/ObjectAlignment.cpp: In member function ‘ObjectAlignment::update()’:
layer2/ObjectAlignment.cpp:926:39: warning: ‘MEM[(float *)&gvert]’ may be used uninitialized [-Wmaybe-uninitialized]
926 | float mean[3], vert[3], gvert[3];
| ^~~~~
layer2/ObjectAlignment.cpp:926:39: warning: ‘MEM[(float *)&gvert + 4B]’ may be used uninitialized [-Wmaybe-uninitialized]
layer2/ObjectAlignment.cpp:926:39: warning: ‘MEM[(float *)&gvert + 8B]’ may be used uninitialized [-Wmaybe-uninitialized]
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/ObjectVolume.cpp -o build/temp.linux-x86_64-cpython-311/layer2/ObjectVolume.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/ObjectCGO.cpp -o build/temp.linux-x86_64-cpython-311/layer2/ObjectCGO.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer2/ObjectCGO.cpp: In function ‘PyObject* ObjectCGOAllStatesAsPyList(ObjectCGO*)’:
layer2/ObjectCGO.cpp:53:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectCGOState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
53 | for(a = 0; a < I->State.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer2/ObjectCGO.cpp: In function ‘int ObjectCGOAllStatesFromPyList(ObjectCGO*, PyObject*, int)’:
layer2/ObjectCGO.cpp:104:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectCGOState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
104 | for(a = 0; a < I->State.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer2/ObjectCGO.cpp: In member function ‘virtual void ObjectCGO::invalidate(cRep_t, cRepInv_t, int)’:
layer2/ObjectCGO.cpp:205:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectCGOState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
205 | if((state >= 0) && (state < I->State.size())) {
| ~~~~~~^~~~~~~~~~~~~~~~~
layer2/ObjectCGO.cpp: In member function ‘virtual void ObjectCGO::render(RenderInfo*)’:
layer2/ObjectCGO.cpp:488:9: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
488 | if (!ray)
| ^~
layer2/ObjectCGO.cpp:490:11: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
490 | ObjectCGORenderState(G, pass, ray, I, info, sobj, color, ramp, use_shader, cgo_lighting);
| ^~~~~~~~~~~~~~~~~~~~
In file included from layer2/ObjectCGO.cpp:24:
layer2/ObjectCGO.h: In copy constructor ‘ObjectCGOState::ObjectCGOState(const ObjectCGOState&)’:
layer2/ObjectCGO.h:28:17: warning: ‘ObjectCGOState::G’ will be initialized after [-Wreorder]
28 | PyMOLGlobals* G;
| ^
layer2/ObjectCGO.h:27:25: warning: ‘pymol::cache_ptr<CGO> ObjectCGOState::renderCGO’ [-Wreorder]
27 | pymol::cache_ptr<CGO> renderCGO;
| ^~~~~~~~~
layer2/ObjectCGO.cpp:517:1: warning: when initialized here [-Wreorder]
517 | ObjectCGOState::ObjectCGOState(const ObjectCGOState& other)
| ^~~~~~~~~~~~~~
layer2/ObjectCGO.h:29:58: warning: ‘ObjectCGOState::hasOpaque’ will be initialized after [-Wreorder]
29 | bool renderWithShaders, hasTransparency, cgo_lighting, hasOpaque;
| ^~~~~~~~~
layer2/ObjectCGO.h:29:44: warning: ‘bool ObjectCGOState::cgo_lighting’ [-Wreorder]
29 | bool renderWithShaders, hasTransparency, cgo_lighting, hasOpaque;
| ^~~~~~~~~~~~
layer2/ObjectCGO.cpp:517:1: warning: when initialized here [-Wreorder]
517 | ObjectCGOState::ObjectCGOState(const ObjectCGOState& other)
| ^~~~~~~~~~~~~~
layer2/ObjectCGO.cpp: In function ‘ObjectCGO* ObjectCGOFromCGO(PyMOLGlobals*, ObjectCGO*, CGO*, int)’:
layer2/ObjectCGO.cpp:602:22: warning: comparison of integer expressions of different signedness: ‘std::vector<ObjectCGOState>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
602 | if(I->State.size() <= state) {
| ~~~~~~~~~~~~~~~~^~~~~~~~
layer2/ObjectCGO.cpp: In function ‘ObjectCGO* ObjectCGODefine(PyMOLGlobals*, ObjectCGO*, PyObject*, int)’:
layer2/ObjectCGO.cpp:667:22: warning: comparison of integer expressions of different signedness: ‘std::vector<ObjectCGOState>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
667 | if(I->State.size() <= state) {
| ~~~~~~~~~~~~~~~~^~~~~~~~
layer2/ObjectCGO.cpp: In function ‘ObjectCGO* ObjectCGOFromFloatArray(PyMOLGlobals*, ObjectCGO*, float*, int, int, int)’:
layer2/ObjectCGO.cpp:725:22: warning: comparison of integer expressions of different signedness: ‘std::vector<ObjectCGOState>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
725 | if(I->State.size() <= state) {
| ~~~~~~~~~~~~~~~~^~~~~~~~
layer2/ObjectVolume.cpp: In function ‘PyObject* ObjectVolumeAllStatesAsPyList(ObjectVolume*)’:
layer2/ObjectVolume.cpp:127:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectVolumeState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
127 | for(int a = 0; a < I->State.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer2/ObjectVolume.cpp: In function ‘int ObjectVolumeAllStatesFromPyList(ObjectVolume*, PyObject*)’:
layer2/ObjectVolume.cpp:248:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectVolumeState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
248 | for(int a = 0; a < I->State.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer2/ObjectVolume.cpp: In function ‘int ObjectVolumeInvalidateMapName(ObjectVolume*, const char*, const char*)’:
layer2/ObjectVolume.cpp:313:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectVolumeState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
313 | for(int a = 0; a < I->State.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer2/ObjectVolume.cpp: In member function ‘virtual void ObjectVolume::invalidate(cRep_t, cRepInv_t, int)’:
layer2/ObjectVolume.cpp:341:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectVolumeState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
341 | for(a = 0; a < I->State.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer2/ObjectVolume.cpp: In member function ‘virtual void ObjectVolume::update()’:
layer2/ObjectVolume.cpp:402:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectVolumeState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
402 | for(int a = 0; a < I->State.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer2/ObjectVolume.cpp:440:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<float>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
440 | for (i = 0; i < vs->Ramp.size(); i += 5) {
| ~~^~~~~~~~~~~~~~~~~
layer2/ObjectVolume.cpp: In member function ‘virtual void ObjectVolume::render(RenderInfo*)’:
layer2/ObjectVolume.cpp:759:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectVolumeState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
759 | for(a = 0; a < I->State.size(); ++a) {
| ~~^~~~~~~~~~~~~~~~~
layer2/ObjectVolume.cpp: In function ‘ObjectVolume* ObjectVolumeFromXtalSym(PyMOLGlobals*, ObjectVolume*, ObjectMap*, CSymmetry*, int, int, float*, float*, float, int, float, float*, int)’:
layer2/ObjectVolume.cpp:1131:22: warning: comparison of integer expressions of different signedness: ‘std::vector<ObjectVolumeState>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
1131 | if(I->State.size() <= state) {
| ~~~~~~~~~~~~~~~~^~~~~~~~
layer2/ObjectVolume.cpp: In function ‘void ObjectVolumeRecomputeExtent(ObjectVolume*)’:
layer2/ObjectVolume.cpp:1232:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectVolumeState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1232 | for(int a = 0; a < I->State.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/13/cassert:44,
from layer0/Field.h:24,
from layer0/Isosurf.h:24,
from layer2/ObjectMap.h:25,
from layer2/ObjectVolume.h:20,
from layer2/ObjectVolume.cpp:29:
layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = unsigned char; SizeTs = {int, int, int}]’:
layer0/Field.h:114:19: required from ‘T& CField::get(SizeTs ...) [with T = unsigned char; SizeTs = {int, int, int}]’
layer2/ObjectVolume.cpp:534:44: required from here
layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare]
100 | assert(sizeof...(pos) <= n_dim());
| ~~~~~~~~~~~~~~~^~~~~~~~~~
layer2/ObjectVolume.cpp: At global scope:
layer2/ObjectVolume.cpp:657:15: warning: ‘size_t createPreintegrationTexture(PyMOLGlobals*, const float*, int)’ defined but not used [-Wunused-function]
657 | static size_t createPreintegrationTexture(PyMOLGlobals * G, const float *Table, const int count)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~
layer2/ObjectVolume.cpp: In function ‘ObjectVolumeStateGetMapState(ObjectVolumeState*)’:
layer2/ObjectVolume.cpp:74:33: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 230 [-Wformat-truncation=]
74 | "ObjectVolume-Error: map '%s' has been deleted.\n", vs->MapName
| ^~
In file included from /usr/include/stdio.h:906,
from /usr/include/python3.11/Python.h:24,
from layer0/os_python.h:34,
from layer2/ObjectVolume.cpp:20:
In function ‘snprintf’,
inlined from ‘ObjectVolumeStateGetMapState(ObjectVolumeState*)’ at layer2/ObjectVolume.cpp:73:5:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 46 and 301 bytes into a destination of size 255
54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
55 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
56 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/ObjectCallback.cpp -o build/temp.linux-x86_64-cpython-311/layer2/ObjectCallback.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/RepAngle.cpp -o build/temp.linux-x86_64-cpython-311/layer2/RepAngle.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/ObjectDist.cpp -o build/temp.linux-x86_64-cpython-311/layer2/ObjectDist.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer2/ObjectDist.cpp: In function ‘int ObjectDistMoveWithObject(ObjectDist*, ObjectMolecule*)’:
layer2/ObjectDist.cpp:111:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<pymol::copyable_ptr<DistSet> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
111 | for (int i=0; i<I->DSet.size(); i++) {
| ~^~~~~~~~~~~~~~~
layer2/ObjectDist.cpp: In function ‘void ObjectDistUpdateExtents(ObjectDist*)’:
layer2/ObjectDist.cpp:136:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<pymol::copyable_ptr<DistSet> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
136 | for(int a = 0; a < I->DSet.size(); a++) {
| ~~^~~~~~~~~~~~~~~~
layer2/ObjectDist.cpp: In function ‘PyObject* ObjectDistDSetAsPyList(ObjectDist*)’:
layer2/ObjectDist.cpp:148:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<pymol::copyable_ptr<DistSet> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
148 | for(int a = 0; a < I->DSet.size(); a++) {
| ~~^~~~~~~~~~~~~~~~
layer2/ObjectDist.cpp: In function ‘int ObjectDistDSetFromPyList(ObjectDist*, PyObject*)’:
layer2/ObjectDist.cpp:165:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<pymol::copyable_ptr<DistSet> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
165 | for(int a = 0; a < I->DSet.size(); a++) {
| ~~^~~~~~~~~~~~~~~~
layer2/ObjectDist.cpp: In member function ‘virtual void ObjectDist::update()’:
layer2/ObjectDist.cpp:241:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<pymol::copyable_ptr<DistSet> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
241 | for(int a = 0; a < I->DSet.size(); a++)
| ~~^~~~~~~~~~~~~~~~
layer2/ObjectDist.cpp: In function ‘void ObjectDistInvalidateRep(ObjectDist*, cRep_t)’:
layer2/ObjectDist.cpp:257:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<pymol::copyable_ptr<DistSet> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
257 | for(a = 0; a < I->DSet.size(); a++)
| ~~^~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/RepCartoon.cpp -o build/temp.linux-x86_64-cpython-311/layer2/RepCartoon.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer2/RepCartoon.cpp: In function ‘Rep* RepCartoonNew(CoordSet*, int)’:
layer2/RepCartoon.cpp:3731:11: warning: ‘void* memset(void*, int, size_t)’ clearing an object of non-trivial type ‘class CCInOut’; use assignment or value-initialization instead [-Wclass-memaccess]
3731 | memset(car, 0, sizeof(*car) * nAtIndex);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer2/RepCartoon.cpp:44:7: note: ‘class CCInOut’ declared here
44 | class CCInOut {
| ^~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/ObjectGadget.cpp -o build/temp.linux-x86_64-cpython-311/layer2/ObjectGadget.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In file included from layer2/CoordSet.h:24,
from layer2/RepCartoon.h:21,
from layer2/RepCartoon.cpp:27:
In function ‘SettingUniqueGetTypedValuePtr(PyMOLGlobals*, int, int, int, bool*)’,
inlined from ‘SettingUniqueGetIfDefined<bool>(PyMOLGlobals*, int, int, bool*)bool’ at layer1/Setting.h:447:39,
inlined from ‘AtomSettingGetIfDefined<bool, AtomInfoType const>(PyMOLGlobals*, AtomInfoType const*, int, bool*)bool’ at layer2/AtomInfo.h:496:33,
inlined from ‘AtomSettingGetWD<bool, AtomInfoType const>(PyMOLGlobals*, AtomInfoType const*, int, bool)bool’ at layer2/AtomInfo.h:506:36,
inlined from ‘ring_connector_visible(PyMOLGlobals*, AtomInfoType const*, AtomInfoType const*, bool)’ at layer2/RepCartoon.cpp:337:23:
layer1/Setting.h:436:11: warning: ‘out’ may be used uninitialized [-Wmaybe-uninitialized]
436 | int i = *out;
| ^~~~
In file included from layer2/ObjectMolecule.h:25,
from layer2/CoordSet.h:25:
layer2/AtomInfo.h: In function ‘ring_connector_visible(PyMOLGlobals*, AtomInfoType const*, AtomInfoType const*, bool)’:
layer2/AtomInfo.h:505:5: note: ‘out’ was declared here
505 | V out;
| ^~~
In function ‘SettingUniqueGetTypedValuePtr(PyMOLGlobals*, int, int, int, bool*)’,
inlined from ‘SettingUniqueGetIfDefined<bool>(PyMOLGlobals*, int, int, bool*)bool’ at layer1/Setting.h:447:39,
inlined from ‘AtomSettingGetIfDefined<bool, AtomInfoType const>(PyMOLGlobals*, AtomInfoType const*, int, bool*)bool’ at layer2/AtomInfo.h:496:33,
inlined from ‘AtomSettingGetWD<bool, AtomInfoType const>(PyMOLGlobals*, AtomInfoType const*, int, bool)bool’ at layer2/AtomInfo.h:506:36,
inlined from ‘ring_connector_visible(PyMOLGlobals*, AtomInfoType const*, AtomInfoType const*, bool)’ at layer2/RepCartoon.cpp:338:23:
layer1/Setting.h:436:11: warning: ‘out’ may be used uninitialized [-Wmaybe-uninitialized]
436 | int i = *out;
| ^~~~
layer2/AtomInfo.h: In function ‘ring_connector_visible(PyMOLGlobals*, AtomInfoType const*, AtomInfoType const*, bool)’:
layer2/AtomInfo.h:505:5: note: ‘out’ was declared here
505 | V out;
| ^~~
layer2/RepCartoon.cpp: In function ‘do_ring(PyMOLGlobals*, nuc_acid_data*, int, int*, ObjectMolecule*, CoordSet*, float, CGO*, int, float, int, int, int, float, float, int*, float*, float)’:
layer2/RepCartoon.cpp:1007:65: warning: ‘i’ may be used uninitialized [-Wmaybe-uninitialized]
1007 | float ladder_alpha = 1.0f - AtomSettingGetWD(G, ai_i[i], cSetting_cartoon_transparency, 1.0f - alpha);
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer2/RepCartoon.cpp:461:11: note: ‘i’ was declared here
461 | int i;
| ^
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/ObjectGadgetRamp.cpp -o build/temp.linux-x86_64-cpython-311/layer2/ObjectGadgetRamp.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In file included from layer1/Symmetry.h:26,
from layer2/CoordSet.h:22:
In member function ‘pymol::vla<AtomInfoType>::operator+<int>(int)AtomInfoType*’,
inlined from ‘GenerateRepCartoonProcessCylindricalHelices(PyMOLGlobals*, ObjectMolecule*, CoordSet*, CGO*, CExtrude*, int, int*, float*, float*, float*, CCInOut const*, int*, float*, int, int, float, float)’ at layer2/RepCartoon.cpp:1739:34,
inlined from ‘GenerateRepCartoonCGO(CoordSet*, ObjectMolecule*, nuc_acid_data*, short, float*, int, float*, float*, float*, CCInOut const*, int*, int*, int*, float*, float)’ at layer2/RepCartoon.cpp:2553:53:
layer0/vla.h:118:60: warning: ‘atom_index2’ may be used uninitialized [-Wmaybe-uninitialized]
118 | template <typename S> T* operator+(S i) { return m_vla + i; }
| ^
layer2/RepCartoon.cpp: In function ‘GenerateRepCartoonCGO(CoordSet*, ObjectMolecule*, nuc_acid_data*, short, float*, int, float*, float*, float*, CCInOut const*, int*, int*, int*, float*, float)’:
layer2/RepCartoon.cpp:1593:20: note: ‘atom_index2’ was declared here
1593 | int atom_index1, atom_index2, *s,
| ^~~~~~~~~~~
layer2/RepCartoon.cpp: In function ‘RepCartoonNew(CoordSet*, int)’:
layer2/RepCartoon.cpp:3206:23: warning: ‘MEM[(float *)&t2]’ may be used uninitialized [-Wmaybe-uninitialized]
3206 | float t0[3], t1[3], t2[3];
| ^~
layer2/RepCartoon.cpp:3206:23: warning: ‘MEM[(float *)&t2 + 4B]’ may be used uninitialized [-Wmaybe-uninitialized]
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/ObjectGroup.cpp -o build/temp.linux-x86_64-cpython-311/layer2/ObjectGroup.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/RepCylBond.cpp -o build/temp.linux-x86_64-cpython-311/layer2/RepCylBond.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/ObjectMap.cpp -o build/temp.linux-x86_64-cpython-311/layer2/ObjectMap.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer2/ObjectMap.cpp: In function ‘int ObjectMapValidXtal(ObjectMap*, int)’:
layer2/ObjectMap.cpp:133:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
133 | if((state >= 0) && (state < I->State.size())) {
| ~~~~~~^~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp: In function ‘pymol::Result<> ObjectMapTrim(ObjectMap*, int, float*, float*, int)’:
layer2/ObjectMap.cpp:914:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
914 | } else if((state >= 0) && (state < I->State.size()) && (I->State[state].Active)) {
| ~~~~~~^~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp: In function ‘pymol::Result<> ObjectMapDouble(ObjectMap*, int)’:
layer2/ObjectMap.cpp:931:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
931 | } else if((state >= 0) && (state < I->State.size()) && (I->State[state].Active)) {
| ~~~~~~^~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp: In function ‘pymol::Result<> ObjectMapHalve(ObjectMap*, int, int)’:
layer2/ObjectMap.cpp:946:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
946 | } else if((state >= 0) && (state < I->State.size()) && (I->State[state].Active)) {
| ~~~~~~^~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp: In function ‘void ObjectMapRegeneratePoints(ObjectMap*)’:
layer2/ObjectMap.cpp:1189:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1189 | for (i=0; i<om->State.size();i++){
| ~^~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp: In function ‘PyObject* ObjectMapAllStatesAsPyList(ObjectMap*)’:
layer2/ObjectMap.cpp:1279:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1279 | for(a = 0; a < I->State.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp: In function ‘int ObjectMapAllStatesFromPyList(ObjectMap*, PyObject*)’:
layer2/ObjectMap.cpp:1437:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1437 | for(a = 0; a < I->State.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp: In function ‘int ObjectMapNewCopy(PyMOLGlobals*, const ObjectMap*, ObjectMap**, int, int)’:
layer2/ObjectMap.cpp:1509:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1509 | for(state = 0; state < src->State.size(); state++) {
| ~~~~~~^~~~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp:1518:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1518 | if(source_state < src->State.size()) {
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp: In function ‘ObjectMapState* ObjectMapStatePrime(ObjectMap*, int)’:
layer2/ObjectMap.cpp:1535:22: warning: comparison of integer expressions of different signedness: ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
1535 | if(I->State.size() <= state) {
| ~~~~~~~~~~~~~~~~^~~~~~~~
layer2/ObjectMap.cpp: In function ‘void ObjectMapUpdateExtents(ObjectMap*)’:
layer2/ObjectMap.cpp:1548:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1548 | for(a = 0; a < I->State.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp: In member function ‘virtual void ObjectMap::invalidate(cRep_t, cRepInv_t, int)’:
layer2/ObjectMap.cpp:1674:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1674 | for(a = 0; a < I->State.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp: In function ‘int ObjectMapCCP4StrToMap(ObjectMap*, char*, int, int, int, int)’:
layer2/ObjectMap.cpp:2297:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2297 | if(bytes < 256 * sizeof(int)) {
| ~~~~~~^~~~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp:2307:22: warning: comparison of integer expressions of different signedness: ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2307 | if(I->State.size() <= state) {
| ~~~~~~~~~~~~~~~~^~~~~~~~
layer2/ObjectMap.cpp: In function ‘int ObjectMapPHIStrToMap(ObjectMap*, char*, int, int, int)’:
layer2/ObjectMap.cpp:2942:22: warning: comparison of integer expressions of different signedness: ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2942 | if(I->State.size() <= state) {
| ~~~~~~~~~~~~~~~~^~~~~~~~
layer2/ObjectMap.cpp: In function ‘int ObjectMapXPLORStrToMap(ObjectMap*, char*, int, int)’:
layer2/ObjectMap.cpp:3216:22: warning: comparison of integer expressions of different signedness: ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
3216 | if(I->State.size() <= state) {
| ~~~~~~~~~~~~~~~~^~~~~~~~
layer2/ObjectMap.cpp: In function ‘int ObjectMapFLDStrToMap(ObjectMap*, char*, int, int, int)’:
layer2/ObjectMap.cpp:3437:22: warning: comparison of integer expressions of different signedness: ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
3437 | if(I->State.size() <= state) {
| ~~~~~~~~~~~~~~~~^~~~~~~~
layer2/ObjectMap.cpp: In function ‘int ObjectMapBRIXStrToMap(ObjectMap*, char*, int, int, int)’:
layer2/ObjectMap.cpp:3766:22: warning: comparison of integer expressions of different signedness: ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
3766 | if(I->State.size() <= state) {
| ~~~~~~~~~~~~~~~~^~~~~~~~
layer2/ObjectMap.cpp: In function ‘int ObjectMapGRDStrToMap(ObjectMap*, char*, int, int, int)’:
layer2/ObjectMap.cpp:4172:22: warning: comparison of integer expressions of different signedness: ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
4172 | if(I->State.size() <= state) {
| ~~~~~~~~~~~~~~~~^~~~~~~~
layer2/ObjectMap.cpp: In function ‘ObjectMap* ObjectMapLoadCCP4(PyMOLGlobals*, ObjectMap*, const char*, int, int, int, int, int)’:
layer2/ObjectMap.cpp:4694:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
4694 | if(state < I->State.size()) {
| ~~~~~~^~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp: In function ‘int ObjectMapACNTStrToMap(ObjectMap*, char*, int, int, int)’:
layer2/ObjectMap.cpp:5245:22: warning: comparison of integer expressions of different signedness: ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
5245 | if(I->State.size() <= state) {
| ~~~~~~~~~~~~~~~~^~~~~~~~
layer2/ObjectMap.cpp: In function ‘ObjectMap* ObjectMapLoadXPLOR(PyMOLGlobals*, ObjectMap*, const char*, int, int, int)’:
layer2/ObjectMap.cpp:5557:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
5557 | if(state < I->State.size()) {
| ~~~~~~^~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp: In function ‘ObjectMap* ObjectMapLoadChemPyBrick(PyMOLGlobals*, ObjectMap*, PyObject*, int, int, int)’:
layer2/ObjectMap.cpp:5711:24: warning: comparison of integer expressions of different signedness: ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
5711 | if(I->State.size() <= state) {
| ~~~~~~~~~~~~~~~~^~~~~~~~
layer2/ObjectMap.cpp: In function ‘ObjectMap* ObjectMapLoadChemPyMap(PyMOLGlobals*, ObjectMap*, PyObject*, int, int, int)’:
layer2/ObjectMap.cpp:5809:24: warning: comparison of integer expressions of different signedness: ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
5809 | if(I->State.size() <= state) {
| ~~~~~~~~~~~~~~~~^~~~~~~~
In file included from /usr/include/c++/13/cassert:44,
from layer0/Field.h:24,
from layer0/Isosurf.h:24,
from layer2/ObjectMap.h:25,
from layer2/ObjectMap.cpp:27:
layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = float; SizeTs = {int, int, int, int}]’:
layer2/ObjectMap.cpp:198:30: required from here
layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare]
100 | assert(sizeof...(pos) <= n_dim());
| ~~~~~~~~~~~~~~~^~~~~~~~~~
layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = float; SizeTs = {int, int, int}]’:
layer2/ObjectMap.cpp:1605:14: required from here
layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare]
layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = int; SizeTs = {int, int, int}]’:
layer0/Field.h:114:19: required from ‘T& CField::get(SizeTs ...) [with T = int; SizeTs = {int, int, int}]’
layer2/ObjectMap.cpp:5967:46: required from here
layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare]
In file included from /usr/lib64/python3.11/site-packages/numpy/core/include/numpy/ndarrayobject.h:21,
from /usr/lib64/python3.11/site-packages/numpy/core/include/numpy/arrayobject.h:5,
from layer0/os_numpy.h:8,
from layer2/ObjectMap.cpp:22:
/usr/lib64/python3.11/site-packages/numpy/core/include/numpy/__multiarray_api.h: At global scope:
/usr/lib64/python3.11/site-packages/numpy/core/include/numpy/__multiarray_api.h:1477:1: warning: ‘int _import_array()’ defined but not used [-Wunused-function]
1477 | _import_array(void)
| ^~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/RepDihedral.cpp -o build/temp.linux-x86_64-cpython-311/layer2/RepDihedral.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/RepDistDash.cpp -o build/temp.linux-x86_64-cpython-311/layer2/RepDistDash.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer2/ObjectMap.cpp: In function ‘ObjectMapDump(ObjectMap const*, char const*, int, int)’:
layer2/ObjectMap.cpp:5982:24: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 239 [-Wformat-truncation=]
5982 | " ObjectMapDump: %s written to %s\n", om->Name, fname ENDFB(om->G);
| ^~
In file included from /usr/include/stdio.h:906,
from /usr/include/python3.11/Python.h:24,
from layer0/os_python.h:34,
from layer2/ObjectMap.cpp:21:
In function ‘snprintf’,
inlined from ‘ObjectMapDump(ObjectMap const*, char const*, int, int)’ at layer2/ObjectMap.cpp:5981:5:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output 30 or more bytes (assuming 285) into a destination of size 255
54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
55 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
56 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/RepDistLabel.cpp -o build/temp.linux-x86_64-cpython-311/layer2/RepDistLabel.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer2/ObjectMap.cpp: In function ‘ObjectMapGRDStrToMap(ObjectMap*, char*, int, int, int) [clone .isra.0]’:
layer2/ObjectMap.cpp:4290:18: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 243 [-Wformat-truncation=]
4290 | " ObjectMap: %s\n", cc ENDFB(I->G);
| ^~ ~~
In function ‘snprintf’,
inlined from ‘ObjectMapGRDStrToMap(ObjectMap*, char*, int, int, int) [clone .isra.0]’ at layer2/ObjectMap.cpp:4289:3:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 14 and 1037 bytes into a destination of size 255
54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
55 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
56 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp: In function ‘ObjectMapGRDStrToMap(ObjectMap*, char*, int, int, int) [clone .isra.0]’:
layer2/ObjectMap.cpp:4290:18: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 243 [-Wformat-truncation=]
4290 | " ObjectMap: %s\n", cc ENDFB(I->G);
| ^~ ~~
In function ‘snprintf’,
inlined from ‘ObjectMapGRDStrToMap(ObjectMap*, char*, int, int, int) [clone .isra.0]’ at layer2/ObjectMap.cpp:4289:3:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 14 and 1037 bytes into a destination of size 255
54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
55 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
56 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp: In function ‘ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, char const*, int, int, int, int)’:
layer2/ObjectMap.cpp:2961:22: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=]
2961 | " PHIStrToMap: %s\n", cc ENDFB(I->G);
| ^~ ~~
In function ‘snprintf’,
inlined from ‘ObjectMapPHIStrToMap(ObjectMap*, char*, int, int, int)’ at layer2/ObjectMap.cpp:2960:5,
inlined from ‘ObjectMapReadPHIStr(PyMOLGlobals*, ObjectMap*, char*, int, int, int)’ at layer2/ObjectMap.cpp:4803:25,
inlined from ‘ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, char const*, int, int, int, int)’ at layer2/ObjectMap.cpp:4835:28:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 16 and 1039 bytes into a destination of size 255
54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
55 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
56 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp: In function ‘ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, char const*, int, int, int, int)’:
layer2/ObjectMap.cpp:2970:22: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=]
2970 | " PHIStrToMap: %s\n", cc ENDFB(I->G);
| ^~ ~~
In function ‘snprintf’,
inlined from ‘ObjectMapPHIStrToMap(ObjectMap*, char*, int, int, int)’ at layer2/ObjectMap.cpp:2969:5,
inlined from ‘ObjectMapReadPHIStr(PyMOLGlobals*, ObjectMap*, char*, int, int, int)’ at layer2/ObjectMap.cpp:4803:25,
inlined from ‘ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, char const*, int, int, int, int)’ at layer2/ObjectMap.cpp:4835:28:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 16 and 1039 bytes into a destination of size 255
54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
55 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
56 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp: In function ‘ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, char const*, int, int, int, int)’:
layer2/ObjectMap.cpp:2976:22: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=]
2976 | " PHIStrToMap: %s\n", cc ENDFB(I->G);
| ^~ ~~
In function ‘snprintf’,
inlined from ‘ObjectMapPHIStrToMap(ObjectMap*, char*, int, int, int)’ at layer2/ObjectMap.cpp:2975:5,
inlined from ‘ObjectMapReadPHIStr(PyMOLGlobals*, ObjectMap*, char*, int, int, int)’ at layer2/ObjectMap.cpp:4803:25,
inlined from ‘ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, char const*, int, int, int, int)’ at layer2/ObjectMap.cpp:4835:28:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 16 and 1039 bytes into a destination of size 255
54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
55 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
56 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp: In function ‘ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, char const*, int, int, int, int)’:
layer2/ObjectMap.cpp:3058:22: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=]
3058 | " PHIStrToMap: %s\n", cc ENDFB(I->G);
| ^~ ~~
In function ‘snprintf’,
inlined from ‘ObjectMapPHIStrToMap(ObjectMap*, char*, int, int, int)’ at layer2/ObjectMap.cpp:3057:5,
inlined from ‘ObjectMapReadPHIStr(PyMOLGlobals*, ObjectMap*, char*, int, int, int)’ at layer2/ObjectMap.cpp:4803:25,
inlined from ‘ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, char const*, int, int, int, int)’ at layer2/ObjectMap.cpp:4835:28:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 16 and 1039 bytes into a destination of size 255
54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
55 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
56 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/RepDot.cpp -o build/temp.linux-x86_64-cpython-311/layer2/RepDot.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/ObjectMesh.cpp -o build/temp.linux-x86_64-cpython-311/layer2/ObjectMesh.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer2/RepDot.cpp: In function ‘RepDotDoNew(CoordSet*, cRepDot_t, int)’:
layer2/RepDot.cpp:436:17: warning: ‘vn’ may be used uninitialized [-Wmaybe-uninitialized]
436 | *(vn++) = sp->dot[b][2];
| ~~~~~~~~^~~~~~~~~~~~~~~
layer2/RepDot.cpp:263:14: note: ‘vn’ was declared here
263 | float *v, *vn;
| ^~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/RepEllipsoid.cpp -o build/temp.linux-x86_64-cpython-311/layer2/RepEllipsoid.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer2/ObjectMesh.cpp: In member function ‘ObjectMesh::update()’:
layer2/ObjectMesh.cpp:502:41: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 226 [-Wformat-truncation=]
502 | "ObjectMeshUpdate-Error: map '%s' has been deleted.\n", ms->MapName
| ^~
In file included from layer1/Ortho.h:32,
from layer1/Scene.h:23,
from layer2/ObjectMesh.cpp:33:
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 50 and 305 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer2/ObjectMesh.cpp:535:40: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 232 [-Wformat-truncation=]
535 | " ObjectMesh: updating \"%s\".\n", I->Name ENDFB(G);
| ^~
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 27 and 282 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/RepLabel.cpp -o build/temp.linux-x86_64-cpython-311/layer2/RepLabel.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer2/ObjectMesh.cpp: In function ‘ObjectMeshDump(ObjectMesh*, char const*, int, int)’:
layer2/ObjectMesh.cpp:329:27: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 238 [-Wformat-truncation=]
329 | " ObjectMeshDump: %s written to %s\n", I->Name, fname ENDFB(I->G);
| ^~
layer0/Feedback.h:274:15: note: ‘snprintf’ output 31 or more bytes (assuming 286) into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/ObjectMolecule.cpp -o build/temp.linux-x86_64-cpython-311/layer2/ObjectMolecule.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer2/ObjectMolecule.cpp: In function ‘int ObjectMoleculeFillOpenValences(ObjectMolecule*, int)’:
layer2/ObjectMolecule.cpp:3531:14: warning: comparison of integer expressions of different signedness: ‘const unsigned int’ and ‘signed char’ [-Wsign-compare]
3531 | if((nn >= ai->valence) || (!flag))
| ~~~^~~~~~~~~~~~~~
layer2/ObjectMolecule.cpp: In function ‘pymol::Result<> ObjectMoleculeAddBondByIndices(ObjectMolecule*, unsigned int, unsigned int, int)’:
layer2/ObjectMolecule.cpp:4328:12: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
4328 | if (atm1 >= I->NAtom || atm2 >= I->NAtom) {
| ~~~~~^~~~~~~~~~~
layer2/ObjectMolecule.cpp:4328:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
4328 | if (atm1 >= I->NAtom || atm2 >= I->NAtom) {
| ~~~~~^~~~~~~~~~~
layer2/ObjectMolecule.cpp: In member function ‘bool ObjectMolecule::atomHasAnyCoordinates(size_t) const’:
layer2/ObjectMolecule.cpp:11713:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare]
11713 | for (size_t i = 0; i < NCSet; ++i) {
| ~~^~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/RepMesh.cpp -o build/temp.linux-x86_64-cpython-311/layer2/RepMesh.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In file included from /usr/include/c++/13/cassert:44,
from layer0/Field.h:24,
from layer0/Isosurf.h:24,
from layer2/RepMesh.cpp:28:
layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = float; SizeTs = {int, int, int}]’:
layer2/RepMesh.cpp:970:27: required from here
layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare]
100 | assert(sizeof...(pos) <= n_dim());
| ~~~~~~~~~~~~~~~^~~~~~~~~~
layer2/ObjectMolecule.cpp: In function ‘ObjectMoleculeMOLStr2CoordSet(PyMOLGlobals*, char const*, AtomInfoType**, char const**) [clone .constprop.0]’:
layer2/ObjectMolecule.cpp:7579:37: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 224 [-Wformat-truncation=]
7579 | " ObjMolMOLStr2CoordSet: title '%s'\n", nameTmp ENDFB(G)
| ^~ ~~~~~~~
In file included from layer1/Ortho.h:32,
from layer2/ObjectMolecule.cpp:31:
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 34 and 289 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer2/ObjectMolecule.cpp:7627:16: warning: ‘strncpy’ output may be truncated copying 4 bytes from a string of length 1023 [-Wstringop-truncation]
7627 | strncpy(atInfo[a].elem, cc, cElemNameLen);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer2/RepMesh.cpp:24:
layer2/RepMesh.cpp: In function ‘RepMeshNew(CoordSet*, int)’:
layer2/RepMesh.cpp:1053:13: warning: ‘field’ may be used uninitialized [-Wmaybe-uninitialized]
1053 | DeleteP(field);
| ^~~~~
layer2/RepMesh.cpp:715:13: note: ‘field’ was declared here
715 | Isofield *field;
| ^~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/RepNonbonded.cpp -o build/temp.linux-x86_64-cpython-311/layer2/RepNonbonded.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer2/ObjectMolecule.cpp: In member function ‘ObjectMolecule::update()’:
layer2/ObjectMolecule.cpp:10605:82: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size between 181 and 191 [-Wformat-truncation=]
10605 | " ObjectMolecule-DEBUG: updating representations for state %d of \"%s\".\n",
| ^~
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 68 and 333 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer2/ObjectMolecule.cpp: In function ‘ObjectMoleculeMoveAtom(ObjectMolecule*, int, int, float const*, int, int)’:
layer2/ObjectMolecule.cpp:10731:43: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 1004 [-Wformat-overflow=]
10731 | sprintf(line, "cmd.translate_atom(\"%s\",%15.9f,%15.9f,%15.9f,%d,%d,%d)\n",
| ^~
10732 | buffer, v[0], v[1], v[2], state + 1, mode, 0);
| ~~~~~~
layer2/ObjectMolecule.cpp:10731:21: note: directive argument in the range [-2147483647, 2147483647]
10731 | sprintf(line, "cmd.translate_atom(\"%s\",%15.9f,%15.9f,%15.9f,%d,%d,%d)\n",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer2/ObjectMolecule.cpp:10731:14: note: ‘sprintf’ output between 78 and 2036 bytes into a destination of size 1024
10731 | sprintf(line, "cmd.translate_atom(\"%s\",%15.9f,%15.9f,%15.9f,%d,%d,%d)\n",
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
10732 | buffer, v[0], v[1], v[2], state + 1, mode, 0);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/RepNonbondedSphere.cpp -o build/temp.linux-x86_64-cpython-311/layer2/RepNonbondedSphere.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/RepRibbon.cpp -o build/temp.linux-x86_64-cpython-311/layer2/RepRibbon.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer2/RepRibbon.cpp: In function ‘RepRibbonNew(CoordSet*, int)’:
layer2/RepRibbon.cpp:378:15: warning: ‘MEM <vector(2) float> [(float *)_717]’ may be used uninitialized [-Wmaybe-uninitialized]
378 | *(v1++) = *(v++); /* first segment */
| ^~~~~~
layer2/RepRibbon.cpp:380:15: warning: ‘MEM[(float *)_717 + 8B]’ may be used uninitialized [-Wmaybe-uninitialized]
380 | *(v1++) = *(v++);
| ^~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/RepSphere.cpp -o build/temp.linux-x86_64-cpython-311/layer2/RepSphere.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In function ‘ObjectMoleculeXYZStr2CoordSet(PyMOLGlobals*, char const*, AtomInfoType**, char const**)’,
inlined from ‘ObjectMoleculeReadStr(PyMOLGlobals*, ObjectMolecule*, char const**, cLoadType_t, int, int, int, int, char*, short, _OVLexicon*)’ at layer2/ObjectMolecule.cpp:8551:43:
layer2/ObjectMolecule.cpp:2898:16: warning: ‘strncpy’ output may be truncated copying 4 bytes from a string of length 1023 [-Wstringop-truncation]
2898 | strncpy(ai->elem, cc, cElemNameLen);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/ObjectMolecule2.cpp -o build/temp.linux-x86_64-cpython-311/layer2/ObjectMolecule2.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/RepSphereGenerate.cpp -o build/temp.linux-x86_64-cpython-311/layer2/RepSphereGenerate.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer2/ObjectMolecule2.cpp: In function ‘bool ObjectMoleculeConnect(ObjectMolecule*, int&, pymol::vla<BondType>&, CoordSet*, int, int, bool)’:
layer2/ObjectMolecule2.cpp:3750:28: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
3750 | for (unsigned i = 0; i < cs->NIndex; ++i) {
| ~~^~~~~~~~~~~~
layer2/ObjectMolecule2.cpp: In lambda function:
layer2/ObjectMolecule2.cpp:3779:15: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘const int’ [-Wsign-compare]
3779 | if (i <= j && !symop)
| ~~^~~~
layer2/ObjectMolecule2.cpp: In function ‘bool ObjectMoleculeConnect(ObjectMolecule*, int&, pymol::vla<BondType>&, CoordSet*, int, int, bool)’:
layer2/ObjectMolecule2.cpp:3884:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
3884 | for (unsigned i = 0; i < cs->NIndex; ++i) {
| ~~^~~~~~~~~~~~
layer2/ObjectMolecule2.cpp:3900:28: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
3900 | for (unsigned a = 0; a < cs->NTmpBond; ++a) {
| ~~^~~~~~~~~~~~~~
layer2/ObjectMolecule2.cpp:3950:28: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
3950 | for (unsigned a = 0; a < cs->NTmpLinkBond; ++a) {
| ~~^~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/RepSphereImmediate.cpp -o build/temp.linux-x86_64-cpython-311/layer2/RepSphereImmediate.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/RepSurface.cpp -o build/temp.linux-x86_64-cpython-311/layer2/RepSurface.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer2/ObjectMolecule2.cpp: In function ‘ObjectMoleculeAddPseudoatom(ObjectMolecule*, int, char const*, char const*, char const*, char const*, char const*, char const*, float, int, float, float, char const*, float const*, int, int, int, int)’:
layer2/ObjectMolecule2.cpp:335:27: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 238 [-Wformat-truncation=]
335 | " ObjMol: created %s/%s/%s/%s`%d%c/%s\n",
| ^~
In file included from /usr/include/stdio.h:906,
from /usr/include/python3.11/Python.h:24,
from layer0/os_python.h:34,
from layer2/ObjectMolecule2.cpp:24:
In function ‘snprintf’,
inlined from ‘ObjectMoleculeAddPseudoatom(ObjectMolecule*, int, char const*, char const*, char const*, char const*, char const*, char const*, float, int, float, float, char const*, float const*, int, int, int, int)’ at layer2/ObjectMolecule2.cpp:334:7:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 26 and 291 bytes into a destination of size 255
54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
55 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
56 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
layer2/RepSurface.cpp: In function ‘void RepSurfaceSmoothEdges(RepSurface*)’:
layer2/RepSurface.cpp:4403:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
4403 | for (auto j = 0; j < edges[i].size(); j += 3) {
| ~~^~~~~~~~~~~~~~~~~
layer2/RepSurface.cpp:4415:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
4415 | for (auto j = 0; j < edges[i].size(); j += 3) {
| ~~^~~~~~~~~~~~~~~~~
layer2/RepSurface.cpp:4426:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
4426 | for (auto i = 0; i < unique_edges.size(); i += 2) {
| ~~^~~~~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/ObjectMolecule3.cpp -o build/temp.linux-x86_64-cpython-311/layer2/ObjectMolecule3.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer2/ObjectMolecule3.cpp: In function ‘std::vector<int> ObjectMoleculeGetMolMappingVec(const ObjectMolecule&)’:
layer2/ObjectMolecule3.cpp:42:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare]
42 | for (size_t b = 0; b < objmol.NBond; ++b) {
| ~~^~~~~~~~~~~~~~
layer2/ObjectMolecule3.cpp: In function ‘void ObjectMoleculePBCUnwrap(ObjectMolecule&, bool)’:
layer2/ObjectMolecule3.cpp:151:34: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
151 | for (unsigned atm = 0; atm != objmol.NAtom; ++atm) {
| ~~~~^~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/ObjectSlice.cpp -o build/temp.linux-x86_64-cpython-311/layer2/ObjectSlice.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer2/ObjectSlice.cpp: In function ‘PyObject* ObjectSliceAllStatesAsPyList(ObjectSlice*)’:
layer2/ObjectSlice.cpp:78:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectSliceState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
78 | for(a = 0; a < I->State.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer2/ObjectSlice.cpp: In member function ‘virtual void ObjectSlice::invalidate(cRep_t, cRepInv_t, int)’:
layer2/ObjectSlice.cpp:210:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectSliceState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
210 | for(a = 0; a < State.size(); a++) {
| ~~^~~~~~~~~~~~~~
layer2/ObjectSlice.cpp: In member function ‘virtual void ObjectSlice::update()’:
layer2/ObjectSlice.cpp:633:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectSliceState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
633 | for(a = 0; a < I->State.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer2/ObjectSlice.cpp: In function ‘void ObjectSliceDrag(ObjectSlice*, int, int, float*, float*, float*)’:
layer2/ObjectSlice.cpp:679:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectSliceState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
679 | if(state < I->State.size())
| ~~~~~~^~~~~~~~~~~~~~~~~
layer2/ObjectSlice.cpp: In function ‘int ObjectSliceGetVertex(ObjectSlice*, int, int, float*)’:
layer2/ObjectSlice.cpp:750:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectSliceState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
750 | if(state < I->State.size())
| ~~~~~~^~~~~~~~~~~~~~~~~
layer2/ObjectSlice.cpp: In member function ‘virtual void ObjectSlice::render(RenderInfo*)’:
layer2/ObjectSlice.cpp:925:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectSliceState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
925 | if(state < I->State.size())
| ~~~~~~^~~~~~~~~~~~~~~~~
layer2/ObjectSlice.cpp:967:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectSliceState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
967 | if(cur_state >= I->State.size())
| ~~~~~~~~~~^~~~~~~~~~~~~~~~~~
layer2/ObjectSlice.cpp:981:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectSliceState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
981 | if(state < I->State.size())
| ~~~~~~^~~~~~~~~~~~~~~~~
layer2/ObjectSlice.cpp:1226:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectSliceState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1226 | if(cur_state >= I->State.size())
| ~~~~~~~~~~^~~~~~~~~~~~~~~~~~
layer2/ObjectSlice.cpp: In function ‘ObjectSliceState* ObjectSliceStateGetActive(ObjectSlice*, int)’:
layer2/ObjectSlice.cpp:1244:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectSliceState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1244 | if(state < I->State.size()) {
| ~~~~~~^~~~~~~~~~~~~~~~~
layer2/ObjectSlice.cpp: In function ‘ObjectSlice* ObjectSliceFromMap(PyMOLGlobals*, ObjectSlice*, ObjectMap*, int, int)’:
layer2/ObjectSlice.cpp:1285:22: warning: comparison of integer expressions of different signedness: ‘std::vector<ObjectSliceState>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
1285 | if(I->State.size() <= state) {
| ~~~~~~~~~~~~~~~~^~~~~~~~
layer2/ObjectSlice.cpp: In function ‘void ObjectSliceRecomputeExtent(ObjectSlice*)’:
layer2/ObjectSlice.cpp:1362:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectSliceState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1362 | for(a = 0; a < I->State.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer2/ObjectSlice.cpp: In member function ‘ObjectSlice::update()’:
layer2/ObjectSlice.cpp:639:42: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 225 [-Wformat-truncation=]
639 | "ObjectSliceUpdate-Error: map '%s' has been deleted.\n", oss->MapName
| ^~
In file included from layer1/Ortho.h:32,
from layer1/Scene.h:23,
from layer2/ObjectSlice.cpp:34:
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 51 and 306 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer2/ObjectSlice.cpp:650:39: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 231 [-Wformat-truncation=]
650 | " ObjectSlice: updating \"%s\".\n", I->Name ENDFB(I->G);
| ^~
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 28 and 283 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/RepWireBond.cpp -o build/temp.linux-x86_64-cpython-311/layer2/RepWireBond.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/ObjectSurface.cpp -o build/temp.linux-x86_64-cpython-311/layer2/ObjectSurface.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer2/ObjectSurface.cpp: In function ‘PyObject* ObjectSurfaceAllStatesAsPyList(ObjectSurface*)’:
layer2/ObjectSurface.cpp:83:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectSurfaceState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
83 | for(int a = 0; a < I->State.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer2/ObjectSurface.cpp: In function ‘void ObjectSurfaceDump(ObjectSurface*, const char*, int, int)’:
layer2/ObjectSurface.cpp:236:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectSurfaceState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
236 | if(state < I->State.size()) {
| ~~~~~~^~~~~~~~~~~~~~~~~
layer2/ObjectSurface.cpp: In member function ‘virtual void ObjectSurface::invalidate(cRep_t, cRepInv_t, int)’:
layer2/ObjectSurface.cpp:281:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectSurfaceState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
281 | for(int a = 0; a < I->State.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer2/ObjectSurface.cpp: In function ‘int ObjectSurfaceInvalidateMapName(ObjectSurface*, const char*, const char*)’:
layer2/ObjectSurface.cpp:311:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectSurfaceState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
311 | for(int a = 0; a < I->State.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer2/ObjectSurface.cpp: In function ‘ObjectSurface* ObjectSurfaceFromBox(PyMOLGlobals*, ObjectSurface*, ObjectMap*, int, int, float*, float*, float, cIsosurfaceMode, float, pymol::vla<float>&&, cIsosurfaceSide, int)’:
layer2/ObjectSurface.cpp:1029:22: warning: comparison of integer expressions of different signedness: ‘std::vector<ObjectSurfaceState>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
1029 | if(I->State.size() <= state) {
| ~~~~~~~~~~~~~~~~^~~~~~~~
layer2/ObjectSurface.cpp: In function ‘int ObjectSurfaceSetLevel(ObjectSurface*, float, int, int)’:
layer2/ObjectSurface.cpp:1125:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectSurfaceState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1125 | for(int a = 0; a < I->State.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/Sculpt.cpp -o build/temp.linux-x86_64-cpython-311/layer2/Sculpt.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer2/ObjectSurface.cpp: In function ‘ObjectSurfaceDump(ObjectSurface*, char const*, int, int)’:
layer2/ObjectSurface.cpp:268:30: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 235 [-Wformat-truncation=]
268 | " ObjectSurfaceDump: %s written to %s\n", I->Name, fname ENDFB(I->G);
| ^~
In file included from layer1/Ortho.h:32,
from layer1/Scene.h:23,
from layer2/ObjectSurface.cpp:35:
layer0/Feedback.h:274:15: note: ‘snprintf’ output 34 or more bytes (assuming 289) into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer2/ObjectSurface.cpp: In member function ‘ObjectSurface::update()’:
layer2/ObjectSurface.cpp:493:43: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 229 [-Wformat-truncation=]
493 | " ObjectSurface: updating \"%s\".\n", I->Name ENDFB(I->G);
| ^~
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 30 and 285 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer3/MoleculeExporter.cpp -o build/temp.linux-x86_64-cpython-311/layer3/MoleculeExporter.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/SculptCache.cpp -o build/temp.linux-x86_64-cpython-311/layer2/SculptCache.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/SideChainHelper.cpp -o build/temp.linux-x86_64-cpython-311/layer2/SideChainHelper.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In file included from layer1/PyMOLObject.h:26,
from layer2/ObjectMolecule.h:24,
from layer2/SideChainHelper.h:9,
from layer2/SideChainHelper.cpp:10:
In function ‘SettingUniqueGetTypedValuePtr(PyMOLGlobals*, int, int, int, bool*)’,
inlined from ‘SettingUniqueGetIfDefined<bool>(PyMOLGlobals*, int, int, bool*)bool’ at layer1/Setting.h:447:39,
inlined from ‘AtomSettingGetIfDefined<bool, AtomInfoType const>(PyMOLGlobals*, AtomInfoType const*, int, bool*)bool’ at layer2/AtomInfo.h:496:33,
inlined from ‘AtomSettingGetWD<bool, AtomInfoType const>(PyMOLGlobals*, AtomInfoType const*, int, bool)bool’ at layer2/AtomInfo.h:506:36,
inlined from ‘SideChainHelperMarkNonCartoonBonded(bool*, ObjectMolecule const*, CoordSet const*, bool, bool)’ at layer2/SideChainHelper.cpp:47:26:
layer1/Setting.h:436:11: warning: ‘out’ may be used uninitialized [-Wmaybe-uninitialized]
436 | int i = *out;
| ^~~~
In file included from layer2/ObjectMolecule.h:25:
layer2/AtomInfo.h: In function ‘SideChainHelperMarkNonCartoonBonded(bool*, ObjectMolecule const*, CoordSet const*, bool, bool)’:
layer2/AtomInfo.h:505:5: note: ‘out’ was declared here
505 | V out;
| ^~~
In function ‘SettingUniqueGetTypedValuePtr(PyMOLGlobals*, int, int, int, bool*)’,
inlined from ‘SettingUniqueGetIfDefined<bool>(PyMOLGlobals*, int, int, bool*)bool’ at layer1/Setting.h:447:39,
inlined from ‘AtomSettingGetIfDefined<bool, AtomInfoType const>(PyMOLGlobals*, AtomInfoType const*, int, bool*)bool’ at layer2/AtomInfo.h:496:33,
inlined from ‘AtomSettingGetWD<bool, AtomInfoType const>(PyMOLGlobals*, AtomInfoType const*, int, bool)bool’ at layer2/AtomInfo.h:506:36,
inlined from ‘SideChainHelperMarkNonCartoonBonded(bool*, ObjectMolecule const*, CoordSet const*, bool, bool)’ at layer2/SideChainHelper.cpp:49:26:
layer1/Setting.h:436:11: warning: ‘out’ may be used uninitialized [-Wmaybe-uninitialized]
436 | int i = *out;
| ^~~~
layer2/AtomInfo.h: In function ‘SideChainHelperMarkNonCartoonBonded(bool*, ObjectMolecule const*, CoordSet const*, bool, bool)’:
layer2/AtomInfo.h:505:5: note: ‘out’ was declared here
505 | V out;
| ^~~
In function ‘SettingUniqueGetTypedValuePtr(PyMOLGlobals*, int, int, int, bool*)’,
inlined from ‘SettingUniqueGetIfDefined<bool>(PyMOLGlobals*, int, int, bool*)bool’ at layer1/Setting.h:447:39,
inlined from ‘AtomSettingGetIfDefined<bool, AtomInfoType const>(PyMOLGlobals*, AtomInfoType const*, int, bool*)bool’ at layer2/AtomInfo.h:496:33,
inlined from ‘AtomSettingGetWD<bool, AtomInfoType const>(PyMOLGlobals*, AtomInfoType const*, int, bool)bool’ at layer2/AtomInfo.h:506:36,
inlined from ‘SideChainHelperMarkNonCartoonBonded(bool*, ObjectMolecule const*, CoordSet const*, bool, bool)’ at layer2/SideChainHelper.cpp:55:26:
layer1/Setting.h:436:11: warning: ‘out’ may be used uninitialized [-Wmaybe-uninitialized]
436 | int i = *out;
| ^~~~
layer2/AtomInfo.h: In function ‘SideChainHelperMarkNonCartoonBonded(bool*, ObjectMolecule const*, CoordSet const*, bool, bool)’:
layer2/AtomInfo.h:505:5: note: ‘out’ was declared here
505 | V out;
| ^~~
In function ‘SettingUniqueGetTypedValuePtr(PyMOLGlobals*, int, int, int, bool*)’,
inlined from ‘SettingUniqueGetIfDefined<bool>(PyMOLGlobals*, int, int, bool*)bool’ at layer1/Setting.h:447:39,
inlined from ‘AtomSettingGetIfDefined<bool, AtomInfoType const>(PyMOLGlobals*, AtomInfoType const*, int, bool*)bool’ at layer2/AtomInfo.h:496:33,
inlined from ‘AtomSettingGetWD<bool, AtomInfoType const>(PyMOLGlobals*, AtomInfoType const*, int, bool)bool’ at layer2/AtomInfo.h:506:36,
inlined from ‘SideChainHelperMarkNonCartoonBonded(bool*, ObjectMolecule const*, CoordSet const*, bool, bool)’ at layer2/SideChainHelper.cpp:57:26:
layer1/Setting.h:436:11: warning: ‘out’ may be used uninitialized [-Wmaybe-uninitialized]
436 | int i = *out;
| ^~~~
layer2/AtomInfo.h: In function ‘SideChainHelperMarkNonCartoonBonded(bool*, ObjectMolecule const*, CoordSet const*, bool, bool)’:
layer2/AtomInfo.h:505:5: note: ‘out’ was declared here
505 | V out;
| ^~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/VFont.cpp -o build/temp.linux-x86_64-cpython-311/layer2/VFont.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer3/AtomIterators.cpp -o build/temp.linux-x86_64-cpython-311/layer3/AtomIterators.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer3/AtomIterators.cpp: In member function ‘virtual bool SeleAtomIterator::next()’:
layer3/AtomIterators.cpp:61:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
61 | while ((++a) < I->Table.size()) {
| ~~~~~~^~~~~~~~~~~~~~~~~
layer3/AtomIterators.cpp: In member function ‘virtual bool SeleCoordIterator::next()’:
layer3/AtomIterators.cpp:129:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
129 | for (a++; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer3/CifDataValueFormatter.cpp -o build/temp.linux-x86_64-cpython-311/layer3/CifDataValueFormatter.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer3/Editor.cpp -o build/temp.linux-x86_64-cpython-311/layer3/Editor.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer3/Editor.cpp: In function ‘pymol::Result<> EditorSelect(PyMOLGlobals*, const char*, const char*, const char*, const char*, int, int, int)’:
layer3/Editor.cpp:776:7: warning: variable ‘result’ set but not used [-Wunused-but-set-variable]
776 | int result = false;
| ^~~~~~
layer3/Editor.cpp: In function ‘EditorDefineExtraPks(PyMOLGlobals*)’:
layer3/Editor.cpp:335:29: warning: ‘%s’ directive writing up to 255 bytes into a region of size 249 [-Wformat-overflow=]
335 | sprintf(buffer, "(byres %s)", name);
| ^~ ~~~~
layer3/Editor.cpp:335:12: note: ‘sprintf’ output between 9 and 264 bytes into a destination of size 256
335 | sprintf(buffer, "(byres %s)", name);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Editor.cpp:337:31: warning: ‘%s’ directive writing up to 255 bytes into a region of size 247 [-Wformat-overflow=]
337 | sprintf(buffer, "(bychain %s)", name);
| ^~ ~~~~
layer3/Editor.cpp:337:12: note: ‘sprintf’ output between 11 and 266 bytes into a destination of size 256
337 | sprintf(buffer, "(bychain %s)", name);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Editor.cpp:339:32: warning: ‘%s’ directive writing up to 255 bytes into a region of size 246 [-Wformat-overflow=]
339 | sprintf(buffer, "(byobject %s)", name);
| ^~ ~~~~
layer3/Editor.cpp:339:12: note: ‘sprintf’ output between 12 and 267 bytes into a destination of size 256
339 | sprintf(buffer, "(byobject %s)", name);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Editor.cpp: In function ‘EditorPrepareDrag(PyMOLGlobals*, pymol::CObject*, int, int, int, int)’:
layer3/Editor.cpp:1933:29: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 236 [-Wformat-truncation=]
1933 | " Editor: grabbing (%s).", name ENDFB(G);
| ^~ ~~~~
In file included from layer1/Ortho.h:32,
from layer1/ButMode.h:20,
from layer3/Editor.cpp:28:
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 22 and 277 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer3/Executive.cpp -o build/temp.linux-x86_64-cpython-311/layer3/Executive.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer3/MovieScene.cpp -o build/temp.linux-x86_64-cpython-311/layer3/MovieScene.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer3/Executive.cpp: In function ‘pymol::Result<> ExecutiveIsosurfaceEtc(PyMOLGlobals*, const char*, const char*, float, const char*, float, int, float, int, int, int, int)’:
layer3/Executive.cpp:986:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
986 | if(map_state >= mapObj->State.size())
| ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp: In function ‘pymol::Result<> ExecutiveIsomeshEtc(PyMOLGlobals*, const char*, const char*, float, const char*, float, int, float, int, int, int, float)’:
layer3/Executive.cpp:1132:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1132 | if(map_state >= mapObj->State.size())
| ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp: In function ‘pymol::Result<> ExecutiveVolume(PyMOLGlobals*, const char*, const char*, float, const char*, float, int, float, int, int)’:
layer3/Executive.cpp:1305:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1305 | if(map_state >= mapObj->State.size())
| ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/13/cassert:44,
from /usr/include/glm/detail/func_exponential.inl:8,
from /usr/include/glm/exponential.hpp:110,
from /usr/include/glm/detail/func_geometric.inl:1,
from /usr/include/glm/geometric.hpp:116,
from /usr/include/glm/detail/func_matrix.inl:1,
from /usr/include/glm/matrix.hpp:161,
from /usr/include/glm/detail/type_mat2x2.inl:1,
from /usr/include/glm/detail/type_mat2x2.hpp:176,
from /usr/include/glm/ext/matrix_double2x2.hpp:5,
from /usr/include/glm/mat2x2.hpp:5,
from /usr/include/glm/glm.hpp:119,
from layer3/Executive.cpp:114:
layer3/Executive.cpp: In function ‘pymol::Result<> ExecutiveSmooth(PyMOLGlobals*, const char*, int, int, int, int, int, int, float, bool)’:
layer3/Executive.cpp:6095:17: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare]
6095 | assert(n_atom == SelectorCountAtoms(G, sele, cStateAll));
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp:6155:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare]
6155 | for (int c = 0; c < n_atom; ++c) {
| ~~^~~~~~~~
layer3/Executive.cpp: In function ‘pymol::Result<> ExecutiveMapSet(PyMOLGlobals*, const char*, int, const char*, int, int, int, int)’:
layer3/Executive.cpp:6325:34: warning: comparison of integer expressions of different signedness: ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
6325 | if(obj->State.size() > max_n_state)
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
layer3/Executive.cpp:6436:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
6436 | if(src_state < obj->State.size()) {
| ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp: In function ‘float ExecutiveRMSPairs(PyMOLGlobals*, const std::vector<SelectorTmp>&, int, bool)’:
layer3/Executive.cpp:11035:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
11035 | for(a = 0; a < pairs; a++) {
| ~~^~~~~~~
layer3/Executive.cpp:11040:10: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
11040 | if(a < (pairs - 1))
| ~~^~~~~~~~~~~~~
layer3/Executive.cpp: In function ‘pymol::Result<> ExecutiveColor(PyMOLGlobals*, const char*, const char*, int, int)’:
layer3/Executive.cpp:12401:7: warning: variable ‘ok’ set but not used [-Wunused-but-set-variable]
12401 | int ok = false;
| ^~
layer3/Executive.cpp: In function ‘void ExecutiveSymExp(PyMOLGlobals*, const char*, const char*, const char*, float, int, int)’:
layer3/Executive.cpp:14066:40: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
14066 | for (unsigned idx = 0; idx < cs->NIndex; ++idx) {
| ~~~~^~~~~~~~~~~~
layer3/Executive.cpp:14093:40: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
14093 | for (unsigned atm = 0; atm < new_obj->NAtom; ++atm) {
| ~~~~^~~~~~~~~~~~~~~~
In file included from layer3/Executive.cpp:51:
layer3/Executive.cpp: In lambda function:
layer0/ListMacros.h:100:9: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
100 | else \
| ^~~~
layer0/ListMacros.h:141:4: note: in expansion of macro ‘ListDetach’
141 | ListDetach(List,copy,Link,ElemType); \
| ^~~~~~~~~~
layer3/Executive.cpp:14194:7: note: in expansion of macro ‘ListDelete’
14194 | ListDelete(I->Spec, rec, next, SpecRec); /* NOTE: order N in list length! TO FIX */
| ^~~~~~~~~~
layer0/ListMacros.h:102:11: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
102 | (Elem)->Link = NULL; \
| ^
layer0/ListMacros.h:141:4: note: in expansion of macro ‘ListDetach’
141 | ListDetach(List,copy,Link,ElemType); \
| ^~~~~~~~~~
layer3/Executive.cpp:14194:7: note: in expansion of macro ‘ListDelete’
14194 | ListDelete(I->Spec, rec, next, SpecRec); /* NOTE: order N in list length! TO FIX */
| ^~~~~~~~~~
layer3/Executive.cpp: In lambda function:
layer0/ListMacros.h:100:9: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
100 | else \
| ^~~~
layer0/ListMacros.h:141:4: note: in expansion of macro ‘ListDetach’
141 | ListDetach(List,copy,Link,ElemType); \
| ^~~~~~~~~~
layer3/Executive.cpp:14206:7: note: in expansion of macro ‘ListDelete’
14206 | ListDelete(I->Spec, rec, next, SpecRec); /* NOTE: order N in list length! TO FIX */
| ^~~~~~~~~~
layer0/ListMacros.h:102:11: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
102 | (Elem)->Link = NULL; \
| ^
layer0/ListMacros.h:141:4: note: in expansion of macro ‘ListDetach’
141 | ListDetach(List,copy,Link,ElemType); \
| ^~~~~~~~~~
layer3/Executive.cpp:14206:7: note: in expansion of macro ‘ListDelete’
14206 | ListDelete(I->Spec, rec, next, SpecRec); /* NOTE: order N in list length! TO FIX */
| ^~~~~~~~~~
layer3/Executive.cpp: In member function ‘virtual int CExecutive::click(int, int, int, int)’:
layer3/Executive.cpp:14873:68: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
14873 | if(((panel->is_group) && (((xx) - 1) / DIP2PIXEL(8)) > (panel->nest_level + 1)) ||
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp:14874:69: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
14874 | ((!panel->is_group) && (((xx) - 1) / DIP2PIXEL(8)) > panel->nest_level)) {
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp: In member function ‘virtual int CExecutive::release(int, int, int, int)’:
layer3/Executive.cpp:15162:65: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
15162 | (((panel->is_group) && ((xx - 1) / DIP2PIXEL(8)) > (panel->nest_level + 1)) ||
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp:15163:66: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
15163 | ((!panel->is_group) && ((xx - 1) / DIP2PIXEL(8)) > panel->nest_level))) {
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp: In member function ‘virtual int CExecutive::drag(int, int, int)’:
layer3/Executive.cpp:15304:70: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
15304 | if(((panel->is_group) && ((xx - 1) / DIP2PIXEL(8)) > (panel->nest_level + 1)) ||
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp:15305:71: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
15305 | ((!panel->is_group) && ((xx - 1) / DIP2PIXEL(8)) > panel->nest_level)) {
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp:15340:71: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
15340 | if(!((panel->is_group) && ((xx - 1) / DIP2PIXEL(8)) > (panel->nest_level + 1))) {
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer0/OOMac.h:22,
from layer3/Executive.cpp:37:
layer3/Executive.cpp: In function ‘void ExecutiveFree(PyMOLGlobals*)’:
layer0/MemoryDebug.h:86:32: warning: deleting object of polymorphic class type ‘CExecutive’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
86 | #define DeleteP(ptr) {if(ptr) {delete ptr;ptr=NULL;}}
layer3/Executive.cpp:16294:3: note: in expansion of macro ‘DeleteP’
16294 | DeleteP(G->Executive);
| ^~~~~~~
layer3/Executive.cpp: In function ‘pymol::Result<> ExecutiveSliceNew(PyMOLGlobals*, const char*, const char*, int, int)’:
layer3/Executive.cpp:16607:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
16607 | if(map_state >= mapObj->State.size())
| ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
In file included from layer3/Executive.h:38,
from layer3/Executive.cpp:38:
layer0/TrackerList.h: In instantiation of ‘pymol::TrackerAdapter<T>::TrackerAdapterIterator<IsConst>::TrackerAdapterIterator(CTracker*, int) [with bool IsConst = false; T = SpecRec]’:
layer0/TrackerList.h:99:29: required from ‘pymol::TrackerAdapter<T>::iterator pymol::TrackerAdapter<T>::begin() [with T = SpecRec; iterator = pymol::TrackerAdapter<SpecRec>::TrackerAdapterIterator<false>]’
layer3/Executive.cpp:202:62: required from here
layer0/TrackerList.h:80:15: warning: ‘pymol::TrackerAdapter<SpecRec>::TrackerAdapterIterator<false>::m_tracker’ will be initialized after [-Wreorder]
80 | CTracker* m_tracker;
| ^~~~~~~~~
layer0/TrackerList.h:79:9: warning: ‘int pymol::TrackerAdapter<SpecRec>::TrackerAdapterIterator<false>::m_iter_id’ [-Wreorder]
79 | int m_iter_id = -1;
| ^~~~~~~~~
layer0/TrackerList.h:35:14: warning: when initialized here [-Wreorder]
35 | explicit TrackerAdapterIterator(CTracker* tracker, int list_id)
| ^~~~~~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer3/PlugIOManager.cpp -o build/temp.linux-x86_64-cpython-311/layer3/PlugIOManager.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer3/Executive.cpp: In function ‘ExecutiveRemoveAtoms(PyMOLGlobals*, char const*, int)’:
layer3/Executive.cpp:9007:58: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size between 207 and 217 [-Wformat-truncation=]
9007 | " Remove: eliminated %d atoms in model \"%s\".\n",
| ^~
In file included from layer1/Ortho.h:32,
from layer3/ExecutiveDef.h:3,
from layer3/Executive.h:29:
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 42 and 307 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp: In function ‘ExecutiveSetBondSettingFromString(PyMOLGlobals*, int, char const*, char const*, char const*, int, int, int)’:
layer3/Executive.cpp:11424:28: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
11424 | " Setting: %s set for %d bonds in object \"%s\".\n",
| ^~
11425 | name, nSet, obj->Name ENDF(G);
| ~~~~
layer3/Executive.cpp:11424:17: note: using the range [-2147483648, 2147483647] for directive argument
11424 | " Setting: %s set for %d bonds in object \"%s\".\n",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer0/Feedback.h:282:53: note: ‘snprintf’ output between 42 and 561 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp: In function ‘ExecutiveGetBondSetting(PyMOLGlobals*, int, char*, char const*, int, int, int)’:
layer3/Executive.cpp:11505:26: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
11505 | " Getting: %s for %d bonds in object \"%s\".\n",
| ^~
11506 | name, nSet, obj->Name ENDF(G);
| ~~~~
layer3/Executive.cpp:11505:15: note: using the range [-2147483648, 2147483647] for directive argument
11505 | " Getting: %s for %d bonds in object \"%s\".\n",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer0/Feedback.h:282:53: note: ‘snprintf’ output between 38 and 557 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp: In function ‘ExecutiveSetBondSetting(PyMOLGlobals*, int, _object*, char const*, char const*, int, int, int)’:
layer3/Executive.cpp:11605:62: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 217 [-Wformat-truncation=]
11605 | " Setting: %s set for %d bonds in object \"%s\".\n",
| ^~
layer0/Feedback.h:282:53: note: ‘snprintf’ output 42 or more bytes (assuming 297) into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp: In function ‘ExecutiveUnsetBondSetting(PyMOLGlobals*, int, char const*, char const*, int, int, int)’:
layer3/Executive.cpp:11684:26: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
11684 | " Setting: %s unset for %d bonds in object \"%s\".\n",
| ^~
11685 | name, nSet, rec->obj->Name ENDF(G);
| ~~~~
layer3/Executive.cpp:11684:15: note: using the range [-2147483648, 2147483647] for directive argument
11684 | " Setting: %s unset for %d bonds in object \"%s\".\n",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer0/Feedback.h:282:53: note: ‘snprintf’ output between 44 and 563 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp: In function ‘ExecutiveSetObjSettingFromString(PyMOLGlobals*, int, char const*, pymol::CObject*, int, int, int)’:
layer3/Executive.cpp:12226:30: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
12226 | " Setting: %s set to %s in object \"%s\", state %d.\n",
| ^~
12227 | name, value2, obj->Name, state + 1 ENDF(G);
| ~~~~
layer3/Executive.cpp:12226:19: note: directive argument in the range [1, 2147483647]
12226 | " Setting: %s set to %s in object \"%s\", state %d.\n",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer0/Feedback.h:282:53: note: ‘snprintf’ output between 43 and 1584 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:12218:30: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
12218 | " Setting: %s set to %s in object \"%s\".\n",
| ^~
12219 | name, value2, obj->Name ENDF(G);
| ~~~~
layer0/Feedback.h:282:53: note: ‘snprintf’ output between 34 and 1566 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:12197:29: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
12197 | PRINTF " Setting: %s set to %s.\n", name, value2 ENDF(G);
| ^~ ~~~~
layer0/Feedback.h:282:53: note: ‘snprintf’ output between 21 and 1298 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp: In function ‘ExecutiveSetSettingFromString(PyMOLGlobals*, int, char const*, char const*, int, int, int)’:
layer3/Executive.cpp:12129:36: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
12129 | " Setting: %s set for %d atoms in object \"%s\".\n",
| ^~
12130 | name, op.i4, rec->obj->Name ENDF(G);
| ~~~~
layer0/Feedback.h:282:53: note: ‘snprintf’ output between 42 and 561 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:12097:32: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
12097 | " Setting: %s set to %s in %d objects, state %d.\n",
| ^~
12098 | name, value2, nObj, state + 1 ENDF(G);
| ~~~~
layer3/Executive.cpp:12097:21: note: using the range [-2147483648, 2147483647] for directive argument
12097 | " Setting: %s set to %s in %d objects, state %d.\n",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp:12097:21: note: directive argument in the range [1, 2147483647]
layer0/Feedback.h:282:53: note: ‘snprintf’ output between 43 and 1339 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:12094:32: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
12094 | " Setting: %s set to %s in %d objects.\n", name, value2, nObj ENDF(G);
| ^~ ~~~~
layer3/Executive.cpp:12094:21: note: using the range [-2147483648, 2147483647] for directive argument
12094 | " Setting: %s set to %s in %d objects.\n", name, value2, nObj ENDF(G);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer0/Feedback.h:282:53: note: ‘snprintf’ output between 34 and 1321 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:12161:36: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
12161 | " Setting: %s set to %s in object \"%s\", state %d.\n",
| ^~
12162 | name, value2, rec->obj->Name, state + 1 ENDF(G);
| ~~~~
layer3/Executive.cpp:12161:25: note: directive argument in the range [1, 2147483647]
12161 | " Setting: %s set to %s in object \"%s\", state %d.\n",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer0/Feedback.h:282:53: note: ‘snprintf’ output between 43 and 1584 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:12153:36: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
12153 | " Setting: %s set to %s in object \"%s\".\n",
| ^~
12154 | name, value2, rec->obj->Name ENDF(G);
| ~~~~
layer0/Feedback.h:282:53: note: ‘snprintf’ output between 34 and 1566 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:12057:29: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
12057 | PRINTF " Setting: %s set to %s.\n", name, value2 ENDF(G);
| ^~ ~~~~
layer0/Feedback.h:282:53: note: ‘snprintf’ output between 21 and 1298 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/PlugIOManager.cpp: In function ‘ObjectMap* PlugIOManagerLoadVol(PyMOLGlobals*, ObjectMap*, const char*, int, int, const char*)’:
layer3/PlugIOManager.cpp:416:34: warning: comparison of integer expressions of different signedness: ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
416 | if(obj->State.size() <= state) {
| ~~~~~~~~~~~~~~~~~~^~~~~~~~
In file included from /usr/include/c++/13/cassert:44,
from layer0/Field.h:24,
from layer0/Isosurf.h:24,
from layer2/ObjectMap.h:25,
from layer3/PlugIOManager.h:23,
from layer3/PlugIOManager.cpp:24:
layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = float; SizeTs = {int, int, int}]’:
layer0/Field.h:114:19: required from ‘T& CField::get(SizeTs ...) [with T = float; SizeTs = {int, int, int}]’
layer3/PlugIOManager.cpp:541:21: required from here
layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare]
100 | assert(sizeof...(pos) <= n_dim());
| ~~~~~~~~~~~~~~~^~~~~~~~~~
layer3/PlugIOManager.cpp: In function ‘PlugIOManagerLoad’:
layer3/PlugIOManager.cpp:946:65: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 200 [-Wformat-truncation=]
946 | " PlugIOManagerLoad: can't load trajectory into object '%s'\n", obj->Name ENDFB(G);
| ^~
In file included from /usr/include/stdio.h:906,
from /usr/include/python3.11/Python.h:24,
from layer0/os_python.h:34,
from layer3/PlugIOManager.cpp:20:
In function ‘snprintf’,
inlined from ‘PlugIOManagerLoad’ at layer3/PlugIOManager.cpp:945:7:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 58 and 313 bytes into a destination of size 255
54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
55 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
56 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
layer3/Executive.cpp: In function ‘ExecutiveSetSymmetry(PyMOLGlobals*, pymol::zstring_view, int, CSymmetry const&, bool)’:
layer3/Executive.cpp:5951:43: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 202 [-Wformat-truncation=]
5951 | " %s-Details: Updated symmetry for '%s'\n", __func__, obj->Name ENDFB(G);
| ^~
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 56 and 311 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:5942:46: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 199 [-Wformat-truncation=]
5942 | " %s-Warning: Cannot set symmetry for '%s' (type %s)\n", __func__,
| ^~
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 84 and 339 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer3/RingFinder.cpp -o build/temp.linux-x86_64-cpython-311/layer3/RingFinder.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer3/Executive.cpp: In function ‘ExecutiveSpectrum(PyMOLGlobals*, pymol::zstring_view, pymol::zstring_view, float, float, int, int, pymol::zstring_view, int, int, int)’:
layer3/Executive.cpp:4764:24: warning: ‘strncpy’ specified bound 8 equals destination size [-Wstringop-truncation]
4764 | strncpy(value_s, raw_ptr, sizeof(value_e));
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/RingFinder.cpp: In member function ‘void AbstractRingFinder::recursion(int, int)’:
layer3/RingFinder.cpp:23:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
23 | } else if (depth < m_indices.size() - 1) {
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer3/Seeker.cpp -o build/temp.linux-x86_64-cpython-311/layer3/Seeker.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer3/Executive.cpp: In function ‘ExecutiveBond(PyMOLGlobals*, char const*, char const*, int, int, int, pymol::zstring_view)’:
layer3/Executive.cpp:9358:53: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size between 214 and 224 [-Wformat-truncation=]
9358 | " Bond: %d bonds added to model \"%s\".\n", cnt, rec->obj->Name
| ^~
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 35 and 300 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:9371:67: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size between 200 and 210 [-Wformat-truncation=]
9371 | " Valence: %d bond valences adjusted in model \"%s\".\n", cnt,
| ^~
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 49 and 314 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:9383:59: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size between 208 and 218 [-Wformat-truncation=]
9383 | " Unbond: %d bonds removed from model \"%s\".\n",
| ^~
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 41 and 306 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Seeker.cpp: In function ‘void SeekerRefresh(PyMOLGlobals*, std::vector<CSeqRow>&)’:
layer3/Seeker.cpp:485:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
485 | for(int b = 0; b < nRow; b++) {
| ~~^~~~~~
layer3/Seeker.cpp: In function ‘void SeekerUpdate(PyMOLGlobals*)’:
layer3/Seeker.cpp:1150:23: warning: comparison of integer expressions of different signedness: ‘ov_size’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
1150 | if(row->len < min_pad) {
| ~~~~~~~~~^~~~~~~~~
layer3/Seeker.cpp:1186:23: warning: comparison of integer expressions of different signedness: ‘ov_size’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
1186 | if(row->len < min_pad) {
| ~~~~~~~~~^~~~~~~~~
layer3/Seeker.cpp: In lambda function:
layer3/Seeker.cpp:1248:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
1248 | for(int i = 0; i < str_size; i++){
| ~~^~~~~~~~~~
layer3/Seeker.cpp: In function ‘void SeekerUpdate(PyMOLGlobals*)’:
layer3/Seeker.cpp:1930:27: warning: comparison of integer expressions of different signedness: ‘ov_size’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
1930 | if(row->ext_len < stop)
| ~~~~~~~~~~~~~^~~~~~
In file included from layer0/vla.h:7,
from layer1/Symmetry.h:26,
from layer1/PyMOLObject.h:27,
from layer1/Seq.h:21,
from layer3/Seeker.cpp:26:
layer3/Seeker.cpp: In function ‘void SeekerFree(PyMOLGlobals*)’:
layer0/MemoryDebug.h:86:32: warning: deleting object of polymorphic class type ‘CSeeker’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
86 | #define DeleteP(ptr) {if(ptr) {delete ptr;ptr=NULL;}}
layer3/Seeker.cpp:1964:3: note: in expansion of macro ‘DeleteP’
1964 | DeleteP(G->Seeker);
| ^~~~~~~
layer3/Executive.cpp: In function ‘ExecutiveSetSetting(PyMOLGlobals*, int, _object*, pymol::zstring_view, int, int, int)’:
layer3/Executive.cpp:11877:70: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 217 [-Wformat-truncation=]
11877 | " Setting: %s set for %d atoms in object \"%s\".\n",
| ^~
layer0/Feedback.h:282:53: note: ‘snprintf’ output 42 or more bytes (assuming 297) into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:11788:42: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 237 [-Wformat-truncation=]
11788 | " Setting: %s set to %s in %d objects, state %d.\n",
| ^~
11789 | name, value, nObj, state + 1 ENDF(G);
| ~~~~~
layer3/Executive.cpp:11788:21: note: using the range [-2147483648, 2147483647] for directive argument
11788 | " Setting: %s set to %s in %d objects, state %d.\n",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp:11788:21: note: directive argument in the range [1, 2147483647]
layer0/Feedback.h:282:53: note: ‘snprintf’ output 43 or more bytes (assuming 1075) into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:11785:42: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 237 [-Wformat-truncation=]
11785 | " Setting: %s set to %s in %d objects.\n", name, value, nObj ENDF(G);
| ^~ ~~~~~
layer3/Executive.cpp:11785:21: note: using the range [-2147483648, 2147483647] for directive argument
11785 | " Setting: %s set to %s in %d objects.\n", name, value, nObj ENDF(G);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer0/Feedback.h:282:53: note: ‘snprintf’ output 34 or more bytes (assuming 1057) into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:11909:46: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 237 [-Wformat-truncation=]
11909 | " Setting: %s set to %s in object \"%s\", state %d.\n",
| ^~
11910 | name, value, rec->obj->Name, state + 1 ENDF(G);
| ~~~~~
layer3/Executive.cpp:11909:25: note: directive argument in the range [1, 2147483647]
11909 | " Setting: %s set to %s in object \"%s\", state %d.\n",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer0/Feedback.h:282:53: note: ‘snprintf’ output 43 or more bytes (assuming 1330) into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:11902:46: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 237 [-Wformat-truncation=]
11902 | " Setting: %s set to %s in object \"%s\".\n",
| ^~
11903 | name, value, rec->obj->Name ENDF(G);
| ~~~~~
layer0/Feedback.h:282:53: note: ‘snprintf’ output 34 or more bytes (assuming 1312) into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:11744:39: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 237 [-Wformat-truncation=]
11744 | PRINTF " Setting: %s set to %s.\n", name, value ENDF(G);
| ^~ ~~~~~
layer0/Feedback.h:282:53: note: ‘snprintf’ output 21 or more bytes (assuming 1044) into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp: In function ‘ExecutiveUnsetSetting(PyMOLGlobals*, int, pymol::zstring_view, int, int, int)’:
layer3/Executive.cpp:12338:68: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 215 [-Wformat-truncation=]
12338 | " Setting: %s unset for %d atoms in object \"%s\".\n",
| ^~
layer0/Feedback.h:282:53: note: ‘snprintf’ output 44 or more bytes (assuming 299) into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:12360:57: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 227 [-Wformat-truncation=]
12360 | " Setting: %s unset in object \"%s\", state %d.\n",
| ^~
layer3/Executive.cpp:12360:25: note: directive argument in the range [1, 2147483647]
12360 | " Setting: %s unset in object \"%s\", state %d.\n",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer0/Feedback.h:282:53: note: ‘snprintf’ output 41 or more bytes (assuming 305) into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:12354:57: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 227 [-Wformat-truncation=]
12354 | " Setting: %s unset in object \"%s\".\n",
| ^~
layer0/Feedback.h:282:53: note: ‘snprintf’ output 32 or more bytes (assuming 287) into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer3/Selector.cpp -o build/temp.linux-x86_64-cpython-311/layer3/Selector.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer3/Executive.cpp: In function ‘ExecutiveManageObject(PyMOLGlobals*, pymol::CObject*, int, int)’:
layer3/Executive.cpp:14447:37: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 229 [-Wformat-truncation=]
14447 | " Executive-Warning: name \"%s\" collides with a selection language keyword.\n",
| ^~
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 73 and 328 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:14442:36: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 230 [-Wformat-truncation=]
14442 | " Executive: object name \"%s\" is illegal -- renamed to 'all_'.\n", obj->Name
| ^~
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 61 and 316 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:14473:11: warning: ‘strcpy’ offset 0 is out of the bounds [0, 0] [-Warray-bounds=]
14473 | strcpy(rec->name, obj->Name);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp: In function ‘ExecutiveCopy(PyMOLGlobals*, char const*, char const*, int)’:
layer3/Executive.cpp:9665:25: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 236 [-Wformat-truncation=]
9665 | " Executive: object %s created.\n", oDst->Name ENDFB(G);
| ^~
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 30 and 285 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp: In member function ‘CExecutive::drag(int, int, int)’:
layer3/Executive.cpp:15471:55: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 1013 [-Wformat-overflow=]
15471 | sprintf(I->ReorderLog, "cmd.order(\"%s\",location=\"%s\")\n",
| ^~
15472 | order_input, (location == -2) ? "upper" : "current");
| ~~~~~~~~~~~
layer3/Executive.cpp:15471:26: note: ‘sprintf’ output between 32 and 1057 bytes into a destination of size 1024
15471 | sprintf(I->ReorderLog, "cmd.order(\"%s\",location=\"%s\")\n",
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
15472 | order_input, (location == -2) ? "upper" : "current");
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In member function ‘virtual bool SelectorAtomIterator::next()’:
layer3/Selector.cpp:185:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
185 | if ((++a) >= selector->Table.size())
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘bool SelectorIsSelectionDiscrete(PyMOLGlobals*, SelectorID_t, bool)’:
layer3/Selector.cpp:1028:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1028 | for(int a = cNDummyAtoms; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘int SelectorClassifyAtoms(PyMOLGlobals*, int, int, ObjectMolecule*)’:
layer3/Selector.cpp:1082:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1082 | while(a < I->Table.size()) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:1106:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1106 | while(a1 < I->Table.size()) {
| ~~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘const char* SelectorGetNameFromIndex(PyMOLGlobals*, SelectorID_t)’:
layer3/Selector.cpp:1519:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<SelectionInfoRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1519 | for(int a = 1; a < I->Info.size(); a++) {
| ~~^~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘int SelectorAssignSS(PyMOLGlobals*, int, int, int, int, ObjectMolecule*, int)’:
layer3/Selector.cpp:1653:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1653 | for(a = cNDummyAtoms; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:1680:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1680 | while(a1 < I->Table.size()) {
| ~~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:1874:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1874 | for(a = cNDummyAtoms; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘PyObject* SelectorColorectionGet(PyMOLGlobals*, const char*)’:
layer3/Selector.cpp:2687:18: warning: comparison of integer expressions of different signedness: ‘ov_size’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2687 | for(b = 0; b < n_used; b++) {
| ~~^~~~~~~~
layer3/Selector.cpp:2703:16: warning: comparison of integer expressions of different signedness: ‘ov_size’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2703 | for(a = 0; a < n_used; a++) {
| ~~^~~~~~~~
layer3/Selector.cpp:2715:18: warning: comparison of integer expressions of different signedness: ‘ov_size’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2715 | for(b = 0; b < n_used; b++) {
| ~~^~~~~~~~
layer3/Selector.cpp: In function ‘int SelectorColorectionApply(PyMOLGlobals*, PyObject*, const char*)’:
layer3/Selector.cpp:2763:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘ov_size’ {aka ‘long unsigned int’} [-Wsign-compare]
2763 | for(b = 0; b < n_used; b++) { /* update selection indices */
| ~~^~~~~~~~
layer3/Selector.cpp:2768:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
2768 | for(a = cNDummyAtoms; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:2772:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘ov_size’ {aka ‘long unsigned int’} [-Wsign-compare]
2772 | for(b = 0; b < n_used; b++) {
| ~~^~~~~~~~
layer3/Selector.cpp: In function ‘PyObject* SelectorSecretsAsPyList(PyMOLGlobals*)’:
layer3/Selector.cpp:2873:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<SelectionInfoRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
2873 | for(int a = 0; a < I->Info.size(); a++) {
| ~~^~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘PyObject* SelectorAsPyList(PyMOLGlobals*, SelectorID_t)’:
layer3/Selector.cpp:2952:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
2952 | for(a = cNDummyAtoms; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘int SelectorCountStates(PyMOLGlobals*, int)’:
layer3/Selector.cpp:3446:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
3446 | for(a = cNDummyAtoms; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘int SelectorCheckIntersection(PyMOLGlobals*, int, int)’:
layer3/Selector.cpp:3470:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
3470 | for(int a = cNDummyAtoms; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘int SelectorCountAtoms(PyMOLGlobals*, int, int)’:
layer3/Selector.cpp:3488:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
3488 | for(int a = cNDummyAtoms; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘void SelectorSetDeleteFlagOnSelectionInObject(PyMOLGlobals*, int, ObjectMolecule*, signed char)’:
layer3/Selector.cpp:3503:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
3503 | for(int a = cNDummyAtoms; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘int* SelectorGetIndexVLAImpl(PyMOLGlobals*, CSelector*, SelectorID_t)’:
layer3/Selector.cpp:3589:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
3589 | for(a = cNDummyAtoms; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘void SelectorLogSele(PyMOLGlobals*, const char*)’:
layer3/Selector.cpp:3648:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
3648 | for(a = cNDummyAtoms; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘ObjectMolecule* SelectorGetSingleObjectMolecule(PyMOLGlobals*, SelectorID_t)’:
layer3/Selector.cpp:3813:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
3813 | for (a = cNDummyAtoms; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘ObjectMolecule* SelectorGetFirstObjectMolecule(PyMOLGlobals*, SelectorID_t)’:
layer3/Selector.cpp:3843:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
3843 | for (a = cNDummyAtoms; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘ObjectMolecule** SelectorGetObjectMoleculeVLA(PyMOLGlobals*, SelectorID_t)’:
layer3/Selector.cpp:3867:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
3867 | for(a = cNDummyAtoms; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘int SelectorSubdivide(PyMOLGlobals*, const char*, SelectorID_t, SelectorID_t, SelectorID_t, SelectorID_t, const char*, const char*, int*)’:
layer3/Selector.cpp:4266:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
4266 | for(a = 0; a < I->Table.size(); a++)
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘int SelectorGetSeleNCSet(PyMOLGlobals*, SelectorID_t)’:
layer3/Selector.cpp:4570:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
4570 | for(a = cNDummyAtoms; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘int SelectorGetArrayNCSet(PyMOLGlobals*, const sele_array_t&, int)’:
layer3/Selector.cpp:4600:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
4600 | for(a = start; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘int SelectorMapMaskVDW(PyMOLGlobals*, int, ObjectMapState*, float, int)’:
layer3/Selector.cpp:4761:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
4761 | for(a = 0; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘int SelectorMapGaussian(PyMOLGlobals*, int, ObjectMapState*, float, int, int, int, int, float)’:
layer3/Selector.cpp:5121:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
5121 | for(a = 0; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:5165:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
5165 | for(a = 0; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘int SelectorMapCoulomb(PyMOLGlobals*, int, ObjectMapState*, float, int, int, int, float)’:
layer3/Selector.cpp:5373:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
5373 | for(a = cNDummyAtoms; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘int SelectorCreateObjectMolecule(PyMOLGlobals*, SelectorID_t, const char*, int, int, int, int, int, int, int)’:
layer3/Selector.cpp:6062:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
6062 | if(ob)
| ^~
layer3/Selector.cpp:6066:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
6066 | SelectorUpdateTable(G, source, -1);
| ^~~~~~~~~~~~~~~~~~~
layer3/Selector.cpp:6077:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
6077 | for(a = cNDummyAtoms; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In lambda function:
layer3/Selector.cpp:6103:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
6103 | for(a = cNDummyAtoms; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:6133:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMolecule*>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
6133 | for(a = cNDummyModels; a < I->Obj.size(); a++) { /* find bonds wholly contained in the selection */
| ~~^~~~~~~~~~~~~~~
layer3/Selector.cpp:6159:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
6159 | for(a = cNDummyAtoms; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:6200:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
6200 | for(a = cNDummyAtoms; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:6224:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
6224 | for(a = cNDummyAtoms; a < I->Table.size(); a++) /* any selected atoms in this state? */
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘int SelectorEmbedSelection(PyMOLGlobals*, const int*, pymol::zstring_view, ObjectMolecule*, int, int)’:
layer3/Selector.cpp:6660:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
6660 | for(a = start; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘sele_array_t SelectorSelectFromTagDict(PyMOLGlobals*, const std::unordered_map<int, int>&)’:
layer3/Selector.cpp:6755:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
6755 | for(int a = cNDummyAtoms; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/13/cassert:44,
from layer0/Field.h:24,
from layer0/Isosurf.h:24,
from layer2/ObjectMap.h:25,
from layer3/Selector.h:27,
from layer3/Selector.cpp:39:
layer3/Selector.cpp: In function ‘void SelectorUpdateTableSingleObject(PyMOLGlobals*, ObjectMolecule*, int, bool)’:
layer3/Selector.cpp:6997:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
6997 | assert(c == I->Table.size());
| ~~^~~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘sele_array_t SelectorGetSeleArrayForAtomIndices(CSelector*, ObjectMolecule*, const int*, int, bool)’:
layer3/Selector.cpp:7010:26: warning: comparison of integer expressions of different signedness: ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
7010 | assert(I->Table.size() == cNDummyAtoms + obj->NAtom);
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘int SelectorModulate1(PyMOLGlobals*, EvalElem*, int)’:
layer3/Selector.cpp:7293:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
7293 | for (a = cNDummyAtoms; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7316:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
7316 | for(a = 0; ok && a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7379:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
7379 | for(a = 0; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7393:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
7393 | for(a = 0; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7416:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
7416 | for(a = 0; ok && a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7457:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
7457 | for(a = cNDummyAtoms; a < I->Table.size(); a++)
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘int SelectorSelect0(PyMOLGlobals*, EvalElem*)’:
layer3/Selector.cpp:7490:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
7490 | for(a = cNDummyAtoms; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7501:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
7501 | for(a = cNDummyAtoms; a < I->Table.size(); a++)
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7506:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
7506 | for(a = cNDummyAtoms; a < I->Table.size(); a++)
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7513:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
7513 | for(a = cNDummyAtoms; a < I->Table.size(); a++)
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7517:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
7517 | for(a = cNDummyAtoms; a < I->Table.size(); a++)
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7521:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
7521 | for(a = cNDummyAtoms; a < I->Table.size(); a++)
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7525:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
7525 | for(a = cNDummyAtoms; a < I->Table.size(); a++)
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7529:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
7529 | for(a = cNDummyAtoms; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7538:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
7538 | for(a = cNDummyAtoms; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7555:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
7555 | for(a = cNDummyAtoms; a < I->Table.size(); a++)
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7560:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
7560 | for(a = cNDummyAtoms; a < I->Table.size(); a++)
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7565:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
7565 | for(a = cNDummyAtoms; a < I->Table.size(); a++)
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7570:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
7570 | for(a = cNDummyAtoms; a < I->Table.size(); a++)
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7575:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
7575 | for(a = cNDummyAtoms; a < I->Table.size(); a++)
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7580:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
7580 | for(a = cNDummyAtoms; a < I->Table.size(); a++)
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7585:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
7585 | for(a = cNDummyAtoms; a < I->Table.size(); a++)
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7589:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
7589 | for(a = cNDummyAtoms; a < I->Table.size(); a++)
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7593:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
7593 | for(a = cNDummyAtoms; a < I->Table.size(); a++)
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7598:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
7598 | for(a = cNDummyAtoms; a < I->Table.size(); a++)
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7603:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
7603 | for(a = cNDummyAtoms; a < I->Table.size(); a++)
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7610:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
7610 | for(a = cNDummyAtoms; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7626:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
7626 | for(a = cNDummyAtoms; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7632:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
7632 | for(a = 0; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7641:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
7641 | for(a = 0; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7653:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
7653 | for(a = cNDummyAtoms; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7673:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
7673 | for(a = cNDummyAtoms; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘pymol::Result<> SelectorSelect1(PyMOLGlobals*, EvalElem*, int)’:
layer3/Selector.cpp:8378:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMolecule*>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
8378 | for(a = cNDummyModels; a < I->Obj.size(); a++)
| ~~^~~~~~~~~~~~~~~
layer3/Selector.cpp:8388:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMolecule*>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
8388 | else if(model > I->Obj.size())
| ~~~~~~^~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘int SelectorSelect2(PyMOLGlobals*, EvalElem*, int)’:
layer3/Selector.cpp:8470:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
8470 | for(a = cNDummyAtoms; a < I->Table.size(); a++)
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:8474:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
8474 | for(a = cNDummyAtoms; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:8522:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
8522 | for(a = cNDummyAtoms; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:8533:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
8533 | for(a = cNDummyAtoms; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:8544:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
8544 | for(a = cNDummyAtoms; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:8555:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
8555 | for(a = cNDummyAtoms; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:8570:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
8570 | for(a = cNDummyAtoms; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:8581:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
8581 | for(a = cNDummyAtoms; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:8592:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
8592 | for(a = cNDummyAtoms; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:8603:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
8603 | for(a = cNDummyAtoms; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:8618:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
8618 | for(a = cNDummyAtoms; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:8629:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
8629 | for(a = cNDummyAtoms; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:8640:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
8640 | for(a = cNDummyAtoms; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:8651:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
8651 | for(a = cNDummyAtoms; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘int SelectorLogic1(PyMOLGlobals*, EvalElem*, int)’:
layer3/Selector.cpp:9128:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
9128 | for(a = 0; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:9157:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
9157 | for(a = 0; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘int SelectorOperator22(PyMOLGlobals*, EvalElem*, int)’:
layer3/Selector.cpp:9416:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare]
9416 | for(a = 0; a < table_size; a++) {
| ~~^~~~~~~~~~~~
layer3/Selector.cpp:9438:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
9438 | for(a = 0; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:9468:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
9468 | for(a = 0; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:9473:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
9473 | for(a = cNDummyAtoms; a < I->Table.size(); a++)
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘pymol::Result<std::unique_ptr<int [], std::default_delete<int []> > > SelectorEvaluate(PyMOLGlobals*, std::vector<std::__cxx11::basic_string<char> >&, int, int)’:
layer3/Selector.cpp:9622:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
9622 | while(ok && c < word.size()) {
| ~~^~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘DistSet* SelectorGetDistSet(PyMOLGlobals*, DistSet*, int, int, int, int, int, float, float*)’:
layer3/Selector.cpp:10213:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
10213 | for(a = cNDummyAtoms; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘DistSet* SelectorGetAngleSet(PyMOLGlobals*, DistSet*, int, int, int, int, int, int, int, float*, int*)’:
layer3/Selector.cpp:10495:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
10495 | for(a = cNDummyAtoms; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:10519:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
10519 | for(a = cNDummyAtoms; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘DistSet* SelectorGetDihedralSet(PyMOLGlobals*, DistSet*, int, int, int, int, int, int, int, int, int, float*, int*)’:
layer3/Selector.cpp:10724:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
10724 | for(a = cNDummyAtoms; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:10801:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
10801 | for(a = cNDummyAtoms; a < I->Table.size(); a++) {
| ~~^~~~~~~~~~~~~~~~~
layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = float; SizeTs = {int, int, int, int}]’:
layer3/Selector.cpp:4800:18: required from here
layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare]
100 | assert(sizeof...(pos) <= n_dim());
| ~~~~~~~~~~~~~~~^~~~~~~~~~
layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = float; SizeTs = {int, int, int}]’:
layer3/Selector.cpp:5309:20: required from here
layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare]
layer3/Executive.cpp: In function ‘ExecutiveGroup(PyMOLGlobals*, pymol::zstring_view, pymol::zstring_view, int, int)’:
layer3/Executive.cpp:2259:40: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 235 [-Wformat-truncation=]
2259 | " Executive: adding '%s' to group '%s'.\n", rec.name, rec.group_name
| ^~
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 36 and 546 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp: In function ‘ExecutiveSetName(PyMOLGlobals*, pymol::zstring_view, pymol::zstring_view, bool)’:
layer3/Executive.cpp:3523:41: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 222 [-Wformat-truncation=]
3523 | " Warning: Invalid characters in '%s' have been replaced or stripped\n",
| ^~
3524 | name ENDFB(G);
| ~~~~
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 67 and 322 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp: In function ‘ExecutiveSetSession(PyMOLGlobals*, _object*, int, int)’:
layer3/Executive.cpp:5070:57: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 213 [-Wformat-truncation=]
5070 | " Executive: skipping unrecognized object \"%s\" of type %d.\n",
| ^~
In function ‘ExecutiveSetNamedEntries(PyMOLGlobals*, _object*, int, int, int)’,
inlined from ‘ExecutiveSetSession(PyMOLGlobals*, _object*, int, int)’ at layer3/Executive.cpp:5696:38:
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 56 and 321 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp: In function ‘ExecutiveSetSession(PyMOLGlobals*, _object*, int, int)’:
layer3/Executive.cpp:5095:58: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 210 [-Wformat-truncation=]
5095 | "ExectiveSetNamedEntries-Error: after object \"%s\".\n", rec->name ENDFB(G);
| ^~
In function ‘ExecutiveSetNamedEntries(PyMOLGlobals*, _object*, int, int, int)’,
inlined from ‘ExecutiveSetSession(PyMOLGlobals*, _object*, int, int)’ at layer3/Executive.cpp:5696:38:
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 49 and 304 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer3/ExecutivePython.cpp -o build/temp.linux-x86_64-cpython-311/layer3/ExecutivePython.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer3/Selector.cpp: In function ‘SelectorAssignSS(PyMOLGlobals*, int, int, int, int, ObjectMolecule*, int)’:
layer3/Selector.cpp:1722:70: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 207 [-Wformat-truncation=]
1722 | " AssignSS-Warning: Ignoring incomplete residue /%s/%s/%s/%d%c ...\n",
| ^~
In file included from /usr/include/stdio.h:906,
from /usr/include/c++/13/cstdio:42,
from /usr/include/c++/13/ext/string_conversions.h:45,
from /usr/include/c++/13/bits/basic_string.h:4072,
from /usr/include/c++/13/string:54,
from layer3/Selector.cpp:20:
In function ‘snprintf’,
inlined from ‘SelectorAssignSS(PyMOLGlobals*, int, int, int, int, ObjectMolecule*, int)’ at layer3/Selector.cpp:1721:19:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 59 and 324 bytes into a destination of size 255
54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
55 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
56 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
layer3/ExecutivePython.cpp: In function ‘pymol::Result<> ExecutiveSetRawAlignment(PyMOLGlobals*, pymol::zstring_view, PyObject*, pymol::zstring_view, int, int)’:
layer3/ExecutivePython.cpp:171:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘long int’ [-Wsign-compare]
171 | for(size_t c = 0; c < n_cols; ++c) {
| ~~^~~~~~~~
layer3/ExecutivePython.cpp:180:25: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘long int’ [-Wsign-compare]
180 | for(size_t i = 0; i < n_idx; ++i) {
| ~~^~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer3/MaeExportHelpers.cpp -o build/temp.linux-x86_64-cpython-311/layer3/MaeExportHelpers.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In file included from layer2/AtomInfo.h:23,
from layer3/MaeExportHelpers.h:11,
from layer3/MaeExportHelpers.cpp:11:
In function ‘SettingUniqueGetTypedValuePtr(PyMOLGlobals*, int, int, int, bool*)’,
inlined from ‘SettingUniqueGetIfDefined<bool>(PyMOLGlobals*, int, int, bool*)bool’ at layer1/Setting.h:447:39,
inlined from ‘AtomSettingGetIfDefined<bool, AtomInfoType const>(PyMOLGlobals*, AtomInfoType const*, int, bool*)bool’ at layer2/AtomInfo.h:496:33,
inlined from ‘AtomSettingGetWD<bool, AtomInfoType const>(PyMOLGlobals*, AtomInfoType const*, int, bool)bool’ at layer2/AtomInfo.h:506:36,
inlined from ‘SettingGet<bool>(PyMOLGlobals*, SeleCoordIterator const&, int)bool’ at layer3/MaeExportHelpers.cpp:24:26,
inlined from ‘MaeExportGetAtomStyle(PyMOLGlobals*, SeleCoordIterator const&)’ at layer3/MaeExportHelpers.cpp:73:26:
layer1/Setting.h:436:11: warning: ‘out’ may be used uninitialized [-Wmaybe-uninitialized]
436 | int i = *out;
| ^~~~
layer2/AtomInfo.h: In function ‘MaeExportGetAtomStyle(PyMOLGlobals*, SeleCoordIterator const&)’:
layer2/AtomInfo.h:505:5: note: ‘out’ was declared here
505 | V out;
| ^~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer3/SelectorTmp.cpp -o build/temp.linux-x86_64-cpython-311/layer3/SelectorTmp.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer3/SpecRec.cpp -o build/temp.linux-x86_64-cpython-311/layer3/SpecRec.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer3/SpecRecSpecial.cpp -o build/temp.linux-x86_64-cpython-311/layer3/SpecRecSpecial.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer4/Cmd.cpp -o build/temp.linux-x86_64-cpython-311/layer4/Cmd.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer4/Cmd.cpp: In function ‘PyObject* CmdPushUndo(PyObject*, PyObject*)’:
layer4/Cmd.cpp:2216:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
2216 | if(ok)
| ^~
layer4/Cmd.cpp:2218:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
2218 | if(s0[0])
| ^~
layer4/Cmd.cpp: In function ‘PyObject* CmdGetMinMax(PyObject*, PyObject*)’:
layer4/Cmd.cpp:4469:7: warning: variable ‘ok’ set but not used [-Wunused-but-set-variable]
4469 | int ok = false;
| ^~
In file included from layer4/Cmd.cpp:77:
layer1/PConv.h: In instantiation of ‘PyObject* PConvToPyObject(const std::array<_Tp, _Nm>&) [with T = float; long unsigned int N = 3; PyObject = _object]’:
layer4/Cmd.cpp:380:27: required from ‘PyObject* APIResult(PyMOLGlobals*, pymol::Result<T>&) [with T = std::array<float, 3>; PyObject = _object]’
layer4/Cmd.cpp:4034:19: required from here
layer1/PConv.h:259:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
259 | for (int i = 0; i < N; ++i) {
| ~~^~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer4/Menu.cpp -o build/temp.linux-x86_64-cpython-311/layer4/Menu.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer4/PopUp.cpp -o build/temp.linux-x86_64-cpython-311/layer4/PopUp.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In file included from layer0/OOMac.h:22,
from layer4/PopUp.cpp:23:
layer4/PopUp.cpp: In function ‘void PopUpFree(Block*)’:
layer0/MemoryDebug.h:86:32: warning: deleting object of polymorphic class type ‘CPopUp’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
86 | #define DeleteP(ptr) {if(ptr) {delete ptr;ptr=NULL;}}
layer4/PopUp.cpp:401:3: note: in expansion of macro ‘DeleteP’
401 | DeleteP(I);
| ^~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer5/PyMOL.cpp -o build/temp.linux-x86_64-cpython-311/layer5/PyMOL.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer5/PyMOL.cpp: In function ‘PyMOLreturn_status Loader(CPyMOL*, const char*, const char*, int, const char*, const char*, int, int, int, int, int, int)’:
layer5/PyMOL.cpp:1546:27: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘long unsigned int’ [-Wsign-compare]
1546 | if((stop - start) >= sizeof(WordType))
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
In file included from layer5/PyMOL.cpp:23:
layer5/PyMOL.cpp: In function ‘void PyMOL_Stop(CPyMOL*)’:
layer0/MemoryDebug.h:86:32: warning: deleting object of polymorphic class type ‘CMovie’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
86 | #define DeleteP(ptr) {if(ptr) {delete ptr;ptr=NULL;}}
layer5/PyMOL.cpp:1987:3: note: in expansion of macro ‘DeleteP’
1987 | DeleteP(G->Movie);
| ^~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer5/TestPyMOL.cpp -o build/temp.linux-x86_64-cpython-311/layer5/TestPyMOL.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer5/main.cpp -o build/temp.linux-x86_64-cpython-311/layer5/main.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD ov/src/OVContext.cpp -o build/temp.linux-x86_64-cpython-311/ov/src/OVContext.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
ov/src/OVContext.cpp: In function ‘void OVContext_Del(OVContext*)’:
ov/src/OVContext.cpp:21:13: warning: variable ‘heap’ set but not used [-Wunused-but-set-variable]
21 | OVHeap *heap = I->heap;
| ^~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD ov/src/OVHeap.cpp -o build/temp.linux-x86_64-cpython-311/ov/src/OVHeap.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD ov/src/OVHeapArray.cpp -o build/temp.linux-x86_64-cpython-311/ov/src/OVHeapArray.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD ov/src/OVLexicon.cpp -o build/temp.linux-x86_64-cpython-311/ov/src/OVLexicon.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD ov/src/OVOneToAny.cpp -o build/temp.linux-x86_64-cpython-311/ov/src/OVOneToAny.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD ov/src/OVOneToOne.cpp -o build/temp.linux-x86_64-cpython-311/ov/src/OVOneToOne.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD ov/src/OVRandom.cpp -o build/temp.linux-x86_64-cpython-311/ov/src/OVRandom.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD ov/src/ov_utility.cpp -o build/temp.linux-x86_64-cpython-311/ov/src/ov_utility.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-x86_64-cpython-311/build/generated/ShaderText.o build/temp.linux-x86_64-cpython-311/contrib/mmtf-c/mmtf_parser.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/avsplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/binposplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/carplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/corplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/crdplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/dxplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/edmplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/grdplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/gridplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/hash.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/inthash.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/jsplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/mapplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/offplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/parmplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/phiplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/pltplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/plyplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/psfplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/situsplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/stlplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.o build/temp.linux-x86_64-cpython-311/layer0/Block.o build/temp.linux-x86_64-cpython-311/layer0/CarveHelper.o build/temp.linux-x86_64-cpython-311/layer0/ContourSurf.o build/temp.linux-x86_64-cpython-311/layer0/Crystal.o build/temp.linux-x86_64-cpython-311/layer0/Deferred.o build/temp.linux-x86_64-cpython-311/layer0/Err.o build/temp.linux-x86_64-cpython-311/layer0/Feedback.o build/temp.linux-x86_64-cpython-311/layer0/Field.o build/temp.linux-x86_64-cpython-311/layer0/File.o build/temp.linux-x86_64-cpython-311/layer0/GenericBuffer.o build/temp.linux-x86_64-cpython-311/layer0/GraphicsUtil.o build/temp.linux-x86_64-cpython-311/layer0/Isosurf.o build/temp.linux-x86_64-cpython-311/layer0/Map.o build/temp.linux-x86_64-cpython-311/layer0/Match.o build/temp.linux-x86_64-cpython-311/layer0/Matrix.o build/temp.linux-x86_64-cpython-311/layer0/MemoryDebug.o build/temp.linux-x86_64-cpython-311/layer0/MemoryUsage.o build/temp.linux-x86_64-cpython-311/layer0/MyPNG.o build/temp.linux-x86_64-cpython-311/layer0/Parse.o build/temp.linux-x86_64-cpython-311/layer0/Pixmap.o build/temp.linux-x86_64-cpython-311/layer0/PostProcess.o build/temp.linux-x86_64-cpython-311/layer0/ShaderMgr.o build/temp.linux-x86_64-cpython-311/layer0/ShaderPrg.o build/temp.linux-x86_64-cpython-311/layer0/Sphere.o build/temp.linux-x86_64-cpython-311/layer0/Tetsurf.o build/temp.linux-x86_64-cpython-311/layer0/Texture.o build/temp.linux-x86_64-cpython-311/layer0/Tracker.o build/temp.linux-x86_64-cpython-311/layer0/Triangle.o build/temp.linux-x86_64-cpython-311/layer0/Util.o build/temp.linux-x86_64-cpython-311/layer0/Util2.o build/temp.linux-x86_64-cpython-311/layer0/Vector.o build/temp.linux-x86_64-cpython-311/layer0/Word.o build/temp.linux-x86_64-cpython-311/layer0/ccealignmodule.o build/temp.linux-x86_64-cpython-311/layer0/marching_cubes.o build/temp.linux-x86_64-cpython-311/layer0/os_gl.o build/temp.linux-x86_64-cpython-311/layer1/Basis.o build/temp.linux-x86_64-cpython-311/layer1/ButMode.o build/temp.linux-x86_64-cpython-311/layer1/CGO.o build/temp.linux-x86_64-cpython-311/layer1/COLLADA.o build/temp.linux-x86_64-cpython-311/layer1/Character.o build/temp.linux-x86_64-cpython-311/layer1/Color.o build/temp.linux-x86_64-cpython-311/layer1/Control.o build/temp.linux-x86_64-cpython-311/layer1/Extrude.o build/temp.linux-x86_64-cpython-311/layer1/Font.o build/temp.linux-x86_64-cpython-311/layer1/FontGLUT.o build/temp.linux-x86_64-cpython-311/layer1/FontGLUT8x13.o build/temp.linux-x86_64-cpython-311/layer1/FontGLUT9x15.o build/temp.linux-x86_64-cpython-311/layer1/FontGLUTHel10.o build/temp.linux-x86_64-cpython-311/layer1/FontGLUTHel12.o build/temp.linux-x86_64-cpython-311/layer1/FontGLUTHel18.o build/temp.linux-x86_64-cpython-311/layer1/FontType.o build/temp.linux-x86_64-cpython-311/layer1/Movie.o build/temp.linux-x86_64-cpython-311/layer1/Ortho.o build/temp.linux-x86_64-cpython-311/layer1/P.o build/temp.linux-x86_64-cpython-311/layer1/PConv.o build/temp.linux-x86_64-cpython-311/layer1/Picking.o build/temp.linux-x86_64-cpython-311/layer1/Pop.o build/temp.linux-x86_64-cpython-311/layer1/PyMOLObject.o build/temp.linux-x86_64-cpython-311/layer1/Ray.o build/temp.linux-x86_64-cpython-311/layer1/Rep.o build/temp.linux-x86_64-cpython-311/layer1/Scene.o build/temp.linux-x86_64-cpython-311/layer1/SceneMouse.o build/temp.linux-x86_64-cpython-311/layer1/ScenePicking.o build/temp.linux-x86_64-cpython-311/layer1/SceneRay.o build/temp.linux-x86_64-cpython-311/layer1/SceneRender.o build/temp.linux-x86_64-cpython-311/layer1/ScrollBar.o build/temp.linux-x86_64-cpython-311/layer1/Seq.o build/temp.linux-x86_64-cpython-311/layer1/Setting.o build/temp.linux-x86_64-cpython-311/layer1/Shaker.o build/temp.linux-x86_64-cpython-311/layer1/SymOp.o build/temp.linux-x86_64-cpython-311/layer1/SymOpPConv.o build/temp.linux-x86_64-cpython-311/layer1/SymOpTools.o build/temp.linux-x86_64-cpython-311/layer1/Symmetry.o build/temp.linux-x86_64-cpython-311/layer1/Text.o build/temp.linux-x86_64-cpython-311/layer1/TypeFace.o build/temp.linux-x86_64-cpython-311/layer1/View.o build/temp.linux-x86_64-cpython-311/layer1/Wizard.o build/temp.linux-x86_64-cpython-311/layer2/AssemblyHelpers.o build/temp.linux-x86_64-cpython-311/layer2/AtomInfo.o build/temp.linux-x86_64-cpython-311/layer2/AtomInfoHistory.o build/temp.linux-x86_64-cpython-311/layer2/BondTypeHistory.o build/temp.linux-x86_64-cpython-311/layer2/CifFile.o build/temp.linux-x86_64-cpython-311/layer2/CifMoleculeReader.o build/temp.linux-x86_64-cpython-311/layer2/CoordSet.o build/temp.linux-x86_64-cpython-311/layer2/DistSet.o build/temp.linux-x86_64-cpython-311/layer2/GadgetSet.o build/temp.linux-x86_64-cpython-311/layer2/HydrogenAdder.o build/temp.linux-x86_64-cpython-311/layer2/MmodTyping.o build/temp.linux-x86_64-cpython-311/layer2/MmtfMoleculeReader.o build/temp.linux-x86_64-cpython-311/layer2/Mol2Typing.o build/temp.linux-x86_64-cpython-311/layer2/MolV3000.o build/temp.linux-x86_64-cpython-311/layer2/ObjectAlignment.o build/temp.linux-x86_64-cpython-311/layer2/ObjectCGO.o build/temp.linux-x86_64-cpython-311/layer2/ObjectCallback.o build/temp.linux-x86_64-cpython-311/layer2/ObjectDist.o build/temp.linux-x86_64-cpython-311/layer2/ObjectGadget.o build/temp.linux-x86_64-cpython-311/layer2/ObjectGadgetRamp.o build/temp.linux-x86_64-cpython-311/layer2/ObjectGroup.o build/temp.linux-x86_64-cpython-311/layer2/ObjectMap.o build/temp.linux-x86_64-cpython-311/layer2/ObjectMesh.o build/temp.linux-x86_64-cpython-311/layer2/ObjectMolecule.o build/temp.linux-x86_64-cpython-311/layer2/ObjectMolecule2.o build/temp.linux-x86_64-cpython-311/layer2/ObjectMolecule3.o build/temp.linux-x86_64-cpython-311/layer2/ObjectSlice.o build/temp.linux-x86_64-cpython-311/layer2/ObjectSurface.o build/temp.linux-x86_64-cpython-311/layer2/ObjectVolume.o build/temp.linux-x86_64-cpython-311/layer2/RepAngle.o build/temp.linux-x86_64-cpython-311/layer2/RepCartoon.o build/temp.linux-x86_64-cpython-311/layer2/RepCylBond.o build/temp.linux-x86_64-cpython-311/layer2/RepDihedral.o build/temp.linux-x86_64-cpython-311/layer2/RepDistDash.o build/temp.linux-x86_64-cpython-311/layer2/RepDistLabel.o build/temp.linux-x86_64-cpython-311/layer2/RepDot.o build/temp.linux-x86_64-cpython-311/layer2/RepEllipsoid.o build/temp.linux-x86_64-cpython-311/layer2/RepLabel.o build/temp.linux-x86_64-cpython-311/layer2/RepMesh.o build/temp.linux-x86_64-cpython-311/layer2/RepNonbonded.o build/temp.linux-x86_64-cpython-311/layer2/RepNonbondedSphere.o build/temp.linux-x86_64-cpython-311/layer2/RepRibbon.o build/temp.linux-x86_64-cpython-311/layer2/RepSphere.o build/temp.linux-x86_64-cpython-311/layer2/RepSphereGenerate.o build/temp.linux-x86_64-cpython-311/layer2/RepSphereImmediate.o build/temp.linux-x86_64-cpython-311/layer2/RepSurface.o build/temp.linux-x86_64-cpython-311/layer2/RepWireBond.o build/temp.linux-x86_64-cpython-311/layer2/Sculpt.o build/temp.linux-x86_64-cpython-311/layer2/SculptCache.o build/temp.linux-x86_64-cpython-311/layer2/SideChainHelper.o build/temp.linux-x86_64-cpython-311/layer2/VFont.o build/temp.linux-x86_64-cpython-311/layer3/AtomIterators.o build/temp.linux-x86_64-cpython-311/layer3/CifDataValueFormatter.o build/temp.linux-x86_64-cpython-311/layer3/Editor.o build/temp.linux-x86_64-cpython-311/layer3/Executive.o build/temp.linux-x86_64-cpython-311/layer3/ExecutivePython.o build/temp.linux-x86_64-cpython-311/layer3/MaeExportHelpers.o build/temp.linux-x86_64-cpython-311/layer3/MoleculeExporter.o build/temp.linux-x86_64-cpython-311/layer3/MovieScene.o build/temp.linux-x86_64-cpython-311/layer3/PlugIOManager.o build/temp.linux-x86_64-cpython-311/layer3/RingFinder.o build/temp.linux-x86_64-cpython-311/layer3/Seeker.o build/temp.linux-x86_64-cpython-311/layer3/Selector.o build/temp.linux-x86_64-cpython-311/layer3/SelectorTmp.o build/temp.linux-x86_64-cpython-311/layer3/SpecRec.o build/temp.linux-x86_64-cpython-311/layer3/SpecRecSpecial.o build/temp.linux-x86_64-cpython-311/layer4/Cmd.o build/temp.linux-x86_64-cpython-311/layer4/Menu.o build/temp.linux-x86_64-cpython-311/layer4/PopUp.o build/temp.linux-x86_64-cpython-311/layer5/PyMOL.o build/temp.linux-x86_64-cpython-311/layer5/TestPyMOL.o build/temp.linux-x86_64-cpython-311/layer5/main.o build/temp.linux-x86_64-cpython-311/ov/src/OVContext.o build/temp.linux-x86_64-cpython-311/ov/src/OVHeap.o build/temp.linux-x86_64-cpython-311/ov/src/OVHeapArray.o build/temp.linux-x86_64-cpython-311/ov/src/OVLexicon.o build/temp.linux-x86_64-cpython-311/ov/src/OVOneToAny.o build/temp.linux-x86_64-cpython-311/ov/src/OVOneToOne.o build/temp.linux-x86_64-cpython-311/ov/src/OVRandom.o build/temp.linux-x86_64-cpython-311/ov/src/ov_utility.o -L/usr/lib64 -L/usr/lib -L/usr/lib64 -lpng -lfreetype -lxml2 -lGL -lGLEW -lnetcdf -o build/lib.linux-x86_64-cpython-311/pymol/_cmd.cpython-311-x86_64-linux-gnu.so -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:62:16: warning: type ‘struct parm’ violates the C++ One Definition Rule [-Wodr]
62 | typedef struct parm {
| ^
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:59:16: note: a different type is defined in another translation unit
59 | typedef struct parm {
| ^
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:63:8: note: the first difference of corresponding definitions is field ‘title’
63 | char title[85];
| ^
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:60:17: note: a field with different name is defined in another translation unit
60 | char ititl[81];
| ^
contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp:33:3: warning: type ‘struct parmdata’ violates the C++ One Definition Rule [-Wodr]
33 | } parmdata;
| ^
contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp:32:3: note: a different type is defined in another translation unit
32 | } parmdata;
| ^
contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp:28:15: note: the first difference of corresponding definitions is field ‘prm’
28 | parmstruct *prm;
| ^
contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp:28:13: note: a field with different name is defined in another translation unit
28 | ReadPARM *rp;
| ^
layer0/Isosurf.cpp:47:16: warning: type ‘struct PointType’ violates the C++ One Definition Rule [-Wodr]
47 | typedef struct PointType {
| ^
layer0/Tetsurf.cpp:46:3: note: a different type is defined in another translation unit
46 | } PointType;
| ^
layer0/Isosurf.cpp:49:7: note: the first difference of corresponding definitions is field ‘NLink’
49 | int NLink;
| ^
layer0/Tetsurf.cpp:43:9: note: a field with different name is defined in another translation unit
43 | float Normal[3];
| ^
ov/src/OVOneToAny.cpp:15:3: warning: type ‘struct up_element’ violates the C++ One Definition Rule [-Wodr]
15 | } up_element;
| ^
ov/src/OVOneToOne.cpp:15:3: note: a different type is defined in another translation unit
15 | } up_element;
| ^
ov/src/OVOneToOne.cpp:14:25: note: the first difference of corresponding definitions is field ‘reverse_next’
14 | ov_size forward_next, reverse_next;
| ^
ov/src/OVOneToOne.cpp:15:3: note: a type with different number of fields is defined in another translation unit
15 | } up_element;
| ^
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function ‘recreate_command_line’:
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1334:11: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=]
1334 | line[0] = '\0';
| ^
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1333:26: note: destination object of size 0 allocated by ‘malloc’
1333 | line = (char *) malloc (sizeof(char) * len);
| ^
layer3/Executive.cpp: In function ‘ExecutiveManageObject’:
layer3/Executive.cpp:14473:11: warning: ‘strcpy’ writing between 1 and 256 bytes into a region of size 0 overflows the destination [-Wstringop-overflow=]
14473 | strcpy(rec->name, obj->Name);
| ^
lto1: note: destination object is likely at address zero
building 'chempy.champ._champ' extension
creating build/temp.linux-x86_64-cpython-311/contrib/champ
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -Icontrib/champ -I/usr/include/python3.11 -c -MMD contrib/champ/champ.c -o build/temp.linux-x86_64-cpython-311/contrib/champ/champ.o
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -Icontrib/champ -I/usr/include/python3.11 -c -MMD contrib/champ/chiral.c -o build/temp.linux-x86_64-cpython-311/contrib/champ/chiral.o
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -Icontrib/champ -I/usr/include/python3.11 -c -MMD contrib/champ/err2.c -o build/temp.linux-x86_64-cpython-311/contrib/champ/err2.o
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -Icontrib/champ -I/usr/include/python3.11 -c -MMD contrib/champ/feedback2.c -o build/temp.linux-x86_64-cpython-311/contrib/champ/feedback2.o
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -Icontrib/champ -I/usr/include/python3.11 -c -MMD contrib/champ/list.c -o build/temp.linux-x86_64-cpython-311/contrib/champ/list.o
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -Icontrib/champ -I/usr/include/python3.11 -c -MMD contrib/champ/os_memory.c -o build/temp.linux-x86_64-cpython-311/contrib/champ/os_memory.o
contrib/champ/os_memory.c: In function ‘OSMemoryZero’:
contrib/champ/os_memory.c:55:18: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
55 | while(count&&(((int)p)&mask)) {
| ^
contrib/champ/os_memory.c: In function ‘OSMemoryHashAdd’:
contrib/champ/os_memory.c:137:8: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
137 | hash=(int)rec;
| ^
contrib/champ/os_memory.c: In function ‘OSMemoryHashRemove’:
contrib/champ/os_memory.c:150:8: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
150 | hash=(int)rec;
| ^
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -Icontrib/champ -I/usr/include/python3.11 -c -MMD contrib/champ/sort.c -o build/temp.linux-x86_64-cpython-311/contrib/champ/sort.o
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -Icontrib/champ -I/usr/include/python3.11 -c -MMD contrib/champ/strblock.c -o build/temp.linux-x86_64-cpython-311/contrib/champ/strblock.o
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -Icontrib/champ -I/usr/include/python3.11 -c -MMD contrib/champ/vla.c -o build/temp.linux-x86_64-cpython-311/contrib/champ/vla.o
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -Icontrib/champ -I/usr/include/python3.11 -c -MMD contrib/champ/champ_module.c -o build/temp.linux-x86_64-cpython-311/contrib/champ/champ_module.o
gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-x86_64-cpython-311/contrib/champ/champ.o build/temp.linux-x86_64-cpython-311/contrib/champ/champ_module.o build/temp.linux-x86_64-cpython-311/contrib/champ/chiral.o build/temp.linux-x86_64-cpython-311/contrib/champ/err2.o build/temp.linux-x86_64-cpython-311/contrib/champ/feedback2.o build/temp.linux-x86_64-cpython-311/contrib/champ/list.o build/temp.linux-x86_64-cpython-311/contrib/champ/os_memory.o build/temp.linux-x86_64-cpython-311/contrib/champ/sort.o build/temp.linux-x86_64-cpython-311/contrib/champ/strblock.o build/temp.linux-x86_64-cpython-311/contrib/champ/vla.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-311/chempy/champ/_champ.cpython-311-x86_64-linux-gnu.so
Exception ignored in: <function Pool.__del__ at 0x7ff2de008040>
Traceback (most recent call last):
File "/usr/lib64/python3.11/multiprocessing/pool.py", line 271, in __del__
File "/usr/lib64/python3.11/multiprocessing/queues.py", line 377, in put
File "/usr/lib64/python3.11/multiprocessing/connection.py", line 199, in send_bytes
File "/usr/lib64/python3.11/multiprocessing/connection.py", line 399, in _send_bytes
AttributeError: 'NoneType' object has no attribute 'pack'
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.z0kJz8
+ umask 022
+ cd /builddir/build/BUILD
+ '[' /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64 '!=' / ']'
+ rm -rf /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64
++ dirname /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer'
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer'
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules'
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes'
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd pymol-open-source-2.5.0
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer'
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes'
+ /usr/bin/python3 setup.py install -O1 --skip-build --root /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64 --prefix /usr --use-msgpackc=c++11 --use-openmp=yes --pymol-path=/usr/lib64/python3.11/site-packages/pymol
running install
running install_lib
creating /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr
creating /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64
creating /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11
creating /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages
creating /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy
creating /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/bmin
copying build/lib.linux-x86_64-cpython-311/chempy/bmin/__init__.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/bmin
copying build/lib.linux-x86_64-cpython-311/chempy/bmin/commands.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/bmin
copying build/lib.linux-x86_64-cpython-311/chempy/bmin/realtime.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/bmin
copying build/lib.linux-x86_64-cpython-311/chempy/bmin/state.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/bmin
copying build/lib.linux-x86_64-cpython-311/chempy/bmin/util.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/bmin
creating /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/champ
copying build/lib.linux-x86_64-cpython-311/chempy/champ/_champ.cpython-311-x86_64-linux-gnu.so -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/champ
copying build/lib.linux-x86_64-cpython-311/chempy/champ/__init__.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/champ
copying build/lib.linux-x86_64-cpython-311/chempy/champ/amber99.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/champ
copying build/lib.linux-x86_64-cpython-311/chempy/champ/assign.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/champ
copying build/lib.linux-x86_64-cpython-311/chempy/champ/formal_charges.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/champ
creating /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/fast
copying build/lib.linux-x86_64-cpython-311/chempy/fast/__init__.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/fast
creating /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/fragments
copying build/lib.linux-x86_64-cpython-311/chempy/fragments/__init__.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/fragments
creating /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/mmtf
copying build/lib.linux-x86_64-cpython-311/chempy/mmtf/__init__.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/mmtf
copying build/lib.linux-x86_64-cpython-311/chempy/mmtf/io.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/mmtf
creating /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/tinker
copying build/lib.linux-x86_64-cpython-311/chempy/tinker/__init__.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/tinker
copying build/lib.linux-x86_64-cpython-311/chempy/tinker/amber.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/tinker
copying build/lib.linux-x86_64-cpython-311/chempy/tinker/keyword.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/tinker
copying build/lib.linux-x86_64-cpython-311/chempy/tinker/realtime.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/tinker
copying build/lib.linux-x86_64-cpython-311/chempy/tinker/state.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/tinker
copying build/lib.linux-x86_64-cpython-311/chempy/__init__.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-x86_64-cpython-311/chempy/arc.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-x86_64-cpython-311/chempy/bond_amber.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-x86_64-cpython-311/chempy/bond_mmff.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-x86_64-cpython-311/chempy/bonds.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-x86_64-cpython-311/chempy/brick.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-x86_64-cpython-311/chempy/cc1.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-x86_64-cpython-311/chempy/charge.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-x86_64-cpython-311/chempy/cif.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-x86_64-cpython-311/chempy/cpv.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-x86_64-cpython-311/chempy/dictdb.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-x86_64-cpython-311/chempy/gamess1.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-x86_64-cpython-311/chempy/gms.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-x86_64-cpython-311/chempy/hetatm.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-x86_64-cpython-311/chempy/io.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-x86_64-cpython-311/chempy/lst.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-x86_64-cpython-311/chempy/mae.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-x86_64-cpython-311/chempy/map.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-x86_64-cpython-311/chempy/mass.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-x86_64-cpython-311/chempy/mmd.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-x86_64-cpython-311/chempy/models.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-x86_64-cpython-311/chempy/mol.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-x86_64-cpython-311/chempy/mol2.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-x86_64-cpython-311/chempy/neighbor.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-x86_64-cpython-311/chempy/pdb.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-x86_64-cpython-311/chempy/pkl.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-x86_64-cpython-311/chempy/place.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-x86_64-cpython-311/chempy/protein.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-x86_64-cpython-311/chempy/protein_amber.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-x86_64-cpython-311/chempy/protein_amber99.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-x86_64-cpython-311/chempy/protein_mmff.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-x86_64-cpython-311/chempy/protein_residues.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-x86_64-cpython-311/chempy/sdf.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-x86_64-cpython-311/chempy/solvate.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-x86_64-cpython-311/chempy/water_amber.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-x86_64-cpython-311/chempy/water_residues.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-x86_64-cpython-311/chempy/xyz.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy
creating /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt
creating /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/forms
copying build/lib.linux-x86_64-cpython-311/pmg_qt/forms/askpartial.ui -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/forms
copying build/lib.linux-x86_64-cpython-311/pmg_qt/forms/change_confirm.ui -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/forms
copying build/lib.linux-x86_64-cpython-311/pmg_qt/forms/colors.ui -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/forms
copying build/lib.linux-x86_64-cpython-311/pmg_qt/forms/create_shortcut.ui -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/forms
copying build/lib.linux-x86_64-cpython-311/pmg_qt/forms/fetch.ui -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/forms
copying build/lib.linux-x86_64-cpython-311/pmg_qt/forms/help_shortcut.ui -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/forms
copying build/lib.linux-x86_64-cpython-311/pmg_qt/forms/load_aln.ui -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/forms
copying build/lib.linux-x86_64-cpython-311/pmg_qt/forms/load_mae.ui -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/forms
copying build/lib.linux-x86_64-cpython-311/pmg_qt/forms/load_map.ui -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/forms
copying build/lib.linux-x86_64-cpython-311/pmg_qt/forms/load_mtz.ui -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/forms
copying build/lib.linux-x86_64-cpython-311/pmg_qt/forms/load_traj.ui -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/forms
copying build/lib.linux-x86_64-cpython-311/pmg_qt/forms/movieexport.ui -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/forms
copying build/lib.linux-x86_64-cpython-311/pmg_qt/forms/pluginitem.ui -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/forms
copying build/lib.linux-x86_64-cpython-311/pmg_qt/forms/pluginmanager.ui -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/forms
copying build/lib.linux-x86_64-cpython-311/pmg_qt/forms/png.ui -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/forms
copying build/lib.linux-x86_64-cpython-311/pmg_qt/forms/props.ui -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/forms
copying build/lib.linux-x86_64-cpython-311/pmg_qt/forms/render.ui -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/forms
copying build/lib.linux-x86_64-cpython-311/pmg_qt/forms/save_molecule.ui -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/forms
copying build/lib.linux-x86_64-cpython-311/pmg_qt/forms/save_object.ui -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/forms
copying build/lib.linux-x86_64-cpython-311/pmg_qt/forms/shortcut_menu.ui -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/forms
copying build/lib.linux-x86_64-cpython-311/pmg_qt/forms/__init__.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/forms
creating /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/syntax
copying build/lib.linux-x86_64-cpython-311/pmg_qt/syntax/__init__.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/syntax
copying build/lib.linux-x86_64-cpython-311/pmg_qt/syntax/pml.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/syntax
copying build/lib.linux-x86_64-cpython-311/pmg_qt/syntax/pmlparser.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/syntax
copying build/lib.linux-x86_64-cpython-311/pmg_qt/syntax/python.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/syntax
copying build/lib.linux-x86_64-cpython-311/pmg_qt/TextEditor.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt
copying build/lib.linux-x86_64-cpython-311/pmg_qt/__init__.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt
copying build/lib.linux-x86_64-cpython-311/pmg_qt/advanced_settings_gui.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt
copying build/lib.linux-x86_64-cpython-311/pmg_qt/builder.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt
copying build/lib.linux-x86_64-cpython-311/pmg_qt/file_dialogs.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt
copying build/lib.linux-x86_64-cpython-311/pmg_qt/keymapping.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt
copying build/lib.linux-x86_64-cpython-311/pmg_qt/mimic_pmg_tk.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt
copying build/lib.linux-x86_64-cpython-311/pmg_qt/mimic_tk.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt
copying build/lib.linux-x86_64-cpython-311/pmg_qt/properties_dialog.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt
copying build/lib.linux-x86_64-cpython-311/pmg_qt/pymol_gl_widget.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt
copying build/lib.linux-x86_64-cpython-311/pmg_qt/pymol_qt_gui.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt
copying build/lib.linux-x86_64-cpython-311/pmg_qt/shortcut_menu_gui.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt
copying build/lib.linux-x86_64-cpython-311/pmg_qt/volume.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt
creating /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_tk
creating /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_tk/skins
creating /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_tk/skins/demo
copying build/lib.linux-x86_64-cpython-311/pmg_tk/skins/demo/__init__.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_tk/skins/demo
creating /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_tk/skins/normal
copying build/lib.linux-x86_64-cpython-311/pmg_tk/skins/normal/ModalWindow.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_tk/skins/normal
copying build/lib.linux-x86_64-cpython-311/pmg_tk/skins/normal/__init__.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_tk/skins/normal
copying build/lib.linux-x86_64-cpython-311/pmg_tk/skins/normal/builder.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_tk/skins/normal
copying build/lib.linux-x86_64-cpython-311/pmg_tk/skins/__init__.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_tk/skins
creating /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_tk/startup
copying build/lib.linux-x86_64-cpython-311/pmg_tk/startup/__init__.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_tk/startup
copying build/lib.linux-x86_64-cpython-311/pmg_tk/ColorEditor.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_tk
copying build/lib.linux-x86_64-cpython-311/pmg_tk/Demo.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_tk
copying build/lib.linux-x86_64-cpython-311/pmg_tk/PyMOLMapLoad.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_tk
copying build/lib.linux-x86_64-cpython-311/pmg_tk/SetEditor.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_tk
copying build/lib.linux-x86_64-cpython-311/pmg_tk/Setting.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_tk
copying build/lib.linux-x86_64-cpython-311/pmg_tk/TextEditor.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_tk
copying build/lib.linux-x86_64-cpython-311/pmg_tk/__init__.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_tk
copying build/lib.linux-x86_64-cpython-311/pmg_tk/volume.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_tk
copying build/lib.linux-x86_64-cpython-311/pmg_tk/PMGApp.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_tk
creating /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/_cmd.cpython-311-x86_64-linux-gnu.so -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
creating /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/Qt
copying build/lib.linux-x86_64-cpython-311/pymol/Qt/__init__.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/Qt
copying build/lib.linux-x86_64-cpython-311/pymol/Qt/utils.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/Qt
creating /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/plugins
copying build/lib.linux-x86_64-cpython-311/pymol/plugins/__init__.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/plugins
copying build/lib.linux-x86_64-cpython-311/pymol/plugins/installation.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/plugins
copying build/lib.linux-x86_64-cpython-311/pymol/plugins/legacysupport.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/plugins
copying build/lib.linux-x86_64-cpython-311/pymol/plugins/managergui.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/plugins
copying build/lib.linux-x86_64-cpython-311/pymol/plugins/managergui_qt.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/plugins
copying build/lib.linux-x86_64-cpython-311/pymol/plugins/repository.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/plugins
creating /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/stereochemistry
copying build/lib.linux-x86_64-cpython-311/pymol/stereochemistry/__init__.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/stereochemistry
creating /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard
copying build/lib.linux-x86_64-cpython-311/pymol/wizard/__init__.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard
copying build/lib.linux-x86_64-cpython-311/pymol/wizard/annotation.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard
copying build/lib.linux-x86_64-cpython-311/pymol/wizard/appearance.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard
copying build/lib.linux-x86_64-cpython-311/pymol/wizard/benchmark.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard
copying build/lib.linux-x86_64-cpython-311/pymol/wizard/box.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard
copying build/lib.linux-x86_64-cpython-311/pymol/wizard/charge.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard
copying build/lib.linux-x86_64-cpython-311/pymol/wizard/cleanup.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard
copying build/lib.linux-x86_64-cpython-311/pymol/wizard/command.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard
copying build/lib.linux-x86_64-cpython-311/pymol/wizard/demo.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard
copying build/lib.linux-x86_64-cpython-311/pymol/wizard/density.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard
copying build/lib.linux-x86_64-cpython-311/pymol/wizard/distance.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard
copying build/lib.linux-x86_64-cpython-311/pymol/wizard/dragging.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard
copying build/lib.linux-x86_64-cpython-311/pymol/wizard/filter.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard
copying build/lib.linux-x86_64-cpython-311/pymol/wizard/label.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard
copying build/lib.linux-x86_64-cpython-311/pymol/wizard/measurement.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard
copying build/lib.linux-x86_64-cpython-311/pymol/wizard/message.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard
copying build/lib.linux-x86_64-cpython-311/pymol/wizard/mutagenesis.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard
copying build/lib.linux-x86_64-cpython-311/pymol/wizard/nucmutagenesis.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard
copying build/lib.linux-x86_64-cpython-311/pymol/wizard/openvr.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard
copying build/lib.linux-x86_64-cpython-311/pymol/wizard/pair_fit.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard
copying build/lib.linux-x86_64-cpython-311/pymol/wizard/pseudoatom.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard
copying build/lib.linux-x86_64-cpython-311/pymol/wizard/renaming.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard
copying build/lib.linux-x86_64-cpython-311/pymol/wizard/sculpting.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard
copying build/lib.linux-x86_64-cpython-311/pymol/wizard/security.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard
copying build/lib.linux-x86_64-cpython-311/pymol/wizard/stereodemo.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard
copying build/lib.linux-x86_64-cpython-311/pymol/wizard/toggle.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard
copying build/lib.linux-x86_64-cpython-311/pymol/__init__.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/__main__.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/_gui.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/api.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/callback.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/cgo.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/checking.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/cmd.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/colorprinting.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/colorramping.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/commanding.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/completing.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/computing.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/constants.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/constants_palette.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/controlling.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/creating.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/diagnosing.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/editing.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/editor.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/experimenting.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/exporting.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/externing.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/feedingback.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/fitting.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/gui.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/headering.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/helping.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/importing.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/internal.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/invocation.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/keyboard.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/keywords.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/lazyio.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/locking.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/menu.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/monitoring.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/morphing.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/movie.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/moving.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/mpeg_encode.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/parser.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/parsing.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/povray.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/preset.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/pymolhttpd.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/querying.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/rpc.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/save_shortcut.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/selecting.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/selector.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/seqalign.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/setting.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/shortcut.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/shortcut_dict.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/shortcut_manager.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/util.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/vfont.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/viewing.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/wizarding.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/xray.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/xwin.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
creating /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol2
copying build/lib.linux-x86_64-cpython-311/pymol2/__init__.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol2
copying build/lib.linux-x86_64-cpython-311/pymol2/cmd2.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol2
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/bmin/__init__.py to __init__.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/bmin/commands.py to commands.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/bmin/realtime.py to realtime.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/bmin/state.py to state.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/bmin/util.py to util.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/champ/__init__.py to __init__.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/champ/amber99.py to amber99.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/champ/assign.py to assign.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/champ/formal_charges.py to formal_charges.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/fast/__init__.py to __init__.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/fragments/__init__.py to __init__.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/mmtf/__init__.py to __init__.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/mmtf/io.py to io.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/tinker/__init__.py to __init__.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/tinker/amber.py to amber.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/tinker/keyword.py to keyword.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/tinker/realtime.py to realtime.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/tinker/state.py to state.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/__init__.py to __init__.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/arc.py to arc.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/bond_amber.py to bond_amber.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/bond_mmff.py to bond_mmff.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/bonds.py to bonds.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/brick.py to brick.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/cc1.py to cc1.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/charge.py to charge.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/cif.py to cif.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/cpv.py to cpv.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/dictdb.py to dictdb.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/gamess1.py to gamess1.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/gms.py to gms.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/hetatm.py to hetatm.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/io.py to io.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/lst.py to lst.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/mae.py to mae.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/map.py to map.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/mass.py to mass.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/mmd.py to mmd.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/models.py to models.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/mol.py to mol.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/mol2.py to mol2.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/neighbor.py to neighbor.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/pdb.py to pdb.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/pkl.py to pkl.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/place.py to place.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/protein.py to protein.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/protein_amber.py to protein_amber.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/protein_amber99.py to protein_amber99.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/protein_mmff.py to protein_mmff.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/protein_residues.py to protein_residues.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/sdf.py to sdf.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/solvate.py to solvate.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/water_amber.py to water_amber.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/water_residues.py to water_residues.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/xyz.py to xyz.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/forms/__init__.py to __init__.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/syntax/__init__.py to __init__.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/syntax/pml.py to pml.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/syntax/pmlparser.py to pmlparser.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/syntax/python.py to python.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/TextEditor.py to TextEditor.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/__init__.py to __init__.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/advanced_settings_gui.py to advanced_settings_gui.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/builder.py to builder.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/file_dialogs.py to file_dialogs.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/keymapping.py to keymapping.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/mimic_pmg_tk.py to mimic_pmg_tk.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/mimic_tk.py to mimic_tk.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/properties_dialog.py to properties_dialog.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/pymol_gl_widget.py to pymol_gl_widget.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/pymol_qt_gui.py to pymol_qt_gui.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/shortcut_menu_gui.py to shortcut_menu_gui.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/volume.py to volume.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_tk/skins/demo/__init__.py to __init__.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_tk/skins/normal/ModalWindow.py to ModalWindow.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_tk/skins/normal/__init__.py to __init__.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_tk/skins/normal/builder.py to builder.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_tk/skins/__init__.py to __init__.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_tk/startup/__init__.py to __init__.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_tk/ColorEditor.py to ColorEditor.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_tk/Demo.py to Demo.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_tk/PyMOLMapLoad.py to PyMOLMapLoad.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_tk/SetEditor.py to SetEditor.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_tk/Setting.py to Setting.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_tk/TextEditor.py to TextEditor.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_tk/__init__.py to __init__.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_tk/volume.py to volume.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_tk/PMGApp.py to PMGApp.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/Qt/__init__.py to __init__.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/Qt/utils.py to utils.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/plugins/__init__.py to __init__.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/plugins/installation.py to installation.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/plugins/legacysupport.py to legacysupport.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/plugins/managergui.py to managergui.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/plugins/managergui_qt.py to managergui_qt.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/plugins/repository.py to repository.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/stereochemistry/__init__.py to __init__.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard/__init__.py to __init__.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard/annotation.py to annotation.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard/appearance.py to appearance.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard/benchmark.py to benchmark.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard/box.py to box.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard/charge.py to charge.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard/cleanup.py to cleanup.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard/command.py to command.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard/demo.py to demo.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard/density.py to density.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard/distance.py to distance.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard/dragging.py to dragging.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard/filter.py to filter.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard/label.py to label.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard/measurement.py to measurement.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard/message.py to message.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard/mutagenesis.py to mutagenesis.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard/nucmutagenesis.py to nucmutagenesis.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard/openvr.py to openvr.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard/pair_fit.py to pair_fit.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard/pseudoatom.py to pseudoatom.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard/renaming.py to renaming.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard/sculpting.py to sculpting.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard/security.py to security.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard/stereodemo.py to stereodemo.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard/toggle.py to toggle.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/__init__.py to __init__.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/__main__.py to __main__.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/_gui.py to _gui.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/api.py to api.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/callback.py to callback.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/cgo.py to cgo.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/checking.py to checking.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/cmd.py to cmd.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/colorprinting.py to colorprinting.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/colorramping.py to colorramping.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/commanding.py to commanding.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/completing.py to completing.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/computing.py to computing.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/constants.py to constants.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/constants_palette.py to constants_palette.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/controlling.py to controlling.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/creating.py to creating.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/diagnosing.py to diagnosing.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/editing.py to editing.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/editor.py to editor.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/experimenting.py to experimenting.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/exporting.py to exporting.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/externing.py to externing.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/feedingback.py to feedingback.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/fitting.py to fitting.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/gui.py to gui.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/headering.py to headering.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/helping.py to helping.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/importing.py to importing.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/internal.py to internal.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/invocation.py to invocation.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/keyboard.py to keyboard.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/keywords.py to keywords.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/lazyio.py to lazyio.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/locking.py to locking.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/menu.py to menu.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/monitoring.py to monitoring.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/morphing.py to morphing.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/movie.py to movie.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/moving.py to moving.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/mpeg_encode.py to mpeg_encode.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/parser.py to parser.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/parsing.py to parsing.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/povray.py to povray.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/preset.py to preset.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/pymolhttpd.py to pymolhttpd.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/querying.py to querying.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/rpc.py to rpc.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/save_shortcut.py to save_shortcut.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/selecting.py to selecting.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/selector.py to selector.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/seqalign.py to seqalign.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/setting.py to setting.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/shortcut.py to shortcut.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/shortcut_dict.py to shortcut_dict.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/shortcut_manager.py to shortcut_manager.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/util.py to util.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/vfont.py to vfont.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/viewing.py to viewing.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizarding.py to wizarding.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/xray.py to xray.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/xwin.py to xwin.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol2/__init__.py to __init__.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol2/cmd2.py to cmd2.cpython-311.pyc
writing byte-compilation script '/tmp/tmp6mdmz6nc.py'
/usr/bin/python3 /tmp/tmp6mdmz6nc.py
removing /tmp/tmp6mdmz6nc.py
running install_egg_info
running egg_info
creating pymol.egg-info
writing pymol.egg-info/PKG-INFO
writing dependency_links to pymol.egg-info/dependency_links.txt
writing top-level names to pymol.egg-info/top_level.txt
writing manifest file 'pymol.egg-info/SOURCES.txt'
/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py:643: SetuptoolsDeprecationWarning: Custom 'build_py' does not implement 'get_data_files_without_manifest'.
Please extend command classes from setuptools instead of distutils.
warnings.warn(
reading manifest file 'pymol.egg-info/SOURCES.txt'
adding license file 'LICENSE'
adding license file 'AUTHORS'
writing manifest file 'pymol.egg-info/SOURCES.txt'
Copying pymol.egg-info to /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol-2.5.0-py3.11.egg-info
copying LICENSE -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying data -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/data
copying test -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/test
copying examples -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/examples
creating /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/bin
Exception ignored in: <function Pool.__del__ at 0x7f712d7bc040>
Traceback (most recent call last):
File "/usr/lib64/python3.11/multiprocessing/pool.py", line 271, in __del__
File "/usr/lib64/python3.11/multiprocessing/queues.py", line 377, in put
File "/usr/lib64/python3.11/multiprocessing/connection.py", line 199, in send_bytes
File "/usr/lib64/python3.11/multiprocessing/connection.py", line 399, in _send_bytes
AttributeError: 'NoneType' object has no attribute 'pack'
+ rm -rfv /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/bin/__pycache__
+ echo '#!/bin/sh'
+ echo 'export PYMOL_PATH=/usr/lib64/python3.11/site-packages/pymol'
+ echo 'exec /usr/bin/python3 /usr/lib64/python3.11/site-packages/pymol/__init__.py "$@"'
+ cp -a data examples test /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/
+ rm -f /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/examples/devel/link_demo.py
+ rm -f /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/examples/devel/particle01.py
+ rm -f /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/examples/devel/particle02.py
+ rm -f /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/test/inp/B03.py
+ rm -f /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/test/inp/B05.py
+ rm -f /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/test/inp/B11.py
+ rm -f /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/test/ref/T01.log
+ rm -f /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/pymol_path/examples/devel/link_demo.py
+ rm -f /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/pymol_path/examples/devel/particle01.py
+ rm -f /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/pymol_path/examples/devel/particle02.py
+ rm -f /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/pymol_path/test/inp/B03.py
+ rm -f /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/pymol_path/test/inp/B05.py
+ rm -f /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/pymol_path/test/inp/B11.py
+ rm -f /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/pymol_path/test/ref/T01.log
+ mkdir -p /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/bin
+ install -p -m 755 pymol /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/bin/
+ desktop-file-install --vendor= --dir=/builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/share/applications /builddir/build/SOURCES/pymol.desktop
+ mkdir -p /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/share/pixmaps
+ install -p -m 644 /builddir/build/SOURCES/pymol.png /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/share/pixmaps/
+ mkdir -p /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/share/metainfo
+ install -p -m 644 /builddir/build/SOURCES/pymol.appdata.xml /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/share/metainfo/
+ appstream-util validate-relax --nonet /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64//usr/share/metainfo/pymol.appdata.xml
/builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64//usr/share/metainfo/pymol.appdata.xml: OK
+ /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 2.5.0-6.fc38 --unique-debug-suffix -2.5.0-6.fc38.x86_64 --unique-debug-src-base pymol-2.5.0-6.fc38.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/pymol-open-source-2.5.0
extracting debug info from /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/_cmd.cpython-311-x86_64-linux-gnu.so
extracting debug info from /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/champ/_champ.cpython-311-x86_64-linux-gnu.so
original debug info size: 59008kB, size after compression: 45312kB
/usr/bin/sepdebugcrcfix: Updated 2 CRC32s, 0 CRC32s did match.
51230 blocks
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/check-rpaths
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
*** WARNING: ./usr/src/debug/pymol-2.5.0-6.fc38.x86_64/layer3/MaeExportHelpers.h is executable but has no shebang, removing executable bit
*** WARNING: ./usr/src/debug/pymol-2.5.0-6.fc38.x86_64/layer3/MaeExportHelpers.cpp is executable but has no shebang, removing executable bit
*** WARNING: ./usr/src/debug/pymol-2.5.0-6.fc38.x86_64/layer0/GraphicsUtil.h is executable but has no shebang, removing executable bit
*** WARNING: ./usr/src/debug/pymol-2.5.0-6.fc38.x86_64/layer0/GraphicsUtil.cpp is executable but has no shebang, removing executable bit
mangling shebang in /usr/bin/pymol from /bin/sh to #!/usr/bin/sh
+ /usr/lib/rpm/brp-remove-la-files
+ env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2
Bytecompiling .py files below /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib/debug/usr/lib64/python3.11 using python3.11
Bytecompiling .py files below /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11 using python3.11
+ /usr/lib/rpm/redhat/brp-python-hardlink
Processing files: pymol-2.5.0-6.fc38.x86_64
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.oEV7Bk
+ umask 022
+ cd /builddir/build/BUILD
+ cd pymol-open-source-2.5.0
+ DOCDIR=/builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/share/doc/pymol
+ export LC_ALL=C
+ LC_ALL=C
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/share/doc/pymol
+ cp -pr AUTHORS /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/share/doc/pymol
+ cp -pr DEVELOPERS /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/share/doc/pymol
+ cp -pr README.md /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/share/doc/pymol
+ cp -pr ChangeLog /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/share/doc/pymol
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.fPFmRx
+ umask 022
+ cd /builddir/build/BUILD
+ cd pymol-open-source-2.5.0
+ LICENSEDIR=/builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/share/licenses/pymol
+ export LC_ALL=C
+ LC_ALL=C
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/share/licenses/pymol
+ cp -pr LICENSE /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/share/licenses/pymol
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: PyMOL(x86-64) = 0:2.5.0-6.fc38 application() application(pymol.desktop) metainfo() metainfo(pymol.appdata.xml) pymol = 2.5.0-6.fc38 pymol(x86-64) = 2.5.0-6.fc38 python3.11dist(pymol) = 2.5 python3dist(pymol) = 2.5
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: /usr/bin/sh libGL.so.1()(64bit) libGLEW.so.2.2()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_2.7)(64bit) libfreetype.so.6()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libgomp.so.1()(64bit) libgomp.so.1(GOMP_1.0)(64bit) libgomp.so.1(GOMP_4.0)(64bit) libgomp.so.1(OMP_1.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.27)(64bit) libm.so.6(GLIBC_2.29)(64bit) libm.so.6(GLIBC_2.35)(64bit) libnetcdf.so.19()(64bit) libpng16.so.16()(64bit) libpng16.so.16(PNG16_0)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.5)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libxml2.so.2()(64bit) libxml2.so.2(LIBXML2_2.4.30)(64bit) libxml2.so.2(LIBXML2_2.6.0)(64bit) libxml2.so.2(LIBXML2_2.6.3)(64bit) python(abi) = 3.11 rtld(GNU_HASH)
Processing files: pymol-debugsource-2.5.0-6.fc38.x86_64
Provides: pymol-debugsource = 2.5.0-6.fc38 pymol-debugsource(x86-64) = 2.5.0-6.fc38
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: pymol-debuginfo-2.5.0-6.fc38.x86_64
Provides: debuginfo(build-id) = 04e92f5e2adaf8736fe5df4eedfb964268beca1b debuginfo(build-id) = 9f3b17b84bf74f6cf8815cfdc0d3683d3b26d668 pymol-debuginfo = 2.5.0-6.fc38 pymol-debuginfo(x86-64) = 2.5.0-6.fc38
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: pymol-debugsource(x86-64) = 2.5.0-6.fc38
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64
Wrote: /builddir/build/RPMS/pymol-debugsource-2.5.0-6.fc38.x86_64.rpm
Wrote: /builddir/build/RPMS/pymol-debuginfo-2.5.0-6.fc38.x86_64.rpm
Wrote: /builddir/build/RPMS/pymol-2.5.0-6.fc38.x86_64.rpm
Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.rIJ3gt
+ umask 022
+ cd /builddir/build/BUILD
+ cd pymol-open-source-2.5.0
+ /usr/bin/rm -rf /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.eDzJkD
+ umask 022
+ cd /builddir/build/BUILD
+ rm -rf pymol-open-source-2.5.0 pymol-open-source-2.5.0.gemspec
+ RPM_EC=0
++ jobs -p
+ exit 0
Finish: rpmbuild pymol-2.5.0-6.fc38.src.rpm
Finish: build phase for pymol-2.5.0-6.fc38.src.rpm
INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-x86_64-1674292270.246865/root/var/log/dnf.rpm.log
/var/lib/mock/fedora-rawhide-x86_64-1674292270.246865/root/var/log/dnf.librepo.log
/var/lib/mock/fedora-rawhide-x86_64-1674292270.246865/root/var/log/dnf.log
INFO: Done(/var/lib/copr-rpmbuild/results/pymol-2.5.0-6.fc38.src.rpm) Config(child) 5 minutes 57 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
Finish: run
Running RPMResults tool