Mock Version: 3.5
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs  --target x86_64 --nodeps /builddir/build/SPECS/bout++.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1674255180.706770/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x7f2f39d75350>timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.6y2lga28:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=True)
Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.6y2lga28:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']
Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '9607a4e2ff5c42ae8bbe2eb718ce6740', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1674255180.706770/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.6y2lga28:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;<mock-chroot>\\007"', '--setenv=PS1=<mock-chroot> \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bs  --target x86_64 --nodeps /builddir/build/SPECS/bout++.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1674000000
Wrote: /builddir/build/SRPMS/bout++-4.4.2-6.fc38.src.rpm
Child return code was: 0
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb  --target x86_64 --nodeps /builddir/build/SPECS/bout++.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1674255180.706770/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x7f2f39d75350>timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.6y2lga28:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=True)
Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.6y2lga28:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']
Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '369896dbbee34d429442af1047923839', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1674255180.706770/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.6y2lga28:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;<mock-chroot>\\007"', '--setenv=PS1=<mock-chroot> \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bb  --target x86_64 --nodeps /builddir/build/SPECS/bout++.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1674000000
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.T95wSm
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf BOUT++-v4.4.2
+ /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/BOUT++-v4.4.2.tar.gz
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd BOUT++-v4.4.2
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ sed -e /boututils/d -e /boutdata/d -i make.config.in
+ rm -rf externalpackages/mpark.variant/
+ mkdir -p externalpackages/mpark.variant/include/
+ rm -rf tools/pylib/boutdata
+ rm -rf tools/pylib/boututils
++ find -L tools/pylib/ -type f
++ grep -v _boutcore_build
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/zoidberg/zoidberg.py
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/zoidberg/test_zoidberg.py
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/zoidberg/test_rzline.py
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/zoidberg/test_poloidal_grid.py
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/zoidberg/test_grid.py
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/zoidberg/test_fieldtracer.py
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/zoidberg/test_field.py
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/zoidberg/rzline.py
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/zoidberg/progress.py
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/zoidberg/poloidal_grid.py
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/zoidberg/plot.py
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/zoidberg/grid.py
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/zoidberg/fieldtracer.py
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/zoidberg/field.py
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/zoidberg/boundary.py
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/zoidberg/__init__.py
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/post_bout/rms.py
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/post_bout/read_inp.py
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/post_bout/read_cxx.py
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/post_bout/pb_present.py
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/post_bout/pb_nonlinear.py
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/post_bout/pb_draw.py
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/post_bout/pb_corral.py
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/post_bout/grate2.py
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/post_bout/basic_info.py
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/post_bout/__init__.py
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/post_bout/ListDict.py
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/boutconfig/__init__.py.in
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/boutconfig/__init__.py.cin
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/bout_runners/bout_runners.py
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/bout_runners/__init__.py
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/bout_runners/README.md
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/README.md
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/Makefile
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/.gitignore
+ autoupdate
configure.ac:178: warning: The preprocessor macro `STDC_HEADERS' is obsolete.
  Except in unusual embedded environments, you can safely include all
  ISO C90 headers unconditionally.
+ touch build-aux/config.rpath
+ autoreconf -vif
autoreconf: export WARNINGS=
autoreconf: Entering directory '.'
autoreconf: configure.ac: not using Gettext
autoreconf: running: aclocal --force 
autoreconf: configure.ac: tracing
configure.ac: warning: AM_GNU_GETTEXT is used, but not AM_GNU_GETTEXT_VERSION or AM_GNU_GETTEXT_REQUIRE_VERSION
autoreconf: configure.ac: not using Libtool
autoreconf: configure.ac: not using Intltool
autoreconf: configure.ac: not using Gtkdoc
autoreconf: running: /usr/bin/autoconf --force
configure.ac:178: warning: The preprocessor macro `STDC_HEADERS' is obsolete.
configure.ac:178:   Except in unusual embedded environments, you can safely include all
configure.ac:178:   ISO C90 headers unconditionally.
configure.ac:636: warning: The macro `AC_HAVE_LIBRARY' is obsolete.
configure.ac:636: You should run autoupdate.
./lib/autoconf/libs.m4:138: AC_HAVE_LIBRARY is expanded from...
m4/ax_lib_hdf5.m4:93: AX_LIB_HDF5 is expanded from...
configure.ac:636: the top level
configure.ac:649: warning: The macro `AC_HAVE_LIBRARY' is obsolete.
configure.ac:649: You should run autoupdate.
./lib/autoconf/libs.m4:138: AC_HAVE_LIBRARY is expanded from...
m4/ax_lib_parallelhdf5.m4:93: AX_LIB_PARALLELHDF5 is expanded from...
configure.ac:649: the top level
autoreconf: configure.ac: not using Autoheader
autoreconf: configure.ac: not using Automake
autoreconf: 'build-aux/install-sh' is updated
autoreconf: 'build-aux/config.sub' is updated
autoreconf: 'build-aux/config.guess' is updated
autoreconf: Leaving directory '.'
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.vtXfkU
+ umask 022
+ cd /builddir/build/BUILD
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer'
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer'
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules'
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes'
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd BOUT++-v4.4.2
+ export CC=mpicc
+ CC=mpicc
+ export CXX=mpicxx
+ CXX=mpicxx
+ for mpi in mpich openmpi
+ mkdir build_mpich
+ cp -al CHANGELOG.md CITATION.bib CITATION.cff CMakeLists.txt CONTRIBUTING.md LICENSE LICENSE.GPL README.md aclocal.m4 aminclude_static.am autom4te.cache change_summary.md cmake configure configure.ac configure.ac~ configure~ examples externalpackages include locale m4 make.config.in makefile makefile.submodules manual output.make requirements.txt src tests tools build-aux bin build_mpich
+ for mpi in mpich openmpi
+ mkdir build_openmpi
+ cp -al CHANGELOG.md CITATION.bib CITATION.cff CMakeLists.txt CONTRIBUTING.md LICENSE LICENSE.GPL README.md aclocal.m4 aminclude_static.am autom4te.cache change_summary.md cmake configure configure.ac configure.ac~ configure~ examples externalpackages include locale m4 make.config.in makefile makefile.submodules manual output.make requirements.txt src tests tools build-aux bin build_openmpi
+ for mpi in mpich openmpi
+ pushd build_mpich
+ '[' mpich = mpich ']'
+ . /etc/profile.d/modules.sh
~/build/BUILD/BOUT++-v4.4.2/build_mpich ~/build/BUILD/BOUT++-v4.4.2
++ '[' -n /bin/sh ']'
++ '[' sh = sh ']'
++ shell=sh
++ '[' -f /usr/share/Modules/init/sh ']'
++ . /usr/share/Modules/init/sh
+++ unset _mlshdbg
+++ '[' 0 = 1 ']'
+++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD'
+++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD'
+++ unset _mlre _mlIFS
+++ '[' -n x ']'
+++ _mlIFS=' 	
'
+++ IFS=' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
++++ eval 'echo ${LD_LIBRARY_PATH+x}'
+++++ echo
+++ '[' -n '' ']'
+++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH
++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}'
+++++ echo
+++ _mlre='LD_LIBRARY_PATH='\'''\'' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
++++ eval 'echo ${LD_PRELOAD+x}'
+++++ echo
+++ '[' -n '' ']'
+++ _mlrv=MODULES_RUNENV_LD_PRELOAD
++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}'
+++++ echo
+++ _mlre='LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' '
+++ '[' -n 'LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']'
+++ _mlre='eval LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 '
++++ eval 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++++ LD_LIBRARY_PATH=
+++++ LD_PRELOAD=
+++++ __MODULES_QUARANTINE_SET=1
+++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++ _mlcode='_module_raw() {
   eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")";
   _mlstatus=$?;
   return $_mlstatus;
};
module() {
   local _mlredir=0;
   if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then
      if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then
         _mlredir=0;
      elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then
         _mlredir=1;
      fi;
   fi;
   case " $@ " in
      *'\'' --no-redirect '\''*) _mlredir=0 ;;
      *'\'' --redirect '\''*) _mlredir=1 ;;
   esac;
   if [ $_mlredir -eq 0 ]; then
      _module_raw "$@";
   else
      _module_raw "$@" 2>&1;
   fi;
};
ml() { module ml "$@"; };
MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD;
unset __MODULES_AUTOINIT_INPROGRESS;
MODULESHOME=/usr/share/Modules; export MODULESHOME;
test 0;'
+++ _mlret=0
+++ '[' -n x ']'
+++ IFS=' 	
'
+++ unset _mlIFS
+++ unset _mlre _mlv _mlrv
+++ '[' 0 -eq 0 ']'
+++ eval '_module_raw() {
   eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")";
   _mlstatus=$?;
   return $_mlstatus;
};
module() {
   local _mlredir=0;
   if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then
      if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then
         _mlredir=0;
      elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then
         _mlredir=1;
      fi;
   fi;
   case " $@ " in
      *'\'' --no-redirect '\''*) _mlredir=0 ;;
      *'\'' --redirect '\''*) _mlredir=1 ;;
   esac;
   if [ $_mlredir -eq 0 ]; then
      _module_raw "$@";
   else
      _module_raw "$@" 2>&1;
   fi;
};
ml() { module ml "$@"; };
MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD;
unset __MODULES_AUTOINIT_INPROGRESS;
MODULESHOME=/usr/share/Modules; export MODULESHOME;
test 0;'
++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl
++++ export MODULES_CMD
++++ unset __MODULES_AUTOINIT_INPROGRESS
++++ MODULESHOME=/usr/share/Modules
++++ export MODULESHOME
++++ test 0
+++ '[' /bin/sh '!=' '' ']'
+++ export -f _module_raw
+++ export -f module
++++ type -t ml
+++ '[' function = function ']'
+++ export -f ml
+++ unset _mlcode _mlret
+++ '[' -n '' ']'
+ module load mpi/mpich-x86_64
+ local _mlredir=0
+ '[' -n '' ']'
+ case " $@ " in
+ '[' 0 -eq 0 ']'
+ _module_raw load mpi/mpich-x86_64
++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh load mpi/mpich-x86_64
+ eval 'LD_LIBRARY_PATH=/usr/lib64/mpich/lib; export LD_LIBRARY_PATH;
MPI_COMPILER=mpich-x86_64; export MPI_COMPILER;
MANPATH=/usr/share/man/mpich-x86_64:/usr/share/man:; export MANPATH;
MPI_INCLUDE=/usr/include/mpich-x86_64; export MPI_INCLUDE;
MPI_MAN=/usr/share/man/mpich-x86_64; export MPI_MAN;
MPI_PYTHON_SITEARCH=%\{python2_sitearch\}/mpich; export MPI_PYTHON_SITEARCH;
_LMFILES_=/usr/share/modulefiles/mpi/mpich-x86_64; export _LMFILES_;
LOADEDMODULES=mpi/mpich-x86_64; export LOADEDMODULES;
PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH;
MPI_PYTHON3_SITEARCH=/usr/lib64/python3.11/site-packages/mpich; export MPI_PYTHON3_SITEARCH;
MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich; export MPI_FORTRAN_MOD_DIR;
MPI_HOME=/usr/lib64/mpich; export MPI_HOME;
__MODULES_LMCONFLICT=mpi/mpich-x86_64\&mpi; export __MODULES_LMCONFLICT;
__MODULES_SHARE_MANPATH=:2; export __MODULES_SHARE_MANPATH;
MPI_SYSCONFIG=/etc/mpich-x86_64; export MPI_SYSCONFIG;
MPI_SUFFIX=_mpich; export MPI_SUFFIX;
__MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH;
MPI_PYTHON2_SITEARCH=%\{python2_sitearch\}/mpich; export MPI_PYTHON2_SITEARCH;
MPI_LIB=/usr/lib64/mpich/lib; export MPI_LIB;
PATH=/usr/lib64/mpich/bin:/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH;
MPI_BIN=/usr/lib64/mpich/bin; export MPI_BIN;
test 0;'
++ LD_LIBRARY_PATH=/usr/lib64/mpich/lib
++ export LD_LIBRARY_PATH
++ MPI_COMPILER=mpich-x86_64
++ export MPI_COMPILER
++ MANPATH=/usr/share/man/mpich-x86_64:/usr/share/man:
++ export MANPATH
++ MPI_INCLUDE=/usr/include/mpich-x86_64
++ export MPI_INCLUDE
++ MPI_MAN=/usr/share/man/mpich-x86_64
++ export MPI_MAN
++ MPI_PYTHON_SITEARCH='%{python2_sitearch}/mpich'
++ export MPI_PYTHON_SITEARCH
++ _LMFILES_=/usr/share/modulefiles/mpi/mpich-x86_64
++ export _LMFILES_
++ LOADEDMODULES=mpi/mpich-x86_64
++ export LOADEDMODULES
++ PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig
++ export PKG_CONFIG_PATH
++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.11/site-packages/mpich
++ export MPI_PYTHON3_SITEARCH
++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich
++ export MPI_FORTRAN_MOD_DIR
++ MPI_HOME=/usr/lib64/mpich
++ export MPI_HOME
++ __MODULES_LMCONFLICT='mpi/mpich-x86_64&mpi'
++ export __MODULES_LMCONFLICT
++ __MODULES_SHARE_MANPATH=:2
++ export __MODULES_SHARE_MANPATH
++ MPI_SYSCONFIG=/etc/mpich-x86_64
++ export MPI_SYSCONFIG
++ MPI_SUFFIX=_mpich
++ export MPI_SUFFIX
++ __MODULES_SHARE_PKG_CONFIG_PATH=:1
++ export __MODULES_SHARE_PKG_CONFIG_PATH
++ MPI_PYTHON2_SITEARCH='%{python2_sitearch}/mpich'
++ export MPI_PYTHON2_SITEARCH
++ MPI_LIB=/usr/lib64/mpich/lib
++ export MPI_LIB
++ PATH=/usr/lib64/mpich/bin:/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin
++ export PATH
++ MPI_BIN=/usr/lib64/mpich/bin
++ export MPI_BIN
++ test 0
+ _mlstatus=0
+ return 0
+ export 'CFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer'
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer'
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer'
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer'
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules'
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes'
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=mpicc
+ export CC
+ CXX=mpicxx
+ export CXX
+ '[' '-flto=auto -ffat-lto-objectsx' '!=' x ']'
++ find . -type f -name configure -print
+ for file in $(find . -type f -name configure -print)
+ /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\) = /__attribute__ ((used)) char (*f) () = /g' ./tools/pdb2idl/configure
+ diff -u ./tools/pdb2idl/configure.backup ./tools/pdb2idl/configure
+ mv ./tools/pdb2idl/configure.backup ./tools/pdb2idl/configure
+ /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\);/__attribute__ ((used)) char (*f) ();/g' ./tools/pdb2idl/configure
+ diff -u ./tools/pdb2idl/configure.backup ./tools/pdb2idl/configure
+ mv ./tools/pdb2idl/configure.backup ./tools/pdb2idl/configure
+ /usr/bin/sed -r --in-place=.backup 's/^char \$2 \(\);/__attribute__ ((used)) char \$2 ();/g' ./tools/pdb2idl/configure
+ diff -u ./tools/pdb2idl/configure.backup ./tools/pdb2idl/configure
+ mv ./tools/pdb2idl/configure.backup ./tools/pdb2idl/configure
+ /usr/bin/sed --in-place=.backup '1{$!N;$!N};$!N;s/int x = 1;\nint y = 0;\nint z;\nint nan;/volatile int x = 1; volatile int y = 0; volatile int z, nan;/;P;D' ./tools/pdb2idl/configure
+ diff -u ./tools/pdb2idl/configure.backup ./tools/pdb2idl/configure
+ mv ./tools/pdb2idl/configure.backup ./tools/pdb2idl/configure
+ /usr/bin/sed --in-place=.backup 's#^lt_cv_sys_global_symbol_to_cdecl=.*#lt_cv_sys_global_symbol_to_cdecl="sed -n -e '\''s/^T .* \\(.*\\)$/extern int \\1();/p'\'' -e '\''s/^$symcode* .* \\(.*\\)$/extern char \\1;/p'\''"#' ./tools/pdb2idl/configure
+ diff -u ./tools/pdb2idl/configure.backup ./tools/pdb2idl/configure
+ mv ./tools/pdb2idl/configure.backup ./tools/pdb2idl/configure
+ for file in $(find . -type f -name configure -print)
+ /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\) = /__attribute__ ((used)) char (*f) () = /g' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\);/__attribute__ ((used)) char (*f) ();/g' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed -r --in-place=.backup 's/^char \$2 \(\);/__attribute__ ((used)) char \$2 ();/g' ./configure
+ diff -u ./configure.backup ./configure
--- ./configure.backup	2023-01-20 22:55:52.425516281 +0000
+++ ./configure	2023-01-20 22:55:52.589518216 +0000
@@ -1864,7 +1864,7 @@
 #ifdef __cplusplus
 extern "C"
 #endif
-char $2 ();
+__attribute__ ((used)) char $2 ();
 /* The GNU C library defines this for functions which it implements
     to always fail with ENOSYS.  Some functions are actually named
     something starting with __ and the normal name is an alias.  */
+ /usr/bin/sed --in-place=.backup '1{$!N;$!N};$!N;s/int x = 1;\nint y = 0;\nint z;\nint nan;/volatile int x = 1; volatile int y = 0; volatile int z, nan;/;P;D' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed --in-place=.backup 's#^lt_cv_sys_global_symbol_to_cdecl=.*#lt_cv_sys_global_symbol_to_cdecl="sed -n -e '\''s/^T .* \\(.*\\)$/extern int \\1();/p'\'' -e '\''s/^$symcode* .* \\(.*\\)$/extern char \\1;/p'\''"#' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ '[' 1 = 1 ']'
+++ dirname ./configure
++ find . -name config.guess -o -name config.sub
+ for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub)
++ basename ./build-aux/config.guess
+ '[' -f /usr/lib/rpm/redhat/config.guess ']'
+ /usr/bin/rm -f ./build-aux/config.guess
++ basename ./build-aux/config.guess
+ /usr/bin/cp -fv /usr/lib/rpm/redhat/config.guess ./build-aux/config.guess
'/usr/lib/rpm/redhat/config.guess' -> './build-aux/config.guess'
+ for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub)
++ basename ./build-aux/config.sub
+ '[' -f /usr/lib/rpm/redhat/config.sub ']'
+ /usr/bin/rm -f ./build-aux/config.sub
++ basename ./build-aux/config.sub
+ /usr/bin/cp -fv /usr/lib/rpm/redhat/config.sub ./build-aux/config.sub
'/usr/lib/rpm/redhat/config.sub' -> './build-aux/config.sub'
+ '[' 1 = 1 ']'
+ '[' x '!=' 'x-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' ']'
++ find . -name ltmain.sh
+ for i in $(find . -name ltmain.sh)
+ /usr/bin/sed -i.backup -e 's~compiler_flags=$~compiler_flags="-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld"~' ./build-aux/ltmain.sh
++ grep -q runstatedir=DIR ./configure
++ echo --runstatedir=/run
+ ./configure --build=x86_64-redhat-linux-gnu --host=x86_64-redhat-linux-gnu --program-prefix= --disable-dependency-tracking --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib64 --libexecdir=/usr/libexec --localstatedir=/var --runstatedir=/run --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info --with-netcdf --with-hdf5 --enable-shared --with-system-mpark --libdir=/usr/lib64/mpich/lib --bindir=/usr/lib64/mpich/bin --sbindir=/usr/lib64/mpich/sbin --includedir=/usr/include/mpich-x86_64 --datarootdir=/usr/share --with-petsc --with-sundials
configure: WARNING: unrecognized options: --disable-dependency-tracking
checking for x86_64-redhat-linux-gnu-mpic++... no
checking for x86_64-redhat-linux-gnu-mpicxx... no
checking for x86_64-redhat-linux-gnu-mpiCC... no
checking for x86_64-redhat-linux-gnu-sxmpic++... no
checking for x86_64-redhat-linux-gnu-hcp... no
checking for x86_64-redhat-linux-gnu-mpxlC_r... no
checking for x86_64-redhat-linux-gnu-mpxlC... no
checking for x86_64-redhat-linux-gnu-mpixlcxx_r... no
checking for x86_64-redhat-linux-gnu-mpixlcxx... no
checking for x86_64-redhat-linux-gnu-mpg++... no
checking for x86_64-redhat-linux-gnu-mpc++... no
checking for x86_64-redhat-linux-gnu-mpCC... no
checking for x86_64-redhat-linux-gnu-cmpic++... no
checking for x86_64-redhat-linux-gnu-mpiFCC... no
checking for x86_64-redhat-linux-gnu-CCicpc... no
checking for x86_64-redhat-linux-gnu-pgCC... no
checking for x86_64-redhat-linux-gnu-pathCC... no
checking for x86_64-redhat-linux-gnu-sxc++... no
checking for x86_64-redhat-linux-gnu-xlC_r... no
checking for x86_64-redhat-linux-gnu-xlC... no
checking for x86_64-redhat-linux-gnu-bgxlC_r... no
checking for x86_64-redhat-linux-gnu-bgxlC... no
checking for x86_64-redhat-linux-gnu-openCC... no
checking for x86_64-redhat-linux-gnu-sunCC... no
checking for x86_64-redhat-linux-gnu-crayCC... no
checking for x86_64-redhat-linux-gnu-aCC... no
checking for x86_64-redhat-linux-gnu-CC... no
checking for x86_64-redhat-linux-gnu-g++... no
checking for x86_64-redhat-linux-gnu-c++... no
checking for x86_64-redhat-linux-gnu-gpp... no
checking for x86_64-redhat-linux-gnu-cxx... no
checking for x86_64-redhat-linux-gnu-cc++... no
checking for x86_64-redhat-linux-gnu-cl.exe... no
checking for x86_64-redhat-linux-gnu-FCC... no
checking for x86_64-redhat-linux-gnu-KCC... no
checking for x86_64-redhat-linux-gnu-RCC... no
checking for mpic++... mpic++
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C++... yes
checking whether mpic++ accepts -g... yes
checking for mpic++ option to enable C++11 features... none needed
checking for function MPI_Init... yes
checking for mpi.h... yes
checking for a race-free mkdir -p... /usr/bin/mkdir -p
checking whether ln -s works... yes
checking whether make sets $(MAKE)... yes
checking for a BSD-compatible install... /usr/bin/install -c
checking for gmake... gmake
checking for x86_64-redhat-linux-gnu-ranlib... no
checking for ranlib... ranlib
checking whether mpic++ supports C++11 features by default... yes
checking for sqrt in -lm... yes
checking for stdio.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for strings.h... yes
checking for sys/stat.h... yes
checking for sys/types.h... yes
checking for unistd.h... yes
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for malloc.h... yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking for strings.h... (cached) yes
checking build system type... x86_64-redhat-linux-gnu
checking host system type... x86_64-redhat-linux-gnu
checking for GNU libc compatible malloc... yes
checking for GNU libc compatible realloc... yes
checking for vprintf... yes
checking does C++ compiler support __PRETTY_FUNCTION__... yes
checking for a sed that does not truncate output... /usr/bin/sed
checking whether to build with code coverage support... no
checking whether C++ compiler accepts -Werror=unknown-warning-option... no
checking whether C++ compiler accepts -we10006,10148... no
checking whether C++ compiler accepts -Wall... yes
checking whether C++ compiler accepts -Wextra... yes
checking whether C++ compiler accepts -Wnull-dereference... yes
checking whether C++ compiler accepts -Wno-cast-function-type... yes
configure: Enabling default optimisations
checking whether C++ compiler accepts -O2... yes
configure: Run-time checking enabled
configure:  -> Level 2 (Basic checking + stack tracing)
configure: Segmentation fault handling enabled
configure: Output coloring enabled
configure: Field name tracking disabled
configure: Signaling floating point exceptions disabled
checking for addr2line... yes
checking for popen... yes
checking for backtrace... yes
checking for execinfo.h... yes
checking for dlfcn.h... yes
checking for library containing dladdr... none required
configure: Native backtrace enabled
./configure: line 7057: git: command not found
checking for fftw-wisdom... /usr/bin/fftw-wisdom
checking for fftw3.h... yes
checking for libfftw3... yes
checking for ncxx4-config... /usr/bin/ncxx4-config
configure:  -> NetCDF-4 support enabled
configure: Parallel-NetCDF support disabled
checking for gawk... gawk
checking for x86_64-redhat-linux-gnu-gcc... mpicc
checking whether the compiler supports GNU C... yes
checking whether mpicc accepts -g... yes
checking for mpicc option to enable C11 features... none needed
checking for h5cc... /usr/bin/h5cc
checking for HDF5 type... serial
checking for HDF5 libraries... yes (version 1.12.1)
checking for hdf5.h... yes
checking for H5Fcreate in -lhdf5... yes
checking for main in -lhdf5_hl... yes
configure: Found HDF5
checking how to run the C++ preprocessor... mpic++ -E
configure: Parallel HDF5 support disabled
configure: Supported file formats: netCDF HDF5
checking for libblas... no
checking for liblapack... no
checking for x86_64-redhat-linux-gnu-pkg-config... /usr/bin/x86_64-redhat-linux-gnu-pkg-config
checking pkg-config is at least version 0.9.0... yes
configure: Using PETSC_DIR=, PETSC_ARCH=
checking for //conf... no
checking for //lib/petsc/conf... no
checking for PETSC... yes
checking PETSc has SUNDIALS support... no
checking for SUNDIALS config header... yes
checking for SUNDIALS minor version... ok
configure: Searching for SUNDIALS IDA library
checking for sundials-config... no
configure: WARNING: No sundials-config available, no path given, will try compiling with IDA anyway
checking if we can compile with SUNDIALS IDA... yes
configure: Using SUNDIALS IDA solver
configure: => IDA solver enabled
configure: Searching for SUNDIALS CVODE library
checking for sundials-config... (cached) no
configure: WARNING: No sundials-config available, no path given, will try compiling with CVODE anyway
checking if we can compile with SUNDIALS CVODE... yes
configure: Using SUNDIALS CVODE solver
configure: => CVODE solver enabled
configure: Searching for SUNDIALS ARKODE library
checking for sundials-config... (cached) no
configure: WARNING: No sundials-config available, no path given, will try compiling with ARKODE anyway
checking if we can compile with SUNDIALS ARKODE... yes
configure: Using SUNDIALS ARKODE solver
configure: => ARKODE solver enabled
configure: Scorep support disabled
checking for mpark.variant... yes
checking for uuid/uuid.h... no
configure: PVODE being built without OpenMP support
configure: Building PVODE
configure: Successfully built PVODE
configure: Installing PVODE into BOUT++ sourcetree
checking whether NLS is requested... yes
checking for msgfmt... /usr/bin/msgfmt
checking for gmsgfmt... /usr/bin/msgfmt
checking for xgettext... /usr/bin/xgettext
checking for msgmerge... /usr/bin/msgmerge
checking for ld used by mpicc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for shared library run path origin... done
checking 32-bit host C ABI... no
checking for ELF binary format... yes
checking for the common suffixes of directories in the library search path... lib,lib,lib64
checking for CFPreferencesCopyAppValue... no
checking for CFLocaleCopyPreferredLanguages... no
checking for GNU gettext in libc... yes
checking whether to use NLS... yes
checking where the gettext function comes from... libc
configure: Enabling language support with gettext
gmake: Entering directory '/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/locale'
Building language:  de
Building language:  es
Building language:  fr
Building language:  zh_CN
Building language:  zh_TW
gmake: Leaving directory '/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/locale'
configure: creating ./config.status
config.status: creating make.config
config.status: executing po-directories commands
configure: WARNING: unrecognized options: --disable-dependency-tracking
configure: creating ./config.status
config.status: creating make.config
config.status: creating bin/bout-config
config.status: creating src/makefile
config.status: creating tools/pylib/boutconfig/__init__.py
config.status: executing po-directories commands
configure: WARNING: unrecognized options: --disable-dependency-tracking
configure: -------------------------
configure:   Configuration summary  
configure: -------------------------
configure:   PETSc support           : yes (has SUNDIALS: no)
configure:   SLEPc support           : no
configure:   IDA support             : yes
configure:   CVODE support           : yes
configure:   ARKODE support          : yes
configure:   FFTW support            : yes
configure:   NetCDF support          : yes
configure:   Parallel-NetCDF support : no
configure:   HDF5 support            : yes (parallel: no)
configure:   MUMPS support           : no
configure:   Lapack support          : no
configure:   Scorep support          : no
configure:   OpenMP support          : no (schedule: )
configure:   Natural language support: yes (path: ${datarootdir}/locale)
configure:   System UUID generator   : no
configure: 
configure: -------------------------------
configure:   Data analysis configuration  
configure: -------------------------------
configure: 
configure: === IDL ===
configure: 
configure: Make sure that the tools/idllib directory is in your IDL_PATH
configure: e.g. by adding to your ~/.bashrc file
configure: 
configure:     export IDL_PATH=+/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tools/idllib:'<IDL_DEFAULT>':$IDL_PATH
configure: 
configure: === Python ===
configure: 
configure: Make sure that the tools/pylib directory is in your PYTHONPATH
configure: e.g. by adding to your ~/.bashrc file
configure: 
configure:    export PYTHONPATH=/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tools/pylib/:$PYTHONPATH
configure: 
configure: *** Now run 'gmake' to compile BOUT++ ***
+ sed -e 's| -L/usr/lib64 | |g' -e 's| -Wl,--as-needed | |g' -i make.config
+ sed -e 's|-lblas|-lflexiblas|g' -e 's|-llapack|-lflexiblas|g' -i make.config
+ sed -e 's/\\#/#/g' -i make.config
+ cat make.config
# configuration file for BOUT++
# September 2008: Converted to use autoconf. Can be manually edited
# for the (very) rare occasions when autoconf fails
# extra compilation flags:
# -DCHECK=lvl  Enables a host of additional checks on each operation
#              such as uninitialised data if lvl is > 0. -DCHECK=3
#              enables all tests, while -DCHECK=0 disables them.
#              Helps when debugging
# -DTRACK      Keeps track of variable names.
#              Enables more useful error messages
# for SSE2: -msse2 -mfpmath=sse
# 
# This must also specify one or more file formats
# -DPDBF  PDB format (need to include pdb_format.cxx)
# -DNCDF  NetCDF format (nc_format.cxx)
# PETSc config variables need to be first, else they may clobber other
# options (e.g. CXX, CXXFLAGS)
PETSC_DIR ?= 
PETSC_ARCH ?= 
SLEPC_DIR ?= 
SLEPC_ARCH ?= 
# These lines can be replaced in "make install" to point to install directories
# They are used in the CXXFLAGS variable below rather than hard-coding the directories
BOUT_INCLUDE_PATH=$(BOUT_TOP)/include
BOUT_LIB_PATH=$(BOUT_TOP)/lib
BOUT_CONFIG_FILE=$(BOUT_TOP)/make.config
SONAME=4.4.0
prefix = /usr
exec_prefix = /usr
datarootdir = /usr/share
# This path to the locale (.mo) files is hard-wired into bout++.cxx at compile time
BOUT_LOCALE_PATH=${datarootdir}/locale
# Created this variable so that a user won't overwrite the CXXFLAGS variable
# on the command line, just add to this one
BOUT_FLAGS = $(CXXFLAGS) -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DHAS_PRETTY_FUNCTION -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -DSIGHANDLE -DLOGCOLOR -DBOUT_VERSION_STRING="\"4.4.2\"" -DBOUT_VERSION_DOUBLE=4.42  -DBACKTRACE -fPIC -DBOUT_HAS_FFTW -DNCDF4 -DHDF5 -DBOUT_HAS_PETSC -DBOUT_HAS_IDA -DBOUT_HAS_CVODE -DBOUT_HAS_ARKODE -DBOUT_HAS_PVODE -DBOUT_HAS_GETTEXT -DBOUT_LOCALE_PATH=$(BOUT_LOCALE_PATH)   
#Use := here to force a "static" evaluation of the current state of BOUT_FLAGS to
#avoid infinite recursion that would arise if BOUT_FLAGS appeared on both sides of =
BOUT_FLAGS := $(BOUT_FLAGS) -DBOUT_FLAGS_STRING="$(BOUT_FLAGS)"
# Specify the MPI C++ compiler in CXX
CXX		= mpic++
CC      = $(CXX)
AR		= ar
ARFLAGS = cruU
RANLIB	= ranlib
MKDIR	= /usr/bin/mkdir -p
####################################################################
# Do not need to alter anything below
####################################################################
LD       = $(CXX)
LDFLAGS  = -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes
LIBS     = -lm  
CPPFLAGS = 
####################################################################
# Extra (optional) source files, includes and libs
# NOTE: EXTRA_SRC must include a solver (solver.cxx or ida_solver.cxx)
#       and a file format (nc_format.cxx or pdb_format.cxx)
####################################################################
EXTRA_INCS	  = $(CPPFLAGS)  -I/usr/include -I/usr/include -I/usr/include/mpich-x86_64/petsc     
EXTRA_LIBS	  = $(LIBS)  -lfftw3 -lnetcdf_c++4 -lnetcdf  -lhdf5_hl -lhdf5  -lhdf5_hl -lsz -lz -ldl -lm -L/usr/lib64/mpich/lib -lpetsc -lhdf5   -lsundials_ida -lsundials_nvecparallel   -lsundials_cvode -lsundials_nvecparallel   -lsundials_arkode -lsundials_nvecparallel  -L$(BOUT_LIB_PATH) -lpvode -lpvpre  
PRECON_SOURCE = 
BOUT_VERSION  = 4.4.2
####################################################################
# These are used for compiling physics modules using BOUT++ library
####################################################################
# Files that are needed by configure and should be dependencies for 'all'
OBJ    = $(SOURCEC:%.cxx=%.o)
ifndef RELEASE
LIB_A  = $(BOUT_LIB_PATH)/libbout++.a
LIB_SO = $(BOUT_LIB_PATH)/libbout++.so
LIB    =  $(BOUT_LIB_PATH)/libbout++.so
endif
MPARK_VARIANT_INCLUDE_PATH=
BOUT_INCLUDE = -I$(BOUT_INCLUDE_PATH) $(CXXINCLUDE) $(EXTRA_INCS) 
BOUT_LIBS    = -lm -L$(BOUT_LIB_PATH) -lbout++ $(EXTRA_LIBS)
CHANGED = $(shell find -f $(BOUT_TOP)/include $(BOUT_TOP)/src -type f \( -name \*.cxx -or -name \*.h \) -newer $(LIB) -print 2> /dev/null)
# This will set a default if no TARGET is provided
TARGET				?= $(SOURCEC:%.cxx=%)
####################################################################
# Definining stuff for recursive make
####################################################################
# Phony targets since they are directory names
.PHONY: $(DIRS) lib install libfast runtest manual sphinx doxygen
ifneq ("$(TARGET)","libfast")
all: $(BOUT_CONFIG_FILE) $(DIRS) $(TARGET)
else
all: $(BOUT_TOP)/config.status $(BOUT_CONFIG_FILE) $(DIRS)
endif
libfast: $(BOUT_CONFIG_FILE) $(DIRS)
####################################################################
# Recursively run make through subdirs
####################################################################
ifeq ("$(TARGET)" , "lib")
$(DIRS):
# make $@ slowly using the old method where parallel builds can cause
# race conditions that 
	@$(MAKE) -s --no-print-directory TARGET=lib -C $@ all
else
ifeq ("$(TARGET)","libfast")
$(DIRS):
# make $@ using the libfast method, where all .o files
# are only created in the end
	@$(MAKE) -s --no-print-directory TARGET=$(TARGET) -C $@ $(TARGET)
else
MODULE_DIR?=$(shell pwd)
$(DIRS):
# MODULE_DIR: pass the module directory, where the libraries should be
# created.
# SUB_NAME is used for creating a library with the expected name.
# first a potential trailing slash is removed, and after that the
# directory name is extracted. This allows to e.g. specify a directory
# as fuu/bar/ and still get an archive named bar.a
# The # probably doesn't need to be escaped as everything in the
# recipy is passed to the shell, even lines starting with #
	@$(MAKE) -s --no-print-directory MODULE_DIR=$(MODULE_DIR) SUB_NAME=$(shell f=$@ ; g=$${f%/} ; echo $${g##*/}) TARGET=sub -C $@
endif
endif
# Create 'lib' and 'include' incase they don't exist
$(BOUT_TOP)/include $(BOUT_TOP)/lib:
	$(MKDIR) $@
####################################################################
# Install header files and libraries
####################################################################
INSTALL = /usr/bin/install -c
INSTALL_PROGRAM = ${INSTALL}
INSTALL_DATA = ${INSTALL} -m 644
INSTALL_INCLUDE_PATH = $(DESTDIR)/usr/include/mpich-x86_64/bout++/
# A list of relative paths e.g. "fr/LC_MESSAGES/libbout.mo zh_CN/LC_MESSAGES/libbout.mo"
MO_FILES = $(shell cd locale; ls */LC_MESSAGES/libbout.mo)
install: libfast
	$(PRE_INSTALL)     # Pre-install commands follow.
	$(NORMAL_INSTALL)  # Normal commands follow.
	$(MKDIR) $(INSTALL_INCLUDE_PATH)/{,pvode,bout/sys,bout/invert}
	$(MKDIR) $(DESTDIR)/{/usr/lib64/mpich/lib,/usr/lib64/mpich/bin,/usr/share/bout++/idllib}
	$(INSTALL_DATA) include/*.hxx $(INSTALL_INCLUDE_PATH)
ifeq ("", "yes")
	$(MKDIR) $(INSTALL_INCLUDE_PATH)/mpark
	$(INSTALL_DATA) $(MPARK_VARIANT_INCLUDE_PATH)/mpark/*.hpp $(INSTALL_INCLUDE_PATH)/mpark
endif
	$(INSTALL_DATA) include/pvode/*.h $(INSTALL_INCLUDE_PATH)/pvode/
	$(INSTALL_DATA) include/bout/*.hxx $(INSTALL_INCLUDE_PATH)/bout/
	$(INSTALL_DATA) include/bout/sys/*.hxx $(INSTALL_INCLUDE_PATH)/bout/sys/
	$(INSTALL_DATA) include/bout/invert/*.hxx $(INSTALL_INCLUDE_PATH)/bout/invert/
ifneq ("x", "x")
	$(INSTALL_DATA) lib/libbout++.a $(DESTDIR)/usr/lib64/mpich/lib
	$(INSTALL_DATA) lib/libpvode.a $(DESTDIR)/usr/lib64/mpich/lib
	$(INSTALL_DATA) lib/libpvpre.a $(DESTDIR)/usr/lib64/mpich/lib
endif
ifneq ("$(RM) -f $(BOUT_LIB_PATH)/libbout++.ax", "x")
	$(INSTALL_PROGRAM) lib/libbout++.so.$(SONAME) $(DESTDIR)/usr/lib64/mpich/lib
	$(INSTALL_PROGRAM) lib/libpvode.so.* $(DESTDIR)/usr/lib64/mpich/lib
	$(INSTALL_PROGRAM) lib/libpvpre.so.* $(DESTDIR)/usr/lib64/mpich/lib
	rm -f $(DESTDIR)/usr/lib64/mpich/lib/lib{bout++,pvode,pvpre}.so
	ln -s libbout++.so.$(SONAME) $(DESTDIR)/usr/lib64/mpich/lib/libbout++.so
	ln -s libpvode.so.1.0.0 $(DESTDIR)/usr/lib64/mpich/lib/libpvode.so
	ln -s libpvpre.so.1.0.0 $(DESTDIR)/usr/lib64/mpich/lib/libpvpre.so
endif
	$(INSTALL_PROGRAM)  bin/bout-config $(DESTDIR)/usr/lib64/mpich/bin
	$(INSTALL_PROGRAM)  bin/bout-log-color $(DESTDIR)/usr/lib64/mpich/bin
	$(INSTALL_DATA)  tools/idllib/*.pro $(DESTDIR)/usr/share/bout++/idllib/
	$(INSTALL_DATA)  tools/idllib/README $(DESTDIR)/usr/share/bout++/idllib/
	$(INSTALL_DATA)  make.config $(INSTALL_INCLUDE_PATH)
	for mo in $(MO_FILES); do $(MKDIR) $(DESTDIR)${datarootdir}/locale/`dirname $$mo`; $(INSTALL_DATA) locale/$$mo $(DESTDIR)${datarootdir}/locale/$$mo; done
	$(POST_INSTALL)    # Post-install commands follow.
	@# Modify paths in the bout-config script 
	sed -i "s|^BOUT_INCLUDE_PATH=.*|BOUT_INCLUDE_PATH=/usr/include/mpich-x86_64/bout++|" $(DESTDIR)/usr/lib64/mpich/bin/bout-config 
	sed -i "s|^BOUT_LIB_PATH=.*|BOUT_LIB_PATH=/usr/lib64/mpich/lib|" $(DESTDIR)/usr/lib64/mpich/bin/bout-config
	sed -i "s|^BOUT_CONFIG_FILE=.*|BOUT_CONFIG_FILE=/usr/share/bout++/make.config|" $(DESTDIR)/usr/lib64/mpich/bin/bout-config
	sed -i "s|^idlpath=.*|idlpath=/usr/share/bout++/idllib/|" $(DESTDIR)/usr/lib64/mpich/bin/bout-config
	sed -i "s|^pythonpath=.*|pythonpath=/usr/share/bout++/pylib/|" $(DESTDIR)/usr/lib64/mpich/bin/bout-config
ifeq ("", "yes")
	sed -i "s|^MPARK_VARIANT_INCLUDE_PATH=.*|MPARK_VARIANT_INCLUDE_PATH=/usr/include/mpich-x86_64/bout++|" $(DESTDIR)/usr/lib64/mpich/bin/bout-config
endif
	@# Modify paths in the make.config file
	sed -i "s|^BOUT_INCLUDE_PATH=.*|BOUT_INCLUDE_PATH=/usr/include/mpich-x86_64/bout++|" $(INSTALL_INCLUDE_PATH)/make.config
	sed -i "s|^BOUT_LIB_PATH=.*|BOUT_LIB_PATH=/usr/lib64/mpich/lib|" $(INSTALL_INCLUDE_PATH)/make.config
	sed -i "s|^BOUT_CONFIG_FILE=.*|BOUT_CONFIG_FILE=/usr/include/mpich-x86_64/bout++/make.config|" $(INSTALL_INCLUDE_PATH)/make.config
ifeq ("", "yes")
	sed -i "s|^MPARK_VARIANT_INCLUDE_PATH=.*|MPARK_VARIANT_INCLUDE_PATH=/usr/include/mpich-x86_64/bout++|" $(INSTALL_INCLUDE_PATH)/make.config
endif
#	Set the make.config as released, so the library isn't rebuild. This way the .a file doesn't need to be preserved/installed
	sed -i '26 i RELEASED                 = yes' $(INSTALL_INCLUDE_PATH)/make.config
uninstall:
	$(PRE_UNINSTALL)     # Pre-uninstall commands follow.
	$(NORMAL_UNINSTALL)  # Normal commands follow.
	$(RM) $(INSTALL_INCLUDE_PATH)/make.config
	$(RM) -r $(DESTDIR)/usr/share/bout++/idllib/
	$(RM) $(DESTDIR)/usr/lib64/mpich/bin/bout-config
	$(RM) $(DESTDIR)/usr/lib64/mpich/bin/bout-log-color
	$(RM) $(DESTDIR)/usr/lib64/mpich/lib/libbout++.a
	$(RM) $(DESTDIR)/usr/lib64/mpich/lib/libpvode.a
	$(RM) $(DESTDIR)/usr/lib64/mpich/lib/libpvpre.a
	$(RM) -r  $(DESTDIR)/usr/include/mpich-x86_64/bout++/
	$(RM) $(DESTDIR)${datarootdir}/locale/*/LC_MESSAGES/libbout.mo
	$(POST_UNINSTALL)    # Post-uninstall commands follow.
####################################################################
# Builds the library with $(OBJ) which is defined from the SOURCEC variable
####################################################################
# Rules for downloading submodules
-include $(BOUT_TOP)/makefile.submodules
ifeq ("$(TARGET)", "libfast")
libfast: makefile $(BOUT_CONFIG_FILE) $(BOUT_TOP)/include $(OBJ) $(DIRS)
endif
ifeq ("$(TARGET)", "lib")
lib: makefile $(BOUT_CONFIG_FILE) $(BOUT_TOP)/include $(BOUT_TOP)/lib $(OBJ)
ifneq ("$(OBJ)foo", "foo")
	@echo "  Adding $(OBJ) to libbout++.a"
	@$(AR) $(ARFLAGS) $(LIB_A) $(OBJ)
	@$(RANLIB) $(LIB)
endif
endif
ifeq ("$(TARGET)", "sub")
LIB=$(MODULE_DIR)/$(SUB_NAME).a
sub: makefile $(BOUT_CONFIG_FILE) $(BOUT_TOP)/include $(BOUT_TOP)/lib $(OBJ)
ifneq ("$(OBJ)foo", "foo")
	@echo "  Adding $(OBJ) to $(LIB)"
	@$(AR) $(ARFLAGS) $(LIB) $(OBJ)
	@$(RANLIB) $(LIB)
endif
endif
runtest:
	./runtest
ifneq ("$(TARGET)", "sub")
ifneq ("$(TARGET)", "libfast")
ifneq ("$(TARGET)", "lib")
ifneq ("$(TARGET)", "runtest")
####################################################################
# Make libbout++.a if it doesn't exist with the checklib target
####################################################################
libbout++.a:
	@echo "Rebuilding out-of-date bout++ library"
	@$(MAKE) --no-print-directory -C $(BOUT_TOP)
 
####################################################################
# Make the target (e.g. gas_compress)
####################################################################
# first we remove a trailing slash, if present. Note that currently we
# dont support several trailing slashes, as in fuu/bar/// 
DIRS_=$(DIRS:%/=%)
# then we extract the directory name, in case it is a longer path
# We are not in a recipe, so # needs to be escaped
# $$ is an escaped $
DIRS__=$(shell for f in $(DIRS_) ; do echo $${f##*/};done)
# now we can generate a list of libraries
SUB_LIBS=$(DIRS__:%=%.a)
$(SUB_LIBS):$(DIRS__)
$(SOURCEC): checklib
$(SOURCEC:%.cxx=%.o): $(LIB)
$(TARGET): makefile $(BOUT_CONFIG_FILE) $(OBJ) $(SUB_LIBS)
	@echo "  Linking" $(TARGET)
	@$(LD) -o $(TARGET) $(OBJ) $(SUB_LIBS) $(BOUT_LIBS) $(LDFLAGS)
checklib:
ifneq ("$(CHANGED)foo", "foo")
	@echo "Rebuilding out-of-date bout++ library"
	@$(MAKE) --no-print-directory -C $(BOUT_TOP)
endif
endif
endif
endif
endif
# Ignore missing requirement files
-include .*.mk
# If it is a libfast target, track changes to rebuild library if needed
#
# Further track dependencies using gcc's -M feature:
# -MF  write the generated dependency rule to a file
# -MG  assume missing headers will be generated and don't stop with an error
# -MM  generate dependency rule for prerequisite, skipping system headers
# -MP  add phony target for each header to prevent errors when header is missing
# -MT  add a target to the generated dependency
# Ignore failure, in case some compiler does not support this
%.o: $(BOUT_CONFIG_FILE) %.cxx
	@echo "  Compiling " $(@:.o=.cxx)
	@$(CXX) $(BOUT_INCLUDE) $(BOUT_FLAGS) -c $(@:.o=.cxx) -o $@
ifeq ("$(TARGET)","libfast")
	test "$@" = "bout++-time.o" || touch $(BOUT_TOP)/lib/.last.o.file
endif
####################################################################
# Clean target. Pretty self explanatory.
# NOTE: See that double colon (::) below? That's signifies a rule that can be added to later
# See:
# http://owen.sj.ca.us/~rk/howto/slides/make/slides/makecolon.html
####################################################################
clean::
	-@$(RM) -rf $(OBJ) $(DEPS) $(TARGET)
	@for pp in $(DIRS) $(DIRS_CLEAN); do echo "  " cleaning $$pp; $(MAKE) --no-print-directory -C $$pp clean; done
	@$(RM) -f $(SUB_LIBS)
	-@$(RM) .*.mk
	@test -f make.config && ( find src | grep '\.o$$' && echo "WARNING: Some object files remain - which might cause issues. Clean with $(MAKE) clean-remove-object-files" ) || exit 0
clean-remove-object-files:
	find src|grep '\.o$$' | xargs rm
distclean:: clean clean-tests
	@echo include cleaned
# Removing the externalpackage installation. When we have more packages, need a better way
	@$(RM) -rf $(BOUT_TOP)/include/pvode
	@echo lib cleaned
	@$(RM) -rf $(BOUT_TOP)/lib/*
	-@$(RM) $(BOUT_TOP)/externalpackages/PVODE/lib/*.a
	-@$(RM) $(BOUT_TOP)/externalpackages/PVODE/source/obj/*.o
	-@$(RM) $(BOUT_TOP)/externalpackages/PVODE/precon/obj/*.o
	-@$(RM) -rf $(BOUT_TOP)/autom4te.cache make.config
	@echo externalpackages cleaned
	@touch $(BOUT_TOP)/configure
	@echo autom4te.cache cleaned
	-@$(RM) $(BOUT_TOP)/tools/pylib/boutconfig/__init__.py
	@echo generated Python boutconfig module cleaned
clean-tests: clean-unit-tests clean-integrated-tests clean-mms-tests
clean-unit-tests:
	@echo "   tests/unit cleaned"
	@$(MAKE) --no-print-directory -C tests/unit clean
clean-integrated-tests:
	@echo "   tests/integrated cleaned"
	@$(MAKE) --no-print-directory -C tests/integrated clean
clean-mms-tests:
	@echo "   tests/MMS cleaned"
	@$(MAKE) --no-print-directory -C tests/MMS clean
####################################################################
# Documentation
####################################################################
MANUAL_DIR=$(BOUT_TOP)/manual
doxygen:
	$(MAKE) -C $(MANUAL_DIR) doxygen
breathe-autogen:
	$(MAKE) -C $(MANUAL_DIR) breathe_autogen
sphinx-docs-html:
	$(MAKE) -C $(MANUAL_DIR) sphinx-html
sphinx-docs-latex:
	$(MAKE) -C $(MANUAL_DIR) sphinx-pdf
manual:
	$(MAKE) -C $(MANUAL_DIR)
manual-html:
	$(MAKE) -C $(MANUAL_DIR) html
manual-pdf:
	$(MAKE) -C $(MANUAL_DIR) pdf
python: libfast
	$(MAKE) -C tools/pylib python3
python2: libfast
	$(MAKE) -C tools/pylib python2
python-all:python python2
######################################################################
# Code coverage
######################################################################
GCOV = 
LCOV = 
GENHTML = 
abs_builddir = /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich
# Code coverage
#
# Optional:
#  - CODE_COVERAGE_DIRECTORY: Top-level directory for code coverage reporting.
#    Multiple directories may be specified, separated by whitespace.
#    (Default: $(top_builddir))
#  - CODE_COVERAGE_OUTPUT_FILE: Filename and path for the .info file generated
#    by lcov for code coverage. (Default:
#    bout-coverage.info)
#  - CODE_COVERAGE_OUTPUT_DIRECTORY: Directory for generated code coverage
#    reports to be created. (Default:
#    bout-coverage)
#  - CODE_COVERAGE_BRANCH_COVERAGE: Set to 1 to enforce branch coverage,
#    set to 0 to disable it and leave empty to stay with the default.
#    (Default: empty)
#  - CODE_COVERAGE_LCOV_SHOPTS_DEFAULT: Extra options shared between both lcov
#    instances. (Default: based on $CODE_COVERAGE_BRANCH_COVERAGE)
#  - CODE_COVERAGE_LCOV_SHOPTS: Extra options to shared between both lcov
#    instances. (Default: $CODE_COVERAGE_LCOV_SHOPTS_DEFAULT)
#  - CODE_COVERAGE_LCOV_OPTIONS_GCOVPATH: --gcov-tool pathtogcov
#  - CODE_COVERAGE_LCOV_OPTIONS_DEFAULT: Extra options to pass to the
#    collecting lcov instance. (Default: $CODE_COVERAGE_LCOV_OPTIONS_GCOVPATH)
#  - CODE_COVERAGE_LCOV_OPTIONS: Extra options to pass to the collecting lcov
#    instance. (Default: $CODE_COVERAGE_LCOV_OPTIONS_DEFAULT)
#  - CODE_COVERAGE_LCOV_RMOPTS_DEFAULT: Extra options to pass to the filtering
#    lcov instance. (Default: empty)
#  - CODE_COVERAGE_LCOV_RMOPTS: Extra options to pass to the filtering lcov
#    instance. (Default: $CODE_COVERAGE_LCOV_RMOPTS_DEFAULT)
#  - CODE_COVERAGE_GENHTML_OPTIONS_DEFAULT: Extra options to pass to the
#    genhtml instance. (Default: based on $CODE_COVERAGE_BRANCH_COVERAGE)
#  - CODE_COVERAGE_GENHTML_OPTIONS: Extra options to pass to the genhtml
#    instance. (Default: $CODE_COVERAGE_GENHTML_OPTIONS_DEFAULT)
#  - CODE_COVERAGE_IGNORE_PATTERN: Extra glob pattern of files to ignore
#
# The generated report will be titled using the $(PACKAGE_NAME) and
# $(PACKAGE_VERSION). In order to add the current git hash to the title,
# use the git-version-gen script, available online.
# Optional variables
CODE_COVERAGE_DIRECTORY ?= $(abs_builddir)
CODE_COVERAGE_OUTPUT_FILE ?= bout-coverage.info
CODE_COVERAGE_OUTPUT_DIRECTORY ?= bout-coverage
CODE_COVERAGE_BRANCH_COVERAGE ?=
CODE_COVERAGE_LCOV_SHOPTS_DEFAULT ?= $(if $(CODE_COVERAGE_BRANCH_COVERAGE),\
--rc lcov_branch_coverage=$(CODE_COVERAGE_BRANCH_COVERAGE))
CODE_COVERAGE_LCOV_SHOPTS ?= $(CODE_COVERAGE_LCOV_SHOPTS_DEFAULT)
CODE_COVERAGE_LCOV_OPTIONS_GCOVPATH ?= --gcov-tool "$(GCOV)"
CODE_COVERAGE_LCOV_OPTIONS_DEFAULT ?= $(CODE_COVERAGE_LCOV_OPTIONS_GCOVPATH)
CODE_COVERAGE_LCOV_OPTIONS ?= $(CODE_COVERAGE_LCOV_OPTIONS_DEFAULT)
CODE_COVERAGE_LCOV_RMOPTS_DEFAULT ?=
CODE_COVERAGE_LCOV_RMOPTS ?= $(CODE_COVERAGE_LCOV_RMOPTS_DEFAULT)
CODE_COVERAGE_GENHTML_OPTIONS_DEFAULT ?=\
$(if $(CODE_COVERAGE_BRANCH_COVERAGE),\
--rc genhtml_branch_coverage=$(CODE_COVERAGE_BRANCH_COVERAGE))
CODE_COVERAGE_GENHTML_OPTIONS ?= $(CODE_COVERAGE_GENHTML_OPTIONS_DEFAULT)
CODE_COVERAGE_IGNORE_PATTERN ?= "*test*/*"
# Use recursive makes in order to ignore errors during check
check-code-coverage:
	@echo "Need to reconfigure with --enable-code-coverage"
# Capture code coverage data
code-coverage-capture: code-coverage-capture-hook
	@echo "Need to reconfigure with --enable-code-coverage"
# Hook rule executed before code-coverage-capture, overridable by the user
code-coverage-capture-hook:
GITIGNOREFILES ?=
GITIGNOREFILES += $(CODE_COVERAGE_OUTPUT_FILE) $(CODE_COVERAGE_OUTPUT_DIRECTORY)
.PHONY: check-code-coverage code-coverage-capture code-coverage-capture-hook code-coverage-clean
+ make -j2 shared
  Compiling  field.cxx
  Compiling  nc_format.cxx
  Compiling  ncxx4.cxx
In file included from ../../include/field.hxx:41,
                 from field.cxx:28:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../include/field.hxx:34:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
In file included from ../../../../include/bout/scorepwrapper.hxx:5,
                 from ../../../../include/bout/deriv_store.hxx:37,
                 from ../../../../include/bout/mesh.hxx:49,
                 from ncxx4.cxx:27:
../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../../../include/dataformat.hxx:40,
                 from ncxx4.hxx:48,
                 from ncxx4.cxx:23:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  field2d.cxx
In file included from /usr/include/mpich-x86_64/ncFile.h:2,
                 from /usr/include/mpich-x86_64/netcdf:16,
                 from ncxx4.hxx:51:
/usr/include/mpich-x86_64/ncGroup.h: At global scope:
/usr/include/mpich-x86_64/ncGroup.h:18:14: warning: 'netCDF::file_id' defined but not used [-Wunused-variable]
   18 |   static int file_id;
      |              ^~~~~~~
In file included from ../../include/field.hxx:41,
                 from ../../include/field2d.hxx:34,
                 from field2d.cxx:33:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../include/dataformat.hxx:40,
                 from ../../include/datafile.hxx:20,
                 from ../../include/globals.hxx:30,
                 from field2d.cxx:31:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  pnetcdf.cxx
  Compiling  h5_format.cxx
  Compiling  field3d.cxx
In file included from ../../../../include/utils.hxx:38,
                 from h5_format.cxx:28:
../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../../../include/dataformat.hxx:40,
                 from ../../../../include/datafile.hxx:20,
                 from ../../../../include/globals.hxx:30,
                 from h5_format.cxx:23:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
In file included from ../../include/field.hxx:41,
                 from ../../include/field3d.hxx:30,
                 from field3d.cxx:33:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../include/dataformat.hxx:40,
                 from ../../include/datafile.hxx:20,
                 from ../../include/globals.hxx:30,
                 from field3d.cxx:29:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  datafile.cxx
In file included from ../../include/bout/scorepwrapper.hxx:5,
                 from ../../include/bout/deriv_store.hxx:37,
                 from ../../include/bout/mesh.hxx:49,
                 from datafile.cxx:39:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../include/dataformat.hxx:40,
                 from ../../include/datafile.hxx:20,
                 from ../../include/globals.hxx:30,
                 from datafile.cxx:38:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  fieldperp.cxx
In file included from ../../include/bout/scorepwrapper.hxx:5,
                 from ../../include/bout/deriv_store.hxx:37,
                 from ../../include/bout/mesh.hxx:49,
                 from fieldperp.cxx:31:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../include/dataformat.hxx:40,
                 from ../../include/datafile.hxx:20,
                 from ../../include/globals.hxx:30,
                 from fieldperp.cxx:27:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  field_data.cxx
In file included from ../../include/bout/scorepwrapper.hxx:5,
                 from ../../include/bout/deriv_store.hxx:37,
                 from ../../include/bout/mesh.hxx:49,
                 from field_data.cxx:2:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from ../../include/msg_stack.hxx:35:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  dataformat.cxx
In file included from ../../include/bout/scorepwrapper.hxx:5,
                 from ../../include/bout/deriv_store.hxx:37,
                 from ../../include/bout/mesh.hxx:49,
                 from dataformat.cxx:2:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from ../../include/msg_stack.hxx:35:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  fieldgroup.cxx
In file included from ../../include/field.hxx:41,
                 from ../../include/field3d.hxx:30,
                 from ../../include/bout/fieldgroup.hxx:5,
                 from fieldgroup.cxx:2:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../include/field_data.hxx:37,
                 from ../../include/bout/fieldgroup.hxx:4:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  formatfactory.cxx
  Compiling  field_factory.cxx
In file included from ../../include/bout/scorepwrapper.hxx:5,
                 from ../../include/bout/deriv_store.hxx:37,
                 from ../../include/bout/mesh.hxx:49,
                 from ../../include/field_factory.hxx:32,
                 from field_factory.cxx:24:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../include/dataformat.hxx:40,
                 from ../../include/datafile.hxx:20,
                 from ../../include/globals.hxx:30,
                 from field_factory.cxx:22:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
In file included from ../../include/utils.hxx:38,
                 from formatfactory.cxx:15:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../include/dataformat.hxx:40,
                 from ../../include/datafile.hxx:20,
                 from ../../include/globals.hxx:30,
                 from formatfactory.cxx:2:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
In file included from /usr/include/mpich-x86_64/ncFile.h:2,
                 from /usr/include/mpich-x86_64/netcdf:16,
                 from impls/netcdf4/ncxx4.hxx:51,
                 from formatfactory.cxx:8:
/usr/include/mpich-x86_64/ncGroup.h: At global scope:
/usr/include/mpich-x86_64/ncGroup.h:18:14: warning: 'netCDF::file_id' defined but not used [-Wunused-variable]
   18 |   static int file_id;
      |              ^~~~~~~
  Compiling  cyclic.cxx
In file included from ../../../../../include/field.hxx:41,
                 from ../../../../../include/field2d.hxx:34,
                 from ../../../../../include/derivs.hxx:32,
                 from cyclic.cxx:38:
../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../../../../include/field.hxx:34:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  invert_parderiv.cxx
In file included from ../../../include/field.hxx:41,
                 from ../../../include/field3d.hxx:30,
                 from ../../../include/invert_parderiv.hxx:34,
                 from invert_parderiv.cxx:30:
../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../../include/field.hxx:34:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  parderiv_factory.cxx
  Compiling  fieldgenerators.cxx
In file included from ../../include/bout/scorepwrapper.hxx:5,
                 from ../../include/bout/deriv_store.hxx:37,
                 from ../../include/bout/mesh.hxx:49,
                 from ../../include/field_factory.hxx:32,
                 from fieldgenerators.hxx:11,
                 from fieldgenerators.cxx:2:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from ../../include/boutexception.hxx:7,
                 from fieldgenerators.hxx:10:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
In file included from ../../../include/field.hxx:41,
                 from ../../../include/field3d.hxx:30,
                 from ../../../include/invert_parderiv.hxx:34,
                 from parderiv_factory.cxx:3:
../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../../include/field.hxx:34:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  serial_tri.cxx
In file included from ../../../../../include/field.hxx:41,
                 from ../../../../../include/fieldperp.hxx:31,
                 from ../../../../../include/invert_laplace.hxx:41,
                 from serial_tri.hxx:32,
                 from serial_tri.cxx:28:
../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../../../../include/dataformat.hxx:40,
                 from ../../../../../include/datafile.hxx:20,
                 from ../../../../../include/globals.hxx:30,
                 from serial_tri.cxx:27:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  initialprofiles.cxx
In file included from ../../include/bout/scorepwrapper.hxx:5,
                 from ../../include/bout/deriv_store.hxx:37,
                 from ../../include/bout/mesh.hxx:49,
                 from initialprofiles.cxx:39:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from ../../include/msg_stack.hxx:35:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  serial_band.cxx
In file included from ../../../../../include/field.hxx:41,
                 from ../../../../../include/fieldperp.hxx:31,
                 from ../../../../../include/invert_laplace.hxx:41,
                 from serial_band.hxx:32,
                 from serial_band.cxx:28:
../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../../../../include/dataformat.hxx:40,
                 from ../../../../../include/datafile.hxx:20,
                 from ../../../../../include/globals.hxx:30,
                 from serial_band.cxx:27:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  vecops.cxx
In file included from ../../include/bout/scorepwrapper.hxx:5,
                 from ../../include/bout/deriv_store.hxx:37,
                 from ../../include/bout/mesh.hxx:49,
                 from vecops.cxx:27:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from ../../include/msg_stack.hxx:35:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  pdd.cxx
In file included from ../../../../../include/bout/bout_enum_class.hxx:27,
                 from ../../../../../include/fft.hxx:33,
                 from pdd.cxx:34:
../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from ../../../../../include/boutexception.hxx:7,
                 from pdd.cxx:33:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  vector2d.cxx
In file included from ../../include/field.hxx:41,
                 from ../../include/field2d.hxx:34,
                 from ../../include/vector2d.hxx:40,
                 from vector2d.cxx:33:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../include/dataformat.hxx:40,
                 from ../../include/datafile.hxx:20,
                 from ../../include/globals.hxx:30,
                 from vector2d.cxx:31:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  spt.cxx
In file included from ../../../../../include/bout/scorepwrapper.hxx:5,
                 from ../../../../../include/bout/deriv_store.hxx:37,
                 from ../../../../../include/bout/mesh.hxx:49,
                 from spt.cxx:35:
../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from ../../../../../include/msg_stack.hxx:35:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  vector3d.cxx
In file included from ../../include/field.hxx:41,
                 from ../../include/field3d.hxx:30,
                 from ../../include/vector3d.hxx:37,
                 from vector3d.cxx:33:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../include/dataformat.hxx:40,
                 from ../../include/datafile.hxx:20,
                 from ../../include/globals.hxx:30,
                 from vector3d.cxx:31:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  petsc_laplace.cxx
In file included from ../../../../../include/utils.hxx:38,
                 from ../../../../../include/options.hxx:45,
                 from petsc_laplace.hxx:66,
                 from petsc_laplace.cxx:28:
../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../../../../include/dataformat.hxx:40,
                 from ../../../../../include/datafile.hxx:20,
                 from ../../../../../include/globals.hxx:30,
                 from petsc_laplace.hxx:63:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  where.cxx
In file included from ../../include/bout/scorepwrapper.hxx:5,
                 from ../../include/bout/deriv_store.hxx:37,
                 from ../../include/bout/mesh.hxx:49,
                 from where.cxx:26:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from ../../include/msg_stack.hxx:35:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  globalfield.cxx
In file included from ../../include/bout/scorepwrapper.hxx:5,
                 from ../../include/bout/deriv_store.hxx:37,
                 from ../../include/bout/mesh.hxx:49,
                 from ../../include/bout/globalfield.hxx:12,
                 from globalfield.cxx:2:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from ../../include/msg_stack.hxx:35:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  mumps_laplace.cxx
In file included from ../../../../../include/field.hxx:41,
                 from ../../../../../include/fieldperp.hxx:31,
                 from ../../../../../include/invert_laplace.hxx:41,
                 from mumps_laplace.hxx:31,
                 from mumps_laplace.cxx:26:
../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../../../../include/field.hxx:34:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  generated_fieldops.cxx
  Compiling  cyclic_laplace.cxx
In file included from ../../include/bout/scorepwrapper.hxx:5,
                 from ../../include/bout/deriv_store.hxx:37,
                 from ../../include/bout/mesh.hxx:49,
                 from generated_fieldops.cxx:2:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from ../../include/msg_stack.hxx:35:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
In file included from ../../../../../include/bout/scorepwrapper.hxx:5,
                 from ../../../../../include/bout/deriv_store.hxx:37,
                 from ../../../../../include/bout/mesh.hxx:49,
                 from cyclic_laplace.cxx:38:
../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../../../../include/dataformat.hxx:40,
                 from ../../../../../include/datafile.hxx:20,
                 from ../../../../../include/globals.hxx:30,
                 from cyclic_laplace.cxx:36:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  shoot_laplace.cxx
In file included from ../../../../../include/field.hxx:41,
                 from ../../../../../include/fieldperp.hxx:31,
                 from ../../../../../include/invert_laplace.hxx:41,
                 from shoot_laplace.hxx:33,
                 from shoot_laplace.cxx:34:
../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../../../../include/field.hxx:34:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  boutmesh.cxx
In file included from ../../../../include/bout/scorepwrapper.hxx:5,
                 from ../../../../include/bout/deriv_store.hxx:37,
                 from ../../../../include/bout/mesh.hxx:49,
                 from boutmesh.hxx:7,
                 from boutmesh.cxx:36:
../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from ../../../../include/msg_stack.hxx:35:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  multigrid_laplace.cxx
In file included from ../../../../../include/utils.hxx:38,
                 from ../../../../../include/options.hxx:45,
                 from multigrid_laplace.hxx:38,
                 from multigrid_laplace.cxx:30:
../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../../../../include/dataformat.hxx:40,
                 from ../../../../../include/datafile.hxx:20,
                 from ../../../../../include/globals.hxx:30,
                 from multigrid_laplace.hxx:36:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../../../include/bout/array.hxx:31,
                 from ../../../../include/utils.hxx:36,
                 from ../../../../include/options.hxx:45,
                 from ../../../../include/bout/deriv_store.hxx:42:
In member function 'std::__shared_ptr<ArrayData<double>, (__gnu_cxx::_Lock_policy)2>::operator bool() const',
    inlined from 'std::operator==<ArrayData<double> >(std::shared_ptr<ArrayData<double> > const&, decltype(nullptr))bool' at /usr/include/c++/13/bits/shared_ptr.h:562:14,
    inlined from 'Array<double, ArrayData<double> >::empty() const' at ../../../../include/bout/array.hxx:202:16,
    inlined from 'Field3D::isAllocated() const' at ../../../../include/field3d.hxx:206:48,
    inlined from 'BoutMesh::pack_data(std::vector<FieldData*, std::allocator<FieldData*> > const&, int, int, int, int, double*)' at boutmesh.cxx:2029:7:
/usr/include/c++/13/bits/shared_ptr_base.h:1670:16: warning: potential null pointer dereference [-Wnull-dereference]
 1670 |       { return _M_ptr != nullptr; }
      |                ^~~~~~
In member function 'std::__shared_ptr<ArrayData<double>, (__gnu_cxx::_Lock_policy)2>::operator bool() const',
    inlined from 'std::operator==<ArrayData<double> >(std::shared_ptr<ArrayData<double> > const&, decltype(nullptr))bool' at /usr/include/c++/13/bits/shared_ptr.h:562:14,
    inlined from 'Array<double, ArrayData<double> >::empty() const' at ../../../../include/bout/array.hxx:202:16,
    inlined from 'Field2D::isAllocated() const' at ../../../../include/field2d.hxx:104:48,
    inlined from 'BoutMesh::pack_data(std::vector<FieldData*, std::allocator<FieldData*> > const&, int, int, int, int, double*)' at boutmesh.cxx:2040:7:
/usr/include/c++/13/bits/shared_ptr_base.h:1670:16: warning: potential null pointer dereference [-Wnull-dereference]
 1670 |       { return _M_ptr != nullptr; }
      |                ^~~~~~
  Compiling  multigrid_alg.cxx
In file included from ../../../../../include/utils.hxx:38,
                 from ../../../../../include/options.hxx:45,
                 from multigrid_laplace.hxx:38,
                 from multigrid_alg.cxx:30:
../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../../../../include/dataformat.hxx:40,
                 from ../../../../../include/datafile.hxx:20,
                 from ../../../../../include/globals.hxx:30,
                 from multigrid_laplace.hxx:36:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  shiftedmetric.cxx
In file included from ../../../include/bout/scorepwrapper.hxx:5,
                 from ../../../include/bout/deriv_store.hxx:37,
                 from ../../../include/bout/mesh.hxx:49,
                 from shiftedmetric.cxx:10:
../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from ../../../include/msg_stack.hxx:35:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  multigrid_solver.cxx
In file included from ../../../../../include/utils.hxx:38,
                 from ../../../../../include/options.hxx:45,
                 from multigrid_laplace.hxx:38,
                 from multigrid_solver.cxx:30:
../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../../../../include/dataformat.hxx:40,
                 from ../../../../../include/datafile.hxx:20,
                 from ../../../../../include/globals.hxx:30,
                 from multigrid_laplace.hxx:36:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  fci.cxx
  Compiling  naulin_laplace.cxx
In file included from ../../../../../include/bout/scorepwrapper.hxx:5,
                 from ../../../../../include/bout/deriv_store.hxx:37,
                 from ../../../../../include/bout/mesh.hxx:49,
                 from naulin_laplace.cxx:140:
../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from ../../../../../include/boutexception.hxx:7,
                 from naulin_laplace.cxx:139:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
In file included from ../../../include/field.hxx:41,
                 from ../../../include/field3d.hxx:30,
                 from ../../../include/bout/paralleltransform.hxx:10,
                 from fci.hxx:29,
                 from fci.cxx:39:
../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../../include/field.hxx:34:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  identity.cxx
In file included from ../../../include/bout/scorepwrapper.hxx:5,
                 from ../../../include/bout/deriv_store.hxx:37,
                 from ../../../include/bout/mesh.hxx:49,
                 from identity.cxx:9:
../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from ../../../include/msg_stack.hxx:35:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  invert_laplace.cxx
In file included from ../../../include/bout/scorepwrapper.hxx:5,
                 from ../../../include/bout/deriv_store.hxx:37,
                 from ../../../include/bout/mesh.hxx:49,
                 from invert_laplace.cxx:34:
../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from ../../../include/msg_stack.hxx:35:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  gridfromoptions.cxx
invert_laplace.cxx: In constructor 'Laplacian::Laplacian(Options*, CELL_LOC, Mesh*)':
invert_laplace.cxx:100:24: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations]
  100 |     Laplacian::setFlags(flags);
      |     ~~~~~~~~~~~~~~~~~~~^~~~~~~
In file included from invert_laplace.cxx:36:
../../../include/invert_laplace.hxx:189:16: note: declared here
  189 |   virtual void setFlags(int f);
      |                ^~~~~~~~
invert_laplace.cxx: In function 'int invert_laplace(const FieldPerp&, FieldPerp&, int, const Field2D*, const Field2D*, const Field2D*)':
invert_laplace.cxx:770:16: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations]
  770 |   lap->setFlags(flags);
      |   ~~~~~~~~~~~~~^~~~~~~
../../../include/invert_laplace.hxx:189:16: note: declared here
  189 |   virtual void setFlags(int f);
      |                ^~~~~~~~
invert_laplace.cxx: In function 'int invert_laplace(const Field3D&, Field3D&, int, const Field2D*, const Field2D*, const Field2D*)':
invert_laplace.cxx:800:16: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations]
  800 |   lap->setFlags(flags);
      |   ~~~~~~~~~~~~~^~~~~~~
../../../include/invert_laplace.hxx:189:16: note: declared here
  189 |   virtual void setFlags(int f);
      |                ^~~~~~~~
invert_laplace.cxx: In function 'const Field3D invert_laplace(const Field3D&, int, const Field2D*, const Field2D*, const Field2D*)':
invert_laplace.cxx:831:16: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations]
  831 |   lap->setFlags(flags);
      |   ~~~~~~~~~~~~~^~~~~~~
../../../include/invert_laplace.hxx:189:16: note: declared here
  189 |   virtual void setFlags(int f);
      |                ^~~~~~~~
In file included from ../../../include/utils.hxx:38,
                 from ../../../include/options.hxx:45,
                 from ../../../include/bout/griddata.hxx:31,
                 from gridfromoptions.cxx:2:
../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/stdexcept:38,
                 from /usr/include/c++/13/system_error:43,
                 from /usr/include/c++/13/bits/ios_base.h:46,
                 from /usr/include/c++/13/streambuf:43,
                 from ../../../include/multiostream.hxx:4,
                 from ../../../include/output.hxx:32,
                 from ../../../include/options.hxx:44:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  gridfromfile.cxx
  Compiling  laplacefactory.cxx
In file included from ../../../include/utils.hxx:38,
                 from ../../../include/options.hxx:45,
                 from ../../../include/bout/griddata.hxx:31,
                 from gridfromfile.cxx:3:
../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/stdexcept:38,
                 from /usr/include/c++/13/system_error:43,
                 from /usr/include/c++/13/bits/ios_base.h:46,
                 from /usr/include/c++/13/streambuf:43,
                 from ../../../include/multiostream.hxx:4,
                 from ../../../include/output.hxx:32,
                 from ../../../include/options.hxx:44:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
In file included from ../../../include/field.hxx:41,
                 from ../../../include/fieldperp.hxx:31,
                 from ../../../include/invert_laplace.hxx:41,
                 from laplacefactory.hxx:7,
                 from laplacefactory.cxx:6:
../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../../include/dataformat.hxx:40,
                 from ../../../include/datafile.hxx:20,
                 from ../../../include/globals.hxx:30,
                 from laplacefactory.cxx:2:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  bilinear.cxx
  Compiling  laplacexy.cxx
In file included from ../../../include/bout/scorepwrapper.hxx:5,
                 from ../../../include/bout/deriv_store.hxx:37,
                 from ../../../include/bout/mesh.hxx:49,
                 from bilinear.cxx:23:
../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from ../../../include/msg_stack.hxx:35:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
In file included from ../../../include/bout/scorepwrapper.hxx:5,
                 from ../../../include/bout/deriv_store.hxx:37,
                 from ../../../include/bout/mesh.hxx:49,
                 from ../../../include/bout/invert/laplacexy.hxx:69,
                 from laplacexy.cxx:6:
../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ios:41,
                 from /usr/include/c++/13/istream:40,
                 from /usr/include/c++/13/sstream:40,
                 from /usr/include/c++/13/complex:45,
                 from /usr/include/mpich-x86_64/petsc/petscsystypes.h:315,
                 from /usr/include/mpich-x86_64/petsc/petscsys.h:47,
                 from /usr/include/mpich-x86_64/petsc/petscvec.h:9,
                 from /usr/include/mpich-x86_64/petsc/petscmat.h:6,
                 from /usr/include/mpich-x86_64/petsc/petscpc.h:6,
                 from /usr/include/mpich-x86_64/petsc/petscksp.h:6,
                 from laplacexy.cxx:4:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  hermite_spline.cxx
In file included from ../../../include/field.hxx:41,
                 from ../../../include/field3d.hxx:30,
                 from ../../../include/interpolation.hxx:31,
                 from hermite_spline.cxx:24:
../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../../include/dataformat.hxx:40,
                 from ../../../include/datafile.hxx:20,
                 from ../../../include/globals.hxx:30,
                 from hermite_spline.cxx:23:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  laplacexz-cyclic.cxx
In file included from ../../../../../include/utils.hxx:38,
                 from ../../../../../include/options.hxx:45,
                 from ../../../../../include/bout/invert/laplacexz.hxx:34,
                 from laplacexz-cyclic.hxx:2,
                 from laplacexz-cyclic.cxx:1:
../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/stdexcept:38,
                 from /usr/include/c++/13/system_error:43,
                 from /usr/include/c++/13/bits/ios_base.h:46,
                 from /usr/include/c++/13/streambuf:43,
                 from ../../../../../include/multiostream.hxx:4,
                 from ../../../../../include/output.hxx:32,
                 from ../../../../../include/options.hxx:44:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  monotonic_hermite_spline.cxx
In file included from ../../../include/field.hxx:41,
                 from ../../../include/field3d.hxx:30,
                 from ../../../include/interpolation.hxx:31,
                 from monotonic_hermite_spline.cxx:24:
../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../../include/dataformat.hxx:40,
                 from ../../../include/datafile.hxx:20,
                 from ../../../include/globals.hxx:30,
                 from monotonic_hermite_spline.cxx:23:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  laplacexz-petsc.cxx
  Compiling  lagrange_4pt.cxx
In file included from ../../../../../include/utils.hxx:38,
                 from ../../../../../include/options.hxx:45,
                 from ../../../../../include/bout/invert/laplacexz.hxx:34,
                 from laplacexz-petsc.hxx:12,
                 from laplacexz-petsc.cxx:11:
../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/stdexcept:38,
                 from /usr/include/c++/13/system_error:43,
                 from /usr/include/c++/13/bits/ios_base.h:46,
                 from /usr/include/c++/13/streambuf:43,
                 from ../../../../../include/multiostream.hxx:4,
                 from ../../../../../include/output.hxx:32,
                 from ../../../../../include/options.hxx:44:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
In file included from ../../../include/bout/scorepwrapper.hxx:5,
                 from ../../../include/bout/deriv_store.hxx:37,
                 from ../../../include/bout/mesh.hxx:49,
                 from lagrange_4pt.cxx:23:
../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from ../../../include/msg_stack.hxx:35:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  interpolation_factory.cxx
In file included from ../../../include/field.hxx:41,
                 from ../../../include/field3d.hxx:30,
                 from ../../../include/interpolation.hxx:31,
                 from ../../../include/interpolation_factory.hxx:4,
                 from interpolation_factory.cxx:1:
../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../../include/field.hxx:34:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  laplacexz.cxx
In file included from ../../../include/utils.hxx:38,
                 from ../../../include/options.hxx:45,
                 from ../../../include/bout/invert/laplacexz.hxx:34,
                 from impls/cyclic/laplacexz-cyclic.hxx:2,
                 from laplacexz.cxx:1:
../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/stdexcept:38,
                 from /usr/include/c++/13/system_error:43,
                 from /usr/include/c++/13/bits/ios_base.h:46,
                 from /usr/include/c++/13/streambuf:43,
                 from ../../../include/multiostream.hxx:4,
                 from ../../../include/output.hxx:32,
                 from ../../../include/options.hxx:44:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  difops.cxx
In file included from ../../include/utils.hxx:38,
                 from ../../include/options.hxx:45,
                 from ../../include/bout/solver.hxx:42,
                 from difops.cxx:27:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../include/dataformat.hxx:40,
                 from ../../include/datafile.hxx:20,
                 from ../../include/globals.hxx:30,
                 from difops.cxx:26:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  fft_fftw.cxx
In file included from ../../include/utils.hxx:38,
                 from ../../include/options.hxx:45,
                 from fft_fftw.cxx:29:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../include/dataformat.hxx:40,
                 from ../../include/datafile.hxx:20,
                 from ../../include/globals.hxx:30,
                 from fft_fftw.cxx:28:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  interpolation.cxx
In file included from ../../include/field.hxx:41,
                 from ../../include/field3d.hxx:30,
                 from ../../include/interpolation.hxx:31,
                 from interpolation.cxx:27:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../include/dataformat.hxx:40,
                 from ../../include/datafile.hxx:20,
                 from ../../include/globals.hxx:30,
                 from interpolation.cxx:26:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  lapack_routines.cxx
In file included from ../../include/utils.hxx:38,
                 from lapack_routines.cxx:41:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../include/dataformat.hxx:40,
                 from ../../include/datafile.hxx:20,
                 from ../../include/globals.hxx:30,
                 from lapack_routines.cxx:38:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  physicsmodel.cxx
  Compiling  mesh.cxx
In file included from ../../include/field.hxx:41,
                 from ../../include/field3d.hxx:30,
                 from ../../include/difops.hxx:39,
                 from ../../include/bout.hxx:41,
                 from ../../include/bout/physicsmodel.hxx:40,
                 from physicsmodel.cxx:32:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../include/dataformat.hxx:40,
                 from ../../include/datafile.hxx:20,
                 from ../../include/bout.hxx:40:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
In file included from ../../include/bout/scorepwrapper.hxx:5,
                 from ../../include/bout/deriv_store.hxx:37,
                 from ../../include/bout/mesh.hxx:49,
                 from mesh.cxx:3:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../include/dataformat.hxx:40,
                 from ../../include/datafile.hxx:20,
                 from ../../include/globals.hxx:30,
                 from mesh.cxx:2:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  smoothing.cxx
In file included from ../../include/bout/scorepwrapper.hxx:5,
                 from ../../include/bout/deriv_store.hxx:37,
                 from ../../include/bout/mesh.hxx:49,
                 from smoothing.cxx:35:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from ../../include/msg_stack.hxx:35:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  sourcex.cxx
In file included from ../../include/bout/scorepwrapper.hxx:5,
                 from ../../include/bout/deriv_store.hxx:37,
                 from ../../include/bout/mesh.hxx:49,
                 from sourcex.cxx:8:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../include/dataformat.hxx:40,
                 from ../../include/datafile.hxx:20,
                 from ../../include/globals.hxx:30,
                 from sourcex.cxx:5:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  boundary_standard.cxx
  Compiling  gyro_average.cxx
In file included from ../../include/bout/scorepwrapper.hxx:5,
                 from ../../include/bout/deriv_store.hxx:37,
                 from ../../include/bout/mesh.hxx:49,
                 from boundary_standard.cxx:1:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from ../../include/msg_stack.hxx:35:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
In file included from ../../include/bout/scorepwrapper.hxx:5,
                 from ../../include/bout/deriv_store.hxx:37,
                 from ../../include/bout/mesh.hxx:49,
                 from gyro_average.cxx:30:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from ../../include/msg_stack.hxx:35:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
gyro_average.cxx: In function 'Field3D gyroPade0(const Field3D&, BoutReal, int)':
gyro_average.cxx:170:16: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations]
  170 |   lap->setFlags(flags);
      |   ~~~~~~~~~~~~~^~~~~~~
In file included from ../../include/gyro_average.hxx:36,
                 from gyro_average.cxx:34:
../../include/invert_laplace.hxx:189:16: note: declared here
  189 |   virtual void setFlags(int f);
      |                ^~~~~~~~
gyro_average.cxx: In function 'Field3D gyroPade0(const Field3D&, const Field2D&, int)':
gyro_average.cxx:187:16: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations]
  187 |   lap->setFlags(flags);
      |   ~~~~~~~~~~~~~^~~~~~~
../../include/invert_laplace.hxx:189:16: note: declared here
  189 |   virtual void setFlags(int f);
      |                ^~~~~~~~
gyro_average.cxx: In function 'Field3D gyroPade0(const Field3D&, const Field3D&, int)':
gyro_average.cxx:194:19: warning: 'Field3D gyroPade0(const Field3D&, const Field2D&, int)' is deprecated: Please use version with separate inner_boundary_flags and outer_boundary_flags [-Wdeprecated-declarations]
  194 |   return gyroPade0(f, DC(rho), flags);
      |          ~~~~~~~~~^~~~~~~~~~~~~~~~~~~
gyro_average.cxx:175:9: note: declared here
  175 | Field3D gyroPade0(const Field3D& f, const Field2D& rho, int flags) {
      |         ^~~~~~~~~
gyro_average.cxx: In function 'Field3D gyroPade1(const Field3D&, BoutReal, int)':
gyro_average.cxx:209:16: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations]
  209 |   lap->setFlags(flags);
      |   ~~~~~~~~~~~~~^~~~~~~
../../include/invert_laplace.hxx:189:16: note: declared here
  189 |   virtual void setFlags(int f);
      |                ^~~~~~~~
gyro_average.cxx: In function 'Field3D gyroPade1(const Field3D&, const Field2D&, int)':
gyro_average.cxx:226:16: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations]
  226 |   lap->setFlags(flags);
      |   ~~~~~~~~~~~~~^~~~~~~
../../include/invert_laplace.hxx:189:16: note: declared here
  189 |   virtual void setFlags(int f);
      |                ^~~~~~~~
gyro_average.cxx: In function 'Field3D gyroPade1(const Field3D&, const Field3D&, int)':
gyro_average.cxx:232:19: warning: 'Field3D gyroPade1(const Field3D&, const Field2D&, int)' is deprecated: Please use version with separate inner_boundary_flags and outer_boundary_flags [-Wdeprecated-declarations]
  232 |   return gyroPade1(f, DC(rho), flags);
      |          ~~~~~~~~~^~~~~~~~~~~~~~~~~~~
gyro_average.cxx:214:9: note: declared here
  214 | Field3D gyroPade1(const Field3D& f, const Field2D& rho, int flags) {
      |         ^~~~~~~~~
gyro_average.cxx: In function 'Field2D gyroPade1(const Field2D&, const Field2D&, int)':
gyro_average.cxx:238:18: warning: 'Field3D gyroPade1(const Field3D&, const Field2D&, int)' is deprecated: Please use version with separate inner_boundary_flags and outer_boundary_flags [-Wdeprecated-declarations]
  238 |   tmp = gyroPade1(tmp, rho, flags);
      |         ~~~~~~~~~^~~~~~~~~~~~~~~~~
gyro_average.cxx:214:9: note: declared here
  214 | Field3D gyroPade1(const Field3D& f, const Field2D& rho, int flags) {
      |         ^~~~~~~~~
gyro_average.cxx: In function 'Field3D gyroPade2(const Field3D&, BoutReal, int)':
gyro_average.cxx:243:39: warning: 'Field3D gyroPade1(const Field3D&, BoutReal, int)' is deprecated: Please use version with separate inner_boundary_flags and outer_boundary_flags [-Wdeprecated-declarations]
  243 |   Field3D result = gyroPade1(gyroPade1(f, rho, flags), rho, flags);
      |                              ~~~~~~~~~^~~~~~~~~~~~~~~
gyro_average.cxx:197:9: note: declared here
  197 | Field3D gyroPade1(const Field3D& f, BoutReal rho, int flags) {
      |         ^~~~~~~~~
gyro_average.cxx:243:29: warning: 'Field3D gyroPade1(const Field3D&, BoutReal, int)' is deprecated: Please use version with separate inner_boundary_flags and outer_boundary_flags [-Wdeprecated-declarations]
  243 |   Field3D result = gyroPade1(gyroPade1(f, rho, flags), rho, flags);
      |                    ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gyro_average.cxx:197:9: note: declared here
  197 | Field3D gyroPade1(const Field3D& f, BoutReal rho, int flags) {
      |         ^~~~~~~~~
gyro_average.cxx: In function 'Field3D gyroPade2(const Field3D&, const Field2D&, int)':
gyro_average.cxx:251:39: warning: 'Field3D gyroPade1(const Field3D&, const Field2D&, int)' is deprecated: Please use version with separate inner_boundary_flags and outer_boundary_flags [-Wdeprecated-declarations]
  251 |   Field3D result = gyroPade1(gyroPade1(f, rho, flags), rho, flags);
      |                              ~~~~~~~~~^~~~~~~~~~~~~~~
gyro_average.cxx:214:9: note: declared here
  214 | Field3D gyroPade1(const Field3D& f, const Field2D& rho, int flags) {
      |         ^~~~~~~~~
gyro_average.cxx:251:29: warning: 'Field3D gyroPade1(const Field3D&, const Field2D&, int)' is deprecated: Please use version with separate inner_boundary_flags and outer_boundary_flags [-Wdeprecated-declarations]
  251 |   Field3D result = gyroPade1(gyroPade1(f, rho, flags), rho, flags);
      |                    ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gyro_average.cxx:214:9: note: declared here
  214 | Field3D gyroPade1(const Field3D& f, const Field2D& rho, int flags) {
      |         ^~~~~~~~~
gyro_average.cxx: In function 'Field3D gyroPade2(const Field3D&, const Field3D&, int)':
gyro_average.cxx:260:19: warning: 'Field3D gyroPade2(const Field3D&, const Field2D&, int)' is deprecated: Please use version with separate inner_boundary_flags and outer_boundary_flags [-Wdeprecated-declarations]
  260 |   return gyroPade2(f, DC(rho), flags);
      |          ~~~~~~~~~^~~~~~~~~~~~~~~~~~~
gyro_average.cxx:250:9: note: declared here
  250 | Field3D gyroPade2(const Field3D& f, const Field2D& rho, int flags) {
      |         ^~~~~~~~~
  Compiling  snb.cxx
In file included from ../../include/field.hxx:41,
                 from ../../include/field3d.hxx:30,
                 from ../../include/invert_parderiv.hxx:34,
                 from ../../include/bout/snb.hxx:1,
                 from snb.cxx:4:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../include/field.hxx:34:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  arkode.cxx
In file included from ../../../../include/utils.hxx:38,
                 from ../../../../include/options.hxx:45,
                 from ../../../../include/bout/solver.hxx:42,
                 from arkode.hxx:35,
                 from arkode.cxx:28:
../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from ../../../../include/boutexception.hxx:7,
                 from ../../../../include/bout/solver.hxx:40:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  boundary_factory.cxx
In file included from ../../include/field.hxx:41,
                 from ../../include/field2d.hxx:34,
                 from ../../include/boundary_op.hxx:9,
                 from ../../include/boundary_factory.hxx:7,
                 from boundary_factory.cxx:2:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../include/dataformat.hxx:40,
                 from ../../include/datafile.hxx:20,
                 from ../../include/globals.hxx:30,
                 from boundary_factory.cxx:1:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  pvode.cxx
In file included from ../../../../include/utils.hxx:38,
                 from ../../../../include/options.hxx:45,
                 from ../../../../include/bout/solver.hxx:42,
                 from pvode.hxx:34,
                 from pvode.cxx:26:
../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from ../../../../include/boutexception.hxx:7,
                 from ../../../../include/bout/solver.hxx:40:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  boundary_region.cxx
In file included from ../../include/bout/scorepwrapper.hxx:5,
                 from ../../include/bout/deriv_store.hxx:37,
                 from ../../include/bout/mesh.hxx:49,
                 from boundary_region.cxx:2:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from ../../include/msg_stack.hxx:35:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  meshfactory.cxx
In file included from ../../include/bout/scorepwrapper.hxx:5,
                 from ../../include/bout/deriv_store.hxx:37,
                 from ../../include/bout/mesh.hxx:49,
                 from meshfactory.hxx:7,
                 from meshfactory.cxx:2:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from ../../include/msg_stack.hxx:35:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  cvode.cxx
In file included from ../../../../include/utils.hxx:38,
                 from ../../../../include/options.hxx:45,
                 from ../../../../include/bout/solver.hxx:42,
                 from cvode.hxx:34,
                 from cvode.cxx:27:
../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from ../../../../include/boutexception.hxx:7,
                 from ../../../../include/bout/solver.hxx:40:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  surfaceiter.cxx
In file included from ../../include/bout/scorepwrapper.hxx:5,
                 from ../../include/bout/deriv_store.hxx:37,
                 from ../../include/bout/mesh.hxx:49,
                 from ../../include/bout/surfaceiter.hxx:10,
                 from surfaceiter.cxx:2:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from ../../include/msg_stack.hxx:35:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  coordinates.cxx
In file included from ../../include/field.hxx:41,
                 from ../../include/field3d.hxx:30,
                 from ../../include/bout/paralleltransform.hxx:10,
                 from ../../include/bout/coordinates.hxx:36,
                 from coordinates.cxx:9:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from ../../include/bout/../boutexception.hxx:7,
                 from ../../include/bout/assert.hxx:20,
                 from coordinates.cxx:7:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  ida.cxx
In file included from ../../../../include/utils.hxx:38,
                 from ../../../../include/options.hxx:45,
                 from ../../../../include/bout/solver.hxx:42,
                 from ida.hxx:35,
                 from ida.cxx:30:
../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from ../../../../include/boutexception.hxx:7,
                 from ../../../../include/bout/solver.hxx:40:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  petsc.cxx
In file included from ../../../../include/field.hxx:41,
                 from ../../../../include/field2d.hxx:34,
                 from petsc.hxx:36,
                 from petsc.cxx:27:
../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ios:41,
                 from /usr/include/c++/13/istream:40,
                 from /usr/include/c++/13/sstream:40,
                 from /usr/include/c++/13/complex:45,
                 from /usr/include/mpich-x86_64/petsc/petscsystypes.h:315,
                 from /usr/include/mpich-x86_64/petsc/petscsys.h:47,
                 from /usr/include/mpich-x86_64/petsc/petscbag.h:4,
                 from /usr/include/mpich-x86_64/petsc/petsc.h:5,
                 from petsc.hxx:34:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
petsc.cxx: In function 'PetscErrorCode PetscMonitor(TS, PetscInt, PetscReal, Vec, void*)':
petsc.cxx:838:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
  838 |     if (s->interpolate) ierr = TSInterpolate(ts,s->next_output,interpolatedX);CHKERRQ(ierr);
      |     ^~
In file included from /usr/include/mpich-x86_64/petsc/petscsys.h:1207:
/usr/include/mpich-x86_64/petsc/petscerror.h:336:24: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
  336 | #define PetscCall(...) do {                                                                    \
      |                        ^~
/usr/include/mpich-x86_64/petsc/petscerror.h:368:22: note: in expansion of macro 'PetscCall'
  368 | #define CHKERRQ(...) PetscCall(__VA_ARGS__)
      |                      ^~~~~~~~~
petsc.cxx:838:79: note: in expansion of macro 'CHKERRQ'
  838 |     if (s->interpolate) ierr = TSInterpolate(ts,s->next_output,interpolatedX);CHKERRQ(ierr);
      |                                                                               ^~~~~~~
  Compiling  snes.cxx
In file included from ../../../../include/bout/bout_enum_class.hxx:27,
                 from snes.hxx:38,
                 from snes.cxx:4:
../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from ../../../../include/boutexception.hxx:7,
                 from ../../../../include/bout/bout_enum_class.hxx:26:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  index_derivs.cxx
In file included from ../../include/bout/scorepwrapper.hxx:5,
                 from ../../include/bout/deriv_store.hxx:37,
                 from ../../include/bout/index_derivs.hxx:37,
                 from index_derivs.cxx:24:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ios:41,
                 from /usr/include/c++/13/ostream:40,
                 from /usr/include/c++/13/iostream:41,
                 from ../../include/bout/index_derivs.hxx:33:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  imex-bdf2.cxx
In file included from ../../../../include/utils.hxx:38,
                 from ../../../../include/options.hxx:45,
                 from ../../../../include/bout/solver.hxx:42,
                 from imex-bdf2.hxx:45,
                 from imex-bdf2.cxx:4:
../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from ../../../../include/boutexception.hxx:7,
                 from ../../../../include/bout/solver.hxx:40:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  power.cxx
In file included from ../../../../include/utils.hxx:38,
                 from ../../../../include/options.hxx:45,
                 from ../../../../include/bout/solver.hxx:42,
                 from power.hxx:33,
                 from power.cxx:3:
../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from ../../../../include/boutexception.hxx:7,
                 from ../../../../include/bout/solver.hxx:40:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  slepc.cxx
  Compiling  adams_bashforth.cxx
In file included from ../../../../include/utils.hxx:38,
                 from ../../../../include/options.hxx:45,
                 from ../../../../include/bout/solver.hxx:42,
                 from adams_bashforth.hxx:31,
                 from adams_bashforth.cxx:1:
../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from ../../../../include/boutexception.hxx:7,
                 from ../../../../include/bout/solver.hxx:40:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  karniadakis.cxx
In file included from ../../../../include/utils.hxx:38,
                 from ../../../../include/options.hxx:45,
                 from ../../../../include/bout/solver.hxx:42,
                 from karniadakis.hxx:41,
                 from karniadakis.cxx:39:
../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from ../../../../include/boutexception.hxx:7,
                 from ../../../../include/bout/solver.hxx:40:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  rk4.cxx
In file included from ../../../../include/utils.hxx:38,
                 from ../../../../include/options.hxx:45,
                 from ../../../../include/bout/solver.hxx:42,
                 from rk4.hxx:36,
                 from rk4.cxx:2:
../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from ../../../../include/boutexception.hxx:7,
                 from ../../../../include/bout/solver.hxx:40:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  euler.cxx
In file included from ../../../../include/utils.hxx:38,
                 from ../../../../include/options.hxx:45,
                 from ../../../../include/bout/solver.hxx:42,
                 from euler.hxx:36,
                 from euler.cxx:2:
../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from ../../../../include/boutexception.hxx:7,
                 from ../../../../include/bout/solver.hxx:40:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  rk3-ssp.cxx
In file included from ../../../../include/utils.hxx:38,
                 from ../../../../include/options.hxx:45,
                 from ../../../../include/bout/solver.hxx:42,
                 from rk3-ssp.hxx:42,
                 from rk3-ssp.cxx:2:
../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from ../../../../include/boutexception.hxx:7,
                 from ../../../../include/bout/solver.hxx:40:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  rkf45.cxx
In file included from ../../../../../../include/utils.hxx:38,
                 from ../../../../../../include/options.hxx:45,
                 from ../../../../../../include/bout/rkscheme.hxx:39,
                 from rkf45.hxx:7,
                 from rkf45.cxx:1:
../../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/stdexcept:38,
                 from /usr/include/c++/13/system_error:43,
                 from /usr/include/c++/13/bits/ios_base.h:46,
                 from /usr/include/c++/13/streambuf:43,
                 from ../../../../../../include/multiostream.hxx:4,
                 from ../../../../../../include/output.hxx:32,
                 from ../../../../../../include/options.hxx:44:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  parallel_boundary_region.cxx
  Compiling  parallel_boundary_op.cxx
  Compiling  cashkarp.cxx
In file included from ../../include/bout/scorepwrapper.hxx:5,
                 from ../../include/bout/deriv_store.hxx:37,
                 from ../../include/bout/mesh.hxx:49,
                 from parallel_boundary_op.cxx:2:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from ../../include/msg_stack.hxx:35:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
In file included from ../../../../../../include/utils.hxx:38,
                 from ../../../../../../include/options.hxx:45,
                 from ../../../../../../include/bout/rkscheme.hxx:39,
                 from cashkarp.hxx:7,
                 from cashkarp.cxx:1:
../../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/stdexcept:38,
                 from /usr/include/c++/13/system_error:43,
                 from /usr/include/c++/13/bits/ios_base.h:46,
                 from /usr/include/c++/13/streambuf:43,
                 from ../../../../../../include/multiostream.hxx:4,
                 from ../../../../../../include/output.hxx:32,
                 from ../../../../../../include/options.hxx:44:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  fv_ops.cxx
In file included from ../../include/bout/../field.hxx:41,
                 from ../../include/bout/../field3d.hxx:30,
                 from ../../include/bout/fv_ops.hxx:9,
                 from fv_ops.cxx:2:
../../include/bout/../msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/bout/../msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../include/bout/../dataformat.hxx:40,
                 from ../../include/bout/../datafile.hxx:20,
                 from ../../include/bout/../globals.hxx:30,
                 from ../../include/bout/fv_ops.hxx:8:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  rk4simple.cxx
In file included from ../../../../../../include/utils.hxx:38,
                 from ../../../../../../include/options.hxx:45,
                 from ../../../../../../include/bout/rkscheme.hxx:39,
                 from rk4simple.hxx:7,
                 from rk4simple.cxx:1:
../../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/stdexcept:38,
                 from /usr/include/c++/13/system_error:43,
                 from /usr/include/c++/13/bits/ios_base.h:46,
                 from /usr/include/c++/13/streambuf:43,
                 from ../../../../../../include/multiostream.hxx:4,
                 from ../../../../../../include/output.hxx:32,
                 from ../../../../../../include/options.hxx:44:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
fv_ops.cxx: In function 'FV::communicateFluxes(Field3D&)':
fv_ops.cxx:436:17: warning: 'xout' may be used uninitialized [-Wmaybe-uninitialized]
  436 |       mesh->wait(xout);
      |       ~~~~~~~~~~^~~~~~
fv_ops.cxx:408:22: note: 'xout' was declared here
  408 |     comm_handle xin, xout;
      |                      ^~~~
  Compiling  solver.cxx
In file included from ../../include/utils.hxx:38,
                 from ../../include/options.hxx:45,
                 from ../../include/bout/solver.hxx:42,
                 from solver.cxx:23:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from ../../include/boutexception.hxx:7,
                 from ../../include/bout/solver.hxx:40:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  rkf34.cxx
In file included from ../../../../../../include/utils.hxx:38,
                 from ../../../../../../include/options.hxx:45,
                 from ../../../../../../include/bout/rkscheme.hxx:39,
                 from rkf34.hxx:7,
                 from rkf34.cxx:1:
../../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/stdexcept:38,
                 from /usr/include/c++/13/system_error:43,
                 from /usr/include/c++/13/bits/ios_base.h:46,
                 from /usr/include/c++/13/streambuf:43,
                 from ../../../../../../include/multiostream.hxx:4,
                 from ../../../../../../include/output.hxx:32,
                 from ../../../../../../include/options.hxx:44:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  rkgeneric.cxx
In file included from ../../../../include/utils.hxx:38,
                 from ../../../../include/options.hxx:45,
                 from ../../../../include/bout/solver.hxx:42,
                 from rkgeneric.hxx:34,
                 from rkgeneric.cxx:2:
../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from ../../../../include/boutexception.hxx:7,
                 from ../../../../include/bout/solver.hxx:40:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  solverfactory.cxx
In file included from impls/pvode/pvode.hxx:37,
                 from solverfactory.cxx:12:
../../include/pvode/nvector.h:93: warning: "PVEC_REAL_MPI_TYPE" redefined
   93 | #define PVEC_REAL_MPI_TYPE MPI_DOUBLE
      | 
In file included from /usr/include/mpich-x86_64/nvector/nvector_parallel.h:44,
                 from impls/arkode/arkode.hxx:47,
                 from solverfactory.cxx:4:
/usr/include/mpich-x86_64/sundials/sundials_mpi_types.h:38: note: this is the location of the previous definition
   38 | #define PVEC_REAL_MPI_TYPE    MPI_SUNREALTYPE
      | 
In file included from ../../include/utils.hxx:38,
                 from ../../include/options.hxx:45,
                 from ../../include/bout/solver.hxx:42,
                 from ../../include/bout/solverfactory.hxx:8,
                 from solverfactory.cxx:1:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from ../../include/boutexception.hxx:7,
                 from ../../include/bout/generic_factory.hxx:7,
                 from ../../include/bout/solverfactory.hxx:7:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  rkscheme.cxx
In file included from ../../../../include/utils.hxx:38,
                 from ../../../../include/options.hxx:45,
                 from ../../../../include/bout/rkscheme.hxx:39,
                 from rkschemefactory.hxx:7,
                 from rkscheme.cxx:1:
../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/stdexcept:38,
                 from /usr/include/c++/13/system_error:43,
                 from /usr/include/c++/13/bits/ios_base.h:46,
                 from /usr/include/c++/13/streambuf:43,
                 from ../../../../include/multiostream.hxx:4,
                 from ../../../../include/output.hxx:32,
                 from ../../../../include/options.hxx:44:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  rkschemefactory.cxx
In file included from ../../../../include/utils.hxx:38,
                 from ../../../../include/options.hxx:45,
                 from ../../../../include/bout/rkscheme.hxx:39,
                 from rkschemefactory.hxx:7,
                 from rkschemefactory.cxx:1:
../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/stdexcept:38,
                 from /usr/include/c++/13/system_error:43,
                 from /usr/include/c++/13/bits/ios_base.h:46,
                 from /usr/include/c++/13/streambuf:43,
                 from ../../../../include/multiostream.hxx:4,
                 from ../../../../include/output.hxx:32,
                 from ../../../../include/options.hxx:44:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  options_ini.cxx
In file included from ../../../include/utils.hxx:38,
                 from options_ini.cxx:52:
../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ios:41,
                 from /usr/include/c++/13/istream:40,
                 from /usr/include/c++/13/sstream:40,
                 from /usr/include/c++/13/complex:45,
                 from ../../../include/dcomplex.hxx:35,
                 from ../../../include/utils.hxx:33:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  split-rk.cxx
In file included from ../../../../include/utils.hxx:38,
                 from ../../../../include/options.hxx:45,
                 from ../../../../include/bout/solver.hxx:42,
                 from split-rk.hxx:36,
                 from split-rk.cxx:1:
../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from ../../../../include/boutexception.hxx:7,
                 from ../../../../include/bout/solver.hxx:40:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  options_netcdf.cxx
In file included from ../../../include/utils.hxx:38,
                 from ../../../include/options.hxx:45,
                 from ../../../include/options_netcdf.hxx:44,
                 from options_netcdf.cxx:4:
../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/stdexcept:38,
                 from /usr/include/c++/13/system_error:43,
                 from /usr/include/c++/13/bits/ios_base.h:46,
                 from /usr/include/c++/13/streambuf:43,
                 from ../../../include/multiostream.hxx:4,
                 from ../../../include/output.hxx:32,
                 from ../../../include/options.hxx:44:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
In file included from /usr/include/mpich-x86_64/ncFile.h:2,
                 from /usr/include/mpich-x86_64/netcdf:16,
                 from options_netcdf.cxx:7:
/usr/include/mpich-x86_64/ncGroup.h: At global scope:
/usr/include/mpich-x86_64/ncGroup.h:18:14: warning: 'netCDF::file_id' defined but not used [-Wunused-variable]
   18 |   static int file_id;
      |              ^~~~~~~
  Compiling  bout++.cxx
In file included from ../include/field.hxx:41,
                 from ../include/field2d.hxx:34,
                 from ../include/boundary_op.hxx:9,
                 from ../include/boundary_factory.hxx:7,
                 from bout++.cxx:41:
../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../include/field.hxx:34:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  bout_types.cxx
In file included from bout_types.cxx:4:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from ../../include/boutexception.hxx:7,
                 from bout_types.cxx:2:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  boutexception.cxx
In file included from boutexception.cxx:5:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from ../../include/boutexception.hxx:7,
                 from boutexception.cxx:3:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  derivs.cxx
  Compiling  msg_stack.cxx
In file included from msg_stack.cxx:28:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from ../../include/msg_stack.hxx:35:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
In file included from ../../include/field.hxx:41,
                 from ../../include/field2d.hxx:34,
                 from ../../include/derivs.hxx:32,
                 from derivs.cxx:42:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../include/dataformat.hxx:40,
                 from ../../include/datafile.hxx:20,
                 from ../../include/globals.hxx:30,
                 from derivs.cxx:41:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  options.cxx
In file included from ../../include/bout/scorepwrapper.hxx:5,
                 from ../../include/bout/deriv_store.hxx:37,
                 from ../../include/bout/mesh.hxx:49,
                 from ../../include/field_factory.hxx:32,
                 from options.cxx:2:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from ../../include/boutexception.hxx:7,
                 from options.cxx:1:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  output.cxx
In file included from ../../include/utils.hxx:38,
                 from output.cxx:30:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/stdexcept:38,
                 from /usr/include/c++/13/system_error:43,
                 from /usr/include/c++/13/bits/ios_base.h:46,
                 from /usr/include/c++/13/streambuf:43,
                 from ../../include/multiostream.hxx:4,
                 from ../../include/output.hxx:32,
                 from output.cxx:29:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  utils.cxx
  Compiling  optionsreader.cxx
In file included from ../../include/utils.hxx:38,
                 from utils.cxx:26:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ios:41,
                 from /usr/include/c++/13/istream:40,
                 from /usr/include/c++/13/sstream:40,
                 from /usr/include/c++/13/complex:45,
                 from ../../include/dcomplex.hxx:35,
                 from ../../include/utils.hxx:33:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
In file included from ../../include/utils.hxx:38,
                 from ../../include/options.hxx:45,
                 from ../../include/optionsreader.hxx:37,
                 from optionsreader.cxx:1:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/stdexcept:38,
                 from /usr/include/c++/13/system_error:43,
                 from /usr/include/c++/13/bits/ios_base.h:46,
                 from /usr/include/c++/13/streambuf:43,
                 from ../../include/multiostream.hxx:4,
                 from ../../include/output.hxx:32,
                 from ../../include/options.hxx:44:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  boutcomm.cxx
  Compiling  timer.cxx
In file included from ../../include/bout/sys/timer.hxx:11,
                 from timer.cxx:1:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/stdexcept:38,
                 from /usr/include/c++/13/system_error:43,
                 from /usr/include/c++/13/bits/ios_base.h:46,
                 from /usr/include/c++/13/iomanip:42,
                 from ../../include/bout/sys/timer.hxx:8:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  range.cxx
  Compiling  petsclib.cxx
  Compiling  expressionparser.cxx
In file included from ../../include/utils.hxx:38,
                 from ../../include/options.hxx:45,
                 from petsclib.cxx:5:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/stdexcept:38,
                 from /usr/include/c++/13/system_error:43,
                 from /usr/include/c++/13/bits/ios_base.h:46,
                 from /usr/include/c++/13/streambuf:43,
                 from ../../include/multiostream.hxx:4,
                 from ../../include/output.hxx:32,
                 from ../../include/options.hxx:44:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
In file included from ../../include/utils.hxx:38,
                 from expressionparser.cxx:28:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from ../../include/bout/sys/expressionparser.hxx:33,
                 from expressionparser.cxx:25:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  slepclib.cxx
  Compiling  type_name.cxx
In file included from ../../include/field.hxx:41,
                 from ../../include/field2d.hxx:34,
                 from type_name.cxx:3:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../include/field.hxx:34:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  bout++-time.cxx
Creating libbout++.so
invert/laplace/impls/spt/spt.cxx: In member function '__ct_base ':
invert/laplace/impls/spt/spt.cxx:63:37: warning: argument 1 value '18446744073709551615' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
   63 |   alldata = new SPT_data[ye - ys + 1];
      |                                     ^
/usr/include/c++/13/new:128:26: note: in a call to allocation function 'operator new []' declared here
  128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
invert/laplace/impls/pdd/pdd.cxx: In member function 'solve':
invert/laplace/impls/pdd/pdd.cxx:83:38: warning: argument 1 value '18446744073709551615' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
   83 |       data = new PDD_data[ye - ys + 1];
      |                                      ^
/usr/include/c++/13/new:128:26: note: in a call to allocation function 'operator new []' declared here
  128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
Creating libbout++.so
src/invert/laplace/impls/spt/spt.cxx: In member function '__ct_base ':
src/invert/laplace/impls/spt/spt.cxx:63:37: warning: argument 1 value '18446744073709551615' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
   63 |   alldata = new SPT_data[ye - ys + 1];
      |                                     ^
/usr/include/c++/13/new:128:26: note: in a call to allocation function 'operator new []' declared here
  128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
src/invert/laplace/impls/pdd/pdd.cxx: In member function 'solve':
src/invert/laplace/impls/pdd/pdd.cxx:83:38: warning: argument 1 value '18446744073709551615' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
   83 |       data = new PDD_data[ye - ys + 1];
      |                                      ^
/usr/include/c++/13/new:128:26: note: in a call to allocation function 'operator new []' declared here
  128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
+ ls -l lib
total 75252
lrwxrwxrwx. 1 mockbuild mock       18 Jan 20 23:01 libbout++.so -> libbout++.so.4.4.0
-rwxr-xr-x. 1 mockbuild mock 75531312 Jan 20 23:01 libbout++.so.4.4.0
-rw-r--r--. 1 mockbuild mock   974490 Jan 20 22:56 libpvode.a
lrwxrwxrwx. 1 mockbuild mock       17 Jan 20 23:01 libpvode.so -> libpvode.so.1.0.0
-rwxr-xr-x. 1 mockbuild mock   254888 Jan 20 23:01 libpvode.so.1.0.0
-rw-r--r--. 1 mockbuild mock   215442 Jan 20 22:56 libpvpre.a
lrwxrwxrwx. 1 mockbuild mock       17 Jan 20 23:01 libpvpre.so -> libpvpre.so.1.0.0
-rwxr-xr-x. 1 mockbuild mock    71824 Jan 20 23:01 libpvpre.so.1.0.0
+ make -j2 python
make -C tools/pylib python3
make[1]: Entering directory '/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tools/pylib'
PY=python3 make -C _boutcore_build pseudoinstall
make[2]: Entering directory '/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tools/pylib/_boutcore_build'
  Generating boutcore.pyx
  Generating setup.py
  Generating helper.cxx
  Generating helper.h
  Generating resolve_enum.pxd
resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied
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resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied
  Generating boutcpp.pxd
warning: resolve_enum.pxd:49:25: 'deflt' redeclared 
warning: resolve_enum.pxd:189:28: 'Standard' redeclared 
warning: resolve_enum.pxd:223:19: 'Standard' redeclared 
Compiling boutcore.pyx because it changed.
[1/1] Cythonizing boutcore.pyx
running build_ext
building 'boutcore' extension
creating build
creating build/temp.linux-x86_64-cpython-311
mpic++ -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include -I/usr/include -I/usr/include -I/usr/include/mpich-x86_64/petsc -I. -I/usr/include/python3.11 -c boutcore.cpp -o build/temp.linux-x86_64-cpython-311/boutcore.o -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DHAS_PRETTY_FUNCTION -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -DSIGHANDLE -DLOGCOLOR -DBOUT_VERSION_STRING=4.4.2 -DBOUT_VERSION_DOUBLE=4.42 -DBACKTRACE -fPIC -DBOUT_HAS_FFTW -DNCDF4 -DHDF5 -DBOUT_HAS_PETSC -DBOUT_HAS_IDA -DBOUT_HAS_CVODE -DBOUT_HAS_ARKODE -DBOUT_HAS_PVODE -DBOUT_HAS_GETTEXT -DBOUT_LOCALE_PATH=/usr/share/locale -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DHAS_PRETTY_FUNCTION -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -DSIGHANDLE -DLOGCOLOR -DBOUT_VERSION_STRING=4.4.2 -DBOUT_VERSION_DOUBLE=4.42 -DBACKTRACE -fPIC -DBOUT_HAS_FFTW -DNCDF4 -DHDF5 -DBOUT_HAS_PETSC -DBOUT_HAS_IDA -DBOUT_HAS_CVODE -DBOUT_HAS_ARKODE -DBOUT_HAS_PVODE -DBOUT_HAS_GETTEXT -DBOUT_LOCALE_PATH=/usr/share/locale -DBOUT_FLAGS_STRING=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DHAS_PRETTY_FUNCTION -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -DSIGHANDLE -DLOGCOLOR -DBOUT_VERSION_STRING=4.4.2 -DBOUT_VERSION_DOUBLE=4.42 -DBACKTRACE -fPIC -DBOUT_HAS_FFTW -DNCDF4 -DHDF5 -DBOUT_HAS_PETSC -DBOUT_HAS_IDA -DBOUT_HAS_CVODE -DBOUT_HAS_ARKODE -DBOUT_HAS_PVODE -DBOUT_HAS_GETTEXT -DBOUT_LOCALE_PATH=/usr/share/locale -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DHAS_PRETTY_FUNCTION -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -DSIGHANDLE -DLOGCOLOR -DBOUT_VERSION_STRING=4.4.2 -DBOUT_VERSION_DOUBLE=4.42 -DBACKTRACE -fPIC -DBOUT_HAS_FFTW -DNCDF4 -DHDF5 -DBOUT_HAS_PETSC -DBOUT_HAS_IDA -DBOUT_HAS_CVODE -DBOUT_HAS_ARKODE -DBOUT_HAS_PVODE -DBOUT_HAS_GETTEXT -DBOUT_LOCALE_PATH=/usr/share/locale
In file included from /usr/lib64/python3.11/site-packages/numpy/core/include/numpy/ndarraytypes.h:1948,
                 from /usr/lib64/python3.11/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
                 from /usr/lib64/python3.11/site-packages/numpy/core/include/numpy/arrayobject.h:5,
                 from boutcore.cpp:1050:
/usr/lib64/python3.11/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
   17 | #warning "Using deprecated NumPy API, disable it with " \
      |  ^~~~~~~
In file included from /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/field.hxx:41,
                 from /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/field3d.hxx:30,
                 from boutcore.cpp:1030:
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/msg_stack.hxx: In destructor ‘MsgStackItem::~MsgStackItem()’:
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/msg_stack.hxx:147:33: warning: ‘bool std::uncaught_exception()’ is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ios:41,
                 from boutcore.cpp:1024:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
boutcore.cpp: In function ‘int __Pyx_CLineForTraceback(PyThreadState*, int)’:
boutcore.cpp:66629:69: warning: unused parameter ‘tstate’ [-Wunused-parameter]
66629 | static int __Pyx_CLineForTraceback(CYTHON_NCP_UNUSED PyThreadState *tstate, int c_line) {
      |                                                      ~~~~~~~~~~~~~~~^~~~~~
boutcore.cpp: At global scope:
boutcore.cpp:25815:45: warning: ‘__pyx_obj_8boutcore_Vector2D* __pyx_f_8boutcore_v2dFromObj(Vector2D)’ defined but not used [-Wunused-function]
25815 | static struct __pyx_obj_8boutcore_Vector2D *__pyx_f_8boutcore_v2dFromObj(Vector2D __pyx_v_i) {
      |                                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
boutcore.cpp: In function ‘__pyx_f_12resolve_enum_resolve_cell_loc(_object*)’:
boutcore.cpp:50750:10: warning: ‘__pyx_r’ may be used uninitialized [-Wmaybe-uninitialized]
50750 |   return __pyx_r;
      |          ^~~~~~~
boutcore.cpp:50393:12: note: ‘__pyx_r’ was declared here
50393 |   CELL_LOC __pyx_r;
      |            ^~~~~~~
In function ‘__pyx_pf_8boutcore_44bracket(_object*, __pyx_obj_8boutcore_Field3D*, __pyx_obj_8boutcore_Field3D*, _object*, _object*)’,
    inlined from ‘__pyx_pw_8boutcore_45bracket(_object*, _object*, _object*)’ at boutcore.cpp:43784:41:
boutcore.cpp:43860:64: warning: ‘__pyx_r’ may be used uninitialized [-Wmaybe-uninitialized]
43860 |   __pyx_t_1 = ((PyObject *)__pyx_f_8boutcore_f3dFromObj(bracket((__pyx_v_a->cobj[0]), (__pyx_v_b->cobj[0]), __pyx_v_method_, __pyx_v_outloc_))); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 2642, __pyx_L1_error)
      |                                                         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
boutcore.cpp: In function ‘__pyx_pw_8boutcore_45bracket(_object*, _object*, _object*)’:
boutcore.cpp:52261:18: note: ‘__pyx_r’ was declared here
52261 |   BRACKET_METHOD __pyx_r;
      |                  ^~~~~~~
mpic++ -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include -I/usr/include -I/usr/include -I/usr/include/mpich-x86_64/petsc -I. -I/usr/include/python3.11 -c boutexception_helper.cxx -o build/temp.linux-x86_64-cpython-311/boutexception_helper.o -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DHAS_PRETTY_FUNCTION -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -DSIGHANDLE -DLOGCOLOR -DBOUT_VERSION_STRING=4.4.2 -DBOUT_VERSION_DOUBLE=4.42 -DBACKTRACE -fPIC -DBOUT_HAS_FFTW -DNCDF4 -DHDF5 -DBOUT_HAS_PETSC -DBOUT_HAS_IDA -DBOUT_HAS_CVODE -DBOUT_HAS_ARKODE -DBOUT_HAS_PVODE -DBOUT_HAS_GETTEXT -DBOUT_LOCALE_PATH=/usr/share/locale -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DHAS_PRETTY_FUNCTION -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -DSIGHANDLE -DLOGCOLOR -DBOUT_VERSION_STRING=4.4.2 -DBOUT_VERSION_DOUBLE=4.42 -DBACKTRACE -fPIC -DBOUT_HAS_FFTW -DNCDF4 -DHDF5 -DBOUT_HAS_PETSC -DBOUT_HAS_IDA -DBOUT_HAS_CVODE -DBOUT_HAS_ARKODE -DBOUT_HAS_PVODE -DBOUT_HAS_GETTEXT -DBOUT_LOCALE_PATH=/usr/share/locale -DBOUT_FLAGS_STRING=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DHAS_PRETTY_FUNCTION -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -DSIGHANDLE -DLOGCOLOR -DBOUT_VERSION_STRING=4.4.2 -DBOUT_VERSION_DOUBLE=4.42 -DBACKTRACE -fPIC -DBOUT_HAS_FFTW -DNCDF4 -DHDF5 -DBOUT_HAS_PETSC -DBOUT_HAS_IDA -DBOUT_HAS_CVODE -DBOUT_HAS_ARKODE -DBOUT_HAS_PVODE -DBOUT_HAS_GETTEXT -DBOUT_LOCALE_PATH=/usr/share/locale -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DHAS_PRETTY_FUNCTION -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -DSIGHANDLE -DLOGCOLOR -DBOUT_VERSION_STRING=4.4.2 -DBOUT_VERSION_DOUBLE=4.42 -DBACKTRACE -fPIC -DBOUT_HAS_FFTW -DNCDF4 -DHDF5 -DBOUT_HAS_PETSC -DBOUT_HAS_IDA -DBOUT_HAS_CVODE -DBOUT_HAS_ARKODE -DBOUT_HAS_PVODE -DBOUT_HAS_GETTEXT -DBOUT_LOCALE_PATH=/usr/share/locale
mpic++ -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include -I/usr/include -I/usr/include -I/usr/include/mpich-x86_64/petsc -I. -I/usr/include/python3.11 -c helper.cxx -o build/temp.linux-x86_64-cpython-311/helper.o -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DHAS_PRETTY_FUNCTION -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -DSIGHANDLE -DLOGCOLOR -DBOUT_VERSION_STRING=4.4.2 -DBOUT_VERSION_DOUBLE=4.42 -DBACKTRACE -fPIC -DBOUT_HAS_FFTW -DNCDF4 -DHDF5 -DBOUT_HAS_PETSC -DBOUT_HAS_IDA -DBOUT_HAS_CVODE -DBOUT_HAS_ARKODE -DBOUT_HAS_PVODE -DBOUT_HAS_GETTEXT -DBOUT_LOCALE_PATH=/usr/share/locale -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DHAS_PRETTY_FUNCTION -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -DSIGHANDLE -DLOGCOLOR -DBOUT_VERSION_STRING=4.4.2 -DBOUT_VERSION_DOUBLE=4.42 -DBACKTRACE -fPIC -DBOUT_HAS_FFTW -DNCDF4 -DHDF5 -DBOUT_HAS_PETSC -DBOUT_HAS_IDA -DBOUT_HAS_CVODE -DBOUT_HAS_ARKODE -DBOUT_HAS_PVODE -DBOUT_HAS_GETTEXT -DBOUT_LOCALE_PATH=/usr/share/locale -DBOUT_FLAGS_STRING=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DHAS_PRETTY_FUNCTION -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -DSIGHANDLE -DLOGCOLOR -DBOUT_VERSION_STRING=4.4.2 -DBOUT_VERSION_DOUBLE=4.42 -DBACKTRACE -fPIC -DBOUT_HAS_FFTW -DNCDF4 -DHDF5 -DBOUT_HAS_PETSC -DBOUT_HAS_IDA -DBOUT_HAS_CVODE -DBOUT_HAS_ARKODE -DBOUT_HAS_PVODE -DBOUT_HAS_GETTEXT -DBOUT_LOCALE_PATH=/usr/share/locale -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DHAS_PRETTY_FUNCTION -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -DSIGHANDLE -DLOGCOLOR -DBOUT_VERSION_STRING=4.4.2 -DBOUT_VERSION_DOUBLE=4.42 -DBACKTRACE -fPIC -DBOUT_HAS_FFTW -DNCDF4 -DHDF5 -DBOUT_HAS_PETSC -DBOUT_HAS_IDA -DBOUT_HAS_CVODE -DBOUT_HAS_ARKODE -DBOUT_HAS_PVODE -DBOUT_HAS_GETTEXT -DBOUT_LOCALE_PATH=/usr/share/locale
In file included from /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/field.hxx:41,
                 from /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/field3d.hxx:30,
                 from helper.cxx:1:
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/msg_stack.hxx: In destructor ‘MsgStackItem::~MsgStackItem()’:
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/msg_stack.hxx:147:33: warning: ‘bool std::uncaught_exception()’ is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/field.hxx:34:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
creating build/lib.linux-x86_64-cpython-311
mpic++ -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-x86_64-cpython-311/boutcore.o build/temp.linux-x86_64-cpython-311/boutexception_helper.o build/temp.linux-x86_64-cpython-311/helper.o -L/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/lib -L/usr/lib64 -L/usr/lib64 -L/usr/lib64/mpich/lib -L/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/lib -L/usr/lib64 -lm -lbout++ -lm -lfftw3 -lnetcdf_c++4 -lnetcdf -lhdf5_hl -lhdf5 -lhdf5_hl -lsz -lz -ldl -lm -lpetsc -lhdf5 -lsundials_ida -lsundials_nvecparallel -lsundials_cvode -lsundials_nvecparallel -lsundials_arkode -lsundials_nvecparallel -lpvode -lpvpre -o build/lib.linux-x86_64-cpython-311/boutcore.cpython-311-x86_64-linux-gnu.so -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes
copying build/lib.linux-x86_64-cpython-311/boutcore.cpython-311-x86_64-linux-gnu.so -> 
cp boutcore*.so ..
make[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tools/pylib/_boutcore_build'
make[1]: Leaving directory '/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tools/pylib'
++ pwd
+ export LD_LIBRARY_PATH=/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/lib
+ LD_LIBRARY_PATH=/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/lib
+ make -j2 -C manual html
make: Entering directory '/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual'
cd doxygen && doxygen Doxyfile
warning: Tag 'TCL_SUBST' at line 247 of file 'Doxyfile' has become obsolete.
         To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
warning: Tag 'COLS_IN_ALPHA_INDEX' at line 1056 of file 'Doxyfile' has become obsolete.
         To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
warning: Tag 'FORMULA_TRANSPARENT' at line 1473 of file 'Doxyfile' has become obsolete.
         To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
warning: Tag 'LATEX_SOURCE_CODE' at line 1761 of file 'Doxyfile' has become obsolete.
         To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
warning: Tag 'RTF_SOURCE_CODE' at line 1843 of file 'Doxyfile' has become obsolete.
         To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
warning: Tag 'DOCBOOK_PROGRAMLISTING' at line 1941 of file 'Doxyfile' has become obsolete.
         To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
warning: Tag 'PERL_PATH' at line 2149 of file 'Doxyfile' has become obsolete.
         To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
warning: Tag 'CLASS_DIAGRAMS' at line 2162 of file 'Doxyfile' has become obsolete.
         To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
warning: Tag 'MSCGEN_PATH' at line 2171 of file 'Doxyfile' has become obsolete.
         To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
warning: Tag 'DOT_FONTNAME' at line 2213 of file 'Doxyfile' has become obsolete.
         To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
warning: Tag 'DOT_FONTSIZE' at line 2220 of file 'Doxyfile' has become obsolete.
         To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
warning: Tag 'DOT_TRANSPARENT' at line 2439 of file 'Doxyfile' has become obsolete.
         To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
warning: argument 'a4wide' for option PAPER_TYPE is not a valid enum value
Using the default: a4!
Doxygen version used: 1.9.6
Notice: Output directory 'bout' does not exist. I have created it for you.
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Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/rkscheme.hxx...
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Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/rvec.hxx...
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Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/scorepwrapper.hxx...
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Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/slepclib.hxx...
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Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/snb.hxx...
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Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/solver.hxx...
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Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/solverfactory.hxx...
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Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/surfaceiter.hxx...
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Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/sys/expressionparser.hxx...
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Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/sys/gettext.hxx...
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Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/sys/range.hxx...
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Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/sys/timer.hxx...
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Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/sys/uuid.h...
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Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/sys/variant.hxx...
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Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/template_combinations.hxx...
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Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/pvode/band.h...
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Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/pvode/cvdiag.h...
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Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/field/fieldgenerators.hxx...
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Reading /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/field/gen_fieldops.py...
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Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/field/vecops.cxx...
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Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/field/vector2d.cxx...
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Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/field/vector3d.cxx...
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Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx...
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Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.cxx...
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Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx...
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Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.cxx...
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Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx...
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Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/fft_fftw.cxx...
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Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/lapack_routines.cxx...
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Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/cyclic/cyclic_laplace.cxx...
Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/cyclic/cyclic_laplace.cxx...
Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/cyclic/cyclic_laplace.hxx...
Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/cyclic/cyclic_laplace.hxx...
Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/multigrid/multigrid_alg.cxx...
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Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/multigrid/multigrid_laplace.cxx...
Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/multigrid/multigrid_laplace.cxx...
Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/multigrid/multigrid_laplace.hxx...
Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/multigrid/multigrid_laplace.hxx...
Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/multigrid/multigrid_solver.cxx...
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Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/mumps/mumps_laplace.cxx...
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Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/mumps/mumps_laplace.hxx...
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Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/naulin/naulin_laplace.cxx...
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Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/naulin/naulin_laplace.hxx...
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Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/pdd/pdd.cxx...
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Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/petsc/petsc_laplace.cxx...
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Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/petsc/petsc_laplace.hxx...
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Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/serial_band/serial_band.cxx...
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Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/shoot/shoot_laplace.hxx...
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Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/invert_laplace.cxx...
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Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/laplacefactory.cxx...
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Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/laplacefactory.hxx...
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Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplacexy/laplacexy.cxx...
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Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplacexz/impls/cyclic/laplacexz-cyclic.cxx...
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Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplacexz/impls/cyclic/laplacexz-cyclic.hxx...
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Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplacexz/impls/petsc/laplacexz-petsc.cxx...
Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplacexz/impls/petsc/laplacexz-petsc.cxx...
Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplacexz/impls/petsc/laplacexz-petsc.hxx...
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Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplacexz/laplacexz.cxx...
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Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/parderiv/impls/cyclic/cyclic.cxx...
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Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/parderiv/impls/cyclic/cyclic.hxx...
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Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/parderiv/parderiv_factory.cxx...
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Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/boundary_factory.cxx...
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Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/boundary_region.cxx...
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Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/boundary_standard.cxx...
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Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/coordinates.cxx...
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Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/data/gridfromfile.cxx...
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Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/data/gridfromoptions.cxx...
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Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/difops.cxx...
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Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/fv_ops.cxx...
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Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/impls/bout/boutmesh.cxx...
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Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/index_derivs.cxx...
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Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/interpolation.cxx...
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Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/interpolation/bilinear.cxx...
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Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/interpolation/interpolation_factory.cxx...
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Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/interpolation/lagrange_4pt.cxx...
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Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/interpolation/monotonic_hermite_spline.cxx...
Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/interpolation/monotonic_hermite_spline.cxx...
Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/mesh.cxx...
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Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/meshfactory.cxx...
Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/meshfactory.cxx...
Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/meshfactory.hxx...
Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/meshfactory.hxx...
Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/parallel/fci.cxx...
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Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/parallel/fci.hxx...
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Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/parallel/identity.cxx...
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Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/parallel/shiftedmetric.cxx...
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Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/parallel_boundary_op.cxx...
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Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/parallel_boundary_region.cxx...
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Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/surfaceiter.cxx...
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Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/physics/gyro_average.cxx...
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Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/physics/physicsmodel.cxx...
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Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/physics/smoothing.cxx...
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Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/physics/snb.cxx...
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Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/physics/sourcex.cxx...
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Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/adams_bashforth/adams_bashforth.cxx...
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Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/imex-bdf2/imex-bdf2.cxx...
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Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/karniadakis/karniadakis.cxx...
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Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/petsc/petsc.cxx...
Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/petsc/petsc.hxx...
Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/petsc/petsc.hxx...
Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/power/power.cxx...
Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/power/power.cxx...
Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/power/power.hxx...
Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/power/power.hxx...
Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/pvode/pvode.cxx...
Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/pvode/pvode.cxx...
Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/pvode/pvode.hxx...
Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/pvode/pvode.hxx...
Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rk3-ssp/rk3-ssp.cxx...
Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rk3-ssp/rk3-ssp.cxx...
Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rk3-ssp/rk3-ssp.hxx...
Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rk3-ssp/rk3-ssp.hxx...
Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rk4/rk4.cxx...
Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rk4/rk4.cxx...
Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rk4/rk4.hxx...
Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rk4/rk4.hxx...
Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/impls/cashkarp/cashkarp.cxx...
Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/impls/cashkarp/cashkarp.cxx...
Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/impls/cashkarp/cashkarp.hxx...
Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/impls/cashkarp/cashkarp.hxx...
Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/impls/rk4simple/rk4simple.cxx...
Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/impls/rk4simple/rk4simple.cxx...
Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/impls/rk4simple/rk4simple.hxx...
Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/impls/rk4simple/rk4simple.hxx...
Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/impls/rkf34/rkf34.cxx...
Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/impls/rkf34/rkf34.cxx...
Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/impls/rkf34/rkf34.hxx...
Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/impls/rkf34/rkf34.hxx...
Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/impls/rkf45/rkf45.cxx...
Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/impls/rkf45/rkf45.cxx...
Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/impls/rkf45/rkf45.hxx...
Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/impls/rkf45/rkf45.hxx...
Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/rkgeneric.cxx...
Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/rkgeneric.cxx...
Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/rkgeneric.hxx...
Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/rkgeneric.hxx...
Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/rkscheme.cxx...
Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/rkscheme.cxx...
Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/rkschemefactory.cxx...
Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/rkschemefactory.cxx...
Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/rkschemefactory.hxx...
Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/rkschemefactory.hxx...
Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/slepc/slepc.cxx...
Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/slepc/slepc.cxx...
Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/slepc/slepc.hxx...
Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/slepc/slepc.hxx...
Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/snes/snes.cxx...
Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/snes/snes.cxx...
Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/snes/snes.hxx...
Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/snes/snes.hxx...
Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/split-rk/split-rk.cxx...
Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/split-rk/split-rk.cxx...
Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/split-rk/split-rk.hxx...
Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/split-rk/split-rk.hxx...
Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/solver.cxx...
Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/solver.cxx...
Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/solverfactory.cxx...
Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/solverfactory.cxx...
Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/bout_types.cxx...
Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/bout_types.cxx...
Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/boutcomm.cxx...
Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/sr/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/generic_factory.hxx:1: warning: the name 'Base' supplied as the argument in the \file statement is not an input file
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.cxx:347: warning: no uniquely matching class member found for 
  const vector< int > NcFormat::getSize(const string &var)
Possible candidates:
  'virtual const std::vector< int > DataFormat::getSize(const char *var)=0' at line 70 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'virtual const std::vector< int > DataFormat::getSize(const std::string &var)=0' at line 71 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'const std::vector< int > EmptyFormat::getSize(const char *var)' at line 46 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx
  'const std::vector< int > EmptyFormat::getSize(const std::string &var)' at line 47 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx
  'const std::vector< int > H5Format::getSize(const char *var) override' at line 76 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'const std::vector< int > H5Format::getSize(const std::string &var) override' at line 77 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'const std::vector< int > NcFormat::getSize(const char *var) override' at line 77 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'const std::vector< int > NcFormat::getSize(const std::string &var) override' at line 78 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'const std::vector< int > Ncxx4::getSize(const char *var) override' at line 78 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'const std::vector< int > Ncxx4::getSize(const std::string &var) override' at line 79 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'const vector< int > PncFormat::getSize(const char *var) override' at line 75 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'const vector< int > PncFormat::getSize(const std::string &var) override' at line 76 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.cxx:659: warning: no uniquely matching class member found for 
  bool NcFormat::read(int *var, const string &name, int lx, int ly, int lz)
Possible candidates:
  'bool Datafile::read()' at line 94 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/datafile.hxx
  'virtual bool DataFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 89 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'virtual bool DataFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 90 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'virtual bool DataFormat::read(char *var, const char *name, int n=1)=0' at line 91 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'virtual bool DataFormat::read(char *var, const std::string &name, int n=1)=0' at line 92 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'virtual bool DataFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 93 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'virtual bool DataFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 94 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'Options bout::experimental::OptionsNetCDF::read()' at line 60 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/options_netcdf.hxx
  'void OptionsReader::read(Options *options, const char *file,...)' at line 65 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/optionsreader.hxx
  'bool EmptyFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 52 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 54 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 56 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 58 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx
  'bool H5Format::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 95 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 96 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read(char *var, const char *name, int n=1) override' at line 97 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read(char *var, const std::string &name, int n=1) override' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read(void *var, hid_t hdf5_type, const char *name, int lx=1, int ly=0, int lz=0)' at line 161 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool NcFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::read(char *var, const char *name, int n=1) override' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::read(char *var, const std::string &name, int n=1) override' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool Ncxx4::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::read(char *var, const char *name, int n=1) override' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::read(char *var, const std::string &name, int n=1) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 105 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool PncFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 84 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 85 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 86 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 87 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'virtual void OptionParser::read(Options *options, const std::string &filename)=0' at line 56 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/options/optionparser.hxx
  'void OptionINI::read(Options *options, const std::string &filename) override' at line 51 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/options/options_ini.hxx
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.cxx:715: warning: no uniquely matching class member found for 
  bool NcFormat::read(char *var, const string &name, int n)
Possible candidates:
  'bool Datafile::read()' at line 94 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/datafile.hxx
  'virtual bool DataFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 89 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'virtual bool DataFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 90 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'virtual bool DataFormat::read(char *var, const char *name, int n=1)=0' at line 91 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'virtual bool DataFormat::read(char *var, const std::string &name, int n=1)=0' at line 92 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'virtual bool DataFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 93 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'virtual bool DataFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 94 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'Options bout::experimental::OptionsNetCDF::read()' at line 60 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/options_netcdf.hxx
  'void OptionsReader::read(Options *options, const char *file,...)' at line 65 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/optionsreader.hxx
  'bool EmptyFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 52 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 54 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 56 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 58 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx
  'bool H5Format::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 95 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 96 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read(char *var, const char *name, int n=1) override' at line 97 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read(char *var, const std::string &name, int n=1) override' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read(void *var, hid_t hdf5_type, const char *name, int lx=1, int ly=0, int lz=0)' at line 161 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool NcFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::read(char *var, const char *name, int n=1) override' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::read(char *var, const std::string &name, int n=1) override' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool Ncxx4::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::read(char *var, const char *name, int n=1) override' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::read(char *var, const std::string &name, int n=1) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 105 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool PncFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 84 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 85 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 86 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 87 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'virtual void OptionParser::read(Options *options, const std::string &filename)=0' at line 56 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/options/optionparser.hxx
  'void OptionINI::read(Options *options, const std::string &filename) override' at line 51 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/options/options_ini.hxx
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.cxx:756: warning: no uniquely matching class member found for 
  bool NcFormat::read(double *var, const string &name, int lx, int ly, int lz)
Possible candidates:
  'bool Datafile::read()' at line 94 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/datafile.hxx
  'virtual bool DataFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 89 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'virtual bool DataFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 90 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'virtual bool DataFormat::read(char *var, const char *name, int n=1)=0' at line 91 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'virtual bool DataFormat::read(char *var, const std::string &name, int n=1)=0' at line 92 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'virtual bool DataFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 93 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'virtual bool DataFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 94 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'Options bout::experimental::OptionsNetCDF::read()' at line 60 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/options_netcdf.hxx
  'void OptionsReader::read(Options *options, const char *file,...)' at line 65 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/optionsreader.hxx
  'bool EmptyFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 52 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 54 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 56 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 58 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx
  'bool H5Format::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 95 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 96 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read(char *var, const char *name, int n=1) override' at line 97 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read(char *var, const std::string &name, int n=1) override' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read(void *var, hid_t hdf5_type, const char *name, int lx=1, int ly=0, int lz=0)' at line 161 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool NcFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::read(char *var, const char *name, int n=1) override' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::read(char *var, const std::string &name, int n=1) override' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool Ncxx4::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::read(char *var, const char *name, int n=1) override' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::read(char *var, const std::string &name, int n=1) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 105 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool PncFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 84 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 85 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 86 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 87 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'virtual void OptionParser::read(Options *options, const std::string &filename)=0' at line 56 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/options/optionparser.hxx
  'void OptionINI::read(Options *options, const std::string &filename) override' at line 51 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/options/options_ini.hxx
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.cxx:834: warning: no uniquely matching class member found for 
  bool NcFormat::write(int *var, const string &name, int lx, int ly, int lz)
Possible candidates:
  'bool Datafile::write()' at line 95 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/datafile.hxx
  'bool Datafile::write(const char *filename,...) const' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/datafile.hxx
  'virtual bool DataFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 97 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'virtual bool DataFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'virtual bool DataFormat::write(char *var, const char *name, int n=1)=0' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'virtual bool DataFormat::write(char *var, const std::string &name, int n=1)=0' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'virtual bool DataFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'virtual bool DataFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'void bout::experimental::OptionsNetCDF::write(const Options &options)' at line 63 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/options_netcdf.hxx
  'void OptionsReader::write(Options *options, const char *file,...)' at line 72 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/optionsreader.hxx
  'virtual void Output::write(const char *string,...)' at line 92 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/output.hxx
  'void DummyOutput::write(const char *str,...) override' at line 133 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/output.hxx
  'void ConditionalOutput::write(const char *str,...) override' at line 162 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/output.hxx
  'bool EmptyFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 61 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 63 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 65 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 67 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx
  'bool H5Format::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write(char *var, const char *name, int n=1) override' at line 105 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write(char *var, const std::string &name, int n=1) override' at line 106 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 107 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write(void *var, hid_t mem_hdf5_type, const char *name, int lx=0, int ly=0, int lz=0)' at line 162 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool NcFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 107 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::write(char *var, const char *name, int n=1) override' at line 109 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::write(char *var, const std::string &name, int n=1) override' at line 110 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 111 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 112 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool Ncxx4::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 109 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::write(char *var, const char *name, int n=1) override' at line 110 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::write(char *var, const std::string &name, int n=1) override' at line 111 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 112 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 113 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool PncFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 89 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 90 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 91 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 92 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'virtual void OptionParser::write(Options *options, const std::string &filename)=0' at line 59 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/options/optionparser.hxx
  'void OptionINI::write(Options *options, const std::string &filename) override' at line 54 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/options/options_ini.hxx
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.cxx:879: warning: no uniquely matching class member found for 
  bool NcFormat::write(char *var, const string &name, int n)
Possible candidates:
  'bool Datafile::write()' at line 95 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/datafile.hxx
  'bool Datafile::write(const char *filename,...) const' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/datafile.hxx
  'virtual bool DataFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 97 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'virtual bool DataFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'virtual bool DataFormat::write(char *var, const char *name, int n=1)=0' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'virtual bool DataFormat::write(char *var, const std::string &name, int n=1)=0' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'virtual bool DataFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'virtual bool DataFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'void bout::experimental::OptionsNetCDF::write(const Options &options)' at line 63 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/options_netcdf.hxx
  'void OptionsReader::write(Options *options, const char *file,...)' at line 72 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/optionsreader.hxx
  'virtual void Output::write(const char *string,...)' at line 92 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/output.hxx
  'void DummyOutput::write(const char *str,...) override' at line 133 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/output.hxx
  'void ConditionalOutput::write(const char *str,...) override' at line 162 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/output.hxx
  'bool EmptyFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 61 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 63 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 65 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 67 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx
  'bool H5Format::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write(char *var, const char *name, int n=1) override' at line 105 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write(char *var, const std::string &name, int n=1) override' at line 106 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 107 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write(void *var, hid_t mem_hdf5_type, const char *name, int lx=0, int ly=0, int lz=0)' at line 162 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool NcFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 107 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::write(char *var, const char *name, int n=1) override' at line 109 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::write(char *var, const std::string &name, int n=1) override' at line 110 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 111 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 112 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool Ncxx4::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 109 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::write(char *var, const char *name, int n=1) override' at line 110 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::write(char *var, const std::string &name, int n=1) override' at line 111 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 112 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 113 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool PncFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 89 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 90 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 91 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 92 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'virtual void OptionParser::write(Options *options, const std::string &filename)=0' at line 59 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/options/optionparser.hxx
  'void OptionINI::write(Options *options, const std::string &filename) override' at line 54 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/options/options_ini.hxx
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.cxx:941: warning: no uniquely matching class member found for 
  bool NcFormat::write(double *var, const string &name, int lx, int ly, int lz)
Possible candidates:
  'bool Datafile::write()' at line 95 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/datafile.hxx
  'bool Datafile::write(const char *filename,...) const' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/datafile.hxx
  'virtual bool DataFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 97 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'virtual bool DataFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'virtual bool DataFormat::write(char *var, const char *name, int n=1)=0' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'virtual bool DataFormat::write(char *var, const std::string &name, int n=1)=0' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'virtual bool DataFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'virtual bool DataFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'void bout::experimental::OptionsNetCDF::write(const Options &options)' at line 63 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/options_netcdf.hxx
  'void OptionsReader::write(Options *options, const char *file,...)' at line 72 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/optionsreader.hxx
  'virtual void Output::write(const char *string,...)' at line 92 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/output.hxx
  'void DummyOutput::write(const char *str,...) override' at line 133 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/output.hxx
  'void ConditionalOutput::write(const char *str,...) override' at line 162 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/output.hxx
  'bool EmptyFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 61 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 63 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 65 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 67 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx
  'bool H5Format::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write(char *var, const char *name, int n=1) override' at line 105 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write(char *var, const std::string &name, int n=1) override' at line 106 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 107 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write(void *var, hid_t mem_hdf5_type, const char *name, int lx=0, int ly=0, int lz=0)' at line 162 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool NcFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 107 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::write(char *var, const char *name, int n=1) override' at line 109 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::write(char *var, const std::string &name, int n=1) override' at line 110 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 111 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 112 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool Ncxx4::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 109 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::write(char *var, const char *name, int n=1) override' at line 110 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::write(char *var, const std::string &name, int n=1) override' at line 111 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 112 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 113 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool PncFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 89 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 90 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 91 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 92 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'virtual void OptionParser::write(Options *options, const std::string &filename)=0' at line 59 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/options/optionparser.hxx
  'void OptionINI::write(Options *options, const std::string &filename) override' at line 54 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/options/options_ini.hxx
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.cxx:1043: warning: no uniquely matching class member found for 
  bool NcFormat::read_rec(int *var, const string &name, int lx, int ly, int lz)
Possible candidates:
  'virtual bool DataFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 107 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'virtual bool DataFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'virtual bool DataFormat::read_rec(char *var, const char *name, int n=1)=0' at line 109 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'virtual bool DataFormat::read_rec(char *var, const std::string &name, int n=1)=0' at line 110 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'virtual bool DataFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 111 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'virtual bool DataFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 112 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'bool EmptyFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 70 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 72 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 74 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 76 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx
  'bool H5Format::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 113 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 114 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read_rec(char *var, const char *name, int n=1) override' at line 115 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read_rec(char *var, const std::string &name, int n=1) override' at line 116 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 117 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read_rec(void *var, hid_t hdf5_type, const char *name, int lx=1, int ly=0, int lz=0)' at line 163 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool NcFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 117 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::read_rec(char *var, const char *name, int n=1) override' at line 119 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::read_rec(char *var, const std::string &name, int n=1) override' at line 120 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 121 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 122 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool Ncxx4::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 119 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::read_rec(char *var, const char *name, int n=1) override' at line 120 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::read_rec(char *var, const std::string &name, int n=1) override' at line 121 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 122 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 123 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool PncFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 96 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 97 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.cxx:1089: warning: no uniquely matching class member found for 
  bool NcFormat::read_rec(char *var, const string &name, int n)
Possible candidates:
  'virtual bool DataFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 107 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'virtual bool DataFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'virtual bool DataFormat::read_rec(char *var, const char *name, int n=1)=0' at line 109 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'virtual bool DataFormat::read_rec(char *var, const std::string &name, int n=1)=0' at line 110 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'virtual bool DataFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 111 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'virtual bool DataFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 112 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'bool EmptyFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 70 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 72 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 74 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 76 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx
  'bool H5Format::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 113 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 114 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read_rec(char *var, const char *name, int n=1) override' at line 115 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read_rec(char *var, const std::string &name, int n=1) override' at line 116 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 117 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read_rec(void *var, hid_t hdf5_type, const char *name, int lx=1, int ly=0, int lz=0)' at line 163 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool NcFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 117 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::read_rec(char *var, const char *name, int n=1) override' at line 119 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::read_rec(char *var, const std::string &name, int n=1) override' at line 120 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 121 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 122 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool Ncxx4::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 119 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::read_rec(char *var, const char *name, int n=1) override' at line 120 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::read_rec(char *var, const std::string &name, int n=1) override' at line 121 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 122 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 123 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool PncFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 96 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 97 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.cxx:1130: warning: no uniquely matching class member found for 
  bool NcFormat::read_rec(double *var, const string &name, int lx, int ly, int lz)
Possible candidates:
  'virtual bool DataFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 107 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'virtual bool DataFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'virtual bool DataFormat::read_rec(char *var, const char *name, int n=1)=0' at line 109 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'virtual bool DataFormat::read_rec(char *var, const std::string &name, int n=1)=0' at line 110 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'virtual bool DataFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 111 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'virtual bool DataFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 112 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'bool EmptyFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 70 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 72 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 74 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 76 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx
  'bool H5Format::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 113 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 114 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read_rec(char *var, const char *name, int n=1) override' at line 115 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read_rec(char *var, const std::string &name, int n=1) override' at line 116 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 117 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read_rec(void *var, hid_t hdf5_type, const char *name, int lx=1, int ly=0, int lz=0)' at line 163 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool NcFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 117 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::read_rec(char *var, const char *name, int n=1) override' at line 119 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::read_rec(char *var, const std::string &name, int n=1) override' at line 120 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 121 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 122 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool Ncxx4::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 119 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::read_rec(char *var, const char *name, int n=1) override' at line 120 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::read_rec(char *var, const std::string &name, int n=1) override' at line 121 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 122 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 123 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool PncFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 96 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 97 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.cxx:1212: warning: no uniquely matching class member found for 
  bool NcFormat::write_rec(int *var, const string &name, int lx, int ly, int lz)
Possible candidates:
  'virtual bool DataFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 115 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'virtual bool DataFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 116 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'virtual bool DataFormat::write_rec(char *var, const char *name, int n=1)=0' at line 117 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'virtual bool DataFormat::write_rec(char *var, const std::string &name, int n=1)=0' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'virtual bool DataFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 119 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'virtual bool DataFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 120 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'bool EmptyFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 79 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 81 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 83 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 85 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx
  'bool H5Format::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 121 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 122 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write_rec(char *var, const char *name, int n=1) override' at line 123 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write_rec(char *var, const std::string &name, int n=1) override' at line 124 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 125 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 126 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write_rec(void *var, hid_t mem_hdf5_type, const char *name, int lx=0, int ly=0, int lz=0)' at line 164 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool NcFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 125 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 126 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::write_rec(char *var, const char *name, int n=1) override' at line 127 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::write_rec(char *var, const std::string &name, int n=1) override' at line 128 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 129 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 130 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool Ncxx4::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 126 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 127 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::write_rec(char *var, const char *name, int n=1) override' at line 128 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::write_rec(char *var, const std::string &name, int n=1) override' at line 129 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 130 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 131 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool PncFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.cxx:1260: warning: no uniquely matching class member found for 
  bool NcFormat::write_rec(char *var, const string &name, int n)
Possible candidates:
  'virtual bool DataFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 115 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'virtual bool DataFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 116 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'virtual bool DataFormat::write_rec(char *var, const char *name, int n=1)=0' at line 117 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'virtual bool DataFormat::write_rec(char *var, const std::string &name, int n=1)=0' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'virtual bool DataFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 119 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'virtual bool DataFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 120 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'bool EmptyFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 79 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 81 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 83 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 85 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx
  'bool H5Format::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 121 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 122 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write_rec(char *var, const char *name, int n=1) override' at line 123 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write_rec(char *var, const std::string &name, int n=1) override' at line 124 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 125 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 126 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write_rec(void *var, hid_t mem_hdf5_type, const char *name, int lx=0, int ly=0, int lz=0)' at line 164 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool NcFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 125 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 126 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::write_rec(char *var, const char *name, int n=1) override' at line 127 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::write_rec(char *var, const std::string &name, int n=1) override' at line 128 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 129 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 130 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool Ncxx4::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 126 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 127 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::write_rec(char *var, const char *name, int n=1) override' at line 128 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::write_rec(char *var, const std::string &name, int n=1) override' at line 129 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 130 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 131 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool PncFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.cxx:1335: warning: no uniquely matching class member found for 
  bool NcFormat::write_rec(double *var, const string &name, int lx, int ly, int lz)
Possible candidates:
  'virtual bool DataFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 115 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'virtual bool DataFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 116 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'virtual bool DataFormat::write_rec(char *var, const char *name, int n=1)=0' at line 117 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'virtual bool DataFormat::write_rec(char *var, const std::string &name, int n=1)=0' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'virtual bool DataFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 119 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'virtual bool DataFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 120 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'bool EmptyFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 79 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 81 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 83 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 85 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx
  'bool H5Format::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 121 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 122 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write_rec(char *var, const char *name, int n=1) override' at line 123 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write_rec(char *var, const std::string &name, int n=1) override' at line 124 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 125 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 126 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write_rec(void *var, hid_t mem_hdf5_type, const char *name, int lx=0, int ly=0, int lz=0)' at line 164 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool NcFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 125 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 126 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::write_rec(char *var, const char *name, int n=1) override' at line 127 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::write_rec(char *var, const std::string &name, int n=1) override' at line 128 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 129 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 130 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool Ncxx4::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 126 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 127 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::write_rec(char *var, const char *name, int n=1) override' at line 128 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::write_rec(char *var, const std::string &name, int n=1) override' at line 129 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 130 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 131 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool PncFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.cxx:295: warning: no uniquely matching class member found for 
  bool PncFormat::read(int *var, const string &name, int lx, int ly, int lz)
Possible candidates:
  'bool Datafile::read()' at line 94 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/datafile.hxx
  'virtual bool DataFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 89 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'virtual bool DataFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 90 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'virtual bool DataFormat::read(char *var, const char *name, int n=1)=0' at line 91 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'virtual bool DataFormat::read(char *var, const std::string &name, int n=1)=0' at line 92 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'virtual bool DataFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 93 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'virtual bool DataFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 94 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'Options bout::experimental::OptionsNetCDF::read()' at line 60 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/options_netcdf.hxx
  'void OptionsReader::read(Options *options, const char *file,...)' at line 65 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/optionsreader.hxx
  'bool EmptyFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 52 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 54 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 56 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 58 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx
  'bool H5Format::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 95 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 96 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read(char *var, const char *name, int n=1) override' at line 97 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read(char *var, const std::string &name, int n=1) override' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read(void *var, hid_t hdf5_type, const char *name, int lx=1, int ly=0, int lz=0)' at line 161 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool NcFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::read(char *var, const char *name, int n=1) override' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::read(char *var, const std::string &name, int n=1) override' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool Ncxx4::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::read(char *var, const char *name, int n=1) override' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::read(char *var, const std::string &name, int n=1) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 105 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool PncFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 84 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 85 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 86 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 87 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'virtual void OptionParser::read(Options *options, const std::string &filename)=0' at line 56 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/options/optionparser.hxx
  'void OptionINI::read(Options *options, const std::string &filename) override' at line 51 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/options/options_ini.hxx
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.cxx:354: warning: no uniquely matching class member found for 
  bool PncFormat::read(double *var, const string &name, int lx, int ly, int lz)
Possible candidates:
  'bool Datafile::read()' at line 94 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/datafile.hxx
  'virtual bool DataFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 89 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'virtual bool DataFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 90 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'virtual bool DataFormat::read(char *var, const char *name, int n=1)=0' at line 91 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'virtual bool DataFormat::read(char *var, const std::string &name, int n=1)=0' at line 92 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'virtual bool DataFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 93 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'virtual bool DataFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 94 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'Options bout::experimental::OptionsNetCDF::read()' at line 60 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/options_netcdf.hxx
  'void OptionsReader::read(Options *options, const char *file,...)' at line 65 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/optionsreader.hxx
  'bool EmptyFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 52 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 54 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 56 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 58 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx
  'bool H5Format::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 95 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 96 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read(char *var, const char *name, int n=1) override' at line 97 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read(char *var, const std::string &name, int n=1) override' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read(void *var, hid_t hdf5_type, const char *name, int lx=1, int ly=0, int lz=0)' at line 161 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool NcFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::read(char *var, const char *name, int n=1) override' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::read(char *var, const std::string &name, int n=1) override' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool Ncxx4::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::read(char *var, const char *name, int n=1) override' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::read(char *var, const std::string &name, int n=1) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 105 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool PncFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 84 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 85 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 86 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 87 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'virtual void OptionParser::read(Options *options, const std::string &filename)=0' at line 56 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/options/optionparser.hxx
  'void OptionINI::read(Options *options, const std::string &filename) override' at line 51 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/options/options_ini.hxx
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.cxx:402: warning: no uniquely matching class member found for 
  bool PncFormat::write(int *var, const string &name, int lx, int ly, int lz)
Possible candidates:
  'bool Datafile::write()' at line 95 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/datafile.hxx
  'bool Datafile::write(const char *filename,...) const' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/datafile.hxx
  'virtual bool DataFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 97 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'virtual bool DataFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'virtual bool DataFormat::write(char *var, const char *name, int n=1)=0' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'virtual bool DataFormat::write(char *var, const std::string &name, int n=1)=0' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'virtual bool DataFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'virtual bool DataFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'void bout::experimental::OptionsNetCDF::write(const Options &options)' at line 63 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/options_netcdf.hxx
  'void OptionsReader::write(Options *options, const char *file,...)' at line 72 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/optionsreader.hxx
  'virtual void Output::write(const char *string,...)' at line 92 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/output.hxx
  'void DummyOutput::write(const char *str,...) override' at line 133 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/output.hxx
  'void ConditionalOutput::write(const char *str,...) override' at line 162 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/output.hxx
  'bool EmptyFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 61 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 63 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 65 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 67 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx
  'bool H5Format::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write(char *var, const char *name, int n=1) override' at line 105 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write(char *var, const std::string &name, int n=1) override' at line 106 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 107 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write(void *var, hid_t mem_hdf5_type, const char *name, int lx=0, int ly=0, int lz=0)' at line 162 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool NcFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 107 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::write(char *var, const char *name, int n=1) override' at line 109 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::write(char *var, const std::string &name, int n=1) override' at line 110 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 111 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 112 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool Ncxx4::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 109 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::write(char *var, const char *name, int n=1) override' at line 110 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::write(char *var, const std::string &name, int n=1) override' at line 111 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 112 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 113 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool PncFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 89 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 90 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 91 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 92 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'virtual void OptionParser::write(Options *options, const std::string &filename)=0' at line 59 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/options/optionparser.hxx
  'void OptionINI::write(Options *options, const std::string &filename) override' at line 54 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/options/options_ini.hxx
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.cxx:488: warning: no uniquely matching class member found for 
  bool PncFormat::write(double *var, const string &name, int lx, int ly, int lz)
Possible candidates:
  'bool Datafile::write()' at line 95 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/datafile.hxx
  'bool Datafile::write(const char *filename,...) const' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/datafile.hxx
  'virtual bool DataFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 97 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'virtual bool DataFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'virtual bool DataFormat::write(char *var, const char *name, int n=1)=0' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'virtual bool DataFormat::write(char *var, const std::string &name, int n=1)=0' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'virtual bool DataFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'virtual bool DataFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'void bout::experimental::OptionsNetCDF::write(const Options &options)' at line 63 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/options_netcdf.hxx
  'void OptionsReader::write(Options *options, const char *file,...)' at line 72 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/optionsreader.hxx
  'virtual void Output::write(const char *string,...)' at line 92 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/output.hxx
  'void DummyOutput::write(const char *str,...) override' at line 133 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/output.hxx
  'void ConditionalOutput::write(const char *str,...) override' at line 162 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/output.hxx
  'bool EmptyFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 61 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 63 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 65 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 67 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx
  'bool H5Format::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write(char *var, const char *name, int n=1) override' at line 105 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write(char *var, const std::string &name, int n=1) override' at line 106 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 107 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write(void *var, hid_t mem_hdf5_type, const char *name, int lx=0, int ly=0, int lz=0)' at line 162 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool NcFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 107 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::write(char *var, const char *name, int n=1) override' at line 109 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::write(char *var, const std::string &name, int n=1) override' at line 110 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 111 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 112 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool Ncxx4::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 109 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::write(char *var, const char *name, int n=1) override' at line 110 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::write(char *var, const std::string &name, int n=1) override' at line 111 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 112 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 113 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool PncFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 89 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 90 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 91 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 92 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'virtual void OptionParser::write(Options *options, const std::string &filename)=0' at line 59 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/options/optionparser.hxx
  'void OptionINI::write(Options *options, const std::string &filename) override' at line 54 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/options/options_ini.hxx
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.cxx:524: warning: no uniquely matching class member found for 
  bool PncFormat::read_rec(int *var, const string &name, int lx, int ly, int lz)
Possible candidates:
  'virtual bool DataFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 107 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'virtual bool DataFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'virtual bool DataFormat::read_rec(char *var, const char *name, int n=1)=0' at line 109 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'virtual bool DataFormat::read_rec(char *var, const std::string &name, int n=1)=0' at line 110 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'virtual bool DataFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 111 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'virtual bool DataFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 112 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'bool EmptyFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 70 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 72 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 74 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 76 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx
  'bool H5Format::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 113 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 114 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read_rec(char *var, const char *name, int n=1) override' at line 115 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read_rec(char *var, const std::string &name, int n=1) override' at line 116 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 117 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read_rec(void *var, hid_t hdf5_type, const char *name, int lx=1, int ly=0, int lz=0)' at line 163 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool NcFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 117 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::read_rec(char *var, const char *name, int n=1) override' at line 119 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::read_rec(char *var, const std::string &name, int n=1) override' at line 120 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 121 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 122 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool Ncxx4::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 119 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::read_rec(char *var, const char *name, int n=1) override' at line 120 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::read_rec(char *var, const std::string &name, int n=1) override' at line 121 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 122 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 123 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool PncFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 96 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 97 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.cxx:556: warning: no uniquely matching class member found for 
  bool PncFormat::read_rec(double *var, const string &name, int lx, int ly, int lz)
Possible candidates:
  'virtual bool DataFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 107 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'virtual bool DataFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'virtual bool DataFormat::read_rec(char *var, const char *name, int n=1)=0' at line 109 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'virtual bool DataFormat::read_rec(char *var, const std::string &name, int n=1)=0' at line 110 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'virtual bool DataFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 111 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'virtual bool DataFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 112 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'bool EmptyFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 70 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 72 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 74 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 76 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx
  'bool H5Format::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 113 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 114 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read_rec(char *var, const char *name, int n=1) override' at line 115 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read_rec(char *var, const std::string &name, int n=1) override' at line 116 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 117 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read_rec(void *var, hid_t hdf5_type, const char *name, int lx=1, int ly=0, int lz=0)' at line 163 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool NcFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 117 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::read_rec(char *var, const char *name, int n=1) override' at line 119 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::read_rec(char *var, const std::string &name, int n=1) override' at line 120 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 121 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 122 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool Ncxx4::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 119 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::read_rec(char *var, const char *name, int n=1) override' at line 120 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::read_rec(char *var, const std::string &name, int n=1) override' at line 121 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 122 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 123 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool PncFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 96 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 97 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.cxx:605: warning: no uniquely matching class member found for 
  bool PncFormat::write_rec(int *var, const string &name, int lx, int ly, int lz)
Possible candidates:
  'virtual bool DataFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 115 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'virtual bool DataFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 116 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'virtual bool DataFormat::write_rec(char *var, const char *name, int n=1)=0' at line 117 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'virtual bool DataFormat::write_rec(char *var, const std::string &name, int n=1)=0' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'virtual bool DataFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 119 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'virtual bool DataFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 120 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'bool EmptyFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 79 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 81 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 83 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 85 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx
  'bool H5Format::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 121 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 122 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write_rec(char *var, const char *name, int n=1) override' at line 123 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write_rec(char *var, const std::string &name, int n=1) override' at line 124 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 125 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 126 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write_rec(void *var, hid_t mem_hdf5_type, const char *name, int lx=0, int ly=0, int lz=0)' at line 164 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool NcFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 125 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 126 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::write_rec(char *var, const char *name, int n=1) override' at line 127 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::write_rec(char *var, const std::string &name, int n=1) override' at line 128 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 129 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 130 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool Ncxx4::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 126 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 127 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::write_rec(char *var, const char *name, int n=1) override' at line 128 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::write_rec(char *var, const std::string &name, int n=1) override' at line 129 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 130 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 131 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool PncFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.cxx:681: warning: no uniquely matching class member found for 
  bool PncFormat::write_rec(double *var, const string &name, int lx, int ly, int lz)
Possible candidates:
  'virtual bool DataFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 115 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'virtual bool DataFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 116 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'virtual bool DataFormat::write_rec(char *var, const char *name, int n=1)=0' at line 117 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'virtual bool DataFormat::write_rec(char *var, const std::string &name, int n=1)=0' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'virtual bool DataFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 119 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'virtual bool DataFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 120 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx
  'bool EmptyFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 79 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 81 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 83 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 85 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/emptyformat.hxx
  'bool H5Format::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 121 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 122 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write_rec(char *var, const char *name, int n=1) override' at line 123 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write_rec(char *var, const std::string &name, int n=1) override' at line 124 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 125 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 126 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write_rec(void *var, hid_t mem_hdf5_type, const char *name, int lx=0, int ly=0, int lz=0)' at line 164 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx
  'bool NcFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 125 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 126 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::write_rec(char *var, const char *name, int n=1) override' at line 127 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::write_rec(char *var, const std::string &name, int n=1) override' at line 128 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 129 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 130 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx
  'bool Ncxx4::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 126 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 127 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::write_rec(char *var, const char *name, int n=1) override' at line 128 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::write_rec(char *var, const std::string &name, int n=1) override' at line 129 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 130 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 131 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool PncFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx
c/sys/boutcomm.cxx...
Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/boutexception.cxx...
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Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/derivs.cxx...
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Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/expressionparser.cxx...
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Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/msg_stack.cxx...
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Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/options.cxx...
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Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/options/optionparser.hxx...
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Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/options/options_ini.cxx...
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Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/options/options_ini.hxx...
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Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/options/options_netcdf.cxx...
Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/options/options_netcdf.cxx...
Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/optionsreader.cxx...
Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/optionsreader.cxx...
Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/output.cxx...
Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/output.cxx...
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Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/slepclib.cxx...
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Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/timer.cxx...
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Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/utils.cxx...
Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/utils.cxx...
Building macro definition list...
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Sortin/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/boundary_factory.cxx:80: warning: no uniquely matching class member found for 
  BoundaryOpBase * BoundaryFactory::create(const string &name, BoundaryRegionBase *region)
Possible candidates:
  'BoundaryOpBase * BoundaryFactory::create(const std::string &name, BoundaryRegionBase *region)' at line 70 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/boundary_factory.hxx
  'BoundaryOpBase * BoundaryFactory::create(const char *name, BoundaryRegionBase *region)' at line 71 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/boundary_factory.hxx
  'template < Args >
  BaseType * Factory< BaseType, TypeCreator >::create(const std::string &name, Args &&... args)' at line 57 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/generic_factory.hxx
  'static LaplaceXZ * LaplaceXZ::create(Mesh *m=nullptr, Options *opt=nullptr, const CELL_LOC loc=CELL_CENTRE)' at line 51 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/invert/laplacexz.hxx
  'static Mesh * Mesh::create(GridDataSource *source, Options *opt=nullptr)' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/mesh.hxx
  'static Mesh * Mesh::create(Options *opt=nullptr)' at line 110 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/mesh.hxx
  'static Solver * Solver::create(Options *opts=nullptr)' at line 308 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/solver.hxx
  'static Solver * Solver::create(const SolverType &type, Options *opts=nullptr)' at line 311 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/solver.hxx
  'Interpolation * InterpolationFactory::create(Mesh *mesh)' at line 49 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/interpolation_factory.hxx
  'Interpolation * InterpolationFactory::create(Options *options=nullptr, Mesh *mesh=nullptr)' at line 50 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/interpolation_factory.hxx
  'Interpolation * InterpolationFactory::create(const std::string &name, Options *options=nullptr, Mesh *mesh=nullptr)' at line 59 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/interpolation_factory.hxx
  'static Laplacian * Laplacian::create(Options *opt=nullptr, const CELL_LOC loc=CELL_CENTRE, Mesh *mesh_in=nullptr)' at line 212 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/invert_laplace.hxx
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/boundary_factory.cxx:210: warning: no matching class member found for 
  BoundaryOpBase * BoundaryFactory::createFromOptions(const string &varname, BoundaryRegionBase *region)
Possible candidates:
  'BoundaryOpBase * BoundaryFactory::createFromOptions(const std::string &varname, BoundaryRegionBase *region)' at line 74 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/boundary_factory.hxx
  'BoundaryOpBase * BoundaryFactory::createFromOptions(const char *varname, BoundaryRegionBase *region)' at line 75 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/boundary_factory.hxx
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/boundary_factory.cxx:313: warning: no uniquely matching class member found for 
  void BoundaryFactory::add(BoundaryOp *bop, const string &name)
Possible candidates:
  'void BoundaryFactory::add(BoundaryOp *bop, const std::string &name)' at line 81 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/boundary_factory.hxx
  'void BoundaryFactory::add(BoundaryOp *bop, const char *name)' at line 88 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/boundary_factory.hxx
  'void BoundaryFactory::add(BoundaryOpPar *bop, const std::string &name)' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/boundary_factory.hxx
  'void BoundaryFactory::add(BoundaryOpPar *bop, const char *name)' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/boundary_factory.hxx
  'void FieldGroup::add(const FieldGroup &other)' at line 70 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/fieldgroup.hxx
  'void FieldGroup::add(FieldData &f)' at line 86 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/fieldgroup.hxx
  'void FieldGroup::add(Field3D &f)' at line 95 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/fieldgroup.hxx
  'void FieldGroup::add(Vector2D &v)' at line 105 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/fieldgroup.hxx
  'void FieldGroup::add(Vector3D &v)' at line 116 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/fieldgroup.hxx
  'template < Ts >
  void FieldGroup::add(FieldData &t, Ts &... ts)' at line 131 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/fieldgroup.hxx
  'template < Ts >
  void FieldGroup::add(Field3D &t, Ts &... ts)' at line 137 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/fieldgroup.hxx
  'template < Ts >
  void FieldGroup::add(Vector3D &t, Ts &... ts)' at line 143 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/fieldgroup.hxx
  'template < Ts >
  void FieldGroup::add(Vector2D &t, Ts &... ts)' at line 149 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/fieldgroup.hxx
  'virtual bool Factory< BaseType, TypeCreator >::add(const std::string &name, TypeCreator creator)' at line 42 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/generic_factory.hxx
  'virtual void Solver::add(Field2D &v, const std::string &name, const std::string &description="")' at line 236 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/solver.hxx
  'virtual void Solver::add(Field3D &v, const std::string &name, const std::string &description="")' at line 237 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/solver.hxx
  'virtual void Solver::add(Vector2D &v, const std::string &name, const std::string &description="")' at line 238 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/solver.hxx
  'virtual void Solver::add(Vector3D &v, const std::string &name, const std::string &description="")' at line 239 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/solver.hxx
  'void Datafile::add(int &i, const char *name, bool save_repeat=false, const std::string &description="")' at line 73 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/datafile.hxx
  'void Datafile::add(std::vector< int > &ivec, const char *name, bool save_repeat=false, const std::string &description="")' at line 75 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/datafile.hxx
  'void Datafile::add(std::string &s, const char *name, bool save_repeat=false, const std::string &description="")' at line 77 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/datafile.hxx
  'void Datafile::add(BoutReal &r, const char *name, bool save_repeat=false, const std::string &description="")' at line 79 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/datafile.hxx
  'void Datafile::add(bool &b, const char *name, bool save_repeat=false, const std::string &description="")' at line 81 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/datafile.hxx
  'void Datafile::add(Field2D &f, const char *name, bool save_repeat=false, const std::string &description="")' at line 83 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/datafile.hxx
  'void Datafile::add(Field3D &f, const char *name, bool save_repeat=false, const std::string &description="")' at line 85 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/datafile.hxx
  'void Datafile::add(FieldPerp &f, const char *name, bool save_repeat=false, const std::string &description="")' at line 87 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/datafile.hxx
  'void Datafile::add(Vector2D &f, const char *name, bool save_repeat=false, const std::string &description="")' at line 89 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/datafile.hxx
  'void Datafile::add(Vector3D &f, const char *name, bool save_repeat=false, const std::string &description="")' at line 91 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/datafile.hxx
  'void InterpolationFactory::add(CreateInterpCallback interp, const std::string &name)' at line 63 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/interpolation_factory.hxx
  'void multioutbuf< char_type, traits >::add(std::basic_ostream< char_type, traits > &str)' at line 19 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/multiostream.hxx
  'void multiostream< char_type, traits >::add(std::basic_ostream< char_type, traits > &str)' at line 84 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/multiostream.hxx
  'void Output::add(std::basic_ostream< char, _Tr > &str)' at line 105 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/output.hxx
  'void SlepcSolver::add(Field2D &v, const std::string &name, const std::string &description="") override' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/slepc/slepc.hxx
  'void SlepcSolver::add(Field3D &v, const std::string &name, const std::string &description="") override' at line 106 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/slepc/slepc.hxx
  'void SlepcSolver::add(Vector2D &v, const std::string &name, const std::string &description="") override' at line 113 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/slepc/slepc.hxx
  'void SlepcSolver::add(Vector3D &v, const std::string &name, const std::string &description="") override' at line 120 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/slepc/slepc.hxx
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/boundary_factory.cxx:326: warning: no uniquely matching class member found for 
  void BoundaryFactory::add(BoundaryOpPar *bop, const string &name)
Possible candidates:
  'void BoundaryFactory::add(BoundaryOp *bop, const std::string &name)' at line 81 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/boundary_factory.hxx
  'void BoundaryFactory::add(BoundaryOp *bop, const char *name)' at line 88 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/boundary_factory.hxx
  'void BoundaryFactory::add(BoundaryOpPar *bop, const std::string &name)' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/boundary_factory.hxx
  'void BoundaryFactory::add(BoundaryOpPar *bop, const char *name)' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/boundary_factory.hxx
  'void FieldGroup::add(const FieldGroup &other)' at line 70 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/fieldgroup.hxx
  'void FieldGroup::add(FieldData &f)' at line 86 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/fieldgroup.hxx
  'void FieldGroup::add(Field3D &f)' at line 95 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/fieldgroup.hxx
  'void FieldGroup::add(Vector2D &v)' at line 105 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/fieldgroup.hxx
  'void FieldGroup::add(Vector3D &v)' at line 116 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/fieldgroup.hxx
  'template < Ts >
  void FieldGroup::add(FieldData &t, Ts &... ts)' at line 131 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/fieldgroup.hxx
  'template < Ts >
  void FieldGroup::add(Field3D &t, Ts &... ts)' at line 137 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/fieldgroup.hxx
  'template < Ts >
  void FieldGroup::add(Vector3D &t, Ts &... ts)' at line 143 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/fieldgroup.hxx
  'template < Ts >
  void FieldGroup::add(Vector2D &t, Ts &... ts)' at line 149 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/fieldgroup.hxx
  'virtual bool Factory< BaseType, TypeCreator >::add(const std::string &name, TypeCreator creator)' at line 42 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/generic_factory.hxx
  'virtual void Solver::add(Field2D &v, const std::string &name, const std::string &description="")' at line 236 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/solver.hxx
  'virtual void Solver::add(Field3D &v, const std::string &name, const std::string &description="")' at line 237 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/solver.hxx
  'virtual void Solver::add(Vector2D &v, const std::string &name, const std::string &description="")' at line 238 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/solver.hxx
  'virtual void Solver::add(Vector3D &v, const std::string &name, const std::string &description="")' at line 239 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/solver.hxx
  'void Datafile::add(int &i, const char *name, bool save_repeat=false, const std::string &description="")' at line 73 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/datafile.hxx
  'void Datafile::add(std::vector< int > &ivec, const char *name, bool save_repeat=false, const std::string &description="")' at line 75 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/datafile.hxx
  'void Datafile::add(std::string &s, const char *name, bool save_repeat=false, const std::string &description="")' at line 77 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/datafile.hxx
  'void Datafile::add(BoutReal &r, const char *name, bool save_repeat=false, const std::string &description="")' at line 79 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/datafile.hxx
  'void Datafile::add(bool &b, const char *name, bool save_repeat=false, const std::string &description="")' at line 81 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/datafile.hxx
  'void Datafile::add(Field2D &f, const char *name, bool save_repeat=false, const std::string &description="")' at line 83 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/datafile.hxx
  'void Datafile::add(Field3D &f, const char *name, bool save_repeat=false, const std::string &description="")' at line 85 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/datafile.hxx
  'void Datafile::add(FieldPerp &f, const char *name, bool save_repeat=false, const std::string &description="")' at line 87 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/datafile.hxx
  'void Datafile::add(Vector2D &f, const char *name, bool save_repeat=false, const std::string &description="")' at line 89 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/datafile.hxx
  'void Datafile::add(Vector3D &f, const char *name, bool save_repeat=false, const std::string &description="")' at line 91 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/datafile.hxx
  'void InterpolationFactory::add(CreateInterpCallback interp, const std::string &name)' at line 63 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/interpolation_factory.hxx
  'void multioutbuf< char_type, traits >::add(std::basic_ostream< char_type, traits > &str)' at line 19 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/multiostream.hxx
  'void multiostream< char_type, traits >::add(std::basic_ostream< char_type, traits > &str)' at line 84 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/multiostream.hxx
  'void Output::add(std::basic_ostream< char, _Tr > &str)' at line 105 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/output.hxx
  'void SlepcSolver::add(Field2D &v, const std::string &name, const std::string &description="") override' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/slepc/slepc.hxx
  'void SlepcSolver::add(Field3D &v, const std::string &name, const std::string &description="") override' at line 106 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/slepc/slepc.hxx
  'void SlepcSolver::add(Vector2D &v, const std::string &name, const std::string &description="") override' at line 113 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/slepc/slepc.hxx
  'void SlepcSolver::add(Vector3D &v, const std::string &name, const std::string &description="") override' at line 120 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/slepc/slepc.hxx
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/boundary_factory.cxx:339: warning: no matching class member found for 
  void BoundaryFactory::addMod(BoundaryModifier *bmod, const string &name)
Possible candidates:
  'void BoundaryFactory::addMod(BoundaryModifier *bmod, const std::string &name)' at line 93 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/boundary_factory.hxx
  'void BoundaryFactory::addMod(BoundaryModifier *bmod, const char *name)' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/boundary_factory.hxx
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/coordinates.cxx:1229: warning: no matching class member found for 
  Field2D Coordinates::DDZ(const MAYBE_UNUSED(Field2D &f), CELL_LOC loc, const std::string &method, const std::string &region)
Possible candidates:
  'Field2D Coordinates::DDZ(const Field2D &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT", const std::string &region="RGN_NOBNDRY")' at line 184 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/coordinates.hxx
  'Field2D Coordinates::DDZ(const Field2D &f, CELL_LOC outloc, const std::string &method, REGION region)' at line 186 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/coordinates.hxx
  'Field2D Coordinates::DDZ(const Field2D &f, CELL_LOC outloc, DIFF_METHOD method, REGION region=RGN_NOBNDRY)' at line 186 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/coordinates.hxx
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/coordinates.cxx:1244: warning: no matching class member found for 
  Field2D Coordinates::Grad_par(const Field2D &var, MAYBE_UNUSED(CELL_LOC outloc), const std::string &method)
Possible candidates:
  'Field2D Coordinates::Grad_par(const Field2D &var, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT")' at line 189 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/coordinates.hxx
  'Field2D Coordinates::Grad_par(const Field2D &f, CELL_LOC outloc, DIFF_METHOD method)' at line 191 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/coordinates.hxx
  'Field3D Coordinates::Grad_par(const Field3D &var, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT")' at line 193 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/coordinates.hxx
  'Field3D Coordinates::Grad_par(const Field3D &f, CELL_LOC outloc, DIFF_METHOD method)' at line 195 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/coordinates.hxx
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/coordinates.cxx:1265: warning: no matching class member found for 
  Field2D Coordinates::Vpar_Grad_par(const Field2D &v, const Field2D &f, MAYBE_UNUSED(CELL_LOC outloc), const std::string &method)
Possible candidates:
  'Field2D Coordinates::Vpar_Grad_par(const Field2D &v, const Field2D &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT")' at line 198 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/coordinates.hxx
  'Field2D Coordinates::Vpar_Grad_par(const Field2D &v, const Field2D &f, CELL_LOC outloc, DIFF_METHOD method)' at line 203 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/coordinates.hxx
  'Field3D Coordinates::Vpar_Grad_par(const Field3D &v, const Field3D &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT")' at line 208 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/coordinates.hxx
  'Field3D Coordinates::Vpar_Grad_par(const Field3D &v, const Field3D &f, CELL_LOC outloc, DIFF_METHOD method)' at line 213 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/coordinates.hxx
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/index_derivs.cxx:59: warning: no matching class member found for 
  STAGGER Mesh::getStagger(CELL_LOC vloc, MAYBE_UNUSED(CELL_LOC inloc), const CELL_LOC outloc, const CELL_LOC allowedStaggerLoc) const
Possible candidates:
  'STAGGER Mesh::getStagger(const CELL_LOC inloc, const CELL_LOC outloc, const CELL_LOC allowedloc) const' at line 662 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/mesh.hxx
  'STAGGER Mesh::getStagger(const CELL_LOC vloc, const CELL_LOC inloc, const CELL_LOC outloc, const CELL_LOC allowedloc) const' at line 669 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/mesh.hxx
sh: line 1: latex: command not found
error: Problems running latex. Check your installation or look for typos in _formulas.tex and check _formulas.log!
sh: line 1: latex: command not found
error: Problems running latex. Check your installation or look for typos in _formulas_dark.tex and check _formulas_dark.log!
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/bout_enum_class.hxx:68: warning: Unsupported xml/html tag <enum> found
g lists...
Determining which enums are documented
Computing member relations...
Building full member lists recursively...
Adding members to member groups.
Computing member references...
Inheriting documentation...
Generating disk names...
Adding source references...
Adding xrefitems...
Sorting member lists...
Setting anonymous enum type...
Computing dependencies between directories...
Generating citations page...
Counting members...
Counting data structures...
Resolving user defined references...
Finding anchors and sections in the documentation...
Transferring function references...
Combining using relations...
Adding members to index pages...
Correcting members for VHDL...
Computing tooltip texts...
Generating style sheet...
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Generating images for formulas in HTML...
Generating example documentation...
Generating file sources...
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Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/boundary_factory.hxx...
Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/boundary_op.hxx...
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Generating docs for file /builddir/build/BUILD/BOUT++-v4./builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/difops.hxx:290: warning: The following parameter of Div_par_K_Grad_par(BoutReal kY, const Field2D &f, CELL_LOC outloc=CELL_DEFAULT) is not documented:
  parameter 'outloc'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/difops.hxx:198: warning: The following parameter of Grad2_par2(const Field2D &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT") is not documented:
  parameter 'method'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/gyro_average.hxx:52: warning: argument 'flags' of command @param is not found in the argument list of gyroPade0(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags)
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/gyro_average.hxx:52: warning: The following parameters of gyroPade0(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) are not documented:
  parameter 'inner_boundary_flags'
  parameter 'outer_boundary_flags'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/gyro_average.hxx:84: warning: argument 'flags' of command @param is not found in the argument list of gyroPade1(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags)
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/gyro_average.hxx:84: warning: The following parameters of gyroPade1(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) are not documented:
  parameter 'inner_boundary_flags'
  parameter 'outer_boundary_flags'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/gyro_average.hxx:120: warning: argument 'flags' of command @param is not found in the argument list of gyroPade2(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags)
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/gyro_average.hxx:120: warning: The following parameters of gyroPade2(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) are not documented:
  parameter 'inner_boundary_flags'
  parameter 'outer_boundary_flags'
4.2/build_mpich/include/bout/petsclib.hxx...
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Generating docs for file /builddir/build/B/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/difops.hxx:290: warning: The following parameter of Div_par_K_Grad_par(BoutReal kY, const Field2D &f, CELL_LOC outloc=CELL_DEFAULT) is not documented:
  parameter 'outloc'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/difops.hxx:198: warning: The following parameter of Grad2_par2(const Field2D &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT") is not documented:
  parameter 'method'
UILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/naulin/naulin_laplace.cxx...
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Generating docs for file /builddir//builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/gyro_average.hxx:52: warning: argument 'flags' of command @param is not found in the argument list of gyroPade0(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags)
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/gyro_average.hxx:52: warning: The following parameters of gyroPade0(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) are not documented:
  parameter 'inner_boundary_flags'
  parameter 'outer_boundary_flags'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/gyro_average.hxx:84: warning: argument 'flags' of command @param is not found in the argument list of gyroPade1(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags)
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/gyro_average.hxx:84: warning: The following parameters of gyroPade1(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) are not documented:
  parameter 'inner_boundary_flags'
  parameter 'outer_boundary_flags'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/gyro_average.hxx:120: warning: argument 'flags' of command @param is not found in the argument list of gyroPade2(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags)
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/gyro_average.hxx:120: warning: The following parameters of gyroPade2(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) are not documented:
  parameter 'inner_boundary_flags'
  parameter 'outer_boundary_flags'
build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/impls/bout/boutmesh.cxx...
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Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/solver.cxx...
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Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/bout_types.cxx...
Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/boutcomm.cxx...
Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/boutexception.cxx...
Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/derivs.cxx...
Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sy/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/array.hxx:385: warning: Unsupported xml/html tag <size> found
s/expressionparser.cxx...
Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/msg_stack.cxx...
Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/options.cxx...
Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/options/optionparser.hxx...
Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/options/options_ini.cxx...
Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/options/options_ini.hxx...
Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/options/options_netcdf.cxx...
Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/optionsreader.cxx...
Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/output.cxx...
Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/petsclib.cxx...
Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/range.cxx...
Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/slepclib.cxx...
Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/timer.cxx...
Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/type_name.cxx...
Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/utils.cxx...
Generating page documentation...
Generating group documentation...
Generating class documentation...
Generating docs for compound AdamsBashforthSolver...
Generating docs for compound Add...
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Generating docs for compound Array...
Generating docs for compound ArrayData...
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Generating docs for compound asExpr< double >...
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Generating docs for compound Bilinear...
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Generating docs for compound BoundaryDirichlet_2ndOrder...
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Generating docs for nested compound BoundaryRegionPar::IndexPoint...
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Generating docs for co/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx:203: warning: The following parameter of DataFormat::getAttribute(const std::string &varname, const std::string &attrname, BoutReal &value)=0 is not documented:
  parameter 'value'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx:187: warning: The following parameter of DataFormat::getAttribute(const std::string &varname, const std::string &attrname, int &value)=0 is not documented:
  parameter 'value'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx:171: warning: The following parameter of DataFormat::getAttribute(const std::string &varname, const std::string &attrname, std::string &text)=0 is not documented:
  parameter 'text'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/generic_factory.hxx:52: warning: The following parameter of Factory::create(const std::string &name, Args &&... args) is not documented:
  parameter 'args'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/field2d.hxx:58: warning: The following parameters of Field2D::Field2D(Mesh *localmesh=nullptr, CELL_LOC location_in=CELL_CENTRE, DirectionTypes directions_in={YDirectionType::Standard, ZDirectionType::Average}) are not documented:
  parameter 'location_in'
  parameter 'directions_in'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/griddata.hxx:208: warning: The following parameter of GridFromOptions::get(Mesh *mesh, BoutReal &rval, const std::string &name, BoutReal def=0.0) is not documented:
  parameter 'def'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/griddata.hxx:182: warning: The following parameter of GridFromOptions::get(Mesh *mesh, std::string &sval, const std::string &name, const std::string &def="") is not documented:
  parameter 'def'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx:203: warning: The following parameter of H5Format::getAttribute(const std::string &varname, const std::string &attrname, BoutReal &value) is not documented:
  parameter 'value'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx:187: warning: The following parameter of H5Format::getAttribute(const std::string &varname, const std::string &attrname, int &value) is not documented:
  parameter 'value'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx:171: warning: The following parameter of H5Format::getAttribute(const std::string &varname, const std::string &attrname, std::string &text) is not documented:
  parameter 'text'
mpound BoundaryRegionYUp...
Generating docs for compound BoundaryRelax...
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Generati/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/petsc/petsc_laplace.cxx:908: warning: argument 'coef1' from the argument list of LaplacePetsc::Coeffs has multiple @param documentation sections
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/petsc/petsc_laplace.cxx:908: warning: argument 'coef2' from the argument list of LaplacePetsc::Coeffs has multiple @param documentation sections
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/petsc/petsc_laplace.cxx:908: warning: argument 'coef3' from the argument list of LaplacePetsc::Coeffs has multiple @param documentation sections
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/petsc/petsc_laplace.cxx:908: warning: argument 'coef4' from the argument list of LaplacePetsc::Coeffs has multiple @param documentation sections
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/petsc/petsc_laplace.cxx:908: warning: argument 'coef5' from the argument list of LaplacePetsc::Coeffs has multiple @param documentation sections
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/petsc/petsc_laplace.cxx:851: warning: argument 'MatA' from the argument list of LaplacePetsc::Element has multiple @param documentation sections
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/invert_laplace.hxx:208: warning: The following parameters of Laplacian::create(Options *opt=nullptr, const CELL_LOC loc=CELL_CENTRE, Mesh *mesh_in=nullptr) are not documented:
  parameter 'loc'
  parameter 'mesh_in'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/invert_laplace.cxx:380: warning: argument 'avec' from the argument list of Laplacian::tridagMatrix has multiple @param documentation sections
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/invert_laplace.cxx:380: warning: argument 'bvec' from the argument list of Laplacian::tridagMatrix has multiple @param documentation sections
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/invert_laplace.cxx:380: warning: argument 'cvec' from the argument list of Laplacian::tridagMatrix has multiple @param documentation sections
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/mesh.hxx:756: warning: argument 'v' of command @param is not found in the argument list of Mesh::indexVDDX(const T &vel, const T &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT", REGION region=RGN_NOBNDRY) const
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/mesh.hxx:756: warning: The following parameter of Mesh::indexVDDX(const T &vel, const T &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT", REGION region=RGN_NOBNDRY) const is not documented:
  parameter 'vel'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx:203: warning: The following parameter of NcFormat::getAttribute(const std::string &varname, const std::string &attrname, BoutReal &value) is not documented:
  parameter 'value'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx:187: warning: The following parameter of NcFormat::getAttribute(const std::string &varname, const std::string &attrname, int &value) is not documented:
  parameter 'value'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx:171: warning: The following parameter of NcFormat::getAttribute(const std::string &varname, const std::string &attrname, std::string &text) is not documented:
  parameter 'text'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx:203: warning: The following parameter of Ncxx4::getAttribute(const std::string &varname, const std::string &attrname, BoutReal &value) is not documented:
  parameter 'value'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx:187: warning: The following parameter of Ncxx4::getAttribute(const std::string &varname, const std::string &attrname, int &value) is not documented:
  parameter 'value'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx:171: warning: The following parameter of Ncxx4::getAttribute(const std::string &varname, const std::string &attrname, std::string &text) is not documented:
  parameter 'text'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/options.hxx:161: warning: argument 'parent' of command @param is not found in the argument list of Options::Options(Options *parent_instance, std::string full_name)
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/options.hxx:161: warning: argument 'sectionName' of command @param is not found in the argument list of Options::Options(Options *parent_instance, std::string full_name)
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/options.hxx:161: warning: The following parameters of Options::Options(Options *parent_instance, std::string full_name) are not documented:
  parameter 'parent_instance'
  parameter 'full_name'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/physicsmodel.hxx:229: warning: The following parameter of PhysicsModel::bout_solve(Field2D &var, const char *name, const std::string &description="") is not documented:
  parameter 'description'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/paralleltransform.hxx:259: warning: The following parameter of ShiftedMetric::shiftZ(const Field3D &f, const Field2D &zangle, const std::string &region="RGN_NOX") const is not documented:
  parameter 'region'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/paralleltransform.hxx:275: warning: The following parameter of ShiftedMetric::shiftZ(const Field3D &f, const Tensor< dcomplex > &phs, const YDirectionType y_direction_out, const std::string &region="RGN_NOX") const is not documented:
  parameter 'region'
ng docs for compound InvertParCR...
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Generating docs for compound LaplaceCyclic...
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Generating docs for compound LaplaceMultigrid...
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Generating docs for nested compound LaplacePDD::PDD_data...
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Generating docs for compound LaplaceSerialBand...
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Generating docs for nested compound LaplaceSPT::SPT_data...
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Generating docs for compound Laplacian...
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Generating docs for compound ParallelTransform...
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Generating docs for compound PetscLib...
Generating docs for compound PetscSolver...
Generating docs for compound PhysicsModel...
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Generating docs for compound RegisterInFactory< Solver, DerivedType >...
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Generating docs for nested compound ShiftedMetric::ParallelSlicePhase...
Generating docs for compound SlepcLib...
Generating docs for compound SlepcSolver...
Generating docs for compound snes_info...
Generat/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/surfaceiter.hxx:35: warning: The following parameter of SurfaceIter::SurfaceIter(Mesh *mesh, bool include_guards=false) is not documented:
  parameter 'include_guards'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/index_derivs_interface.hxx:276: warning: argument 'v' of command @param is not found in the argument list of bout::derivatives::index::VDDX(const T &vel, const T &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT", const std::string &region="RGN_NOBNDRY")
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/index_derivs_interface.hxx:276: warning: The following parameter of bout::derivatives::index::VDDX(const T &vel, const T &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT", const std::string &region="RGN_NOBNDRY") is not documented:
  parameter 'vel'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/sys/variant.hxx:81: warning: Found unknown command '\v'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/sys/variant.hxx:118: warning: Found unknown command '\v'
ing docs for compound SNESSolver...
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Generating docs for nested compound Solver::VarStr...
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Generating concept documentation...
Generating namespace index...
Generating docs for namespace bout
Generating docs for compound bout::HeatFluxSNB...
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Generating docs for namespace bout::derivatives::index
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Generating docs for compound bout::experimental::CommandLineArgs...
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Generating docs for compound bout::utils::_Unique_if...
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Generating docs for compound pvode::bandmat_type...
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Generating docs for compound uuids::basic_uuid_random_generator...
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Generating graph info page...
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Generating concept index...
Generating annotated compound index...
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Generating hierarchical class index...
Generating member index...
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Generating file member index...
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finalizing index lists...
writing tag file...
Generating XML output...
Generating XML output for class bout::utils::_Unique_if
Generating XML output for class bout::utils::_Unique_if< T[]>
Generating XML output for class bout::utils:/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/array.hxx:385: warning: Unsupported xml/html tag <size> found
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx:171: warning: The following parameter of DataFormat::getAttribute(const std::string &varname, const std::string &attrname, std::string &text)=0 is not documented:
  parameter 'text'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx:187: warning: The following parameter of DataFormat::getAttribute(const std::string &varname, const std::string &attrname, int &value)=0 is not documented:
  parameter 'value'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx:203: warning: The following parameter of DataFormat::getAttribute(const std::string &varname, const std::string &attrname, BoutReal &value)=0 is not documented:
  parameter 'value'
:_Unique_if< T[N]>
Generating XML output for class AdamsBashforthSolver
Generating XML output for class Add
Generating XML output for class bout::utils::function_traits< R(*)(Args...)>::arg
Generating XML output for class ArkodeSolver
Generating XML output for class Array
Generating XML output for class ArrayData
Generating XML output for class asExpr
Generating XML output for class asExpr< double >
Generating XML output for class asExpr< Field3D >
Generating XML output for class asExpr< float >
Generating XML output for class asExpr< int >
Generating XML output for class Options::AttributeType
Generating XML output for class pvode::bandmat_type
Generating XML output for class uuids::basic_uuid_random_generator
Generating XML output for class Bilinear
Generating XML output for class BinaryExpr
Generating XML output for class BinaryResult
Generating XML output for class BoundaryConstGradient
Generating XML output for class BoundaryConstLaplace
Generating XML output for class BoundaryDirichlet
Generating XML output for class BoundaryDirichlet_2ndOrder
Generating XML output for class BoundaryDirichlet_4thOrder
Generating XML output for class BoundaryDirichlet_O3
Generating XML output for class BoundaryDirichlet_O4
Generating XML output for class BoundaryDivCurl
Generating XML output for class BoundaryFactory
Generating XML output for class BoundaryFree
Generating XML output for class BoundaryFree_O2
Generating XML output for class BoundaryFree_O3
Generating XML output for class BoundaryFromFieldAligned
Generating XML output for class BoundaryModifier
Generating XML output for class BoundaryNeumann
Generating XML output for class BoundaryNeumann2
Generating XML output for class BoundaryNeumann_2ndOrder
Generating XML output for class BoundaryNeumann_4thOrder
Generating XML output for class BoundaryNeumann_NonOrthogonal
Generating XML output for class BoundaryNeumann_O4
Generating XML output for class BoundaryNeumannPar
Generating XML output for class BoundaryOp
Generating XML output for class BoundaryOpBase
Generating XML output for class BoundaryOpPar
Generating XML output for class BoundaryOpPar_dirichlet
Generating XML output for class BoundaryOpPar_dirichlet_interp
Generating XML output for class BoundaryOpPar_dirichlet_O3
Generating XML output for class BoundaryOpPar_neumann
Generating XML output for class BoundaryRegion
Generating XML output for class BoundaryRegionBase
Generating XML output for class BoundaryRegionPar
Generating XML output for class BoundaryRegionXIn
Generating XML output for class BoundaryRegionXOut
Generating XML output for class BoundaryRegionYDown
Generating XML output for class BoundaryRegionYUp
Generating XML output for class BoundaryRelax
Generating XML output for class BoundaryRobin
Generating XML output for class BoundaryToFieldAligned
Generating XML output for class BoundaryWidth
Generating XML output for class BoundaryZeroLaplace
Generating XML output for class BoundaryZeroLaplace2
Generating XML output for class BoutComm
Generating XML output for class BoutException
Generating XML output for class BoutIterationFail
Generating XML output for class BoutMask
Generating XML output for class BoutMesh
Generating XML output for class BoutMonitor
Generating XML output for class BoutRhsFail
Generating XML output for class CASHKARPScheme
Generating XML output for class bout::experimental::CommandLineArgs
Generating XML output for class BoutMesh::CommHandle
Generating XML output for class bout::utils::details::CompareTypes
Generating XML output for class bout::utils::details::CompareTypes< T, T >
Generating XML output for class ConditionalOutput
Generating XML output for class Coordinates
Generating XML output for class pvode::CVodeMemRec
Generating XML output for class CvodeSolver
Generating XML output for class CyclicReduce
Generating XML output for class Datafile
Generating XML output for class DataFormat
Generating XML output for class DeferredFunction
Generating XML output for class DerivativeStore
Generating XML output for class DerivativeType
Generating XML output for class DirectionTypes
Gene/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/generic_factory.hxx:52: warning: The following parameter of Factory::create(const std::string &name, Args &&... args) is not documented:
  parameter 'args'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/field2d.hxx:58: warning: The following parameters of Field2D::Field2D(Mesh *localmesh=nullptr, CELL_LOC location_in=CELL_CENTRE, DirectionTypes directions_in={YDirectionType::Standard, ZDirectionType::Average}) are not documented:
  parameter 'location_in'
  parameter 'directions_in'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/griddata.hxx:182: warning: The following parameter of GridFromOptions::get(Mesh *mesh, std::string &sval, const std::string &name, const std::string &def="") is not documented:
  parameter 'def'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/griddata.hxx:208: warning: The following parameter of GridFromOptions::get(Mesh *mesh, BoutReal &rval, const std::string &name, BoutReal def=0.0) is not documented:
  parameter 'def'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx:171: warning: The following parameter of H5Format::getAttribute(const std::string &varname, const std::string &attrname, std::string &text) is not documented:
  parameter 'text'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx:187: warning: The following parameter of H5Format::getAttribute(const std::string &varname, const std::string &attrname, int &value) is not documented:
  parameter 'value'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx:203: warning: The following parameter of H5Format::getAttribute(const std::string &varname, const std::string &attrname, BoutReal &value) is not documented:
  parameter 'value'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/petsc/petsc_laplace.cxx:851: warning: argument 'MatA' from the argument list of LaplacePetsc::Element has multiple @param documentation sections
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/petsc/petsc_laplace.cxx:908: warning: argument 'coef1' from the argument list of LaplacePetsc::Coeffs has multiple @param documentation sections
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/petsc/petsc_laplace.cxx:908: warning: argument 'coef2' from the argument list of LaplacePetsc::Coeffs has multiple @param documentation sections
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/petsc/petsc_laplace.cxx:908: warning: argument 'coef3' from the argument list of LaplacePetsc::Coeffs has multiple @param documentation sections
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/petsc/petsc_laplace.cxx:908: warning: argument 'coef4' from the argument list of LaplacePetsc::Coeffs has multiple @param documentation sections
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/petsc/petsc_laplace.cxx:908: warning: argument 'coef5' from the argument list of LaplacePetsc::Coeffs has multiple @param documentation sections
rating XML output for class Divide
Generating XML output for class DummyOutput
Generating XML output for class EmptyFormat
Generating XML output for class enumWrapper
Generating XML output for class EulerSolver
Generating XML output for class ExpressionParser
Generating XML output for class exprTraits
Generating XML output for class exprTraits< double >
Generating XML output for class exprTraits< float >
Generating XML output for class exprTraits< int >
Generating XML output for class Factory
Generating XML output for class FCIMap
Generating XML output for class FCITransform
Generating XML output for class fcmplx
Generating XML output for class Field
Generating XML output for class gen_fieldops::Field
Generating XML output for class Field2D
Generating XML output for class Field2DExpr
Generating XML output for class Field3D
Generating XML output for class Field3DExpr
Generating XML output for class FieldAbs
Generating XML output for class FieldATan
Generating XML output for class FieldBallooning
Generating XML output for class FieldBinary
Generating XML output for class FieldCos
Generating XML output for class FieldCosh
Generating XML output for class FieldData
Generating XML output for class FieldErf
Generating XML output for class FieldFactory
Generating XML output for class FieldFunction
Generating XML output for class FieldGaussian
Generating XML output for class FieldGenerator
Generating XML output for class FieldGenOneArg
Generating XML output for class FieldGenTwoArg
Generating XML output for class FieldGroup
Generating XML output for class FieldHeaviside
Generating XML output for class FieldMax
Generating XML output for class FieldMin
Generating XML output for class FieldMixmode
Generating XML output for class FieldNull
Generating XML output for class FieldPerp
Generating XML output for class FieldRound
Generating XML output for class FieldSin
Generating XML output for class FieldSinh
Generating XML output for class FieldSqrt
Generating XML output for class FieldTanh
Generating XML output for class FieldTanhHat
Generating XML output for class FieldValue
Generating XML output for class FieldValuePtr
Generating XML output for class FieldVisitor
Generating XML output for class FormatFactory
Generating XML output for class FV::Fromm
Generating XML output for class bout::utils::function_traits
Generating XML output for class bout::utils::function_traits< R(*)(Args...)>
Generating XML output for class GlobalField
Generating XML output for class GlobalField2D
Generating XML output for class GlobalField3D
Generating XML output for class GridDataSource
Generating XML output for class GridFile
Generating XML output for class GridFromOptions
Generating XML output for class H5Format
Generating XML output for class std::hash< uuids::uuid >
Generating XML output for class bout::HeatFluxSNB
Generating XML output for class HermiteSpline
Generating XML output for class IdaSolver
Generating XML output for class IMEXBDF2
Generating XML output for class BoundaryRegionPar::IndexPoint
Generating XML output for class BoundaryRegionPar::Indices
Generating XML output for class Interpolation
Generating XML output for class InterpolationFactory
Generating XML output for class bout::inversion::InvertableOperator
Generating XML output for class InvertPar
Generating XML output for class InvertParCR
Generating XML output for class bout::utils::details::IsEqual
Generating XML output for class KarniadakisSolver
Generating XML output for class Lagrange4pt
Generating XML output for class LaplaceCyclic
Generating XML output for class LaplaceFactory
Generating XML output for class LaplaceMultigrid
Generating XML output for class LaplaceMumps
Generating XML output for class LaplaceNaulin
Generating XML output for class LaplacePDD
Generating XML output for class LaplacePetsc
Generating XML output for class LaplaceSerialBand
Generating XML output for class LaplaceSerialTri
Generating XML output for class LaplaceShoot
Generating XML output for class LaplaceSPT
Generating XML output for class LaplaceXY
Generating XML output for class LaplaceXY::LaplaceXYM/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/invert_laplace.hxx:208: warning: The following parameters of Laplacian::create(Options *opt=nullptr, const CELL_LOC loc=CELL_CENTRE, Mesh *mesh_in=nullptr) are not documented:
  parameter 'loc'
  parameter 'mesh_in'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/invert_laplace.cxx:380: warning: argument 'avec' from the argument list of Laplacian::tridagMatrix has multiple @param documentation sections
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/invert_laplace.cxx:380: warning: argument 'bvec' from the argument list of Laplacian::tridagMatrix has multiple @param documentation sections
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/invert_laplace.cxx:380: warning: argument 'cvec' from the argument list of Laplacian::tridagMatrix has multiple @param documentation sections
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/mesh.hxx:756: warning: argument 'v' of command @param is not found in the argument list of Mesh::indexVDDX(const T &vel, const T &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT", REGION region=RGN_NOBNDRY) const
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/mesh.hxx:756: warning: The following parameter of Mesh::indexVDDX(const T &vel, const T &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT", REGION region=RGN_NOBNDRY) const is not documented:
  parameter 'vel'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx:171: warning: The following parameter of NcFormat::getAttribute(const std::string &varname, const std::string &attrname, std::string &text) is not documented:
  parameter 'text'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx:187: warning: The following parameter of NcFormat::getAttribute(const std::string &varname, const std::string &attrname, int &value) is not documented:
  parameter 'value'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx:203: warning: The following parameter of NcFormat::getAttribute(const std::string &varname, const std::string &attrname, BoutReal &value) is not documented:
  parameter 'value'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx:171: warning: The following parameter of Ncxx4::getAttribute(const std::string &varname, const std::string &attrname, std::string &text) is not documented:
  parameter 'text'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx:187: warning: The following parameter of Ncxx4::getAttribute(const std::string &varname, const std::string &attrname, int &value) is not documented:
  parameter 'value'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/dataformat.hxx:203: warning: The following parameter of Ncxx4::getAttribute(const std::string &varname, const std::string &attrname, BoutReal &value) is not documented:
  parameter 'value'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/options.hxx:161: warning: argument 'parent' of command @param is not found in the argument list of Options::Options(Options *parent_instance, std::string full_name)
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/options.hxx:161: warning: argument 'sectionName' of command @param is not found in the argument list of Options::Options(Options *parent_instance, std::string full_name)
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/options.hxx:161: warning: The following parameters of Options::Options(Options *parent_instance, std::string full_name) are not documented:
  parameter 'parent_instance'
  parameter 'full_name'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/physicsmodel.hxx:229: warning: The following parameter of PhysicsModel::bout_solve(Field2D &var, const char *name, const std::string &description="") is not documented:
  parameter 'description'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/paralleltransform.hxx:259: warning: The following parameter of ShiftedMetric::shiftZ(const Field3D &f, const Field2D &zangle, const std::string &region="RGN_NOX") const is not documented:
  parameter 'region'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/paralleltransform.hxx:275: warning: The following parameter of ShiftedMetric::shiftZ(const Field3D &f, const Tensor< dcomplex > &phs, const YDirectionType y_direction_out, const std::string &region="RGN_NOX") const is not documented:
  parameter 'region'
onitor
Generating XML output for class LaplaceXZ
Generating XML output for class LaplaceXZcyclic
Generating XML output for class LaplaceXZpetsc
Generating XML output for class Laplacian
Generating XML output for class LegacyModel
Generating XML output for class ExpressionParser::LexInfo
Generating XML output for class Literal
Generating XML output for class LoadVarOp
Generating XML output for class pvode::machenv_type
Generating XML output for class Matrix
Generating XML output for class FV::MC
Generating XML output for class Mesh
Generating XML output for class MeshFactory
Generating XML output for class metaData
Generating XML output for class FV::MinMod
Generating XML output for class Monitor
Generating XML output for class MonotonicHermiteSpline
Generating XML output for class MsgStack
Generating XML output for class MsgStackItem
Generating XML output for class Multigrid1DP
Generating XML output for class Multigrid2DPf1D
Generating XML output for class MultigridAlg
Generating XML output for class MultigridSerial
Generating XML output for class multiostream
Generating XML output for class multioutbuf
Generating XML output for class multioutbuf_init
Generating XML output for class Multiply
Generating XML output for class NcFormat
Generating XML output for class Ncxx4
Generating XML output for class pvode::nvec_type
Generating XML output for class OptionINI
Generating XML output for class OptionParser
Generating XML output for class Options
Generating XML output for class bout::experimental::OptionsNetCDF
Generating XML output for class OptionsReader
Generating XML output for class Options::OptionValue
Generating XML output for class Output
Generating XML output for class ShiftedMetric::ParallelSlicePhase
Generating XML output for class ParallelTransform
Generating XML output for class ParallelTransformIdentity
Generating XML output for class ParDerivFactory
Generating XML output for class ParseException
Generating XML output for class LaplacePDD::PDD_data
Generating XML output for class PetscLib
Generating XML output for class PetscSolver
Generating XML output for class PhysicsModel
Generating XML output for class PhysicsModel::PhysicsModelMonitor
Generating XML output for class PncFormat
Generating XML output for class Power
Generating XML output for class PowerSolver
Generating XML output for class produceCombinations
Generating XML output for class PromoteType
Generating XML output for class pvode::pvbbddata_type
Generating XML output for class PvodeSolver
Generating XML output for class RangeIterator
Generating XML output for class BoundaryRegionPar::RealPoint
Generating XML output for class Region
Generating XML output for class RegionStats
Generating XML output for class RegisterInFactory
Generating XML output for class RegisterInFactory< Solver, DerivedType >
Generating XML output for class registerMethod
Generating XML output for class RK3SSP
Generating XML output for class RK4SIMPLEScheme
Generating XML output for class RK4Solver
Generating XML output for class RKF34Scheme
Generating XML output for class RKF45Scheme
Generating XML output for class RKGenericSolver
Generating XML output for class RKScheme
Generating XML output for class RKSchemeFactory
Generating XML output for class RunMetrics
Generating XML output for class SaveDerivsOp
Generating XML output for class SaveVarOp
Generating XML output for class Set
Generating XML output for class uuids::detail::sha1
Generating XML output for class ShiftedMetric
Generating XML output for class SlepcLib
Generating XML output for class SlepcSolver
Generating XML output for class snes_info
Generating XML output for class SNESSolver
Generating XML output for class Solver
Generating XML output for class SolverFactory
Generating XML output for class SpecificInd
Generating XML output for class pvode::SpgmrMemRec
Generating XML output for class SplitFluxDerivativeType
Generating XML output for class SplitRK
Generating XML output for class LaplaceSPT::SPT_data
Generating XML output for class bout::utils::details::StaticCastOrThrow
Generating XML output for class stencil
G/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/surfaceiter.hxx:35: warning: The following parameter of SurfaceIter::SurfaceIter(Mesh *mesh, bool include_guards=false) is not documented:
  parameter 'include_guards'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/index_derivs_interface.hxx:276: warning: argument 'v' of command @param is not found in the argument list of bout::derivatives::index::VDDX(const T &vel, const T &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT", const std::string &region="RGN_NOBNDRY")
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/index_derivs_interface.hxx:276: warning: The following parameter of bout::derivatives::index::VDDX(const T &vel, const T &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT", const std::string &region="RGN_NOBNDRY") is not documented:
  parameter 'vel'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/sys/variant.hxx:81: warning: Found unknown command '\v'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/sys/variant.hxx:118: warning: Found unknown command '\v'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/bout_enum_class.hxx:68: warning: Unsupported xml/html tag <enum> found
enerating XML output for class FV::Stencil1D
Generating XML output for class Subtract
Generating XML output for class SurfaceIter
Generating XML output for class Tensor
Generating XML output for class Timer
Generating XML output for class Timer::timer_info
Generating XML output for class bout::utils::details::ToString
Generating XML output for class TypeContainer
Generating XML output for class Uncopyable
Generating XML output for class FV::Upwind
Generating XML output for class uuids::uuid
Generating XML output for class uuids::uuid_name_generator
Generating XML output for class uuids::uuid_time_generator
Generating XML output for class Datafile::VarStr
Generating XML output for class Solver::VarStr
Generating XML output for class Vector2D
Generating XML output for class Vector3D
Generating XML output for class LaplaceXZpetsc::YSlice
Generating XML output for namespace @110
Generating XML output for namespace @111
Generating XML output for namespace @125
Generating XML output for namespace @178
Generating XML output for namespace @179
Generating XML output for namespace @180
Generating XML output for namespace @192
Generating XML output for namespace @207
Generating XML output for namespace @208
Generating XML output for namespace @210
Generating XML output for namespace @212
Generating XML output for namespace @214
Generating XML output for namespace @216
Generating XML output for namespace @218
Generating XML output for namespace @220
Generating XML output for namespace @222
Generating XML output for namespace @224
Generating XML output for namespace @226
Generating XML output for namespace @228
Generating XML output for namespace @230
Generating XML output for namespace @240
Generating XML output for namespace @245
Generating XML output for namespace @247
Generating XML output for namespace @249
Generating XML output for namespace @252
Generating XML output for namespace @256
Generating XML output for namespace @258
Generating XML output for namespace @262
Generating XML output for namespace @5
Generating XML output for namespace bout
Generating XML output for namespace bout::derivatives
Generating XML output for namespace bout::derivatives::index
Generating XML output for namespace bout::experimental
Generating XML output for namespace bout::fft
Generating XML output for namespace bout::globals
Generating XML output for namespace bout::inversion
Generating XML output for namespace bout::utils
Generating XML output for namespace bout::utils::details
Generating XML output for namespace FV
Generating XML output for namespace gen_fieldops
Generating XML output for namespace netCDF
Generating XML output for namespace pvode
Generating XML output for namespace SI
Generating XML output for namespace std
Generating XML output for namespace uuids
Generating XML output for namespace uuids::detail
Generating XML output for file boundary_factory.hxx
Generating XML output for file boundary_op.hxx
Generating XML output for file boundary_region.hxx
Generating XML output for file boundary_standard.hxx
Generating XML output for file bout.hxx
Generating XML output for file array.hxx
Generating XML output for file assert.hxx
Generating XML output for file bout_enum_class.hxx
Generating XML output for file constants.hxx
Generating XML output for file coordinates.hxx
Generating XML output for file deprecated.hxx
Generating XML output for file deriv_store.hxx
Generating XML output for file expr.hxx
Generating XML output for file field_visitor.hxx
Generating XML output for file fieldgroup.hxx
Generating XML output for file format.hxx
Generating XML output for file fv_ops.hxx
Generating XML output for file generic_factory.hxx
Generating XML output for file globalfield.hxx
Generating XML output for file griddata.hxx
Generating XML output for file index_derivs.hxx
Generating XML output for file index_derivs_interface.hxx
Generating XML output for file laplacexy.hxx
Generating XML output for file laplacexz.hxx
Generating XML output for file invertable_operator.hxx
Generating XML output for file macro_for_each.hxx
Generating XML output for file/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/difops.hxx:198: warning: The following parameter of Grad2_par2(const Field2D &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT") is not documented:
  parameter 'method'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/difops.hxx:290: warning: The following parameter of Div_par_K_Grad_par(BoutReal kY, const Field2D &f, CELL_LOC outloc=CELL_DEFAULT) is not documented:
  parameter 'outloc'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/gyro_average.hxx:52: warning: argument 'flags' of command @param is not found in the argument list of gyroPade0(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags)
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/gyro_average.hxx:52: warning: The following parameters of gyroPade0(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) are not documented:
  parameter 'inner_boundary_flags'
  parameter 'outer_boundary_flags'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/gyro_average.hxx:84: warning: argument 'flags' of command @param is not found in the argument list of gyroPade1(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags)
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/gyro_average.hxx:84: warning: The following parameters of gyroPade1(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) are not documented:
  parameter 'inner_boundary_flags'
  parameter 'outer_boundary_flags'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/gyro_average.hxx:120: warning: argument 'flags' of command @param is not found in the argument list of gyroPade2(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags)
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/gyro_average.hxx:120: warning: The following parameters of gyroPade2(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) are not documented:
  parameter 'inner_boundary_flags'
  parameter 'outer_boundary_flags'
 mesh.hxx
Generating XML output for file monitor.hxx
Generating XML output for file openmpwrap.hxx
Generating XML output for file paralleltransform.hxx
Generating XML output for file petsclib.hxx
Generating XML output for file physicsmodel.hxx
Generating XML output for file region.hxx
Generating XML output for file rkscheme.hxx
Generating XML output for file rvec.hxx
Generating XML output for file scorepwrapper.hxx
Generating XML output for file slepclib.hxx
Generating XML output for file snb.hxx
Generating XML output for file solver.hxx
Generating XML output for file solverfactory.hxx
Generating XML output for file surfaceiter.hxx
Generating XML output for file expressionparser.hxx
Generating XML output for file gettext.hxx
Generating XML output for file range.hxx
Generating XML output for file timer.hxx
Generating XML output for file type_name.hxx
Generating XML output for file uncopyable.hxx
Generating XML output for file uuid.h
Generating XML output for file variant.hxx
Generating XML output for file template_combinations.hxx
Generating XML output for file traits.hxx
Generating XML output for file bout_types.hxx
Generating XML output for file boutcomm.hxx
Generating XML output for file boutexception.hxx
Generating XML output for file boutmain.hxx
Generating XML output for file cyclic_reduction.hxx
Generating XML output for file datafile.hxx
Generating XML output for file dataformat.hxx
Generating XML output for file dcomplex.hxx
Generating XML output for file derivs.hxx
Generating XML output for file difops.hxx
Generating XML output for file fft.hxx
Generating XML output for file field.hxx
Generating XML output for file field2d.hxx
Generating XML output for file field3d.hxx
Generating XML output for file field_data.hxx
Generating XML output for file field_factory.hxx
Generating XML output for file fieldperp.hxx
Generating XML output for file globals.hxx
Generating XML output for file gyro_average.hxx
Generating XML output for file initialprofiles.hxx
Generating XML output for file interpolation.hxx
Generating XML output for file interpolation_factory.hxx
Generating XML output for file invert_laplace.hxx
Generating XML output for file invert_parderiv.hxx
Generating XML output for file lapack_routines.hxx
Generating XML output for file mask.hxx
Generating XML output for file msg_stack.hxx
Generating XML output for file multiostream.hxx
Generating XML output for file options.hxx
Generating XML output for file options_netcdf.hxx
Generating XML output for file optionsreader.hxx
Generating XML output for file output.hxx
Generating XML output for file parallel_boundary_op.hxx
Generating XML output for file parallel_boundary_region.hxx
Generating XML output for file band.h
Generating XML output for file cvdiag.h
Generating XML output for file cvode.h
Generating XML output for file cvspgmr.h
Generating XML output for file iterativ.h
Generating XML output for file llnlmath.h
Generating XML output for file llnltyps.h
Generating XML output for file nvector.h
Generating XML output for file pvbbdpre.h
Generating XML output for file smalldense.h
Generating XML output for file spgmr.h
Generating XML output for file vector.h
Generating XML output for file smoothing.hxx
Generating XML output for file sourcex.hxx
Generating XML output for file stencils.hxx
Generating XML output for file unused.hxx
Generating XML output for file utils.hxx
Generating XML output for file vecops.hxx
Generating XML output for file vector2d.hxx
Generating XML output for file vector3d.hxx
Generating XML output for file where.hxx
Generating XML output for file bout++-time.cxx
Generating XML output for file bout++-time.hxx
Generating XML output for file bout++.cxx
Generating XML output for file field.cxx
Generating XML output for file field2d.cxx
Generating XML output for file field3d.cxx
Generating XML output for file field_data.cxx
Generating XML output for file field_factory.cxx
Generating XML output for file fieldgenerators.cxx
Generating XML output for file fieldgenerators.hxx
Generating XML output for file fieldgroup.cxx
Generating XML output for file fie/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/difops.hxx:198: warning: The following parameter of Grad2_par2(const Field2D &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT") is not documented:
  parameter 'method'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/difops.hxx:290: warning: The following parameter of Div_par_K_Grad_par(BoutReal kY, const Field2D &f, CELL_LOC outloc=CELL_DEFAULT) is not documented:
  parameter 'outloc'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/gyro_average.hxx:52: warning: argument 'flags' of command @param is not found in the argument list of gyroPade0(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags)
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/gyro_average.hxx:52: warning: The following parameters of gyroPade0(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) are not documented:
  parameter 'inner_boundary_flags'
  parameter 'outer_boundary_flags'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/gyro_average.hxx:84: warning: argument 'flags' of command @param is not found in the argument list of gyroPade1(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags)
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/gyro_average.hxx:84: warning: The following parameters of gyroPade1(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) are not documented:
  parameter 'inner_boundary_flags'
  parameter 'outer_boundary_flags'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/gyro_average.hxx:120: warning: argument 'flags' of command @param is not found in the argument list of gyroPade2(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags)
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/gyro_average.hxx:120: warning: The following parameters of gyroPade2(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) are not documented:
  parameter 'inner_boundary_flags'
  parameter 'outer_boundary_flags'
ldperp.cxx
Generating XML output for file gen_fieldops.py
Generating XML output for file generated_fieldops.cxx
Generating XML output for file globalfield.cxx
Generating XML output for file initialprofiles.cxx
Generating XML output for file vecops.cxx
Generating XML output for file vector2d.cxx
Generating XML output for file vector3d.cxx
Generating XML output for file where.cxx
Generating XML output for file datafile.cxx
Generating XML output for file dataformat.cxx
Generating XML output for file formatfactory.cxx
Generating XML output for file formatfactory.hxx
Generating XML output for file emptyformat.hxx
Generating XML output for file h5_format.cxx
Generating XML output for file h5_format.hxx
Generating XML output for file nc_format.cxx
Generating XML output for file nc_format.hxx
Generating XML output for file ncxx4.cxx
Generating XML output for file ncxx4.hxx
Generating XML output for file pnetcdf.cxx
Generating XML output for file pnetcdf.hxx
Generating XML output for file fft_fftw.cxx
Generating XML output for file lapack_routines.cxx
Generating XML output for file cyclic_laplace.cxx
Generating XML output for file cyclic_laplace.hxx
Generating XML output for file multigrid_alg.cxx
Generating XML output for file multigrid_laplace.cxx
Generating XML output for file multigrid_laplace.hxx
Generating XML output for file multigrid_solver.cxx
Generating XML output for file mumps_laplace.cxx
Generating XML output for file mumps_laplace.hxx
Generating XML output for file naulin_laplace.cxx
Generating XML output for file naulin_laplace.hxx
Generating XML output for file pdd.cxx
Generating XML output for file pdd.hxx
Generating XML output for file petsc_laplace.cxx
Generating XML output for file petsc_laplace.hxx
Generating XML output for file serial_band.cxx
Generating XML output for file serial_band.hxx
Generating XML output for file serial_tri.cxx
Generating XML output for file serial_tri.hxx
Generating XML output for file shoot_laplace.cxx
Generating XML output for file shoot_laplace.hxx
Generating XML output for file spt.cxx
Generating XML output for file spt.hxx
Generating XML output for file invert_laplace.cxx
Generating XML output for file laplacefactory.cxx
Generating XML output for file laplacefactory.hxx
Generating XML output for file laplacexy.cxx
Generating XML output for file laplacexz-cyclic.cxx
Generating XML output for file laplacexz-cyclic.hxx
Generating XML output for file laplacexz-petsc.cxx
Generating XML output for file laplacexz-petsc.hxx
Generating XML output for file laplacexz.cxx
Generating XML output for file cyclic.cxx
Generating XML output for file cyclic.hxx
Generating XML output for file invert_parderiv.cxx
Generating XML output for file parderiv_factory.cxx
Generating XML output for file boundary_factory.cxx
Generating XML output for file boundary_region.cxx
Generating XML output for file boundary_standard.cxx
Generating XML output for file coordinates.cxx
Generating XML output for file gridfromfile.cxx
Generating XML output for file gridfromoptions.cxx
Generating XML output for file difops.cxx
Generating XML output for file fv_ops.cxx
Generating XML output for file boutmesh.cxx
Generating XML output for file boutmesh.hxx
Generating XML output for file index_derivs.cxx
Generating XML output for file interpolation.cxx
Generating XML output for file bilinear.cxx
Generating XML output for file hermite_spline.cxx
Generating XML output for file interpolation_factory.cxx
Generating XML output for file lagrange_4pt.cxx
Generating XML output for file monotonic_hermite_spline.cxx
Generating XML output for file mesh.cxx
Generating XML output for file meshfactory.cxx
Generating XML output for file meshfactory.hxx
Generating XML output for file fci.cxx
Generating XML output for file fci.hxx
Generating XML output for file identity.cxx
Generating XML output for file shiftedmetric.cxx
Generating XML output for file parallel_boundary_op.cxx
Generating XML output for file parallel_boundary_region.cxx
Generating XML output for file surfaceiter.cxx
Generating XML output for file gyro_average.cxx
Generating XML output for file physicsmodel.cxx
Generating XML output for file smoothing.cxx
Generating XML output for file snb.cxx
Generating XML output for file sourcex.cxx
Generating XML output for file adams_bashforth.cxx
Generating XML output for file adams_bashforth.hxx
Generating XML output for file arkode.cxx
Generating XML output for file arkode.hxx
Generating XML output for file cvode.cxx
Generating XML output for file cvode.hxx
Generating XML output for file euler.cxx
Generating XML output for file euler.hxx
Generating XML output for file ida.cxx
Generating XML output for file ida.hxx
Generating XML output for file imex-bdf2.cxx
Generating XML output for file imex-bdf2.hxx
Generating XML output for file karniadakis.cxx
Generating XML output for file karniadakis.hxx
Generating XML output for file petsc.cxx
Generating XML output for file petsc.hxx
Generating XML output for file power.cxx
Generating XML output for file power.hxx
Generating XML output for file pvode.cxx
Generating XML output for file pvode.hxx
Generating XML output for file rk3-ssp.cxx
Generating XML output for file rk3-ssp.hxx
Generating XML output for file rk4.cxx
Generating XML output for file rk4.hxx
Generating XML output for file cashkarp.cxx
Generating XML output for file cashkarp.hxx
Generating XML output for file rk4simple.cxx
Generating XML output for file rk4simple.hxx
Generating XML output for file rkf34.cxx
Generating XML output for file rkf34.hxx
Generating XML output for file rkf45.cxx
Generating XML output for file rkf45.hxx
Generating XML output for file rkgeneric.cxx
Generating XML output for file rkgeneric.hxx
Generating XML output for file rkscheme.cxx
Generating XML output for file rkschemefactory.cxx
Generating XML output for file rkschemefactory.hxx
Generating XML output for file slepc.cxx
Generating XML output for file slepc.hxx
Generating XML output for file snes.cxx
Generating XML output for file snes.hxx
Generating XML output for file split-rk.cxx
Generating XML output for file split-rk.hxx
Generating XML output for file solver.cxx
Generating XML output for file solverfactory.cxx
Generating XML output for file bout_types.cxx
Generating XML output for file boutcomm.cxx
Generating XML output for file boutexception.cxx
Generating XML output for file derivs.cxx
Generating XML output for file expressionparser.cxx
Generating XML output for file msg_stack.cxx
Generating XML output for file options.cxx
Generating XML output for file optionparser.hxx
Generating XML output for file options_ini.cxx
Generating XML output for file options_ini.hxx
Generating XML output for file options_netcdf.cxx
Generating XML output for file optionsreader.cxx
Generating XML output for file output.cxx
Generating XML output for file petsclib.cxx
Generating XML output for file range.cxx
Generating XML output for file slepclib.cxx
Generating XML output for file timer.cxx
Generating XML output for file type_name.cxx
Generating XML output for file utils.cxx
Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/adams_bashforth/
Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/arkode/
Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/
Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/impls/bout/
Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/impls/cashkarp/
Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/cvode/
Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/cyclic/
Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplacexz/impls/cyclic/
Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/parderiv/impls/cyclic/
Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/data/
Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/euler/
Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/field/
Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/
Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/hdf5/
Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/ida/
Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/imex-bdf2/
Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/
Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/
Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplacexz/impls/
Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/parderiv/impls/
Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/impls/
Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/
Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/impls/
Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/
Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/interpolation/
Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/invert/
Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/
Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/karniadakis/
Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/
Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplacexy/
Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplacexz/
Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/
Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/multigrid/
Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/mumps/
Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/naulin/
Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf/
Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/netcdf4/
Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/options/
Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/mesh/parallel/
Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/parderiv/
Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/pdd/
Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/petsc/
Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplacexz/impls/petsc/
Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/petsc/
Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/physics/
Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/fileio/impls/pnetcdf/
Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/power/
Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/pvode/
Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/pvode/
Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rk3-ssp/
Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rk4/
Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/impls/rk4simple/
Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/impls/rkf34/
Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/impls/rkf45/
Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/rkgeneric/
Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/serial_band/
Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/serial_tri/
Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/shoot/
Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/slepc/
Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/snes/
Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/
Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/solver/impls/split-rk/
Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/invert/laplace/impls/spt/
Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/
Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/include/bout/sys/
Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/src/sys/
Generating XML output for the main page
Running plantuml with JAVA...
type lookup cache used 18676/65536 hits=185173 misses=19455
symbol lookup cache used 21545/65536 hits=227687 misses=21545
finished...
PYTHONPATH=../tools/pylib:$PYTHONPATH sphinx-build-3 -b html sphinx/ html/
Running Sphinx v5.3.0
WARNING: Invalid configuration value found: 'language = None'. Update your configuration to a valid language code. Falling back to 'en' (English).
breathe module not installed
recommonmark module not installed
making output directory... done
building [mo]: targets for 0 po files that are out of date
building [html]: targets for 41 source files that are out of date
updating environment: [new config] 41 added, 0 changed, 0 removed
reading sources... [  2%] _apidoc/boutdata
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No mlab available
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/usr/lib/python3.11/site-packages/boutdata/collect.py:docstring of boutdata.collect:1: WARNING: duplicate object description of boutdata.collect, other instance in _apidoc/boutdata, use :noindex: for one of them
WARNING: autodoc: failed to import module 'mayavi2' from module 'boutdata'; the following exception was raised:
No module named 'enthought'
/usr/lib/python3.11/site-packages/boutdata/__init__.py:docstring of boutdata:1: WARNING: duplicate object description of boutdata, other instance in _apidoc/boutdata, use :noindex: for one of them
/usr/lib/python3.11/site-packages/boutdata/__init__.py:docstring of boutdata.collect.attributes:1: WARNING: duplicate object description of boutdata.attributes, other instance in _apidoc/boutdata, use :noindex: for one of them
/usr/lib/python3.11/site-packages/boutdata/__init__.py:docstring of boutdata.collect.collect:1: WARNING: duplicate object description of boutdata.collect, other instance in _apidoc/boutdata, use :noindex: for one of them
/usr/lib/python3.11/site-packages/boutdata/restart.py:docstring of boutdata.restart.normal:55: WARNING: Footnote [1] is not referenced.
WARNING: autodoc: failed to import module 'analyse_equil_2' from module 'boututils'; the following exception was raised:
No module named 'crosslines'
WARNING: autodoc: failed to import module 'anim' from module 'boututils'; the following exception was raised:
No module named 'tvtk'
WARNING: autodoc: failed to import module 'boutgrid' from module 'boututils'; the following exception was raised:
No module named 'tvtk'
/usr/lib/python3.11/site-packages/boututils/calculus.py:docstring of boututils.calculus.deriv2D:14: ERROR: Unexpected indentation.
WARNING: autodoc: failed to import module 'contour' from module 'boututils'; the following exception was raised:
No module named 'boututils.contour'
WARNING: autodoc: failed to import module 'crosslines' from module 'boututils'; the following exception was raised:
No module named 'past'
WARNING: autodoc: failed to import module 'efit_analyzer' from module 'boututils'; the following exception was raised:
No module named 'past'
WARNING: autodoc: failed to import module 'fft_deriv' from module 'boututils'; the following exception was raised:
No module named 'past'
WARNING: autodoc: failed to import module 'int_func' from module 'boututils'; the following exception was raised:
No module named 'past'
WARNING: autodoc: failed to import module 'mode_structure' from module 'boututils'; the following exception was raised:
No module named 'past'
WARNING: autodoc: failed to import module 'moment_xyzt' from module 'boututils'; the following exception was raised:
No module named 'past'
WARNING: autodoc: failed to import module 'plotpolslice' from module 'boututils'; the following exception was raised:
No module named 'past'
WARNING: autodoc: failed to import module 'radial_grid' from module 'boututils'; the following exception was raised:
No module named 'past'
WARNING: autodoc: failed to import module 'surface_average' from module 'boututils'; the following exception was raised:
No module named 'past'
WARNING: autodoc: failed to import module 'volume_integral' from module 'boututils'; the following exception was raised:
No module named 'past'
/usr/lib/python3.11/site-packages/boututils/__init__.py:docstring of boututils:1: WARNING: duplicate object description of boututils, other instance in _apidoc/boututils, use :noindex: for one of them
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tools/pylib/zoidberg/field.py:docstring of zoidberg.field.MagneticField.attributes:1: WARNING: duplicate object description of zoidberg.field.MagneticField.attributes, other instance in _apidoc/zoidberg, use :noindex: for one of them
looking for now-outdated files... /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tools/pylib/zoidberg/field.py:docstring of zoidberg.field.MagneticField.boundary:1: WARNING: duplicate object description of zoidberg.field.MagneticField.boundary, other instance in _apidoc/zoidberg, use :noindex: for one of them
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tools/pylib/zoidberg/__init__.py:docstring of zoidberg:1: WARNING: duplicate object description of zoidberg, other instance in _apidoc/zoidberg, use :noindex: for one of them
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tools/pylib/zoidberg/__init__.py:docstring of zoidberg.zoidberg.make_maps:1: WARNING: duplicate object description of zoidberg.make_maps, other instance in _apidoc/zoidberg, use :noindex: for one of them
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tools/pylib/zoidberg/__init__.py:docstring of zoidberg.zoidberg.write_maps:1: WARNING: duplicate object description of zoidberg.write_maps, other instance in _apidoc/zoidberg, use :noindex: for one of them
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/api_reference.rst:4: WARNING: toctree glob pattern '_breathe_autogen/*' didn't match any documents
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/data_types.rst:75: WARNING: Definition list ends without a blank line; unexpected unindent.
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/user_docs/bout_options.rst:533: ERROR: Unexpected indentation.
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/user_docs/installing.rst:416: ERROR: Unexpected indentation.
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/user_docs/installing.rst:417: WARNING: Block quote ends without a blank line; unexpected unindent.
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/user_docs/nonlocal.rst:119: WARNING: malformed hyperlink target.
/usr/lib/python3.11/site-packages/boututils/__init__.py:docstring of boututils:1: WARNING: duplicate object description of boututils, other instance in _apidoc/boututils, use :noindex: for one of them
/usr/lib/python3.11/site-packages/boutdata/__init__.py:docstring of boutdata:1: WARNING: duplicate object description of boutdata, other instance in _apidoc/boutdata, use :noindex: for one of them
/usr/lib/python3.11/site-packages/boutdata/__init__.py:docstring of boutdata.collect.attributes:1: WARNING: duplicate object description of boutdata.attributes, other instance in _apidoc/boutdata, use :noindex: for one of them
/usr/lib/python3.11/site-packages/boutdata/__init__.py:docstring of boutdata.collect.collect:1: WARNING: duplicate object description of boutdata.collect, other instance in _apidoc/boutdata, use :noindex: for one of them
WARNING: autodoc: failed to import module 'boutcore'; the following exception was raised:
/usr/lib64/mpich/lib/libpetsc.so.3.17: undefined symbol: H5Pset_dxpl_mpio
WARNING: autodoc: failed to import module 'boutcore'; the following exception was raised:
/usr/lib64/mpich/lib/libpetsc.so.3.17: undefined symbol: H5Pset_dxpl_mpio
WARNING: autodoc: failed to import module 'boutcore'; the following exception was raised:
/usr/lib64/mpich/lib/libpetsc.so.3.17: undefined symbol: H5Pset_dxpl_mpio
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/user_docs/running_bout.rst:445: WARNING: Literal block expected; none found.
none found
pickling environment... done
checking consistency... done
preparing documents... done
writing output... [  2%] _apidoc/boutdata
writing output... [  4%] _apidoc/boututils
writing output... [  7%] _apidoc/zoidberg
writing output... [  9%] api_reference
writing output... [ 12%] developer_docs/code_layout
writing output... [ 14%] developer_docs/contributing
writing output... [ 17%] developer_docs/data_types
writing output... [ 19%] developer_docs/file_io
writing output... [ 21%] developer_docs/git_basics
writing output... [ 24%] developer_docs/mesh
writing output... [ 26%] developer_docs/natural_language
writing output... [ 29%] developer_docs/performance_profiling
writing output... [ 31%] index
writing output... [ 34%] user_docs/BOUT_Gradperp_op
writing output... [ 36%] user_docs/advanced_install
writing output... [ 39%] user_docs/algebraic_operators
writing output... [ 41%] user_docs/boundary_options
writing output... [ 43%] user_docs/bout_functions_for_physics
writing output... [ 46%] user_docs/bout_options
writing output... [ 48%] user_docs/coordinates
writing output... [ 51%] user_docs/differential_operators
writing output... [ 53%] user_docs/eigenvalue_solver
writing output... [ 56%] user_docs/input_grids
writing output... [ 58%] user_docs/installing
writing output... [ 60%] user_docs/introduction
writing output... [ 63%] user_docs/invertable_operator
writing output... [ 65%] user_docs/laplacian
writing output... [ 68%] user_docs/makefiles
writing output... [ 70%] user_docs/nonlocal
writing output... [ 73%] user_docs/output_and_post
writing output... [ 75%] user_docs/parallel-transforms
writing output... [ 78%] user_docs/petsc
writing output... [ 80%] user_docs/physics_models
writing output... [ 82%] user_docs/preconditioning
writing output... [ 85%] user_docs/python
writing output... [ 87%] user_docs/python_boutcore
writing output... [ 90%] user_docs/running_bout
writing output... [ 92%] user_docs/staggered_grids
writing output... [ 95%] user_docs/testing
writing output... [ 97%] user_docs/time_integration
writing output... [100%] user_docs/variable_init
/usr/lib/python3.11/site-packages/boutdata/restart.py:docstring of boutdata.restart.addnoise:1: WARNING: undefined label: 'random-quick-start'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:81: WARNING: unknown document: '../_breathe_autogen/file/bout_09_09_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:87: WARNING: unknown document: '../_breathe_autogen/file/field2d_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:93: WARNING: unknown document: '../_breathe_autogen/file/field3d_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:100: WARNING: unknown document: '../_breathe_autogen/file/field__data_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:105: WARNING: unknown document: '../_breathe_autogen/file/fieldperp_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:112: WARNING: unknown document: '../_breathe_autogen/file/initialprofiles_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:117: WARNING: unknown document: '../_breathe_autogen/file/vecops_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:117: WARNING: unknown document: '../_breathe_autogen/file/difops_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:124: WARNING: unknown document: '../_breathe_autogen/file/vector2d_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:129: WARNING: unknown document: '../_breathe_autogen/file/vector3d_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:133: WARNING: unknown document: '../_breathe_autogen/file/where_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:139: WARNING: unknown document: '../_breathe_autogen/file/datafile_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:145: WARNING: unknown document: '../_breathe_autogen/file/formatfactory_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:147: WARNING: unknown document: '../_breathe_autogen/file/formatfactory_8hxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:151: WARNING: unknown document: '../_breathe_autogen/file/emptyformat_8hxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:155: WARNING: unknown document: '../_breathe_autogen/file/h5__format_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:158: WARNING: unknown document: '../_breathe_autogen/file/h5__format_8hxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:162: WARNING: unknown document: '../_breathe_autogen/file/nc__format_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:165: WARNING: unknown document: '../_breathe_autogen/file/nc__format_8hxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:169: WARNING: unknown document: '../_breathe_autogen/file/ncxx4_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:173: WARNING: unknown document: '../_breathe_autogen/file/ncxx4_8hxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:177: WARNING: unknown document: '../_breathe_autogen/file/pnetcdf_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:180: WARNING: unknown document: '../_breathe_autogen/file/pnetcdf_8hxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:184: WARNING: unknown document: '../_breathe_autogen/file/fft__fftw_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:184: WARNING: unknown document: '../_breathe_autogen/file/fft_8hxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:193: WARNING: unknown document: '../_breathe_autogen/file/invert__laplace_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:195: WARNING: unknown document: '../_breathe_autogen/file/laplacefactory_8hxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:197: WARNING: unknown document: '../_breathe_autogen/file/laplacefactory_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:203: WARNING: unknown document: '../_breathe_autogen/file/serial__tri_8hxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:205: WARNING: unknown document: '../_breathe_autogen/file/serial__tri_8cxx'
generating indices... /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:209: WARNING: unknown document: '../_breathe_autogen/file/serial__band_8hxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:211: WARNING: unknown document: '../_breathe_autogen/file/serial__band_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:215: WARNING: unknown document: '../_breathe_autogen/file/spt_8hxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:217: WARNING: unknown document: '../_breathe_autogen/file/spt_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:221: WARNING: unknown document: '../_breathe_autogen/file/pdd_8hxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:223: WARNING: unknown document: '../_breathe_autogen/file/pdd_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:228: WARNING: unknown document: '../_breathe_autogen/file/invert__parderiv_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:232: WARNING: unknown document: '../_breathe_autogen/file/parderiv__factory_8hxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:234: WARNING: unknown document: '../_breathe_autogen/file/parderiv__factory_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:240: WARNING: unknown document: '../_breathe_autogen/file/serial_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:242: WARNING: unknown document: '../_breathe_autogen/file/serial_8hxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:246: WARNING: unknown document: '../_breathe_autogen/file/cyclic_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:248: WARNING: unknown document: '../_breathe_autogen/file/cyclic_8hxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:252: WARNING: unknown document: '../_breathe_autogen/file/lapack__routines_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:256: WARNING: unknown document: '../_breathe_autogen/file/boundary__factory_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:260: WARNING: unknown document: '../_breathe_autogen/file/boundary__region_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:265: WARNING: unknown document: '../_breathe_autogen/file/boundary__standard_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:269: WARNING: unknown document: '../_breathe_autogen/file/difops_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:269: WARNING: unknown document: '../_breathe_autogen/file/derivs_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:274: WARNING: unknown document: '../_breathe_autogen/file/interpolation_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:277: WARNING: unknown document: '../_breathe_autogen/file/mesh_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:285: WARNING: unknown document: '../_breathe_autogen/file/boutmesh_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:289: WARNING: unknown document: '../_breathe_autogen/file/boutmesh_8hxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:294: WARNING: unknown document: '../_breathe_autogen/file/gyro__average_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:296: WARNING: unknown document: '../_breathe_autogen/file/smoothing_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:299: WARNING: unknown document: '../_breathe_autogen/file/sourcex_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:305: WARNING: unknown document: '../_breathe_autogen/file/solver_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:308: WARNING: unknown document: '../_breathe_autogen/file/solverfactory_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:311: WARNING: unknown document: '../_breathe_autogen/file/solverfactory_8hxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:317: WARNING: unknown document: '../_breathe_autogen/file/cvode_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:321: WARNING: unknown document: '../_breathe_autogen/file/cvode_8hxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:325: WARNING: unknown document: '../_breathe_autogen/file/ida_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:329: WARNING: unknown document: '../_breathe_autogen/file/ida_8hxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:333: WARNING: unknown document: '../_breathe_autogen/file/petsc_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:336: WARNING: unknown document: '../_breathe_autogen/file/petsc_8hxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:340: WARNING: unknown document: '../_breathe_autogen/file/pvode_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:344: WARNING: unknown document: '../_breathe_autogen/file/pvode_8hxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:348: WARNING: unknown document: '../_breathe_autogen/file/boutcomm_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:350: WARNING: unknown document: '../_breathe_autogen/file/boutexception_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:353: WARNING: unknown document: '../_breathe_autogen/file/derivs_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:353: WARNING: unknown document: '../_breathe_autogen/file/difops_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:353: WARNING: undefined label: 'sec-derivatives'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:359: WARNING: unknown document: '../_breathe_autogen/file/msg__stack_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:366: WARNING: unknown document: '../_breathe_autogen/file/options_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:370: WARNING: unknown document: '../_breathe_autogen/file/optionsreader_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:372: WARNING: unknown document: '../_breathe_autogen/file/output_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:374: WARNING: unknown document: '../_breathe_autogen/file/range_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:378: WARNING: unknown document: '../_breathe_autogen/file/stencils_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:382: WARNING: unknown document: '../_breathe_autogen/file/timer_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:386: WARNING: unknown document: '../_breathe_autogen/file/utils_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:392: WARNING: unknown document: '../_breathe_autogen/file/optionparser_8hxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:394: WARNING: unknown document: '../_breathe_autogen/file/options__ini_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:396: WARNING: unknown document: '../_breathe_autogen/file/options__ini_8hxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/data_types.rst:385: WARNING: Unparseable C++ cross-reference: 'mesh:maxregionblocksize'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected end of definition. [error at 4]
    mesh:maxregionblocksize
    ----^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expecting "(" in parameters-and-qualifiers. [error at 4]
      mesh:maxregionblocksize
      ----^
  If the function has a return type:
    Error in declarator or parameters-and-qualifiers
    If pointer to member declarator:
      Invalid C++ declaration: Expected identifier in nested name. [error at 4]
        mesh:maxregionblocksize
        ----^
    If declarator-id:
      Invalid C++ declaration: Expected identifier in nested name. [error at 4]
        mesh:maxregionblocksize
        ----^
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/data_types.rst:385: WARNING: Unparseable C++ cross-reference: 'BOUT.inp'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected end of definition. [error at 4]
    BOUT.inp
    ----^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expecting "(" in parameters-and-qualifiers. [error at 4]
      BOUT.inp
      ----^
  If the function has a return type:
    Error in declarator or parameters-and-qualifiers
    If pointer to member declarator:
      Invalid C++ declaration: Expected identifier in nested name. [error at 4]
        BOUT.inp
        ----^
    If declarator-id:
      Invalid C++ declaration: Expected identifier in nested name. [error at 4]
        BOUT.inp
        ----^
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/file_io.rst:4: WARNING: unknown document: '../_breathe_autogen/file/griddata_8hxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/file_io.rst:4: WARNING: unknown document: '../_breathe_autogen/file/datafile_8hxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/file_io.rst:4: WARNING: unknown document: '../_breathe_autogen/file/datafile_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/file_io.rst:13: WARNING: unknown document: '../_breathe_autogen/file/dataformat_8hxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/file_io.rst:268: WARNING: Unparseable C++ cross-reference: 'restart.redistribute'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected end of definition. [error at 7]
    restart.redistribute
    -------^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expecting "(" in parameters-and-qualifiers. [error at 7]
      restart.redistribute
      -------^
  If the function has a return type:
    Error in declarator or parameters-and-qualifiers
    If pointer to member declarator:
      Invalid C++ declaration: Expected identifier in nested name. [error at 7]
        restart.redistribute
        -------^
    If declarator-id:
      Invalid C++ declaration: Expected identifier in nested name. [error at 7]
        restart.redistribute
        -------^
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/developer_docs/mesh.rst:31: WARNING: unknown document: '../_breathe_autogen/file/bout_09_09_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/user_docs/algebraic_operators.rst:8: WARNING: unknown document: '../_breathe_autogen/file/field2d_8hxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/user_docs/algebraic_operators.rst:8: WARNING: unknown document: '../_breathe_autogen/file/field3d_8hxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/user_docs/algebraic_operators.rst:8: WARNING: unknown document: '../_breathe_autogen/file/fieldperp_8hxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/user_docs/differential_operators.rst:182: WARNING: Unparseable C++ cross-reference: 'return\n0.5*(f.p - f.m);'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected identifier in nested name, got keyword: return [error at 6]
    return
  0.5*(f.p - f.m);
    ------^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expected identifier in nested name, got keyword: return [error at 6]
      return
    0.5*(f.p - f.m);
      ------^
  If the function has a return type:
    Invalid C++ declaration: Expected identifier in nested name, got keyword: return [error at 6]
      return
    0.5*(f.p - f.m);
      ------^
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/user_docs/differential_operators.rst:192: WARNING: Unparseable C++ cross-reference: '"C2"'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected identifier in nested name. [error at 0]
    "C2"
    ^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expected identifier in nested name. [error at 0]
      "C2"
      ^
  If the function has a return type:
    Invalid C++ declaration: Expected identifier in nested name. [error at 0]
      "C2"
      ^
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/user_docs/differential_operators.rst:196: WARNING: Unparseable C++ cross-reference: '1'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected identifier in nested name. [error at 0]
    1
    ^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expected identifier in nested name. [error at 0]
      1
      ^
  If the function has a return type:
    Invalid C++ declaration: Expected identifier in nested name. [error at 0]
      1
      ^
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/user_docs/differential_operators.rst:221: WARNING: Unparseable C++ cross-reference: 'REGISTER_DERIVATIVE(DDX_C2)()'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected end of definition. [error at 19]
    REGISTER_DERIVATIVE(DDX_C2)()
    -------------------^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Invalid C++ declaration: Expected end of definition or ;. [error at 27]
      REGISTER_DERIVATIVE(DDX_C2)()
      ---------------------------^
  If the function has a return type:
    Error in declarator
    If declarator-id with parameters-and-qualifiers:
      Invalid C++ declaration: Expected identifier in nested name. [error at 19]
        REGISTER_DERIVATIVE(DDX_C2)()
        -------------------^
    If parenthesis in noptr-declarator:
      Error in declarator or parameters-and-qualifiers
      If pointer to member declarator:
        Invalid C++ declaration: Expected '::' in pointer to member (function). [error at 26]
          REGISTER_DERIVATIVE(DDX_C2)()
          --------------------------^
      If declarator-id:
        Invalid C++ declaration: Expecting "(" in parameters-and-qualifiers. [error at 26]
          REGISTER_DERIVATIVE(DDX_C2)()
          --------------------------^
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/user_docs/differential_operators.rst:238: WARNING: Unparseable C++ cross-reference: '"C2"'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected identifier in nested name. [error at 0]
    "C2"
    ^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expected identifier in nested name. [error at 0]
      "C2"
      ^
  If the function has a return type:
    Invalid C++ declaration: Expected identifier in nested name. [error at 0]
      "C2"
      ^
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/user_docs/differential_operators.rst:530: WARNING: unknown document: '../_breathe_autogen/file/fv__ops_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/user_docs/differential_operators.rst:538: WARNING: unknown document: '../_breathe_autogen/file/fv__ops_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/user_docs/differential_operators.rst:278: WARNING: Could not lex literal_block as "cpp". Highlighting skipped.
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/user_docs/installing.rst:190: WARNING: Unparseable C++ cross-reference: 'export LC_CTYPE=C.utf8'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected identifier in nested name, got keyword: export [error at 6]
    export LC_CTYPE=C.utf8
    ------^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expected identifier in nested name, got keyword: export [error at 6]
      export LC_CTYPE=C.utf8
      ------^
  If the function has a return type:
    Invalid C++ declaration: Expected identifier in nested name, got keyword: export [error at 6]
      export LC_CTYPE=C.utf8
      ------^
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/user_docs/installing.rst:423: WARNING: Unparseable C++ cross-reference: '-DBOUT_IGNORE_CONDA_ENV=ON'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected identifier in nested name. [error at 0]
    -DBOUT_IGNORE_CONDA_ENV=ON
    ^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expected identifier in nested name. [error at 0]
      -DBOUT_IGNORE_CONDA_ENV=ON
      ^
  If the function has a return type:
    Invalid C++ declaration: Expected identifier in nested name. [error at 0]
      -DBOUT_IGNORE_CONDA_ENV=ON
      ^
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/user_docs/installing.rst:436: WARNING: Failed to create a cross reference. A title or caption not found: 'sec-install-bout'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/user_docs/invertable_operator.rst:30: WARNING: Unparseable C++ cross-reference: 'examples/invertable_operator'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected end of definition. [error at 8]
    examples/invertable_operator
    --------^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expecting "(" in parameters-and-qualifiers. [error at 8]
      examples/invertable_operator
      --------^
  If the function has a return type:
    Error in declarator or parameters-and-qualifiers
    If pointer to member declarator:
      Invalid C++ declaration: Expected identifier in nested name. [error at 8]
        examples/invertable_operator
        --------^
    If declarator-id:
      Invalid C++ declaration: Expected identifier in nested name. [error at 8]
        examples/invertable_operator
        --------^
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/user_docs/invertable_operator.rst:98: WARNING: Unparseable C++ cross-reference: '-invertable'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected identifier in nested name. [error at 0]
    -invertable
    ^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expected identifier in nested name. [error at 0]
      -invertable
      ^
  If the function has a return type:
    Invalid C++ declaration: Expected identifier in nested name. [error at 0]
      -invertable
      ^
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/user_docs/invertable_operator.rst:98: WARNING: Unparseable C++ cross-reference: '-ksp_type'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected identifier in nested name. [error at 0]
    -ksp_type
    ^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expected identifier in nested name. [error at 0]
      -ksp_type
      ^
  If the function has a return type:
    Invalid C++ declaration: Expected identifier in nested name. [error at 0]
      -ksp_type
      ^
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/user_docs/invertable_operator.rst:98: WARNING: Unparseable C++ cross-reference: '-invertable_ksp_type'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected identifier in nested name. [error at 0]
    -invertable_ksp_type
    ^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expected identifier in nested name. [error at 0]
      -invertable_ksp_type
      ^
  If the function has a return type:
    Invalid C++ declaration: Expected identifier in nested name. [error at 0]
      -invertable_ksp_type
      ^
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/user_docs/laplacian.rst:186: WARNING: unknown document: '../_breathe_autogen/file/invert__laplace_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/user_docs/nonlocal.rst:117: WARNING: undefined label: 'tab-snb-options'
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/user_docs/output_and_post.rst:659: WARNING: Unparseable C++ cross-reference: '"zzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzz"'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected identifier in nested name. [error at 0]
    "zzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzz"
    ^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expected identifier in nested name. [error at 0]
      "zzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzz"
      ^
  If the function has a return type:
    Invalid C++ declaration: Expected identifier in nested name. [error at 0]
      "zzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzz"
      ^
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/user_docs/output_and_post.rst:587: WARNING: Could not lex literal_block as "mathematica". Highlighting skipped.
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/user_docs/running_bout.rst:119: WARNING: Unparseable C++ cross-reference: 'https://xbout.readthedocs.io/en/latest'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected end of definition. [error at 5]
    https://xbout.readthedocs.io/en/latest
    -----^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expecting "(" in parameters-and-qualifiers. [error at 5]
      https://xbout.readthedocs.io/en/latest
      -----^
  If the function has a return type:
    Error in declarator or parameters-and-qualifiers
    If pointer to member declarator:
      Invalid C++ declaration: Expected identifier in nested name. [error at 5]
        https://xbout.readthedocs.io/en/latest
        -----^
    If declarator-id:
      Invalid C++ declaration: Expected identifier in nested name. [error at 5]
        https://xbout.readthedocs.io/en/latest
        -----^
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/user_docs/running_bout.rst:464: WARNING: Unparseable C++ cross-reference: 'https://en.wikipedia.org/wiki/Universally_unique_identifier'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected end of definition. [error at 5]
    https://en.wikipedia.org/wiki/Universally_unique_identifier
    -----^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expecting "(" in parameters-and-qualifiers. [error at 5]
      https://en.wikipedia.org/wiki/Universally_unique_identifier
      -----^
  If the function has a return type:
    Error in declarator or parameters-and-qualifiers
    If pointer to member declarator:
      Invalid C++ declaration: Expected identifier in nested name. [error at 5]
        https://en.wikipedia.org/wiki/Universally_unique_identifier
        -----^
    If declarator-id:
      Invalid C++ declaration: Expected identifier in nested name. [error at 5]
        https://en.wikipedia.org/wiki/Universally_unique_identifier
        -----^
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/user_docs/running_bout.rst:537: WARNING: Unparseable C++ cross-reference: 'https://xbout.readthedocs.io/en/latest'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected end of definition. [error at 5]
    https://xbout.readthedocs.io/en/latest
    -----^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expecting "(" in parameters-and-qualifiers. [error at 5]
      https://xbout.readthedocs.io/en/latest
      -----^
  If the function has a return type:
    Error in declarator or parameters-and-qualifiers
    If pointer to member declarator:
      Invalid C++ declaration: Expected identifier in nested name. [error at 5]
        https://xbout.readthedocs.io/en/latest
        -----^
    If declarator-id:
      Invalid C++ declaration: Expected identifier in nested name. [error at 5]
        https://xbout.readthedocs.io/en/latest
        -----^
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/user_docs/running_bout.rst:537: WARNING: Unparseable C++ cross-reference: 'https://xbout.readthedocs.io/en/latest/xbout.html#xbout.boutdataset.BoutDatasetAccessor.to_restart'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected end of definition. [error at 5]
    https://xbout.readthedocs.io/en/latest/xbout.html#xbout.boutdataset.BoutDatasetAccessor.to_restart
    -----^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expecting "(" in parameters-and-qualifiers. [error at 5]
      https://xbout.readthedocs.io/en/latest/xbout.html#xbout.boutdataset.BoutDatasetAccessor.to_restart
      -----^
  If the function has a return type:
    Error in declarator or parameters-and-qualifiers
    If pointer to member declarator:
      Invalid C++ declaration: Expected identifier in nested name. [error at 5]
        https://xbout.readthedocs.io/en/latest/xbout.html#xbout.boutdataset.BoutDatasetAccessor.to_restart
        -----^
    If declarator-id:
      Invalid C++ declaration: Expected identifier in nested name. [error at 5]
        https://xbout.readthedocs.io/en/latest/xbout.html#xbout.boutdataset.BoutDatasetAccessor.to_restart
        -----^
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/user_docs/time_integration.rst:366: WARNING: Unparseable C++ cross-reference: 'predictor = false'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected end of definition. [error at 10]
    predictor = false
    ----------^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expecting "(" in parameters-and-qualifiers. [error at 10]
      predictor = false
      ----------^
  If the function has a return type:
    Error in declarator or parameters-and-qualifiers
    If pointer to member declarator:
      Invalid C++ declaration: Expected identifier in nested name. [error at 10]
        predictor = false
        ----------^
    If declarator-id:
      Invalid C++ declaration: Expected identifier in nested name. [error at 10]
        predictor = false
        ----------^
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/sphinx/user_docs/time_integration.rst:960: WARNING: unknown document: '../_breathe_autogen/file/bout_09_09_8cxx'
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build succeeded, 162 warnings.
The HTML pages are in html.
Documentation available in file:///builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual/html/index.html
make: Leaving directory '/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/manual'
+ '[' mpich = mpich ']'
+ . /etc/profile.d/modules.sh
++ '[' -n /bin/sh ']'
++ '[' sh = sh ']'
++ shell=sh
++ '[' -f /usr/share/Modules/init/sh ']'
++ . /usr/share/Modules/init/sh
+++ unset _mlshdbg
+++ '[' 0 = 1 ']'
+++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD'
+++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD'
+++ unset _mlre _mlIFS
+++ '[' -n x ']'
+++ _mlIFS=' 	
'
+++ IFS=' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
++++ eval 'echo ${LD_LIBRARY_PATH+x}'
+++++ echo x
+++ '[' -n x ']'
++++ eval 'echo ${LD_LIBRARY_PATH}'
+++++ echo /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/lib
+++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/lib'\'' '
+++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH
++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}'
+++++ echo
+++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
++++ eval 'echo ${LD_PRELOAD+x}'
+++++ echo
+++ '[' -n '' ']'
+++ _mlrv=MODULES_RUNENV_LD_PRELOAD
++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}'
+++++ echo
+++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' '
+++ '[' -n '__MODULES_QUAR_LD_LIBRARY_PATH='\''/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']'
+++ _mlre='eval __MODULES_QUAR_LD_LIBRARY_PATH='\''/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 '
++++ eval '__MODULES_QUAR_LD_LIBRARY_PATH='\''/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/lib'\''' 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++++ __MODULES_QUAR_LD_LIBRARY_PATH=/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/lib
+++++ LD_LIBRARY_PATH=
+++++ LD_PRELOAD=
+++++ __MODULES_QUARANTINE_SET=1
+++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++ _mlcode='_module_raw() {
   eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")";
   _mlstatus=$?;
   return $_mlstatus;
};
module() {
   local _mlredir=0;
   if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then
      if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then
         _mlredir=0;
      elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then
         _mlredir=1;
      fi;
   fi;
   case " $@ " in
      *'\'' --no-redirect '\''*) _mlredir=0 ;;
      *'\'' --redirect '\''*) _mlredir=1 ;;
   esac;
   if [ $_mlredir -eq 0 ]; then
      _module_raw "$@";
   else
      _module_raw "$@" 2>&1;
   fi;
};
ml() { module ml "$@"; };
MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD;
unset __MODULES_AUTOINIT_INPROGRESS;
MODULESHOME=/usr/share/Modules; export MODULESHOME;
test 0;'
+++ _mlret=0
+++ '[' -n x ']'
+++ IFS=' 	
'
+++ unset _mlIFS
+++ unset _mlre _mlv _mlrv
+++ '[' 0 -eq 0 ']'
+++ eval '_module_raw() {
   eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")";
   _mlstatus=$?;
   return $_mlstatus;
};
module() {
   local _mlredir=0;
   if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then
      if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then
         _mlredir=0;
      elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then
         _mlredir=1;
      fi;
   fi;
   case " $@ " in
      *'\'' --no-redirect '\''*) _mlredir=0 ;;
      *'\'' --redirect '\''*) _mlredir=1 ;;
   esac;
   if [ $_mlredir -eq 0 ]; then
      _module_raw "$@";
   else
      _module_raw "$@" 2>&1;
   fi;
};
ml() { module ml "$@"; };
MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD;
unset __MODULES_AUTOINIT_INPROGRESS;
MODULESHOME=/usr/share/Modules; export MODULESHOME;
test 0;'
++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl
++++ export MODULES_CMD
++++ unset __MODULES_AUTOINIT_INPROGRESS
++++ MODULESHOME=/usr/share/Modules
++++ export MODULESHOME
++++ test 0
+++ '[' /bin/sh '!=' '' ']'
+++ export -f _module_raw
+++ export -f module
++++ type -t ml
+++ '[' function = function ']'
+++ export -f ml
+++ unset _mlcode _mlret
+++ '[' -n '' ']'
+ module unload mpi/mpich-x86_64
+ local _mlredir=0
+ '[' -n '' ']'
+ case " $@ " in
+ '[' 0 -eq 0 ']'
+ _module_raw unload mpi/mpich-x86_64
++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh unload mpi/mpich-x86_64
+ eval 'LD_LIBRARY_PATH=/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/lib; export LD_LIBRARY_PATH;
unset MPI_COMPILER;
MANPATH=/usr/share/man:; export MANPATH;
unset MPI_INCLUDE;
unset MPI_MAN;
unset MPI_PYTHON_SITEARCH;
unset _LMFILES_;
unset LOADEDMODULES;
PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH;
unset MPI_PYTHON3_SITEARCH;
unset MPI_FORTRAN_MOD_DIR;
unset MPI_HOME;
unset __MODULES_LMCONFLICT;
__MODULES_SHARE_MANPATH=:1; export __MODULES_SHARE_MANPATH;
unset MPI_SYSCONFIG;
unset MPI_SUFFIX;
__MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH;
unset MPI_PYTHON2_SITEARCH;
unset MPI_LIB;
PATH=/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH;
unset MPI_BIN;
test 0;'
++ LD_LIBRARY_PATH=/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/lib
++ export LD_LIBRARY_PATH
++ unset MPI_COMPILER
++ MANPATH=/usr/share/man:
~/build/BUILD/BOUT++-v4.4.2
~/build/BUILD/BOUT++-v4.4.2/build_openmpi ~/build/BUILD/BOUT++-v4.4.2
++ export MANPATH
++ unset MPI_INCLUDE
++ unset MPI_MAN
++ unset MPI_PYTHON_SITEARCH
++ unset _LMFILES_
++ unset LOADEDMODULES
++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig
++ export PKG_CONFIG_PATH
++ unset MPI_PYTHON3_SITEARCH
++ unset MPI_FORTRAN_MOD_DIR
++ unset MPI_HOME
++ unset __MODULES_LMCONFLICT
++ __MODULES_SHARE_MANPATH=:1
++ export __MODULES_SHARE_MANPATH
++ unset MPI_SYSCONFIG
++ unset MPI_SUFFIX
++ __MODULES_SHARE_PKG_CONFIG_PATH=:1
++ export __MODULES_SHARE_PKG_CONFIG_PATH
++ unset MPI_PYTHON2_SITEARCH
++ unset MPI_LIB
++ PATH=/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin
++ export PATH
++ unset MPI_BIN
++ test 0
+ _mlstatus=0
+ return 0
+ popd
+ for mpi in mpich openmpi
+ pushd build_openmpi
+ '[' openmpi = mpich ']'
+ '[' openmpi = openmpi ']'
+ . /etc/profile.d/modules.sh
++ '[' -n /bin/sh ']'
++ '[' sh = sh ']'
++ shell=sh
++ '[' -f /usr/share/Modules/init/sh ']'
++ . /usr/share/Modules/init/sh
+++ unset _mlshdbg
+++ '[' 0 = 1 ']'
+++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD'
+++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD'
+++ unset _mlre _mlIFS
+++ '[' -n x ']'
+++ _mlIFS=' 	
'
+++ IFS=' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
++++ eval 'echo ${LD_LIBRARY_PATH+x}'
+++++ echo x
+++ '[' -n x ']'
++++ eval 'echo ${LD_LIBRARY_PATH}'
+++++ echo /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/lib
+++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/lib'\'' '
+++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH
++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}'
+++++ echo
+++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
++++ eval 'echo ${LD_PRELOAD+x}'
+++++ echo
+++ '[' -n '' ']'
+++ _mlrv=MODULES_RUNENV_LD_PRELOAD
++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}'
+++++ echo
+++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' '
+++ '[' -n '__MODULES_QUAR_LD_LIBRARY_PATH='\''/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']'
+++ _mlre='eval __MODULES_QUAR_LD_LIBRARY_PATH='\''/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 '
++++ eval '__MODULES_QUAR_LD_LIBRARY_PATH='\''/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/lib'\''' 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++++ __MODULES_QUAR_LD_LIBRARY_PATH=/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/lib
+++++ LD_LIBRARY_PATH=
+++++ LD_PRELOAD=
+++++ __MODULES_QUARANTINE_SET=1
+++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++ _mlcode='_module_raw() {
   eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")";
   _mlstatus=$?;
   return $_mlstatus;
};
module() {
   local _mlredir=0;
   if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then
      if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then
         _mlredir=0;
      elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then
         _mlredir=1;
      fi;
   fi;
   case " $@ " in
      *'\'' --no-redirect '\''*) _mlredir=0 ;;
      *'\'' --redirect '\''*) _mlredir=1 ;;
   esac;
   if [ $_mlredir -eq 0 ]; then
      _module_raw "$@";
   else
      _module_raw "$@" 2>&1;
   fi;
};
ml() { module ml "$@"; };
MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD;
unset __MODULES_AUTOINIT_INPROGRESS;
MODULESHOME=/usr/share/Modules; export MODULESHOME;
LOADEDMODULES=; export LOADEDMODULES;
test 0;'
+++ _mlret=0
+++ '[' -n x ']'
+++ IFS=' 	
'
+++ unset _mlIFS
+++ unset _mlre _mlv _mlrv
+++ '[' 0 -eq 0 ']'
+++ eval '_module_raw() {
   eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")";
   _mlstatus=$?;
   return $_mlstatus;
};
module() {
   local _mlredir=0;
   if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then
      if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then
         _mlredir=0;
      elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then
         _mlredir=1;
      fi;
   fi;
   case " $@ " in
      *'\'' --no-redirect '\''*) _mlredir=0 ;;
      *'\'' --redirect '\''*) _mlredir=1 ;;
   esac;
   if [ $_mlredir -eq 0 ]; then
      _module_raw "$@";
   else
      _module_raw "$@" 2>&1;
   fi;
};
ml() { module ml "$@"; };
MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD;
unset __MODULES_AUTOINIT_INPROGRESS;
MODULESHOME=/usr/share/Modules; export MODULESHOME;
LOADEDMODULES=; export LOADEDMODULES;
test 0;'
++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl
++++ export MODULES_CMD
++++ unset __MODULES_AUTOINIT_INPROGRESS
++++ MODULESHOME=/usr/share/Modules
++++ export MODULESHOME
++++ LOADEDMODULES=
++++ export LOADEDMODULES
++++ test 0
+++ '[' /bin/sh '!=' '' ']'
+++ export -f _module_raw
+++ export -f module
++++ type -t ml
+++ '[' function = function ']'
+++ export -f ml
+++ unset _mlcode _mlret
+++ '[' -n '' ']'
+ module load mpi/openmpi-x86_64
+ local _mlredir=0
+ '[' -n '' ']'
+ case " $@ " in
+ '[' 0 -eq 0 ']'
+ _module_raw load mpi/openmpi-x86_64
++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh load mpi/openmpi-x86_64
+ eval 'MPI_COMPILER=openmpi-x86_64; export MPI_COMPILER;
LD_LIBRARY_PATH=/usr/lib64/openmpi/lib:/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/lib; export LD_LIBRARY_PATH;
MANPATH=/usr/share/man/openmpi-x86_64:/usr/share/man:; export MANPATH;
MPI_INCLUDE=/usr/include/openmpi-x86_64; export MPI_INCLUDE;
MPI_MAN=/usr/share/man/openmpi-x86_64; export MPI_MAN;
_LMFILES_=/usr/share/modulefiles/mpi/openmpi-x86_64; export _LMFILES_;
LOADEDMODULES=mpi/openmpi-x86_64; export LOADEDMODULES;
PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH;
MPI_PYTHON3_SITEARCH=/usr/lib64/python3.11/site-packages/openmpi; export MPI_PYTHON3_SITEARCH;
MPI_HOME=/usr/lib64/openmpi; export MPI_HOME;
MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi; export MPI_FORTRAN_MOD_DIR;
__MODULES_LMALTNAME=mpi/openmpi-x86_64\&as\|mpi/default\&as\|mpi/latest; export __MODULES_LMALTNAME;
__MODULES_LMCONFLICT=mpi/openmpi-x86_64\&mpi; export __MODULES_LMCONFLICT;
__MODULES_SHARE_MANPATH=:2; export __MODULES_SHARE_MANPATH;
MPI_SUFFIX=_openmpi; export MPI_SUFFIX;
MPI_SYSCONFIG=/etc/openmpi-x86_64; export MPI_SYSCONFIG;
__MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH;
MPI_LIB=/usr/lib64/openmpi/lib; export MPI_LIB;
PATH=/usr/lib64/openmpi/bin:/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH;
MPI_BIN=/usr/lib64/openmpi/bin; export MPI_BIN;
test 0;'
++ MPI_COMPILER=openmpi-x86_64
++ export MPI_COMPILER
++ LD_LIBRARY_PATH=/usr/lib64/openmpi/lib:/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/lib
++ export LD_LIBRARY_PATH
++ MANPATH=/usr/share/man/openmpi-x86_64:/usr/share/man:
++ export MANPATH
++ MPI_INCLUDE=/usr/include/openmpi-x86_64
++ export MPI_INCLUDE
++ MPI_MAN=/usr/share/man/openmpi-x86_64
++ export MPI_MAN
++ _LMFILES_=/usr/share/modulefiles/mpi/openmpi-x86_64
++ export _LMFILES_
++ LOADEDMODULES=mpi/openmpi-x86_64
++ export LOADEDMODULES
++ PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig
++ export PKG_CONFIG_PATH
++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.11/site-packages/openmpi
++ export MPI_PYTHON3_SITEARCH
++ MPI_HOME=/usr/lib64/openmpi
++ export MPI_HOME
++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi
++ export MPI_FORTRAN_MOD_DIR
++ __MODULES_LMALTNAME='mpi/openmpi-x86_64&as|mpi/default&as|mpi/latest'
++ export __MODULES_LMALTNAME
++ __MODULES_LMCONFLICT='mpi/openmpi-x86_64&mpi'
++ export __MODULES_LMCONFLICT
++ __MODULES_SHARE_MANPATH=:2
++ export __MODULES_SHARE_MANPATH
++ MPI_SUFFIX=_openmpi
++ export MPI_SUFFIX
++ MPI_SYSCONFIG=/etc/openmpi-x86_64
++ export MPI_SYSCONFIG
++ __MODULES_SHARE_PKG_CONFIG_PATH=:1
++ export __MODULES_SHARE_PKG_CONFIG_PATH
++ MPI_LIB=/usr/lib64/openmpi/lib
++ export MPI_LIB
++ PATH=/usr/lib64/openmpi/bin:/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin
++ export PATH
++ MPI_BIN=/usr/lib64/openmpi/bin
++ export MPI_BIN
++ test 0
+ _mlstatus=0
+ return 0
+ export OMPI_MCA_rmaps_base_oversubscribe=1
+ OMPI_MCA_rmaps_base_oversubscribe=1
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer'
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer'
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules'
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes'
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=mpicc
+ export CC
+ CXX=mpicxx
+ export CXX
+ '[' '-flto=auto -ffat-lto-objectsx' '!=' x ']'
++ find . -type f -name configure -print
+ for file in $(find . -type f -name configure -print)
+ /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\) = /__attribute__ ((used)) char (*f) () = /g' ./tools/pdb2idl/configure
+ diff -u ./tools/pdb2idl/configure.backup ./tools/pdb2idl/configure
+ mv ./tools/pdb2idl/configure.backup ./tools/pdb2idl/configure
+ /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\);/__attribute__ ((used)) char (*f) ();/g' ./tools/pdb2idl/configure
+ diff -u ./tools/pdb2idl/configure.backup ./tools/pdb2idl/configure
+ mv ./tools/pdb2idl/configure.backup ./tools/pdb2idl/configure
+ /usr/bin/sed -r --in-place=.backup 's/^char \$2 \(\);/__attribute__ ((used)) char \$2 ();/g' ./tools/pdb2idl/configure
+ diff -u ./tools/pdb2idl/configure.backup ./tools/pdb2idl/configure
+ mv ./tools/pdb2idl/configure.backup ./tools/pdb2idl/configure
+ /usr/bin/sed --in-place=.backup '1{$!N;$!N};$!N;s/int x = 1;\nint y = 0;\nint z;\nint nan;/volatile int x = 1; volatile int y = 0; volatile int z, nan;/;P;D' ./tools/pdb2idl/configure
+ diff -u ./tools/pdb2idl/configure.backup ./tools/pdb2idl/configure
+ mv ./tools/pdb2idl/configure.backup ./tools/pdb2idl/configure
+ /usr/bin/sed --in-place=.backup 's#^lt_cv_sys_global_symbol_to_cdecl=.*#lt_cv_sys_global_symbol_to_cdecl="sed -n -e '\''s/^T .* \\(.*\\)$/extern int \\1();/p'\'' -e '\''s/^$symcode* .* \\(.*\\)$/extern char \\1;/p'\''"#' ./tools/pdb2idl/configure
+ diff -u ./tools/pdb2idl/configure.backup ./tools/pdb2idl/configure
+ mv ./tools/pdb2idl/configure.backup ./tools/pdb2idl/configure
+ for file in $(find . -type f -name configure -print)
+ /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\) = /__attribute__ ((used)) char (*f) () = /g' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\);/__attribute__ ((used)) char (*f) ();/g' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed -r --in-place=.backup 's/^char \$2 \(\);/__attribute__ ((used)) char \$2 ();/g' ./configure
+ diff -u ./configure.backup ./configure
--- ./configure.backup	2023-01-20 22:55:52.425516281 +0000
+++ ./configure	2023-01-20 23:02:28.726322455 +0000
@@ -1864,7 +1864,7 @@
 #ifdef __cplusplus
 extern "C"
 #endif
-char $2 ();
+__attribute__ ((used)) char $2 ();
 /* The GNU C library defines this for functions which it implements
     to always fail with ENOSYS.  Some functions are actually named
     something starting with __ and the normal name is an alias.  */
+ /usr/bin/sed --in-place=.backup '1{$!N;$!N};$!N;s/int x = 1;\nint y = 0;\nint z;\nint nan;/volatile int x = 1; volatile int y = 0; volatile int z, nan;/;P;D' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed --in-place=.backup 's#^lt_cv_sys_global_symbol_to_cdecl=.*#lt_cv_sys_global_symbol_to_cdecl="sed -n -e '\''s/^T .* \\(.*\\)$/extern int \\1();/p'\'' -e '\''s/^$symcode* .* \\(.*\\)$/extern char \\1;/p'\''"#' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ '[' 1 = 1 ']'
+++ dirname ./configure
++ find . -name config.guess -o -name config.sub
+ for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub)
++ basename ./build-aux/config.guess
+ '[' -f /usr/lib/rpm/redhat/config.guess ']'
+ /usr/bin/rm -f ./build-aux/config.guess
++ basename ./build-aux/config.guess
+ /usr/bin/cp -fv /usr/lib/rpm/redhat/config.guess ./build-aux/config.guess
'/usr/lib/rpm/redhat/config.guess' -> './build-aux/config.guess'
+ for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub)
++ basename ./build-aux/config.sub
+ '[' -f /usr/lib/rpm/redhat/config.sub ']'
+ /usr/bin/rm -f ./build-aux/config.sub
++ basename ./build-aux/config.sub
+ /usr/bin/cp -fv /usr/lib/rpm/redhat/config.sub ./build-aux/config.sub
'/usr/lib/rpm/redhat/config.sub' -> './build-aux/config.sub'
+ '[' 1 = 1 ']'
+ '[' x '!=' 'x-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' ']'
++ find . -name ltmain.sh
+ for i in $(find . -name ltmain.sh)
+ /usr/bin/sed -i.backup -e 's~compiler_flags=$~compiler_flags="-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld"~' ./build-aux/ltmain.sh
++ grep -q runstatedir=DIR ./configure
++ echo --runstatedir=/run
+ ./configure --build=x86_64-redhat-linux-gnu --host=x86_64-redhat-linux-gnu --program-prefix= --disable-dependency-tracking --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib64 --libexecdir=/usr/libexec --localstatedir=/var --runstatedir=/run --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info --with-netcdf --with-hdf5 --enable-shared --with-system-mpark --libdir=/usr/lib64/openmpi/lib --bindir=/usr/lib64/openmpi/bin --sbindir=/usr/lib64/openmpi/sbin --includedir=/usr/include/openmpi-x86_64 --datarootdir=/usr/share --with-petsc --with-sundials
configure: WARNING: unrecognized options: --disable-dependency-tracking
checking for x86_64-redhat-linux-gnu-mpic++... no
checking for x86_64-redhat-linux-gnu-mpicxx... no
checking for x86_64-redhat-linux-gnu-mpiCC... no
checking for x86_64-redhat-linux-gnu-sxmpic++... no
checking for x86_64-redhat-linux-gnu-hcp... no
checking for x86_64-redhat-linux-gnu-mpxlC_r... no
checking for x86_64-redhat-linux-gnu-mpxlC... no
checking for x86_64-redhat-linux-gnu-mpixlcxx_r... no
checking for x86_64-redhat-linux-gnu-mpixlcxx... no
checking for x86_64-redhat-linux-gnu-mpg++... no
checking for x86_64-redhat-linux-gnu-mpc++... no
checking for x86_64-redhat-linux-gnu-mpCC... no
checking for x86_64-redhat-linux-gnu-cmpic++... no
checking for x86_64-redhat-linux-gnu-mpiFCC... no
checking for x86_64-redhat-linux-gnu-CCicpc... no
checking for x86_64-redhat-linux-gnu-pgCC... no
checking for x86_64-redhat-linux-gnu-pathCC... no
checking for x86_64-redhat-linux-gnu-sxc++... no
checking for x86_64-redhat-linux-gnu-xlC_r... no
checking for x86_64-redhat-linux-gnu-xlC... no
checking for x86_64-redhat-linux-gnu-bgxlC_r... no
checking for x86_64-redhat-linux-gnu-bgxlC... no
checking for x86_64-redhat-linux-gnu-openCC... no
checking for x86_64-redhat-linux-gnu-sunCC... no
checking for x86_64-redhat-linux-gnu-crayCC... no
checking for x86_64-redhat-linux-gnu-aCC... no
checking for x86_64-redhat-linux-gnu-CC... no
checking for x86_64-redhat-linux-gnu-g++... no
checking for x86_64-redhat-linux-gnu-c++... no
checking for x86_64-redhat-linux-gnu-gpp... no
checking for x86_64-redhat-linux-gnu-cxx... no
checking for x86_64-redhat-linux-gnu-cc++... no
checking for x86_64-redhat-linux-gnu-cl.exe... no
checking for x86_64-redhat-linux-gnu-FCC... no
checking for x86_64-redhat-linux-gnu-KCC... no
checking for x86_64-redhat-linux-gnu-RCC... no
checking for mpic++... mpic++
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C++... yes
checking whether mpic++ accepts -g... yes
checking for mpic++ option to enable C++11 features... none needed
checking for function MPI_Init... yes
checking for mpi.h... yes
checking for a race-free mkdir -p... /usr/bin/mkdir -p
checking whether ln -s works... yes
checking whether make sets $(MAKE)... yes
checking for a BSD-compatible install... /usr/bin/install -c
checking for gmake... gmake
checking for x86_64-redhat-linux-gnu-ranlib... no
checking for ranlib... ranlib
checking whether mpic++ supports C++11 features by default... yes
checking for sqrt in -lm... yes
checking for stdio.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for strings.h... yes
checking for sys/stat.h... yes
checking for sys/types.h... yes
checking for unistd.h... yes
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for malloc.h... yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking for strings.h... (cached) yes
checking build system type... x86_64-redhat-linux-gnu
checking host system type... x86_64-redhat-linux-gnu
checking for GNU libc compatible malloc... yes
checking for GNU libc compatible realloc... yes
checking for vprintf... yes
checking does C++ compiler support __PRETTY_FUNCTION__... yes
checking for a sed that does not truncate output... /usr/bin/sed
checking whether to build with code coverage support... no
checking whether C++ compiler accepts -Werror=unknown-warning-option... no
checking whether C++ compiler accepts -we10006,10148... no
checking whether C++ compiler accepts -Wall... yes
checking whether C++ compiler accepts -Wextra... yes
checking whether C++ compiler accepts -Wnull-dereference... yes
checking whether C++ compiler accepts -Wno-cast-function-type... yes
configure: Enabling default optimisations
checking whether C++ compiler accepts -O2... yes
configure: Run-time checking enabled
configure:  -> Level 2 (Basic checking + stack tracing)
configure: Segmentation fault handling enabled
configure: Output coloring enabled
configure: Field name tracking disabled
configure: Signaling floating point exceptions disabled
checking for addr2line... yes
checking for popen... yes
checking for backtrace... yes
checking for execinfo.h... yes
checking for dlfcn.h... yes
checking for library containing dladdr... none required
configure: Native backtrace enabled
./configure: line 7057: git: command not found
checking for fftw-wisdom... /usr/bin/fftw-wisdom
checking for fftw3.h... yes
checking for libfftw3... yes
checking for ncxx4-config... /usr/bin/ncxx4-config
configure:  -> NetCDF-4 support enabled
configure: Parallel-NetCDF support disabled
checking for gawk... gawk
checking for x86_64-redhat-linux-gnu-gcc... mpicc
checking whether the compiler supports GNU C... yes
checking whether mpicc accepts -g... yes
checking for mpicc option to enable C11 features... none needed
checking for h5cc... /usr/bin/h5cc
checking for HDF5 type... serial
checking for HDF5 libraries... yes (version 1.12.1)
checking for hdf5.h... yes
checking for H5Fcreate in -lhdf5... yes
checking for main in -lhdf5_hl... yes
configure: Found HDF5
checking how to run the C++ preprocessor... mpic++ -E
configure: Parallel HDF5 support disabled
configure: Supported file formats: netCDF HDF5
checking for libblas... no
checking for liblapack... no
checking for x86_64-redhat-linux-gnu-pkg-config... /usr/bin/x86_64-redhat-linux-gnu-pkg-config
checking pkg-config is at least version 0.9.0... yes
configure: Using PETSC_DIR=, PETSC_ARCH=
checking for //conf... no
checking for //lib/petsc/conf... no
checking for PETSC... yes
checking PETSc has SUNDIALS support... no
checking for SUNDIALS config header... yes
checking for SUNDIALS minor version... ok
configure: Searching for SUNDIALS IDA library
checking for sundials-config... no
configure: WARNING: No sundials-config available, no path given, will try compiling with IDA anyway
checking if we can compile with SUNDIALS IDA... yes
configure: Using SUNDIALS IDA solver
configure: => IDA solver enabled
configure: Searching for SUNDIALS CVODE library
checking for sundials-config... (cached) no
configure: WARNING: No sundials-config available, no path given, will try compiling with CVODE anyway
checking if we can compile with SUNDIALS CVODE... yes
configure: Using SUNDIALS CVODE solver
configure: => CVODE solver enabled
configure: Searching for SUNDIALS ARKODE library
checking for sundials-config... (cached) no
configure: WARNING: No sundials-config available, no path given, will try compiling with ARKODE anyway
checking if we can compile with SUNDIALS ARKODE... yes
configure: Using SUNDIALS ARKODE solver
configure: => ARKODE solver enabled
configure: Scorep support disabled
checking for mpark.variant... yes
checking for uuid/uuid.h... no
configure: PVODE being built without OpenMP support
configure: Building PVODE
configure: Successfully built PVODE
configure: Installing PVODE into BOUT++ sourcetree
checking whether NLS is requested... yes
checking for msgfmt... /usr/bin/msgfmt
checking for gmsgfmt... /usr/bin/msgfmt
checking for xgettext... /usr/bin/xgettext
checking for msgmerge... /usr/bin/msgmerge
checking for ld used by mpicc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for shared library run path origin... done
checking 32-bit host C ABI... no
checking for ELF binary format... yes
checking for the common suffixes of directories in the library search path... lib,lib,lib64
checking for CFPreferencesCopyAppValue... no
checking for CFLocaleCopyPreferredLanguages... no
checking for GNU gettext in libc... yes
checking whether to use NLS... yes
checking where the gettext function comes from... libc
configure: Enabling language support with gettext
gmake: Entering directory '/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/locale'
Building language:  de
Building language:  es
Building language:  fr
Building language:  zh_CN
Building language:  zh_TW
gmake: Leaving directory '/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/locale'
configure: creating ./config.status
config.status: creating make.config
config.status: executing po-directories commands
configure: WARNING: unrecognized options: --disable-dependency-tracking
configure: creating ./config.status
config.status: creating make.config
config.status: creating bin/bout-config
config.status: creating src/makefile
config.status: creating tools/pylib/boutconfig/__init__.py
config.status: executing po-directories commands
configure: WARNING: unrecognized options: --disable-dependency-tracking
configure: -------------------------
configure:   Configuration summary  
configure: -------------------------
configure:   PETSc support           : yes (has SUNDIALS: no)
configure:   SLEPc support           : no
configure:   IDA support             : yes
configure:   CVODE support           : yes
configure:   ARKODE support          : yes
configure:   FFTW support            : yes
configure:   NetCDF support          : yes
configure:   Parallel-NetCDF support : no
configure:   HDF5 support            : yes (parallel: no)
configure:   MUMPS support           : no
configure:   Lapack support          : no
configure:   Scorep support          : no
configure:   OpenMP support          : no (schedule: )
configure:   Natural language support: yes (path: ${datarootdir}/locale)
configure:   System UUID generator   : no
configure: 
configure: -------------------------------
configure:   Data analysis configuration  
configure: -------------------------------
configure: 
configure: === IDL ===
configure: 
configure: Make sure that the tools/idllib directory is in your IDL_PATH
configure: e.g. by adding to your ~/.bashrc file
configure: 
configure:     export IDL_PATH=+/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tools/idllib:'<IDL_DEFAULT>':$IDL_PATH
configure: 
configure: === Python ===
configure: 
configure: Make sure that the tools/pylib directory is in your PYTHONPATH
configure: e.g. by adding to your ~/.bashrc file
configure: 
configure:    export PYTHONPATH=/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tools/pylib/:$PYTHONPATH
configure: 
configure: *** Now run 'gmake' to compile BOUT++ ***
+ sed -e 's| -L/usr/lib64 | |g' -e 's| -Wl,--as-needed | |g' -i make.config
+ sed -e 's|-lblas|-lflexiblas|g' -e 's|-llapack|-lflexiblas|g' -i make.config
+ sed -e 's/\\#/#/g' -i make.config
+ cat make.config
# configuration file for BOUT++
# September 2008: Converted to use autoconf. Can be manually edited
# for the (very) rare occasions when autoconf fails
# extra compilation flags:
# -DCHECK=lvl  Enables a host of additional checks on each operation
#              such as uninitialised data if lvl is > 0. -DCHECK=3
#              enables all tests, while -DCHECK=0 disables them.
#              Helps when debugging
# -DTRACK      Keeps track of variable names.
#              Enables more useful error messages
# for SSE2: -msse2 -mfpmath=sse
# 
# This must also specify one or more file formats
# -DPDBF  PDB format (need to include pdb_format.cxx)
# -DNCDF  NetCDF format (nc_format.cxx)
# PETSc config variables need to be first, else they may clobber other
# options (e.g. CXX, CXXFLAGS)
PETSC_DIR ?= 
PETSC_ARCH ?= 
SLEPC_DIR ?= 
SLEPC_ARCH ?= 
# These lines can be replaced in "make install" to point to install directories
# They are used in the CXXFLAGS variable below rather than hard-coding the directories
BOUT_INCLUDE_PATH=$(BOUT_TOP)/include
BOUT_LIB_PATH=$(BOUT_TOP)/lib
BOUT_CONFIG_FILE=$(BOUT_TOP)/make.config
SONAME=4.4.0
prefix = /usr
exec_prefix = /usr
datarootdir = /usr/share
# This path to the locale (.mo) files is hard-wired into bout++.cxx at compile time
BOUT_LOCALE_PATH=${datarootdir}/locale
# Created this variable so that a user won't overwrite the CXXFLAGS variable
# on the command line, just add to this one
BOUT_FLAGS = $(CXXFLAGS) -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DHAS_PRETTY_FUNCTION -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -DSIGHANDLE -DLOGCOLOR -DBOUT_VERSION_STRING="\"4.4.2\"" -DBOUT_VERSION_DOUBLE=4.42  -DBACKTRACE -fPIC -DBOUT_HAS_FFTW -DNCDF4 -DHDF5 -DBOUT_HAS_PETSC -DBOUT_HAS_IDA -DBOUT_HAS_CVODE -DBOUT_HAS_ARKODE -DBOUT_HAS_PVODE -DBOUT_HAS_GETTEXT -DBOUT_LOCALE_PATH=$(BOUT_LOCALE_PATH)   
#Use := here to force a "static" evaluation of the current state of BOUT_FLAGS to
#avoid infinite recursion that would arise if BOUT_FLAGS appeared on both sides of =
BOUT_FLAGS := $(BOUT_FLAGS) -DBOUT_FLAGS_STRING="$(BOUT_FLAGS)"
# Specify the MPI C++ compiler in CXX
CXX		= mpic++
CC      = $(CXX)
AR		= ar
ARFLAGS = cruU
RANLIB	= ranlib
MKDIR	= /usr/bin/mkdir -p
####################################################################
# Do not need to alter anything below
####################################################################
LD       = $(CXX)
LDFLAGS  = -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes
LIBS     = -lm  
CPPFLAGS = 
####################################################################
# Extra (optional) source files, includes and libs
# NOTE: EXTRA_SRC must include a solver (solver.cxx or ida_solver.cxx)
#       and a file format (nc_format.cxx or pdb_format.cxx)
####################################################################
EXTRA_INCS	  = $(CPPFLAGS)  -I/usr/include -I/usr/include -I/usr/include/openmpi-x86_64/petsc     
EXTRA_LIBS	  = $(LIBS)  -lfftw3 -lnetcdf_c++4 -lnetcdf  -lhdf5_hl -lhdf5  -lhdf5_hl -lsz -lz -ldl -lm -L/usr/lib64/openmpi/lib -lpetsc -lhdf5   -lsundials_ida -lsundials_nvecparallel   -lsundials_cvode -lsundials_nvecparallel   -lsundials_arkode -lsundials_nvecparallel  -L$(BOUT_LIB_PATH) -lpvode -lpvpre  
PRECON_SOURCE = 
BOUT_VERSION  = 4.4.2
####################################################################
# These are used for compiling physics modules using BOUT++ library
####################################################################
# Files that are needed by configure and should be dependencies for 'all'
OBJ    = $(SOURCEC:%.cxx=%.o)
ifndef RELEASE
LIB_A  = $(BOUT_LIB_PATH)/libbout++.a
LIB_SO = $(BOUT_LIB_PATH)/libbout++.so
LIB    =  $(BOUT_LIB_PATH)/libbout++.so
endif
MPARK_VARIANT_INCLUDE_PATH=
BOUT_INCLUDE = -I$(BOUT_INCLUDE_PATH) $(CXXINCLUDE) $(EXTRA_INCS) 
BOUT_LIBS    = -lm -L$(BOUT_LIB_PATH) -lbout++ $(EXTRA_LIBS)
CHANGED = $(shell find -f $(BOUT_TOP)/include $(BOUT_TOP)/src -type f \( -name \*.cxx -or -name \*.h \) -newer $(LIB) -print 2> /dev/null)
# This will set a default if no TARGET is provided
TARGET				?= $(SOURCEC:%.cxx=%)
####################################################################
# Definining stuff for recursive make
####################################################################
# Phony targets since they are directory names
.PHONY: $(DIRS) lib install libfast runtest manual sphinx doxygen
ifneq ("$(TARGET)","libfast")
all: $(BOUT_CONFIG_FILE) $(DIRS) $(TARGET)
else
all: $(BOUT_TOP)/config.status $(BOUT_CONFIG_FILE) $(DIRS)
endif
libfast: $(BOUT_CONFIG_FILE) $(DIRS)
####################################################################
# Recursively run make through subdirs
####################################################################
ifeq ("$(TARGET)" , "lib")
$(DIRS):
# make $@ slowly using the old method where parallel builds can cause
# race conditions that 
	@$(MAKE) -s --no-print-directory TARGET=lib -C $@ all
else
ifeq ("$(TARGET)","libfast")
$(DIRS):
# make $@ using the libfast method, where all .o files
# are only created in the end
	@$(MAKE) -s --no-print-directory TARGET=$(TARGET) -C $@ $(TARGET)
else
MODULE_DIR?=$(shell pwd)
$(DIRS):
# MODULE_DIR: pass the module directory, where the libraries should be
# created.
# SUB_NAME is used for creating a library with the expected name.
# first a potential trailing slash is removed, and after that the
# directory name is extracted. This allows to e.g. specify a directory
# as fuu/bar/ and still get an archive named bar.a
# The # probably doesn't need to be escaped as everything in the
# recipy is passed to the shell, even lines starting with #
	@$(MAKE) -s --no-print-directory MODULE_DIR=$(MODULE_DIR) SUB_NAME=$(shell f=$@ ; g=$${f%/} ; echo $${g##*/}) TARGET=sub -C $@
endif
endif
# Create 'lib' and 'include' incase they don't exist
$(BOUT_TOP)/include $(BOUT_TOP)/lib:
	$(MKDIR) $@
####################################################################
# Install header files and libraries
####################################################################
INSTALL = /usr/bin/install -c
INSTALL_PROGRAM = ${INSTALL}
INSTALL_DATA = ${INSTALL} -m 644
INSTALL_INCLUDE_PATH = $(DESTDIR)/usr/include/openmpi-x86_64/bout++/
# A list of relative paths e.g. "fr/LC_MESSAGES/libbout.mo zh_CN/LC_MESSAGES/libbout.mo"
MO_FILES = $(shell cd locale; ls */LC_MESSAGES/libbout.mo)
install: libfast
	$(PRE_INSTALL)     # Pre-install commands follow.
	$(NORMAL_INSTALL)  # Normal commands follow.
	$(MKDIR) $(INSTALL_INCLUDE_PATH)/{,pvode,bout/sys,bout/invert}
	$(MKDIR) $(DESTDIR)/{/usr/lib64/openmpi/lib,/usr/lib64/openmpi/bin,/usr/share/bout++/idllib}
	$(INSTALL_DATA) include/*.hxx $(INSTALL_INCLUDE_PATH)
ifeq ("", "yes")
	$(MKDIR) $(INSTALL_INCLUDE_PATH)/mpark
	$(INSTALL_DATA) $(MPARK_VARIANT_INCLUDE_PATH)/mpark/*.hpp $(INSTALL_INCLUDE_PATH)/mpark
endif
	$(INSTALL_DATA) include/pvode/*.h $(INSTALL_INCLUDE_PATH)/pvode/
	$(INSTALL_DATA) include/bout/*.hxx $(INSTALL_INCLUDE_PATH)/bout/
	$(INSTALL_DATA) include/bout/sys/*.hxx $(INSTALL_INCLUDE_PATH)/bout/sys/
	$(INSTALL_DATA) include/bout/invert/*.hxx $(INSTALL_INCLUDE_PATH)/bout/invert/
ifneq ("x", "x")
	$(INSTALL_DATA) lib/libbout++.a $(DESTDIR)/usr/lib64/openmpi/lib
	$(INSTALL_DATA) lib/libpvode.a $(DESTDIR)/usr/lib64/openmpi/lib
	$(INSTALL_DATA) lib/libpvpre.a $(DESTDIR)/usr/lib64/openmpi/lib
endif
ifneq ("$(RM) -f $(BOUT_LIB_PATH)/libbout++.ax", "x")
	$(INSTALL_PROGRAM) lib/libbout++.so.$(SONAME) $(DESTDIR)/usr/lib64/openmpi/lib
	$(INSTALL_PROGRAM) lib/libpvode.so.* $(DESTDIR)/usr/lib64/openmpi/lib
	$(INSTALL_PROGRAM) lib/libpvpre.so.* $(DESTDIR)/usr/lib64/openmpi/lib
	rm -f $(DESTDIR)/usr/lib64/openmpi/lib/lib{bout++,pvode,pvpre}.so
	ln -s libbout++.so.$(SONAME) $(DESTDIR)/usr/lib64/openmpi/lib/libbout++.so
	ln -s libpvode.so.1.0.0 $(DESTDIR)/usr/lib64/openmpi/lib/libpvode.so
	ln -s libpvpre.so.1.0.0 $(DESTDIR)/usr/lib64/openmpi/lib/libpvpre.so
endif
	$(INSTALL_PROGRAM)  bin/bout-config $(DESTDIR)/usr/lib64/openmpi/bin
	$(INSTALL_PROGRAM)  bin/bout-log-color $(DESTDIR)/usr/lib64/openmpi/bin
	$(INSTALL_DATA)  tools/idllib/*.pro $(DESTDIR)/usr/share/bout++/idllib/
	$(INSTALL_DATA)  tools/idllib/README $(DESTDIR)/usr/share/bout++/idllib/
	$(INSTALL_DATA)  make.config $(INSTALL_INCLUDE_PATH)
	for mo in $(MO_FILES); do $(MKDIR) $(DESTDIR)${datarootdir}/locale/`dirname $$mo`; $(INSTALL_DATA) locale/$$mo $(DESTDIR)${datarootdir}/locale/$$mo; done
	$(POST_INSTALL)    # Post-install commands follow.
	@# Modify paths in the bout-config script 
	sed -i "s|^BOUT_INCLUDE_PATH=.*|BOUT_INCLUDE_PATH=/usr/include/openmpi-x86_64/bout++|" $(DESTDIR)/usr/lib64/openmpi/bin/bout-config 
	sed -i "s|^BOUT_LIB_PATH=.*|BOUT_LIB_PATH=/usr/lib64/openmpi/lib|" $(DESTDIR)/usr/lib64/openmpi/bin/bout-config
	sed -i "s|^BOUT_CONFIG_FILE=.*|BOUT_CONFIG_FILE=/usr/share/bout++/make.config|" $(DESTDIR)/usr/lib64/openmpi/bin/bout-config
	sed -i "s|^idlpath=.*|idlpath=/usr/share/bout++/idllib/|" $(DESTDIR)/usr/lib64/openmpi/bin/bout-config
	sed -i "s|^pythonpath=.*|pythonpath=/usr/share/bout++/pylib/|" $(DESTDIR)/usr/lib64/openmpi/bin/bout-config
ifeq ("", "yes")
	sed -i "s|^MPARK_VARIANT_INCLUDE_PATH=.*|MPARK_VARIANT_INCLUDE_PATH=/usr/include/openmpi-x86_64/bout++|" $(DESTDIR)/usr/lib64/openmpi/bin/bout-config
endif
	@# Modify paths in the make.config file
	sed -i "s|^BOUT_INCLUDE_PATH=.*|BOUT_INCLUDE_PATH=/usr/include/openmpi-x86_64/bout++|" $(INSTALL_INCLUDE_PATH)/make.config
	sed -i "s|^BOUT_LIB_PATH=.*|BOUT_LIB_PATH=/usr/lib64/openmpi/lib|" $(INSTALL_INCLUDE_PATH)/make.config
	sed -i "s|^BOUT_CONFIG_FILE=.*|BOUT_CONFIG_FILE=/usr/include/openmpi-x86_64/bout++/make.config|" $(INSTALL_INCLUDE_PATH)/make.config
ifeq ("", "yes")
	sed -i "s|^MPARK_VARIANT_INCLUDE_PATH=.*|MPARK_VARIANT_INCLUDE_PATH=/usr/include/openmpi-x86_64/bout++|" $(INSTALL_INCLUDE_PATH)/make.config
endif
#	Set the make.config as released, so the library isn't rebuild. This way the .a file doesn't need to be preserved/installed
	sed -i '26 i RELEASED                 = yes' $(INSTALL_INCLUDE_PATH)/make.config
uninstall:
	$(PRE_UNINSTALL)     # Pre-uninstall commands follow.
	$(NORMAL_UNINSTALL)  # Normal commands follow.
	$(RM) $(INSTALL_INCLUDE_PATH)/make.config
	$(RM) -r $(DESTDIR)/usr/share/bout++/idllib/
	$(RM) $(DESTDIR)/usr/lib64/openmpi/bin/bout-config
	$(RM) $(DESTDIR)/usr/lib64/openmpi/bin/bout-log-color
	$(RM) $(DESTDIR)/usr/lib64/openmpi/lib/libbout++.a
	$(RM) $(DESTDIR)/usr/lib64/openmpi/lib/libpvode.a
	$(RM) $(DESTDIR)/usr/lib64/openmpi/lib/libpvpre.a
	$(RM) -r  $(DESTDIR)/usr/include/openmpi-x86_64/bout++/
	$(RM) $(DESTDIR)${datarootdir}/locale/*/LC_MESSAGES/libbout.mo
	$(POST_UNINSTALL)    # Post-uninstall commands follow.
####################################################################
# Builds the library with $(OBJ) which is defined from the SOURCEC variable
####################################################################
# Rules for downloading submodules
-include $(BOUT_TOP)/makefile.submodules
ifeq ("$(TARGET)", "libfast")
libfast: makefile $(BOUT_CONFIG_FILE) $(BOUT_TOP)/include $(OBJ) $(DIRS)
endif
ifeq ("$(TARGET)", "lib")
lib: makefile $(BOUT_CONFIG_FILE) $(BOUT_TOP)/include $(BOUT_TOP)/lib $(OBJ)
ifneq ("$(OBJ)foo", "foo")
	@echo "  Adding $(OBJ) to libbout++.a"
	@$(AR) $(ARFLAGS) $(LIB_A) $(OBJ)
	@$(RANLIB) $(LIB)
endif
endif
ifeq ("$(TARGET)", "sub")
LIB=$(MODULE_DIR)/$(SUB_NAME).a
sub: makefile $(BOUT_CONFIG_FILE) $(BOUT_TOP)/include $(BOUT_TOP)/lib $(OBJ)
ifneq ("$(OBJ)foo", "foo")
	@echo "  Adding $(OBJ) to $(LIB)"
	@$(AR) $(ARFLAGS) $(LIB) $(OBJ)
	@$(RANLIB) $(LIB)
endif
endif
runtest:
	./runtest
ifneq ("$(TARGET)", "sub")
ifneq ("$(TARGET)", "libfast")
ifneq ("$(TARGET)", "lib")
ifneq ("$(TARGET)", "runtest")
####################################################################
# Make libbout++.a if it doesn't exist with the checklib target
####################################################################
libbout++.a:
	@echo "Rebuilding out-of-date bout++ library"
	@$(MAKE) --no-print-directory -C $(BOUT_TOP)
 
####################################################################
# Make the target (e.g. gas_compress)
####################################################################
# first we remove a trailing slash, if present. Note that currently we
# dont support several trailing slashes, as in fuu/bar/// 
DIRS_=$(DIRS:%/=%)
# then we extract the directory name, in case it is a longer path
# We are not in a recipe, so # needs to be escaped
# $$ is an escaped $
DIRS__=$(shell for f in $(DIRS_) ; do echo $${f##*/};done)
# now we can generate a list of libraries
SUB_LIBS=$(DIRS__:%=%.a)
$(SUB_LIBS):$(DIRS__)
$(SOURCEC): checklib
$(SOURCEC:%.cxx=%.o): $(LIB)
$(TARGET): makefile $(BOUT_CONFIG_FILE) $(OBJ) $(SUB_LIBS)
	@echo "  Linking" $(TARGET)
	@$(LD) -o $(TARGET) $(OBJ) $(SUB_LIBS) $(BOUT_LIBS) $(LDFLAGS)
checklib:
ifneq ("$(CHANGED)foo", "foo")
	@echo "Rebuilding out-of-date bout++ library"
	@$(MAKE) --no-print-directory -C $(BOUT_TOP)
endif
endif
endif
endif
endif
# Ignore missing requirement files
-include .*.mk
# If it is a libfast target, track changes to rebuild library if needed
#
# Further track dependencies using gcc's -M feature:
# -MF  write the generated dependency rule to a file
# -MG  assume missing headers will be generated and don't stop with an error
# -MM  generate dependency rule for prerequisite, skipping system headers
# -MP  add phony target for each header to prevent errors when header is missing
# -MT  add a target to the generated dependency
# Ignore failure, in case some compiler does not support this
%.o: $(BOUT_CONFIG_FILE) %.cxx
	@echo "  Compiling " $(@:.o=.cxx)
	@$(CXX) $(BOUT_INCLUDE) $(BOUT_FLAGS) -c $(@:.o=.cxx) -o $@
ifeq ("$(TARGET)","libfast")
	test "$@" = "bout++-time.o" || touch $(BOUT_TOP)/lib/.last.o.file
endif
####################################################################
# Clean target. Pretty self explanatory.
# NOTE: See that double colon (::) below? That's signifies a rule that can be added to later
# See:
# http://owen.sj.ca.us/~rk/howto/slides/make/slides/makecolon.html
####################################################################
clean::
	-@$(RM) -rf $(OBJ) $(DEPS) $(TARGET)
	@for pp in $(DIRS) $(DIRS_CLEAN); do echo "  " cleaning $$pp; $(MAKE) --no-print-directory -C $$pp clean; done
	@$(RM) -f $(SUB_LIBS)
	-@$(RM) .*.mk
	@test -f make.config && ( find src | grep '\.o$$' && echo "WARNING: Some object files remain - which might cause issues. Clean with $(MAKE) clean-remove-object-files" ) || exit 0
clean-remove-object-files:
	find src|grep '\.o$$' | xargs rm
distclean:: clean clean-tests
	@echo include cleaned
# Removing the externalpackage installation. When we have more packages, need a better way
	@$(RM) -rf $(BOUT_TOP)/include/pvode
	@echo lib cleaned
	@$(RM) -rf $(BOUT_TOP)/lib/*
	-@$(RM) $(BOUT_TOP)/externalpackages/PVODE/lib/*.a
	-@$(RM) $(BOUT_TOP)/externalpackages/PVODE/source/obj/*.o
	-@$(RM) $(BOUT_TOP)/externalpackages/PVODE/precon/obj/*.o
	-@$(RM) -rf $(BOUT_TOP)/autom4te.cache make.config
	@echo externalpackages cleaned
	@touch $(BOUT_TOP)/configure
	@echo autom4te.cache cleaned
	-@$(RM) $(BOUT_TOP)/tools/pylib/boutconfig/__init__.py
	@echo generated Python boutconfig module cleaned
clean-tests: clean-unit-tests clean-integrated-tests clean-mms-tests
clean-unit-tests:
	@echo "   tests/unit cleaned"
	@$(MAKE) --no-print-directory -C tests/unit clean
clean-integrated-tests:
	@echo "   tests/integrated cleaned"
	@$(MAKE) --no-print-directory -C tests/integrated clean
clean-mms-tests:
	@echo "   tests/MMS cleaned"
	@$(MAKE) --no-print-directory -C tests/MMS clean
####################################################################
# Documentation
####################################################################
MANUAL_DIR=$(BOUT_TOP)/manual
doxygen:
	$(MAKE) -C $(MANUAL_DIR) doxygen
breathe-autogen:
	$(MAKE) -C $(MANUAL_DIR) breathe_autogen
sphinx-docs-html:
	$(MAKE) -C $(MANUAL_DIR) sphinx-html
sphinx-docs-latex:
	$(MAKE) -C $(MANUAL_DIR) sphinx-pdf
manual:
	$(MAKE) -C $(MANUAL_DIR)
manual-html:
	$(MAKE) -C $(MANUAL_DIR) html
manual-pdf:
	$(MAKE) -C $(MANUAL_DIR) pdf
python: libfast
	$(MAKE) -C tools/pylib python3
python2: libfast
	$(MAKE) -C tools/pylib python2
python-all:python python2
######################################################################
# Code coverage
######################################################################
GCOV = 
LCOV = 
GENHTML = 
abs_builddir = /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi
# Code coverage
#
# Optional:
#  - CODE_COVERAGE_DIRECTORY: Top-level directory for code coverage reporting.
#    Multiple directories may be specified, separated by whitespace.
#    (Default: $(top_builddir))
#  - CODE_COVERAGE_OUTPUT_FILE: Filename and path for the .info file generated
#    by lcov for code coverage. (Default:
#    bout-coverage.info)
#  - CODE_COVERAGE_OUTPUT_DIRECTORY: Directory for generated code coverage
#    reports to be created. (Default:
#    bout-coverage)
#  - CODE_COVERAGE_BRANCH_COVERAGE: Set to 1 to enforce branch coverage,
#    set to 0 to disable it and leave empty to stay with the default.
#    (Default: empty)
#  - CODE_COVERAGE_LCOV_SHOPTS_DEFAULT: Extra options shared between both lcov
#    instances. (Default: based on $CODE_COVERAGE_BRANCH_COVERAGE)
#  - CODE_COVERAGE_LCOV_SHOPTS: Extra options to shared between both lcov
#    instances. (Default: $CODE_COVERAGE_LCOV_SHOPTS_DEFAULT)
#  - CODE_COVERAGE_LCOV_OPTIONS_GCOVPATH: --gcov-tool pathtogcov
#  - CODE_COVERAGE_LCOV_OPTIONS_DEFAULT: Extra options to pass to the
#    collecting lcov instance. (Default: $CODE_COVERAGE_LCOV_OPTIONS_GCOVPATH)
#  - CODE_COVERAGE_LCOV_OPTIONS: Extra options to pass to the collecting lcov
#    instance. (Default: $CODE_COVERAGE_LCOV_OPTIONS_DEFAULT)
#  - CODE_COVERAGE_LCOV_RMOPTS_DEFAULT: Extra options to pass to the filtering
#    lcov instance. (Default: empty)
#  - CODE_COVERAGE_LCOV_RMOPTS: Extra options to pass to the filtering lcov
#    instance. (Default: $CODE_COVERAGE_LCOV_RMOPTS_DEFAULT)
#  - CODE_COVERAGE_GENHTML_OPTIONS_DEFAULT: Extra options to pass to the
#    genhtml instance. (Default: based on $CODE_COVERAGE_BRANCH_COVERAGE)
#  - CODE_COVERAGE_GENHTML_OPTIONS: Extra options to pass to the genhtml
#    instance. (Default: $CODE_COVERAGE_GENHTML_OPTIONS_DEFAULT)
#  - CODE_COVERAGE_IGNORE_PATTERN: Extra glob pattern of files to ignore
#
# The generated report will be titled using the $(PACKAGE_NAME) and
# $(PACKAGE_VERSION). In order to add the current git hash to the title,
# use the git-version-gen script, available online.
# Optional variables
CODE_COVERAGE_DIRECTORY ?= $(abs_builddir)
CODE_COVERAGE_OUTPUT_FILE ?= bout-coverage.info
CODE_COVERAGE_OUTPUT_DIRECTORY ?= bout-coverage
CODE_COVERAGE_BRANCH_COVERAGE ?=
CODE_COVERAGE_LCOV_SHOPTS_DEFAULT ?= $(if $(CODE_COVERAGE_BRANCH_COVERAGE),\
--rc lcov_branch_coverage=$(CODE_COVERAGE_BRANCH_COVERAGE))
CODE_COVERAGE_LCOV_SHOPTS ?= $(CODE_COVERAGE_LCOV_SHOPTS_DEFAULT)
CODE_COVERAGE_LCOV_OPTIONS_GCOVPATH ?= --gcov-tool "$(GCOV)"
CODE_COVERAGE_LCOV_OPTIONS_DEFAULT ?= $(CODE_COVERAGE_LCOV_OPTIONS_GCOVPATH)
CODE_COVERAGE_LCOV_OPTIONS ?= $(CODE_COVERAGE_LCOV_OPTIONS_DEFAULT)
CODE_COVERAGE_LCOV_RMOPTS_DEFAULT ?=
CODE_COVERAGE_LCOV_RMOPTS ?= $(CODE_COVERAGE_LCOV_RMOPTS_DEFAULT)
CODE_COVERAGE_GENHTML_OPTIONS_DEFAULT ?=\
$(if $(CODE_COVERAGE_BRANCH_COVERAGE),\
--rc genhtml_branch_coverage=$(CODE_COVERAGE_BRANCH_COVERAGE))
CODE_COVERAGE_GENHTML_OPTIONS ?= $(CODE_COVERAGE_GENHTML_OPTIONS_DEFAULT)
CODE_COVERAGE_IGNORE_PATTERN ?= "*test*/*"
# Use recursive makes in order to ignore errors during check
check-code-coverage:
	@echo "Need to reconfigure with --enable-code-coverage"
# Capture code coverage data
code-coverage-capture: code-coverage-capture-hook
	@echo "Need to reconfigure with --enable-code-coverage"
# Hook rule executed before code-coverage-capture, overridable by the user
code-coverage-capture-hook:
GITIGNOREFILES ?=
GITIGNOREFILES += $(CODE_COVERAGE_OUTPUT_FILE) $(CODE_COVERAGE_OUTPUT_DIRECTORY)
.PHONY: check-code-coverage code-coverage-capture code-coverage-capture-hook code-coverage-clean
+ make -j2 shared
  Compiling  field.cxx
  Compiling  nc_format.cxx
  Compiling  ncxx4.cxx
In file included from ../../include/field.hxx:41,
                 from field.cxx:28:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../include/field.hxx:34:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
In file included from ../../../../include/bout/scorepwrapper.hxx:5,
                 from ../../../../include/bout/deriv_store.hxx:37,
                 from ../../../../include/bout/mesh.hxx:49,
                 from ncxx4.cxx:27:
../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../../../include/dataformat.hxx:40,
                 from ncxx4.hxx:48,
                 from ncxx4.cxx:23:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
In file included from /usr/include/openmpi-x86_64/ncFile.h:2,
                 from /usr/include/openmpi-x86_64/netcdf:16,
                 from ncxx4.hxx:51:
/usr/include/openmpi-x86_64/ncGroup.h: At global scope:
/usr/include/openmpi-x86_64/ncGroup.h:18:14: warning: 'netCDF::file_id' defined but not used [-Wunused-variable]
   18 |   static int file_id;
      |              ^~~~~~~
  Compiling  field2d.cxx
In file included from ../../include/field.hxx:41,
                 from ../../include/field2d.hxx:34,
                 from field2d.cxx:33:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ios:41,
                 from /usr/include/c++/13/ostream:40,
                 from /usr/include/c++/13/iostream:41,
                 from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57,
                 from /usr/include/openmpi-x86_64/mpi.h:2887,
                 from ../../include/boutcomm.hxx:33,
                 from field2d.cxx:28:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  pnetcdf.cxx
  Compiling  h5_format.cxx
In file included from ../../../../include/utils.hxx:38,
                 from h5_format.cxx:28:
../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../../../include/dataformat.hxx:40,
                 from ../../../../include/datafile.hxx:20,
                 from ../../../../include/globals.hxx:30,
                 from h5_format.cxx:23:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  field3d.cxx
In file included from ../../include/field.hxx:41,
                 from ../../include/field3d.hxx:30,
                 from field3d.cxx:33:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ios:41,
                 from /usr/include/c++/13/ostream:40,
                 from /usr/include/c++/13/iostream:41,
                 from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57,
                 from /usr/include/openmpi-x86_64/mpi.h:2887,
                 from ../../include/boutcomm.hxx:33,
                 from field3d.cxx:28:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  datafile.cxx
In file included from ../../include/bout/scorepwrapper.hxx:5,
                 from ../../include/bout/deriv_store.hxx:37,
                 from ../../include/bout/mesh.hxx:49,
                 from datafile.cxx:39:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../include/dataformat.hxx:40,
                 from ../../include/datafile.hxx:20,
                 from ../../include/globals.hxx:30,
                 from datafile.cxx:38:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  fieldperp.cxx
In file included from ../../include/bout/scorepwrapper.hxx:5,
                 from ../../include/bout/deriv_store.hxx:37,
                 from ../../include/bout/mesh.hxx:49,
                 from fieldperp.cxx:31:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ios:41,
                 from /usr/include/c++/13/ostream:40,
                 from /usr/include/c++/13/iostream:41,
                 from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57,
                 from /usr/include/openmpi-x86_64/mpi.h:2887,
                 from ../../include/boutcomm.hxx:33,
                 from fieldperp.cxx:26:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  field_data.cxx
  Compiling  dataformat.cxx
In file included from ../../include/bout/scorepwrapper.hxx:5,
                 from ../../include/bout/deriv_store.hxx:37,
                 from ../../include/bout/mesh.hxx:49,
                 from field_data.cxx:2:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ios:41,
                 from /usr/include/c++/13/ostream:40,
                 from /usr/include/c++/13/iostream:41,
                 from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57,
                 from /usr/include/openmpi-x86_64/mpi.h:2887,
                 from ../../include/bout/mesh.hxx:46:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
In file included from ../../include/bout/scorepwrapper.hxx:5,
                 from ../../include/bout/deriv_store.hxx:37,
                 from ../../include/bout/mesh.hxx:49,
                 from dataformat.cxx:2:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ios:41,
                 from /usr/include/c++/13/ostream:40,
                 from /usr/include/c++/13/iostream:41,
                 from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57,
                 from /usr/include/openmpi-x86_64/mpi.h:2887,
                 from ../../include/bout/mesh.hxx:46:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  formatfactory.cxx
  Compiling  fieldgroup.cxx
In file included from ../../include/utils.hxx:38,
                 from formatfactory.cxx:15:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../include/dataformat.hxx:40,
                 from ../../include/datafile.hxx:20,
                 from ../../include/globals.hxx:30,
                 from formatfactory.cxx:2:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
In file included from /usr/include/openmpi-x86_64/ncFile.h:2,
                 from /usr/include/openmpi-x86_64/netcdf:16,
                 from impls/netcdf4/ncxx4.hxx:51,
                 from formatfactory.cxx:8:
/usr/include/openmpi-x86_64/ncGroup.h: At global scope:
/usr/include/openmpi-x86_64/ncGroup.h:18:14: warning: 'netCDF::file_id' defined but not used [-Wunused-variable]
   18 |   static int file_id;
      |              ^~~~~~~
  Compiling  cyclic.cxx
In file included from ../../include/field.hxx:41,
                 from ../../include/field3d.hxx:30,
                 from ../../include/bout/fieldgroup.hxx:5,
                 from fieldgroup.cxx:2:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../include/field_data.hxx:37,
                 from ../../include/bout/fieldgroup.hxx:4:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
In file included from ../../../../../include/field.hxx:41,
                 from ../../../../../include/field2d.hxx:34,
                 from ../../../../../include/derivs.hxx:32,
                 from cyclic.cxx:38:
../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../../../../include/field.hxx:34:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  field_factory.cxx
In file included from ../../include/bout/scorepwrapper.hxx:5,
                 from ../../include/bout/deriv_store.hxx:37,
                 from ../../include/bout/mesh.hxx:49,
                 from ../../include/field_factory.hxx:32,
                 from field_factory.cxx:24:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../include/dataformat.hxx:40,
                 from ../../include/datafile.hxx:20,
                 from ../../include/globals.hxx:30,
                 from field_factory.cxx:22:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  invert_parderiv.cxx
In file included from ../../../include/field.hxx:41,
                 from ../../../include/field3d.hxx:30,
                 from ../../../include/invert_parderiv.hxx:34,
                 from invert_parderiv.cxx:30:
../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../../include/field.hxx:34:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  parderiv_factory.cxx
In file included from ../../../include/field.hxx:41,
                 from ../../../include/field3d.hxx:30,
                 from ../../../include/invert_parderiv.hxx:34,
                 from parderiv_factory.cxx:3:
../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ios:41,
                 from /usr/include/c++/13/ostream:40,
                 from /usr/include/c++/13/iostream:41,
                 from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57,
                 from /usr/include/openmpi-x86_64/mpi.h:2887,
                 from ../../../include/boutcomm.hxx:33,
                 from parderiv_factory.cxx:2:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  fieldgenerators.cxx
In file included from ../../include/bout/scorepwrapper.hxx:5,
                 from ../../include/bout/deriv_store.hxx:37,
                 from ../../include/bout/mesh.hxx:49,
                 from ../../include/field_factory.hxx:32,
                 from fieldgenerators.hxx:11,
                 from fieldgenerators.cxx:2:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from ../../include/boutexception.hxx:7,
                 from fieldgenerators.hxx:10:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  serial_tri.cxx
In file included from ../../../../../include/field.hxx:41,
                 from ../../../../../include/fieldperp.hxx:31,
                 from ../../../../../include/invert_laplace.hxx:41,
                 from serial_tri.hxx:32,
                 from serial_tri.cxx:28:
../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../../../../include/dataformat.hxx:40,
                 from ../../../../../include/datafile.hxx:20,
                 from ../../../../../include/globals.hxx:30,
                 from serial_tri.cxx:27:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  initialprofiles.cxx
In file included from ../../include/bout/scorepwrapper.hxx:5,
                 from ../../include/bout/deriv_store.hxx:37,
                 from ../../include/bout/mesh.hxx:49,
                 from initialprofiles.cxx:39:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ios:41,
                 from /usr/include/c++/13/ostream:40,
                 from /usr/include/c++/13/iostream:41,
                 from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57,
                 from /usr/include/openmpi-x86_64/mpi.h:2887,
                 from ../../include/bout/mesh.hxx:46:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  serial_band.cxx
In file included from ../../../../../include/field.hxx:41,
                 from ../../../../../include/fieldperp.hxx:31,
                 from ../../../../../include/invert_laplace.hxx:41,
                 from serial_band.hxx:32,
                 from serial_band.cxx:28:
../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../../../../include/dataformat.hxx:40,
                 from ../../../../../include/datafile.hxx:20,
                 from ../../../../../include/globals.hxx:30,
                 from serial_band.cxx:27:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  vecops.cxx
In file included from ../../include/bout/scorepwrapper.hxx:5,
                 from ../../include/bout/deriv_store.hxx:37,
                 from ../../include/bout/mesh.hxx:49,
                 from vecops.cxx:27:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ios:41,
                 from /usr/include/c++/13/ostream:40,
                 from /usr/include/c++/13/iostream:41,
                 from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57,
                 from /usr/include/openmpi-x86_64/mpi.h:2887,
                 from ../../include/bout/mesh.hxx:46:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  pdd.cxx
In file included from ../../../../../include/bout/bout_enum_class.hxx:27,
                 from ../../../../../include/fft.hxx:33,
                 from pdd.cxx:34:
../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from ../../../../../include/boutexception.hxx:7,
                 from pdd.cxx:33:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  spt.cxx
  Compiling  vector2d.cxx
In file included from ../../../../../include/bout/scorepwrapper.hxx:5,
                 from ../../../../../include/bout/deriv_store.hxx:37,
                 from ../../../../../include/bout/mesh.hxx:49,
                 from spt.cxx:35:
../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ios:41,
                 from /usr/include/c++/13/ostream:40,
                 from /usr/include/c++/13/iostream:41,
                 from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57,
                 from /usr/include/openmpi-x86_64/mpi.h:2887,
                 from ../../../../../include/bout/mesh.hxx:46:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
In file included from ../../include/field.hxx:41,
                 from ../../include/field2d.hxx:34,
                 from ../../include/vector2d.hxx:40,
                 from vector2d.cxx:33:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../include/dataformat.hxx:40,
                 from ../../include/datafile.hxx:20,
                 from ../../include/globals.hxx:30,
                 from vector2d.cxx:31:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  vector3d.cxx
In file included from ../../include/field.hxx:41,
                 from ../../include/field3d.hxx:30,
                 from ../../include/vector3d.hxx:37,
                 from vector3d.cxx:33:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../include/dataformat.hxx:40,
                 from ../../include/datafile.hxx:20,
                 from ../../include/globals.hxx:30,
                 from vector3d.cxx:31:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  petsc_laplace.cxx
In file included from ../../../../../include/utils.hxx:38,
                 from ../../../../../include/options.hxx:45,
                 from petsc_laplace.hxx:66,
                 from petsc_laplace.cxx:28:
../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../../../../include/dataformat.hxx:40,
                 from ../../../../../include/datafile.hxx:20,
                 from ../../../../../include/globals.hxx:30,
                 from petsc_laplace.hxx:63:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  where.cxx
In file included from ../../include/bout/scorepwrapper.hxx:5,
                 from ../../include/bout/deriv_store.hxx:37,
                 from ../../include/bout/mesh.hxx:49,
                 from where.cxx:26:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ios:41,
                 from /usr/include/c++/13/ostream:40,
                 from /usr/include/c++/13/iostream:41,
                 from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57,
                 from /usr/include/openmpi-x86_64/mpi.h:2887,
                 from ../../include/bout/mesh.hxx:46:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  globalfield.cxx
  Compiling  mumps_laplace.cxx
In file included from ../../include/bout/scorepwrapper.hxx:5,
                 from ../../include/bout/deriv_store.hxx:37,
                 from ../../include/bout/mesh.hxx:49,
                 from ../../include/bout/globalfield.hxx:12,
                 from globalfield.cxx:2:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ios:41,
                 from /usr/include/c++/13/ostream:40,
                 from /usr/include/c++/13/iostream:41,
                 from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57,
                 from /usr/include/openmpi-x86_64/mpi.h:2887,
                 from ../../include/bout/mesh.hxx:46:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
In file included from ../../../../../include/field.hxx:41,
                 from ../../../../../include/fieldperp.hxx:31,
                 from ../../../../../include/invert_laplace.hxx:41,
                 from mumps_laplace.hxx:31,
                 from mumps_laplace.cxx:26:
../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../../../../include/field.hxx:34:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  cyclic_laplace.cxx
In file included from ../../../../../include/bout/scorepwrapper.hxx:5,
                 from ../../../../../include/bout/deriv_store.hxx:37,
                 from ../../../../../include/bout/mesh.hxx:49,
                 from cyclic_laplace.cxx:38:
../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../../../../include/dataformat.hxx:40,
                 from ../../../../../include/datafile.hxx:20,
                 from ../../../../../include/globals.hxx:30,
                 from cyclic_laplace.cxx:36:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  generated_fieldops.cxx
In file included from ../../include/bout/scorepwrapper.hxx:5,
                 from ../../include/bout/deriv_store.hxx:37,
                 from ../../include/bout/mesh.hxx:49,
                 from generated_fieldops.cxx:2:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ios:41,
                 from /usr/include/c++/13/ostream:40,
                 from /usr/include/c++/13/iostream:41,
                 from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57,
                 from /usr/include/openmpi-x86_64/mpi.h:2887,
                 from ../../include/bout/mesh.hxx:46:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  shoot_laplace.cxx
In file included from ../../../../../include/field.hxx:41,
                 from ../../../../../include/fieldperp.hxx:31,
                 from ../../../../../include/invert_laplace.hxx:41,
                 from shoot_laplace.hxx:33,
                 from shoot_laplace.cxx:34:
../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../../../../include/field.hxx:34:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  boutmesh.cxx
In file included from ../../../../include/bout/scorepwrapper.hxx:5,
                 from ../../../../include/bout/deriv_store.hxx:37,
                 from ../../../../include/bout/mesh.hxx:49,
                 from boutmesh.hxx:7,
                 from boutmesh.cxx:36:
../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ios:41,
                 from /usr/include/c++/13/ostream:40,
                 from /usr/include/c++/13/iostream:41,
                 from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57,
                 from /usr/include/openmpi-x86_64/mpi.h:2887,
                 from boutmesh.hxx:5:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  multigrid_laplace.cxx
In file included from ../../../../../include/utils.hxx:38,
                 from ../../../../../include/options.hxx:45,
                 from multigrid_laplace.hxx:38,
                 from multigrid_laplace.cxx:30:
../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ios:41,
                 from /usr/include/c++/13/ostream:40,
                 from /usr/include/c++/13/iostream:41,
                 from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57,
                 from /usr/include/openmpi-x86_64/mpi.h:2887,
                 from multigrid_laplace.hxx:34:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../../../include/bout/array.hxx:31,
                 from ../../../../include/utils.hxx:36,
                 from ../../../../include/options.hxx:45,
                 from ../../../../include/bout/deriv_store.hxx:42:
In member function 'std::__shared_ptr<ArrayData<double>, (__gnu_cxx::_Lock_policy)2>::operator bool() const',
    inlined from 'std::operator==<ArrayData<double> >(std::shared_ptr<ArrayData<double> > const&, decltype(nullptr))bool' at /usr/include/c++/13/bits/shared_ptr.h:562:14,
    inlined from 'Array<double, ArrayData<double> >::empty() const' at ../../../../include/bout/array.hxx:202:16,
    inlined from 'Field3D::isAllocated() const' at ../../../../include/field3d.hxx:206:48,
    inlined from 'BoutMesh::pack_data(std::vector<FieldData*, std::allocator<FieldData*> > const&, int, int, int, int, double*)' at boutmesh.cxx:2029:7:
/usr/include/c++/13/bits/shared_ptr_base.h:1670:16: warning: potential null pointer dereference [-Wnull-dereference]
 1670 |       { return _M_ptr != nullptr; }
      |                ^~~~~~
In member function 'std::__shared_ptr<ArrayData<double>, (__gnu_cxx::_Lock_policy)2>::operator bool() const',
    inlined from 'std::operator==<ArrayData<double> >(std::shared_ptr<ArrayData<double> > const&, decltype(nullptr))bool' at /usr/include/c++/13/bits/shared_ptr.h:562:14,
    inlined from 'Array<double, ArrayData<double> >::empty() const' at ../../../../include/bout/array.hxx:202:16,
    inlined from 'Field2D::isAllocated() const' at ../../../../include/field2d.hxx:104:48,
    inlined from 'BoutMesh::pack_data(std::vector<FieldData*, std::allocator<FieldData*> > const&, int, int, int, int, double*)' at boutmesh.cxx:2040:7:
/usr/include/c++/13/bits/shared_ptr_base.h:1670:16: warning: potential null pointer dereference [-Wnull-dereference]
 1670 |       { return _M_ptr != nullptr; }
      |                ^~~~~~
  Compiling  multigrid_alg.cxx
In file included from ../../../../../include/utils.hxx:38,
                 from ../../../../../include/options.hxx:45,
                 from multigrid_laplace.hxx:38,
                 from multigrid_alg.cxx:30:
../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ios:41,
                 from /usr/include/c++/13/ostream:40,
                 from /usr/include/c++/13/iostream:41,
                 from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57,
                 from /usr/include/openmpi-x86_64/mpi.h:2887,
                 from multigrid_laplace.hxx:34:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  shiftedmetric.cxx
In file included from ../../../include/bout/scorepwrapper.hxx:5,
                 from ../../../include/bout/deriv_store.hxx:37,
                 from ../../../include/bout/mesh.hxx:49,
                 from shiftedmetric.cxx:10:
../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ios:41,
                 from /usr/include/c++/13/ostream:40,
                 from /usr/include/c++/13/iostream:41,
                 from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57,
                 from /usr/include/openmpi-x86_64/mpi.h:2887,
                 from ../../../include/bout/mesh.hxx:46:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  multigrid_solver.cxx
In file included from ../../../../../include/utils.hxx:38,
                 from ../../../../../include/options.hxx:45,
                 from multigrid_laplace.hxx:38,
                 from multigrid_solver.cxx:30:
../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ios:41,
                 from /usr/include/c++/13/ostream:40,
                 from /usr/include/c++/13/iostream:41,
                 from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57,
                 from /usr/include/openmpi-x86_64/mpi.h:2887,
                 from multigrid_laplace.hxx:34:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  naulin_laplace.cxx
In file included from ../../../../../include/bout/scorepwrapper.hxx:5,
                 from ../../../../../include/bout/deriv_store.hxx:37,
                 from ../../../../../include/bout/mesh.hxx:49,
                 from naulin_laplace.cxx:140:
../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from ../../../../../include/boutexception.hxx:7,
                 from naulin_laplace.cxx:139:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  fci.cxx
In file included from ../../../include/field.hxx:41,
                 from ../../../include/field3d.hxx:30,
                 from ../../../include/bout/paralleltransform.hxx:10,
                 from fci.hxx:29,
                 from fci.cxx:39:
../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../../include/field.hxx:34:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  invert_laplace.cxx
  Compiling  identity.cxx
In file included from ../../../include/bout/scorepwrapper.hxx:5,
                 from ../../../include/bout/deriv_store.hxx:37,
                 from ../../../include/bout/mesh.hxx:49,
                 from invert_laplace.cxx:34:
../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ios:41,
                 from /usr/include/c++/13/ostream:40,
                 from /usr/include/c++/13/iostream:41,
                 from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57,
                 from /usr/include/openmpi-x86_64/mpi.h:2887,
                 from ../../../include/bout/mesh.hxx:46:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
In file included from ../../../include/bout/scorepwrapper.hxx:5,
                 from ../../../include/bout/deriv_store.hxx:37,
                 from ../../../include/bout/mesh.hxx:49,
                 from identity.cxx:9:
../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ios:41,
                 from /usr/include/c++/13/ostream:40,
                 from /usr/include/c++/13/iostream:41,
                 from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57,
                 from /usr/include/openmpi-x86_64/mpi.h:2887,
                 from ../../../include/bout/mesh.hxx:46:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
invert_laplace.cxx: In constructor 'Laplacian::Laplacian(Options*, CELL_LOC, Mesh*)':
invert_laplace.cxx:100:24: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations]
  100 |     Laplacian::setFlags(flags);
      |     ~~~~~~~~~~~~~~~~~~~^~~~~~~
In file included from invert_laplace.cxx:36:
../../../include/invert_laplace.hxx:189:16: note: declared here
  189 |   virtual void setFlags(int f);
      |                ^~~~~~~~
invert_laplace.cxx: In function 'int invert_laplace(const FieldPerp&, FieldPerp&, int, const Field2D*, const Field2D*, const Field2D*)':
invert_laplace.cxx:770:16: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations]
  770 |   lap->setFlags(flags);
      |   ~~~~~~~~~~~~~^~~~~~~
../../../include/invert_laplace.hxx:189:16: note: declared here
  189 |   virtual void setFlags(int f);
      |                ^~~~~~~~
invert_laplace.cxx: In function 'int invert_laplace(const Field3D&, Field3D&, int, const Field2D*, const Field2D*, const Field2D*)':
invert_laplace.cxx:800:16: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations]
  800 |   lap->setFlags(flags);
      |   ~~~~~~~~~~~~~^~~~~~~
../../../include/invert_laplace.hxx:189:16: note: declared here
  189 |   virtual void setFlags(int f);
      |                ^~~~~~~~
invert_laplace.cxx: In function 'const Field3D invert_laplace(const Field3D&, int, const Field2D*, const Field2D*, const Field2D*)':
invert_laplace.cxx:831:16: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations]
  831 |   lap->setFlags(flags);
      |   ~~~~~~~~~~~~~^~~~~~~
../../../include/invert_laplace.hxx:189:16: note: declared here
  189 |   virtual void setFlags(int f);
      |                ^~~~~~~~
  Compiling  gridfromoptions.cxx
In file included from ../../../include/utils.hxx:38,
                 from ../../../include/options.hxx:45,
                 from ../../../include/bout/griddata.hxx:31,
                 from gridfromoptions.cxx:2:
../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/stdexcept:38,
                 from /usr/include/c++/13/system_error:43,
                 from /usr/include/c++/13/bits/ios_base.h:46,
                 from /usr/include/c++/13/streambuf:43,
                 from ../../../include/multiostream.hxx:4,
                 from ../../../include/output.hxx:32,
                 from ../../../include/options.hxx:44:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  laplacefactory.cxx
In file included from ../../../include/field.hxx:41,
                 from ../../../include/fieldperp.hxx:31,
                 from ../../../include/invert_laplace.hxx:41,
                 from laplacefactory.hxx:7,
                 from laplacefactory.cxx:6:
../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../../include/dataformat.hxx:40,
                 from ../../../include/datafile.hxx:20,
                 from ../../../include/globals.hxx:30,
                 from laplacefactory.cxx:2:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  gridfromfile.cxx
In file included from ../../../include/utils.hxx:38,
                 from ../../../include/options.hxx:45,
                 from ../../../include/bout/griddata.hxx:31,
                 from gridfromfile.cxx:3:
../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/stdexcept:38,
                 from /usr/include/c++/13/system_error:43,
                 from /usr/include/c++/13/bits/ios_base.h:46,
                 from /usr/include/c++/13/streambuf:43,
                 from ../../../include/multiostream.hxx:4,
                 from ../../../include/output.hxx:32,
                 from ../../../include/options.hxx:44:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  laplacexy.cxx
In file included from ../../../include/bout/scorepwrapper.hxx:5,
                 from ../../../include/bout/deriv_store.hxx:37,
                 from ../../../include/bout/mesh.hxx:49,
                 from ../../../include/bout/invert/laplacexy.hxx:69,
                 from laplacexy.cxx:6:
../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ios:41,
                 from /usr/include/c++/13/istream:40,
                 from /usr/include/c++/13/sstream:40,
                 from /usr/include/c++/13/complex:45,
                 from /usr/include/openmpi-x86_64/petsc/petscsystypes.h:315,
                 from /usr/include/openmpi-x86_64/petsc/petscsys.h:47,
                 from /usr/include/openmpi-x86_64/petsc/petscvec.h:9,
                 from /usr/include/openmpi-x86_64/petsc/petscmat.h:6,
                 from /usr/include/openmpi-x86_64/petsc/petscpc.h:6,
                 from /usr/include/openmpi-x86_64/petsc/petscksp.h:6,
                 from laplacexy.cxx:4:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  bilinear.cxx
In file included from ../../../include/bout/scorepwrapper.hxx:5,
                 from ../../../include/bout/deriv_store.hxx:37,
                 from ../../../include/bout/mesh.hxx:49,
                 from bilinear.cxx:23:
../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ios:41,
                 from /usr/include/c++/13/ostream:40,
                 from /usr/include/c++/13/iostream:41,
                 from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57,
                 from /usr/include/openmpi-x86_64/mpi.h:2887,
                 from ../../../include/bout/mesh.hxx:46:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  hermite_spline.cxx
  Compiling  laplacexz-cyclic.cxx
In file included from ../../../include/field.hxx:41,
                 from ../../../include/field3d.hxx:30,
                 from ../../../include/interpolation.hxx:31,
                 from hermite_spline.cxx:24:
../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../../include/dataformat.hxx:40,
                 from ../../../include/datafile.hxx:20,
                 from ../../../include/globals.hxx:30,
                 from hermite_spline.cxx:23:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
In file included from ../../../../../include/utils.hxx:38,
                 from ../../../../../include/options.hxx:45,
                 from ../../../../../include/bout/invert/laplacexz.hxx:34,
                 from laplacexz-cyclic.hxx:2,
                 from laplacexz-cyclic.cxx:1:
../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/stdexcept:38,
                 from /usr/include/c++/13/system_error:43,
                 from /usr/include/c++/13/bits/ios_base.h:46,
                 from /usr/include/c++/13/streambuf:43,
                 from ../../../../../include/multiostream.hxx:4,
                 from ../../../../../include/output.hxx:32,
                 from ../../../../../include/options.hxx:44:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  monotonic_hermite_spline.cxx
In file included from ../../../include/field.hxx:41,
                 from ../../../include/field3d.hxx:30,
                 from ../../../include/interpolation.hxx:31,
                 from monotonic_hermite_spline.cxx:24:
../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../../include/dataformat.hxx:40,
                 from ../../../include/datafile.hxx:20,
                 from ../../../include/globals.hxx:30,
                 from monotonic_hermite_spline.cxx:23:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  laplacexz-petsc.cxx
In file included from ../../../../../include/utils.hxx:38,
                 from ../../../../../include/options.hxx:45,
                 from ../../../../../include/bout/invert/laplacexz.hxx:34,
                 from laplacexz-petsc.hxx:12,
                 from laplacexz-petsc.cxx:11:
../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/stdexcept:38,
                 from /usr/include/c++/13/system_error:43,
                 from /usr/include/c++/13/bits/ios_base.h:46,
                 from /usr/include/c++/13/streambuf:43,
                 from ../../../../../include/multiostream.hxx:4,
                 from ../../../../../include/output.hxx:32,
                 from ../../../../../include/options.hxx:44:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  lagrange_4pt.cxx
In file included from ../../../include/bout/scorepwrapper.hxx:5,
                 from ../../../include/bout/deriv_store.hxx:37,
                 from ../../../include/bout/mesh.hxx:49,
                 from lagrange_4pt.cxx:23:
../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ios:41,
                 from /usr/include/c++/13/ostream:40,
                 from /usr/include/c++/13/iostream:41,
                 from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57,
                 from /usr/include/openmpi-x86_64/mpi.h:2887,
                 from ../../../include/bout/mesh.hxx:46:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  laplacexz.cxx
In file included from ../../../include/utils.hxx:38,
                 from ../../../include/options.hxx:45,
                 from ../../../include/bout/invert/laplacexz.hxx:34,
                 from impls/cyclic/laplacexz-cyclic.hxx:2,
                 from laplacexz.cxx:1:
../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/stdexcept:38,
                 from /usr/include/c++/13/system_error:43,
                 from /usr/include/c++/13/bits/ios_base.h:46,
                 from /usr/include/c++/13/streambuf:43,
                 from ../../../include/multiostream.hxx:4,
                 from ../../../include/output.hxx:32,
                 from ../../../include/options.hxx:44:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  interpolation_factory.cxx
In file included from ../../../include/field.hxx:41,
                 from ../../../include/field3d.hxx:30,
                 from ../../../include/interpolation.hxx:31,
                 from ../../../include/interpolation_factory.hxx:4,
                 from interpolation_factory.cxx:1:
../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../../include/field.hxx:34:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  fft_fftw.cxx
In file included from ../../include/utils.hxx:38,
                 from ../../include/options.hxx:45,
                 from fft_fftw.cxx:29:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../include/dataformat.hxx:40,
                 from ../../include/datafile.hxx:20,
                 from ../../include/globals.hxx:30,
                 from fft_fftw.cxx:28:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  difops.cxx
In file included from ../../include/utils.hxx:38,
                 from ../../include/options.hxx:45,
                 from ../../include/bout/solver.hxx:42,
                 from difops.cxx:27:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../include/dataformat.hxx:40,
                 from ../../include/datafile.hxx:20,
                 from ../../include/globals.hxx:30,
                 from difops.cxx:26:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  lapack_routines.cxx
In file included from ../../include/utils.hxx:38,
                 from lapack_routines.cxx:41:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../include/dataformat.hxx:40,
                 from ../../include/datafile.hxx:20,
                 from ../../include/globals.hxx:30,
                 from lapack_routines.cxx:38:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  physicsmodel.cxx
  Compiling  interpolation.cxx
In file included from ../../include/field.hxx:41,
                 from ../../include/field3d.hxx:30,
                 from ../../include/difops.hxx:39,
                 from ../../include/bout.hxx:41,
                 from ../../include/bout/physicsmodel.hxx:40,
                 from physicsmodel.cxx:32:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ios:41,
                 from /usr/include/c++/13/ostream:40,
                 from /usr/include/c++/13/iostream:41,
                 from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57,
                 from /usr/include/openmpi-x86_64/mpi.h:2887,
                 from ../../include/boutcomm.hxx:33,
                 from ../../include/bout.hxx:39:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
In file included from ../../include/field.hxx:41,
                 from ../../include/field3d.hxx:30,
                 from ../../include/interpolation.hxx:31,
                 from interpolation.cxx:27:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../include/dataformat.hxx:40,
                 from ../../include/datafile.hxx:20,
                 from ../../include/globals.hxx:30,
                 from interpolation.cxx:26:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  mesh.cxx
In file included from ../../include/bout/scorepwrapper.hxx:5,
                 from ../../include/bout/deriv_store.hxx:37,
                 from ../../include/bout/mesh.hxx:49,
                 from mesh.cxx:3:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../include/dataformat.hxx:40,
                 from ../../include/datafile.hxx:20,
                 from ../../include/globals.hxx:30,
                 from mesh.cxx:2:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  smoothing.cxx
In file included from ../../include/bout/scorepwrapper.hxx:5,
                 from ../../include/bout/deriv_store.hxx:37,
                 from ../../include/bout/mesh.hxx:49,
                 from smoothing.cxx:35:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ios:41,
                 from /usr/include/c++/13/ostream:40,
                 from /usr/include/c++/13/iostream:41,
                 from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57,
                 from /usr/include/openmpi-x86_64/mpi.h:2887,
                 from ../../include/bout/mesh.hxx:46:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  sourcex.cxx
In file included from ../../include/bout/scorepwrapper.hxx:5,
                 from ../../include/bout/deriv_store.hxx:37,
                 from ../../include/bout/mesh.hxx:49,
                 from sourcex.cxx:8:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../include/dataformat.hxx:40,
                 from ../../include/datafile.hxx:20,
                 from ../../include/globals.hxx:30,
                 from sourcex.cxx:5:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  gyro_average.cxx
In file included from ../../include/bout/scorepwrapper.hxx:5,
                 from ../../include/bout/deriv_store.hxx:37,
                 from ../../include/bout/mesh.hxx:49,
                 from gyro_average.cxx:30:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ios:41,
                 from /usr/include/c++/13/ostream:40,
                 from /usr/include/c++/13/iostream:41,
                 from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57,
                 from /usr/include/openmpi-x86_64/mpi.h:2887,
                 from ../../include/bout/mesh.hxx:46:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
gyro_average.cxx: In function 'Field3D gyroPade0(const Field3D&, BoutReal, int)':
gyro_average.cxx:170:16: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations]
  170 |   lap->setFlags(flags);
      |   ~~~~~~~~~~~~~^~~~~~~
In file included from ../../include/gyro_average.hxx:36,
                 from gyro_average.cxx:34:
../../include/invert_laplace.hxx:189:16: note: declared here
  189 |   virtual void setFlags(int f);
      |                ^~~~~~~~
gyro_average.cxx: In function 'Field3D gyroPade0(const Field3D&, const Field2D&, int)':
gyro_average.cxx:187:16: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations]
  187 |   lap->setFlags(flags);
      |   ~~~~~~~~~~~~~^~~~~~~
../../include/invert_laplace.hxx:189:16: note: declared here
  189 |   virtual void setFlags(int f);
      |                ^~~~~~~~
gyro_average.cxx: In function 'Field3D gyroPade0(const Field3D&, const Field3D&, int)':
gyro_average.cxx:194:19: warning: 'Field3D gyroPade0(const Field3D&, const Field2D&, int)' is deprecated: Please use version with separate inner_boundary_flags and outer_boundary_flags [-Wdeprecated-declarations]
  194 |   return gyroPade0(f, DC(rho), flags);
      |          ~~~~~~~~~^~~~~~~~~~~~~~~~~~~
gyro_average.cxx:175:9: note: declared here
  175 | Field3D gyroPade0(const Field3D& f, const Field2D& rho, int flags) {
      |         ^~~~~~~~~
gyro_average.cxx: In function 'Field3D gyroPade1(const Field3D&, BoutReal, int)':
gyro_average.cxx:209:16: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations]
  209 |   lap->setFlags(flags);
      |   ~~~~~~~~~~~~~^~~~~~~
../../include/invert_laplace.hxx:189:16: note: declared here
  189 |   virtual void setFlags(int f);
      |                ^~~~~~~~
gyro_average.cxx: In function 'Field3D gyroPade1(const Field3D&, const Field2D&, int)':
gyro_average.cxx:226:16: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations]
  226 |   lap->setFlags(flags);
      |   ~~~~~~~~~~~~~^~~~~~~
../../include/invert_laplace.hxx:189:16: note: declared here
  189 |   virtual void setFlags(int f);
      |                ^~~~~~~~
gyro_average.cxx: In function 'Field3D gyroPade1(const Field3D&, const Field3D&, int)':
gyro_average.cxx:232:19: warning: 'Field3D gyroPade1(const Field3D&, const Field2D&, int)' is deprecated: Please use version with separate inner_boundary_flags and outer_boundary_flags [-Wdeprecated-declarations]
  232 |   return gyroPade1(f, DC(rho), flags);
      |          ~~~~~~~~~^~~~~~~~~~~~~~~~~~~
gyro_average.cxx:214:9: note: declared here
  214 | Field3D gyroPade1(const Field3D& f, const Field2D& rho, int flags) {
      |         ^~~~~~~~~
gyro_average.cxx: In function 'Field2D gyroPade1(const Field2D&, const Field2D&, int)':
gyro_average.cxx:238:18: warning: 'Field3D gyroPade1(const Field3D&, const Field2D&, int)' is deprecated: Please use version with separate inner_boundary_flags and outer_boundary_flags [-Wdeprecated-declarations]
  238 |   tmp = gyroPade1(tmp, rho, flags);
      |         ~~~~~~~~~^~~~~~~~~~~~~~~~~
gyro_average.cxx:214:9: note: declared here
  214 | Field3D gyroPade1(const Field3D& f, const Field2D& rho, int flags) {
      |         ^~~~~~~~~
gyro_average.cxx: In function 'Field3D gyroPade2(const Field3D&, BoutReal, int)':
gyro_average.cxx:243:39: warning: 'Field3D gyroPade1(const Field3D&, BoutReal, int)' is deprecated: Please use version with separate inner_boundary_flags and outer_boundary_flags [-Wdeprecated-declarations]
  243 |   Field3D result = gyroPade1(gyroPade1(f, rho, flags), rho, flags);
      |                              ~~~~~~~~~^~~~~~~~~~~~~~~
gyro_average.cxx:197:9: note: declared here
  197 | Field3D gyroPade1(const Field3D& f, BoutReal rho, int flags) {
      |         ^~~~~~~~~
gyro_average.cxx:243:29: warning: 'Field3D gyroPade1(const Field3D&, BoutReal, int)' is deprecated: Please use version with separate inner_boundary_flags and outer_boundary_flags [-Wdeprecated-declarations]
  243 |   Field3D result = gyroPade1(gyroPade1(f, rho, flags), rho, flags);
      |                    ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gyro_average.cxx:197:9: note: declared here
  197 | Field3D gyroPade1(const Field3D& f, BoutReal rho, int flags) {
      |         ^~~~~~~~~
gyro_average.cxx: In function 'Field3D gyroPade2(const Field3D&, const Field2D&, int)':
gyro_average.cxx:251:39: warning: 'Field3D gyroPade1(const Field3D&, const Field2D&, int)' is deprecated: Please use version with separate inner_boundary_flags and outer_boundary_flags [-Wdeprecated-declarations]
  251 |   Field3D result = gyroPade1(gyroPade1(f, rho, flags), rho, flags);
      |                              ~~~~~~~~~^~~~~~~~~~~~~~~
gyro_average.cxx:214:9: note: declared here
  214 | Field3D gyroPade1(const Field3D& f, const Field2D& rho, int flags) {
      |         ^~~~~~~~~
gyro_average.cxx:251:29: warning: 'Field3D gyroPade1(const Field3D&, const Field2D&, int)' is deprecated: Please use version with separate inner_boundary_flags and outer_boundary_flags [-Wdeprecated-declarations]
  251 |   Field3D result = gyroPade1(gyroPade1(f, rho, flags), rho, flags);
      |                    ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gyro_average.cxx:214:9: note: declared here
  214 | Field3D gyroPade1(const Field3D& f, const Field2D& rho, int flags) {
      |         ^~~~~~~~~
gyro_average.cxx: In function 'Field3D gyroPade2(const Field3D&, const Field3D&, int)':
gyro_average.cxx:260:19: warning: 'Field3D gyroPade2(const Field3D&, const Field2D&, int)' is deprecated: Please use version with separate inner_boundary_flags and outer_boundary_flags [-Wdeprecated-declarations]
  260 |   return gyroPade2(f, DC(rho), flags);
      |          ~~~~~~~~~^~~~~~~~~~~~~~~~~~~
gyro_average.cxx:250:9: note: declared here
  250 | Field3D gyroPade2(const Field3D& f, const Field2D& rho, int flags) {
      |         ^~~~~~~~~
  Compiling  boundary_standard.cxx
In file included from ../../include/bout/scorepwrapper.hxx:5,
                 from ../../include/bout/deriv_store.hxx:37,
                 from ../../include/bout/mesh.hxx:49,
                 from boundary_standard.cxx:1:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ios:41,
                 from /usr/include/c++/13/ostream:40,
                 from /usr/include/c++/13/iostream:41,
                 from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57,
                 from /usr/include/openmpi-x86_64/mpi.h:2887,
                 from ../../include/bout/mesh.hxx:46:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  snb.cxx
In file included from ../../include/field.hxx:41,
                 from ../../include/field3d.hxx:30,
                 from ../../include/invert_parderiv.hxx:34,
                 from ../../include/bout/snb.hxx:1,
                 from snb.cxx:4:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../include/field.hxx:34:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  arkode.cxx
In file included from ../../../../include/utils.hxx:38,
                 from ../../../../include/options.hxx:45,
                 from ../../../../include/bout/solver.hxx:42,
                 from arkode.hxx:35,
                 from arkode.cxx:28:
../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from ../../../../include/boutexception.hxx:7,
                 from ../../../../include/bout/solver.hxx:40:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  boundary_factory.cxx
In file included from ../../include/field.hxx:41,
                 from ../../include/field2d.hxx:34,
                 from ../../include/boundary_op.hxx:9,
                 from ../../include/boundary_factory.hxx:7,
                 from boundary_factory.cxx:2:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../include/dataformat.hxx:40,
                 from ../../include/datafile.hxx:20,
                 from ../../include/globals.hxx:30,
                 from boundary_factory.cxx:1:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  pvode.cxx
In file included from ../../../../include/utils.hxx:38,
                 from ../../../../include/options.hxx:45,
                 from ../../../../include/bout/solver.hxx:42,
                 from pvode.hxx:34,
                 from pvode.cxx:26:
../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from ../../../../include/boutexception.hxx:7,
                 from ../../../../include/bout/solver.hxx:40:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  boundary_region.cxx
In file included from ../../include/bout/scorepwrapper.hxx:5,
                 from ../../include/bout/deriv_store.hxx:37,
                 from ../../include/bout/mesh.hxx:49,
                 from boundary_region.cxx:2:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ios:41,
                 from /usr/include/c++/13/ostream:40,
                 from /usr/include/c++/13/iostream:41,
                 from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57,
                 from /usr/include/openmpi-x86_64/mpi.h:2887,
                 from ../../include/bout/mesh.hxx:46:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  cvode.cxx
In file included from ../../../../include/utils.hxx:38,
                 from ../../../../include/options.hxx:45,
                 from ../../../../include/bout/solver.hxx:42,
                 from cvode.hxx:34,
                 from cvode.cxx:27:
../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from ../../../../include/boutexception.hxx:7,
                 from ../../../../include/bout/solver.hxx:40:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  meshfactory.cxx
In file included from ../../include/bout/scorepwrapper.hxx:5,
                 from ../../include/bout/deriv_store.hxx:37,
                 from ../../include/bout/mesh.hxx:49,
                 from meshfactory.hxx:7,
                 from meshfactory.cxx:2:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ios:41,
                 from /usr/include/c++/13/ostream:40,
                 from /usr/include/c++/13/iostream:41,
                 from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57,
                 from /usr/include/openmpi-x86_64/mpi.h:2887,
                 from ../../include/bout/mesh.hxx:46:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  surfaceiter.cxx
In file included from ../../include/bout/scorepwrapper.hxx:5,
                 from ../../include/bout/deriv_store.hxx:37,
                 from ../../include/bout/mesh.hxx:49,
                 from ../../include/bout/surfaceiter.hxx:10,
                 from surfaceiter.cxx:2:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ios:41,
                 from /usr/include/c++/13/ostream:40,
                 from /usr/include/c++/13/iostream:41,
                 from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57,
                 from /usr/include/openmpi-x86_64/mpi.h:2887,
                 from ../../include/bout/mesh.hxx:46:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  ida.cxx
In file included from ../../../../include/utils.hxx:38,
                 from ../../../../include/options.hxx:45,
                 from ../../../../include/bout/solver.hxx:42,
                 from ida.hxx:35,
                 from ida.cxx:30:
../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from ../../../../include/boutexception.hxx:7,
                 from ../../../../include/bout/solver.hxx:40:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  coordinates.cxx
In file included from ../../include/field.hxx:41,
                 from ../../include/field3d.hxx:30,
                 from ../../include/bout/paralleltransform.hxx:10,
                 from ../../include/bout/coordinates.hxx:36,
                 from coordinates.cxx:9:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from ../../include/bout/../boutexception.hxx:7,
                 from ../../include/bout/assert.hxx:20,
                 from coordinates.cxx:7:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  petsc.cxx
In file included from ../../../../include/field.hxx:41,
                 from ../../../../include/field2d.hxx:34,
                 from petsc.hxx:36,
                 from petsc.cxx:27:
../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ios:41,
                 from /usr/include/c++/13/istream:40,
                 from /usr/include/c++/13/sstream:40,
                 from /usr/include/c++/13/complex:45,
                 from /usr/include/openmpi-x86_64/petsc/petscsystypes.h:315,
                 from /usr/include/openmpi-x86_64/petsc/petscsys.h:47,
                 from /usr/include/openmpi-x86_64/petsc/petscbag.h:4,
                 from /usr/include/openmpi-x86_64/petsc/petsc.h:5,
                 from petsc.hxx:34:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
petsc.cxx: In function 'PetscErrorCode PetscMonitor(TS, PetscInt, PetscReal, Vec, void*)':
petsc.cxx:838:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
  838 |     if (s->interpolate) ierr = TSInterpolate(ts,s->next_output,interpolatedX);CHKERRQ(ierr);
      |     ^~
In file included from /usr/include/openmpi-x86_64/petsc/petscsys.h:1207:
/usr/include/openmpi-x86_64/petsc/petscerror.h:336:24: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
  336 | #define PetscCall(...) do {                                                                    \
      |                        ^~
/usr/include/openmpi-x86_64/petsc/petscerror.h:368:22: note: in expansion of macro 'PetscCall'
  368 | #define CHKERRQ(...) PetscCall(__VA_ARGS__)
      |                      ^~~~~~~~~
petsc.cxx:838:79: note: in expansion of macro 'CHKERRQ'
  838 |     if (s->interpolate) ierr = TSInterpolate(ts,s->next_output,interpolatedX);CHKERRQ(ierr);
      |                                                                               ^~~~~~~
  Compiling  snes.cxx
In file included from ../../../../include/bout/bout_enum_class.hxx:27,
                 from snes.hxx:38,
                 from snes.cxx:4:
../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ios:41,
                 from /usr/include/c++/13/ostream:40,
                 from /usr/include/c++/13/iostream:41,
                 from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57,
                 from /usr/include/openmpi-x86_64/mpi.h:2887,
                 from snes.hxx:35:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  index_derivs.cxx
In file included from ../../include/bout/scorepwrapper.hxx:5,
                 from ../../include/bout/deriv_store.hxx:37,
                 from ../../include/bout/index_derivs.hxx:37,
                 from index_derivs.cxx:24:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ios:41,
                 from /usr/include/c++/13/ostream:40,
                 from /usr/include/c++/13/iostream:41,
                 from ../../include/bout/index_derivs.hxx:33:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  imex-bdf2.cxx
In file included from ../../../../include/utils.hxx:38,
                 from ../../../../include/options.hxx:45,
                 from ../../../../include/bout/solver.hxx:42,
                 from imex-bdf2.hxx:45,
                 from imex-bdf2.cxx:4:
../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ios:41,
                 from /usr/include/c++/13/ostream:40,
                 from /usr/include/c++/13/iostream:41,
                 from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57,
                 from /usr/include/openmpi-x86_64/mpi.h:2887,
                 from imex-bdf2.hxx:42:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  power.cxx
In file included from ../../../../include/utils.hxx:38,
                 from ../../../../include/options.hxx:45,
                 from ../../../../include/bout/solver.hxx:42,
                 from power.hxx:33,
                 from power.cxx:3:
../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ios:41,
                 from /usr/include/c++/13/ostream:40,
                 from /usr/include/c++/13/iostream:41,
                 from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57,
                 from /usr/include/openmpi-x86_64/mpi.h:2887,
                 from power.cxx:1:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  slepc.cxx
  Compiling  adams_bashforth.cxx
In file included from ../../../../include/utils.hxx:38,
                 from ../../../../include/options.hxx:45,
                 from ../../../../include/bout/solver.hxx:42,
                 from adams_bashforth.hxx:31,
                 from adams_bashforth.cxx:1:
../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from ../../../../include/boutexception.hxx:7,
                 from ../../../../include/bout/solver.hxx:40:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  karniadakis.cxx
In file included from ../../../../include/utils.hxx:38,
                 from ../../../../include/options.hxx:45,
                 from ../../../../include/bout/solver.hxx:42,
                 from karniadakis.hxx:41,
                 from karniadakis.cxx:39:
../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ios:41,
                 from /usr/include/c++/13/ostream:40,
                 from /usr/include/c++/13/iostream:41,
                 from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57,
                 from /usr/include/openmpi-x86_64/mpi.h:2887,
                 from karniadakis.hxx:38:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  rk4.cxx
In file included from ../../../../include/utils.hxx:38,
                 from ../../../../include/options.hxx:45,
                 from ../../../../include/bout/solver.hxx:42,
                 from rk4.hxx:36,
                 from rk4.cxx:2:
../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ios:41,
                 from /usr/include/c++/13/ostream:40,
                 from /usr/include/c++/13/iostream:41,
                 from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57,
                 from /usr/include/openmpi-x86_64/mpi.h:2887,
                 from rk4.hxx:33:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  euler.cxx
In file included from ../../../../include/utils.hxx:38,
                 from ../../../../include/options.hxx:45,
                 from ../../../../include/bout/solver.hxx:42,
                 from euler.hxx:36,
                 from euler.cxx:2:
../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ios:41,
                 from /usr/include/c++/13/ostream:40,
                 from /usr/include/c++/13/iostream:41,
                 from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57,
                 from /usr/include/openmpi-x86_64/mpi.h:2887,
                 from euler.hxx:33:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  rk3-ssp.cxx
In file included from ../../../../include/utils.hxx:38,
                 from ../../../../include/options.hxx:45,
                 from ../../../../include/bout/solver.hxx:42,
                 from rk3-ssp.hxx:42,
                 from rk3-ssp.cxx:2:
../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ios:41,
                 from /usr/include/c++/13/ostream:40,
                 from /usr/include/c++/13/iostream:41,
                 from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57,
                 from /usr/include/openmpi-x86_64/mpi.h:2887,
                 from rk3-ssp.hxx:39:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  rkf45.cxx
In file included from ../../../../../../include/utils.hxx:38,
                 from ../../../../../../include/options.hxx:45,
                 from ../../../../../../include/bout/rkscheme.hxx:39,
                 from rkf45.hxx:7,
                 from rkf45.cxx:1:
../../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/stdexcept:38,
                 from /usr/include/c++/13/system_error:43,
                 from /usr/include/c++/13/bits/ios_base.h:46,
                 from /usr/include/c++/13/streambuf:43,
                 from ../../../../../../include/multiostream.hxx:4,
                 from ../../../../../../include/output.hxx:32,
                 from ../../../../../../include/options.hxx:44:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  parallel_boundary_region.cxx
  Compiling  parallel_boundary_op.cxx
In file included from ../../include/bout/scorepwrapper.hxx:5,
                 from ../../include/bout/deriv_store.hxx:37,
                 from ../../include/bout/mesh.hxx:49,
                 from parallel_boundary_op.cxx:2:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ios:41,
                 from /usr/include/c++/13/ostream:40,
                 from /usr/include/c++/13/iostream:41,
                 from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57,
                 from /usr/include/openmpi-x86_64/mpi.h:2887,
                 from ../../include/bout/mesh.hxx:46:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  cashkarp.cxx
In file included from ../../../../../../include/utils.hxx:38,
                 from ../../../../../../include/options.hxx:45,
                 from ../../../../../../include/bout/rkscheme.hxx:39,
                 from cashkarp.hxx:7,
                 from cashkarp.cxx:1:
../../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/stdexcept:38,
                 from /usr/include/c++/13/system_error:43,
                 from /usr/include/c++/13/bits/ios_base.h:46,
                 from /usr/include/c++/13/streambuf:43,
                 from ../../../../../../include/multiostream.hxx:4,
                 from ../../../../../../include/output.hxx:32,
                 from ../../../../../../include/options.hxx:44:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  fv_ops.cxx
In file included from ../../include/bout/../field.hxx:41,
                 from ../../include/bout/../field3d.hxx:30,
                 from ../../include/bout/fv_ops.hxx:9,
                 from fv_ops.cxx:2:
../../include/bout/../msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/bout/../msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../include/bout/../dataformat.hxx:40,
                 from ../../include/bout/../datafile.hxx:20,
                 from ../../include/bout/../globals.hxx:30,
                 from ../../include/bout/fv_ops.hxx:8:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
fv_ops.cxx: In function 'FV::communicateFluxes(Field3D&)':
fv_ops.cxx:436:17: warning: 'xout' may be used uninitialized [-Wmaybe-uninitialized]
  436 |       mesh->wait(xout);
      |       ~~~~~~~~~~^~~~~~
fv_ops.cxx:408:22: note: 'xout' was declared here
  408 |     comm_handle xin, xout;
      |                      ^~~~
  Compiling  rk4simple.cxx
  Compiling  options_ini.cxx
In file included from ../../../../../../include/utils.hxx:38,
                 from ../../../../../../include/options.hxx:45,
                 from ../../../../../../include/bout/rkscheme.hxx:39,
                 from rk4simple.hxx:7,
                 from rk4simple.cxx:1:
../../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/stdexcept:38,
                 from /usr/include/c++/13/system_error:43,
                 from /usr/include/c++/13/bits/ios_base.h:46,
                 from /usr/include/c++/13/streambuf:43,
                 from ../../../../../../include/multiostream.hxx:4,
                 from ../../../../../../include/output.hxx:32,
                 from ../../../../../../include/options.hxx:44:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
In file included from ../../../include/utils.hxx:38,
                 from options_ini.cxx:52:
../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ios:41,
                 from /usr/include/c++/13/istream:40,
                 from /usr/include/c++/13/sstream:40,
                 from /usr/include/c++/13/complex:45,
                 from ../../../include/dcomplex.hxx:35,
                 from ../../../include/utils.hxx:33:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  rkf34.cxx
  Compiling  options_netcdf.cxx
In file included from ../../../../../../include/utils.hxx:38,
                 from ../../../../../../include/options.hxx:45,
                 from ../../../../../../include/bout/rkscheme.hxx:39,
                 from rkf34.hxx:7,
                 from rkf34.cxx:1:
../../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/stdexcept:38,
                 from /usr/include/c++/13/system_error:43,
                 from /usr/include/c++/13/bits/ios_base.h:46,
                 from /usr/include/c++/13/streambuf:43,
                 from ../../../../../../include/multiostream.hxx:4,
                 from ../../../../../../include/output.hxx:32,
                 from ../../../../../../include/options.hxx:44:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
In file included from ../../../include/utils.hxx:38,
                 from ../../../include/options.hxx:45,
                 from ../../../include/options_netcdf.hxx:44,
                 from options_netcdf.cxx:4:
../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/stdexcept:38,
                 from /usr/include/c++/13/system_error:43,
                 from /usr/include/c++/13/bits/ios_base.h:46,
                 from /usr/include/c++/13/streambuf:43,
                 from ../../../include/multiostream.hxx:4,
                 from ../../../include/output.hxx:32,
                 from ../../../include/options.hxx:44:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
In file included from /usr/include/openmpi-x86_64/ncFile.h:2,
                 from /usr/include/openmpi-x86_64/netcdf:16,
                 from options_netcdf.cxx:7:
/usr/include/openmpi-x86_64/ncGroup.h: At global scope:
/usr/include/openmpi-x86_64/ncGroup.h:18:14: warning: 'netCDF::file_id' defined but not used [-Wunused-variable]
   18 |   static int file_id;
      |              ^~~~~~~
  Compiling  rkgeneric.cxx
In file included from ../../../../include/utils.hxx:38,
                 from ../../../../include/options.hxx:45,
                 from ../../../../include/bout/solver.hxx:42,
                 from rkgeneric.hxx:34,
                 from rkgeneric.cxx:2:
../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ios:41,
                 from /usr/include/c++/13/ostream:40,
                 from /usr/include/c++/13/iostream:41,
                 from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57,
                 from /usr/include/openmpi-x86_64/mpi.h:2887,
                 from rkgeneric.hxx:31:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  bout_types.cxx
In file included from bout_types.cxx:4:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from ../../include/boutexception.hxx:7,
                 from bout_types.cxx:2:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  rkscheme.cxx
  Compiling  boutexception.cxx
In file included from boutexception.cxx:5:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ios:41,
                 from /usr/include/c++/13/ostream:40,
                 from /usr/include/c++/13/iostream:41,
                 from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57,
                 from /usr/include/openmpi-x86_64/mpi.h:2887,
                 from boutexception.cxx:1:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
In file included from ../../../../include/utils.hxx:38,
                 from ../../../../include/options.hxx:45,
                 from ../../../../include/bout/rkscheme.hxx:39,
                 from rkschemefactory.hxx:7,
                 from rkscheme.cxx:1:
../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/stdexcept:38,
                 from /usr/include/c++/13/system_error:43,
                 from /usr/include/c++/13/bits/ios_base.h:46,
                 from /usr/include/c++/13/streambuf:43,
                 from ../../../../include/multiostream.hxx:4,
                 from ../../../../include/output.hxx:32,
                 from ../../../../include/options.hxx:44:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  derivs.cxx
In file included from ../../include/field.hxx:41,
                 from ../../include/field2d.hxx:34,
                 from ../../include/derivs.hxx:32,
                 from derivs.cxx:42:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../include/dataformat.hxx:40,
                 from ../../include/datafile.hxx:20,
                 from ../../include/globals.hxx:30,
                 from derivs.cxx:41:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  rkschemefactory.cxx
In file included from ../../../../include/utils.hxx:38,
                 from ../../../../include/options.hxx:45,
                 from ../../../../include/bout/rkscheme.hxx:39,
                 from rkschemefactory.hxx:7,
                 from rkschemefactory.cxx:1:
../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/stdexcept:38,
                 from /usr/include/c++/13/system_error:43,
                 from /usr/include/c++/13/bits/ios_base.h:46,
                 from /usr/include/c++/13/streambuf:43,
                 from ../../../../include/multiostream.hxx:4,
                 from ../../../../include/output.hxx:32,
                 from ../../../../include/options.hxx:44:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  split-rk.cxx
  Compiling  msg_stack.cxx
In file included from msg_stack.cxx:28:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from ../../include/msg_stack.hxx:35:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
In file included from ../../../../include/utils.hxx:38,
                 from ../../../../include/options.hxx:45,
                 from ../../../../include/bout/solver.hxx:42,
                 from split-rk.hxx:36,
                 from split-rk.cxx:1:
../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from ../../../../include/boutexception.hxx:7,
                 from ../../../../include/bout/solver.hxx:40:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  options.cxx
In file included from ../../include/bout/scorepwrapper.hxx:5,
                 from ../../include/bout/deriv_store.hxx:37,
                 from ../../include/bout/mesh.hxx:49,
                 from ../../include/field_factory.hxx:32,
                 from options.cxx:2:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from ../../include/boutexception.hxx:7,
                 from options.cxx:1:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  solver.cxx
In file included from ../../include/utils.hxx:38,
                 from ../../include/options.hxx:45,
                 from ../../include/bout/solver.hxx:42,
                 from solver.cxx:23:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from ../../include/boutexception.hxx:7,
                 from ../../include/bout/solver.hxx:40:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  output.cxx
In file included from ../../include/utils.hxx:38,
                 from output.cxx:30:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/stdexcept:38,
                 from /usr/include/c++/13/system_error:43,
                 from /usr/include/c++/13/bits/ios_base.h:46,
                 from /usr/include/c++/13/streambuf:43,
                 from ../../include/multiostream.hxx:4,
                 from ../../include/output.hxx:32,
                 from output.cxx:29:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  utils.cxx
In file included from ../../include/utils.hxx:38,
                 from utils.cxx:26:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ios:41,
                 from /usr/include/c++/13/istream:40,
                 from /usr/include/c++/13/sstream:40,
                 from /usr/include/c++/13/complex:45,
                 from ../../include/dcomplex.hxx:35,
                 from ../../include/utils.hxx:33:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  optionsreader.cxx
In file included from ../../include/utils.hxx:38,
                 from ../../include/options.hxx:45,
                 from ../../include/optionsreader.hxx:37,
                 from optionsreader.cxx:1:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/stdexcept:38,
                 from /usr/include/c++/13/system_error:43,
                 from /usr/include/c++/13/bits/ios_base.h:46,
                 from /usr/include/c++/13/streambuf:43,
                 from ../../include/multiostream.hxx:4,
                 from ../../include/output.hxx:32,
                 from ../../include/options.hxx:44:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  solverfactory.cxx
In file included from impls/pvode/pvode.hxx:37,
                 from solverfactory.cxx:12:
../../include/pvode/nvector.h:93: warning: "PVEC_REAL_MPI_TYPE" redefined
   93 | #define PVEC_REAL_MPI_TYPE MPI_DOUBLE
      | 
In file included from /usr/include/openmpi-x86_64/nvector/nvector_parallel.h:44,
                 from impls/arkode/arkode.hxx:47,
                 from solverfactory.cxx:4:
/usr/include/openmpi-x86_64/sundials/sundials_mpi_types.h:38: note: this is the location of the previous definition
   38 | #define PVEC_REAL_MPI_TYPE    MPI_SUNREALTYPE
      | 
In file included from ../../include/utils.hxx:38,
                 from ../../include/options.hxx:45,
                 from ../../include/bout/solver.hxx:42,
                 from ../../include/bout/solverfactory.hxx:8,
                 from solverfactory.cxx:1:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from ../../include/boutexception.hxx:7,
                 from ../../include/bout/generic_factory.hxx:7,
                 from ../../include/bout/solverfactory.hxx:7:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  boutcomm.cxx
  Compiling  timer.cxx
In file included from ../../include/bout/sys/timer.hxx:11,
                 from timer.cxx:1:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/stdexcept:38,
                 from /usr/include/c++/13/system_error:43,
                 from /usr/include/c++/13/bits/ios_base.h:46,
                 from /usr/include/c++/13/iomanip:42,
                 from ../../include/bout/sys/timer.hxx:8:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  range.cxx
  Compiling  petsclib.cxx
In file included from ../../include/utils.hxx:38,
                 from ../../include/options.hxx:45,
                 from petsclib.cxx:5:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ios:41,
                 from /usr/include/c++/13/ostream:40,
                 from /usr/include/c++/13/iostream:41,
                 from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57,
                 from /usr/include/openmpi-x86_64/mpi.h:2887,
                 from ../../include/boutcomm.hxx:33,
                 from petsclib.cxx:4:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  bout++.cxx
In file included from ../include/field.hxx:41,
                 from ../include/field2d.hxx:34,
                 from ../include/boundary_op.hxx:9,
                 from ../include/boundary_factory.hxx:7,
                 from bout++.cxx:41:
../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../include/field.hxx:34:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  expressionparser.cxx
In file included from ../../include/utils.hxx:38,
                 from expressionparser.cxx:28:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from ../../include/bout/sys/expressionparser.hxx:33,
                 from expressionparser.cxx:25:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  slepclib.cxx
  Compiling  type_name.cxx
In file included from ../../include/field.hxx:41,
                 from ../../include/field2d.hxx:34,
                 from type_name.cxx:3:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../include/field.hxx:34:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  bout++-time.cxx
Creating libbout++.so
invert/laplace/impls/spt/spt.cxx: In member function '__ct_base ':
invert/laplace/impls/spt/spt.cxx:63:37: warning: argument 1 value '18446744073709551615' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
   63 |   alldata = new SPT_data[ye - ys + 1];
      |                                     ^
/usr/include/c++/13/new:128:26: note: in a call to allocation function 'operator new []' declared here
  128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
invert/laplace/impls/pdd/pdd.cxx: In member function 'solve':
invert/laplace/impls/pdd/pdd.cxx:83:38: warning: argument 1 value '18446744073709551615' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
   83 |       data = new PDD_data[ye - ys + 1];
      |                                      ^
/usr/include/c++/13/new:128:26: note: in a call to allocation function 'operator new []' declared here
  128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
Creating libbout++.so
src/invert/laplace/impls/spt/spt.cxx: In member function '__ct_base ':
src/invert/laplace/impls/spt/spt.cxx:63:37: warning: argument 1 value '18446744073709551615' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
   63 |   alldata = new SPT_data[ye - ys + 1];
      |                                     ^
/usr/include/c++/13/new:128:26: note: in a call to allocation function 'operator new []' declared here
  128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
src/invert/laplace/impls/pdd/pdd.cxx: In member function 'solve':
src/invert/laplace/impls/pdd/pdd.cxx:83:38: warning: argument 1 value '18446744073709551615' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
   83 |       data = new PDD_data[ye - ys + 1];
      |                                      ^
/usr/include/c++/13/new:128:26: note: in a call to allocation function 'operator new []' declared here
  128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
+ ls -l lib
total 87396
lrwxrwxrwx. 1 mockbuild mock       18 Jan 20 23:08 libbout++.so -> libbout++.so.4.4.0
-rwxr-xr-x. 1 mockbuild mock 79473176 Jan 20 23:08 libbout++.so.4.4.0
-rw-r--r--. 1 mockbuild mock  6728298 Jan 20 23:02 libpvode.a
lrwxrwxrwx. 1 mockbuild mock       17 Jan 20 23:08 libpvode.so -> libpvode.so.1.0.0
-rwxr-xr-x. 1 mockbuild mock   785368 Jan 20 23:08 libpvode.so.1.0.0
-rw-r--r--. 1 mockbuild mock  2132070 Jan 20 23:02 libpvpre.a
lrwxrwxrwx. 1 mockbuild mock       17 Jan 20 23:08 libpvpre.so -> libpvpre.so.1.0.0
-rwxr-xr-x. 1 mockbuild mock   367424 Jan 20 23:08 libpvpre.so.1.0.0
+ make -j2 python
make -C tools/pylib python3
make[1]: Entering directory '/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tools/pylib'
PY=python3 make -C _boutcore_build pseudoinstall
make[2]: Entering directory '/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tools/pylib/_boutcore_build'
  Generating boutcore.pyx
  Generating setup.py
  Generating helper.cxx
  Generating helper.h
  Generating resolve_enum.pxd
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resolve_enum.pxd.in: line 80: /dev/stderr: Permission denied
  Generating boutcpp.pxd
warning: resolve_enum.pxd:49:25: 'deflt' redeclared 
warning: resolve_enum.pxd:189:28: 'Standard' redeclared 
warning: resolve_enum.pxd:223:19: 'Standard' redeclared 
Compiling boutcore.pyx because it changed.
[1/1] Cythonizing boutcore.pyx
running build_ext
building 'boutcore' extension
creating build
creating build/temp.linux-x86_64-cpython-311
mpic++ -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include -I/usr/include -I/usr/include -I/usr/include/openmpi-x86_64/petsc -I. -I/usr/include/python3.11 -c boutcore.cpp -o build/temp.linux-x86_64-cpython-311/boutcore.o -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DHAS_PRETTY_FUNCTION -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -DSIGHANDLE -DLOGCOLOR -DBOUT_VERSION_STRING=4.4.2 -DBOUT_VERSION_DOUBLE=4.42 -DBACKTRACE -fPIC -DBOUT_HAS_FFTW -DNCDF4 -DHDF5 -DBOUT_HAS_PETSC -DBOUT_HAS_IDA -DBOUT_HAS_CVODE -DBOUT_HAS_ARKODE -DBOUT_HAS_PVODE -DBOUT_HAS_GETTEXT -DBOUT_LOCALE_PATH=/usr/share/locale -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DHAS_PRETTY_FUNCTION -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -DSIGHANDLE -DLOGCOLOR -DBOUT_VERSION_STRING=4.4.2 -DBOUT_VERSION_DOUBLE=4.42 -DBACKTRACE -fPIC -DBOUT_HAS_FFTW -DNCDF4 -DHDF5 -DBOUT_HAS_PETSC -DBOUT_HAS_IDA -DBOUT_HAS_CVODE -DBOUT_HAS_ARKODE -DBOUT_HAS_PVODE -DBOUT_HAS_GETTEXT -DBOUT_LOCALE_PATH=/usr/share/locale -DBOUT_FLAGS_STRING=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DHAS_PRETTY_FUNCTION -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -DSIGHANDLE -DLOGCOLOR -DBOUT_VERSION_STRING=4.4.2 -DBOUT_VERSION_DOUBLE=4.42 -DBACKTRACE -fPIC -DBOUT_HAS_FFTW -DNCDF4 -DHDF5 -DBOUT_HAS_PETSC -DBOUT_HAS_IDA -DBOUT_HAS_CVODE -DBOUT_HAS_ARKODE -DBOUT_HAS_PVODE -DBOUT_HAS_GETTEXT -DBOUT_LOCALE_PATH=/usr/share/locale -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DHAS_PRETTY_FUNCTION -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -DSIGHANDLE -DLOGCOLOR -DBOUT_VERSION_STRING=4.4.2 -DBOUT_VERSION_DOUBLE=4.42 -DBACKTRACE -fPIC -DBOUT_HAS_FFTW -DNCDF4 -DHDF5 -DBOUT_HAS_PETSC -DBOUT_HAS_IDA -DBOUT_HAS_CVODE -DBOUT_HAS_ARKODE -DBOUT_HAS_PVODE -DBOUT_HAS_GETTEXT -DBOUT_LOCALE_PATH=/usr/share/locale
In file included from /usr/lib64/python3.11/site-packages/numpy/core/include/numpy/ndarraytypes.h:1948,
                 from /usr/lib64/python3.11/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
                 from /usr/lib64/python3.11/site-packages/numpy/core/include/numpy/arrayobject.h:5,
                 from boutcore.cpp:1050:
/usr/lib64/python3.11/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
   17 | #warning "Using deprecated NumPy API, disable it with " \
      |  ^~~~~~~
In file included from /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/field.hxx:41,
                 from /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/field3d.hxx:30,
                 from boutcore.cpp:1030:
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/msg_stack.hxx: In destructor ‘MsgStackItem::~MsgStackItem()’:
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/msg_stack.hxx:147:33: warning: ‘bool std::uncaught_exception()’ is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ios:41,
                 from boutcore.cpp:1024:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
boutcore.cpp: In function ‘int __Pyx_CLineForTraceback(PyThreadState*, int)’:
boutcore.cpp:66629:69: warning: unused parameter ‘tstate’ [-Wunused-parameter]
66629 | static int __Pyx_CLineForTraceback(CYTHON_NCP_UNUSED PyThreadState *tstate, int c_line) {
      |                                                      ~~~~~~~~~~~~~~~^~~~~~
boutcore.cpp: At global scope:
boutcore.cpp:25815:45: warning: ‘__pyx_obj_8boutcore_Vector2D* __pyx_f_8boutcore_v2dFromObj(Vector2D)’ defined but not used [-Wunused-function]
25815 | static struct __pyx_obj_8boutcore_Vector2D *__pyx_f_8boutcore_v2dFromObj(Vector2D __pyx_v_i) {
      |                                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
boutcore.cpp: In function ‘__pyx_f_12resolve_enum_resolve_cell_loc(_object*)’:
boutcore.cpp:50750:10: warning: ‘__pyx_r’ may be used uninitialized [-Wmaybe-uninitialized]
50750 |   return __pyx_r;
      |          ^~~~~~~
boutcore.cpp:50393:12: note: ‘__pyx_r’ was declared here
50393 |   CELL_LOC __pyx_r;
      |            ^~~~~~~
In function ‘__pyx_pf_8boutcore_44bracket(_object*, __pyx_obj_8boutcore_Field3D*, __pyx_obj_8boutcore_Field3D*, _object*, _object*)’,
    inlined from ‘__pyx_pw_8boutcore_45bracket(_object*, _object*, _object*)’ at boutcore.cpp:43784:41:
boutcore.cpp:43860:64: warning: ‘__pyx_r’ may be used uninitialized [-Wmaybe-uninitialized]
43860 |   __pyx_t_1 = ((PyObject *)__pyx_f_8boutcore_f3dFromObj(bracket((__pyx_v_a->cobj[0]), (__pyx_v_b->cobj[0]), __pyx_v_method_, __pyx_v_outloc_))); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 2642, __pyx_L1_error)
      |                                                         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
boutcore.cpp: In function ‘__pyx_pw_8boutcore_45bracket(_object*, _object*, _object*)’:
boutcore.cpp:52261:18: note: ‘__pyx_r’ was declared here
52261 |   BRACKET_METHOD __pyx_r;
      |                  ^~~~~~~
mpic++ -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include -I/usr/include -I/usr/include -I/usr/include/openmpi-x86_64/petsc -I. -I/usr/include/python3.11 -c boutexception_helper.cxx -o build/temp.linux-x86_64-cpython-311/boutexception_helper.o -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DHAS_PRETTY_FUNCTION -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -DSIGHANDLE -DLOGCOLOR -DBOUT_VERSION_STRING=4.4.2 -DBOUT_VERSION_DOUBLE=4.42 -DBACKTRACE -fPIC -DBOUT_HAS_FFTW -DNCDF4 -DHDF5 -DBOUT_HAS_PETSC -DBOUT_HAS_IDA -DBOUT_HAS_CVODE -DBOUT_HAS_ARKODE -DBOUT_HAS_PVODE -DBOUT_HAS_GETTEXT -DBOUT_LOCALE_PATH=/usr/share/locale -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DHAS_PRETTY_FUNCTION -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -DSIGHANDLE -DLOGCOLOR -DBOUT_VERSION_STRING=4.4.2 -DBOUT_VERSION_DOUBLE=4.42 -DBACKTRACE -fPIC -DBOUT_HAS_FFTW -DNCDF4 -DHDF5 -DBOUT_HAS_PETSC -DBOUT_HAS_IDA -DBOUT_HAS_CVODE -DBOUT_HAS_ARKODE -DBOUT_HAS_PVODE -DBOUT_HAS_GETTEXT -DBOUT_LOCALE_PATH=/usr/share/locale -DBOUT_FLAGS_STRING=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DHAS_PRETTY_FUNCTION -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -DSIGHANDLE -DLOGCOLOR -DBOUT_VERSION_STRING=4.4.2 -DBOUT_VERSION_DOUBLE=4.42 -DBACKTRACE -fPIC -DBOUT_HAS_FFTW -DNCDF4 -DHDF5 -DBOUT_HAS_PETSC -DBOUT_HAS_IDA -DBOUT_HAS_CVODE -DBOUT_HAS_ARKODE -DBOUT_HAS_PVODE -DBOUT_HAS_GETTEXT -DBOUT_LOCALE_PATH=/usr/share/locale -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DHAS_PRETTY_FUNCTION -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -DSIGHANDLE -DLOGCOLOR -DBOUT_VERSION_STRING=4.4.2 -DBOUT_VERSION_DOUBLE=4.42 -DBACKTRACE -fPIC -DBOUT_HAS_FFTW -DNCDF4 -DHDF5 -DBOUT_HAS_PETSC -DBOUT_HAS_IDA -DBOUT_HAS_CVODE -DBOUT_HAS_ARKODE -DBOUT_HAS_PVODE -DBOUT_HAS_GETTEXT -DBOUT_LOCALE_PATH=/usr/share/locale
mpic++ -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include -I/usr/include -I/usr/include -I/usr/include/openmpi-x86_64/petsc -I. -I/usr/include/python3.11 -c helper.cxx -o build/temp.linux-x86_64-cpython-311/helper.o -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DHAS_PRETTY_FUNCTION -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -DSIGHANDLE -DLOGCOLOR -DBOUT_VERSION_STRING=4.4.2 -DBOUT_VERSION_DOUBLE=4.42 -DBACKTRACE -fPIC -DBOUT_HAS_FFTW -DNCDF4 -DHDF5 -DBOUT_HAS_PETSC -DBOUT_HAS_IDA -DBOUT_HAS_CVODE -DBOUT_HAS_ARKODE -DBOUT_HAS_PVODE -DBOUT_HAS_GETTEXT -DBOUT_LOCALE_PATH=/usr/share/locale -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DHAS_PRETTY_FUNCTION -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -DSIGHANDLE -DLOGCOLOR -DBOUT_VERSION_STRING=4.4.2 -DBOUT_VERSION_DOUBLE=4.42 -DBACKTRACE -fPIC -DBOUT_HAS_FFTW -DNCDF4 -DHDF5 -DBOUT_HAS_PETSC -DBOUT_HAS_IDA -DBOUT_HAS_CVODE -DBOUT_HAS_ARKODE -DBOUT_HAS_PVODE -DBOUT_HAS_GETTEXT -DBOUT_LOCALE_PATH=/usr/share/locale -DBOUT_FLAGS_STRING=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DHAS_PRETTY_FUNCTION -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -DSIGHANDLE -DLOGCOLOR -DBOUT_VERSION_STRING=4.4.2 -DBOUT_VERSION_DOUBLE=4.42 -DBACKTRACE -fPIC -DBOUT_HAS_FFTW -DNCDF4 -DHDF5 -DBOUT_HAS_PETSC -DBOUT_HAS_IDA -DBOUT_HAS_CVODE -DBOUT_HAS_ARKODE -DBOUT_HAS_PVODE -DBOUT_HAS_GETTEXT -DBOUT_LOCALE_PATH=/usr/share/locale -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DHAS_PRETTY_FUNCTION -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -DSIGHANDLE -DLOGCOLOR -DBOUT_VERSION_STRING=4.4.2 -DBOUT_VERSION_DOUBLE=4.42 -DBACKTRACE -fPIC -DBOUT_HAS_FFTW -DNCDF4 -DHDF5 -DBOUT_HAS_PETSC -DBOUT_HAS_IDA -DBOUT_HAS_CVODE -DBOUT_HAS_ARKODE -DBOUT_HAS_PVODE -DBOUT_HAS_GETTEXT -DBOUT_LOCALE_PATH=/usr/share/locale
In file included from /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/field.hxx:41,
                 from /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/field3d.hxx:30,
                 from helper.cxx:1:
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/msg_stack.hxx: In destructor ‘MsgStackItem::~MsgStackItem()’:
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/msg_stack.hxx:147:33: warning: ‘bool std::uncaught_exception()’ is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/field.hxx:34:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
creating build/lib.linux-x86_64-cpython-311
mpic++ -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-x86_64-cpython-311/boutcore.o build/temp.linux-x86_64-cpython-311/boutexception_helper.o build/temp.linux-x86_64-cpython-311/helper.o -L/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/lib -L/usr/lib64 -L/usr/lib64 -L/usr/lib64/openmpi/lib -L/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/lib -L/usr/lib64 -lm -lbout++ -lm -lfftw3 -lnetcdf_c++4 -lnetcdf -lhdf5_hl -lhdf5 -lhdf5_hl -lsz -lz -ldl -lm -lpetsc -lhdf5 -lsundials_ida -lsundials_nvecparallel -lsundials_cvode -lsundials_nvecparallel -lsundials_arkode -lsundials_nvecparallel -lpvode -lpvpre -o build/lib.linux-x86_64-cpython-311/boutcore.cpython-311-x86_64-linux-gnu.so -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes
copying build/lib.linux-x86_64-cpython-311/boutcore.cpython-311-x86_64-linux-gnu.so -> 
cp boutcore*.so ..
make[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tools/pylib/_boutcore_build'
make[1]: Leaving directory '/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tools/pylib'
++ pwd
+ export LD_LIBRARY_PATH=/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/lib
+ LD_LIBRARY_PATH=/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/lib
+ make -j2 -C manual html
make: Entering directory '/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual'
cd doxygen && doxygen Doxyfile
warning: Tag 'TCL_SUBST' at line 247 of file 'Doxyfile' has become obsolete.
         To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
warning: Tag 'COLS_IN_ALPHA_INDEX' at line 1056 of file 'Doxyfile' has become obsolete.
         To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
warning: Tag 'FORMULA_TRANSPARENT' at line 1473 of file 'Doxyfile' has become obsolete.
         To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
warning: Tag 'LATEX_SOURCE_CODE' at line 1761 of file 'Doxyfile' has become obsolete.
         To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
warning: Tag 'RTF_SOURCE_CODE' at line 1843 of file 'Doxyfile' has become obsolete.
         To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
warning: Tag 'DOCBOOK_PROGRAMLISTING' at line 1941 of file 'Doxyfile' has become obsolete.
         To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
warning: Tag 'PERL_PATH' at line 2149 of file 'Doxyfile' has become obsolete.
         To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
warning: Tag 'CLASS_DIAGRAMS' at line 2162 of file 'Doxyfile' has become obsolete.
         To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
warning: Tag 'MSCGEN_PATH' at line 2171 of file 'Doxyfile' has become obsolete.
         To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
warning: Tag 'DOT_FONTNAME' at line 2213 of file 'Doxyfile' has become obsolete.
         To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
warning: Tag 'DOT_FONTSIZE' at line 2220 of file 'Doxyfile' has become obsolete.
         To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
warning: Tag 'DOT_TRANSPARENT' at line 2439 of file 'Doxyfile' has become obsolete.
         To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
warning: argument 'a4wide' for option PAPER_TYPE is not a valid enum value
Using the default: a4!
Doxygen version used: 1.9.6
Notice: Output directory 'bout' does not exist. I have created it for you.
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Reading /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/field/gen_fieldops.py...
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Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/petsc/petsc.cxx...
Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/petsc/petsc.hxx...
Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/petsc/petsc.hxx...
Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/power/power.cxx...
Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/power/power.cxx...
Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/power/power.hxx...
Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/power/power.hxx...
Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/pvode/pvode.cxx...
Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/pvode/pvode.cxx...
Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/pvode/pvode.hxx...
Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/pvode/pvode.hxx...
Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rk3-ssp/rk3-ssp.cxx...
Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rk3-ssp/rk3-ssp.cxx...
Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rk3-ssp/rk3-ssp.hxx...
Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rk3-ssp/rk3-ssp.hxx...
Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rk4/rk4.cxx...
Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rk4/rk4.cxx...
Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rk4/rk4.hxx...
Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rk4/rk4.hxx...
Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rkgeneric/impls/cashkarp/cashkarp.cxx...
Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rkgeneric/impls/cashkarp/cashkarp.cxx...
Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rkgeneric/impls/cashkarp/cashkarp.hxx...
Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rkgeneric/impls/cashkarp/cashkarp.hxx...
Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rkgeneric/impls/rk4simple/rk4simple.cxx...
Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rkgeneric/impls/rk4simple/rk4simple.cxx...
Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rkgeneric/impls/rk4simple/rk4simple.hxx...
Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rkgeneric/impls/rk4simple/rk4simple.hxx...
Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rkgeneric/impls/rkf34/rkf34.cxx...
Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rkgeneric/impls/rkf34/rkf34.cxx...
Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rkgeneric/impls/rkf34/rkf34.hxx...
Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rkgeneric/impls/rkf34/rkf34.hxx...
Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rkgeneric/impls/rkf45/rkf45.cxx...
Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rkgeneric/impls/rkf45/rkf45.cxx...
Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rkgeneric/impls/rkf45/rkf45.hxx...
Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rkgeneric/impls/rkf45/rkf45.hxx...
Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rkgeneric/rkgeneric.cxx...
Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rkgeneric/rkgeneric.cxx...
Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rkgeneric/rkgeneric.hxx...
Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rkgeneric/rkgeneric.hxx...
Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rkgeneric/rkscheme.cxx...
Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rkgeneric/rkscheme.cxx...
Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rkgeneric/rkschemefactory.cxx...
Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rkgeneric/rkschemefactory.cxx...
Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rkgeneric/rkschemefactory.hxx...
Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rkgeneric/rkschemefactory.hxx...
Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/slepc/slepc.cxx...
Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/slepc/slepc.cxx...
Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/slepc/slepc.hxx...
Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/slepc/slepc.hxx...
Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/snes/snes.cxx...
Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/snes/snes.cxx...
Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/snes/snes.hxx...
Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/snes/snes.hxx...
Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/split-rk/split-rk.cxx...
Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/split-rk/split-rk.cxx...
Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/split-rk/split-rk.hxx...
Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/split-rk/split-rk.hxx...
Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/solver.cxx...
Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/solver.cxx...
Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/solverfactory.cxx...
Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/solverfactory.cxx...
Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/bout_types.cxx...
Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/bout_types.cxx...
Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/boutcomm.cxx...
Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/boutcomm.cxx...
Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/boutexception.cxx...
Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/boutexception.cxx...
Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/derivs.cxx...
Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/derivs.cxx...
Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/expressionparser.cxx...
Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/expressionparser.cxx...
Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/msg_stack.cxx...
Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/msg_stack.cxx...
Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/options.cxx...
Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/options.cxx...
Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/options/optionparser.hxx...
Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/options/optionparser.hxx...
Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/options/options_ini.cxx...
Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/options/options_ini.cxx...
Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/options/options_ini.hxx...
Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/options/options_ini.hxx...
Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/options/options_netcdf.cxx...
Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/options/options_netcdf.cxx...
Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/optionsreader.cxx...
Parsing file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/optionsreader.cxx...
Preprocessing /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/output/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/generic_factory.hxx:1: warning: the name 'Base' supplied as the argument in the \file statement is not an input file
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.cxx:347: warning: no uniquely matching class member found for 
  const vector< int > NcFormat::getSize(const string &var)
Possible candidates:
  'virtual const std::vector< int > DataFormat::getSize(const char *var)=0' at line 70 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'virtual const std::vector< int > DataFormat::getSize(const std::string &var)=0' at line 71 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'const std::vector< int > EmptyFormat::getSize(const char *var)' at line 46 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx
  'const std::vector< int > EmptyFormat::getSize(const std::string &var)' at line 47 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx
  'const std::vector< int > H5Format::getSize(const char *var) override' at line 76 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'const std::vector< int > H5Format::getSize(const std::string &var) override' at line 77 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'const std::vector< int > NcFormat::getSize(const char *var) override' at line 77 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'const std::vector< int > NcFormat::getSize(const std::string &var) override' at line 78 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'const std::vector< int > Ncxx4::getSize(const char *var) override' at line 78 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'const std::vector< int > Ncxx4::getSize(const std::string &var) override' at line 79 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'const vector< int > PncFormat::getSize(const char *var) override' at line 75 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'const vector< int > PncFormat::getSize(const std::string &var) override' at line 76 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.cxx:659: warning: no uniquely matching class member found for 
  bool NcFormat::read(int *var, const string &name, int lx, int ly, int lz)
Possible candidates:
  'bool Datafile::read()' at line 94 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/datafile.hxx
  'virtual bool DataFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 89 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'virtual bool DataFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 90 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'virtual bool DataFormat::read(char *var, const char *name, int n=1)=0' at line 91 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'virtual bool DataFormat::read(char *var, const std::string &name, int n=1)=0' at line 92 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'virtual bool DataFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 93 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'virtual bool DataFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 94 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'Options bout::experimental::OptionsNetCDF::read()' at line 60 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/options_netcdf.hxx
  'void OptionsReader::read(Options *options, const char *file,...)' at line 65 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/optionsreader.hxx
  'bool EmptyFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 52 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 54 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 56 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 58 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx
  'bool H5Format::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 95 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 96 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read(char *var, const char *name, int n=1) override' at line 97 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read(char *var, const std::string &name, int n=1) override' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read(void *var, hid_t hdf5_type, const char *name, int lx=1, int ly=0, int lz=0)' at line 161 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool NcFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::read(char *var, const char *name, int n=1) override' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::read(char *var, const std::string &name, int n=1) override' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool Ncxx4::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::read(char *var, const char *name, int n=1) override' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::read(char *var, const std::string &name, int n=1) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 105 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool PncFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 84 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 85 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 86 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 87 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'virtual void OptionParser::read(Options *options, const std::string &filename)=0' at line 56 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/options/optionparser.hxx
  'void OptionINI::read(Options *options, const std::string &filename) override' at line 51 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/options/options_ini.hxx
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.cxx:715: warning: no uniquely matching class member found for 
  bool NcFormat::read(char *var, const string &name, int n)
Possible candidates:
  'bool Datafile::read()' at line 94 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/datafile.hxx
  'virtual bool DataFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 89 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'virtual bool DataFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 90 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'virtual bool DataFormat::read(char *var, const char *name, int n=1)=0' at line 91 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'virtual bool DataFormat::read(char *var, const std::string &name, int n=1)=0' at line 92 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'virtual bool DataFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 93 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'virtual bool DataFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 94 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'Options bout::experimental::OptionsNetCDF::read()' at line 60 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/options_netcdf.hxx
  'void OptionsReader::read(Options *options, const char *file,...)' at line 65 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/optionsreader.hxx
  'bool EmptyFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 52 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 54 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 56 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 58 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx
  'bool H5Format::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 95 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 96 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read(char *var, const char *name, int n=1) override' at line 97 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read(char *var, const std::string &name, int n=1) override' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read(void *var, hid_t hdf5_type, const char *name, int lx=1, int ly=0, int lz=0)' at line 161 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool NcFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::read(char *var, const char *name, int n=1) override' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::read(char *var, const std::string &name, int n=1) override' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool Ncxx4::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::read(char *var, const char *name, int n=1) override' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::read(char *var, const std::string &name, int n=1) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 105 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool PncFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 84 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 85 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 86 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 87 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'virtual void OptionParser::read(Options *options, const std::string &filename)=0' at line 56 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/options/optionparser.hxx
  'void OptionINI::read(Options *options, const std::string &filename) override' at line 51 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/options/options_ini.hxx
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.cxx:756: warning: no uniquely matching class member found for 
  bool NcFormat::read(double *var, const string &name, int lx, int ly, int lz)
Possible candidates:
  'bool Datafile::read()' at line 94 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/datafile.hxx
  'virtual bool DataFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 89 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'virtual bool DataFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 90 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'virtual bool DataFormat::read(char *var, const char *name, int n=1)=0' at line 91 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'virtual bool DataFormat::read(char *var, const std::string &name, int n=1)=0' at line 92 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'virtual bool DataFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 93 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'virtual bool DataFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 94 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'Options bout::experimental::OptionsNetCDF::read()' at line 60 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/options_netcdf.hxx
  'void OptionsReader::read(Options *options, const char *file,...)' at line 65 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/optionsreader.hxx
  'bool EmptyFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 52 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 54 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 56 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 58 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx
  'bool H5Format::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 95 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 96 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read(char *var, const char *name, int n=1) override' at line 97 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read(char *var, const std::string &name, int n=1) override' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read(void *var, hid_t hdf5_type, const char *name, int lx=1, int ly=0, int lz=0)' at line 161 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool NcFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::read(char *var, const char *name, int n=1) override' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::read(char *var, const std::string &name, int n=1) override' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool Ncxx4::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::read(char *var, const char *name, int n=1) override' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::read(char *var, const std::string &name, int n=1) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 105 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool PncFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 84 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 85 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 86 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 87 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'virtual void OptionParser::read(Options *options, const std::string &filename)=0' at line 56 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/options/optionparser.hxx
  'void OptionINI::read(Options *options, const std::string &filename) override' at line 51 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/options/options_ini.hxx
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.cxx:834: warning: no uniquely matching class member found for 
  bool NcFormat::write(int *var, const string &name, int lx, int ly, int lz)
Possible candidates:
  'bool Datafile::write()' at line 95 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/datafile.hxx
  'bool Datafile::write(const char *filename,...) const' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/datafile.hxx
  'virtual bool DataFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 97 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'virtual bool DataFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'virtual bool DataFormat::write(char *var, const char *name, int n=1)=0' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'virtual bool DataFormat::write(char *var, const std::string &name, int n=1)=0' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'virtual bool DataFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'virtual bool DataFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'void bout::experimental::OptionsNetCDF::write(const Options &options)' at line 63 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/options_netcdf.hxx
  'void OptionsReader::write(Options *options, const char *file,...)' at line 72 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/optionsreader.hxx
  'virtual void Output::write(const char *string,...)' at line 92 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/output.hxx
  'void DummyOutput::write(const char *str,...) override' at line 133 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/output.hxx
  'void ConditionalOutput::write(const char *str,...) override' at line 162 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/output.hxx
  'bool EmptyFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 61 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 63 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 65 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 67 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx
  'bool H5Format::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write(char *var, const char *name, int n=1) override' at line 105 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write(char *var, const std::string &name, int n=1) override' at line 106 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 107 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write(void *var, hid_t mem_hdf5_type, const char *name, int lx=0, int ly=0, int lz=0)' at line 162 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool NcFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 107 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::write(char *var, const char *name, int n=1) override' at line 109 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::write(char *var, const std::string &name, int n=1) override' at line 110 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 111 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 112 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool Ncxx4::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 109 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::write(char *var, const char *name, int n=1) override' at line 110 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::write(char *var, const std::string &name, int n=1) override' at line 111 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 112 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 113 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool PncFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 89 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 90 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 91 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 92 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'virtual void OptionParser::write(Options *options, const std::string &filename)=0' at line 59 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/options/optionparser.hxx
  'void OptionINI::write(Options *options, const std::string &filename) override' at line 54 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/options/options_ini.hxx
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.cxx:879: warning: no uniquely matching class member found for 
  bool NcFormat::write(char *var, const string &name, int n)
Possible candidates:
  'bool Datafile::write()' at line 95 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/datafile.hxx
  'bool Datafile::write(const char *filename,...) const' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/datafile.hxx
  'virtual bool DataFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 97 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'virtual bool DataFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'virtual bool DataFormat::write(char *var, const char *name, int n=1)=0' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'virtual bool DataFormat::write(char *var, const std::string &name, int n=1)=0' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'virtual bool DataFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'virtual bool DataFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'void bout::experimental::OptionsNetCDF::write(const Options &options)' at line 63 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/options_netcdf.hxx
  'void OptionsReader::write(Options *options, const char *file,...)' at line 72 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/optionsreader.hxx
  'virtual void Output::write(const char *string,...)' at line 92 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/output.hxx
  'void DummyOutput::write(const char *str,...) override' at line 133 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/output.hxx
  'void ConditionalOutput::write(const char *str,...) override' at line 162 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/output.hxx
  'bool EmptyFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 61 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 63 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 65 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 67 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx
  'bool H5Format::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write(char *var, const char *name, int n=1) override' at line 105 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write(char *var, const std::string &name, int n=1) override' at line 106 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 107 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write(void *var, hid_t mem_hdf5_type, const char *name, int lx=0, int ly=0, int lz=0)' at line 162 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool NcFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 107 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::write(char *var, const char *name, int n=1) override' at line 109 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::write(char *var, const std::string &name, int n=1) override' at line 110 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 111 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 112 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool Ncxx4::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 109 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::write(char *var, const char *name, int n=1) override' at line 110 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::write(char *var, const std::string &name, int n=1) override' at line 111 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 112 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 113 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool PncFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 89 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 90 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 91 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 92 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'virtual void OptionParser::write(Options *options, const std::string &filename)=0' at line 59 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/options/optionparser.hxx
  'void OptionINI::write(Options *options, const std::string &filename) override' at line 54 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/options/options_ini.hxx
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.cxx:941: warning: no uniquely matching class member found for 
  bool NcFormat::write(double *var, const string &name, int lx, int ly, int lz)
Possible candidates:
  'bool Datafile::write()' at line 95 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/datafile.hxx
  'bool Datafile::write(const char *filename,...) const' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/datafile.hxx
  'virtual bool DataFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 97 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'virtual bool DataFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'virtual bool DataFormat::write(char *var, const char *name, int n=1)=0' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'virtual bool DataFormat::write(char *var, const std::string &name, int n=1)=0' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'virtual bool DataFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'virtual bool DataFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'void bout::experimental::OptionsNetCDF::write(const Options &options)' at line 63 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/options_netcdf.hxx
  'void OptionsReader::write(Options *options, const char *file,...)' at line 72 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/optionsreader.hxx
  'virtual void Output::write(const char *string,...)' at line 92 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/output.hxx
  'void DummyOutput::write(const char *str,...) override' at line 133 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/output.hxx
  'void ConditionalOutput::write(const char *str,...) override' at line 162 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/output.hxx
  'bool EmptyFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 61 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 63 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 65 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 67 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx
  'bool H5Format::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write(char *var, const char *name, int n=1) override' at line 105 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write(char *var, const std::string &name, int n=1) override' at line 106 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 107 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write(void *var, hid_t mem_hdf5_type, const char *name, int lx=0, int ly=0, int lz=0)' at line 162 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool NcFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 107 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::write(char *var, const char *name, int n=1) override' at line 109 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::write(char *var, const std::string &name, int n=1) override' at line 110 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 111 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 112 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool Ncxx4::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 109 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::write(char *var, const char *name, int n=1) override' at line 110 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::write(char *var, const std::string &name, int n=1) override' at line 111 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 112 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 113 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool PncFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 89 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 90 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 91 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 92 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'virtual void OptionParser::write(Options *options, const std::string &filename)=0' at line 59 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/options/optionparser.hxx
  'void OptionINI::write(Options *options, const std::string &filename) override' at line 54 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/options/options_ini.hxx
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.cxx:1043: warning: no uniquely matching class member found for 
  bool NcFormat::read_rec(int *var, const string &name, int lx, int ly, int lz)
Possible candidates:
  'virtual bool DataFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 107 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'virtual bool DataFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'virtual bool DataFormat::read_rec(char *var, const char *name, int n=1)=0' at line 109 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'virtual bool DataFormat::read_rec(char *var, const std::string &name, int n=1)=0' at line 110 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'virtual bool DataFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 111 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'virtual bool DataFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 112 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'bool EmptyFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 70 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 72 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 74 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 76 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx
  'bool H5Format::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 113 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 114 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read_rec(char *var, const char *name, int n=1) override' at line 115 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read_rec(char *var, const std::string &name, int n=1) override' at line 116 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 117 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read_rec(void *var, hid_t hdf5_type, const char *name, int lx=1, int ly=0, int lz=0)' at line 163 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool NcFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 117 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::read_rec(char *var, const char *name, int n=1) override' at line 119 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::read_rec(char *var, const std::string &name, int n=1) override' at line 120 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 121 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 122 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool Ncxx4::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 119 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::read_rec(char *var, const char *name, int n=1) override' at line 120 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::read_rec(char *var, const std::string &name, int n=1) override' at line 121 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 122 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 123 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool PncFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 96 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 97 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.cxx:1089: warning: no uniquely matching class member found for 
  bool NcFormat::read_rec(char *var, const string &name, int n)
Possible candidates:
  'virtual bool DataFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 107 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'virtual bool DataFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'virtual bool DataFormat::read_rec(char *var, const char *name, int n=1)=0' at line 109 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'virtual bool DataFormat::read_rec(char *var, const std::string &name, int n=1)=0' at line 110 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'virtual bool DataFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 111 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'virtual bool DataFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 112 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'bool EmptyFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 70 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 72 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 74 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 76 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx
  'bool H5Format::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 113 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 114 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read_rec(char *var, const char *name, int n=1) override' at line 115 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read_rec(char *var, const std::string &name, int n=1) override' at line 116 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 117 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read_rec(void *var, hid_t hdf5_type, const char *name, int lx=1, int ly=0, int lz=0)' at line 163 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool NcFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 117 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::read_rec(char *var, const char *name, int n=1) override' at line 119 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::read_rec(char *var, const std::string &name, int n=1) override' at line 120 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 121 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 122 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool Ncxx4::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 119 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::read_rec(char *var, const char *name, int n=1) override' at line 120 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::read_rec(char *var, const std::string &name, int n=1) override' at line 121 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 122 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 123 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool PncFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 96 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 97 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.cxx:1130: warning: no uniquely matching class member found for 
  bool NcFormat::read_rec(double *var, const string &name, int lx, int ly, int lz)
Possible candidates:
  'virtual bool DataFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 107 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'virtual bool DataFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'virtual bool DataFormat::read_rec(char *var, const char *name, int n=1)=0' at line 109 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'virtual bool DataFormat::read_rec(char *var, const std::string &name, int n=1)=0' at line 110 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'virtual bool DataFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 111 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'virtual bool DataFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 112 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'bool EmptyFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 70 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 72 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 74 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 76 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx
  'bool H5Format::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 113 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 114 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read_rec(char *var, const char *name, int n=1) override' at line 115 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read_rec(char *var, const std::string &name, int n=1) override' at line 116 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 117 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read_rec(void *var, hid_t hdf5_type, const char *name, int lx=1, int ly=0, int lz=0)' at line 163 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool NcFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 117 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::read_rec(char *var, const char *name, int n=1) override' at line 119 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::read_rec(char *var, const std::string &name, int n=1) override' at line 120 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 121 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 122 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool Ncxx4::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 119 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::read_rec(char *var, const char *name, int n=1) override' at line 120 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::read_rec(char *var, const std::string &name, int n=1) override' at line 121 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 122 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 123 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool PncFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 96 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 97 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.cxx:1212: warning: no uniquely matching class member found for 
  bool NcFormat::write_rec(int *var, const string &name, int lx, int ly, int lz)
Possible candidates:
  'virtual bool DataFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 115 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'virtual bool DataFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 116 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'virtual bool DataFormat::write_rec(char *var, const char *name, int n=1)=0' at line 117 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'virtual bool DataFormat::write_rec(char *var, const std::string &name, int n=1)=0' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'virtual bool DataFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 119 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'virtual bool DataFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 120 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'bool EmptyFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 79 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 81 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 83 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 85 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx
  'bool H5Format::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 121 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 122 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write_rec(char *var, const char *name, int n=1) override' at line 123 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write_rec(char *var, const std::string &name, int n=1) override' at line 124 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 125 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 126 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write_rec(void *var, hid_t mem_hdf5_type, const char *name, int lx=0, int ly=0, int lz=0)' at line 164 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool NcFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 125 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 126 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::write_rec(char *var, const char *name, int n=1) override' at line 127 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::write_rec(char *var, const std::string &name, int n=1) override' at line 128 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 129 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 130 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool Ncxx4::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 126 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 127 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::write_rec(char *var, const char *name, int n=1) override' at line 128 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::write_rec(char *var, const std::string &name, int n=1) override' at line 129 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 130 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 131 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool PncFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.cxx:1260: warning: no uniquely matching class member found for 
  bool NcFormat::write_rec(char *var, const string &name, int n)
Possible candidates:
  'virtual bool DataFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 115 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'virtual bool DataFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 116 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'virtual bool DataFormat::write_rec(char *var, const char *name, int n=1)=0' at line 117 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'virtual bool DataFormat::write_rec(char *var, const std::string &name, int n=1)=0' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'virtual bool DataFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 119 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'virtual bool DataFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 120 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'bool EmptyFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 79 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 81 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 83 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 85 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx
  'bool H5Format::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 121 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 122 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write_rec(char *var, const char *name, int n=1) override' at line 123 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write_rec(char *var, const std::string &name, int n=1) override' at line 124 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 125 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 126 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write_rec(void *var, hid_t mem_hdf5_type, const char *name, int lx=0, int ly=0, int lz=0)' at line 164 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool NcFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 125 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 126 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::write_rec(char *var, const char *name, int n=1) override' at line 127 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::write_rec(char *var, const std::string &name, int n=1) override' at line 128 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 129 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 130 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool Ncxx4::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 126 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 127 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::write_rec(char *var, const char *name, int n=1) override' at line 128 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::write_rec(char *var, const std::string &name, int n=1) override' at line 129 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 130 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 131 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool PncFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.cxx:1335: warning: no uniquely matching class member found for 
  bool NcFormat::write_rec(double *var, const string &name, int lx, int ly, int lz)
Possible candidates:
  'virtual bool DataFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 115 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'virtual bool DataFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 116 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'virtual bool DataFormat::write_rec(char *var, const char *name, int n=1)=0' at line 117 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'virtual bool DataFormat::write_rec(char *var, const std::string &name, int n=1)=0' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'virtual bool DataFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 119 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'virtual bool DataFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 120 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'bool EmptyFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 79 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 81 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 83 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 85 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx
  'bool H5Format::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 121 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 122 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write_rec(char *var, const char *name, int n=1) override' at line 123 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write_rec(char *var, const std::string &name, int n=1) override' at line 124 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 125 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 126 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write_rec(void *var, hid_t mem_hdf5_type, const char *name, int lx=0, int ly=0, int lz=0)' at line 164 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool NcFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 125 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 126 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::write_rec(char *var, const char *name, int n=1) override' at line 127 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::write_rec(char *var, const std::string &name, int n=1) override' at line 128 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 129 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 130 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool Ncxx4::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 126 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 127 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::write_rec(char *var, const char *name, int n=1) override' at line 128 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::write_rec(char *var, const std::string &name, int n=1) override' at line 129 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 130 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 131 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool PncFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.cxx:295: warning: no uniquely matching class member found for 
  bool PncFormat::read(int *var, const string &name, int lx, int ly, int lz)
Possible candidates:
  'bool Datafile::read()' at line 94 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/datafile.hxx
  'virtual bool DataFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 89 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'virtual bool DataFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 90 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'virtual bool DataFormat::read(char *var, const char *name, int n=1)=0' at line 91 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'virtual bool DataFormat::read(char *var, const std::string &name, int n=1)=0' at line 92 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'virtual bool DataFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 93 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'virtual bool DataFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 94 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'Options bout::experimental::OptionsNetCDF::read()' at line 60 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/options_netcdf.hxx
  'void OptionsReader::read(Options *options, const char *file,...)' at line 65 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/optionsreader.hxx
  'bool EmptyFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 52 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 54 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 56 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 58 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx
  'bool H5Format::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 95 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 96 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read(char *var, const char *name, int n=1) override' at line 97 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read(char *var, const std::string &name, int n=1) override' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read(void *var, hid_t hdf5_type, const char *name, int lx=1, int ly=0, int lz=0)' at line 161 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool NcFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::read(char *var, const char *name, int n=1) override' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::read(char *var, const std::string &name, int n=1) override' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool Ncxx4::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::read(char *var, const char *name, int n=1) override' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::read(char *var, const std::string &name, int n=1) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 105 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool PncFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 84 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 85 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 86 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 87 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'virtual void OptionParser::read(Options *options, const std::string &filename)=0' at line 56 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/options/optionparser.hxx
  'void OptionINI::read(Options *options, const std::string &filename) override' at line 51 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/options/options_ini.hxx
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.cxx:354: warning: no uniquely matching class member found for 
  bool PncFormat::read(double *var, const string &name, int lx, int ly, int lz)
Possible candidates:
  'bool Datafile::read()' at line 94 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/datafile.hxx
  'virtual bool DataFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 89 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'virtual bool DataFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 90 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'virtual bool DataFormat::read(char *var, const char *name, int n=1)=0' at line 91 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'virtual bool DataFormat::read(char *var, const std::string &name, int n=1)=0' at line 92 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'virtual bool DataFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 93 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'virtual bool DataFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 94 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'Options bout::experimental::OptionsNetCDF::read()' at line 60 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/options_netcdf.hxx
  'void OptionsReader::read(Options *options, const char *file,...)' at line 65 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/optionsreader.hxx
  'bool EmptyFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 52 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 54 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 56 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 58 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx
  'bool H5Format::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 95 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 96 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read(char *var, const char *name, int n=1) override' at line 97 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read(char *var, const std::string &name, int n=1) override' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read(void *var, hid_t hdf5_type, const char *name, int lx=1, int ly=0, int lz=0)' at line 161 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool NcFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::read(char *var, const char *name, int n=1) override' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::read(char *var, const std::string &name, int n=1) override' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool Ncxx4::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::read(char *var, const char *name, int n=1) override' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::read(char *var, const std::string &name, int n=1) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 105 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool PncFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 84 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 85 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 86 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 87 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'virtual void OptionParser::read(Options *options, const std::string &filename)=0' at line 56 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/options/optionparser.hxx
  'void OptionINI::read(Options *options, const std::string &filename) override' at line 51 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/options/options_ini.hxx
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.cxx:402: warning: no uniquely matching class member found for 
  bool PncFormat::write(int *var, const string &name, int lx, int ly, int lz)
Possible candidates:
  'bool Datafile::write()' at line 95 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/datafile.hxx
  'bool Datafile::write(const char *filename,...) const' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/datafile.hxx
  'virtual bool DataFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 97 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'virtual bool DataFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'virtual bool DataFormat::write(char *var, const char *name, int n=1)=0' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'virtual bool DataFormat::write(char *var, const std::string &name, int n=1)=0' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'virtual bool DataFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'virtual bool DataFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'void bout::experimental::OptionsNetCDF::write(const Options &options)' at line 63 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/options_netcdf.hxx
  'void OptionsReader::write(Options *options, const char *file,...)' at line 72 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/optionsreader.hxx
  'virtual void Output::write(const char *string,...)' at line 92 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/output.hxx
  'void DummyOutput::write(const char *str,...) override' at line 133 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/output.hxx
  'void ConditionalOutput::write(const char *str,...) override' at line 162 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/output.hxx
  'bool EmptyFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 61 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 63 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 65 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 67 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx
  'bool H5Format::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write(char *var, const char *name, int n=1) override' at line 105 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write(char *var, const std::string &name, int n=1) override' at line 106 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 107 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write(void *var, hid_t mem_hdf5_type, const char *name, int lx=0, int ly=0, int lz=0)' at line 162 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool NcFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 107 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::write(char *var, const char *name, int n=1) override' at line 109 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::write(char *var, const std::string &name, int n=1) override' at line 110 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 111 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 112 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool Ncxx4::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 109 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::write(char *var, const char *name, int n=1) override' at line 110 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::write(char *var, const std::string &name, int n=1) override' at line 111 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 112 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 113 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool PncFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 89 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 90 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 91 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 92 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'virtual void OptionParser::write(Options *options, const std::string &filename)=0' at line 59 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/options/optionparser.hxx
  'void OptionINI::write(Options *options, const std::string &filename) override' at line 54 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/options/options_ini.hxx
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.cxx:488: warning: no uniquely matching class member found for 
  bool PncFormat::write(double *var, const string &name, int lx, int ly, int lz)
Possible candidates:
  'bool Datafile::write()' at line 95 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/datafile.hxx
  'bool Datafile::write(const char *filename,...) const' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/datafile.hxx
  'virtual bool DataFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 97 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'virtual bool DataFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'virtual bool DataFormat::write(char *var, const char *name, int n=1)=0' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'virtual bool DataFormat::write(char *var, const std::string &name, int n=1)=0' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'virtual bool DataFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'virtual bool DataFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'void bout::experimental::OptionsNetCDF::write(const Options &options)' at line 63 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/options_netcdf.hxx
  'void OptionsReader::write(Options *options, const char *file,...)' at line 72 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/optionsreader.hxx
  'virtual void Output::write(const char *string,...)' at line 92 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/output.hxx
  'void DummyOutput::write(const char *str,...) override' at line 133 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/output.hxx
  'void ConditionalOutput::write(const char *str,...) override' at line 162 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/output.hxx
  'bool EmptyFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 61 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 63 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 65 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 67 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx
  'bool H5Format::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write(char *var, const char *name, int n=1) override' at line 105 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write(char *var, const std::string &name, int n=1) override' at line 106 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 107 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write(void *var, hid_t mem_hdf5_type, const char *name, int lx=0, int ly=0, int lz=0)' at line 162 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool NcFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 107 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::write(char *var, const char *name, int n=1) override' at line 109 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::write(char *var, const std::string &name, int n=1) override' at line 110 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 111 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 112 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool Ncxx4::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 109 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::write(char *var, const char *name, int n=1) override' at line 110 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::write(char *var, const std::string &name, int n=1) override' at line 111 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 112 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 113 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool PncFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 89 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 90 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 91 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 92 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'virtual void OptionParser::write(Options *options, const std::string &filename)=0' at line 59 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/options/optionparser.hxx
  'void OptionINI::write(Options *options, const std::string &filename) override' at line 54 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/options/options_ini.hxx
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.cxx:524: warning: no uniquely matching class member found for 
  bool PncFormat::read_rec(int *var, const string &name, int lx, int ly, int lz)
Possible candidates:
  'virtual bool DataFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 107 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'virtual bool DataFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'virtual bool DataFormat::read_rec(char *var, const char *name, int n=1)=0' at line 109 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'virtual bool DataFormat::read_rec(char *var, const std::string &name, int n=1)=0' at line 110 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'virtual bool DataFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 111 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'virtual bool DataFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 112 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'bool EmptyFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 70 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 72 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 74 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 76 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx
  'bool H5Format::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 113 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 114 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read_rec(char *var, const char *name, int n=1) override' at line 115 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read_rec(char *var, const std::string &name, int n=1) override' at line 116 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 117 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read_rec(void *var, hid_t hdf5_type, const char *name, int lx=1, int ly=0, int lz=0)' at line 163 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool NcFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 117 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::read_rec(char *var, const char *name, int n=1) override' at line 119 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::read_rec(char *var, const std::string &name, int n=1) override' at line 120 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 121 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 122 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool Ncxx4::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 119 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::read_rec(char *var, const char *name, int n=1) override' at line 120 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::read_rec(char *var, const std::string &name, int n=1) override' at line 121 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 122 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 123 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool PncFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 96 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 97 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.cxx:556: warning: no uniquely matching class member found for 
  bool PncFormat::read_rec(double *var, const string &name, int lx, int ly, int lz)
Possible candidates:
  'virtual bool DataFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 107 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'virtual bool DataFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 108 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'virtual bool DataFormat::read_rec(char *var, const char *name, int n=1)=0' at line 109 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'virtual bool DataFormat::read_rec(char *var, const std::string &name, int n=1)=0' at line 110 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'virtual bool DataFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)=0' at line 111 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'virtual bool DataFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)=0' at line 112 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'bool EmptyFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 70 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 72 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0)' at line 74 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0)' at line 76 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx
  'bool H5Format::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 113 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 114 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read_rec(char *var, const char *name, int n=1) override' at line 115 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read_rec(char *var, const std::string &name, int n=1) override' at line 116 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 117 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::read_rec(void *var, hid_t hdf5_type, const char *name, int lx=1, int ly=0, int lz=0)' at line 163 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool NcFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 117 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::read_rec(char *var, const char *name, int n=1) override' at line 119 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::read_rec(char *var, const std::string &name, int n=1) override' at line 120 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 121 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 122 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool Ncxx4::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 119 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::read_rec(char *var, const char *name, int n=1) override' at line 120 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::read_rec(char *var, const std::string &name, int n=1) override' at line 121 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 122 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 123 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool PncFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 96 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 97 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.cxx:605: warning: no uniquely matching class member found for 
  bool PncFormat::write_rec(int *var, const string &name, int lx, int ly, int lz)
Possible candidates:
  'virtual bool DataFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 115 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'virtual bool DataFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 116 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'virtual bool DataFormat::write_rec(char *var, const char *name, int n=1)=0' at line 117 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'virtual bool DataFormat::write_rec(char *var, const std::string &name, int n=1)=0' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'virtual bool DataFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 119 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'virtual bool DataFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 120 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'bool EmptyFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 79 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 81 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 83 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 85 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx
  'bool H5Format::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 121 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 122 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write_rec(char *var, const char *name, int n=1) override' at line 123 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write_rec(char *var, const std::string &name, int n=1) override' at line 124 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 125 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 126 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write_rec(void *var, hid_t mem_hdf5_type, const char *name, int lx=0, int ly=0, int lz=0)' at line 164 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool NcFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 125 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 126 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::write_rec(char *var, const char *name, int n=1) override' at line 127 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::write_rec(char *var, const std::string &name, int n=1) override' at line 128 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 129 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 130 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool Ncxx4::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 126 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 127 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::write_rec(char *var, const char *name, int n=1) override' at line 128 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::write_rec(char *var, const std::string &name, int n=1) override' at line 129 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 130 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 131 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool PncFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.cxx:681: warning: no uniquely matching class member found for 
  bool PncFormat::write_rec(double *var, const string &name, int lx, int ly, int lz)
Possible candidates:
  'virtual bool DataFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 115 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'virtual bool DataFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 116 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'virtual bool DataFormat::write_rec(char *var, const char *name, int n=1)=0' at line 117 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'virtual bool DataFormat::write_rec(char *var, const std::string &name, int n=1)=0' at line 118 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'virtual bool DataFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)=0' at line 119 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'virtual bool DataFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)=0' at line 120 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx
  'bool EmptyFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 79 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 81 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0)' at line 83 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx
  'bool EmptyFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0)' at line 85 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/emptyformat.hxx
  'bool H5Format::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 121 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 122 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write_rec(char *var, const char *name, int n=1) override' at line 123 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write_rec(char *var, const std::string &name, int n=1) override' at line 124 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 125 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 126 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool H5Format::write_rec(void *var, hid_t mem_hdf5_type, const char *name, int lx=0, int ly=0, int lz=0)' at line 164 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx
  'bool NcFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 125 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 126 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::write_rec(char *var, const char *name, int n=1) override' at line 127 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::write_rec(char *var, const std::string &name, int n=1) override' at line 128 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 129 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool NcFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 130 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx
  'bool Ncxx4::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 126 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 127 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::write_rec(char *var, const char *name, int n=1) override' at line 128 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::write_rec(char *var, const std::string &name, int n=1) override' at line 129 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 130 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool Ncxx4::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 131 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx
  'bool PncFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx
  'bool PncFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/boundary_factory.cxx:80: warning: no uniquely matching class member found for 
  BoundaryOpBase * BoundaryFactory::create(const string &name, BoundaryRegionBase *region)
Possible candidates:
  'BoundaryOpBase * BoundaryFactory::create(const std::string &name, BoundaryRegionBase *region)' at line 70 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/boundary_factory.hxx
  'BoundaryOpBase * BoundaryFactory::create(const char *name, BoundaryRegionBase *region)' at line 71 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/boundary_factory.hxx
  'template < Args >
  BaseType * Factory< BaseType, TypeCreator >::create(const std::string &name, Args &&... args)' at line 57 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/generic_factory.hxx
  'static LaplaceXZ * LaplaceXZ::create(Mesh *m=nullptr, Options *opt=nullptr, const CELL_LOC loc=CELL_CENTRE)' at line 51 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/invert/laplacexz.hxx
  'static Mesh * Mesh::create(GridDataSource *source, Options *opt=nullptr)' at line 100 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/mesh.hxx
  'static Mesh * Mesh::create(Options *opt=nullptr)' at line 110 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/mesh.hxx
  'static Solver * Solver::create(Options *opts=nullptr)' at line 308 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/solver.hxx
  'static Solver * Solver::create(const SolverType &type, Options *opts=nullptr)' at line 311 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/solver.hxx
  'Interpolation * InterpolationFactory::create(Mesh *mesh)' at line 49 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/interpolation_factory.hxx
  'Interpolation * InterpolationFactory::create(Options *options=nullptr, Mesh *mesh=nullptr)' at line 50 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/interpolation_factory.hxx
  'Interpolation * InterpolationFactory::create(const std::string &name, Options *options=nullptr, Mesh *mesh=nullptr)' at line 59 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/interpolation_factory.hxx
  'static Laplacian * Laplacian::create(Options *opt=nullptr, const CELL_LOC loc=CELL_CENTRE, Mesh *mesh_in=nullptr)' at line 212 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/invert_laplace.hxx
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/boundary_factory.cxx:210: warning: no matching class member found for 
  BoundaryOpBase * BoundaryFactory::createFromOptions(const string &varname, BoundaryRegionBase *region)
Possible candidates:
  'BoundaryOpBase * BoundaryFactory::createFromOptions(const std::string &varname, BoundaryRegionBase *region)' at line 74 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/boundary_factory.hxx
  'BoundaryOpBase * BoundaryFactory::createFromOptions(const char *varname, BoundaryRegionBase *region)' at line 75 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/boundary_factory.hxx
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/boundary_factory.cxx:313: warning: no uniquely matching class member found for 
  void BoundaryFactory::add(BoundaryOp *bop, const string &name)
Possible candidates:
  'void BoundaryFactory::add(BoundaryOp *bop, const std::string &name)' at line 81 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/boundary_factory.hxx
  'void BoundaryFactory::add(BoundaryOp *bop, const char *name)' at line 88 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/boundary_factory.hxx
  'void BoundaryFactory::add(BoundaryOpPar *bop, const std::string &name)' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/boundary_factory.hxx
  'void BoundaryFactory::add(BoundaryOpPar *bop, const char *name)' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/boundary_factory.hxx
  'void FieldGroup::add(const FieldGroup &other)' at line 70 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/fieldgroup.hxx
  'void FieldGroup::add(FieldData &f)' at line 86 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/fieldgroup.hxx
  'void FieldGroup::add(Field3D &f)' at line 95 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/fieldgroup.hxx
  'void FieldGroup::add(Vector2D &v)' at line 105 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/fieldgroup.hxx
  'void FieldGroup::add(Vector3D &v)' at line 116 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/fieldgroup.hxx
  'template < Ts >
  void FieldGroup::add(FieldData &t, Ts &... ts)' at line 131 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/fieldgroup.hxx
  'template < Ts >
  void FieldGroup::add(Field3D &t, Ts &... ts)' at line 137 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/fieldgroup.hxx
  'template < Ts >
  void FieldGroup::add(Vector3D &t, Ts &... ts)' at line 143 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/fieldgroup.hxx
  'template < Ts >
  void FieldGroup::add(Vector2D &t, Ts &... ts)' at line 149 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/fieldgroup.hxx
  'virtual bool Factory< BaseType, TypeCreator >::add(const std::string &name, TypeCreator creator)' at line 42 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/generic_factory.hxx
  'virtual void Solver::add(Field2D &v, const std::string &name, const std::string &description="")' at line 236 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/solver.hxx
  'virtual void Solver::add(Field3D &v, const std::string &name, const std::string &description="")' at line 237 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/solver.hxx
  'virtual void Solver::add(Vector2D &v, const std::string &name, const std::string &description="")' at line 238 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/solver.hxx
  'virtual void Solver::add(Vector3D &v, const std::string &name, const std::string &description="")' at line 239 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/solver.hxx
  'void Datafile::add(int &i, const char *name, bool save_repeat=false, const std::string &description="")' at line 73 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/datafile.hxx
  'void Datafile::add(std::vector< int > &ivec, const char *name, bool save_repeat=false, const std::string &description="")' at line 75 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/datafile.hxx
  'void Datafile::add(std::string &s, const char *name, bool save_repeat=false, const std::string &description="")' at line 77 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/datafile.hxx
  'void Datafile::add(BoutReal &r, const char *name, bool save_repeat=false, const std::string &description="")' at line 79 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/datafile.hxx
  'void Datafile::add(bool &b, const char *name, bool save_repeat=false, const std::string &description="")' at line 81 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/datafile.hxx
  'void Datafile::add(Field2D &f, const char *name, bool save_repeat=false, const std::string &description="")' at line 83 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/datafile.hxx
  'void Datafile::add(Field3D &f, const char *name, bool save_repeat=false, const std::string &description="")' at line 85 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/datafile.hxx
  'void Datafile::add(FieldPerp &f, const char *name, bool save_repeat=false, const std::string &description="")' at line 87 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/datafile.hxx
  'void Datafile::add(Vector2D &f, const char *name, bool save_repeat=false, const std::string &description="")' at line 89 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/datafile.hxx
  'void Datafile::add(Vector3D &f, const char *name, bool save_repeat=false, const std::string &description="")' at line 91 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/datafile.hxx
  'void InterpolationFactory::add(CreateInterpCallback interp, const std::string &name)' at line 63 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/interpolation_factory.hxx
  'void multioutbuf< char_type, traits >::add(std::basic_ostream< char_type, traits > &str)' at line 19 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/multiostream.hxx
  'void multiostream< char_type, traits >::add(std::basic_ostream< char_type, traits > &str)' at line 84 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/multiostream.hxx
  'void Output::add(std::basic_ostream< char, _Tr > &str)' at line 105 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/output.hxx
  'void SlepcSolver::add(Field2D &v, const std::string &name, const std::string &description="") override' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/slepc/slepc.hxx
  'void SlepcSolver::add(Field3D &v, const std::string &name, const std::string &description="") override' at line 106 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/slepc/slepc.hxx
  'void SlepcSolver::add(Vector2D &v, const std::string &name, const std::string &description="") override' at line 113 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/slepc/slepc.hxx
  'void SlepcSolver::add(Vector3D &v, const std::string &name, const std::string &description="") override' at line 120 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/slepc/slepc.hxx
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/boundary_factory.cxx:326: warning: no uniquely matching class member found for 
  void BoundaryFactory::add(BoundaryOpPar *bop, const string &name)
Possible candidates:
  'void BoundaryFactory::add(BoundaryOp *bop, const std::string &name)' at line 81 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/boundary_factory.hxx
  'void BoundaryFactory::add(BoundaryOp *bop, const char *name)' at line 88 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/boundary_factory.hxx
  'void BoundaryFactory::add(BoundaryOpPar *bop, const std::string &name)' at line 101 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/boundary_factory.hxx
  'void BoundaryFactory::add(BoundaryOpPar *bop, const char *name)' at line 102 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/boundary_factory.hxx
  'void FieldGroup::add(const FieldGroup &other)' at line 70 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/fieldgroup.hxx
  'void FieldGroup::add(FieldData &f)' at line 86 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/fieldgroup.hxx
  'void FieldGroup::add(Field3D &f)' at line 95 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/fieldgroup.hxx
  'void FieldGroup::add(Vector2D &v)' at line 105 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/fieldgroup.hxx
  'void FieldGroup::add(Vector3D &v)' at line 116 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/fieldgroup.hxx
  'template < Ts >
  void FieldGroup::add(FieldData &t, Ts &... ts)' at line 131 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/fieldgroup.hxx
  'template < Ts >
  void FieldGroup::add(Field3D &t, Ts &... ts)' at line 137 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/fieldgroup.hxx
  'template < Ts >
  void FieldGroup::add(Vector3D &t, Ts &... ts)' at line 143 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/fieldgroup.hxx
  'template < Ts >
  void FieldGroup::add(Vector2D &t, Ts &... ts)' at line 149 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/fieldgroup.hxx
  'virtual bool Factory< BaseType, TypeCreator >::add(const std::string &name, TypeCreator creator)' at line 42 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/generic_factory.hxx
  'virtual void Solver::add(Field2D &v, const std::string &name, const std::string &description="")' at line 236 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/solver.hxx
  'virtual void Solver::add(Field3D &v, const std::string &name, const std::string &description="")' at line 237 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/solver.hxx
  'virtual void Solver::add(Vector2D &v, const std::string &name, const std::string &description="")' at line 238 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/solver.hxx
  'virtual void Solver::add(Vector3D &v, const std::string &name, const std::string &description="")' at line 239 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/solver.hxx
  'void Datafile::add(int &i, const char *name, bool save_repeat=false, const std::string &description="")' at line 73 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/datafile.hxx
  'void Datafile::add(std::vector< int > &ivec, const char *name, bool save_repeat=false, const std::string &description="")' at line 75 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/datafile.hxx
  'void Datafile::add(std::string &s, const char *name, bool save_repeat=false, const std::string &description="")' at line 77 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/datafile.hxx
  'void Datafile::add(BoutReal &r, const char *name, bool save_repeat=false, const std::string &description="")' at line 79 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/datafile.hxx
  'void Datafile::add(bool &b, const char *name, bool save_repeat=false, const std::string &description="")' at line 81 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/datafile.hxx
  'void Datafile::add(Field2D &f, const char *name, bool save_repeat=false, const std::string &description="")' at line 83 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/datafile.hxx
  'void Datafile::add(Field3D &f, const char *name, bool save_repeat=false, const std::string &description="")' at line 85 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/datafile.hxx
  'void Datafile::add(FieldPerp &f, const char *name, bool save_repeat=false, const std::string &description="")' at line 87 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/datafile.hxx
  'void Datafile::add(Vector2D &f, const char *name, bool save_repeat=false, const std::string &description="")' at line 89 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/datafile.hxx
  'void Datafile::add(Vector3D &f, const char *name, bool save_repeat=false, const std::string &description="")' at line 91 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/datafile.hxx
  'void InterpolationFactory::add(CreateInterpCallback interp, const std::string &name)' at line 63 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/interpolation_factory.hxx
  'void multioutbuf< char_type, traits >::add(std::basic_ostream< char_type, traits > &str)' at line 19 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/multiostream.hxx
  'void multiostream< char_type, traits >::add(std::basic_ostream< char_type, traits > &str)' at line 84 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/multiostream.hxx
  'void Output::add(std::basic_ostream< char, _Tr > &str)' at line 105 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/output.hxx
  'void SlepcSolver::add(Field2D &v, const std::string &name, const std::string &description="") override' at line 99 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/slepc/slepc.hxx
  'void SlepcSolver::add(Field3D &v, const std::string &name, const std::string &description="") override' at line 106 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/slepc/slepc.hxx
  'void SlepcSolver::add(Vector2D &v, const std::string &name, const std::string &description="") override' at line 113 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/slepc/slepc.hxx
  'void SlepcSolver::add(Vector3D &v, const std::string &name, const std::string &description="") override' at line 120 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/slepc/slepc.hxx
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/boundary_factory.cxx:339: warning: no matching class member found for 
  void BoundaryFactory::addMod(BoundaryModifier *bmod, const string &name)
Possible candidates:
  'void BoundaryFactory::addMod(BoundaryModifier *bmod, const std::string &name)' at line 93 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/boundary_factory.hxx
  'void BoundaryFactory::addMod(BoundaryModifier *bmod, const char *name)' at line 98 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/boundary_factory.hxx
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/coordinates.cxx:1229: warning: no matching class member found for 
  Field2D Coordinates::DDZ(const MAYBE_UNUSED(Field2D &f), CELL_LOC loc, const std::string &method, const std::string &region)
Possible candidates:
  'Field2D Coordinates::DDZ(const Field2D &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT", const std::string &region="RGN_NOBNDRY")' at line 184 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/coordinates.hxx
  'Field2D Coordinates::DDZ(const Field2D &f, CELL_LOC outloc, const std::string &method, REGION region)' at line 186 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/coordinates.hxx
  'Field2D Coordinates::DDZ(const Field2D &f, CELL_LOC outloc, DIFF_METHOD method, REGION region=RGN_NOBNDRY)' at line 186 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/coordinates.hxx
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/coordinates.cxx:1244: warning: no matching class member found for 
  Field2D Coordinates::Grad_par(const Field2D &var, MAYBE_UNUSED(CELL_LOC outloc), const std::string &method)
Possible candidates:
  'Field2D Coordinates::Grad_par(const Field2D &var, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT")' at line 189 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/coordinates.hxx
  'Field2D Coordinates::Grad_par(const Field2D &f, CELL_LOC outloc, DIFF_METHOD method)' at line 191 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/coordinates.hxx
  'Field3D Coordinates::Grad_par(const Field3D &var, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT")' at line 193 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/coordinates.hxx
  'Field3D Coordinates::Grad_par(const Field3D &f, CELL_LOC outloc, DIFF_METHOD method)' at line 195 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/coordinates.hxx
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/coordinates.cxx:1265: warning: no matching class member found for 
  Field2D Coordinates::Vpar_Grad_par(const Field2D &v, const Field2D &f, MAYBE_UNUSED(CELL_LOC outloc), const std::string &method)
Possible candidates:
  'Field2D Coordinates::Vpar_Grad_par(const Field2D &v, const Field2D &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT")' at line 198 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/coordinates.hxx
  'Field2D Coordinates::Vpar_Grad_par(const Field2D &v, const Field2D &f, CELL_LOC outloc, DIFF_METHOD method)' at line 203 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/coordinates.hxx
  'Field3D Coordinates::Vpar_Grad_par(const Field3D &v, const Field3D &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT")' at line 208 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/coordinates.hxx
  'Field3D Coordinates::Vpar_Grad_par(const Field3D &v, const Field3D &f, CELL_LOC outloc, DIFF_METHOD method)' at line 213 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/coordinates.hxx
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/index_derivs.cxx:59: warning: no matching class member found for 
  STAGGER Mesh::getStagger(CELL_LOC vloc, MAYBE_UNUSED(CELL_LOC inloc), const CELL_LOC outloc, const CELL_LOC allowedStaggerLoc) const
Possible candidates:
  'STAGGER Mesh::getStagger(const CELL_LOC inloc, const CELL_LOC outloc, const CELL_LOC allowedloc) const' at line 662 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/mesh.hxx
  'STAGGER Mesh::getStagger(const CELL_LOC vloc, const CELL_LOC inloc, const CELL_LOC outloc, const CELL_LOC allowedloc) const' at line 669 of file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/mesh.hxx
.cxx...
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error: Problems running latex. Check your installation or look for typos in _formulas.tex and check _formulas.log!
sh: line 1: latex: command not found
error: Problems running latex. Check your installation or look for typos in _formulas_dark.tex and check _formulas_dark.log!
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/bout_enum_class.hxx:68: warning: Unsupported xml/html tag <enum> found
enmpi/include/bout/coordinates.hxx...
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Gener/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/difops.hxx:290: warning: The following parameter of Div_par_K_Grad_par(BoutReal kY, const Field2D &f, CELL_LOC outloc=CELL_DEFAULT) is not documented:
  parameter 'outloc'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/difops.hxx:198: warning: The following parameter of Grad2_par2(const Field2D &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT") is not documented:
  parameter 'method'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/gyro_average.hxx:52: warning: argument 'flags' of command @param is not found in the argument list of gyroPade0(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags)
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/gyro_average.hxx:52: warning: The following parameters of gyroPade0(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) are not documented:
  parameter 'inner_boundary_flags'
  parameter 'outer_boundary_flags'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/gyro_average.hxx:84: warning: argument 'flags' of command @param is not found in the argument list of gyroPade1(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags)
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/gyro_average.hxx:84: warning: The following parameters of gyroPade1(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) are not documented:
  parameter 'inner_boundary_flags'
  parameter 'outer_boundary_flags'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/gyro_average.hxx:120: warning: argument 'flags' of command @param is not found in the argument list of gyroPade2(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags)
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/gyro_average.hxx:120: warning: The following parameters of gyroPade2(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) are not documented:
  parameter 'inner_boundary_flags'
  parameter 'outer_boundary_flags'
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Generating docs for fil/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/difops.hxx:290: warning: The following parameter of Div_par_K_Grad_par(BoutReal kY, const Field2D &f, CELL_LOC outloc=CELL_DEFAULT) is not documented:
  parameter 'outloc'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/difops.hxx:198: warning: The following parameter of Grad2_par2(const Field2D &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT") is not documented:
  parameter 'method'
e /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/spt/spt.hxx...
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Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/interpolation/bilinear.cxx...
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Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/meshfactory.cxx...
Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/meshfactory.hxx...
Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/parallel/fci.cxx...
Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/parallel/fci.hxx...
Generating docs for file /b/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/gyro_average.hxx:52: warning: argument 'flags' of command @param is not found in the argument list of gyroPade0(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags)
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/gyro_average.hxx:52: warning: The following parameters of gyroPade0(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) are not documented:
  parameter 'inner_boundary_flags'
  parameter 'outer_boundary_flags'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/gyro_average.hxx:84: warning: argument 'flags' of command @param is not found in the argument list of gyroPade1(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags)
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/gyro_average.hxx:84: warning: The following parameters of gyroPade1(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) are not documented:
  parameter 'inner_boundary_flags'
  parameter 'outer_boundary_flags'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/gyro_average.hxx:120: warning: argument 'flags' of command @param is not found in the argument list of gyroPade2(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags)
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/gyro_average.hxx:120: warning: The following parameters of gyroPade2(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) are not documented:
  parameter 'inner_boundary_flags'
  parameter 'outer_boundary_flags'
uilddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/parallel/identity.cxx...
Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/parallel/shiftedmetric.cxx...
Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/mesh/parallel_boundary_op.cxx...
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Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/physics/gyro_average.cxx...
Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/physics/physicsmodel.cxx...
Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/physics/smoothing.cxx...
Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/physics/snb.cxx...
Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/physics/sourcex.cxx...
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Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/power/power.cxx...
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Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/pvode/pvode.cxx...
Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/pvode/pvode.hxx...
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Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rkgeneric/impls/cashkarp/cashkarp.hxx...
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Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/impls/rkgeneric/impls/rkf45/rkf45.hxx...
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Generating docs for file /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/solver/solverfactory.cxx...
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/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx:203: warning: The following parameter of DataFormat::getAttribute(const std::string &varname, const std::string &attrname, BoutReal &value)=0 is not documented:
  parameter 'value'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx:187: warning: The following parameter of DataFormat::getAttribute(const std::string &varname, const std::string &attrname, int &value)=0 is not documented:
  parameter 'value'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx:171: warning: The following parameter of DataFormat::getAttribute(const std::string &varname, const std::string &attrname, std::string &text)=0 is not documented:
  parameter 'text'
build/BUILD/BOUT++-v4.4.2/build_openmpi/src/sys/utils.cxx...
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Generating docs for compound /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/generic_factory.hxx:52: warning: The following parameter of Factory::create(const std::string &name, Args &&... args) is not documented:
  parameter 'args'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/field2d.hxx:58: warning: The following parameters of Field2D::Field2D(Mesh *localmesh=nullptr, CELL_LOC location_in=CELL_CENTRE, DirectionTypes directions_in={YDirectionType::Standard, ZDirectionType::Average}) are not documented:
  parameter 'location_in'
  parameter 'directions_in'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/griddata.hxx:208: warning: The following parameter of GridFromOptions::get(Mesh *mesh, BoutReal &rval, const std::string &name, BoutReal def=0.0) is not documented:
  parameter 'def'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/griddata.hxx:182: warning: The following parameter of GridFromOptions::get(Mesh *mesh, std::string &sval, const std::string &name, const std::string &def="") is not documented:
  parameter 'def'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx:203: warning: The following parameter of H5Format::getAttribute(const std::string &varname, const std::string &attrname, BoutReal &value) is not documented:
  parameter 'value'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx:187: warning: The following parameter of H5Format::getAttribute(const std::string &varname, const std::string &attrname, int &value) is not documented:
  parameter 'value'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx:171: warning: The following parameter of H5Format::getAttribute(const std::string &varname, const std::string &attrname, std::string &text) is not documented:
  parameter 'text'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/petsc/petsc_laplace.cxx:908: warning: argument 'coef1' from the argument list of LaplacePetsc::Coeffs has multiple @param documentation sections
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/petsc/petsc_laplace.cxx:908: warning: argument 'coef2' from the argument list of LaplacePetsc::Coeffs has multiple @param documentation sections
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/petsc/petsc_laplace.cxx:908: warning: argument 'coef3' from the argument list of LaplacePetsc::Coeffs has multiple @param documentation sections
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/petsc/petsc_laplace.cxx:908: warning: argument 'coef4' from the argument list of LaplacePetsc::Coeffs has multiple @param documentation sections
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/petsc/petsc_laplace.cxx:908: warning: argument 'coef5' from the argument list of LaplacePetsc::Coeffs has multiple @param documentation sections
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/petsc/petsc_laplace.cxx:851: warning: argument 'MatA' from the argument list of LaplacePetsc::Element has multiple @param documentation sections
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/invert_laplace.hxx:208: warning: The following parameters of Laplacian::create(Options *opt=nullptr, const CELL_LOC loc=CELL_CENTRE, Mesh *mesh_in=nullptr) are not documented:
  parameter 'loc'
  parameter 'mesh_in'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/invert_laplace.cxx:380: warning: argument 'avec' from the argument list of Laplacian::tridagMatrix has multiple @param documentation sections
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/invert_laplace.cxx:380: warning: argument 'bvec' from the argument list of Laplacian::tridagMatrix has multiple @param documentation sections
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/invert_laplace.cxx:380: warning: argument 'cvec' from the argument list of Laplacian::tridagMatrix has multiple @param documentation sections
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/mesh.hxx:756: warning: argument 'v' of command @param is not found in the argument list of Mesh::indexVDDX(const T &vel, const T &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT", REGION region=RGN_NOBNDRY) const
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/mesh.hxx:756: warning: The following parameter of Mesh::indexVDDX(const T &vel, const T &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT", REGION region=RGN_NOBNDRY) const is not documented:
  parameter 'vel'
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Generating d/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx:203: warning: The following parameter of NcFormat::getAttribute(const std::string &varname, const std::string &attrname, BoutReal &value) is not documented:
  parameter 'value'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx:187: warning: The following parameter of NcFormat::getAttribute(const std::string &varname, const std::string &attrname, int &value) is not documented:
  parameter 'value'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx:171: warning: The following parameter of NcFormat::getAttribute(const std::string &varname, const std::string &attrname, std::string &text) is not documented:
  parameter 'text'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx:203: warning: The following parameter of Ncxx4::getAttribute(const std::string &varname, const std::string &attrname, BoutReal &value) is not documented:
  parameter 'value'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx:187: warning: The following parameter of Ncxx4::getAttribute(const std::string &varname, const std::string &attrname, int &value) is not documented:
  parameter 'value'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx:171: warning: The following parameter of Ncxx4::getAttribute(const std::string &varname, const std::string &attrname, std::string &text) is not documented:
  parameter 'text'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/options.hxx:161: warning: argument 'parent' of command @param is not found in the argument list of Options::Options(Options *parent_instance, std::string full_name)
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/options.hxx:161: warning: argument 'sectionName' of command @param is not found in the argument list of Options::Options(Options *parent_instance, std::string full_name)
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/options.hxx:161: warning: The following parameters of Options::Options(Options *parent_instance, std::string full_name) are not documented:
  parameter 'parent_instance'
  parameter 'full_name'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/physicsmodel.hxx:229: warning: The following parameter of PhysicsModel::bout_solve(Field2D &var, const char *name, const std::string &description="") is not documented:
  parameter 'description'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/paralleltransform.hxx:259: warning: The following parameter of ShiftedMetric::shiftZ(const Field3D &f, const Field2D &zangle, const std::string &region="RGN_NOX") const is not documented:
  parameter 'region'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/paralleltransform.hxx:275: warning: The following parameter of ShiftedMetric::shiftZ(const Field3D &f, const Tensor< dcomplex > &phs, const YDirectionType y_direction_out, const std::string &region="RGN_NOX") const is not documented:
  parameter 'region'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/surfaceiter.hxx:35: warning: The following parameter of SurfaceIter::SurfaceIter(Mesh *mesh, bool include_guards=false) is not documented:
  parameter 'include_guards'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/index_derivs_interface.hxx:276: warning: argument 'v' of command @param is not found in the argument list of bout::derivatives::index::VDDX(const T &vel, const T &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT", const std::string &region="RGN_NOBNDRY")
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/index_derivs_interface.hxx:276: warning: The following parameter of bout::derivatives::index::VDDX(const T &vel, const T &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT", const std::string &region="RGN_NOBNDRY") is not documented:
  parameter 'vel'
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Generating XML output for class BoundaryDivCurl
Generating XML output for class BoundaryFactory
Generating XML output for class Boundar/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx:171: warning: The following parameter of DataFormat::getAttribute(const std::string &varname, const std::string &attrname, std::string &text)=0 is not documented:
  parameter 'text'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx:187: warning: The following parameter of DataFormat::getAttribute(const std::string &varname, const std::string &attrname, int &value)=0 is not documented:
  parameter 'value'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx:203: warning: The following parameter of DataFormat::getAttribute(const std::string &varname, const std::string &attrname, BoutReal &value)=0 is not documented:
  parameter 'value'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/generic_factory.hxx:52: warning: The following parameter of Factory::create(const std::string &name, Args &&... args) is not documented:
  parameter 'args'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/field2d.hxx:58: warning: The following parameters of Field2D::Field2D(Mesh *localmesh=nullptr, CELL_LOC location_in=CELL_CENTRE, DirectionTypes directions_in={YDirectionType::Standard, ZDirectionType::Average}) are not documented:
  parameter 'location_in'
  parameter 'directions_in'
yFree
Generating XML output for class BoundaryFree_O2
Generating XML output for class BoundaryFree_O3
Generating XML output for class BoundaryFromFieldAligned
Generating XML output for class BoundaryModifier
Generating XML output for class BoundaryNeumann
Generating XML output for class BoundaryNeumann2
Generating XML output for class BoundaryNeumann_2ndOrder
Generating XML output for class BoundaryNeumann_4thOrder
Generating XML output for class BoundaryNeumann_NonOrthogonal
Generating XML output for class BoundaryNeumann_O4
Generating XML output for class BoundaryNeumannPar
Generating XML output for class BoundaryOp
Generating XML output for class BoundaryOpBase
Generating XML output for class BoundaryOpPar
Generating XML output for class BoundaryOpPar_dirichlet
Generating XML output for class BoundaryOpPar_dirichlet_interp
Generating XML output for class BoundaryOpPar_dirichlet_O3
Generating XML output for class BoundaryOpPar_neumann
Generating XML output for class BoundaryRegion
Generating XML output for class BoundaryRegionBase
Generating XML output for class BoundaryRegionPar
Generating XML output for class BoundaryRegionXIn
Generating XML output for class BoundaryRegionXOut
Generating XML output for class BoundaryRegionYDown
Generating XML output for class BoundaryRegionYUp
Generating XML output for class BoundaryRelax
Generating XML output for class BoundaryRobin
Generating XML output for class BoundaryToFieldAligned
Generating XML output for class BoundaryWidth
Generating XML output for class BoundaryZeroLaplace
Generating XML output for class BoundaryZeroLaplace2
Generating XML output for class BoutComm
Generating XML output for class BoutException
Generating XML output for class BoutIterationFail
Generating XML output for class BoutMask
Generating XML output for class BoutMesh
Generating XML output for class BoutMonitor
Generating XML output for class BoutRhsFail
Generating XML output for class CASHKARPScheme
Generating XML output for class bout::experimental::CommandLineArgs
Generating XML output for class BoutMesh::CommHandle
Generating XML output for class bout::utils::details::CompareTypes
Generating XML output for class bout::utils::details::CompareTypes< T, T >
Generating XML output for class ConditionalOutput
Generating XML output for class Coordinates
Generating XML output for class pvode::CVodeMemRec
Generating XML output for class CvodeSolver
Generating XML output for class CyclicReduce
Generating XML output for class Datafile
Generating XML output for class DataFormat
Generating XML output for class DeferredFunction
Generating XML output for class DerivativeStore
Generating XML output for class DerivativeType
Generating XML output for class DirectionTypes
Generating XML output for class Divide
Generating XML output for class DummyOutput
Generating XML output for class EmptyFormat
Generating XML output for class enumWrapper
Generating XML output for class EulerSolver
Generating XML output for class ExpressionParser
Generating XML output for class exprTraits
Generating XML output for class exprTraits< double >
Generating XML output for class exprTraits< float >
Generating XML output for class exprTraits< int >
Generating XML output for class Factory
Generating XML output for class FCIMap
Generating XML output for class FCITransform
Generating XML output for class fcmplx
Generating XML output for class Field
Generating XML output for class gen_fieldops::Field
Generating XML output for class Field2D
Generating XML output for class Field2DExpr
Generating XML output for class Field3D
Generating XML output for class Field3DExpr
Generating XML output for class FieldAbs
Generating XML output for class FieldATan
Generating XML output for class FieldBallooning
Generating XML output for class FieldBinary
Generating XML output for class FieldCos
Generating XML output for class FieldCosh
Generating XML output for class FieldData
Generating XML output for class FieldErf
Generating XML output for class FieldFactory
Generating XML output for class FieldFunction
Generating XML output for class FieldGaussian
Generatin/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/griddata.hxx:182: warning: The following parameter of GridFromOptions::get(Mesh *mesh, std::string &sval, const std::string &name, const std::string &def="") is not documented:
  parameter 'def'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/griddata.hxx:208: warning: The following parameter of GridFromOptions::get(Mesh *mesh, BoutReal &rval, const std::string &name, BoutReal def=0.0) is not documented:
  parameter 'def'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx:171: warning: The following parameter of H5Format::getAttribute(const std::string &varname, const std::string &attrname, std::string &text) is not documented:
  parameter 'text'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx:187: warning: The following parameter of H5Format::getAttribute(const std::string &varname, const std::string &attrname, int &value) is not documented:
  parameter 'value'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx:203: warning: The following parameter of H5Format::getAttribute(const std::string &varname, const std::string &attrname, BoutReal &value) is not documented:
  parameter 'value'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/petsc/petsc_laplace.cxx:851: warning: argument 'MatA' from the argument list of LaplacePetsc::Element has multiple @param documentation sections
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/petsc/petsc_laplace.cxx:908: warning: argument 'coef1' from the argument list of LaplacePetsc::Coeffs has multiple @param documentation sections
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/petsc/petsc_laplace.cxx:908: warning: argument 'coef2' from the argument list of LaplacePetsc::Coeffs has multiple @param documentation sections
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/petsc/petsc_laplace.cxx:908: warning: argument 'coef3' from the argument list of LaplacePetsc::Coeffs has multiple @param documentation sections
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/petsc/petsc_laplace.cxx:908: warning: argument 'coef4' from the argument list of LaplacePetsc::Coeffs has multiple @param documentation sections
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/impls/petsc/petsc_laplace.cxx:908: warning: argument 'coef5' from the argument list of LaplacePetsc::Coeffs has multiple @param documentation sections
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/invert_laplace.hxx:208: warning: The following parameters of Laplacian::create(Options *opt=nullptr, const CELL_LOC loc=CELL_CENTRE, Mesh *mesh_in=nullptr) are not documented:
  parameter 'loc'
  parameter 'mesh_in'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/invert_laplace.cxx:380: warning: argument 'avec' from the argument list of Laplacian::tridagMatrix has multiple @param documentation sections
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/invert_laplace.cxx:380: warning: argument 'bvec' from the argument list of Laplacian::tridagMatrix has multiple @param documentation sections
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/src/invert/laplace/invert_laplace.cxx:380: warning: argument 'cvec' from the argument list of Laplacian::tridagMatrix has multiple @param documentation sections
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/mesh.hxx:756: warning: argument 'v' of command @param is not found in the argument list of Mesh::indexVDDX(const T &vel, const T &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT", REGION region=RGN_NOBNDRY) const
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/mesh.hxx:756: warning: The following parameter of Mesh::indexVDDX(const T &vel, const T &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT", REGION region=RGN_NOBNDRY) const is not documented:
  parameter 'vel'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx:171: warning: The following parameter of NcFormat::getAttribute(const std::string &varname, const std::string &attrname, std::string &text) is not documented:
  parameter 'text'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx:187: warning: The following parameter of NcFormat::getAttribute(const std::string &varname, const std::string &attrname, int &value) is not documented:
  parameter 'value'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx:203: warning: The following parameter of NcFormat::getAttribute(const std::string &varname, const std::string &attrname, BoutReal &value) is not documented:
  parameter 'value'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx:171: warning: The following parameter of Ncxx4::getAttribute(const std::string &varname, const std::string &attrname, std::string &text) is not documented:
  parameter 'text'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx:187: warning: The following parameter of Ncxx4::getAttribute(const std::string &varname, const std::string &attrname, int &value) is not documented:
  parameter 'value'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/dataformat.hxx:203: warning: The following parameter of Ncxx4::getAttribute(const std::string &varname, const std::string &attrname, BoutReal &value) is not documented:
  parameter 'value'
g XML output for class FieldGenerator
Generating XML output for class FieldGenOneArg
Generating XML output for class FieldGenTwoArg
Generating XML output for class FieldGroup
Generating XML output for class FieldHeaviside
Generating XML output for class FieldMax
Generating XML output for class FieldMin
Generating XML output for class FieldMixmode
Generating XML output for class FieldNull
Generating XML output for class FieldPerp
Generating XML output for class FieldRound
Generating XML output for class FieldSin
Generating XML output for class FieldSinh
Generating XML output for class FieldSqrt
Generating XML output for class FieldTanh
Generating XML output for class FieldTanhHat
Generating XML output for class FieldValue
Generating XML output for class FieldValuePtr
Generating XML output for class FieldVisitor
Generating XML output for class FormatFactory
Generating XML output for class FV::Fromm
Generating XML output for class bout::utils::function_traits
Generating XML output for class bout::utils::function_traits< R(*)(Args...)>
Generating XML output for class GlobalField
Generating XML output for class GlobalField2D
Generating XML output for class GlobalField3D
Generating XML output for class GridDataSource
Generating XML output for class GridFile
Generating XML output for class GridFromOptions
Generating XML output for class H5Format
Generating XML output for class std::hash< uuids::uuid >
Generating XML output for class bout::HeatFluxSNB
Generating XML output for class HermiteSpline
Generating XML output for class IdaSolver
Generating XML output for class IMEXBDF2
Generating XML output for class BoundaryRegionPar::IndexPoint
Generating XML output for class BoundaryRegionPar::Indices
Generating XML output for class Interpolation
Generating XML output for class InterpolationFactory
Generating XML output for class bout::inversion::InvertableOperator
Generating XML output for class InvertPar
Generating XML output for class InvertParCR
Generating XML output for class bout::utils::details::IsEqual
Generating XML output for class KarniadakisSolver
Generating XML output for class Lagrange4pt
Generating XML output for class LaplaceCyclic
Generating XML output for class LaplaceFactory
Generating XML output for class LaplaceMultigrid
Generating XML output for class LaplaceMumps
Generating XML output for class LaplaceNaulin
Generating XML output for class LaplacePDD
Generating XML output for class LaplacePetsc
Generating XML output for class LaplaceSerialBand
Generating XML output for class LaplaceSerialTri
Generating XML output for class LaplaceShoot
Generating XML output for class LaplaceSPT
Generating XML output for class LaplaceXY
Generating XML output for class LaplaceXY::LaplaceXYMonitor
Generating XML output for class LaplaceXZ
Generating XML output for class LaplaceXZcyclic
Generating XML output for class LaplaceXZpetsc
Generating XML output for class Laplacian
Generating XML output for class LegacyModel
Generating XML output for class ExpressionParser::LexInfo
Generating XML output for class Literal
Generating XML output for class LoadVarOp
Generating XML output for class pvode::machenv_type
Generating XML output for class Matrix
Generating XML output for class FV::MC
Generating XML output for class Mesh
Generating XML output for class MeshFactory
Generating XML output for class metaData
Generating XML output for class FV::MinMod
Generating XML output for class Monitor
Generating XML output for class MonotonicHermiteSpline
Generating XML output for class MsgStack
Generating XML output for class MsgStackItem
Generating XML output for class Multigrid1DP
Generating XML output for class Multigrid2DPf1D
Generating XML output for class MultigridAlg
Generating XML output for class MultigridSerial
Generating XML output for class multiostream
Generating XML output for class multioutbuf
Generating XML output for class multioutbuf_init
Generating XML output for class Multiply
Generating XML output for class NcFormat
Generating XML output for class Ncxx4
Generating XML output for class pvode::nvec_type
Generating XML output for c/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/options.hxx:161: warning: argument 'parent' of command @param is not found in the argument list of Options::Options(Options *parent_instance, std::string full_name)
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/options.hxx:161: warning: argument 'sectionName' of command @param is not found in the argument list of Options::Options(Options *parent_instance, std::string full_name)
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/options.hxx:161: warning: The following parameters of Options::Options(Options *parent_instance, std::string full_name) are not documented:
  parameter 'parent_instance'
  parameter 'full_name'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/physicsmodel.hxx:229: warning: The following parameter of PhysicsModel::bout_solve(Field2D &var, const char *name, const std::string &description="") is not documented:
  parameter 'description'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/paralleltransform.hxx:259: warning: The following parameter of ShiftedMetric::shiftZ(const Field3D &f, const Field2D &zangle, const std::string &region="RGN_NOX") const is not documented:
  parameter 'region'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/paralleltransform.hxx:275: warning: The following parameter of ShiftedMetric::shiftZ(const Field3D &f, const Tensor< dcomplex > &phs, const YDirectionType y_direction_out, const std::string &region="RGN_NOX") const is not documented:
  parameter 'region'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/surfaceiter.hxx:35: warning: The following parameter of SurfaceIter::SurfaceIter(Mesh *mesh, bool include_guards=false) is not documented:
  parameter 'include_guards'
lass OptionINI
Generating XML output for class OptionParser
Generating XML output for class Options
Generating XML output for class bout::experimental::OptionsNetCDF
Generating XML output for class OptionsReader
Generating XML output for class Options::OptionValue
Generating XML output for class Output
Generating XML output for class ShiftedMetric::ParallelSlicePhase
Generating XML output for class ParallelTransform
Generating XML output for class ParallelTransformIdentity
Generating XML output for class ParDerivFactory
Generating XML output for class ParseException
Generating XML output for class LaplacePDD::PDD_data
Generating XML output for class PetscLib
Generating XML output for class PetscSolver
Generating XML output for class PhysicsModel
Generating XML output for class PhysicsModel::PhysicsModelMonitor
Generating XML output for class PncFormat
Generating XML output for class Power
Generating XML output for class PowerSolver
Generating XML output for class produceCombinations
Generating XML output for class PromoteType
Generating XML output for class pvode::pvbbddata_type
Generating XML output for class PvodeSolver
Generating XML output for class RangeIterator
Generating XML output for class BoundaryRegionPar::RealPoint
Generating XML output for class Region
Generating XML output for class RegionStats
Generating XML output for class RegisterInFactory
Generating XML output for class RegisterInFactory< Solver, DerivedType >
Generating XML output for class registerMethod
Generating XML output for class RK3SSP
Generating XML output for class RK4SIMPLEScheme
Generating XML output for class RK4Solver
Generating XML output for class RKF34Scheme
Generating XML output for class RKF45Scheme
Generating XML output for class RKGenericSolver
Generating XML output for class RKScheme
Generating XML output for class RKSchemeFactory
Generating XML output for class RunMetrics
Generating XML output for class SaveDerivsOp
Generating XML output for class SaveVarOp
Generating XML output for class Set
Generating XML output for class uuids::detail::sha1
Generating XML output for class ShiftedMetric
Generating XML output for class SlepcLib
Generating XML output for class SlepcSolver
Generating XML output for class snes_info
Generating XML output for class SNESSolver
Generating XML output for class Solver
Generating XML output for class SolverFactory
Generating XML output for class SpecificInd
Generating XML output for class pvode::SpgmrMemRec
Generating XML output for class SplitFluxDerivativeType
Generating XML output for class SplitRK
Generating XML output for class LaplaceSPT::SPT_data
Generating XML output for class bout::utils::details::StaticCastOrThrow
Generating XML output for class stencil
Generating XML output for class FV::Stencil1D
Generating XML output for class Subtract
Generating XML output for class SurfaceIter
Generating XML output for class Tensor
Generating XML output for class Timer
Generating XML output for class Timer::timer_info
Generating XML output for class bout::utils::details::ToString
Generating XML output for class TypeContainer
Generating XML output for class Uncopyable
Generating XML output for class FV::Upwind
Generating XML output for class uuids::uuid
Generating XML output for class uuids::uuid_name_generator
Generating XML output for class uuids::uuid_time_generator
Generating XML output for class Datafile::VarStr
Generating XML output for class Solver::VarStr
Generating XML output for class Vector2D
Generating XML output for class Vector3D
Generating XML output for class LaplaceXZpetsc::YSlice
Generating XML output for namespace @110
Generating XML output for namespace @111
Generating XML output for namespace @125
Generating XML output for namespace @178
Generating XML output for namespace @179
Generating XML output for namespace @180
Generating XML output for namespace @192
Generating XML output for namespace @207
Generating XML output for namespace @208
Generating XML output for namespace @210
Generating XML output for namespace @212
Generating XML output for namespace @214
Generating XML output for n/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/index_derivs_interface.hxx:276: warning: argument 'v' of command @param is not found in the argument list of bout::derivatives::index::VDDX(const T &vel, const T &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT", const std::string &region="RGN_NOBNDRY")
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/index_derivs_interface.hxx:276: warning: The following parameter of bout::derivatives::index::VDDX(const T &vel, const T &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT", const std::string &region="RGN_NOBNDRY") is not documented:
  parameter 'vel'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/sys/variant.hxx:81: warning: Found unknown command '\v'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/sys/variant.hxx:118: warning: Found unknown command '\v'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/bout/bout_enum_class.hxx:68: warning: Unsupported xml/html tag <enum> found
amespace @216
Generating XML output for namespace @218
Generating XML output for namespace @220
Generating XML output for namespace @222
Generating XML output for namespace @224
Generating XML output for namespace @226
Generating XML output for namespace @228
Generating XML output for namespace @230
Generating XML output for namespace @240
Generating XML output for namespace @245
Generating XML output for namespace @247
Generating XML output for namespace @249
Generating XML output for namespace @252
Generating XML output for namespace @256
Generating XML output for namespace @258
Generating XML output for namespace @262
Generating XML output for namespace @5
Generating XML output for namespace bout
Generating XML output for namespace bout::derivatives
Generating XML output for namespace bout::derivatives::index
Generating XML output for namespace bout::experimental
Generating XML output for namespace bout::fft
Generating XML output for namespace bout::globals
Generating XML output for namespace bout::inversion
Generating XML output for namespace bout::utils
Generating XML output for namespace bout::utils::details
Generating XML output for namespace FV
Generating XML output for namespace gen_fieldops
Generating XML output for namespace netCDF
Generating XML output for namespace pvode
Generating XML output for namespace SI
Generating XML output for namespace std
Generating XML output for namespace uuids
Generating XML output for namespace uuids::detail
Generating XML output for file boundary_factory.hxx
Generating XML output for file boundary_op.hxx
Generating XML output for file boundary_region.hxx
Generating XML output for file boundary_standard.hxx
Generating XML output for file bout.hxx
Generating XML output for file array.hxx
Generating XML output for file assert.hxx
Generating XML output for file bout_enum_class.hxx
Generating XML output for file constants.hxx
Generating XML output for file coordinates.hxx
Generating XML output for file deprecated.hxx
Generating XML output for file deriv_store.hxx
Generating XML output for file expr.hxx
Generating XML output for file field_visitor.hxx
Generating XML output for file fieldgroup.hxx
Generating XML output for file format.hxx
Generating XML output for file fv_ops.hxx
Generating XML output for file generic_factory.hxx
Generating XML output for file globalfield.hxx
Generating XML output for file griddata.hxx
Generating XML output for file index_derivs.hxx
Generating XML output for file index_derivs_interface.hxx
Generating XML output for file laplacexy.hxx
Generating XML output for file laplacexz.hxx
Generating XML output for file invertable_operator.hxx
Generating XML output for file macro_for_each.hxx
Generating XML output for file mesh.hxx
Generating XML output for file monitor.hxx
Generating XML output for file openmpwrap.hxx
Generating XML output for file paralleltransform.hxx
Generating XML output for file petsclib.hxx
Generating XML output for file physicsmodel.hxx
Generating XML output for file region.hxx
Generating XML output for file rkscheme.hxx
Generating XML output for file rvec.hxx
Generating XML output for file scorepwrapper.hxx
Generating XML output for file slepclib.hxx
Generating XML output for file snb.hxx
Generating XML output for file solver.hxx
Generating XML output for file solverfactory.hxx
Generating XML output for file surfaceiter.hxx
Generating XML output for file expressionparser.hxx
Generating XML output for file gettext.hxx
Generating XML output for file range.hxx
Generating XML output for file timer.hxx
Generating XML output for file type_name.hxx
Generating XML output for file uncopyable.hxx
Generating XML output for file uuid.h
Generating XML output for file variant.hxx
Generating XML output for file template_combinations.hxx
Generating XML output for file traits.hxx
Generating XML output for file bout_types.hxx
Generating XML output for file boutcomm.hxx
Generating XML output for file boutexception.hxx
Generating XML output for file boutmain.hxx
Generating XML output for file cyclic_reduction.hxx
Generating XML output for file datafile.hxx/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/difops.hxx:198: warning: The following parameter of Grad2_par2(const Field2D &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT") is not documented:
  parameter 'method'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/difops.hxx:290: warning: The following parameter of Div_par_K_Grad_par(BoutReal kY, const Field2D &f, CELL_LOC outloc=CELL_DEFAULT) is not documented:
  parameter 'outloc'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/gyro_average.hxx:52: warning: argument 'flags' of command @param is not found in the argument list of gyroPade0(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags)
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/gyro_average.hxx:52: warning: The following parameters of gyroPade0(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) are not documented:
  parameter 'inner_boundary_flags'
  parameter 'outer_boundary_flags'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/gyro_average.hxx:84: warning: argument 'flags' of command @param is not found in the argument list of gyroPade1(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags)
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/gyro_average.hxx:84: warning: The following parameters of gyroPade1(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) are not documented:
  parameter 'inner_boundary_flags'
  parameter 'outer_boundary_flags'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/gyro_average.hxx:120: warning: argument 'flags' of command @param is not found in the argument list of gyroPade2(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags)
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/gyro_average.hxx:120: warning: The following parameters of gyroPade2(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) are not documented:
  parameter 'inner_boundary_flags'
  parameter 'outer_boundary_flags'
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/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/difops.hxx:198: warning: The following parameter of Grad2_par2(const Field2D &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT") is not documented:
  parameter 'method'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/difops.hxx:290: warning: The following parameter of Div_par_K_Grad_par(BoutReal kY, const Field2D &f, CELL_LOC outloc=CELL_DEFAULT) is not documented:
  parameter 'outloc'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/gyro_average.hxx:52: warning: argument 'flags' of command @param is not found in the argument list of gyroPade0(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags)
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/gyro_average.hxx:52: warning: The following parameters of gyroPade0(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) are not documented:
  parameter 'inner_boundary_flags'
  parameter 'outer_boundary_flags'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/gyro_average.hxx:84: warning: argument 'flags' of command @param is not found in the argument list of gyroPade1(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags)
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/gyro_average.hxx:84: warning: The following parameters of gyroPade1(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) are not documented:
  parameter 'inner_boundary_flags'
  parameter 'outer_boundary_flags'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/gyro_average.hxx:120: warning: argument 'flags' of command @param is not found in the argument list of gyroPade2(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags)
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/include/gyro_average.hxx:120: warning: The following parameters of gyroPade2(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) are not documented:
  parameter 'inner_boundary_flags'
  parameter 'outer_boundary_flags'
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Running plantuml with JAVA...
type lookup cache used 18676/65536 hits=185173 misses=19455
symbol lookup cache used 21545/65536 hits=227687 misses=21545
finished...
PYTHONPATH=../tools/pylib:$PYTHONPATH sphinx-build-3 -b html sphinx/ html/
Running Sphinx v5.3.0
WARNING: Invalid configuration value found: 'language = None'. Update your configuration to a valid language code. Falling back to 'en' (English).
breathe module not installed
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making output directory... done
building [mo]: targets for 0 po files that are out of date
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No module named 'enthought'
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/usr/lib/python3.11/site-packages/boututils/calculus.py:docstring of boututils.calculus.deriv2D:14: ERROR: Unexpected indentation.
WARNING: autodoc: failed to import module 'contour' from module 'boututils'; the following exception was raised:
No module named 'boututils.contour'
WARNING: autodoc: failed to import module 'crosslines' from module 'boututils'; the following exception was raised:
No module named 'past'
WARNING: autodoc: failed to import module 'efit_analyzer' from module 'boututils'; the following exception was raised:
No module named 'past'
WARNING: autodoc: failed to import module 'fft_deriv' from module 'boututils'; the following exception was raised:
No module named 'past'
WARNING: autodoc: failed to import module 'int_func' from module 'boututils'; the following exception was raised:
No module named 'past'
WARNING: autodoc: failed to import module 'mode_structure' from module 'boututils'; the following exception was raised:
No module named 'past'
WARNING: autodoc: failed to import module 'moment_xyzt' from module 'boututils'; the following exception was raised:
No module named 'past'
WARNING: autodoc: failed to import module 'plotpolslice' from module 'boututils'; the following exception was raised:
No module named 'past'
WARNING: autodoc: failed to import module 'radial_grid' from module 'boututils'; the following exception was raised:
No module named 'past'
WARNING: autodoc: failed to import module 'surface_average' from module 'boututils'; the following exception was raised:
No module named 'past'
WARNING: autodoc: failed to import module 'volume_integral' from module 'boututils'; the following exception was raised:
No module named 'past'
/usr/lib/python3.11/site-packages/boututils/__init__.py:docstring of boututils:1: WARNING: duplicate object description of boututils, other instance in _apidoc/boututils, use :noindex: for one of them
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tools/pylib/zoidberg/field.py:docstring of zoidberg.field.MagneticField.attributes:1: WARNING: duplicate object description of zoidberg.field.MagneticField.attributes, other instance in _apidoc/zoidberg, use :noindex: for one of them
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tools/pylib/zoidberg/field.py:docstring of zoidberg.field.MagneticField.boundary:1: WARNING: duplicate object description of zoidberg.field.MagneticField.boundary, other instance in _apidoc/zoidberg, use :noindex: for one of them
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tools/pylib/zoidberg/__init__.py:docstring of zoidberg:1: WARNING: duplicate object description of zoidberg, other instance in _apidoc/zoidberg, use :noindex: for one of them
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tools/pylib/zoidberg/__init__.py:docstring of zoidberg.zoidberg.make_maps:1: WARNING: duplicate object description of zoidberg.make_maps, other instance in _apidoc/zoidberg, use :noindex: for one of them
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tools/pylib/zoidberg/__init__.py:docstring of zoidberg.zoidberg.write_maps:1: WARNING: duplicate object description of zoidberg.write_maps, other instance in _apidoc/zoidberg, use :noindex: for one of them
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/api_reference.rst:4: WARNING: toctree glob pattern '_breathe_autogen/*' didn't match any documents
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/data_types.rst:75: WARNING: Definition list ends without a blank line; unexpected unindent.
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/user_docs/bout_options.rst:533: ERROR: Unexpected indentation.
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/user_docs/installing.rst:416: ERROR: Unexpected indentation.
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/user_docs/installing.rst:417: WARNING: Block quote ends without a blank line; unexpected unindent.
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/user_docs/nonlocal.rst:119: WARNING: malformed hyperlink target.
/usr/lib/python3.11/site-packages/boututils/__init__.py:docstring of boututils:1: WARNING: duplicate object description of boututils, other instance in _apidoc/boututils, use :noindex: for one of them
/usr/lib/python3.11/site-packages/boutdata/__init__.py:docstring of boutdata:1: WARNING: duplicate object description of boutdata, other instance in _apidoc/boutdata, use :noindex: for one of them
/usr/lib/python3.11/site-packages/boutdata/__init__.py:docstring of boutdata.collect.attributes:1: WARNING: duplicate object description of boutdata.attributes, other instance in _apidoc/boutdata, use :noindex: for one of them
/usr/lib/python3.11/site-packages/boutdata/__init__.py:docstring of boutdata.collect.collect:1: WARNING: duplicate object description of boutdata.collect, other instance in _apidoc/boutdata, use :noindex: for one of them
WARNING: autodoc: failed to import module 'boutcore'; the following exception was raised:
/usr/lib64/openmpi/lib/libpetsc.so.3.17: undefined symbol: H5Pset_dxpl_mpio
WARNING: autodoc: failed to import module 'boutcore'; the following exception was raised:
/usr/lib64/openmpi/lib/libpetsc.so.3.17: undefined symbol: H5Pset_dxpl_mpio
looking for now-outdated files... WARNING: autodoc: failed to import module 'boutcore'; the following exception was raised:
/usr/lib64/openmpi/lib/libpetsc.so.3.17: undefined symbol: H5Pset_dxpl_mpio
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/user_docs/running_bout.rst:445: WARNING: Literal block expected; none found.
none found
pickling environment... done
checking consistency... done
preparing documents... done
writing output... [  2%] _apidoc/boutdata
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writing output... [  7%] _apidoc/zoidberg
writing output... [  9%] api_reference
writing output... [ 12%] developer_docs/code_layout
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writing output... [ 31%] index
writing output... [ 34%] user_docs/BOUT_Gradperp_op
writing output... [ 36%] user_docs/advanced_install
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writing output... [ 75%] user_docs/parallel-transforms
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writing output... [ 85%] user_docs/python
writing output... [ 87%] user_docs/python_boutcore
writing output... [ 90%] user_docs/running_bout
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writing output... [ 95%] user_docs/testing
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writing output... [100%] user_docs/variable_init
/usr/lib/python3.11/site-packages/boutdata/restart.py:docstring of boutdata.restart.addnoise:1: WARNING: undefined label: 'random-quick-start'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:81: WARNING: unknown document: '../_breathe_autogen/file/bout_09_09_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:87: WARNING: unknown document: '../_breathe_autogen/file/field2d_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:93: WARNING: unknown document: '../_breathe_autogen/file/field3d_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:100: WARNING: unknown document: '../_breathe_autogen/file/field__data_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:105: WARNING: unknown document: '../_breathe_autogen/file/fieldperp_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:112: WARNING: unknown document: '../_breathe_autogen/file/initialprofiles_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:117: WARNING: unknown document: '../_breathe_autogen/file/vecops_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:117: WARNING: unknown document: '../_breathe_autogen/file/difops_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:124: WARNING: unknown document: '../_breathe_autogen/file/vector2d_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:129: WARNING: unknown document: '../_breathe_autogen/file/vector3d_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:133: WARNING: unknown document: '../_breathe_autogen/file/where_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:139: WARNING: unknown document: '../_breathe_autogen/file/datafile_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:145: WARNING: unknown document: '../_breathe_autogen/file/formatfactory_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:147: WARNING: unknown document: '../_breathe_autogen/file/formatfactory_8hxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:151: WARNING: unknown document: '../_breathe_autogen/file/emptyformat_8hxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:155: WARNING: unknown document: '../_breathe_autogen/file/h5__format_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:158: WARNING: unknown document: '../_breathe_autogen/file/h5__format_8hxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:162: WARNING: unknown document: '../_breathe_autogen/file/nc__format_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:165: WARNING: unknown document: '../_breathe_autogen/file/nc__format_8hxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:169: WARNING: unknown document: '../_breathe_autogen/file/ncxx4_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:173: WARNING: unknown document: '../_breathe_autogen/file/ncxx4_8hxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:177: WARNING: unknown document: '../_breathe_autogen/file/pnetcdf_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:180: WARNING: unknown document: '../_breathe_autogen/file/pnetcdf_8hxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:184: WARNING: unknown document: '../_breathe_autogen/file/fft__fftw_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:184: WARNING: unknown document: '../_breathe_autogen/file/fft_8hxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:193: WARNING: unknown document: '../_breathe_autogen/file/invert__laplace_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:195: WARNING: unknown document: '../_breathe_autogen/file/laplacefactory_8hxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:197: WARNING: unknown document: '../_breathe_autogen/file/laplacefactory_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:203: WARNING: unknown document: '../_breathe_autogen/file/serial__tri_8hxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:205: WARNING: unknown document: '../_breathe_autogen/file/serial__tri_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:209: WARNING: unknown document: '../_breathe_autogen/file/serial__band_8hxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:211: WARNING: unknown document: '../_breathe_autogen/file/serial__band_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:215: WARNING: unknown document: '../_breathe_autogen/file/spt_8hxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:217: WARNING: unknown document: '../_breathe_autogen/file/spt_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:221: WARNING: unknown document: '../_breathe_autogen/file/pdd_8hxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:223: WARNING: unknown document: '../_breathe_autogen/file/pdd_8cxx'
generating indices... genindex /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:228: WARNING: unknown document: '../_breathe_autogen/file/invert__parderiv_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:232: WARNING: unknown document: '../_breathe_autogen/file/parderiv__factory_8hxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:234: WARNING: unknown document: '../_breathe_autogen/file/parderiv__factory_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:240: WARNING: unknown document: '../_breathe_autogen/file/serial_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:242: WARNING: unknown document: '../_breathe_autogen/file/serial_8hxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:246: WARNING: unknown document: '../_breathe_autogen/file/cyclic_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:248: WARNING: unknown document: '../_breathe_autogen/file/cyclic_8hxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:252: WARNING: unknown document: '../_breathe_autogen/file/lapack__routines_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:256: WARNING: unknown document: '../_breathe_autogen/file/boundary__factory_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:260: WARNING: unknown document: '../_breathe_autogen/file/boundary__region_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:265: WARNING: unknown document: '../_breathe_autogen/file/boundary__standard_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:269: WARNING: unknown document: '../_breathe_autogen/file/difops_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:269: WARNING: unknown document: '../_breathe_autogen/file/derivs_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:274: WARNING: unknown document: '../_breathe_autogen/file/interpolation_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:277: WARNING: unknown document: '../_breathe_autogen/file/mesh_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:285: WARNING: unknown document: '../_breathe_autogen/file/boutmesh_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:289: WARNING: unknown document: '../_breathe_autogen/file/boutmesh_8hxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:294: WARNING: unknown document: '../_breathe_autogen/file/gyro__average_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:296: WARNING: unknown document: '../_breathe_autogen/file/smoothing_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:299: WARNING: unknown document: '../_breathe_autogen/file/sourcex_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:305: WARNING: unknown document: '../_breathe_autogen/file/solver_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:308: WARNING: unknown document: '../_breathe_autogen/file/solverfactory_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:311: WARNING: unknown document: '../_breathe_autogen/file/solverfactory_8hxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:317: WARNING: unknown document: '../_breathe_autogen/file/cvode_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:321: WARNING: unknown document: '../_breathe_autogen/file/cvode_8hxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:325: WARNING: unknown document: '../_breathe_autogen/file/ida_8cxx'
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/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:333: WARNING: unknown document: '../_breathe_autogen/file/petsc_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:336: WARNING: unknown document: '../_breathe_autogen/file/petsc_8hxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:340: WARNING: unknown document: '../_breathe_autogen/file/pvode_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:344: WARNING: unknown document: '../_breathe_autogen/file/pvode_8hxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:348: WARNING: unknown document: '../_breathe_autogen/file/boutcomm_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:350: WARNING: unknown document: '../_breathe_autogen/file/boutexception_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:353: WARNING: unknown document: '../_breathe_autogen/file/derivs_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:353: WARNING: unknown document: '../_breathe_autogen/file/difops_8cxx'
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/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:359: WARNING: unknown document: '../_breathe_autogen/file/msg__stack_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:366: WARNING: unknown document: '../_breathe_autogen/file/options_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:370: WARNING: unknown document: '../_breathe_autogen/file/optionsreader_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:372: WARNING: unknown document: '../_breathe_autogen/file/output_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:374: WARNING: unknown document: '../_breathe_autogen/file/range_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:378: WARNING: unknown document: '../_breathe_autogen/file/stencils_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:382: WARNING: unknown document: '../_breathe_autogen/file/timer_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:386: WARNING: unknown document: '../_breathe_autogen/file/utils_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:392: WARNING: unknown document: '../_breathe_autogen/file/optionparser_8hxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:394: WARNING: unknown document: '../_breathe_autogen/file/options__ini_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:396: WARNING: unknown document: '../_breathe_autogen/file/options__ini_8hxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/data_types.rst:385: WARNING: Unparseable C++ cross-reference: 'mesh:maxregionblocksize'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected end of definition. [error at 4]
    mesh:maxregionblocksize
    ----^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expecting "(" in parameters-and-qualifiers. [error at 4]
      mesh:maxregionblocksize
      ----^
  If the function has a return type:
    Error in declarator or parameters-and-qualifiers
    If pointer to member declarator:
      Invalid C++ declaration: Expected identifier in nested name. [error at 4]
        mesh:maxregionblocksize
        ----^
    If declarator-id:
      Invalid C++ declaration: Expected identifier in nested name. [error at 4]
        mesh:maxregionblocksize
        ----^
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/data_types.rst:385: WARNING: Unparseable C++ cross-reference: 'BOUT.inp'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected end of definition. [error at 4]
    BOUT.inp
    ----^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expecting "(" in parameters-and-qualifiers. [error at 4]
      BOUT.inp
      ----^
  If the function has a return type:
    Error in declarator or parameters-and-qualifiers
    If pointer to member declarator:
      Invalid C++ declaration: Expected identifier in nested name. [error at 4]
        BOUT.inp
        ----^
    If declarator-id:
      Invalid C++ declaration: Expected identifier in nested name. [error at 4]
        BOUT.inp
        ----^
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/file_io.rst:4: WARNING: unknown document: '../_breathe_autogen/file/griddata_8hxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/file_io.rst:4: WARNING: unknown document: '../_breathe_autogen/file/datafile_8hxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/file_io.rst:4: WARNING: unknown document: '../_breathe_autogen/file/datafile_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/file_io.rst:13: WARNING: unknown document: '../_breathe_autogen/file/dataformat_8hxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/file_io.rst:268: WARNING: Unparseable C++ cross-reference: 'restart.redistribute'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected end of definition. [error at 7]
    restart.redistribute
    -------^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expecting "(" in parameters-and-qualifiers. [error at 7]
      restart.redistribute
      -------^
  If the function has a return type:
    Error in declarator or parameters-and-qualifiers
    If pointer to member declarator:
      Invalid C++ declaration: Expected identifier in nested name. [error at 7]
        restart.redistribute
        -------^
    If declarator-id:
      Invalid C++ declaration: Expected identifier in nested name. [error at 7]
        restart.redistribute
        -------^
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/developer_docs/mesh.rst:31: WARNING: unknown document: '../_breathe_autogen/file/bout_09_09_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/user_docs/algebraic_operators.rst:8: WARNING: unknown document: '../_breathe_autogen/file/field2d_8hxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/user_docs/algebraic_operators.rst:8: WARNING: unknown document: '../_breathe_autogen/file/field3d_8hxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/user_docs/algebraic_operators.rst:8: WARNING: unknown document: '../_breathe_autogen/file/fieldperp_8hxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/user_docs/differential_operators.rst:182: WARNING: Unparseable C++ cross-reference: 'return\n0.5*(f.p - f.m);'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected identifier in nested name, got keyword: return [error at 6]
    return
  0.5*(f.p - f.m);
    ------^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expected identifier in nested name, got keyword: return [error at 6]
      return
    0.5*(f.p - f.m);
      ------^
  If the function has a return type:
    Invalid C++ declaration: Expected identifier in nested name, got keyword: return [error at 6]
      return
    0.5*(f.p - f.m);
      ------^
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/user_docs/differential_operators.rst:192: WARNING: Unparseable C++ cross-reference: '"C2"'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected identifier in nested name. [error at 0]
    "C2"
    ^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expected identifier in nested name. [error at 0]
      "C2"
      ^
  If the function has a return type:
    Invalid C++ declaration: Expected identifier in nested name. [error at 0]
      "C2"
      ^
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/user_docs/differential_operators.rst:196: WARNING: Unparseable C++ cross-reference: '1'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected identifier in nested name. [error at 0]
    1
    ^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expected identifier in nested name. [error at 0]
      1
      ^
  If the function has a return type:
    Invalid C++ declaration: Expected identifier in nested name. [error at 0]
      1
      ^
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/user_docs/differential_operators.rst:221: WARNING: Unparseable C++ cross-reference: 'REGISTER_DERIVATIVE(DDX_C2)()'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected end of definition. [error at 19]
    REGISTER_DERIVATIVE(DDX_C2)()
    -------------------^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Invalid C++ declaration: Expected end of definition or ;. [error at 27]
      REGISTER_DERIVATIVE(DDX_C2)()
      ---------------------------^
  If the function has a return type:
    Error in declarator
    If declarator-id with parameters-and-qualifiers:
      Invalid C++ declaration: Expected identifier in nested name. [error at 19]
        REGISTER_DERIVATIVE(DDX_C2)()
        -------------------^
    If parenthesis in noptr-declarator:
      Error in declarator or parameters-and-qualifiers
      If pointer to member declarator:
        Invalid C++ declaration: Expected '::' in pointer to member (function). [error at 26]
          REGISTER_DERIVATIVE(DDX_C2)()
          --------------------------^
      If declarator-id:
        Invalid C++ declaration: Expecting "(" in parameters-and-qualifiers. [error at 26]
          REGISTER_DERIVATIVE(DDX_C2)()
          --------------------------^
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/user_docs/differential_operators.rst:238: WARNING: Unparseable C++ cross-reference: '"C2"'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected identifier in nested name. [error at 0]
    "C2"
    ^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expected identifier in nested name. [error at 0]
      "C2"
      ^
  If the function has a return type:
    Invalid C++ declaration: Expected identifier in nested name. [error at 0]
      "C2"
      ^
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/user_docs/differential_operators.rst:530: WARNING: unknown document: '../_breathe_autogen/file/fv__ops_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/user_docs/differential_operators.rst:538: WARNING: unknown document: '../_breathe_autogen/file/fv__ops_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/user_docs/differential_operators.rst:278: WARNING: Could not lex literal_block as "cpp". Highlighting skipped.
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/user_docs/installing.rst:190: WARNING: Unparseable C++ cross-reference: 'export LC_CTYPE=C.utf8'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected identifier in nested name, got keyword: export [error at 6]
    export LC_CTYPE=C.utf8
    ------^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expected identifier in nested name, got keyword: export [error at 6]
      export LC_CTYPE=C.utf8
      ------^
  If the function has a return type:
    Invalid C++ declaration: Expected identifier in nested name, got keyword: export [error at 6]
      export LC_CTYPE=C.utf8
      ------^
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/user_docs/installing.rst:423: WARNING: Unparseable C++ cross-reference: '-DBOUT_IGNORE_CONDA_ENV=ON'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected identifier in nested name. [error at 0]
    -DBOUT_IGNORE_CONDA_ENV=ON
    ^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expected identifier in nested name. [error at 0]
      -DBOUT_IGNORE_CONDA_ENV=ON
      ^
  If the function has a return type:
    Invalid C++ declaration: Expected identifier in nested name. [error at 0]
      -DBOUT_IGNORE_CONDA_ENV=ON
      ^
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/user_docs/installing.rst:436: WARNING: Failed to create a cross reference. A title or caption not found: 'sec-install-bout'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/user_docs/invertable_operator.rst:30: WARNING: Unparseable C++ cross-reference: 'examples/invertable_operator'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected end of definition. [error at 8]
    examples/invertable_operator
    --------^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expecting "(" in parameters-and-qualifiers. [error at 8]
      examples/invertable_operator
      --------^
  If the function has a return type:
    Error in declarator or parameters-and-qualifiers
    If pointer to member declarator:
      Invalid C++ declaration: Expected identifier in nested name. [error at 8]
        examples/invertable_operator
        --------^
    If declarator-id:
      Invalid C++ declaration: Expected identifier in nested name. [error at 8]
        examples/invertable_operator
        --------^
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/user_docs/invertable_operator.rst:98: WARNING: Unparseable C++ cross-reference: '-invertable'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected identifier in nested name. [error at 0]
    -invertable
    ^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expected identifier in nested name. [error at 0]
      -invertable
      ^
  If the function has a return type:
    Invalid C++ declaration: Expected identifier in nested name. [error at 0]
      -invertable
      ^
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/user_docs/invertable_operator.rst:98: WARNING: Unparseable C++ cross-reference: '-ksp_type'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected identifier in nested name. [error at 0]
    -ksp_type
    ^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expected identifier in nested name. [error at 0]
      -ksp_type
      ^
  If the function has a return type:
    Invalid C++ declaration: Expected identifier in nested name. [error at 0]
      -ksp_type
      ^
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/user_docs/invertable_operator.rst:98: WARNING: Unparseable C++ cross-reference: '-invertable_ksp_type'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected identifier in nested name. [error at 0]
    -invertable_ksp_type
    ^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expected identifier in nested name. [error at 0]
      -invertable_ksp_type
      ^
  If the function has a return type:
    Invalid C++ declaration: Expected identifier in nested name. [error at 0]
      -invertable_ksp_type
      ^
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/user_docs/laplacian.rst:186: WARNING: unknown document: '../_breathe_autogen/file/invert__laplace_8cxx'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/user_docs/nonlocal.rst:117: WARNING: undefined label: 'tab-snb-options'
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/user_docs/output_and_post.rst:659: WARNING: Unparseable C++ cross-reference: '"zzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzz"'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected identifier in nested name. [error at 0]
    "zzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzz"
    ^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expected identifier in nested name. [error at 0]
      "zzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzz"
      ^
  If the function has a return type:
    Invalid C++ declaration: Expected identifier in nested name. [error at 0]
      "zzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzzz"
      ^
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/user_docs/output_and_post.rst:587: WARNING: Could not lex literal_block as "mathematica". Highlighting skipped.
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/user_docs/running_bout.rst:119: WARNING: Unparseable C++ cross-reference: 'https://xbout.readthedocs.io/en/latest'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected end of definition. [error at 5]
    https://xbout.readthedocs.io/en/latest
    -----^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expecting "(" in parameters-and-qualifiers. [error at 5]
      https://xbout.readthedocs.io/en/latest
      -----^
  If the function has a return type:
    Error in declarator or parameters-and-qualifiers
    If pointer to member declarator:
      Invalid C++ declaration: Expected identifier in nested name. [error at 5]
        https://xbout.readthedocs.io/en/latest
        -----^
    If declarator-id:
      Invalid C++ declaration: Expected identifier in nested name. [error at 5]
        https://xbout.readthedocs.io/en/latest
        -----^
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/user_docs/running_bout.rst:464: WARNING: Unparseable C++ cross-reference: 'https://en.wikipedia.org/wiki/Universally_unique_identifier'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected end of definition. [error at 5]
    https://en.wikipedia.org/wiki/Universally_unique_identifier
    -----^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expecting "(" in parameters-and-qualifiers. [error at 5]
      https://en.wikipedia.org/wiki/Universally_unique_identifier
      -----^
  If the function has a return type:
    Error in declarator or parameters-and-qualifiers
    If pointer to member declarator:
      Invalid C++ declaration: Expected identifier in nested name. [error at 5]
        https://en.wikipedia.org/wiki/Universally_unique_identifier
        -----^
    If declarator-id:
      Invalid C++ declaration: Expected identifier in nested name. [error at 5]
        https://en.wikipedia.org/wiki/Universally_unique_identifier
        -----^
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/user_docs/running_bout.rst:537: WARNING: Unparseable C++ cross-reference: 'https://xbout.readthedocs.io/en/latest'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected end of definition. [error at 5]
    https://xbout.readthedocs.io/en/latest
    -----^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expecting "(" in parameters-and-qualifiers. [error at 5]
      https://xbout.readthedocs.io/en/latest
      -----^
  If the function has a return type:
    Error in declarator or parameters-and-qualifiers
    If pointer to member declarator:
      Invalid C++ declaration: Expected identifier in nested name. [error at 5]
        https://xbout.readthedocs.io/en/latest
        -----^
    If declarator-id:
      Invalid C++ declaration: Expected identifier in nested name. [error at 5]
        https://xbout.readthedocs.io/en/latest
        -----^
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/user_docs/running_bout.rst:537: WARNING: Unparseable C++ cross-reference: 'https://xbout.readthedocs.io/en/latest/xbout.html#xbout.boutdataset.BoutDatasetAccessor.to_restart'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected end of definition. [error at 5]
    https://xbout.readthedocs.io/en/latest/xbout.html#xbout.boutdataset.BoutDatasetAccessor.to_restart
    -----^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expecting "(" in parameters-and-qualifiers. [error at 5]
      https://xbout.readthedocs.io/en/latest/xbout.html#xbout.boutdataset.BoutDatasetAccessor.to_restart
      -----^
  If the function has a return type:
    Error in declarator or parameters-and-qualifiers
    If pointer to member declarator:
      Invalid C++ declaration: Expected identifier in nested name. [error at 5]
        https://xbout.readthedocs.io/en/latest/xbout.html#xbout.boutdataset.BoutDatasetAccessor.to_restart
        -----^
    If declarator-id:
      Invalid C++ declaration: Expected identifier in nested name. [error at 5]
        https://xbout.readthedocs.io/en/latest/xbout.html#xbout.boutdataset.BoutDatasetAccessor.to_restart
        -----^
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/user_docs/time_integration.rst:366: WARNING: Unparseable C++ cross-reference: 'predictor = false'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected end of definition. [error at 10]
    predictor = false
    ----------^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expecting "(" in parameters-and-qualifiers. [error at 10]
      predictor = false
      ----------^
  If the function has a return type:
    Error in declarator or parameters-and-qualifiers
    If pointer to member declarator:
      Invalid C++ declaration: Expected identifier in nested name. [error at 10]
        predictor = false
        ----------^
    If declarator-id:
      Invalid C++ declaration: Expected identifier in nested name. [error at 10]
        predictor = false
        ----------^
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/sphinx/user_docs/time_integration.rst:960: WARNING: unknown document: '../_breathe_autogen/file/bout_09_09_8cxx'
py-modindex done
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dumping search index in English (code: en)... done
dumping object inventory... done
build succeeded, 162 warnings.
The HTML pages are in html.
Documentation available in file:///builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual/html/index.html
make: Leaving directory '/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/manual'
+ '[' openmpi = mpich ']'
+ '[' openmpi = openmpi ']'
+ . /etc/profile.d/modules.sh
++ '[' -n /bin/sh ']'
++ '[' sh = sh ']'
++ shell=sh
++ '[' -f /usr/share/Modules/init/sh ']'
++ . /usr/share/Modules/init/sh
+++ unset _mlshdbg
+++ '[' 0 = 1 ']'
+++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD'
+++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD'
+++ unset _mlre _mlIFS
+++ '[' -n x ']'
+++ _mlIFS=' 	
'
+++ IFS=' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
++++ eval 'echo ${LD_LIBRARY_PATH+x}'
+++++ echo x
+++ '[' -n x ']'
++++ eval 'echo ${LD_LIBRARY_PATH}'
+++++ echo /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/lib
+++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/lib'\'' '
+++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH
++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}'
+++++ echo
+++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
++++ eval 'echo ${LD_PRELOAD+x}'
+++++ echo
+++ '[' -n '' ']'
+++ _mlrv=MODULES_RUNENV_LD_PRELOAD
++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}'
+++++ echo
+++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' '
+++ '[' -n '__MODULES_QUAR_LD_LIBRARY_PATH='\''/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']'
+++ _mlre='eval __MODULES_QUAR_LD_LIBRARY_PATH='\''/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 '
++++ eval '__MODULES_QUAR_LD_LIBRARY_PATH='\''/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/lib'\''' 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++++ __MODULES_QUAR_LD_LIBRARY_PATH=/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/lib
+++++ LD_LIBRARY_PATH=
+++++ LD_PRELOAD=
+++++ __MODULES_QUARANTINE_SET=1
+++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++ _mlcode='_module_raw() {
   eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")";
   _mlstatus=$?;
   return $_mlstatus;
};
module() {
   local _mlredir=0;
   if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then
      if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then
         _mlredir=0;
      elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then
         _mlredir=1;
      fi;
   fi;
   case " $@ " in
      *'\'' --no-redirect '\''*) _mlredir=0 ;;
      *'\'' --redirect '\''*) _mlredir=1 ;;
   esac;
   if [ $_mlredir -eq 0 ]; then
      _module_raw "$@";
   else
      _module_raw "$@" 2>&1;
   fi;
};
ml() { module ml "$@"; };
MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD;
unset __MODULES_AUTOINIT_INPROGRESS;
MODULESHOME=/usr/share/Modules; export MODULESHOME;
test 0;'
+++ _mlret=0
+++ '[' -n x ']'
+++ IFS=' 	
'
+++ unset _mlIFS
+++ unset _mlre _mlv _mlrv
+++ '[' 0 -eq 0 ']'
+++ eval '_module_raw() {
   eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")";
   _mlstatus=$?;
   return $_mlstatus;
};
module() {
   local _mlredir=0;
   if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then
      if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then
         _mlredir=0;
      elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then
         _mlredir=1;
      fi;
   fi;
   case " $@ " in
      *'\'' --no-redirect '\''*) _mlredir=0 ;;
      *'\'' --redirect '\''*) _mlredir=1 ;;
   esac;
   if [ $_mlredir -eq 0 ]; then
      _module_raw "$@";
   else
      _module_raw "$@" 2>&1;
   fi;
};
ml() { module ml "$@"; };
MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD;
unset __MODULES_AUTOINIT_INPROGRESS;
MODULESHOME=/usr/share/Modules; export MODULESHOME;
test 0;'
++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl
++++ export MODULES_CMD
++++ unset __MODULES_AUTOINIT_INPROGRESS
++++ MODULESHOME=/usr/share/Modules
++++ export MODULESHOME
++++ test 0
+++ '[' /bin/sh '!=' '' ']'
+++ export -f _module_raw
+++ export -f module
++++ type -t ml
+++ '[' function = function ']'
+++ export -f ml
+++ unset _mlcode _mlret
+++ '[' -n '' ']'
+ module unload mpi/openmpi-x86_64
+ local _mlredir=0
+ '[' -n '' ']'
+ case " $@ " in
+ '[' 0 -eq 0 ']'
+ _module_raw unload mpi/openmpi-x86_64
++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh unload mpi/openmpi-x86_64
+ eval 'unset MPI_COMPILER;
LD_LIBRARY_PATH=/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/lib; export LD_LIBRARY_PATH;
MANPATH=/usr/share/man:; export MANPATH;
unset MPI_INCLUDE;
unset MPI_MAN;
unset _LMFILES_;
unset LOADEDMODULES;
PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH;
unset MPI_PYTHON3_SITEARCH;
unset MPI_HOME;
unset MPI_FORTRAN_MOD_DIR;
unset __MODULES_LMALTNAME;
unset __MODULES_LMCONFLICT;
__MODULES_SHARE_MANPATH=:1; export __MODULES_SHARE_MANPATH;
unset MPI_SUFFIX;
unset MPI_SYSCONFIG;
__MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH;
unset MPI_LIB;
PATH=/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH;
unset MPI_BIN;
~/build/BUILD/BOUT++-v4.4.2
test 0;'
++ unset MPI_COMPILER
++ LD_LIBRARY_PATH=/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/lib
++ export LD_LIBRARY_PATH
++ MANPATH=/usr/share/man:
++ export MANPATH
++ unset MPI_INCLUDE
++ unset MPI_MAN
++ unset _LMFILES_
++ unset LOADEDMODULES
++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig
++ export PKG_CONFIG_PATH
++ unset MPI_PYTHON3_SITEARCH
++ unset MPI_HOME
++ unset MPI_FORTRAN_MOD_DIR
++ unset __MODULES_LMALTNAME
++ unset __MODULES_LMCONFLICT
++ __MODULES_SHARE_MANPATH=:1
++ export __MODULES_SHARE_MANPATH
++ unset MPI_SUFFIX
++ unset MPI_SYSCONFIG
++ __MODULES_SHARE_PKG_CONFIG_PATH=:1
++ export __MODULES_SHARE_PKG_CONFIG_PATH
++ unset MPI_LIB
++ PATH=/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin
++ export PATH
++ unset MPI_BIN
++ test 0
+ _mlstatus=0
+ return 0
+ popd
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.aGDp6R
+ umask 022
+ cd /builddir/build/BUILD
+ '[' /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64 '!=' / ']'
+ rm -rf /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64
++ dirname /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer'
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer'
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules'
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
~/build/BUILD/BOUT++-v4.4.2/build_mpich ~/build/BUILD/BOUT++-v4.4.2
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes'
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd BOUT++-v4.4.2
+ for mpi in mpich openmpi
+ pushd build_mpich
+ '[' mpich = mpich ']'
+ . /etc/profile.d/modules.sh
++ '[' -n /bin/sh ']'
++ '[' sh = sh ']'
++ shell=sh
++ '[' -f /usr/share/Modules/init/sh ']'
++ . /usr/share/Modules/init/sh
+++ unset _mlshdbg
+++ '[' 0 = 1 ']'
+++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD'
+++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD'
+++ unset _mlre _mlIFS
+++ '[' -n x ']'
+++ _mlIFS=' 	
'
+++ IFS=' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
++++ eval 'echo ${LD_LIBRARY_PATH+x}'
+++++ echo
+++ '[' -n '' ']'
+++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH
++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}'
+++++ echo
+++ _mlre='LD_LIBRARY_PATH='\'''\'' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
++++ eval 'echo ${LD_PRELOAD+x}'
+++++ echo
+++ '[' -n '' ']'
+++ _mlrv=MODULES_RUNENV_LD_PRELOAD
++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}'
+++++ echo
+++ _mlre='LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' '
+++ '[' -n 'LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']'
+++ _mlre='eval LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 '
++++ eval 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++++ LD_LIBRARY_PATH=
+++++ LD_PRELOAD=
+++++ __MODULES_QUARANTINE_SET=1
+++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++ _mlcode='_module_raw() {
   eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")";
   _mlstatus=$?;
   return $_mlstatus;
};
module() {
   local _mlredir=0;
   if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then
      if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then
         _mlredir=0;
      elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then
         _mlredir=1;
      fi;
   fi;
   case " $@ " in
      *'\'' --no-redirect '\''*) _mlredir=0 ;;
      *'\'' --redirect '\''*) _mlredir=1 ;;
   esac;
   if [ $_mlredir -eq 0 ]; then
      _module_raw "$@";
   else
      _module_raw "$@" 2>&1;
   fi;
};
ml() { module ml "$@"; };
MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD;
unset __MODULES_AUTOINIT_INPROGRESS;
MODULESHOME=/usr/share/Modules; export MODULESHOME;
test 0;'
+++ _mlret=0
+++ '[' -n x ']'
+++ IFS=' 	
'
+++ unset _mlIFS
+++ unset _mlre _mlv _mlrv
+++ '[' 0 -eq 0 ']'
+++ eval '_module_raw() {
   eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")";
   _mlstatus=$?;
   return $_mlstatus;
};
module() {
   local _mlredir=0;
   if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then
      if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then
         _mlredir=0;
      elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then
         _mlredir=1;
      fi;
   fi;
   case " $@ " in
      *'\'' --no-redirect '\''*) _mlredir=0 ;;
      *'\'' --redirect '\''*) _mlredir=1 ;;
   esac;
   if [ $_mlredir -eq 0 ]; then
      _module_raw "$@";
   else
      _module_raw "$@" 2>&1;
   fi;
};
ml() { module ml "$@"; };
MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD;
unset __MODULES_AUTOINIT_INPROGRESS;
MODULESHOME=/usr/share/Modules; export MODULESHOME;
test 0;'
++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl
++++ export MODULES_CMD
++++ unset __MODULES_AUTOINIT_INPROGRESS
++++ MODULESHOME=/usr/share/Modules
++++ export MODULESHOME
++++ test 0
+++ '[' /bin/sh '!=' '' ']'
+++ export -f _module_raw
+++ export -f module
++++ type -t ml
+++ '[' function = function ']'
+++ export -f ml
+++ unset _mlcode _mlret
+++ '[' -n '' ']'
+ module load mpi/mpich-x86_64
+ local _mlredir=0
+ '[' -n '' ']'
+ case " $@ " in
+ '[' 0 -eq 0 ']'
+ _module_raw load mpi/mpich-x86_64
++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh load mpi/mpich-x86_64
+ eval 'LD_LIBRARY_PATH=/usr/lib64/mpich/lib; export LD_LIBRARY_PATH;
MPI_COMPILER=mpich-x86_64; export MPI_COMPILER;
MANPATH=/usr/share/man/mpich-x86_64:/usr/share/man:; export MANPATH;
MPI_INCLUDE=/usr/include/mpich-x86_64; export MPI_INCLUDE;
MPI_MAN=/usr/share/man/mpich-x86_64; export MPI_MAN;
MPI_PYTHON_SITEARCH=%\{python2_sitearch\}/mpich; export MPI_PYTHON_SITEARCH;
_LMFILES_=/usr/share/modulefiles/mpi/mpich-x86_64; export _LMFILES_;
LOADEDMODULES=mpi/mpich-x86_64; export LOADEDMODULES;
PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH;
MPI_PYTHON3_SITEARCH=/usr/lib64/python3.11/site-packages/mpich; export MPI_PYTHON3_SITEARCH;
MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich; export MPI_FORTRAN_MOD_DIR;
MPI_HOME=/usr/lib64/mpich; export MPI_HOME;
__MODULES_LMCONFLICT=mpi/mpich-x86_64\&mpi; export __MODULES_LMCONFLICT;
__MODULES_SHARE_MANPATH=:2; export __MODULES_SHARE_MANPATH;
MPI_SYSCONFIG=/etc/mpich-x86_64; export MPI_SYSCONFIG;
MPI_SUFFIX=_mpich; export MPI_SUFFIX;
__MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH;
MPI_PYTHON2_SITEARCH=%\{python2_sitearch\}/mpich; export MPI_PYTHON2_SITEARCH;
MPI_LIB=/usr/lib64/mpich/lib; export MPI_LIB;
PATH=/usr/lib64/mpich/bin:/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH;
MPI_BIN=/usr/lib64/mpich/bin; export MPI_BIN;
test 0;'
++ LD_LIBRARY_PATH=/usr/lib64/mpich/lib
++ export LD_LIBRARY_PATH
++ MPI_COMPILER=mpich-x86_64
++ export MPI_COMPILER
++ MANPATH=/usr/share/man/mpich-x86_64:/usr/share/man:
++ export MANPATH
++ MPI_INCLUDE=/usr/include/mpich-x86_64
++ export MPI_INCLUDE
++ MPI_MAN=/usr/share/man/mpich-x86_64
++ export MPI_MAN
++ MPI_PYTHON_SITEARCH='%{python2_sitearch}/mpich'
++ export MPI_PYTHON_SITEARCH
++ _LMFILES_=/usr/share/modulefiles/mpi/mpich-x86_64
++ export _LMFILES_
++ LOADEDMODULES=mpi/mpich-x86_64
++ export LOADEDMODULES
++ PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig
++ export PKG_CONFIG_PATH
++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.11/site-packages/mpich
++ export MPI_PYTHON3_SITEARCH
++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich
++ export MPI_FORTRAN_MOD_DIR
++ MPI_HOME=/usr/lib64/mpich
++ export MPI_HOME
++ __MODULES_LMCONFLICT='mpi/mpich-x86_64&mpi'
++ export __MODULES_LMCONFLICT
++ __MODULES_SHARE_MANPATH=:2
++ export __MODULES_SHARE_MANPATH
++ MPI_SYSCONFIG=/etc/mpich-x86_64
++ export MPI_SYSCONFIG
++ MPI_SUFFIX=_mpich
++ export MPI_SUFFIX
++ __MODULES_SHARE_PKG_CONFIG_PATH=:1
++ export __MODULES_SHARE_PKG_CONFIG_PATH
++ MPI_PYTHON2_SITEARCH='%{python2_sitearch}/mpich'
++ export MPI_PYTHON2_SITEARCH
++ MPI_LIB=/usr/lib64/mpich/lib
++ export MPI_LIB
++ PATH=/usr/lib64/mpich/bin:/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin
++ export PATH
++ MPI_BIN=/usr/lib64/mpich/bin
++ export MPI_BIN
++ test 0
+ _mlstatus=0
+ return 0
+ export 'CFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer'
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer'
+ make install DESTDIR=/builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64
# Pre-install commands follow.
# Normal commands follow.
/usr/bin/mkdir -p /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64/usr/include/mpich-x86_64/bout++//{,pvode,bout/sys,bout/invert}
/usr/bin/mkdir -p /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64/{/usr/lib64/mpich/lib,/usr/lib64/mpich/bin,/usr/share/bout++/idllib}
/usr/bin/install -c -m 644 include/*.hxx /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64/usr/include/mpich-x86_64/bout++/
/usr/bin/install -c -m 644 include/pvode/*.h /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64/usr/include/mpich-x86_64/bout++//pvode/
/usr/bin/install -c -m 644 include/bout/*.hxx /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64/usr/include/mpich-x86_64/bout++//bout/
/usr/bin/install -c -m 644 include/bout/sys/*.hxx /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64/usr/include/mpich-x86_64/bout++//bout/sys/
/usr/bin/install -c -m 644 include/bout/invert/*.hxx /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64/usr/include/mpich-x86_64/bout++//bout/invert/
/usr/bin/install -c lib/libbout++.so.4.4.0 /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64/usr/lib64/mpich/lib
/usr/bin/install -c lib/libpvode.so.* /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64/usr/lib64/mpich/lib
/usr/bin/install -c lib/libpvpre.so.* /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64/usr/lib64/mpich/lib
rm -f /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64/usr/lib64/mpich/lib/lib{bout++,pvode,pvpre}.so
ln -s libbout++.so.4.4.0 /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64/usr/lib64/mpich/lib/libbout++.so
ln -s libpvode.so.1.0.0 /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64/usr/lib64/mpich/lib/libpvode.so
ln -s libpvpre.so.1.0.0 /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64/usr/lib64/mpich/lib/libpvpre.so
/usr/bin/install -c  bin/bout-config /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64/usr/lib64/mpich/bin
/usr/bin/install -c  bin/bout-log-color /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64/usr/lib64/mpich/bin
/usr/bin/install -c -m 644  tools/idllib/*.pro /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64/usr/share/bout++/idllib/
/usr/bin/install -c -m 644  tools/idllib/README /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64/usr/share/bout++/idllib/
/usr/bin/install -c -m 644  make.config /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64/usr/include/mpich-x86_64/bout++/
for mo in de/LC_MESSAGES/libbout.mo es/LC_MESSAGES/libbout.mo fr/LC_MESSAGES/libbout.mo zh_CN/LC_MESSAGES/libbout.mo zh_TW/LC_MESSAGES/libbout.mo; do /usr/bin/mkdir -p /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64/usr/share/locale/`dirname $mo`; /usr/bin/install -c -m 644 locale/$mo /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64/usr/share/locale/$mo; done
# Post-install commands follow.
sed -i "s|^BOUT_INCLUDE_PATH=.*|BOUT_INCLUDE_PATH=/usr/include/mpich-x86_64/bout++|" /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64/usr/lib64/mpich/bin/bout-config 
sed -i "s|^BOUT_LIB_PATH=.*|BOUT_LIB_PATH=/usr/lib64/mpich/lib|" /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64/usr/lib64/mpich/bin/bout-config
sed -i "s|^BOUT_CONFIG_FILE=.*|BOUT_CONFIG_FILE=/usr/share/bout++/make.config|" /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64/usr/lib64/mpich/bin/bout-config
sed -i "s|^idlpath=.*|idlpath=/usr/share/bout++/idllib/|" /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64/usr/lib64/mpich/bin/bout-config
sed -i "s|^pythonpath=.*|pythonpath=/usr/share/bout++/pylib/|" /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64/usr/lib64/mpich/bin/bout-config
sed -i "s|^BOUT_INCLUDE_PATH=.*|BOUT_INCLUDE_PATH=/usr/include/mpich-x86_64/bout++|" /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64/usr/include/mpich-x86_64/bout++//make.config
sed -i "s|^BOUT_LIB_PATH=.*|BOUT_LIB_PATH=/usr/lib64/mpich/lib|" /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64/usr/include/mpich-x86_64/bout++//make.config
sed -i "s|^BOUT_CONFIG_FILE=.*|BOUT_CONFIG_FILE=/usr/include/mpich-x86_64/bout++/make.config|" /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64/usr/include/mpich-x86_64/bout++//make.config
sed -i '26 i RELEASED                 = yes' /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64/usr/include/mpich-x86_64/bout++//make.config
+ sed -i '27 i RELEASED                 = 4.4.2-6.fc38' /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64//usr/include/mpich-x86_64/bout++/make.config
+ rm -rf /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64/usr/share/bout++
~/build/BUILD/BOUT++-v4.4.2
+ popd
+ mkdir -p /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64/usr/share/modulefiles/bout++
+ cat
+ '[' mpich = mpich ']'
+ . /etc/profile.d/modules.sh
++ '[' -n /bin/sh ']'
++ '[' sh = sh ']'
++ shell=sh
++ '[' -f /usr/share/Modules/init/sh ']'
++ . /usr/share/Modules/init/sh
+++ unset _mlshdbg
+++ '[' 0 = 1 ']'
+++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD'
+++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD'
+++ unset _mlre _mlIFS
+++ '[' -n x ']'
+++ _mlIFS=' 	
'
+++ IFS=' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
++++ eval 'echo ${LD_LIBRARY_PATH+x}'
+++++ echo x
+++ '[' -n x ']'
++++ eval 'echo ${LD_LIBRARY_PATH}'
+++++ echo /usr/lib64/mpich/lib
+++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' '
+++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH
++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}'
+++++ echo
+++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
++++ eval 'echo ${LD_PRELOAD+x}'
+++++ echo
+++ '[' -n '' ']'
+++ _mlrv=MODULES_RUNENV_LD_PRELOAD
++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}'
+++++ echo
+++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' '
+++ '[' -n '__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']'
+++ _mlre='eval __MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 '
++++ eval '__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\''' 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++++ __MODULES_QUAR_LD_LIBRARY_PATH=/usr/lib64/mpich/lib
+++++ LD_LIBRARY_PATH=
+++++ LD_PRELOAD=
+++++ __MODULES_QUARANTINE_SET=1
+++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++ _mlcode='_module_raw() {
   eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")";
   _mlstatus=$?;
   return $_mlstatus;
};
module() {
   local _mlredir=0;
   if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then
      if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then
         _mlredir=0;
      elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then
         _mlredir=1;
      fi;
   fi;
   case " $@ " in
      *'\'' --no-redirect '\''*) _mlredir=0 ;;
      *'\'' --redirect '\''*) _mlredir=1 ;;
   esac;
   if [ $_mlredir -eq 0 ]; then
      _module_raw "$@";
   else
      _module_raw "$@" 2>&1;
   fi;
};
ml() { module ml "$@"; };
MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD;
unset __MODULES_AUTOINIT_INPROGRESS;
MODULESHOME=/usr/share/Modules; export MODULESHOME;
test 0;'
+++ _mlret=0
+++ '[' -n x ']'
+++ IFS=' 	
'
+++ unset _mlIFS
+++ unset _mlre _mlv _mlrv
+++ '[' 0 -eq 0 ']'
+++ eval '_module_raw() {
   eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")";
   _mlstatus=$?;
   return $_mlstatus;
};
module() {
   local _mlredir=0;
   if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then
      if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then
         _mlredir=0;
      elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then
         _mlredir=1;
      fi;
   fi;
   case " $@ " in
      *'\'' --no-redirect '\''*) _mlredir=0 ;;
      *'\'' --redirect '\''*) _mlredir=1 ;;
   esac;
   if [ $_mlredir -eq 0 ]; then
      _module_raw "$@";
   else
      _module_raw "$@" 2>&1;
   fi;
};
ml() { module ml "$@"; };
MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD;
unset __MODULES_AUTOINIT_INPROGRESS;
MODULESHOME=/usr/share/Modules; export MODULESHOME;
test 0;'
++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl
++++ export MODULES_CMD
++++ unset __MODULES_AUTOINIT_INPROGRESS
++++ MODULESHOME=/usr/share/Modules
++++ export MODULESHOME
++++ test 0
+++ '[' /bin/sh '!=' '' ']'
+++ export -f _module_raw
+++ export -f module
++++ type -t ml
+++ '[' function = function ']'
+++ export -f ml
+++ unset _mlcode _mlret
+++ '[' -n '' ']'
+ module unload mpi/mpich-x86_64
+ local _mlredir=0
+ '[' -n '' ']'
+ case " $@ " in
+ '[' 0 -eq 0 ']'
+ _module_raw unload mpi/mpich-x86_64
++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh unload mpi/mpich-x86_64
+ eval 'unset LD_LIBRARY_PATH;
unset MPI_COMPILER;
MANPATH=/usr/share/man:; export MANPATH;
unset MPI_INCLUDE;
unset MPI_MAN;
unset MPI_PYTHON_SITEARCH;
unset _LMFILES_;
unset LOADEDMODULES;
PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH;
unset MPI_PYTHON3_SITEARCH;
unset MPI_FORTRAN_MOD_DIR;
unset MPI_HOME;
unset __MODULES_LMCONFLICT;
__MODULES_SHARE_MANPATH=:1; export __MODULES_SHARE_MANPATH;
unset MPI_SYSCONFIG;
unset MPI_SUFFIX;
__MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH;
unset MPI_PYTHON2_SITEARCH;
unset MPI_LIB;
PATH=/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH;
unset MPI_BIN;
test 0;'
++ unset LD_LIBRARY_PATH
++ unset MPI_COMPILER
~/build/BUILD/BOUT++-v4.4.2/build_openmpi ~/build/BUILD/BOUT++-v4.4.2
++ MANPATH=/usr/share/man:
++ export MANPATH
++ unset MPI_INCLUDE
++ unset MPI_MAN
++ unset MPI_PYTHON_SITEARCH
++ unset _LMFILES_
++ unset LOADEDMODULES
++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig
++ export PKG_CONFIG_PATH
++ unset MPI_PYTHON3_SITEARCH
++ unset MPI_FORTRAN_MOD_DIR
++ unset MPI_HOME
++ unset __MODULES_LMCONFLICT
++ __MODULES_SHARE_MANPATH=:1
++ export __MODULES_SHARE_MANPATH
++ unset MPI_SYSCONFIG
++ unset MPI_SUFFIX
++ __MODULES_SHARE_PKG_CONFIG_PATH=:1
++ export __MODULES_SHARE_PKG_CONFIG_PATH
++ unset MPI_PYTHON2_SITEARCH
++ unset MPI_LIB
++ PATH=/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin
++ export PATH
++ unset MPI_BIN
++ test 0
+ _mlstatus=0
+ return 0
+ for mpi in mpich openmpi
+ pushd build_openmpi
+ '[' openmpi = mpich ']'
+ . /etc/profile.d/modules.sh
++ '[' -n /bin/sh ']'
++ '[' sh = sh ']'
++ shell=sh
++ '[' -f /usr/share/Modules/init/sh ']'
++ . /usr/share/Modules/init/sh
+++ unset _mlshdbg
+++ '[' 0 = 1 ']'
+++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD'
+++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD'
+++ unset _mlre _mlIFS
+++ '[' -n x ']'
+++ _mlIFS=' 	
'
+++ IFS=' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
++++ eval 'echo ${LD_LIBRARY_PATH+x}'
+++++ echo
+++ '[' -n '' ']'
+++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH
++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}'
+++++ echo
+++ _mlre='LD_LIBRARY_PATH='\'''\'' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
++++ eval 'echo ${LD_PRELOAD+x}'
+++++ echo
+++ '[' -n '' ']'
+++ _mlrv=MODULES_RUNENV_LD_PRELOAD
++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}'
+++++ echo
+++ _mlre='LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' '
+++ '[' -n 'LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']'
+++ _mlre='eval LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 '
++++ eval 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++++ LD_LIBRARY_PATH=
+++++ LD_PRELOAD=
+++++ __MODULES_QUARANTINE_SET=1
+++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++ _mlcode='_module_raw() {
   eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")";
   _mlstatus=$?;
   return $_mlstatus;
};
module() {
   local _mlredir=0;
   if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then
      if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then
         _mlredir=0;
      elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then
         _mlredir=1;
      fi;
   fi;
   case " $@ " in
      *'\'' --no-redirect '\''*) _mlredir=0 ;;
      *'\'' --redirect '\''*) _mlredir=1 ;;
   esac;
   if [ $_mlredir -eq 0 ]; then
      _module_raw "$@";
   else
      _module_raw "$@" 2>&1;
   fi;
};
ml() { module ml "$@"; };
MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD;
unset __MODULES_AUTOINIT_INPROGRESS;
MODULESHOME=/usr/share/Modules; export MODULESHOME;
LOADEDMODULES=; export LOADEDMODULES;
test 0;'
+++ _mlret=0
+++ '[' -n x ']'
+++ IFS=' 	
'
+++ unset _mlIFS
+++ unset _mlre _mlv _mlrv
+++ '[' 0 -eq 0 ']'
+++ eval '_module_raw() {
   eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")";
   _mlstatus=$?;
   return $_mlstatus;
};
module() {
   local _mlredir=0;
   if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then
      if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then
         _mlredir=0;
      elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then
         _mlredir=1;
      fi;
   fi;
   case " $@ " in
      *'\'' --no-redirect '\''*) _mlredir=0 ;;
      *'\'' --redirect '\''*) _mlredir=1 ;;
   esac;
   if [ $_mlredir -eq 0 ]; then
      _module_raw "$@";
   else
      _module_raw "$@" 2>&1;
   fi;
};
ml() { module ml "$@"; };
MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD;
unset __MODULES_AUTOINIT_INPROGRESS;
MODULESHOME=/usr/share/Modules; export MODULESHOME;
LOADEDMODULES=; export LOADEDMODULES;
test 0;'
++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl
++++ export MODULES_CMD
++++ unset __MODULES_AUTOINIT_INPROGRESS
++++ MODULESHOME=/usr/share/Modules
++++ export MODULESHOME
++++ LOADEDMODULES=
++++ export LOADEDMODULES
++++ test 0
+++ '[' /bin/sh '!=' '' ']'
+++ export -f _module_raw
+++ export -f module
++++ type -t ml
+++ '[' function = function ']'
+++ export -f ml
+++ unset _mlcode _mlret
+++ '[' -n '' ']'
+ module load mpi/openmpi-x86_64
+ local _mlredir=0
+ '[' -n '' ']'
+ case " $@ " in
+ '[' 0 -eq 0 ']'
+ _module_raw load mpi/openmpi-x86_64
++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh load mpi/openmpi-x86_64
+ eval 'MPI_COMPILER=openmpi-x86_64; export MPI_COMPILER;
LD_LIBRARY_PATH=/usr/lib64/openmpi/lib; export LD_LIBRARY_PATH;
MANPATH=/usr/share/man/openmpi-x86_64:/usr/share/man:; export MANPATH;
MPI_INCLUDE=/usr/include/openmpi-x86_64; export MPI_INCLUDE;
MPI_MAN=/usr/share/man/openmpi-x86_64; export MPI_MAN;
_LMFILES_=/usr/share/modulefiles/mpi/openmpi-x86_64; export _LMFILES_;
LOADEDMODULES=mpi/openmpi-x86_64; export LOADEDMODULES;
PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH;
MPI_PYTHON3_SITEARCH=/usr/lib64/python3.11/site-packages/openmpi; export MPI_PYTHON3_SITEARCH;
MPI_HOME=/usr/lib64/openmpi; export MPI_HOME;
MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi; export MPI_FORTRAN_MOD_DIR;
__MODULES_LMALTNAME=mpi/openmpi-x86_64\&as\|mpi/default\&as\|mpi/latest; export __MODULES_LMALTNAME;
__MODULES_LMCONFLICT=mpi/openmpi-x86_64\&mpi; export __MODULES_LMCONFLICT;
__MODULES_SHARE_MANPATH=:2; export __MODULES_SHARE_MANPATH;
MPI_SUFFIX=_openmpi; export MPI_SUFFIX;
MPI_SYSCONFIG=/etc/openmpi-x86_64; export MPI_SYSCONFIG;
__MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH;
MPI_LIB=/usr/lib64/openmpi/lib; export MPI_LIB;
PATH=/usr/lib64/openmpi/bin:/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH;
MPI_BIN=/usr/lib64/openmpi/bin; export MPI_BIN;
test 0;'
++ MPI_COMPILER=openmpi-x86_64
++ export MPI_COMPILER
++ LD_LIBRARY_PATH=/usr/lib64/openmpi/lib
++ export LD_LIBRARY_PATH
++ MANPATH=/usr/share/man/openmpi-x86_64:/usr/share/man:
++ export MANPATH
++ MPI_INCLUDE=/usr/include/openmpi-x86_64
++ export MPI_INCLUDE
++ MPI_MAN=/usr/share/man/openmpi-x86_64
++ export MPI_MAN
++ _LMFILES_=/usr/share/modulefiles/mpi/openmpi-x86_64
++ export _LMFILES_
++ LOADEDMODULES=mpi/openmpi-x86_64
++ export LOADEDMODULES
++ PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig
++ export PKG_CONFIG_PATH
++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.11/site-packages/openmpi
++ export MPI_PYTHON3_SITEARCH
++ MPI_HOME=/usr/lib64/openmpi
++ export MPI_HOME
++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi
++ export MPI_FORTRAN_MOD_DIR
++ __MODULES_LMALTNAME='mpi/openmpi-x86_64&as|mpi/default&as|mpi/latest'
++ export __MODULES_LMALTNAME
++ __MODULES_LMCONFLICT='mpi/openmpi-x86_64&mpi'
++ export __MODULES_LMCONFLICT
++ __MODULES_SHARE_MANPATH=:2
++ export __MODULES_SHARE_MANPATH
++ MPI_SUFFIX=_openmpi
++ export MPI_SUFFIX
++ MPI_SYSCONFIG=/etc/openmpi-x86_64
++ export MPI_SYSCONFIG
++ __MODULES_SHARE_PKG_CONFIG_PATH=:1
++ export __MODULES_SHARE_PKG_CONFIG_PATH
++ MPI_LIB=/usr/lib64/openmpi/lib
++ export MPI_LIB
++ PATH=/usr/lib64/openmpi/bin:/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin
++ export PATH
++ MPI_BIN=/usr/lib64/openmpi/bin
++ export MPI_BIN
++ test 0
+ _mlstatus=0
+ return 0
+ export OMPI_MCA_rmaps_base_oversubscribe=1
+ OMPI_MCA_rmaps_base_oversubscribe=1
+ make install DESTDIR=/builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64
# Pre-install commands follow.
# Normal commands follow.
/usr/bin/mkdir -p /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64/usr/include/openmpi-x86_64/bout++//{,pvode,bout/sys,bout/invert}
/usr/bin/mkdir -p /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64/{/usr/lib64/openmpi/lib,/usr/lib64/openmpi/bin,/usr/share/bout++/idllib}
/usr/bin/install -c -m 644 include/*.hxx /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64/usr/include/openmpi-x86_64/bout++/
/usr/bin/install -c -m 644 include/pvode/*.h /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64/usr/include/openmpi-x86_64/bout++//pvode/
/usr/bin/install -c -m 644 include/bout/*.hxx /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64/usr/include/openmpi-x86_64/bout++//bout/
/usr/bin/install -c -m 644 include/bout/sys/*.hxx /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64/usr/include/openmpi-x86_64/bout++//bout/sys/
/usr/bin/install -c -m 644 include/bout/invert/*.hxx /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64/usr/include/openmpi-x86_64/bout++//bout/invert/
/usr/bin/install -c lib/libbout++.so.4.4.0 /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64/usr/lib64/openmpi/lib
/usr/bin/install -c lib/libpvode.so.* /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64/usr/lib64/openmpi/lib
/usr/bin/install -c lib/libpvpre.so.* /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64/usr/lib64/openmpi/lib
rm -f /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64/usr/lib64/openmpi/lib/lib{bout++,pvode,pvpre}.so
ln -s libbout++.so.4.4.0 /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64/usr/lib64/openmpi/lib/libbout++.so
ln -s libpvode.so.1.0.0 /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64/usr/lib64/openmpi/lib/libpvode.so
ln -s libpvpre.so.1.0.0 /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64/usr/lib64/openmpi/lib/libpvpre.so
/usr/bin/install -c  bin/bout-config /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64/usr/lib64/openmpi/bin
/usr/bin/install -c  bin/bout-log-color /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64/usr/lib64/openmpi/bin
/usr/bin/install -c -m 644  tools/idllib/*.pro /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64/usr/share/bout++/idllib/
/usr/bin/install -c -m 644  tools/idllib/README /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64/usr/share/bout++/idllib/
/usr/bin/install -c -m 644  make.config /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64/usr/include/openmpi-x86_64/bout++/
for mo in de/LC_MESSAGES/libbout.mo es/LC_MESSAGES/libbout.mo fr/LC_MESSAGES/libbout.mo zh_CN/LC_MESSAGES/libbout.mo zh_TW/LC_MESSAGES/libbout.mo; do /usr/bin/mkdir -p /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64/usr/share/locale/`dirname $mo`; /usr/bin/install -c -m 644 locale/$mo /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64/usr/share/locale/$mo; done
# Post-install commands follow.
sed -i "s|^BOUT_INCLUDE_PATH=.*|BOUT_INCLUDE_PATH=/usr/include/openmpi-x86_64/bout++|" /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64/usr/lib64/openmpi/bin/bout-config 
sed -i "s|^BOUT_LIB_PATH=.*|BOUT_LIB_PATH=/usr/lib64/openmpi/lib|" /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64/usr/lib64/openmpi/bin/bout-config
sed -i "s|^BOUT_CONFIG_FILE=.*|BOUT_CONFIG_FILE=/usr/share/bout++/make.config|" /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64/usr/lib64/openmpi/bin/bout-config
sed -i "s|^idlpath=.*|idlpath=/usr/share/bout++/idllib/|" /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64/usr/lib64/openmpi/bin/bout-config
sed -i "s|^pythonpath=.*|pythonpath=/usr/share/bout++/pylib/|" /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64/usr/lib64/openmpi/bin/bout-config
sed -i "s|^BOUT_INCLUDE_PATH=.*|BOUT_INCLUDE_PATH=/usr/include/openmpi-x86_64/bout++|" /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64/usr/include/openmpi-x86_64/bout++//make.config
sed -i "s|^BOUT_LIB_PATH=.*|BOUT_LIB_PATH=/usr/lib64/openmpi/lib|" /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64/usr/include/openmpi-x86_64/bout++//make.config
sed -i "s|^BOUT_CONFIG_FILE=.*|BOUT_CONFIG_FILE=/usr/include/openmpi-x86_64/bout++/make.config|" /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64/usr/include/openmpi-x86_64/bout++//make.config
sed -i '26 i RELEASED                 = yes' /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64/usr/include/openmpi-x86_64/bout++//make.config
+ sed -i '27 i RELEASED                 = 4.4.2-6.fc38' /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64//usr/include/openmpi-x86_64/bout++/make.config
+ rm -rf /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64/usr/share/bout++
+ popd
~/build/BUILD/BOUT++-v4.4.2
+ mkdir -p /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64/usr/share/modulefiles/bout++
+ cat
+ '[' openmpi = mpich ']'
+ . /etc/profile.d/modules.sh
++ '[' -n /bin/sh ']'
++ '[' sh = sh ']'
++ shell=sh
++ '[' -f /usr/share/Modules/init/sh ']'
++ . /usr/share/Modules/init/sh
+++ unset _mlshdbg
+++ '[' 0 = 1 ']'
+++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD'
+++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD'
+++ unset _mlre _mlIFS
+++ '[' -n x ']'
+++ _mlIFS=' 	
'
+++ IFS=' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
++++ eval 'echo ${LD_LIBRARY_PATH+x}'
+++++ echo x
+++ '[' -n x ']'
++++ eval 'echo ${LD_LIBRARY_PATH}'
+++++ echo /usr/lib64/openmpi/lib
+++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' '
+++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH
++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}'
+++++ echo
+++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
++++ eval 'echo ${LD_PRELOAD+x}'
+++++ echo
+++ '[' -n '' ']'
+++ _mlrv=MODULES_RUNENV_LD_PRELOAD
++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}'
+++++ echo
+++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' '
+++ '[' -n '__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']'
+++ _mlre='eval __MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 '
++++ eval '__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\''' 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++++ __MODULES_QUAR_LD_LIBRARY_PATH=/usr/lib64/openmpi/lib
+++++ LD_LIBRARY_PATH=
+++++ LD_PRELOAD=
+++++ __MODULES_QUARANTINE_SET=1
+++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++ _mlcode='_module_raw() {
   eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")";
   _mlstatus=$?;
   return $_mlstatus;
};
module() {
   local _mlredir=0;
   if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then
      if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then
         _mlredir=0;
      elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then
         _mlredir=1;
      fi;
   fi;
   case " $@ " in
      *'\'' --no-redirect '\''*) _mlredir=0 ;;
      *'\'' --redirect '\''*) _mlredir=1 ;;
   esac;
   if [ $_mlredir -eq 0 ]; then
      _module_raw "$@";
   else
      _module_raw "$@" 2>&1;
   fi;
};
ml() { module ml "$@"; };
MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD;
unset __MODULES_AUTOINIT_INPROGRESS;
MODULESHOME=/usr/share/Modules; export MODULESHOME;
test 0;'
+++ _mlret=0
+++ '[' -n x ']'
+++ IFS=' 	
'
+++ unset _mlIFS
+++ unset _mlre _mlv _mlrv
+++ '[' 0 -eq 0 ']'
+++ eval '_module_raw() {
   eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")";
   _mlstatus=$?;
   return $_mlstatus;
};
module() {
   local _mlredir=0;
   if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then
      if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then
         _mlredir=0;
      elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then
         _mlredir=1;
      fi;
   fi;
   case " $@ " in
      *'\'' --no-redirect '\''*) _mlredir=0 ;;
      *'\'' --redirect '\''*) _mlredir=1 ;;
   esac;
   if [ $_mlredir -eq 0 ]; then
      _module_raw "$@";
   else
      _module_raw "$@" 2>&1;
   fi;
};
ml() { module ml "$@"; };
MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD;
unset __MODULES_AUTOINIT_INPROGRESS;
MODULESHOME=/usr/share/Modules; export MODULESHOME;
test 0;'
++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl
++++ export MODULES_CMD
++++ unset __MODULES_AUTOINIT_INPROGRESS
++++ MODULESHOME=/usr/share/Modules
++++ export MODULESHOME
++++ test 0
+++ '[' /bin/sh '!=' '' ']'
+++ export -f _module_raw
+++ export -f module
++++ type -t ml
+++ '[' function = function ']'
+++ export -f ml
+++ unset _mlcode _mlret
+++ '[' -n '' ']'
+ module unload mpi/openmpi-x86_64
+ local _mlredir=0
+ '[' -n '' ']'
+ case " $@ " in
+ '[' 0 -eq 0 ']'
+ _module_raw unload mpi/openmpi-x86_64
++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh unload mpi/openmpi-x86_64
+ eval 'unset MPI_COMPILER;
unset LD_LIBRARY_PATH;
MANPATH=/usr/share/man:; export MANPATH;
unset MPI_INCLUDE;
unset MPI_MAN;
unset _LMFILES_;
unset LOADEDMODULES;
PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH;
unset MPI_PYTHON3_SITEARCH;
unset MPI_HOME;
unset MPI_FORTRAN_MOD_DIR;
unset __MODULES_LMALTNAME;
unset __MODULES_LMCONFLICT;
__MODULES_SHARE_MANPATH=:1; export __MODULES_SHARE_MANPATH;
unset MPI_SUFFIX;
unset MPI_SYSCONFIG;
__MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH;
unset MPI_LIB;
PATH=/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH;
unset MPI_BIN;
test 0;'
++ unset MPI_COMPILER
++ unset LD_LIBRARY_PATH
++ MANPATH=/usr/share/man:
++ export MANPATH
++ unset MPI_INCLUDE
++ unset MPI_MAN
~/build/BUILD/BOUT++-v4.4.2/tools/pylib ~/build/BUILD/BOUT++-v4.4.2
++ unset _LMFILES_
++ unset LOADEDMODULES
++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig
++ export PKG_CONFIG_PATH
++ unset MPI_PYTHON3_SITEARCH
++ unset MPI_HOME
++ unset MPI_FORTRAN_MOD_DIR
++ unset __MODULES_LMALTNAME
++ unset __MODULES_LMCONFLICT
++ __MODULES_SHARE_MANPATH=:1
++ export __MODULES_SHARE_MANPATH
++ unset MPI_SUFFIX
++ unset MPI_SYSCONFIG
++ __MODULES_SHARE_PKG_CONFIG_PATH=:1
++ export __MODULES_SHARE_PKG_CONFIG_PATH
++ unset MPI_LIB
++ PATH=/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin
++ export PATH
++ unset MPI_BIN
++ test 0
+ _mlstatus=0
+ return 0
+ pushd tools/pylib
+ for d in bout_runners zoidberg
+ mkdir -p /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64//usr/lib/python3.11/site-packages/bout_runners
+ cp bout_runners/__init__.py bout_runners/bout_runners.py /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64//usr/lib/python3.11/site-packages/bout_runners/
+ for d in bout_runners zoidberg
+ mkdir -p /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64//usr/lib/python3.11/site-packages/zoidberg
+ cp zoidberg/__init__.py zoidberg/boundary.py zoidberg/field.py zoidberg/fieldtracer.py zoidberg/grid.py zoidberg/plot.py zoidberg/poloidal_grid.py zoidberg/progress.py zoidberg/rzline.py zoidberg/test_field.py zoidberg/test_fieldtracer.py zoidberg/test_grid.py zoidberg/test_poloidal_grid.py zoidberg/test_rzline.py zoidberg/test_zoidberg.py zoidberg/zoidberg.py /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64//usr/lib/python3.11/site-packages/zoidberg/
~/build/BUILD/BOUT++-v4.4.2
+ popd
++ head -n1
++ ls build_mpich/manual build_openmpi/manual -d
+ mandir=build_mpich/manual
+ mkdir -p /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64//usr/share/doc/bout++/
+ rm -rf build_mpich/manual/html/.buildinfo
+ rm -rf build_mpich/manual/html/.doctrees
+ rm -rf build_mpich/manual/html/_sources
+ cp -r build_mpich/manual/html /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64//usr/share/doc/bout++/
+ for mpi in mpich openmpi
+ mkdir -p /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64//usr/lib64/python3.11/site-packages/mpich/
+ install build_mpich/tools/pylib/boutcore.cpython-311-x86_64-linux-gnu.so /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64//usr/lib64/python3.11/site-packages/mpich/
+ for mpi in mpich openmpi
+ mkdir -p /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64//usr/lib64/python3.11/site-packages/openmpi/
+ install build_openmpi/tools/pylib/boutcore.cpython-311-x86_64-linux-gnu.so /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64//usr/lib64/python3.11/site-packages/openmpi/
+ /usr/lib/rpm/find-lang.sh /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64 libbout
+ /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 4.4.2-6.fc38 --unique-debug-suffix -4.4.2-6.fc38.x86_64 --unique-debug-src-base bout++-4.4.2-6.fc38.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/BOUT++-v4.4.2
extracting debug info from /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64/usr/lib64/mpich/lib/libpvode.so.1.0.0
extracting debug info from /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64/usr/lib64/mpich/lib/libbout++.so.4.4.0
extracting debug info from /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64/usr/lib64/mpich/lib/libpvpre.so.1.0.0
extracting debug info from /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64/usr/lib64/openmpi/lib/libbout++.so.4.4.0
extracting debug info from /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64/usr/lib64/openmpi/lib/libpvode.so.1.0.0
extracting debug info from /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64/usr/lib64/openmpi/lib/libpvpre.so.1.0.0
extracting debug info from /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64/usr/lib64/python3.11/site-packages/mpich/boutcore.cpython-311-x86_64-linux-gnu.so
extracting debug info from /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64/usr/lib64/python3.11/site-packages/openmpi/boutcore.cpython-311-x86_64-linux-gnu.so
original debug info size: 165816kB, size after compression: 127988kB
/usr/bin/sepdebugcrcfix: Updated 8 CRC32s, 0 CRC32s did match.
17769 blocks
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/check-rpaths
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
*** WARNING: ./usr/lib/python3.11/site-packages/bout_runners/bout_runners.py is executable but has no shebang, removing executable bit
mangling shebang in /usr/lib64/openmpi/bin/bout-config from /bin/sh to #!/usr/bin/sh
mangling shebang in /usr/lib64/openmpi/bin/bout-log-color from /bin/sh to #!/usr/bin/sh
mangling shebang in /usr/lib64/mpich/bin/bout-config from /bin/sh to #!/usr/bin/sh
mangling shebang in /usr/lib64/mpich/bin/bout-log-color from /bin/sh to #!/usr/bin/sh
+ /usr/lib/rpm/brp-remove-la-files
+ env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2
Bytecompiling .py files below /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64/usr/lib/debug/usr/lib64/python3.11 using python3.11
Bytecompiling .py files below /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64/usr/lib/python3.11 using python3.11
Bytecompiling .py files below /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64/usr/lib64/python3.11 using python3.11
+ /usr/lib/rpm/redhat/brp-python-hardlink
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.8ApOGE
+ umask 022
+ cd /builddir/build/BUILD
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer'
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer'
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules'
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes'
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd BOUT++-v4.4.2
+ fail=1
+ for mpi in mpich openmpi
+ '[' mpich = mpich ']'
+ . /etc/profile.d/modules.sh
++ '[' -n /bin/sh ']'
++ '[' sh = sh ']'
++ shell=sh
++ '[' -f /usr/share/Modules/init/sh ']'
++ . /usr/share/Modules/init/sh
+++ unset _mlshdbg
+++ '[' 0 = 1 ']'
+++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD'
+++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD'
+++ unset _mlre _mlIFS
+++ '[' -n x ']'
+++ _mlIFS=' 	
'
+++ IFS=' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
++++ eval 'echo ${LD_LIBRARY_PATH+x}'
+++++ echo
+++ '[' -n '' ']'
+++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH
++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}'
+++++ echo
+++ _mlre='LD_LIBRARY_PATH='\'''\'' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
++++ eval 'echo ${LD_PRELOAD+x}'
+++++ echo
+++ '[' -n '' ']'
+++ _mlrv=MODULES_RUNENV_LD_PRELOAD
++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}'
+++++ echo
+++ _mlre='LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' '
+++ '[' -n 'LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']'
+++ _mlre='eval LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 '
++++ eval 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++++ LD_LIBRARY_PATH=
+++++ LD_PRELOAD=
+++++ __MODULES_QUARANTINE_SET=1
+++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++ _mlcode='_module_raw() {
   eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")";
   _mlstatus=$?;
   return $_mlstatus;
};
module() {
   local _mlredir=0;
   if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then
      if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then
         _mlredir=0;
      elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then
         _mlredir=1;
      fi;
   fi;
   case " $@ " in
      *'\'' --no-redirect '\''*) _mlredir=0 ;;
      *'\'' --redirect '\''*) _mlredir=1 ;;
   esac;
   if [ $_mlredir -eq 0 ]; then
      _module_raw "$@";
   else
      _module_raw "$@" 2>&1;
   fi;
};
ml() { module ml "$@"; };
MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD;
unset __MODULES_AUTOINIT_INPROGRESS;
MODULESHOME=/usr/share/Modules; export MODULESHOME;
test 0;'
+++ _mlret=0
+++ '[' -n x ']'
+++ IFS=' 	
'
+++ unset _mlIFS
+++ unset _mlre _mlv _mlrv
+++ '[' 0 -eq 0 ']'
+++ eval '_module_raw() {
   eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")";
   _mlstatus=$?;
   return $_mlstatus;
};
module() {
   local _mlredir=0;
   if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then
      if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then
         _mlredir=0;
      elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then
         _mlredir=1;
      fi;
   fi;
   case " $@ " in
      *'\'' --no-redirect '\''*) _mlredir=0 ;;
      *'\'' --redirect '\''*) _mlredir=1 ;;
   esac;
   if [ $_mlredir -eq 0 ]; then
      _module_raw "$@";
   else
      _module_raw "$@" 2>&1;
   fi;
};
ml() { module ml "$@"; };
MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD;
unset __MODULES_AUTOINIT_INPROGRESS;
MODULESHOME=/usr/share/Modules; export MODULESHOME;
test 0;'
++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl
++++ export MODULES_CMD
++++ unset __MODULES_AUTOINIT_INPROGRESS
++++ MODULESHOME=/usr/share/Modules
++++ export MODULESHOME
++++ test 0
+++ '[' /bin/sh '!=' '' ']'
+++ export -f _module_raw
+++ export -f module
++++ type -t ml
+++ '[' function = function ']'
+++ export -f ml
+++ unset _mlcode _mlret
+++ '[' -n '' ']'
+ module load mpi/mpich-x86_64
+ local _mlredir=0
+ '[' -n '' ']'
+ case " $@ " in
+ '[' 0 -eq 0 ']'
+ _module_raw load mpi/mpich-x86_64
++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh load mpi/mpich-x86_64
+ eval 'LD_LIBRARY_PATH=/usr/lib64/mpich/lib; export LD_LIBRARY_PATH;
MPI_COMPILER=mpich-x86_64; export MPI_COMPILER;
MANPATH=/usr/share/man/mpich-x86_64:/usr/share/man:; export MANPATH;
MPI_INCLUDE=/usr/include/mpich-x86_64; export MPI_INCLUDE;
MPI_MAN=/usr/share/man/mpich-x86_64; export MPI_MAN;
MPI_PYTHON_SITEARCH=%\{python2_sitearch\}/mpich; export MPI_PYTHON_SITEARCH;
_LMFILES_=/usr/share/modulefiles/mpi/mpich-x86_64; export _LMFILES_;
LOADEDMODULES=mpi/mpich-x86_64; export LOADEDMODULES;
PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH;
MPI_PYTHON3_SITEARCH=/usr/lib64/python3.11/site-packages/mpich; export MPI_PYTHON3_SITEARCH;
MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich; export MPI_FORTRAN_MOD_DIR;
MPI_HOME=/usr/lib64/mpich; export MPI_HOME;
__MODULES_LMCONFLICT=mpi/mpich-x86_64\&mpi; export __MODULES_LMCONFLICT;
__MODULES_SHARE_MANPATH=:2; export __MODULES_SHARE_MANPATH;
MPI_SYSCONFIG=/etc/mpich-x86_64; export MPI_SYSCONFIG;
MPI_SUFFIX=_mpich; export MPI_SUFFIX;
__MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH;
MPI_PYTHON2_SITEARCH=%\{python2_sitearch\}/mpich; export MPI_PYTHON2_SITEARCH;
MPI_LIB=/usr/lib64/mpich/lib; export MPI_LIB;
PATH=/usr/lib64/mpich/bin:/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH;
MPI_BIN=/usr/lib64/mpich/bin; export MPI_BIN;
~/build/BUILD/BOUT++-v4.4.2/build_mpich ~/build/BUILD/BOUT++-v4.4.2
test 0;'
++ LD_LIBRARY_PATH=/usr/lib64/mpich/lib
++ export LD_LIBRARY_PATH
++ MPI_COMPILER=mpich-x86_64
++ export MPI_COMPILER
++ MANPATH=/usr/share/man/mpich-x86_64:/usr/share/man:
++ export MANPATH
++ MPI_INCLUDE=/usr/include/mpich-x86_64
++ export MPI_INCLUDE
++ MPI_MAN=/usr/share/man/mpich-x86_64
++ export MPI_MAN
++ MPI_PYTHON_SITEARCH='%{python2_sitearch}/mpich'
++ export MPI_PYTHON_SITEARCH
++ _LMFILES_=/usr/share/modulefiles/mpi/mpich-x86_64
++ export _LMFILES_
++ LOADEDMODULES=mpi/mpich-x86_64
++ export LOADEDMODULES
++ PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig
++ export PKG_CONFIG_PATH
++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.11/site-packages/mpich
++ export MPI_PYTHON3_SITEARCH
++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich
++ export MPI_FORTRAN_MOD_DIR
++ MPI_HOME=/usr/lib64/mpich
++ export MPI_HOME
++ __MODULES_LMCONFLICT='mpi/mpich-x86_64&mpi'
++ export __MODULES_LMCONFLICT
++ __MODULES_SHARE_MANPATH=:2
++ export __MODULES_SHARE_MANPATH
++ MPI_SYSCONFIG=/etc/mpich-x86_64
++ export MPI_SYSCONFIG
++ MPI_SUFFIX=_mpich
++ export MPI_SUFFIX
++ __MODULES_SHARE_PKG_CONFIG_PATH=:1
++ export __MODULES_SHARE_PKG_CONFIG_PATH
++ MPI_PYTHON2_SITEARCH='%{python2_sitearch}/mpich'
++ export MPI_PYTHON2_SITEARCH
++ MPI_LIB=/usr/lib64/mpich/lib
++ export MPI_LIB
++ PATH=/usr/lib64/mpich/bin:/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin
++ export PATH
++ MPI_BIN=/usr/lib64/mpich/bin
++ export MPI_BIN
++ test 0
+ _mlstatus=0
+ return 0
+ export 'CFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer'
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer'
+ pushd build_mpich
+ export OMPI_MCA_rmaps_base_oversubscribe=yes
+ OMPI_MCA_rmaps_base_oversubscribe=yes
+ export HDF5_USE_FILE_LOCKING=FALSE
+ HDF5_USE_FILE_LOCKING=FALSE
+ export BOUT_TEST_TIMEOUT=15m
+ BOUT_TEST_TIMEOUT=15m
+ sed 's/ 3s / 30s /' tests/integrated/test-coordinates-initialization/runtest
#!/bin/bash
make || exit
test -z $MPIRUN  && MPIRUN='mpirun -np'
# Kill the test after 3 seconds, if it hasn't already exited
OMP_NUM_THREADS=1 $MPIRUN 3 timeout 30s ./test-coordinates-initialization
e=$?
if test $e -ne 0
then
    echo "The test failed. That can be caused by a timeout."
    echo "If this test is run on high load, it may fail occasionally."
    echo "The load is:"
    uptime
fi
exit $e
+ make -j2 build-check
make --no-print-directory -C tests/integrated
make --no-print-directory -C tests/MMS
  Compiling  wave.cxx
  Compiling  test_yupdown.cxx
In file included from ../../..//include/field.hxx:41,
                 from ../../..//include/field3d.hxx:30,
                 from ../../..//include/difops.hxx:39,
                 from ../../..//include/bout.hxx:41,
                 from ../../..//include/bout/physicsmodel.hxx:40,
                 from wave.cxx:1:
../../..//include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../..//include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../..//include/dataformat.hxx:40,
                 from ../../..//include/datafile.hxx:20,
                 from ../../..//include/bout.hxx:40:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
In file included from ../../../include/field.hxx:41,
                 from ../../../include/field3d.hxx:30,
                 from ../../../include/difops.hxx:39,
                 from ../../../include/bout.hxx:41,
                 from test_yupdown.cxx:1:
../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../../include/dataformat.hxx:40,
                 from ../../../include/datafile.hxx:20,
                 from ../../../include/bout.hxx:40:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Linking test_yupdown
  Compiling  testVec.cxx
In file included from ../../../include/field.hxx:41,
                 from ../../../include/field3d.hxx:30,
                 from ../../../include/difops.hxx:39,
                 from ../../../include/bout.hxx:41,
                 from ../../../include/bout/physicsmodel.hxx:40,
                 from testVec.cxx:2:
../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../../include/dataformat.hxx:40,
                 from ../../../include/datafile.hxx:20,
                 from ../../../include/bout.hxx:40:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Linking wave
  Linking testVec
  Compiling  wave.cxx
  Compiling  test-twistshift.cxx
In file included from ../../..//include/field.hxx:41,
                 from ../../..//include/field3d.hxx:30,
                 from ../../..//include/difops.hxx:39,
                 from ../../..//include/bout.hxx:41,
                 from ../../..//include/bout/physicsmodel.hxx:40,
                 from wave.cxx:1:
../../..//include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../..//include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../..//include/dataformat.hxx:40,
                 from ../../..//include/datafile.hxx:20,
                 from ../../..//include/bout.hxx:40:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
In file included from ../../../include/field.hxx:41,
                 from ../../../include/field3d.hxx:30,
                 from ../../../include/difops.hxx:39,
                 from ../../../include/bout.hxx:41,
                 from test-twistshift.cxx:1:
../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../../include/dataformat.hxx:40,
                 from ../../../include/datafile.hxx:20,
                 from ../../../include/bout.hxx:40:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Linking wave
  Linking test-twistshift
  Compiling  fci_mms.cxx
  Compiling  test-twistshift.cxx
In file included from ../../../../include/field.hxx:41,
                 from ../../../../include/field3d.hxx:30,
                 from ../../../../include/difops.hxx:39,
                 from ../../../../include/bout.hxx:41,
                 from fci_mms.cxx:1:
../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../../../include/dataformat.hxx:40,
                 from ../../../../include/datafile.hxx:20,
                 from ../../../../include/bout.hxx:40:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
In file included from ../../../include/field.hxx:41,
                 from ../../../include/field3d.hxx:30,
                 from ../../../include/difops.hxx:39,
                 from ../../../include/bout.hxx:41,
                 from test-twistshift.cxx:1:
../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../../include/dataformat.hxx:40,
                 from ../../../include/datafile.hxx:20,
                 from ../../../include/bout.hxx:40:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Linking fci_mms
  Linking test-twistshift
  Compiling  diffusion.cxx
  Compiling  fuu.cxx
In file included from ../../..//include/field.hxx:41,
                 from ../../..//include/field3d.hxx:30,
                 from ../../..//include/difops.hxx:39,
                 from ../../..//include/bout.hxx:41,
                 from diffusion.cxx:1:
../../..//include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../..//include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../..//include/dataformat.hxx:40,
                 from ../../..//include/datafile.hxx:20,
                 from ../../..//include/bout.hxx:40:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
In file included from ../../../../include/field.hxx:41,
                 from ../../../../include/field3d.hxx:30,
                 from ../../../../include/difops.hxx:39,
                 from ../../../../include/bout.hxx:41,
                 from fuu.hxx:4,
                 from fuu.cxx:1:
../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../../../include/dataformat.hxx:40,
                 from ../../../../include/datafile.hxx:20,
                 from ../../../../include/bout.hxx:40:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Adding fuu.o to /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-subdir/fuu.a
  Compiling  bar.cxx
In file included from ../../../../include/field.hxx:41,
                 from ../../../../include/field3d.hxx:30,
                 from ../../../../include/difops.hxx:39,
                 from ../../../../include/bout.hxx:41,
                 from bar.cxx:1:
../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../../../include/dataformat.hxx:40,
                 from ../../../../include/datafile.hxx:20,
                 from ../../../../include/bout.hxx:40:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Adding bar.o to /builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/integrated/test-subdir/bar.a
  Compiling  subdirs.cxx
  Linking cyto
In file included from ../../../include/field.hxx:41,
                 from ../../../include/field3d.hxx:30,
                 from ../../../include/difops.hxx:39,
                 from ../../../include/bout.hxx:41,
                 from ../../../include/bout/physicsmodel.hxx:40,
                 from subdirs.cxx:1:
../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../../include/dataformat.hxx:40,
                 from ../../../include/datafile.hxx:20,
                 from ../../../include/bout.hxx:40:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  test_extras.cxx
  Linking subdirs
  Compiling  test_stopCheck.cxx
In file included from ../../include/bout/scorepwrapper.hxx:5,
                 from ../../include/bout/deriv_store.hxx:37,
                 from ../../include/bout/mesh.hxx:49,
                 from test_extras.hxx:12,
                 from test_extras.cxx:2:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55,
                 from test_extras.cxx:1:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
In file included from ../../../include/field.hxx:41,
                 from ../../../include/field3d.hxx:30,
                 from ../../../include/difops.hxx:39,
                 from ../../../include/bout.hxx:41,
                 from test_stopCheck.cxx:6:
../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../../include/dataformat.hxx:40,
                 from ../../../include/datafile.hxx:20,
                 from ../../../include/bout.hxx:40:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  sys/test_variant.cxx
  Linking test_stopCheck
  Compiling  test_stopCheck.cxx
In file included from ../../include/utils.hxx:38,
                 from ../../include/bout/sys/variant.hxx:26,
                 from sys/test_variant.cxx:3:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55,
                 from sys/test_variant.cxx:1:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
In file included from ../../../include/field.hxx:41,
                 from ../../../include/field3d.hxx:30,
                 from ../../../include/difops.hxx:39,
                 from ../../../include/bout.hxx:41,
                 from test_stopCheck.cxx:6:
../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../../include/dataformat.hxx:40,
                 from ../../../include/datafile.hxx:20,
                 from ../../../include/bout.hxx:40:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  sys/test_utils.cxx
In file included from ../../include/utils.hxx:38,
                 from sys/test_utils.cxx:2:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55,
                 from sys/test_utils.cxx:1:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Linking test_stopCheck
  Compiling  test_solver.cxx
In file included from ../../../include/field.hxx:41,
                 from ../../../include/field3d.hxx:30,
                 from ../../../include/difops.hxx:39,
                 from ../../../include/bout.hxx:41,
                 from ../../../include/bout/physicsmodel.hxx:40,
                 from test_solver.cxx:2:
../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../../include/dataformat.hxx:40,
                 from ../../../include/datafile.hxx:20,
                 from ../../../include/bout.hxx:40:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Linking test_solver
  Compiling  test_snb.cxx
  Compiling  sys/test_type_name.cxx
In file included from ../../../include/field.hxx:41,
                 from ../../../include/field3d.hxx:30,
                 from ../../../include/invert_parderiv.hxx:34,
                 from ../../../include/bout/snb.hxx:1,
                 from test_snb.cxx:1:
../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../../include/field.hxx:34:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
In file included from ../../include/field.hxx:41,
                 from ../../include/field2d.hxx:34,
                 from sys/test_type_name.cxx:3:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55,
                 from sys/test_type_name.cxx:1:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  sys/test_timer.cxx
In file included from ../../include/bout/sys/timer.hxx:11,
                 from sys/test_timer.cxx:4:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55,
                 from sys/test_timer.cxx:1:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Linking test_snb
  Compiling  sys/test_range.cxx
  Compiling  test_smooth.cxx
In file included from ../../../include/field.hxx:41,
                 from ../../../include/field3d.hxx:30,
                 from ../../../include/difops.hxx:39,
                 from ../../../include/bout.hxx:41,
                 from test_smooth.cxx:6:
../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../../include/dataformat.hxx:40,
                 from ../../../include/datafile.hxx:20,
                 from ../../../include/bout.hxx:40:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Linking test_smooth
  Compiling  sys/test_output.cxx
  Compiling  test_restarting.cxx
In file included from ../../../include/field.hxx:41,
                 from ../../../include/field3d.hxx:30,
                 from ../../../include/difops.hxx:39,
                 from ../../../include/bout.hxx:41,
                 from ../../../include/bout/physicsmodel.hxx:40,
                 from test_restarting.cxx:1:
../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../../include/dataformat.hxx:40,
                 from ../../../include/datafile.hxx:20,
                 from ../../../include/bout.hxx:40:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Linking test_restarting
  Compiling  test-restart-io.cxx
In file included from ../../../include/field.hxx:41,
                 from ../../../include/field3d.hxx:30,
                 from ../../../include/difops.hxx:39,
                 from ../../../include/bout.hxx:41,
                 from ../../../include/bout/physicsmodel.hxx:40,
                 from test-restart-io.cxx:1:
../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../../include/dataformat.hxx:40,
                 from ../../../include/datafile.hxx:20,
                 from ../../../include/bout.hxx:40:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  sys/test_optionsreader.cxx
In file included from ../../include/bout/scorepwrapper.hxx:5,
                 from ../../include/bout/deriv_store.hxx:37,
                 from ../../include/bout/mesh.hxx:49,
                 from ./test_extras.hxx:12,
                 from sys/test_optionsreader.cxx:2:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55,
                 from sys/test_optionsreader.cxx:1:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Linking test-restart-io
  Compiling  test-restart-io.cxx
In file included from ../../../include/field.hxx:41,
                 from ../../../include/field3d.hxx:30,
                 from ../../../include/difops.hxx:39,
                 from ../../../include/bout.hxx:41,
                 from ../../../include/bout/physicsmodel.hxx:40,
                 from test-restart-io.cxx:1:
../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../../include/dataformat.hxx:40,
                 from ../../../include/datafile.hxx:20,
                 from ../../../include/bout.hxx:40:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Linking test-restart-io
  Compiling  test_region_iterator.cxx
  Compiling  sys/test_options_netcdf.cxx
In file included from ../../../include/field.hxx:41,
                 from ../../../include/field3d.hxx:30,
                 from ../../../include/difops.hxx:39,
                 from ../../../include/bout.hxx:41,
                 from test_region_iterator.cxx:1:
../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../../include/dataformat.hxx:40,
                 from ../../../include/datafile.hxx:20,
                 from ../../../include/bout.hxx:40:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
In file included from ../../include/bout/scorepwrapper.hxx:5,
                 from ../../include/bout/deriv_store.hxx:37,
                 from ../../include/bout/mesh.hxx:49,
                 from sys/test_options_netcdf.cxx:7:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55,
                 from sys/test_options_netcdf.cxx:5:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Linking test_region_iterator
  Compiling  test_naulin_laplace.cxx
In file included from ../../../include/field.hxx:41,
                 from ../../../include/field3d.hxx:30,
                 from ../../../include/difops.hxx:39,
                 from ../../../include/bout.hxx:41,
                 from test_naulin_laplace.cxx:26:
../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../../include/dataformat.hxx:40,
                 from ../../../include/datafile.hxx:20,
                 from ../../../include/bout.hxx:40:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  sys/test_options_fields.cxx
  Linking test_naulin_laplace
In file included from ../../include/bout/scorepwrapper.hxx:5,
                 from ../../include/bout/deriv_store.hxx:37,
                 from ../../include/bout/mesh.hxx:49,
                 from sys/test_options_fields.cxx:6:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55,
                 from sys/test_options_fields.cxx:4:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  test_multigrid_laplace.cxx
In file included from ../../../include/field.hxx:41,
                 from ../../../include/field3d.hxx:30,
                 from ../../../include/difops.hxx:39,
                 from ../../../include/bout.hxx:41,
                 from test_multigrid_laplace.cxx:26:
../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../../include/dataformat.hxx:40,
                 from ../../../include/datafile.hxx:20,
                 from ../../../include/bout.hxx:40:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Linking test_multigrid_laplace
  Compiling  sys/test_options.cxx
In file included from ../../include/bout/scorepwrapper.hxx:5,
                 from ../../include/bout/deriv_store.hxx:37,
                 from ../../include/bout/mesh.hxx:49,
                 from ./test_extras.hxx:12,
                 from sys/test_options.cxx:2:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55,
                 from sys/test_options.cxx:1:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  test-laplacexy.cxx
In file included from ../../../include/field.hxx:41,
                 from ../../../include/field3d.hxx:30,
                 from ../../../include/difops.hxx:39,
                 from ../../../include/bout.hxx:41,
                 from test-laplacexy.cxx:26:
../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../../include/dataformat.hxx:40,
                 from ../../../include/datafile.hxx:20,
                 from ../../../include/bout.hxx:40:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Linking test-laplacexy-short
  Compiling  test_laplace.cxx
In file included from ../../../include/field.hxx:41,
                 from ../../../include/field3d.hxx:30,
                 from ../../../include/difops.hxx:39,
                 from ../../../include/bout.hxx:41,
                 from test_laplace.cxx:6:
../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../../include/dataformat.hxx:40,
                 from ../../../include/datafile.hxx:20,
                 from ../../../include/bout.hxx:40:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
test_laplace.cxx: In function 'int main(int, char**)':
test_laplace.cxx:23:33: warning: 'const Field3D invert_laplace(const Field3D&, int, const Field2D*, const Field2D*, const Field2D*)' is deprecated [-Wdeprecated-declarations]
   23 |   Field3D flag0 = invert_laplace(input, 0);
      |                   ~~~~~~~~~~~~~~^~~~~~~~~~
In file included from ../../../include/bout_types.hxx:25,
                 from ../../../include/datafile.hxx:17:
../../../include/invert_laplace.hxx:284:26: note: declared here
  284 | DEPRECATED(const Field3D invert_laplace(const Field3D &b, int flags, const Field2D *a = nullptr,
      |                          ^~~~~~~~~~~~~~
../../../include/bout/deprecated.hxx:18:55: note: in definition of macro 'DEPRECATED'
   18 | #define DEPRECATED(func) __attribute__ ((deprecated)) func
      |                                                       ^~~~
test_laplace.cxx:24:33: warning: 'const Field3D invert_laplace(const Field3D&, int, const Field2D*, const Field2D*, const Field2D*)' is deprecated [-Wdeprecated-declarations]
   24 |   Field3D flag3 = invert_laplace(input, 3);
      |                   ~~~~~~~~~~~~~~^~~~~~~~~~
../../../include/invert_laplace.hxx:284:26: note: declared here
  284 | DEPRECATED(const Field3D invert_laplace(const Field3D &b, int flags, const Field2D *a = nullptr,
      |                          ^~~~~~~~~~~~~~
../../../include/bout/deprecated.hxx:18:55: note: in definition of macro 'DEPRECATED'
   18 | #define DEPRECATED(func) __attribute__ ((deprecated)) func
      |                                                       ^~~~
test_laplace.cxx:27:34: warning: 'const Field3D invert_laplace(const Field3D&, int, const Field2D*, const Field2D*, const Field2D*)' is deprecated [-Wdeprecated-declarations]
   27 |   Field3D flag0a = invert_laplace(input, 0, &a);
      |                    ~~~~~~~~~~~~~~^~~~~~~~~~~~~~
../../../include/invert_laplace.hxx:284:26: note: declared here
  284 | DEPRECATED(const Field3D invert_laplace(const Field3D &b, int flags, const Field2D *a = nullptr,
      |                          ^~~~~~~~~~~~~~
../../../include/bout/deprecated.hxx:18:55: note: in definition of macro 'DEPRECATED'
   18 | #define DEPRECATED(func) __attribute__ ((deprecated)) func
      |                                                       ^~~~
test_laplace.cxx:28:34: warning: 'const Field3D invert_laplace(const Field3D&, int, const Field2D*, const Field2D*, const Field2D*)' is deprecated [-Wdeprecated-declarations]
   28 |   Field3D flag3a = invert_laplace(input, 3, &a);
      |                    ~~~~~~~~~~~~~~^~~~~~~~~~~~~~
../../../include/invert_laplace.hxx:284:26: note: declared here
  284 | DEPRECATED(const Field3D invert_laplace(const Field3D &b, int flags, const Field2D *a = nullptr,
      |                          ^~~~~~~~~~~~~~
../../../include/bout/deprecated.hxx:18:55: note: in definition of macro 'DEPRECATED'
   18 | #define DEPRECATED(func) __attribute__ ((deprecated)) func
      |                                                       ^~~~
test_laplace.cxx:31:35: warning: 'const Field3D invert_laplace(const Field3D&, int, const Field2D*, const Field2D*, const Field2D*)' is deprecated [-Wdeprecated-declarations]
   31 |   Field3D flag0ac = invert_laplace(input, 0, &a, &c);
      |                     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
../../../include/invert_laplace.hxx:284:26: note: declared here
  284 | DEPRECATED(const Field3D invert_laplace(const Field3D &b, int flags, const Field2D *a = nullptr,
      |                          ^~~~~~~~~~~~~~
../../../include/bout/deprecated.hxx:18:55: note: in definition of macro 'DEPRECATED'
   18 | #define DEPRECATED(func) __attribute__ ((deprecated)) func
      |                                                       ^~~~
test_laplace.cxx:32:35: warning: 'const Field3D invert_laplace(const Field3D&, int, const Field2D*, const Field2D*, const Field2D*)' is deprecated [-Wdeprecated-declarations]
   32 |   Field3D flag3ac = invert_laplace(input, 3, &a, &c);
      |                     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
../../../include/invert_laplace.hxx:284:26: note: declared here
  284 | DEPRECATED(const Field3D invert_laplace(const Field3D &b, int flags, const Field2D *a = nullptr,
      |                          ^~~~~~~~~~~~~~
../../../include/bout/deprecated.hxx:18:55: note: in definition of macro 'DEPRECATED'
   18 | #define DEPRECATED(func) __attribute__ ((deprecated)) func
      |                                                       ^~~~
test_laplace.cxx:35:35: warning: 'const Field3D invert_laplace(const Field3D&, int, const Field2D*, const Field2D*, const Field2D*)' is deprecated [-Wdeprecated-declarations]
   35 |   Field3D flag0ad = invert_laplace(input, 0, &a, nullptr, &d);
      |                     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../include/invert_laplace.hxx:284:26: note: declared here
  284 | DEPRECATED(const Field3D invert_laplace(const Field3D &b, int flags, const Field2D *a = nullptr,
      |                          ^~~~~~~~~~~~~~
../../../include/bout/deprecated.hxx:18:55: note: in definition of macro 'DEPRECATED'
   18 | #define DEPRECATED(func) __attribute__ ((deprecated)) func
      |                                                       ^~~~
test_laplace.cxx:36:35: warning: 'const Field3D invert_laplace(const Field3D&, int, const Field2D*, const Field2D*, const Field2D*)' is deprecated [-Wdeprecated-declarations]
   36 |   Field3D flag3ad = invert_laplace(input, 3, &a, nullptr, &d);
      |                     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../include/invert_laplace.hxx:284:26: note: declared here
  284 | DEPRECATED(const Field3D invert_laplace(const Field3D &b, int flags, const Field2D *a = nullptr,
      |                          ^~~~~~~~~~~~~~
../../../include/bout/deprecated.hxx:18:55: note: in definition of macro 'DEPRECATED'
   18 | #define DEPRECATED(func) __attribute__ ((deprecated)) func
      |                                                       ^~~~
test_laplace.cxx:45:16: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations]
   45 |   lap->setFlags(4096);
      |   ~~~~~~~~~~~~~^~~~~~
In file included from test_laplace.cxx:7:
../../../include/invert_laplace.hxx:189:16: note: declared here
  189 |   virtual void setFlags(int f);
      |                ^~~~~~~~
test_laplace.cxx:47:16: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations]
   47 |   lap->setFlags(8192);
      |   ~~~~~~~~~~~~~^~~~~~
../../../include/invert_laplace.hxx:189:16: note: declared here
  189 |   virtual void setFlags(int f);
      |                ^~~~~~~~
test_laplace.cxx:52:16: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations]
   52 |   lap->setFlags(4096);
      |   ~~~~~~~~~~~~~^~~~~~
../../../include/invert_laplace.hxx:189:16: note: declared here
  189 |   virtual void setFlags(int f);
      |                ^~~~~~~~
test_laplace.cxx:54:16: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations]
   54 |   lap->setFlags(8192);
      |   ~~~~~~~~~~~~~^~~~~~
../../../include/invert_laplace.hxx:189:16: note: declared here
  189 |   virtual void setFlags(int f);
      |                ^~~~~~~~
test_laplace.cxx:59:16: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations]
   59 |   lap->setFlags(4096);
      |   ~~~~~~~~~~~~~^~~~~~
../../../include/invert_laplace.hxx:189:16: note: declared here
  189 |   virtual void setFlags(int f);
      |                ^~~~~~~~
test_laplace.cxx:61:16: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations]
   61 |   lap->setFlags(8192);
      |   ~~~~~~~~~~~~~^~~~~~
../../../include/invert_laplace.hxx:189:16: note: declared here
  189 |   virtual void setFlags(int f);
      |                ^~~~~~~~
test_laplace.cxx:67:16: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations]
   67 |   lap->setFlags(4096);
      |   ~~~~~~~~~~~~~^~~~~~
../../../include/invert_laplace.hxx:189:16: note: declared here
  189 |   virtual void setFlags(int f);
      |                ^~~~~~~~
test_laplace.cxx:69:16: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations]
   69 |   lap->setFlags(8192);
      |   ~~~~~~~~~~~~~^~~~~~
../../../include/invert_laplace.hxx:189:16: note: declared here
  189 |   virtual void setFlags(int f);
      |                ^~~~~~~~
  Linking test_laplace
  Compiling  test_io_hdf5.cxx
In file included from ../../../include/field.hxx:41,
                 from ../../../include/field3d.hxx:30,
                 from ../../../include/difops.hxx:39,
                 from ../../../include/bout.hxx:41,
                 from test_io_hdf5.cxx:10:
../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../../include/dataformat.hxx:40,
                 from ../../../include/datafile.hxx:20,
                 from ../../../include/bout.hxx:40:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Linking test_io_hdf5
  Compiling  test_io.cxx
In file included from ../../../include/field.hxx:41,
                 from ../../../include/field3d.hxx:30,
                 from ../../../include/difops.hxx:39,
                 from ../../../include/bout.hxx:41,
                 from test_io.cxx:10:
../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../../include/dataformat.hxx:40,
                 from ../../../include/datafile.hxx:20,
                 from ../../../include/bout.hxx:40:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  sys/test_msg_stack.cxx
In file included from sys/test_msg_stack.cxx:5:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55,
                 from sys/test_msg_stack.cxx:4:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
In file included from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:390:
sys/test_msg_stack.cxx: In member function 'virtual void MsgStackTest_SetPointTest_Test::TestBody()':
sys/test_msg_stack.cxx:77:33: warning: 'int MsgStack::setPoint()' is deprecated: Please use `MsgStack::push` with an empty message instead [-Wdeprecated-declarations]
   77 |     EXPECT_EQ(msg_stack.setPoint(), i);
      |               ~~~~~~~~~~~~~~~~~~^~
../../include/msg_stack.hxx:76:7: note: declared here
   76 |   int setPoint(); ///< get a message point
      |       ^~~~~~~~
  Linking test_io
  Compiling  sys/test_expressionparser.cxx
  Compiling  test_invpar.cxx
In file included from ../../include/bout/scorepwrapper.hxx:5,
                 from ../../include/bout/deriv_store.hxx:37,
                 from ../../include/bout/mesh.hxx:49,
                 from ./test_extras.hxx:12,
                 from sys/test_expressionparser.cxx:6:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55,
                 from sys/test_expressionparser.cxx:1:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
In file included from ../../../include/field.hxx:41,
                 from ../../../include/field3d.hxx:30,
                 from ../../../include/difops.hxx:39,
                 from ../../../include/bout.hxx:41,
                 from test_invpar.cxx:6:
../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../../include/dataformat.hxx:40,
                 from ../../../include/datafile.hxx:20,
                 from ../../../include/bout.hxx:40:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Linking test_invpar
  Compiling  invertable_operator.cxx
  Compiling  sys/test_boutexception.cxx
In file included from ../../../include/field.hxx:41,
                 from ../../../include/fieldperp.hxx:31,
                 from ../../../include/invert_laplace.hxx:41,
                 from invertable_operator.cxx:1:
../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../../include/field.hxx:34:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
In file included from ../../include/bout/scorepwrapper.hxx:5,
                 from ../../include/bout/deriv_store.hxx:37,
                 from ../../include/bout/mesh.hxx:49,
                 from ./test_extras.hxx:12,
                 from sys/test_boutexception.cxx:3:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55,
                 from sys/test_boutexception.cxx:1:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  src/test_bout++.cxx
  Linking invertable_operator
In file included from ../../include/field.hxx:41,
                 from ../../include/field3d.hxx:30,
                 from ../../include/difops.hxx:39,
                 from ../../include/bout.hxx:41,
                 from src/test_bout++.cxx:3:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55,
                 from src/test_bout++.cxx:1:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  test_interpolate.cxx
In file included from ../../../include/field.hxx:41,
                 from ../../../include/field3d.hxx:30,
                 from ../../../include/difops.hxx:39,
                 from ../../../include/bout.hxx:41,
                 from test_interpolate.cxx:13:
../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../../include/dataformat.hxx:40,
                 from ../../../include/datafile.hxx:20,
                 from ../../../include/bout.hxx:40:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Linking test_interpolate
  Compiling  solver/test_solverfactory.cxx
  Compiling  2fluid.cxx
In file included from ../../../include/field.hxx:41,
                 from ../../../include/field3d.hxx:30,
                 from ../../../include/difops.hxx:39,
                 from ../../../include/bout.hxx:41,
                 from 2fluid.cxx:6:
../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../../include/dataformat.hxx:40,
                 from ../../../include/datafile.hxx:20,
                 from ../../../include/bout.hxx:40:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
In file included from ../../include/bout/scorepwrapper.hxx:5,
                 from ../../include/bout/deriv_store.hxx:37,
                 from ../../include/bout/mesh.hxx:49,
                 from ./test_extras.hxx:12,
                 from solver/test_solverfactory.cxx:4:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55,
                 from solver/test_solverfactory.cxx:1:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Linking 2fluid
  Compiling  solver/test_solver.cxx
  Compiling  test_gyro.cxx
In file included from ../../../include/field.hxx:41,
                 from ../../../include/field3d.hxx:30,
                 from ../../../include/difops.hxx:39,
                 from ../../../include/bout.hxx:41,
                 from test_gyro.cxx:6:
../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../../include/dataformat.hxx:40,
                 from ../../../include/datafile.hxx:20,
                 from ../../../include/bout.hxx:40:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
In file included from ../../include/field.hxx:41,
                 from ../../include/field2d.hxx:34,
                 from solver/test_solver.cxx:4:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55,
                 from solver/test_solver.cxx:1:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Linking test_gyro
  Compiling  test_griddata.cxx
In file included from ../../../include/field.hxx:41,
                 from ../../../include/field3d.hxx:30,
                 from ../../../include/difops.hxx:39,
                 from ../../../include/bout.hxx:41,
                 from test_griddata.cxx:1:
../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../../include/dataformat.hxx:40,
                 from ../../../include/datafile.hxx:20,
                 from ../../../include/bout.hxx:40:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Linking test_griddata
  Compiling  test_griddata.cxx
In file included from ../../../include/field.hxx:41,
                 from ../../../include/field3d.hxx:30,
                 from ../../../include/difops.hxx:39,
                 from ../../../include/bout.hxx:41,
                 from test_griddata.cxx:1:
../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../../include/dataformat.hxx:40,
                 from ../../../include/datafile.hxx:20,
                 from ../../../include/bout.hxx:40:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Linking test_griddata
  Compiling  test_fieldfactory.cxx
In file included from ../../../include/field.hxx:41,
                 from ../../../include/field3d.hxx:30,
                 from ../../../include/difops.hxx:39,
                 from ../../../include/bout.hxx:41,
                 from test_fieldfactory.cxx:8:
../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../../include/dataformat.hxx:40,
                 from ../../../include/datafile.hxx:20,
                 from ../../../include/bout.hxx:40:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Linking test_fieldfactory
  Compiling  2fluid.cxx
In file included from ../../../include/field.hxx:41,
                 from ../../../include/field3d.hxx:30,
                 from ../../../include/difops.hxx:39,
                 from ../../../include/bout.hxx:41,
                 from 2fluid.cxx:6:
../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../../include/dataformat.hxx:40,
                 from ../../../include/datafile.hxx:20,
                 from ../../../include/bout.hxx:40:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  solver/test_fakesolver.cxx
  Linking 2fluid
In file included from ../../include/utils.hxx:38,
                 from ../../include/options.hxx:45,
                 from ../../include/bout/solver.hxx:42,
                 from solver/test_fakesolver.hxx:6,
                 from solver/test_fakesolver.cxx:1:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55,
                 from solver/test_fakesolver.hxx:4:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  test_delp2.cxx
In file included from ../../../include/field.hxx:41,
                 from ../../../include/field3d.hxx:30,
                 from ../../../include/difops.hxx:39,
                 from ../../../include/bout.hxx:41,
                 from ../../../include/bout/physicsmodel.hxx:40,
                 from test_delp2.cxx:1:
../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../../include/dataformat.hxx:40,
                 from ../../../include/datafile.hxx:20,
                 from ../../../include/bout.hxx:40:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  mesh/test_paralleltransform.cxx
In file included from ../../include/bout/scorepwrapper.hxx:5,
                 from ../../include/bout/deriv_store.hxx:37,
                 from ../../include/bout/mesh.hxx:49,
                 from ./test_extras.hxx:12,
                 from mesh/test_paralleltransform.cxx:3:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55,
                 from mesh/test_paralleltransform.cxx:1:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Linking test_delp2
  Compiling  test_cyclic.cxx
  Compiling  mesh/test_mesh.cxx
In file included from ../../../include/field.hxx:41,
                 from ../../../include/field3d.hxx:30,
                 from ../../../include/difops.hxx:39,
                 from ../../../include/bout.hxx:41,
                 from test_cyclic.cxx:6:
../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../../include/dataformat.hxx:40,
                 from ../../../include/datafile.hxx:20,
                 from ../../../include/bout.hxx:40:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
In file included from ../../include/bout/scorepwrapper.hxx:5,
                 from ../../include/bout/deriv_store.hxx:37,
                 from ../../include/bout/mesh.hxx:49,
                 from mesh/test_mesh.cxx:4:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55,
                 from mesh/test_mesh.cxx:1:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Linking test_cyclic
  Compiling  test-coordinates-initialization.cxx
In file included from ../../../include/field.hxx:41,
                 from ../../../include/field3d.hxx:30,
                 from ../../../include/difops.hxx:39,
                 from ../../../include/bout.hxx:41,
                 from test-coordinates-initialization.cxx:5:
../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../../include/dataformat.hxx:40,
                 from ../../../include/datafile.hxx:20,
                 from ../../../include/bout.hxx:40:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Linking test-coordinates-initialization
  Compiling  command-args.cxx
  Compiling  mesh/test_interpolation.cxx
In file included from ../../../include/field.hxx:41,
                 from ../../../include/field3d.hxx:30,
                 from ../../../include/difops.hxx:39,
                 from ../../../include/bout.hxx:41,
                 from command-args.cxx:2:
../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../../include/dataformat.hxx:40,
                 from ../../../include/datafile.hxx:20,
                 from ../../../include/bout.hxx:40:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
In file included from ../../include/bout/scorepwrapper.hxx:5,
                 from ../../include/bout/deriv_store.hxx:37,
                 from ../../include/bout/mesh.hxx:49,
                 from mesh/test_interpolation.cxx:3:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55,
                 from mesh/test_interpolation.cxx:1:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Linking command-args
  Compiling  test-bout-override-default-option.cxx
In file included from ../../../include/utils.hxx:38,
                 from ../../../include/options.hxx:45,
                 from test-bout-override-default-option.cxx:1:
../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/stdexcept:38,
                 from /usr/include/c++/13/system_error:43,
                 from /usr/include/c++/13/bits/ios_base.h:46,
                 from /usr/include/c++/13/streambuf:43,
                 from ../../../include/multiostream.hxx:4,
                 from ../../../include/output.hxx:32,
                 from ../../../include/options.hxx:44:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Linking test-bout-override-default-option
  Compiling  mesh/test_coordinates.cxx
  Compiling  test_beuler.cxx
In file included from ../../include/field.hxx:41,
                 from ../../include/field3d.hxx:30,
                 from ../../include/bout/paralleltransform.hxx:10,
                 from ../../include/bout/coordinates.hxx:36,
                 from mesh/test_coordinates.cxx:3:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55,
                 from mesh/test_coordinates.cxx:1:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
In file included from ../../../include/field.hxx:41,
                 from ../../../include/field3d.hxx:30,
                 from ../../../include/difops.hxx:39,
                 from ../../../include/bout.hxx:41,
                 from ../../../include/bout/physicsmodel.hxx:40,
                 from test_beuler.cxx:3:
../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ios:41,
                 from /usr/include/c++/13/istream:40,
                 from /usr/include/c++/13/sstream:40,
                 from /usr/include/c++/13/complex:45,
                 from /usr/include/mpich-x86_64/petsc/petscsystypes.h:315,
                 from /usr/include/mpich-x86_64/petsc/petscsys.h:47,
                 from /usr/include/mpich-x86_64/petsc/petscbag.h:4,
                 from /usr/include/mpich-x86_64/petsc/petsc.h:5,
                 from ../../../include/bout/petsclib.hxx:52,
                 from test_beuler.cxx:2:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Linking test_beuler
  Compiling  mesh/test_boutmesh.cxx
  Compiling  mesh/test_boundary_factory.cxx
In file included from ../../include/bout/scorepwrapper.hxx:5,
                 from ../../include/bout/deriv_store.hxx:37,
                 from ../../include/bout/mesh.hxx:49,
                 from ../../include/../src/mesh/impls/bout/boutmesh.hxx:7,
                 from mesh/test_boutmesh.cxx:3:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55,
                 from mesh/test_boutmesh.cxx:1:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
In file included from ../../include/field.hxx:41,
                 from ../../include/field2d.hxx:34,
                 from ../../include/boundary_op.hxx:9,
                 from ../../include/boundary_factory.hxx:7,
                 from mesh/test_boundary_factory.cxx:3:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55,
                 from mesh/test_boundary_factory.cxx:1:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/13/list:65,
                 from ../../include/utils.hxx:42,
                 from ../../include/field.hxx:44:
In member function 'std::__cxx11::_List_base<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >::_M_get_size() const',
    inlined from 'std::__cxx11::list<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >::_M_node_count() const' at /usr/include/c++/13/bits/stl_list.h:728:33,
    inlined from 'std::__cxx11::list<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >::size() const' at /usr/include/c++/13/bits/stl_list.h:1150:29,
    inlined from 'BoundaryFactoryTest_CreateTestBoundaryPositionalArguments_Test::TestBody()' at mesh/test_boundary_factory.cxx:81:3:
/usr/include/c++/13/bits/stl_list.h:480:59: warning: potential null pointer dereference [-Wnull-dereference]
  480 |       size_t _M_get_size() const { return _M_impl._M_node._M_size; }
      |                                                           ^~~~~~~
In member function 'std::__cxx11::list<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >::empty() const',
    inlined from 'BoundaryFactoryTest_CreateTestBoundaryKeywords_Test::TestBody()' at mesh/test_boundary_factory.cxx:93:3:
/usr/include/c++/13/bits/stl_list.h:1144:38: warning: potential null pointer dereference [-Wnull-dereference]
 1144 |       { return this->_M_impl._M_node._M_next == &this->_M_impl._M_node; }
      |                ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
  Compiling  mesh/parallel/test_shiftedmetric.cxx
  Compiling  mesh/data/test_gridfromoptions.cxx
In file included from ../../include/bout/bout_enum_class.hxx:27,
                 from ../../include/fft.hxx:33,
                 from mesh/parallel/test_shiftedmetric.cxx:3:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55,
                 from mesh/parallel/test_shiftedmetric.cxx:1:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
In file included from ../../include/utils.hxx:38,
                 from ../../include/options.hxx:45,
                 from mesh/data/test_gridfromoptions.cxx:3:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55,
                 from mesh/data/test_gridfromoptions.cxx:1:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  invert/test_fft.cxx
In file included from ../../include/bout/bout_enum_class.hxx:27,
                 from ../../include/fft.hxx:33,
                 from invert/test_fft.cxx:4:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55,
                 from invert/test_fft.cxx:1:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  include/test_mask.cxx
In file included from ../../include/bout/scorepwrapper.hxx:5,
                 from ../../include/bout/deriv_store.hxx:37,
                 from ../../include/bout/mesh.hxx:49,
                 from ../../include/mask.hxx:27,
                 from include/test_mask.cxx:3:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55,
                 from include/test_mask.cxx:1:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  include/test_interpolation_factory.cxx
In file included from ../../include/field.hxx:41,
                 from ../../include/field3d.hxx:30,
                 from ../../include/interpolation.hxx:31,
                 from include/test_interpolation_factory.cxx:3:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55,
                 from include/test_interpolation_factory.cxx:1:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  include/test_derivs.cxx
In file included from ../../include/bout/bout_enum_class.hxx:27,
                 from ../../include/fft.hxx:33,
                 from include/test_derivs.cxx:4:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55,
                 from include/test_derivs.cxx:1:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  include/test_cyclic_reduction.cxx
In file included from ../../include/utils.hxx:38,
                 from ../../include/cyclic_reduction.hxx:46,
                 from include/test_cyclic_reduction.cxx:4:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55,
                 from include/test_cyclic_reduction.cxx:1:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  include/bout/test_traits.cxx
  Compiling  include/bout/test_template_combinations.cxx
In file included from ../../include/field.hxx:41,
                 from include/bout/test_traits.cxx:3:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55,
                 from include/bout/test_traits.cxx:1:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  include/bout/test_region.cxx
In file included from ../../include/bout/scorepwrapper.hxx:5,
                 from ../../include/bout/deriv_store.hxx:37,
                 from ../../include/bout/mesh.hxx:49,
                 from include/bout/test_region.cxx:4:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55,
                 from include/bout/test_region.cxx:1:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  include/bout/test_monitor.cxx
In file included from ../../include/utils.hxx:38,
                 from ../../include/bout/monitor.hxx:6,
                 from include/bout/test_monitor.cxx:3:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55,
                 from include/bout/test_monitor.cxx:1:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  include/bout/test_macro_for_each.cxx
  Compiling  include/bout/test_generic_factory.cxx
  Compiling  include/bout/test_deriv_store.cxx
In file included from ../../include/bout/scorepwrapper.hxx:5,
                 from ../../include/bout/deriv_store.hxx:37,
                 from include/bout/test_deriv_store.cxx:3:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55,
                 from include/bout/test_deriv_store.cxx:1:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  include/bout/test_assert.cxx
  Compiling  include/bout/test_array.cxx
  Compiling  field/test_where.cxx
In file included from ../../include/field.hxx:41,
                 from field/test_where.cxx:3:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55,
                 from field/test_where.cxx:1:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  field/test_vector3d.cxx
In file included from ../../include/bout/scorepwrapper.hxx:5,
                 from ../../include/bout/deriv_store.hxx:37,
                 from ../../include/bout/mesh.hxx:49,
                 from field/test_vector3d.cxx:4:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55,
                 from field/test_vector3d.cxx:1:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  field/test_vector2d.cxx
In file included from ../../include/bout/scorepwrapper.hxx:5,
                 from ../../include/bout/deriv_store.hxx:37,
                 from ../../include/bout/mesh.hxx:49,
                 from field/test_vector2d.cxx:4:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55,
                 from field/test_vector2d.cxx:1:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  field/test_initialprofiles.cxx
In file included from ../../include/field.hxx:41,
                 from field/test_initialprofiles.cxx:4:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55,
                 from field/test_initialprofiles.cxx:1:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  field/test_fieldperp.cxx
  Compiling  field/test_fieldgroup.cxx
In file included from ../../include/bout/scorepwrapper.hxx:5,
                 from ../../include/bout/deriv_store.hxx:37,
                 from ../../include/bout/mesh.hxx:49,
                 from ./test_extras.hxx:12,
                 from field/test_fieldgroup.cxx:2:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55,
                 from field/test_fieldgroup.cxx:1:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  field/test_field_factory.cxx
In file included from ../../include/field.hxx:41,
                 from ../../include/field2d.hxx:34,
                 from field/test_field_factory.cxx:4:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55,
                 from field/test_field_factory.cxx:1:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  field/test_field3d.cxx
  Compiling  field/test_field2d.cxx
  Compiling  field/test_field.cxx
field/test_field2d.cxx: In member function 'virtual void Field2DTest_IterateOverRGN_XGUARDS_Test::TestBody()':
field/test_field2d.cxx:538:19: warning: loop variable 'index' creates a copy from type 'const std::vector<int>' [-Wrange-loop-construct]
  538 |   for (const auto index : test_indices) {
      |                   ^~~~~
field/test_field2d.cxx:538:19: note: use reference type to prevent copying
  538 |   for (const auto index : test_indices) {
      |                   ^~~~~
      |                   &
field/test_field2d.cxx: In member function 'virtual void Field2DTest_IterateOverRGN_YGUARDS_Test::TestBody()':
field/test_field2d.cxx:581:19: warning: loop variable 'index' creates a copy from type 'const std::vector<int>' [-Wrange-loop-construct]
  581 |   for (const auto index : test_indices) {
      |                   ^~~~~
field/test_field2d.cxx:581:19: note: use reference type to prevent copying
  581 |   for (const auto index : test_indices) {
      |                   ^~~~~
      |                   &
field/test_field2d.cxx: In member function 'virtual void Field2DTest_IterateOverRGN_ZGUARDS_Test::TestBody()':
field/test_field2d.cxx:623:19: warning: loop variable 'index' creates a copy from type 'const std::vector<int>' [-Wrange-loop-construct]
  623 |   for (const auto index : test_indices) {
      |                   ^~~~~
field/test_field2d.cxx:623:19: note: use reference type to prevent copying
  623 |   for (const auto index : test_indices) {
      |                   ^~~~~
      |                   &
field/test_field2d.cxx: In member function 'virtual void Field2DTest_IterateOverRGN_NOCORNERS_Test::TestBody()':
field/test_field2d.cxx:668:19: warning: loop variable 'index' creates a copy from type 'const std::vector<int>' [-Wrange-loop-construct]
  668 |   for (const auto index : test_indices) {
      |                   ^~~~~
field/test_field2d.cxx:668:19: note: use reference type to prevent copying
  668 |   for (const auto index : test_indices) {
      |                   ^~~~~
      |                   &
In file included from ../../include/bout/scorepwrapper.hxx:5,
                 from ../../include/bout/deriv_store.hxx:37,
                 from ../../include/bout/mesh.hxx:49,
                 from field/test_field.cxx:4:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55,
                 from field/test_field.cxx:1:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling gtest-all.o
  Compiling gmock-all.o
  Compiling bout_test_main.o
In file included from ../../include/bout/bout_enum_class.hxx:27,
                 from ../../include/fft.hxx:33,
                 from bout_test_main.cxx:5:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55,
                 from bout_test_main.cxx:3:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Linking bout_test_main.a
  Linking tests
/usr/bin/ld: /tmp/ccDx0QrP.ltrans4.ltrans.o: in function `OutputTest::OutputTest() [clone .lto_priv.0]':
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/unit/sys/test_output.cxx:11: warning: the use of `tmpnam' is dangerous, better use `mkstemp'
+ SEGFAULT_SIGNALS=segv
+ make check
  Linking tests
/usr/bin/ld: /tmp/ccNjORJC.ltrans4.ltrans.o: in function `OutputTest::OutputTest() [clone .lto_priv.0]':
/builddir/build/BUILD/BOUT++-v4.4.2/build_mpich/tests/unit/sys/test_output.cxx:11: warning: the use of `tmpnam' is dangerous, better use `mkstemp'
Running unit test
Running main() from bout_test_main.cxx
[==========] Running 1529 tests from 103 test suites.
[----------] Global test environment set-up.
[----------] 2 tests from ParseCommandLineArgsDeathTest
[----------] 2 tests from ParseCommandLineArgsDeathTest (6 ms total)
[----------] 10 tests from FieldTest (1 ms total)
[----------] 78 tests from Field2DTest (26 ms total)
[----------] 126 tests from Field3DTest (22 ms total)
[----------] 47 tests from FieldFactoryCreationTest/0 (9 ms total)
[----------] 47 tests from FieldFactoryCreationTest/1 (9 ms total)
[----------] 28 tests from FieldFactoryTest (6 ms total)
[----------] 6 tests from FieldFactoryCreateAndTransformTest (1 ms total)
[----------] 28 tests from FieldGroupTest (0 ms total)
[----------] 101 tests from FieldPerpTest (17 ms total)
[----------] 10 tests from InitialProfileTest (2 ms total)
[ RUN      ] Vector2DTest.ApplyBoundaryString
	Option input:transform_from_field_aligned = 1 (default)
[----------] 46 tests from Vector2DTest (5 ms total)
[----------] 49 tests from Vector3DTest (6 ms total)
[----------] 10 tests from WhereTest (1 ms total)
[----------] 12 tests from ArrayTest (0 ms total)
[----------] 4 tests from AssertTest (0 ms total)
[----------] 25 tests from DerivativeStoreTest (6 ms total)
[----------] 6 tests from GenericFactory (0 ms total)
[----------] 3 tests from MacroForEachTest (0 ms total)
[----------] 3 tests from MacroForEachFnTest (0 ms total)
[----------] 2 tests from MonitorTest (0 ms total)
[----------] 33 tests from RegionTest (5 ms total)
[----------] 6 tests from RegionIndexConversionTest (0 ms total)
[----------] 2 tests from RegionIndex2DTest (0 ms total)
[----------] 2 tests from RegionIndex3DTest (0 ms total)
[----------] 21 tests from RegionIndexTest/0 (0 ms total)
[----------] 21 tests from RegionIndexTest/1 (0 ms total)
[----------] 21 tests from RegionIndexTest/2 (0 ms total)
[----------] 23 tests from FieldIndexTest/0 (0 ms total)
[----------] 23 tests from FieldIndexTest/1 (0 ms total)
[----------] 48 tests from IndexOffsetTest (1 ms total)
[----------] 5 tests from TemplateCombinationsTest (0 ms total)
[----------] 6 tests from BoutTraitsTest (0 ms total)
[----------] 3 tests from CyclicReduction (0 ms total)
[----------] 9 tests from InterpolationFactoryTest (1 ms total)
[----------] 11 tests from MaskTest (2 ms total)
[----------] 34 tests from GridFromOptionsTest (117 ms total)
[----------] 9 tests from ShiftedMetricTest (1 ms total)
[----------] 5 tests from BoundaryFactoryTest (0 ms total)
[----------] 2 tests from BoutMeshTest (3 ms total)
[----------] 4 tests from CoordinatesTest (1 ms total)
[----------] 16 tests from Field3DInterpToTest (0 ms total)
[----------] 8 tests from Field2DInterpToTest (0 ms total)
[----------] 25 tests from MeshTest (1 ms total)
[----------] 6 tests from ParallelTransformTest (0 ms total)
[----------] 50 tests from SolverTest (17 ms total)
[----------] 12 tests from SolverFactoryTest (0 ms total)
[----------] 20 tests from ParseCommandLineArgs (0 ms total)
[----------] 3 tests from PrintStartupTest (0 ms total)
[----------] 4 tests from BoutInitialiseFunctions (0 ms total)
[----------] 3 tests from BoutExceptionTest (2424 ms total)
[----------] 1 test from BoutRhsFailTest (0 ms total)
[----------] 2 tests from BoutParallelRhsFailTest (0 ms total)
[----------] 1 test from BoutIterationFailTest (0 ms total)
[----------] 29 tests from ExpressionParserTest (0 ms total)
[----------] 1 test from ParseExceptionTest (0 ms total)
[----------] 11 tests from MsgStackTest (0 ms total)
[----------] 99 tests from OptionsTest (17 ms total)
[----------] 12 tests from OptionsFieldTest (2 ms total)
[----------] 13 tests from OptionsNetCDFTest (17 ms total)
[----------] 20 tests from OptionsReaderTest (1 ms total)
[----------] 20 tests from OutputTest (0 ms total)
[----------] 25 tests from RangeTest (0 ms total)
[----------] 13 tests from TimerTest (23 ms total)
[----------] 6 tests from TypeNameTest (0 ms total)
[----------] 14 tests from MatrixTest (0 ms total)
[----------] 14 tests from TensorTest (0 ms total)
[----------] 4 tests from Invert3x3Test (0 ms total)
[----------] 13 tests from NumberUtilitiesTest (0 ms total)
[----------] 18 tests from StringUtilitiesTest (0 ms total)
[----------] 4 tests from FunctionTraitsTest (0 ms total)
[----------] 3 tests from VariantTest (0 ms total)
[----------] 5 tests from FirstX/DerivativesTest (1 ms total)
[----------] 5 tests from FirstY/DerivativesTest (1 ms total)
[----------] 6 tests from FirstZ/DerivativesTest (2 ms total)
[----------] 2 tests from SecondX/DerivativesTest (0 ms total)
[----------] 2 tests from SecondY/DerivativesTest (0 ms total)
[----------] 3 tests from SecondZ/DerivativesTest (0 ms total)
[----------] 1 test from FourthX/DerivativesTest (0 ms total)
[----------] 1 test from FourthY/DerivativesTest (0 ms total)
[----------] 1 test from FourthZ/DerivativesTest (0 ms total)
[----------] 6 tests from UpwindX/DerivativesTestAdvection (1 ms total)
[----------] 6 tests from UpwindY/DerivativesTestAdvection (1 ms total)
[----------] 6 tests from UpwindZ/DerivativesTestAdvection (1 ms total)
[----------] 5 tests from FluxX/DerivativesTestAdvection (1 ms total)
[----------] 5 tests from FluxY/DerivativesTestAdvection (1 ms total)
[----------] 5 tests from FluxZ/DerivativesTestAdvection (1 ms total)
[----------] 5 tests from X/FirstDerivativesInterfaceTest (1 ms total)
[----------] 5 tests from FirstY/FirstDerivativesInterfaceTest (1 ms total)
[----------] 6 tests from FirstZ/FirstDerivativesInterfaceTest (1 ms total)
[----------] 2 tests from X/SecondDerivativesInterfaceTest (0 ms total)
[----------] 2 tests from Y/SecondDerivativesInterfaceTest (0 ms total)
[----------] 3 tests from Z/SecondDerivativesInterfaceTest (0 ms total)
[----------] 1 test from X/FourthDerivativesInterfaceTest (0 ms total)
[----------] 1 test from Y/FourthDerivativesInterfaceTest (0 ms total)
[----------] 1 test from Z/FourthDerivativesInterfaceTest (0 ms total)
[----------] 6 tests from X/UpwindDerivativesInterfaceTest (1 ms total)
[----------] 6 tests from Y/UpwindDerivativesInterfaceTest (1 ms total)
[----------] 6 tests from Z/UpwindDerivativesInterfaceTest (1 ms total)
[----------] 5 tests from X/FluxDerivativesInterfaceTest (1 ms total)
[----------] 5 tests from Y/FluxDerivativesInterfaceTest (1 ms total)
[----------] 5 tests from Z/FluxDerivativesInterfaceTest (1 ms total)
[----------] 10 tests from FFTEvenAndOddSamples/FFTTest (0 ms total)
[==========] 1529 tests from 103 test suites ran. (2802 ms total)
[  PASSED  ] 1529 tests.
======= Making 56 integrated tests ========
test-yupdown                      ✓   0.011 s
test-vec                          ✓   0.010 s
test-twistshift                   ✓   0.012 s
test-twistshift-staggered         ✓   0.010 s
test-subdir                       ✓   0.517 s
test-stopCheck                    ✓   0.011 s
test-stopCheck-file               ✓   0.011 s
test-squash                       S -  all_tests => False
test-solver                       ✓   0.011 s
test-snb                          ✓   0.011 s
test-smooth                       ✓   0.011 s
test-slepc-solver                 S -  slepc => False
test-restarting                   ✓   0.011 s
test-restart-io_hdf5              ✓   0.012 s
test-restart-io                   ✓   0.009 s
test-region-iterator              ✓   0.009 s
test-petsc_laplace_MAST-grid      S -  all_tests => False
test-petsc_laplace                S -  all_tests => False
test-options-netcdf               S -  False => False
test-naulin-laplace               ✓   0.009 s
test-multigrid_laplace            ✓   0.009 s
test-laplacexy                    S -  all_tests => False
test-laplacexy-short              ✓   0.009 s
test-laplace                      ✓   0.009 s
test-io_hdf5                      ✓   0.009 s
test-io                           ✓   0.009 s
test-invpar                       ✓   0.009 s
test-invertable-operator          ✓   0.009 s
test-interpolate                  ✓   0.009 s
test-interchange-instability      ✓   0.010 s
test-initial                      S -  not make => False
test-include                      S -  all_tests => False
test-gyro                         ✓   0.009 s
test-griddata                     ✓   0.009 s
test-griddata-yboundary-guards    ✓   0.009 s
test-fieldgroupComm               S -  all_tests => False
test-fieldfactory                 ✓   0.009 s
test-drift-instability            S -  all_tests => False
test-drift-instability-staggered  ✓   0.009 s
test-delp2                        ✓   0.009 s
test-cyclic                       ✓   0.009 s
test-coordinates-initialization   ✓   0.009 s
test-compile-examples             S -  all_tests => False
test-compile-examples-petsc       S -  all_tests => False
test-command-args                 ✓   0.009 s
test-collect                      S -  all_tests => False
test-code-style                   S -  not make => False
test-boutcore/simple-model        S -  not make => False
test-boutcore/print               S -  not make => False
test-boutcore/mms-ddz             S -  not make => False
test-boutcore/legacy-model        S -  not make => False
test-boutcore/collect             S -  not make => False
test-boutcore/collect-staggered   S -  not make => False
test-bout-override-default-option ✓   0.009 s
test-beuler                       ✓   0.009 s
test-attribs                      S -  all_tests => False
======= All tests passed in 0.86 seconds =======
======= Running 56 integrated tests ========
test-yupdown                      ✓   0.485 s
test-vec                          ✓   1.375 s
test-twistshift                   ✓   0.458 s
test-twistshift-staggered         ✓   0.459 s
test-subdir                       ✓   0.940 s
test-stopCheck                    ✓   0.021 s
test-stopCheck-file               ✓   2.600 s
test-squash                       S -  all_tests => False
test-solver                       ✓  13.163 s
test-snb                          ✓   0.194 s
test-smooth                       ✓   2.116 s
test-slepc-solver                 S -  slepc => False
test-restarting                   ✓   3.051 s
test-restart-io_hdf5              ✓   1.584 s
test-restart-io                   ✓   3.329 s
test-region-iterator              ✓   0.956 s
test-petsc_laplace_MAST-grid      S -  all_tests => False
test-petsc_laplace                S -  all_tests => False
test-options-netcdf               S -  False => False
test-naulin-laplace               ✓   3.032 s
test-multigrid_laplace            ✓ 443.880 s
test-laplacexy                    S -  all_tests => False
test-laplacexy-short              ✓ 156.520 s
test-laplace                      ✓   3.751 s
test-io_hdf5                      ✓  18.255 s
test-io                           ✓  34.404 s
test-invpar                       ✓ 113.879 s
test-invertable-operator          ✓   1.064 s
test-interpolate                  ✓   4.455 s
test-interchange-instability      ✓   7.125 s
test-initial                      ✓  13.810 s
test-include                      S -  all_tests => False
test-gyro                         ✓   1.834 s
test-griddata                     ✓   0.417 s
test-griddata-yboundary-guards    ✓   9.474 s
test-fieldgroupComm               S -  all_tests => False
test-fieldfactory                 ✓   1.874 s
test-drift-instability            S -  all_tests => False
test-drift-instability-staggered  ✓   9.351 s
test-delp2                        ✓  55.856 s
test-cyclic                       ✓   5.421 s
test-coordinates-initialization   ✓   0.723 s
test-compile-examples             S -  all_tests => False
test-compile-examples-petsc       S -  all_tests => False
test-command-args                 ✓   2.314 s
test-collect                      S -  all_tests => False
test-code-style                   ✓   0.048 s
test-boutcore/simple-model        ✓   0.692 s
test-boutcore/print               ✓   0.264 s
test-boutcore/mms-ddz             ✓   0.276 s
test-boutcore/legacy-model        ✓   0.605 s
test-boutcore/collect             ✓   0.379 s
test-boutcore/collect-staggered   ✓   0.373 s
test-bout-override-default-option ✓   0.051 s
test-beuler                       ✓   0.165 s
test-attribs                      S -  all_tests => False
======= All tests passed in 921.05 seconds =======
======= Making 21 MMS tests ========
wave-1d           ✓   0.010 s
wave-1d-y         ✓   0.010 s
upwinding3        S -  not make => False
time              S -  all_tests => False
time-petsc        S -  not make => False
spatial/fci       ✓   0.009 s
spatial/diffusion S -  all_tests => False
spatial/d2dz2     S -  all_tests => False
spatial/d2dx2     S -  all_tests => False
spatial/advection S -  all_tests => False
laplace           S -  all_tests => False
hw                S -  all_tests => False
diffusion2        S -  all_tests => False
diffusion         ✓   0.009 s
derivatives3      S -  not make => False
bracket           S -  not make => False
advection         S -  all_tests => False
advection/weno3   S -  all_tests => False
advection/upwind  S -  all_tests => False
advection/central S -  all_tests => False
advection/arakawa S -  all_tests => False
======= All tests passed in 0.04 seconds =======
======= Running 21 MMS tests ========
wave-1d           ✓   3.348 s
wave-1d-y         ✓   3.827 s
upwinding3        ✓   1.397 s
time              S -  all_tests => False
time-petsc        S -  all_tests => False
spatial/fci       ✓   4.120 s
spatial/diffusion S -  all_tests => False
spatial/d2dz2     S -  all_tests => False
spatial/d2dx2     S -  all_tests => False
spatial/advection S -  all_tests => False
laplace           S -  all_tests => False
hw                S -  all_tests => False
diffusion2        S -  all_tests => False
diffusion         ✓  11.694 s
derivatives3      ✓   0.868 s
bracket           ✓   0.286 s
advection         S -  all_tests => False
advection/weno3   S -  all_tests => False
advection/upwind  S -  all_tests => False
advection/central S -  all_tests => False
advection/arakawa S -  all_tests => False
======= All tests passed in 25.55 seconds =======
+ popd
~/build/BUILD/BOUT++-v4.4.2
+ '[' mpich = mpich ']'
+ . /etc/profile.d/modules.sh
++ '[' -n /bin/sh ']'
++ '[' sh = sh ']'
++ shell=sh
++ '[' -f /usr/share/Modules/init/sh ']'
++ . /usr/share/Modules/init/sh
+++ unset _mlshdbg
+++ '[' 0 = 1 ']'
+++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD'
+++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD'
+++ unset _mlre _mlIFS
+++ '[' -n x ']'
+++ _mlIFS=' 	
'
+++ IFS=' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
++++ eval 'echo ${LD_LIBRARY_PATH+x}'
+++++ echo x
+++ '[' -n x ']'
++++ eval 'echo ${LD_LIBRARY_PATH}'
+++++ echo /usr/lib64/mpich/lib
+++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' '
+++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH
++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}'
+++++ echo
+++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
++++ eval 'echo ${LD_PRELOAD+x}'
+++++ echo
+++ '[' -n '' ']'
+++ _mlrv=MODULES_RUNENV_LD_PRELOAD
++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}'
+++++ echo
+++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' '
+++ '[' -n '__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']'
+++ _mlre='eval __MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 '
++++ eval '__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\''' 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++++ __MODULES_QUAR_LD_LIBRARY_PATH=/usr/lib64/mpich/lib
+++++ LD_LIBRARY_PATH=
+++++ LD_PRELOAD=
+++++ __MODULES_QUARANTINE_SET=1
+++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++ _mlcode='_module_raw() {
   eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")";
   _mlstatus=$?;
   return $_mlstatus;
};
module() {
   local _mlredir=0;
   if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then
      if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then
         _mlredir=0;
      elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then
         _mlredir=1;
      fi;
   fi;
   case " $@ " in
      *'\'' --no-redirect '\''*) _mlredir=0 ;;
      *'\'' --redirect '\''*) _mlredir=1 ;;
   esac;
   if [ $_mlredir -eq 0 ]; then
      _module_raw "$@";
   else
      _module_raw "$@" 2>&1;
   fi;
};
ml() { module ml "$@"; };
MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD;
unset __MODULES_AUTOINIT_INPROGRESS;
MODULESHOME=/usr/share/Modules; export MODULESHOME;
test 0;'
+++ _mlret=0
+++ '[' -n x ']'
+++ IFS=' 	
'
+++ unset _mlIFS
+++ unset _mlre _mlv _mlrv
+++ '[' 0 -eq 0 ']'
+++ eval '_module_raw() {
   eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")";
   _mlstatus=$?;
   return $_mlstatus;
};
module() {
   local _mlredir=0;
   if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then
      if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then
         _mlredir=0;
      elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then
         _mlredir=1;
      fi;
   fi;
   case " $@ " in
      *'\'' --no-redirect '\''*) _mlredir=0 ;;
      *'\'' --redirect '\''*) _mlredir=1 ;;
   esac;
   if [ $_mlredir -eq 0 ]; then
      _module_raw "$@";
   else
      _module_raw "$@" 2>&1;
   fi;
};
ml() { module ml "$@"; };
MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD;
unset __MODULES_AUTOINIT_INPROGRESS;
MODULESHOME=/usr/share/Modules; export MODULESHOME;
test 0;'
++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl
++++ export MODULES_CMD
++++ unset __MODULES_AUTOINIT_INPROGRESS
++++ MODULESHOME=/usr/share/Modules
++++ export MODULESHOME
++++ test 0
+++ '[' /bin/sh '!=' '' ']'
+++ export -f _module_raw
+++ export -f module
++++ type -t ml
+++ '[' function = function ']'
+++ export -f ml
+++ unset _mlcode _mlret
+++ '[' -n '' ']'
+ module unload mpi/mpich-x86_64
+ local _mlredir=0
+ '[' -n '' ']'
+ case " $@ " in
+ '[' 0 -eq 0 ']'
+ _module_raw unload mpi/mpich-x86_64
++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh unload mpi/mpich-x86_64
+ eval 'unset LD_LIBRARY_PATH;
unset MPI_COMPILER;
MANPATH=/usr/share/man:; export MANPATH;
unset MPI_INCLUDE;
unset MPI_MAN;
unset MPI_PYTHON_SITEARCH;
unset _LMFILES_;
unset LOADEDMODULES;
PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH;
unset MPI_PYTHON3_SITEARCH;
unset MPI_FORTRAN_MOD_DIR;
unset MPI_HOME;
unset __MODULES_LMCONFLICT;
__MODULES_SHARE_MANPATH=:1; export __MODULES_SHARE_MANPATH;
unset MPI_SYSCONFIG;
unset MPI_SUFFIX;
__MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH;
unset MPI_PYTHON2_SITEARCH;
unset MPI_LIB;
PATH=/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH;
unset MPI_BIN;
test 0;'
++ unset LD_LIBRARY_PATH
++ unset MPI_COMPILER
++ MANPATH=/usr/share/man:
++ export MANPATH
++ unset MPI_INCLUDE
++ unset MPI_MAN
++ unset MPI_PYTHON_SITEARCH
++ unset _LMFILES_
++ unset LOADEDMODULES
++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig
++ export PKG_CONFIG_PATH
++ unset MPI_PYTHON3_SITEARCH
++ unset MPI_FORTRAN_MOD_DIR
++ unset MPI_HOME
++ unset __MODULES_LMCONFLICT
++ __MODULES_SHARE_MANPATH=:1
++ export __MODULES_SHARE_MANPATH
++ unset MPI_SYSCONFIG
++ unset MPI_SUFFIX
++ __MODULES_SHARE_PKG_CONFIG_PATH=:1
++ export __MODULES_SHARE_PKG_CONFIG_PATH
++ unset MPI_PYTHON2_SITEARCH
++ unset MPI_LIB
++ PATH=/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin
++ export PATH
++ unset MPI_BIN
++ test 0
+ _mlstatus=0
+ return 0
+ for mpi in mpich openmpi
+ '[' openmpi = mpich ']'
+ . /etc/profile.d/modules.sh
++ '[' -n /bin/sh ']'
++ '[' sh = sh ']'
++ shell=sh
++ '[' -f /usr/share/Modules/init/sh ']'
++ . /usr/share/Modules/init/sh
+++ unset _mlshdbg
+++ '[' 0 = 1 ']'
+++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD'
+++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD'
+++ unset _mlre _mlIFS
+++ '[' -n x ']'
+++ _mlIFS=' 	
'
+++ IFS=' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
++++ eval 'echo ${LD_LIBRARY_PATH+x}'
+++++ echo
+++ '[' -n '' ']'
+++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH
++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}'
+++++ echo
+++ _mlre='LD_LIBRARY_PATH='\'''\'' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
++++ eval 'echo ${LD_PRELOAD+x}'
+++++ echo
+++ '[' -n '' ']'
+++ _mlrv=MODULES_RUNENV_LD_PRELOAD
++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}'
+++++ echo
+++ _mlre='LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' '
+++ '[' -n 'LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']'
+++ _mlre='eval LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 '
++++ eval 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++++ LD_LIBRARY_PATH=
+++++ LD_PRELOAD=
+++++ __MODULES_QUARANTINE_SET=1
+++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++ _mlcode='_module_raw() {
   eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")";
   _mlstatus=$?;
   return $_mlstatus;
};
module() {
   local _mlredir=0;
   if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then
      if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then
         _mlredir=0;
      elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then
         _mlredir=1;
      fi;
   fi;
   case " $@ " in
      *'\'' --no-redirect '\''*) _mlredir=0 ;;
      *'\'' --redirect '\''*) _mlredir=1 ;;
   esac;
   if [ $_mlredir -eq 0 ]; then
      _module_raw "$@";
   else
      _module_raw "$@" 2>&1;
   fi;
};
ml() { module ml "$@"; };
MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD;
unset __MODULES_AUTOINIT_INPROGRESS;
MODULESHOME=/usr/share/Modules; export MODULESHOME;
LOADEDMODULES=; export LOADEDMODULES;
test 0;'
+++ _mlret=0
+++ '[' -n x ']'
+++ IFS=' 	
'
+++ unset _mlIFS
+++ unset _mlre _mlv _mlrv
+++ '[' 0 -eq 0 ']'
+++ eval '_module_raw() {
   eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")";
   _mlstatus=$?;
   return $_mlstatus;
};
module() {
   local _mlredir=0;
   if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then
      if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then
         _mlredir=0;
      elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then
         _mlredir=1;
      fi;
   fi;
   case " $@ " in
      *'\'' --no-redirect '\''*) _mlredir=0 ;;
      *'\'' --redirect '\''*) _mlredir=1 ;;
   esac;
   if [ $_mlredir -eq 0 ]; then
      _module_raw "$@";
   else
      _module_raw "$@" 2>&1;
   fi;
};
ml() { module ml "$@"; };
MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD;
unset __MODULES_AUTOINIT_INPROGRESS;
MODULESHOME=/usr/share/Modules; export MODULESHOME;
LOADEDMODULES=; export LOADEDMODULES;
test 0;'
++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl
++++ export MODULES_CMD
++++ unset __MODULES_AUTOINIT_INPROGRESS
++++ MODULESHOME=/usr/share/Modules
++++ export MODULESHOME
++++ LOADEDMODULES=
++++ export LOADEDMODULES
++++ test 0
+++ '[' /bin/sh '!=' '' ']'
+++ export -f _module_raw
+++ export -f module
++++ type -t ml
+++ '[' function = function ']'
+++ export -f ml
+++ unset _mlcode _mlret
+++ '[' -n '' ']'
+ module load mpi/openmpi-x86_64
+ local _mlredir=0
+ '[' -n '' ']'
+ case " $@ " in
+ '[' 0 -eq 0 ']'
+ _module_raw load mpi/openmpi-x86_64
++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh load mpi/openmpi-x86_64
+ eval 'MPI_COMPILER=openmpi-x86_64; export MPI_COMPILER;
LD_LIBRARY_PATH=/usr/lib64/openmpi/lib; export LD_LIBRARY_PATH;
MANPATH=/usr/share/man/openmpi-x86_64:/usr/share/man:; export MANPATH;
MPI_INCLUDE=/usr/include/openmpi-x86_64; export MPI_INCLUDE;
MPI_MAN=/usr/share/man/openmpi-x86_64; export MPI_MAN;
_LMFILES_=/usr/share/modulefiles/mpi/openmpi-x86_64; export _LMFILES_;
LOADEDMODULES=mpi/openmpi-x86_64; export LOADEDMODULES;
PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH;
MPI_PYTHON3_SITEARCH=/usr/lib64/python3.11/site-packages/openmpi; export MPI_PYTHON3_SITEARCH;
MPI_HOME=/usr/lib64/openmpi; export MPI_HOME;
MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi; export MPI_FORTRAN_MOD_DIR;
__MODULES_LMALTNAME=mpi/openmpi-x86_64\&as\|mpi/default\&as\|mpi/latest; export __MODULES_LMALTNAME;
__MODULES_LMCONFLICT=mpi/openmpi-x86_64\&mpi; export __MODULES_LMCONFLICT;
__MODULES_SHARE_MANPATH=:2; export __MODULES_SHARE_MANPATH;
MPI_SUFFIX=_openmpi; export MPI_SUFFIX;
MPI_SYSCONFIG=/etc/openmpi-x86_64; export MPI_SYSCONFIG;
__MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH;
MPI_LIB=/usr/lib64/openmpi/lib; export MPI_LIB;
PATH=/usr/lib64/openmpi/bin:/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH;
MPI_BIN=/usr/lib64/openmpi/bin; export MPI_BIN;
test 0;'
++ MPI_COMPILER=openmpi-x86_64
~/build/BUILD/BOUT++-v4.4.2/build_openmpi ~/build/BUILD/BOUT++-v4.4.2
++ export MPI_COMPILER
++ LD_LIBRARY_PATH=/usr/lib64/openmpi/lib
++ export LD_LIBRARY_PATH
++ MANPATH=/usr/share/man/openmpi-x86_64:/usr/share/man:
++ export MANPATH
++ MPI_INCLUDE=/usr/include/openmpi-x86_64
++ export MPI_INCLUDE
++ MPI_MAN=/usr/share/man/openmpi-x86_64
++ export MPI_MAN
++ _LMFILES_=/usr/share/modulefiles/mpi/openmpi-x86_64
++ export _LMFILES_
++ LOADEDMODULES=mpi/openmpi-x86_64
++ export LOADEDMODULES
++ PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig
++ export PKG_CONFIG_PATH
++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.11/site-packages/openmpi
++ export MPI_PYTHON3_SITEARCH
++ MPI_HOME=/usr/lib64/openmpi
++ export MPI_HOME
++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi
++ export MPI_FORTRAN_MOD_DIR
++ __MODULES_LMALTNAME='mpi/openmpi-x86_64&as|mpi/default&as|mpi/latest'
++ export __MODULES_LMALTNAME
++ __MODULES_LMCONFLICT='mpi/openmpi-x86_64&mpi'
++ export __MODULES_LMCONFLICT
++ __MODULES_SHARE_MANPATH=:2
++ export __MODULES_SHARE_MANPATH
++ MPI_SUFFIX=_openmpi
++ export MPI_SUFFIX
++ MPI_SYSCONFIG=/etc/openmpi-x86_64
++ export MPI_SYSCONFIG
++ __MODULES_SHARE_PKG_CONFIG_PATH=:1
++ export __MODULES_SHARE_PKG_CONFIG_PATH
++ MPI_LIB=/usr/lib64/openmpi/lib
++ export MPI_LIB
++ PATH=/usr/lib64/openmpi/bin:/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin
++ export PATH
++ MPI_BIN=/usr/lib64/openmpi/bin
++ export MPI_BIN
++ test 0
+ _mlstatus=0
+ return 0
+ export OMPI_MCA_rmaps_base_oversubscribe=1
+ OMPI_MCA_rmaps_base_oversubscribe=1
+ pushd build_openmpi
+ export OMPI_MCA_rmaps_base_oversubscribe=yes
+ OMPI_MCA_rmaps_base_oversubscribe=yes
+ export HDF5_USE_FILE_LOCKING=FALSE
+ HDF5_USE_FILE_LOCKING=FALSE
+ export BOUT_TEST_TIMEOUT=15m
+ BOUT_TEST_TIMEOUT=15m
+ sed 's/ 3s / 30s /' tests/integrated/test-coordinates-initialization/runtest
+ make -j2 build-check
#!/bin/bash
make || exit
test -z $MPIRUN  && MPIRUN='mpirun -np'
# Kill the test after 3 seconds, if it hasn't already exited
OMP_NUM_THREADS=1 $MPIRUN 3 timeout 30s ./test-coordinates-initialization
e=$?
if test $e -ne 0
then
    echo "The test failed. That can be caused by a timeout."
    echo "If this test is run on high load, it may fail occasionally."
    echo "The load is:"
    uptime
fi
exit $e
make --no-print-directory -C tests/integrated
make --no-print-directory -C tests/MMS
  Compiling  wave.cxx
  Compiling  test_yupdown.cxx
In file included from ../../..//include/field.hxx:41,
                 from ../../..//include/field3d.hxx:30,
                 from ../../..//include/difops.hxx:39,
                 from ../../..//include/bout.hxx:41,
                 from ../../..//include/bout/physicsmodel.hxx:40,
                 from wave.cxx:1:
../../..//include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../..//include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ios:41,
                 from /usr/include/c++/13/ostream:40,
                 from /usr/include/c++/13/iostream:41,
                 from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57,
                 from /usr/include/openmpi-x86_64/mpi.h:2887,
                 from ../../..//include/boutcomm.hxx:33,
                 from ../../..//include/bout.hxx:39:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
In file included from ../../../include/field.hxx:41,
                 from ../../../include/field3d.hxx:30,
                 from ../../../include/difops.hxx:39,
                 from ../../../include/bout.hxx:41,
                 from test_yupdown.cxx:1:
../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ios:41,
                 from /usr/include/c++/13/ostream:40,
                 from /usr/include/c++/13/iostream:41,
                 from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57,
                 from /usr/include/openmpi-x86_64/mpi.h:2887,
                 from ../../../include/boutcomm.hxx:33,
                 from ../../../include/bout.hxx:39:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Linking test_yupdown
  Compiling  testVec.cxx
  Linking wave
In file included from ../../../include/field.hxx:41,
                 from ../../../include/field3d.hxx:30,
                 from ../../../include/difops.hxx:39,
                 from ../../../include/bout.hxx:41,
                 from ../../../include/bout/physicsmodel.hxx:40,
                 from testVec.cxx:2:
../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ios:41,
                 from /usr/include/c++/13/ostream:40,
                 from /usr/include/c++/13/iostream:41,
                 from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57,
                 from /usr/include/openmpi-x86_64/mpi.h:2887,
                 from ../../../include/boutcomm.hxx:33,
                 from ../../../include/bout.hxx:39:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  wave.cxx
  Linking testVec
In file included from ../../..//include/field.hxx:41,
                 from ../../..//include/field3d.hxx:30,
                 from ../../..//include/difops.hxx:39,
                 from ../../..//include/bout.hxx:41,
                 from ../../..//include/bout/physicsmodel.hxx:40,
                 from wave.cxx:1:
../../..//include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../..//include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ios:41,
                 from /usr/include/c++/13/ostream:40,
                 from /usr/include/c++/13/iostream:41,
                 from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57,
                 from /usr/include/openmpi-x86_64/mpi.h:2887,
                 from ../../..//include/boutcomm.hxx:33,
                 from ../../..//include/bout.hxx:39:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  test-twistshift.cxx
In file included from ../../../include/field.hxx:41,
                 from ../../../include/field3d.hxx:30,
                 from ../../../include/difops.hxx:39,
                 from ../../../include/bout.hxx:41,
                 from test-twistshift.cxx:1:
../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ios:41,
                 from /usr/include/c++/13/ostream:40,
                 from /usr/include/c++/13/iostream:41,
                 from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57,
                 from /usr/include/openmpi-x86_64/mpi.h:2887,
                 from ../../../include/boutcomm.hxx:33,
                 from ../../../include/bout.hxx:39:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Linking wave
  Compiling  fci_mms.cxx
  Linking test-twistshift
In file included from ../../../../include/field.hxx:41,
                 from ../../../../include/field3d.hxx:30,
                 from ../../../../include/difops.hxx:39,
                 from ../../../../include/bout.hxx:41,
                 from fci_mms.cxx:1:
../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ios:41,
                 from /usr/include/c++/13/ostream:40,
                 from /usr/include/c++/13/iostream:41,
                 from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57,
                 from /usr/include/openmpi-x86_64/mpi.h:2887,
                 from ../../../../include/boutcomm.hxx:33,
                 from ../../../../include/bout.hxx:39:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  test-twistshift.cxx
In file included from ../../../include/field.hxx:41,
                 from ../../../include/field3d.hxx:30,
                 from ../../../include/difops.hxx:39,
                 from ../../../include/bout.hxx:41,
                 from test-twistshift.cxx:1:
../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ios:41,
                 from /usr/include/c++/13/ostream:40,
                 from /usr/include/c++/13/iostream:41,
                 from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57,
                 from /usr/include/openmpi-x86_64/mpi.h:2887,
                 from ../../../include/boutcomm.hxx:33,
                 from ../../../include/bout.hxx:39:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Linking fci_mms
  Linking test-twistshift
  Compiling  diffusion.cxx
In file included from ../../..//include/field.hxx:41,
                 from ../../..//include/field3d.hxx:30,
                 from ../../..//include/difops.hxx:39,
                 from ../../..//include/bout.hxx:41,
                 from diffusion.cxx:1:
../../..//include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../..//include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ios:41,
                 from /usr/include/c++/13/ostream:40,
                 from /usr/include/c++/13/iostream:41,
                 from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57,
                 from /usr/include/openmpi-x86_64/mpi.h:2887,
                 from ../../..//include/boutcomm.hxx:33,
                 from ../../..//include/bout.hxx:39:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  fuu.cxx
In file included from ../../../../include/field.hxx:41,
                 from ../../../../include/field3d.hxx:30,
                 from ../../../../include/difops.hxx:39,
                 from ../../../../include/bout.hxx:41,
                 from fuu.hxx:4,
                 from fuu.cxx:1:
../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ios:41,
                 from /usr/include/c++/13/ostream:40,
                 from /usr/include/c++/13/iostream:41,
                 from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57,
                 from /usr/include/openmpi-x86_64/mpi.h:2887,
                 from ../../../../include/boutcomm.hxx:33,
                 from ../../../../include/bout.hxx:39:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Adding fuu.o to /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-subdir/fuu.a
  Compiling  bar.cxx
In file included from ../../../../include/field.hxx:41,
                 from ../../../../include/field3d.hxx:30,
                 from ../../../../include/difops.hxx:39,
                 from ../../../../include/bout.hxx:41,
                 from bar.cxx:1:
../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ios:41,
                 from /usr/include/c++/13/ostream:40,
                 from /usr/include/c++/13/iostream:41,
                 from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57,
                 from /usr/include/openmpi-x86_64/mpi.h:2887,
                 from ../../../../include/boutcomm.hxx:33,
                 from ../../../../include/bout.hxx:39:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Linking cyto
  Adding bar.o to /builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/integrated/test-subdir/bar.a
  Compiling  subdirs.cxx
In file included from ../../../include/field.hxx:41,
                 from ../../../include/field3d.hxx:30,
                 from ../../../include/difops.hxx:39,
                 from ../../../include/bout.hxx:41,
                 from ../../../include/bout/physicsmodel.hxx:40,
                 from subdirs.cxx:1:
../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ios:41,
                 from /usr/include/c++/13/ostream:40,
                 from /usr/include/c++/13/iostream:41,
                 from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57,
                 from /usr/include/openmpi-x86_64/mpi.h:2887,
                 from ../../../include/boutcomm.hxx:33,
                 from ../../../include/bout.hxx:39:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  test_extras.cxx
In file included from ../../include/bout/scorepwrapper.hxx:5,
                 from ../../include/bout/deriv_store.hxx:37,
                 from ../../include/bout/mesh.hxx:49,
                 from test_extras.hxx:12,
                 from test_extras.cxx:2:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55,
                 from test_extras.cxx:1:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Linking subdirs
  Compiling  test_stopCheck.cxx
In file included from ../../../include/field.hxx:41,
                 from ../../../include/field3d.hxx:30,
                 from ../../../include/difops.hxx:39,
                 from ../../../include/bout.hxx:41,
                 from test_stopCheck.cxx:6:
../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ios:41,
                 from /usr/include/c++/13/ostream:40,
                 from /usr/include/c++/13/iostream:41,
                 from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57,
                 from /usr/include/openmpi-x86_64/mpi.h:2887,
                 from ../../../include/boutcomm.hxx:33,
                 from ../../../include/bout.hxx:39:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  sys/test_variant.cxx
In file included from ../../include/utils.hxx:38,
                 from ../../include/bout/sys/variant.hxx:26,
                 from sys/test_variant.cxx:3:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55,
                 from sys/test_variant.cxx:1:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  sys/test_utils.cxx
  Linking test_stopCheck
In file included from ../../include/utils.hxx:38,
                 from sys/test_utils.cxx:2:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55,
                 from sys/test_utils.cxx:1:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  test_stopCheck.cxx
In file included from ../../../include/field.hxx:41,
                 from ../../../include/field3d.hxx:30,
                 from ../../../include/difops.hxx:39,
                 from ../../../include/bout.hxx:41,
                 from test_stopCheck.cxx:6:
../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ios:41,
                 from /usr/include/c++/13/ostream:40,
                 from /usr/include/c++/13/iostream:41,
                 from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57,
                 from /usr/include/openmpi-x86_64/mpi.h:2887,
                 from ../../../include/boutcomm.hxx:33,
                 from ../../../include/bout.hxx:39:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Linking test_stopCheck
  Compiling  test_solver.cxx
In file included from ../../../include/field.hxx:41,
                 from ../../../include/field3d.hxx:30,
                 from ../../../include/difops.hxx:39,
                 from ../../../include/bout.hxx:41,
                 from ../../../include/bout/physicsmodel.hxx:40,
                 from test_solver.cxx:2:
../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ios:41,
                 from /usr/include/c++/13/ostream:40,
                 from /usr/include/c++/13/iostream:41,
                 from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57,
                 from /usr/include/openmpi-x86_64/mpi.h:2887,
                 from ../../../include/boutcomm.hxx:33,
                 from ../../../include/bout.hxx:39:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  sys/test_type_name.cxx
In file included from ../../include/field.hxx:41,
                 from ../../include/field2d.hxx:34,
                 from sys/test_type_name.cxx:3:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55,
                 from sys/test_type_name.cxx:1:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  sys/test_timer.cxx
  Linking test_solver
In file included from ../../include/bout/sys/timer.hxx:11,
                 from sys/test_timer.cxx:4:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55,
                 from sys/test_timer.cxx:1:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  test_snb.cxx
In file included from ../../../include/field.hxx:41,
                 from ../../../include/field3d.hxx:30,
                 from ../../../include/invert_parderiv.hxx:34,
                 from ../../../include/bout/snb.hxx:1,
                 from test_snb.cxx:1:
../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../../include/field.hxx:34:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  sys/test_range.cxx
  Compiling  sys/test_output.cxx
  Linking test_snb
  Compiling  test_smooth.cxx
In file included from ../../../include/field.hxx:41,
                 from ../../../include/field3d.hxx:30,
                 from ../../../include/difops.hxx:39,
                 from ../../../include/bout.hxx:41,
                 from test_smooth.cxx:6:
../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ios:41,
                 from /usr/include/c++/13/ostream:40,
                 from /usr/include/c++/13/iostream:41,
                 from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57,
                 from /usr/include/openmpi-x86_64/mpi.h:2887,
                 from ../../../include/boutcomm.hxx:33,
                 from ../../../include/bout.hxx:39:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  sys/test_optionsreader.cxx
In file included from ../../include/bout/scorepwrapper.hxx:5,
                 from ../../include/bout/deriv_store.hxx:37,
                 from ../../include/bout/mesh.hxx:49,
                 from ./test_extras.hxx:12,
                 from sys/test_optionsreader.cxx:2:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55,
                 from sys/test_optionsreader.cxx:1:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Linking test_smooth
  Compiling  test_restarting.cxx
In file included from ../../../include/field.hxx:41,
                 from ../../../include/field3d.hxx:30,
                 from ../../../include/difops.hxx:39,
                 from ../../../include/bout.hxx:41,
                 from ../../../include/bout/physicsmodel.hxx:40,
                 from test_restarting.cxx:1:
../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ios:41,
                 from /usr/include/c++/13/ostream:40,
                 from /usr/include/c++/13/iostream:41,
                 from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57,
                 from /usr/include/openmpi-x86_64/mpi.h:2887,
                 from ../../../include/boutcomm.hxx:33,
                 from ../../../include/bout.hxx:39:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Linking test_restarting
  Compiling  test-restart-io.cxx
In file included from ../../../include/field.hxx:41,
                 from ../../../include/field3d.hxx:30,
                 from ../../../include/difops.hxx:39,
                 from ../../../include/bout.hxx:41,
                 from ../../../include/bout/physicsmodel.hxx:40,
                 from test-restart-io.cxx:1:
../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ios:41,
                 from /usr/include/c++/13/ostream:40,
                 from /usr/include/c++/13/iostream:41,
                 from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57,
                 from /usr/include/openmpi-x86_64/mpi.h:2887,
                 from ../../../include/boutcomm.hxx:33,
                 from ../../../include/bout.hxx:39:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  sys/test_options_netcdf.cxx
In file included from ../../include/bout/scorepwrapper.hxx:5,
                 from ../../include/bout/deriv_store.hxx:37,
                 from ../../include/bout/mesh.hxx:49,
                 from sys/test_options_netcdf.cxx:7:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55,
                 from sys/test_options_netcdf.cxx:5:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Linking test-restart-io
  Compiling  test-restart-io.cxx
In file included from ../../../include/field.hxx:41,
                 from ../../../include/field3d.hxx:30,
                 from ../../../include/difops.hxx:39,
                 from ../../../include/bout.hxx:41,
                 from ../../../include/bout/physicsmodel.hxx:40,
                 from test-restart-io.cxx:1:
../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ios:41,
                 from /usr/include/c++/13/ostream:40,
                 from /usr/include/c++/13/iostream:41,
                 from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57,
                 from /usr/include/openmpi-x86_64/mpi.h:2887,
                 from ../../../include/boutcomm.hxx:33,
                 from ../../../include/bout.hxx:39:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Linking test-restart-io
  Compiling  test_region_iterator.cxx
  Compiling  sys/test_options_fields.cxx
In file included from ../../../include/field.hxx:41,
                 from ../../../include/field3d.hxx:30,
                 from ../../../include/difops.hxx:39,
                 from ../../../include/bout.hxx:41,
                 from test_region_iterator.cxx:1:
../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ios:41,
                 from /usr/include/c++/13/ostream:40,
                 from /usr/include/c++/13/iostream:41,
                 from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57,
                 from /usr/include/openmpi-x86_64/mpi.h:2887,
                 from ../../../include/boutcomm.hxx:33,
                 from ../../../include/bout.hxx:39:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
In file included from ../../include/bout/scorepwrapper.hxx:5,
                 from ../../include/bout/deriv_store.hxx:37,
                 from ../../include/bout/mesh.hxx:49,
                 from sys/test_options_fields.cxx:6:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55,
                 from sys/test_options_fields.cxx:4:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Linking test_region_iterator
  Compiling  test_naulin_laplace.cxx
In file included from ../../../include/field.hxx:41,
                 from ../../../include/field3d.hxx:30,
                 from ../../../include/difops.hxx:39,
                 from ../../../include/bout.hxx:41,
                 from test_naulin_laplace.cxx:26:
../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ios:41,
                 from /usr/include/c++/13/ostream:40,
                 from /usr/include/c++/13/iostream:41,
                 from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57,
                 from /usr/include/openmpi-x86_64/mpi.h:2887,
                 from ../../../include/boutcomm.hxx:33,
                 from ../../../include/bout.hxx:39:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  sys/test_options.cxx
In file included from ../../include/bout/scorepwrapper.hxx:5,
                 from ../../include/bout/deriv_store.hxx:37,
                 from ../../include/bout/mesh.hxx:49,
                 from ./test_extras.hxx:12,
                 from sys/test_options.cxx:2:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55,
                 from sys/test_options.cxx:1:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Linking test_naulin_laplace
  Compiling  test_multigrid_laplace.cxx
In file included from ../../../include/field.hxx:41,
                 from ../../../include/field3d.hxx:30,
                 from ../../../include/difops.hxx:39,
                 from ../../../include/bout.hxx:41,
                 from test_multigrid_laplace.cxx:26:
../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ios:41,
                 from /usr/include/c++/13/ostream:40,
                 from /usr/include/c++/13/iostream:41,
                 from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57,
                 from /usr/include/openmpi-x86_64/mpi.h:2887,
                 from ../../../include/boutcomm.hxx:33,
                 from ../../../include/bout.hxx:39:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Linking test_multigrid_laplace
  Compiling  test-laplacexy.cxx
In file included from ../../../include/field.hxx:41,
                 from ../../../include/field3d.hxx:30,
                 from ../../../include/difops.hxx:39,
                 from ../../../include/bout.hxx:41,
                 from test-laplacexy.cxx:26:
../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ios:41,
                 from /usr/include/c++/13/ostream:40,
                 from /usr/include/c++/13/iostream:41,
                 from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57,
                 from /usr/include/openmpi-x86_64/mpi.h:2887,
                 from ../../../include/boutcomm.hxx:33,
                 from ../../../include/bout.hxx:39:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Linking test-laplacexy-short
  Compiling  sys/test_msg_stack.cxx
  Compiling  test_laplace.cxx
In file included from sys/test_msg_stack.cxx:5:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55,
                 from sys/test_msg_stack.cxx:4:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
In file included from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:390:
sys/test_msg_stack.cxx: In member function 'virtual void MsgStackTest_SetPointTest_Test::TestBody()':
sys/test_msg_stack.cxx:77:33: warning: 'int MsgStack::setPoint()' is deprecated: Please use `MsgStack::push` with an empty message instead [-Wdeprecated-declarations]
   77 |     EXPECT_EQ(msg_stack.setPoint(), i);
      |               ~~~~~~~~~~~~~~~~~~^~
../../include/msg_stack.hxx:76:7: note: declared here
   76 |   int setPoint(); ///< get a message point
      |       ^~~~~~~~
In file included from ../../../include/field.hxx:41,
                 from ../../../include/field3d.hxx:30,
                 from ../../../include/difops.hxx:39,
                 from ../../../include/bout.hxx:41,
                 from test_laplace.cxx:6:
../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ios:41,
                 from /usr/include/c++/13/ostream:40,
                 from /usr/include/c++/13/iostream:41,
                 from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57,
                 from /usr/include/openmpi-x86_64/mpi.h:2887,
                 from ../../../include/boutcomm.hxx:33,
                 from ../../../include/bout.hxx:39:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
test_laplace.cxx: In function 'int main(int, char**)':
test_laplace.cxx:23:33: warning: 'const Field3D invert_laplace(const Field3D&, int, const Field2D*, const Field2D*, const Field2D*)' is deprecated [-Wdeprecated-declarations]
   23 |   Field3D flag0 = invert_laplace(input, 0);
      |                   ~~~~~~~~~~~~~~^~~~~~~~~~
In file included from ../../../include/bout_types.hxx:25,
                 from ../../../include/datafile.hxx:17,
                 from ../../../include/bout.hxx:40:
../../../include/invert_laplace.hxx:284:26: note: declared here
  284 | DEPRECATED(const Field3D invert_laplace(const Field3D &b, int flags, const Field2D *a = nullptr,
      |                          ^~~~~~~~~~~~~~
../../../include/bout/deprecated.hxx:18:55: note: in definition of macro 'DEPRECATED'
   18 | #define DEPRECATED(func) __attribute__ ((deprecated)) func
      |                                                       ^~~~
test_laplace.cxx:24:33: warning: 'const Field3D invert_laplace(const Field3D&, int, const Field2D*, const Field2D*, const Field2D*)' is deprecated [-Wdeprecated-declarations]
   24 |   Field3D flag3 = invert_laplace(input, 3);
      |                   ~~~~~~~~~~~~~~^~~~~~~~~~
../../../include/invert_laplace.hxx:284:26: note: declared here
  284 | DEPRECATED(const Field3D invert_laplace(const Field3D &b, int flags, const Field2D *a = nullptr,
      |                          ^~~~~~~~~~~~~~
../../../include/bout/deprecated.hxx:18:55: note: in definition of macro 'DEPRECATED'
   18 | #define DEPRECATED(func) __attribute__ ((deprecated)) func
      |                                                       ^~~~
test_laplace.cxx:27:34: warning: 'const Field3D invert_laplace(const Field3D&, int, const Field2D*, const Field2D*, const Field2D*)' is deprecated [-Wdeprecated-declarations]
   27 |   Field3D flag0a = invert_laplace(input, 0, &a);
      |                    ~~~~~~~~~~~~~~^~~~~~~~~~~~~~
../../../include/invert_laplace.hxx:284:26: note: declared here
  284 | DEPRECATED(const Field3D invert_laplace(const Field3D &b, int flags, const Field2D *a = nullptr,
      |                          ^~~~~~~~~~~~~~
../../../include/bout/deprecated.hxx:18:55: note: in definition of macro 'DEPRECATED'
   18 | #define DEPRECATED(func) __attribute__ ((deprecated)) func
      |                                                       ^~~~
test_laplace.cxx:28:34: warning: 'const Field3D invert_laplace(const Field3D&, int, const Field2D*, const Field2D*, const Field2D*)' is deprecated [-Wdeprecated-declarations]
   28 |   Field3D flag3a = invert_laplace(input, 3, &a);
      |                    ~~~~~~~~~~~~~~^~~~~~~~~~~~~~
../../../include/invert_laplace.hxx:284:26: note: declared here
  284 | DEPRECATED(const Field3D invert_laplace(const Field3D &b, int flags, const Field2D *a = nullptr,
      |                          ^~~~~~~~~~~~~~
../../../include/bout/deprecated.hxx:18:55: note: in definition of macro 'DEPRECATED'
   18 | #define DEPRECATED(func) __attribute__ ((deprecated)) func
      |                                                       ^~~~
test_laplace.cxx:31:35: warning: 'const Field3D invert_laplace(const Field3D&, int, const Field2D*, const Field2D*, const Field2D*)' is deprecated [-Wdeprecated-declarations]
   31 |   Field3D flag0ac = invert_laplace(input, 0, &a, &c);
      |                     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
../../../include/invert_laplace.hxx:284:26: note: declared here
  284 | DEPRECATED(const Field3D invert_laplace(const Field3D &b, int flags, const Field2D *a = nullptr,
      |                          ^~~~~~~~~~~~~~
../../../include/bout/deprecated.hxx:18:55: note: in definition of macro 'DEPRECATED'
   18 | #define DEPRECATED(func) __attribute__ ((deprecated)) func
      |                                                       ^~~~
test_laplace.cxx:32:35: warning: 'const Field3D invert_laplace(const Field3D&, int, const Field2D*, const Field2D*, const Field2D*)' is deprecated [-Wdeprecated-declarations]
   32 |   Field3D flag3ac = invert_laplace(input, 3, &a, &c);
      |                     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
../../../include/invert_laplace.hxx:284:26: note: declared here
  284 | DEPRECATED(const Field3D invert_laplace(const Field3D &b, int flags, const Field2D *a = nullptr,
      |                          ^~~~~~~~~~~~~~
../../../include/bout/deprecated.hxx:18:55: note: in definition of macro 'DEPRECATED'
   18 | #define DEPRECATED(func) __attribute__ ((deprecated)) func
      |                                                       ^~~~
test_laplace.cxx:35:35: warning: 'const Field3D invert_laplace(const Field3D&, int, const Field2D*, const Field2D*, const Field2D*)' is deprecated [-Wdeprecated-declarations]
   35 |   Field3D flag0ad = invert_laplace(input, 0, &a, nullptr, &d);
      |                     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../include/invert_laplace.hxx:284:26: note: declared here
  284 | DEPRECATED(const Field3D invert_laplace(const Field3D &b, int flags, const Field2D *a = nullptr,
      |                          ^~~~~~~~~~~~~~
../../../include/bout/deprecated.hxx:18:55: note: in definition of macro 'DEPRECATED'
   18 | #define DEPRECATED(func) __attribute__ ((deprecated)) func
      |                                                       ^~~~
test_laplace.cxx:36:35: warning: 'const Field3D invert_laplace(const Field3D&, int, const Field2D*, const Field2D*, const Field2D*)' is deprecated [-Wdeprecated-declarations]
   36 |   Field3D flag3ad = invert_laplace(input, 3, &a, nullptr, &d);
      |                     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../../include/invert_laplace.hxx:284:26: note: declared here
  284 | DEPRECATED(const Field3D invert_laplace(const Field3D &b, int flags, const Field2D *a = nullptr,
      |                          ^~~~~~~~~~~~~~
../../../include/bout/deprecated.hxx:18:55: note: in definition of macro 'DEPRECATED'
   18 | #define DEPRECATED(func) __attribute__ ((deprecated)) func
      |                                                       ^~~~
test_laplace.cxx:45:16: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations]
   45 |   lap->setFlags(4096);
      |   ~~~~~~~~~~~~~^~~~~~
In file included from test_laplace.cxx:7:
../../../include/invert_laplace.hxx:189:16: note: declared here
  189 |   virtual void setFlags(int f);
      |                ^~~~~~~~
test_laplace.cxx:47:16: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations]
   47 |   lap->setFlags(8192);
      |   ~~~~~~~~~~~~~^~~~~~
../../../include/invert_laplace.hxx:189:16: note: declared here
  189 |   virtual void setFlags(int f);
      |                ^~~~~~~~
test_laplace.cxx:52:16: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations]
   52 |   lap->setFlags(4096);
      |   ~~~~~~~~~~~~~^~~~~~
../../../include/invert_laplace.hxx:189:16: note: declared here
  189 |   virtual void setFlags(int f);
      |                ^~~~~~~~
test_laplace.cxx:54:16: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations]
   54 |   lap->setFlags(8192);
      |   ~~~~~~~~~~~~~^~~~~~
../../../include/invert_laplace.hxx:189:16: note: declared here
  189 |   virtual void setFlags(int f);
      |                ^~~~~~~~
test_laplace.cxx:59:16: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations]
   59 |   lap->setFlags(4096);
      |   ~~~~~~~~~~~~~^~~~~~
../../../include/invert_laplace.hxx:189:16: note: declared here
  189 |   virtual void setFlags(int f);
      |                ^~~~~~~~
test_laplace.cxx:61:16: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations]
   61 |   lap->setFlags(8192);
      |   ~~~~~~~~~~~~~^~~~~~
../../../include/invert_laplace.hxx:189:16: note: declared here
  189 |   virtual void setFlags(int f);
      |                ^~~~~~~~
test_laplace.cxx:67:16: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations]
   67 |   lap->setFlags(4096);
      |   ~~~~~~~~~~~~~^~~~~~
../../../include/invert_laplace.hxx:189:16: note: declared here
  189 |   virtual void setFlags(int f);
      |                ^~~~~~~~
test_laplace.cxx:69:16: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations]
   69 |   lap->setFlags(8192);
      |   ~~~~~~~~~~~~~^~~~~~
../../../include/invert_laplace.hxx:189:16: note: declared here
  189 |   virtual void setFlags(int f);
      |                ^~~~~~~~
  Linking test_laplace
  Compiling  sys/test_expressionparser.cxx
  Compiling  test_io_hdf5.cxx
In file included from ../../include/bout/scorepwrapper.hxx:5,
                 from ../../include/bout/deriv_store.hxx:37,
                 from ../../include/bout/mesh.hxx:49,
                 from ./test_extras.hxx:12,
                 from sys/test_expressionparser.cxx:6:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55,
                 from sys/test_expressionparser.cxx:1:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
In file included from ../../../include/field.hxx:41,
                 from ../../../include/field3d.hxx:30,
                 from ../../../include/difops.hxx:39,
                 from ../../../include/bout.hxx:41,
                 from test_io_hdf5.cxx:10:
../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ios:41,
                 from /usr/include/c++/13/ostream:40,
                 from /usr/include/c++/13/iostream:41,
                 from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57,
                 from /usr/include/openmpi-x86_64/mpi.h:2887,
                 from ../../../include/boutcomm.hxx:33,
                 from ../../../include/bout.hxx:39:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Linking test_io_hdf5
  Compiling  test_io.cxx
In file included from ../../../include/field.hxx:41,
                 from ../../../include/field3d.hxx:30,
                 from ../../../include/difops.hxx:39,
                 from ../../../include/bout.hxx:41,
                 from test_io.cxx:10:
../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ios:41,
                 from /usr/include/c++/13/ostream:40,
                 from /usr/include/c++/13/iostream:41,
                 from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57,
                 from /usr/include/openmpi-x86_64/mpi.h:2887,
                 from ../../../include/boutcomm.hxx:33,
                 from ../../../include/bout.hxx:39:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  sys/test_boutexception.cxx
In file included from ../../include/bout/scorepwrapper.hxx:5,
                 from ../../include/bout/deriv_store.hxx:37,
                 from ../../include/bout/mesh.hxx:49,
                 from ./test_extras.hxx:12,
                 from sys/test_boutexception.cxx:3:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55,
                 from sys/test_boutexception.cxx:1:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Linking test_io
  Compiling  src/test_bout++.cxx
In file included from ../../include/field.hxx:41,
                 from ../../include/field3d.hxx:30,
                 from ../../include/difops.hxx:39,
                 from ../../include/bout.hxx:41,
                 from src/test_bout++.cxx:3:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55,
                 from src/test_bout++.cxx:1:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  test_invpar.cxx
In file included from ../../../include/field.hxx:41,
                 from ../../../include/field3d.hxx:30,
                 from ../../../include/difops.hxx:39,
                 from ../../../include/bout.hxx:41,
                 from test_invpar.cxx:6:
../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ios:41,
                 from /usr/include/c++/13/ostream:40,
                 from /usr/include/c++/13/iostream:41,
                 from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57,
                 from /usr/include/openmpi-x86_64/mpi.h:2887,
                 from ../../../include/boutcomm.hxx:33,
                 from ../../../include/bout.hxx:39:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Linking test_invpar
  Compiling  solver/test_solverfactory.cxx
  Compiling  invertable_operator.cxx
In file included from ../../include/bout/scorepwrapper.hxx:5,
                 from ../../include/bout/deriv_store.hxx:37,
                 from ../../include/bout/mesh.hxx:49,
                 from ./test_extras.hxx:12,
                 from solver/test_solverfactory.cxx:4:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55,
                 from solver/test_solverfactory.cxx:1:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
In file included from ../../../include/field.hxx:41,
                 from ../../../include/fieldperp.hxx:31,
                 from ../../../include/invert_laplace.hxx:41,
                 from invertable_operator.cxx:1:
../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../../include/field.hxx:34:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Linking invertable_operator
  Compiling  solver/test_solver.cxx
In file included from ../../include/field.hxx:41,
                 from ../../include/field2d.hxx:34,
                 from solver/test_solver.cxx:4:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55,
                 from solver/test_solver.cxx:1:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  test_interpolate.cxx
In file included from ../../../include/field.hxx:41,
                 from ../../../include/field3d.hxx:30,
                 from ../../../include/difops.hxx:39,
                 from ../../../include/bout.hxx:41,
                 from test_interpolate.cxx:13:
../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ios:41,
                 from /usr/include/c++/13/ostream:40,
                 from /usr/include/c++/13/iostream:41,
                 from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57,
                 from /usr/include/openmpi-x86_64/mpi.h:2887,
                 from ../../../include/boutcomm.hxx:33,
                 from ../../../include/bout.hxx:39:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Linking test_interpolate
  Compiling  2fluid.cxx
In file included from ../../../include/field.hxx:41,
                 from ../../../include/field3d.hxx:30,
                 from ../../../include/difops.hxx:39,
                 from ../../../include/bout.hxx:41,
                 from 2fluid.cxx:6:
../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ios:41,
                 from /usr/include/c++/13/ostream:40,
                 from /usr/include/c++/13/iostream:41,
                 from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57,
                 from /usr/include/openmpi-x86_64/mpi.h:2887,
                 from ../../../include/boutcomm.hxx:33,
                 from ../../../include/bout.hxx:39:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Linking 2fluid
  Compiling  test_gyro.cxx
In file included from ../../../include/field.hxx:41,
                 from ../../../include/field3d.hxx:30,
                 from ../../../include/difops.hxx:39,
                 from ../../../include/bout.hxx:41,
                 from test_gyro.cxx:6:
../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ios:41,
                 from /usr/include/c++/13/ostream:40,
                 from /usr/include/c++/13/iostream:41,
                 from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57,
                 from /usr/include/openmpi-x86_64/mpi.h:2887,
                 from ../../../include/boutcomm.hxx:33,
                 from ../../../include/bout.hxx:39:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  solver/test_fakesolver.cxx
In file included from ../../include/utils.hxx:38,
                 from ../../include/options.hxx:45,
                 from ../../include/bout/solver.hxx:42,
                 from solver/test_fakesolver.hxx:6,
                 from solver/test_fakesolver.cxx:1:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55,
                 from solver/test_fakesolver.hxx:4:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Linking test_gyro
  Compiling  test_griddata.cxx
In file included from ../../../include/field.hxx:41,
                 from ../../../include/field3d.hxx:30,
                 from ../../../include/difops.hxx:39,
                 from ../../../include/bout.hxx:41,
                 from test_griddata.cxx:1:
../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ios:41,
                 from /usr/include/c++/13/ostream:40,
                 from /usr/include/c++/13/iostream:41,
                 from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57,
                 from /usr/include/openmpi-x86_64/mpi.h:2887,
                 from ../../../include/boutcomm.hxx:33,
                 from ../../../include/bout.hxx:39:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  mesh/test_paralleltransform.cxx
  Linking test_griddata
In file included from ../../include/bout/scorepwrapper.hxx:5,
                 from ../../include/bout/deriv_store.hxx:37,
                 from ../../include/bout/mesh.hxx:49,
                 from ./test_extras.hxx:12,
                 from mesh/test_paralleltransform.cxx:3:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55,
                 from mesh/test_paralleltransform.cxx:1:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  test_griddata.cxx
In file included from ../../../include/field.hxx:41,
                 from ../../../include/field3d.hxx:30,
                 from ../../../include/difops.hxx:39,
                 from ../../../include/bout.hxx:41,
                 from test_griddata.cxx:1:
../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ios:41,
                 from /usr/include/c++/13/ostream:40,
                 from /usr/include/c++/13/iostream:41,
                 from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57,
                 from /usr/include/openmpi-x86_64/mpi.h:2887,
                 from ../../../include/boutcomm.hxx:33,
                 from ../../../include/bout.hxx:39:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Linking test_griddata
  Compiling  test_fieldfactory.cxx
  Compiling  mesh/test_mesh.cxx
In file included from ../../../include/field.hxx:41,
                 from ../../../include/field3d.hxx:30,
                 from ../../../include/difops.hxx:39,
                 from ../../../include/bout.hxx:41,
                 from test_fieldfactory.cxx:8:
../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ios:41,
                 from /usr/include/c++/13/ostream:40,
                 from /usr/include/c++/13/iostream:41,
                 from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57,
                 from /usr/include/openmpi-x86_64/mpi.h:2887,
                 from ../../../include/boutcomm.hxx:33,
                 from ../../../include/bout.hxx:39:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
In file included from ../../include/bout/scorepwrapper.hxx:5,
                 from ../../include/bout/deriv_store.hxx:37,
                 from ../../include/bout/mesh.hxx:49,
                 from mesh/test_mesh.cxx:4:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55,
                 from mesh/test_mesh.cxx:1:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Linking test_fieldfactory
  Compiling  2fluid.cxx
In file included from ../../../include/field.hxx:41,
                 from ../../../include/field3d.hxx:30,
                 from ../../../include/difops.hxx:39,
                 from ../../../include/bout.hxx:41,
                 from 2fluid.cxx:6:
../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ios:41,
                 from /usr/include/c++/13/ostream:40,
                 from /usr/include/c++/13/iostream:41,
                 from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57,
                 from /usr/include/openmpi-x86_64/mpi.h:2887,
                 from ../../../include/boutcomm.hxx:33,
                 from ../../../include/bout.hxx:39:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  mesh/test_interpolation.cxx
  Linking 2fluid
In file included from ../../include/bout/scorepwrapper.hxx:5,
                 from ../../include/bout/deriv_store.hxx:37,
                 from ../../include/bout/mesh.hxx:49,
                 from mesh/test_interpolation.cxx:3:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55,
                 from mesh/test_interpolation.cxx:1:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  test_delp2.cxx
In file included from ../../../include/field.hxx:41,
                 from ../../../include/field3d.hxx:30,
                 from ../../../include/difops.hxx:39,
                 from ../../../include/bout.hxx:41,
                 from ../../../include/bout/physicsmodel.hxx:40,
                 from test_delp2.cxx:1:
../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ios:41,
                 from /usr/include/c++/13/ostream:40,
                 from /usr/include/c++/13/iostream:41,
                 from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57,
                 from /usr/include/openmpi-x86_64/mpi.h:2887,
                 from ../../../include/boutcomm.hxx:33,
                 from ../../../include/bout.hxx:39:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  mesh/test_coordinates.cxx
In file included from ../../include/field.hxx:41,
                 from ../../include/field3d.hxx:30,
                 from ../../include/bout/paralleltransform.hxx:10,
                 from ../../include/bout/coordinates.hxx:36,
                 from mesh/test_coordinates.cxx:3:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55,
                 from mesh/test_coordinates.cxx:1:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Linking test_delp2
  Compiling  test_cyclic.cxx
In file included from ../../../include/field.hxx:41,
                 from ../../../include/field3d.hxx:30,
                 from ../../../include/difops.hxx:39,
                 from ../../../include/bout.hxx:41,
                 from test_cyclic.cxx:6:
../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ios:41,
                 from /usr/include/c++/13/ostream:40,
                 from /usr/include/c++/13/iostream:41,
                 from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57,
                 from /usr/include/openmpi-x86_64/mpi.h:2887,
                 from ../../../include/boutcomm.hxx:33,
                 from ../../../include/bout.hxx:39:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  mesh/test_boutmesh.cxx
In file included from ../../include/bout/scorepwrapper.hxx:5,
                 from ../../include/bout/deriv_store.hxx:37,
                 from ../../include/bout/mesh.hxx:49,
                 from ../../include/../src/mesh/impls/bout/boutmesh.hxx:7,
                 from mesh/test_boutmesh.cxx:3:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55,
                 from mesh/test_boutmesh.cxx:1:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Linking test_cyclic
  Compiling  mesh/test_boundary_factory.cxx
  Compiling  test-coordinates-initialization.cxx
In file included from ../../include/field.hxx:41,
                 from ../../include/field2d.hxx:34,
                 from ../../include/boundary_op.hxx:9,
                 from ../../include/boundary_factory.hxx:7,
                 from mesh/test_boundary_factory.cxx:3:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55,
                 from mesh/test_boundary_factory.cxx:1:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
In file included from ../../../include/field.hxx:41,
                 from ../../../include/field3d.hxx:30,
                 from ../../../include/difops.hxx:39,
                 from ../../../include/bout.hxx:41,
                 from test-coordinates-initialization.cxx:5:
../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ios:41,
                 from /usr/include/c++/13/ostream:40,
                 from /usr/include/c++/13/iostream:41,
                 from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57,
                 from /usr/include/openmpi-x86_64/mpi.h:2887,
                 from ../../../include/boutcomm.hxx:33,
                 from ../../../include/bout.hxx:39:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Linking test-coordinates-initialization
  Compiling  command-args.cxx
In file included from /usr/include/c++/13/list:65,
                 from ../../include/utils.hxx:42,
                 from ../../include/field.hxx:44:
In member function 'std::__cxx11::_List_base<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >::_M_get_size() const',
    inlined from 'std::__cxx11::list<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >::_M_node_count() const' at /usr/include/c++/13/bits/stl_list.h:728:33,
    inlined from 'std::__cxx11::list<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >::size() const' at /usr/include/c++/13/bits/stl_list.h:1150:29,
    inlined from 'BoundaryFactoryTest_CreateTestBoundaryPositionalArguments_Test::TestBody()' at mesh/test_boundary_factory.cxx:81:3:
/usr/include/c++/13/bits/stl_list.h:480:59: warning: potential null pointer dereference [-Wnull-dereference]
  480 |       size_t _M_get_size() const { return _M_impl._M_node._M_size; }
      |                                                           ^~~~~~~
In member function 'std::__cxx11::list<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >::empty() const',
    inlined from 'BoundaryFactoryTest_CreateTestBoundaryKeywords_Test::TestBody()' at mesh/test_boundary_factory.cxx:93:3:
/usr/include/c++/13/bits/stl_list.h:1144:38: warning: potential null pointer dereference [-Wnull-dereference]
 1144 |       { return this->_M_impl._M_node._M_next == &this->_M_impl._M_node; }
      |                ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
In file included from ../../../include/field.hxx:41,
                 from ../../../include/field3d.hxx:30,
                 from ../../../include/difops.hxx:39,
                 from ../../../include/bout.hxx:41,
                 from command-args.cxx:2:
../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ios:41,
                 from /usr/include/c++/13/ostream:40,
                 from /usr/include/c++/13/iostream:41,
                 from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57,
                 from /usr/include/openmpi-x86_64/mpi.h:2887,
                 from ../../../include/boutcomm.hxx:33,
                 from ../../../include/bout.hxx:39:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  mesh/parallel/test_shiftedmetric.cxx
In file included from ../../include/bout/bout_enum_class.hxx:27,
                 from ../../include/fft.hxx:33,
                 from mesh/parallel/test_shiftedmetric.cxx:3:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55,
                 from mesh/parallel/test_shiftedmetric.cxx:1:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Linking command-args
  Compiling  test-bout-override-default-option.cxx
In file included from ../../../include/utils.hxx:38,
                 from ../../../include/options.hxx:45,
                 from test-bout-override-default-option.cxx:1:
../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/stdexcept:38,
                 from /usr/include/c++/13/system_error:43,
                 from /usr/include/c++/13/bits/ios_base.h:46,
                 from /usr/include/c++/13/streambuf:43,
                 from ../../../include/multiostream.hxx:4,
                 from ../../../include/output.hxx:32,
                 from ../../../include/options.hxx:44:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Linking test-bout-override-default-option
  Compiling  mesh/data/test_gridfromoptions.cxx
  Compiling  test_beuler.cxx
In file included from ../../include/utils.hxx:38,
                 from ../../include/options.hxx:45,
                 from mesh/data/test_gridfromoptions.cxx:3:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55,
                 from mesh/data/test_gridfromoptions.cxx:1:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
In file included from ../../../include/field.hxx:41,
                 from ../../../include/field3d.hxx:30,
                 from ../../../include/difops.hxx:39,
                 from ../../../include/bout.hxx:41,
                 from ../../../include/bout/physicsmodel.hxx:40,
                 from test_beuler.cxx:3:
../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ios:41,
                 from /usr/include/c++/13/istream:40,
                 from /usr/include/c++/13/sstream:40,
                 from /usr/include/c++/13/complex:45,
                 from /usr/include/openmpi-x86_64/petsc/petscsystypes.h:315,
                 from /usr/include/openmpi-x86_64/petsc/petscsys.h:47,
                 from /usr/include/openmpi-x86_64/petsc/petscbag.h:4,
                 from /usr/include/openmpi-x86_64/petsc/petsc.h:5,
                 from ../../../include/bout/petsclib.hxx:52,
                 from test_beuler.cxx:2:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Linking test_beuler
  Compiling  invert/test_fft.cxx
In file included from ../../include/bout/bout_enum_class.hxx:27,
                 from ../../include/fft.hxx:33,
                 from invert/test_fft.cxx:4:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55,
                 from invert/test_fft.cxx:1:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  include/test_mask.cxx
In file included from ../../include/bout/scorepwrapper.hxx:5,
                 from ../../include/bout/deriv_store.hxx:37,
                 from ../../include/bout/mesh.hxx:49,
                 from ../../include/mask.hxx:27,
                 from include/test_mask.cxx:3:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55,
                 from include/test_mask.cxx:1:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  include/test_interpolation_factory.cxx
In file included from ../../include/field.hxx:41,
                 from ../../include/field3d.hxx:30,
                 from ../../include/interpolation.hxx:31,
                 from include/test_interpolation_factory.cxx:3:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55,
                 from include/test_interpolation_factory.cxx:1:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  include/test_derivs.cxx
In file included from ../../include/bout/bout_enum_class.hxx:27,
                 from ../../include/fft.hxx:33,
                 from include/test_derivs.cxx:4:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55,
                 from include/test_derivs.cxx:1:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  include/test_cyclic_reduction.cxx
In file included from ../../include/utils.hxx:38,
                 from ../../include/cyclic_reduction.hxx:46,
                 from include/test_cyclic_reduction.cxx:4:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55,
                 from include/test_cyclic_reduction.cxx:1:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  include/bout/test_traits.cxx
  Compiling  include/bout/test_template_combinations.cxx
In file included from ../../include/field.hxx:41,
                 from include/bout/test_traits.cxx:3:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55,
                 from include/bout/test_traits.cxx:1:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  include/bout/test_region.cxx
In file included from ../../include/bout/scorepwrapper.hxx:5,
                 from ../../include/bout/deriv_store.hxx:37,
                 from ../../include/bout/mesh.hxx:49,
                 from include/bout/test_region.cxx:4:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55,
                 from include/bout/test_region.cxx:1:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  include/bout/test_monitor.cxx
In file included from ../../include/utils.hxx:38,
                 from ../../include/bout/monitor.hxx:6,
                 from include/bout/test_monitor.cxx:3:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55,
                 from include/bout/test_monitor.cxx:1:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  include/bout/test_macro_for_each.cxx
  Compiling  include/bout/test_generic_factory.cxx
  Compiling  include/bout/test_deriv_store.cxx
In file included from ../../include/bout/scorepwrapper.hxx:5,
                 from ../../include/bout/deriv_store.hxx:37,
                 from include/bout/test_deriv_store.cxx:3:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55,
                 from include/bout/test_deriv_store.cxx:1:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  include/bout/test_assert.cxx
  Compiling  include/bout/test_array.cxx
  Compiling  field/test_where.cxx
In file included from ../../include/field.hxx:41,
                 from field/test_where.cxx:3:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55,
                 from field/test_where.cxx:1:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  field/test_vector3d.cxx
In file included from ../../include/bout/scorepwrapper.hxx:5,
                 from ../../include/bout/deriv_store.hxx:37,
                 from ../../include/bout/mesh.hxx:49,
                 from field/test_vector3d.cxx:4:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55,
                 from field/test_vector3d.cxx:1:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  field/test_vector2d.cxx
In file included from ../../include/bout/scorepwrapper.hxx:5,
                 from ../../include/bout/deriv_store.hxx:37,
                 from ../../include/bout/mesh.hxx:49,
                 from field/test_vector2d.cxx:4:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55,
                 from field/test_vector2d.cxx:1:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  field/test_initialprofiles.cxx
In file included from ../../include/field.hxx:41,
                 from field/test_initialprofiles.cxx:4:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55,
                 from field/test_initialprofiles.cxx:1:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  field/test_fieldperp.cxx
  Compiling  field/test_fieldgroup.cxx
In file included from ../../include/bout/scorepwrapper.hxx:5,
                 from ../../include/bout/deriv_store.hxx:37,
                 from ../../include/bout/mesh.hxx:49,
                 from ./test_extras.hxx:12,
                 from field/test_fieldgroup.cxx:2:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55,
                 from field/test_fieldgroup.cxx:1:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  field/test_field_factory.cxx
In file included from ../../include/field.hxx:41,
                 from ../../include/field2d.hxx:34,
                 from field/test_field_factory.cxx:4:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55,
                 from field/test_field_factory.cxx:1:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Compiling  field/test_field3d.cxx
  Compiling  field/test_field2d.cxx
  Compiling  field/test_field.cxx
In file included from ../../include/bout/scorepwrapper.hxx:5,
                 from ../../include/bout/deriv_store.hxx:37,
                 from ../../include/bout/mesh.hxx:49,
                 from field/test_field.cxx:4:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55,
                 from field/test_field.cxx:1:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
field/test_field2d.cxx: In member function 'virtual void Field2DTest_IterateOverRGN_XGUARDS_Test::TestBody()':
field/test_field2d.cxx:538:19: warning: loop variable 'index' creates a copy from type 'const std::vector<int>' [-Wrange-loop-construct]
  538 |   for (const auto index : test_indices) {
      |                   ^~~~~
field/test_field2d.cxx:538:19: note: use reference type to prevent copying
  538 |   for (const auto index : test_indices) {
      |                   ^~~~~
      |                   &
field/test_field2d.cxx: In member function 'virtual void Field2DTest_IterateOverRGN_YGUARDS_Test::TestBody()':
field/test_field2d.cxx:581:19: warning: loop variable 'index' creates a copy from type 'const std::vector<int>' [-Wrange-loop-construct]
  581 |   for (const auto index : test_indices) {
      |                   ^~~~~
field/test_field2d.cxx:581:19: note: use reference type to prevent copying
  581 |   for (const auto index : test_indices) {
      |                   ^~~~~
      |                   &
field/test_field2d.cxx: In member function 'virtual void Field2DTest_IterateOverRGN_ZGUARDS_Test::TestBody()':
field/test_field2d.cxx:623:19: warning: loop variable 'index' creates a copy from type 'const std::vector<int>' [-Wrange-loop-construct]
  623 |   for (const auto index : test_indices) {
      |                   ^~~~~
field/test_field2d.cxx:623:19: note: use reference type to prevent copying
  623 |   for (const auto index : test_indices) {
      |                   ^~~~~
      |                   &
field/test_field2d.cxx: In member function 'virtual void Field2DTest_IterateOverRGN_NOCORNERS_Test::TestBody()':
field/test_field2d.cxx:668:19: warning: loop variable 'index' creates a copy from type 'const std::vector<int>' [-Wrange-loop-construct]
  668 |   for (const auto index : test_indices) {
      |                   ^~~~~
field/test_field2d.cxx:668:19: note: use reference type to prevent copying
  668 |   for (const auto index : test_indices) {
      |                   ^~~~~
      |                   &
  Compiling gtest-all.o
  Compiling gmock-all.o
  Compiling bout_test_main.o
In file included from ../../include/bout/bout_enum_class.hxx:27,
                 from ../../include/fft.hxx:33,
                 from bout_test_main.cxx:5:
../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()':
../../include/msg_stack.hxx:147:33: warning: 'bool std::uncaught_exception()' is deprecated: use 'std::uncaught_exceptions()' instead [-Wdeprecated-declarations]
  147 |     if (!std::uncaught_exception()) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~
In file included from /usr/include/c++/13/ext/concurrence.h:34,
                 from /usr/include/c++/13/bits/shared_ptr_base.h:62,
                 from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:55,
                 from bout_test_main.cxx:3:
/usr/include/c++/13/exception:122:8: note: declared here
  122 |   bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__));
      |        ^~~~~~~~~~~~~~~~~~
  Linking bout_test_main.a
  Linking tests
/usr/bin/ld: /tmp/ccSzwOGL.ltrans4.ltrans.o: in function `OutputTest::OutputTest() [clone .lto_priv.0]':
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/unit/sys/test_output.cxx:11: warning: the use of `tmpnam' is dangerous, better use `mkstemp'
+ SEGFAULT_SIGNALS=segv
+ make check
  Linking tests
/usr/bin/ld: /tmp/ccPPdD0G.ltrans4.ltrans.o: in function `OutputTest::OutputTest() [clone .lto_priv.0]':
/builddir/build/BUILD/BOUT++-v4.4.2/build_openmpi/tests/unit/sys/test_output.cxx:11: warning: the use of `tmpnam' is dangerous, better use `mkstemp'
Running unit test
Running main() from bout_test_main.cxx
[==========] Running 1529 tests from 103 test suites.
[----------] Global test environment set-up.
[----------] 2 tests from ParseCommandLineArgsDeathTest
[----------] 2 tests from ParseCommandLineArgsDeathTest (6 ms total)
[----------] 10 tests from FieldTest (1 ms total)
[----------] 78 tests from Field2DTest (517 ms total)
[----------] 126 tests from Field3DTest (23 ms total)
[----------] 47 tests from FieldFactoryCreationTest/0 (9 ms total)
[----------] 47 tests from FieldFactoryCreationTest/1 (9 ms total)
[----------] 28 tests from FieldFactoryTest (5 ms total)
[----------] 6 tests from FieldFactoryCreateAndTransformTest (1 ms total)
[----------] 28 tests from FieldGroupTest (0 ms total)
[----------] 101 tests from FieldPerpTest (16 ms total)
[----------] 10 tests from InitialProfileTest (2 ms total)
[ RUN      ] Vector2DTest.ApplyBoundaryString
	Option input:transform_from_field_aligned = 1 (default)
[----------] 46 tests from Vector2DTest (6 ms total)
[----------] 49 tests from Vector3DTest (6 ms total)
[----------] 10 tests from WhereTest (1 ms total)
[----------] 12 tests from ArrayTest (0 ms total)
[----------] 4 tests from AssertTest (0 ms total)
[----------] 25 tests from DerivativeStoreTest (6 ms total)
[----------] 6 tests from GenericFactory (0 ms total)
[----------] 3 tests from MacroForEachTest (0 ms total)
[----------] 3 tests from MacroForEachFnTest (0 ms total)
[----------] 2 tests from MonitorTest (0 ms total)
[----------] 33 tests from RegionTest (5 ms total)
[----------] 6 tests from RegionIndexConversionTest (0 ms total)
[----------] 2 tests from RegionIndex2DTest (0 ms total)
[----------] 2 tests from RegionIndex3DTest (0 ms total)
[----------] 21 tests from RegionIndexTest/0 (0 ms total)
[----------] 21 tests from RegionIndexTest/1 (0 ms total)
[----------] 21 tests from RegionIndexTest/2 (0 ms total)
[----------] 23 tests from FieldIndexTest/0 (0 ms total)
[----------] 23 tests from FieldIndexTest/1 (0 ms total)
[----------] 48 tests from IndexOffsetTest (1 ms total)
[----------] 5 tests from TemplateCombinationsTest (0 ms total)
[----------] 6 tests from BoutTraitsTest (0 ms total)
[----------] 3 tests from CyclicReduction (0 ms total)
[----------] 9 tests from InterpolationFactoryTest (1 ms total)
[----------] 11 tests from MaskTest (2 ms total)
[----------] 34 tests from GridFromOptionsTest (121 ms total)
[----------] 9 tests from ShiftedMetricTest (1 ms total)
[----------] 5 tests from BoundaryFactoryTest (0 ms total)
[----------] 2 tests from BoutMeshTest (4 ms total)
[----------] 4 tests from CoordinatesTest (1 ms total)
[----------] 16 tests from Field3DInterpToTest (0 ms total)
[----------] 8 tests from Field2DInterpToTest (0 ms total)
[----------] 25 tests from MeshTest (1 ms total)
[----------] 6 tests from ParallelTransformTest (1 ms total)
[----------] 50 tests from SolverTest (17 ms total)
[----------] 12 tests from SolverFactoryTest (0 ms total)
[----------] 20 tests from ParseCommandLineArgs (0 ms total)
[----------] 3 tests from PrintStartupTest (0 ms total)
[----------] 4 tests from BoutInitialiseFunctions (0 ms total)
[----------] 3 tests from BoutExceptionTest (2563 ms total)
[----------] 1 test from BoutRhsFailTest (0 ms total)
[----------] 2 tests from BoutParallelRhsFailTest (0 ms total)
[----------] 1 test from BoutIterationFailTest (0 ms total)
[----------] 29 tests from ExpressionParserTest (0 ms total)
[----------] 1 test from ParseExceptionTest (0 ms total)
[----------] 11 tests from MsgStackTest (0 ms total)
[----------] 99 tests from OptionsTest (17 ms total)
[----------] 12 tests from OptionsFieldTest (2 ms total)
[----------] 13 tests from OptionsNetCDFTest (17 ms total)
[----------] 20 tests from OptionsReaderTest (1 ms total)
[----------] 20 tests from OutputTest (0 ms total)
[----------] 25 tests from RangeTest (0 ms total)
[----------] 13 tests from TimerTest (23 ms total)
[----------] 6 tests from TypeNameTest (0 ms total)
[----------] 14 tests from MatrixTest (0 ms total)
[----------] 14 tests from TensorTest (0 ms total)
[----------] 4 tests from Invert3x3Test (0 ms total)
[----------] 13 tests from NumberUtilitiesTest (0 ms total)
[----------] 18 tests from StringUtilitiesTest (0 ms total)
[----------] 4 tests from FunctionTraitsTest (0 ms total)
[----------] 3 tests from VariantTest (0 ms total)
[----------] 5 tests from FirstX/DerivativesTest (1 ms total)
[----------] 5 tests from FirstY/DerivativesTest (1 ms total)
[----------] 6 tests from FirstZ/DerivativesTest (2 ms total)
[----------] 2 tests from SecondX/DerivativesTest (0 ms total)
[----------] 2 tests from SecondY/DerivativesTest (0 ms total)
[----------] 3 tests from SecondZ/DerivativesTest (0 ms total)
[----------] 1 test from FourthX/DerivativesTest (0 ms total)
[----------] 1 test from FourthY/DerivativesTest (0 ms total)
[----------] 1 test from FourthZ/DerivativesTest (0 ms total)
[----------] 6 tests from UpwindX/DerivativesTestAdvection (1 ms total)
[----------] 6 tests from UpwindY/DerivativesTestAdvection (1 ms total)
[----------] 6 tests from UpwindZ/DerivativesTestAdvection (1 ms total)
[----------] 5 tests from FluxX/DerivativesTestAdvection (1 ms total)
[----------] 5 tests from FluxY/DerivativesTestAdvection (1 ms total)
[----------] 5 tests from FluxZ/DerivativesTestAdvection (1 ms total)
[----------] 5 tests from X/FirstDerivativesInterfaceTest (1 ms total)
[----------] 5 tests from FirstY/FirstDerivativesInterfaceTest (1 ms total)
[----------] 6 tests from FirstZ/FirstDerivativesInterfaceTest (1 ms total)
[----------] 2 tests from X/SecondDerivativesInterfaceTest (0 ms total)
[----------] 2 tests from Y/SecondDerivativesInterfaceTest (0 ms total)
[----------] 3 tests from Z/SecondDerivativesInterfaceTest (0 ms total)
[----------] 1 test from X/FourthDerivativesInterfaceTest (0 ms total)
[----------] 1 test from Y/FourthDerivativesInterfaceTest (0 ms total)
[----------] 1 test from Z/FourthDerivativesInterfaceTest (0 ms total)
[----------] 6 tests from X/UpwindDerivativesInterfaceTest (1 ms total)
[----------] 6 tests from Y/UpwindDerivativesInterfaceTest (1 ms total)
[----------] 6 tests from Z/UpwindDerivativesInterfaceTest (1 ms total)
[----------] 5 tests from X/FluxDerivativesInterfaceTest (1 ms total)
[----------] 5 tests from Y/FluxDerivativesInterfaceTest (1 ms total)
[----------] 5 tests from Z/FluxDerivativesInterfaceTest (1 ms total)
[----------] 10 tests from FFTEvenAndOddSamples/FFTTest (0 ms total)
[==========] 1529 tests from 103 test suites ran. (3434 ms total)
[  PASSED  ] 1529 tests.
======= Making 56 integrated tests ========
test-yupdown                      ✓   0.009 s
test-vec                          ✓   0.009 s
test-twistshift                   ✓   0.008 s
test-twistshift-staggered         ✓   0.008 s
test-subdir                       ✓   0.896 s
test-stopCheck                    ✓   0.009 s
test-stopCheck-file               ✓   0.009 s
test-squash                       S -  all_tests => False
test-solver                       ✓   0.009 s
test-snb                          ✓   0.008 s
test-smooth                       ✓   0.009 s
test-slepc-solver                 S -  slepc => False
test-restarting                   ✓   0.008 s
test-restart-io_hdf5              ✓   0.009 s
test-restart-io                   ✓   0.008 s
test-region-iterator              ✓   0.009 s
test-petsc_laplace_MAST-grid      S -  all_tests => False
test-petsc_laplace                S -  all_tests => False
test-options-netcdf               S -  False => False
test-naulin-laplace               ✓   0.009 s
test-multigrid_laplace            ✓   0.009 s
test-laplacexy                    S -  all_tests => False
test-laplacexy-short              ✓   0.009 s
test-laplace                      ✓   0.009 s
test-io_hdf5                      ✓   0.009 s
test-io                           ✓   0.009 s
test-invpar                       ✓   0.009 s
test-invertable-operator          ✓   0.009 s
test-interpolate                  ✓   0.009 s
test-interchange-instability      ✓   0.009 s
test-initial                      S -  not make => False
test-include                      S -  all_tests => False
test-gyro                         ✓   0.009 s
test-griddata                     ✓   0.009 s
test-griddata-yboundary-guards    ✓   0.009 s
test-fieldgroupComm               S -  all_tests => False
test-fieldfactory                 ✓   0.010 s
test-drift-instability            S -  all_tests => False
test-drift-instability-staggered  ✓   0.010 s
test-delp2                        ✓   0.010 s
test-cyclic                       ✓   0.010 s
test-coordinates-initialization   ✓   0.010 s
test-compile-examples             S -  all_tests => False
test-compile-examples-petsc       S -  all_tests => False
test-command-args                 ✓   0.011 s
test-collect                      S -  all_tests => False
test-code-style                   S -  not make => False
test-boutcore/simple-model        S -  not make => False
test-boutcore/print               S -  not make => False
test-boutcore/mms-ddz             S -  not make => False
test-boutcore/legacy-model        S -  not make => False
test-boutcore/collect             S -  not make => False
test-boutcore/collect-staggered   S -  not make => False
test-bout-override-default-option ✓   0.010 s
test-beuler                       ✓   0.010 s
test-attribs                      S -  all_tests => False
======= All tests passed in 1.22 seconds =======
======= Running 56 integrated tests ========
test-yupdown                      ✓   1.963 s
test-vec                          ✓   2.376 s
test-twistshift                   ✓   1.928 s
test-twistshift-staggered         ✓   1.921 s
test-subdir                       ✓   2.824 s
test-stopCheck                    ✓   0.023 s
test-stopCheck-file               ✓   8.528 s
test-squash                       S -  all_tests => False
test-solver                       ✓  14.715 s
test-snb                          ✓   1.703 s
test-smooth                       ✓   7.874 s
test-slepc-solver                 S -  slepc => False
test-restarting                   ✓  10.559 s
test-restart-io_hdf5              ✓   5.764 s
test-restart-io                   ✓   7.634 s
test-region-iterator              ✓   3.945 s
test-petsc_laplace_MAST-grid      S -  all_tests => False
test-petsc_laplace                S -  all_tests => False
test-options-netcdf               S -  False => False
test-naulin-laplace               ✓   4.964 s
test-multigrid_laplace            ✓   6.449 s
test-laplacexy                    S -  all_tests => False
test-laplacexy-short              ✓  29.702 s
test-laplace                      ✓   7.946 s
test-io_hdf5                      ✓  42.583 s
test-io                           ✓  59.456 s
test-invpar                       ✓ 404.005 s
test-invertable-operator          ✓   4.225 s
test-interpolate                  ✓  22.859 s
test-interchange-instability      ✓  10.489 s
test-initial                      ✓  20.864 s
test-include                      S -  all_tests => False
test-gyro                         ✓   5.996 s
test-griddata                     ✓   1.960 s
test-griddata-yboundary-guards    ✓  15.528 s
test-fieldgroupComm               S -  all_tests => False
test-fieldfactory                 ✓   6.082 s
test-drift-instability            S -  all_tests => False
test-drift-instability-staggered  ✓  14.138 s
test-delp2                        ✓  29.716 s
test-cyclic                       ✓  22.432 s
test-coordinates-initialization   ✓   1.740 s
test-compile-examples             S -  all_tests => False
test-compile-examples-petsc       S -  all_tests => False
test-command-args                 ✓  23.408 s
test-collect                      S -  all_tests => False
test-code-style                   ✓   0.054 s
test-boutcore/simple-model        ✓   2.204 s
test-boutcore/print               ✓   1.770 s
test-boutcore/mms-ddz             ✓   1.786 s
test-boutcore/legacy-model        ✓   2.167 s
test-boutcore/collect             ✓   1.915 s
test-boutcore/collect-staggered   ✓   1.894 s
test-bout-override-default-option ✓   0.053 s
test-beuler                       ✓   1.637 s
test-attribs                      S -  all_tests => False
======= All tests passed in 819.81 seconds =======
======= Making 21 MMS tests ========
wave-1d           ✓   0.009 s
wave-1d-y         ✓   0.009 s
upwinding3        S -  not make => False
time              S -  all_tests => False
time-petsc        S -  not make => False
spatial/fci       ✓   0.012 s
spatial/diffusion S -  all_tests => False
spatial/d2dz2     S -  all_tests => False
spatial/d2dx2     S -  all_tests => False
spatial/advection S -  all_tests => False
laplace           S -  all_tests => False
hw                S -  all_tests => False
diffusion2        S -  all_tests => False
diffusion         ✓   0.010 s
derivatives3      S -  not make => False
bracket           S -  not make => False
advection         S -  all_tests => False
advection/weno3   S -  all_tests => False
advection/upwind  S -  all_tests => False
advection/central S -  all_tests => False
advection/arakawa S -  all_tests => False
======= All tests passed in 0.05 seconds =======
======= Running 21 MMS tests ========
wave-1d           ✓  12.532 s
wave-1d-y         ✓  13.052 s
upwinding3        ✓   2.895 s
time              S -  all_tests => False
time-petsc        S -  all_tests => False
spatial/fci       ✓  19.291 s
spatial/diffusion S -  all_tests => False
spatial/d2dz2     S -  all_tests => False
spatial/d2dx2     S -  all_tests => False
spatial/advection S -  all_tests => False
laplace           S -  all_tests => False
hw                S -  all_tests => False
diffusion2        S -  all_tests => False
diffusion         ✓  21.225 s
derivatives3      ✓   2.399 s
bracket           ✓   1.796 s
advection         S -  all_tests => False
advection/weno3   S -  all_tests => False
advection/upwind  S -  all_tests => False
advection/central S -  all_tests => False
advection/arakawa S -  all_tests => False
======= All tests passed in 73.20 seconds =======
+ popd
~/build/BUILD/BOUT++-v4.4.2
+ '[' openmpi = mpich ']'
+ . /etc/profile.d/modules.sh
++ '[' -n /bin/sh ']'
++ '[' sh = sh ']'
++ shell=sh
++ '[' -f /usr/share/Modules/init/sh ']'
++ . /usr/share/Modules/init/sh
+++ unset _mlshdbg
+++ '[' 0 = 1 ']'
+++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD'
+++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD'
+++ unset _mlre _mlIFS
+++ '[' -n x ']'
+++ _mlIFS=' 	
'
+++ IFS=' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
++++ eval 'echo ${LD_LIBRARY_PATH+x}'
+++++ echo x
+++ '[' -n x ']'
++++ eval 'echo ${LD_LIBRARY_PATH}'
+++++ echo /usr/lib64/openmpi/lib
+++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' '
+++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH
++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}'
+++++ echo
+++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
++++ eval 'echo ${LD_PRELOAD+x}'
+++++ echo
+++ '[' -n '' ']'
+++ _mlrv=MODULES_RUNENV_LD_PRELOAD
++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}'
+++++ echo
+++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' '
+++ '[' -n '__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']'
+++ _mlre='eval __MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 '
++++ eval '__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\''' 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++++ __MODULES_QUAR_LD_LIBRARY_PATH=/usr/lib64/openmpi/lib
+++++ LD_LIBRARY_PATH=
+++++ LD_PRELOAD=
+++++ __MODULES_QUARANTINE_SET=1
+++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++ _mlcode='_module_raw() {
   eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")";
   _mlstatus=$?;
   return $_mlstatus;
};
module() {
   local _mlredir=0;
   if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then
      if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then
         _mlredir=0;
      elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then
         _mlredir=1;
      fi;
   fi;
   case " $@ " in
      *'\'' --no-redirect '\''*) _mlredir=0 ;;
      *'\'' --redirect '\''*) _mlredir=1 ;;
   esac;
   if [ $_mlredir -eq 0 ]; then
      _module_raw "$@";
   else
      _module_raw "$@" 2>&1;
   fi;
};
ml() { module ml "$@"; };
MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD;
unset __MODULES_AUTOINIT_INPROGRESS;
MODULESHOME=/usr/share/Modules; export MODULESHOME;
test 0;'
+++ _mlret=0
+++ '[' -n x ']'
+++ IFS=' 	
'
+++ unset _mlIFS
+++ unset _mlre _mlv _mlrv
+++ '[' 0 -eq 0 ']'
+++ eval '_module_raw() {
   eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")";
   _mlstatus=$?;
   return $_mlstatus;
};
module() {
   local _mlredir=0;
   if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then
      if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then
         _mlredir=0;
      elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then
         _mlredir=1;
      fi;
   fi;
   case " $@ " in
      *'\'' --no-redirect '\''*) _mlredir=0 ;;
      *'\'' --redirect '\''*) _mlredir=1 ;;
   esac;
   if [ $_mlredir -eq 0 ]; then
      _module_raw "$@";
   else
      _module_raw "$@" 2>&1;
   fi;
};
ml() { module ml "$@"; };
MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD;
unset __MODULES_AUTOINIT_INPROGRESS;
MODULESHOME=/usr/share/Modules; export MODULESHOME;
test 0;'
++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl
++++ export MODULES_CMD
++++ unset __MODULES_AUTOINIT_INPROGRESS
++++ MODULESHOME=/usr/share/Modules
++++ export MODULESHOME
++++ test 0
+++ '[' /bin/sh '!=' '' ']'
+++ export -f _module_raw
+++ export -f module
++++ type -t ml
+++ '[' function = function ']'
+++ export -f ml
+++ unset _mlcode _mlret
+++ '[' -n '' ']'
+ module unload mpi/openmpi-x86_64
+ local _mlredir=0
+ '[' -n '' ']'
+ case " $@ " in
+ '[' 0 -eq 0 ']'
+ _module_raw unload mpi/openmpi-x86_64
++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh unload mpi/openmpi-x86_64
+ eval 'unset MPI_COMPILER;
unset LD_LIBRARY_PATH;
MANPATH=/usr/share/man:; export MANPATH;
unset MPI_INCLUDE;
unset MPI_MAN;
unset _LMFILES_;
unset LOADEDMODULES;
PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH;
unset MPI_PYTHON3_SITEARCH;
unset MPI_HOME;
unset MPI_FORTRAN_MOD_DIR;
unset __MODULES_LMALTNAME;
unset __MODULES_LMCONFLICT;
__MODULES_SHARE_MANPATH=:1; export __MODULES_SHARE_MANPATH;
unset MPI_SUFFIX;
unset MPI_SYSCONFIG;
__MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH;
unset MPI_LIB;
PATH=/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH;
unset MPI_BIN;
test 0;'
++ unset MPI_COMPILER
Processing files: bout++-mpich-4.4.2-6.fc38.x86_64
++ unset LD_LIBRARY_PATH
++ MANPATH=/usr/share/man:
++ export MANPATH
++ unset MPI_INCLUDE
++ unset MPI_MAN
++ unset _LMFILES_
++ unset LOADEDMODULES
++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig
++ export PKG_CONFIG_PATH
++ unset MPI_PYTHON3_SITEARCH
++ unset MPI_HOME
++ unset MPI_FORTRAN_MOD_DIR
++ unset __MODULES_LMALTNAME
++ unset __MODULES_LMCONFLICT
++ __MODULES_SHARE_MANPATH=:1
++ export __MODULES_SHARE_MANPATH
++ unset MPI_SUFFIX
++ unset MPI_SYSCONFIG
++ __MODULES_SHARE_PKG_CONFIG_PATH=:1
++ export __MODULES_SHARE_PKG_CONFIG_PATH
++ unset MPI_LIB
++ PATH=/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin
++ export PATH
++ unset MPI_BIN
++ test 0
+ _mlstatus=0
+ return 0
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.X8BJIz
+ umask 022
+ cd /builddir/build/BUILD
+ cd BOUT++-v4.4.2
+ DOCDIR=/builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64/usr/share/doc/bout++-mpich
+ export LC_ALL=C
+ LC_ALL=C
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64/usr/share/doc/bout++-mpich
+ cp -pr README.md /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64/usr/share/doc/bout++-mpich
+ cp -pr CITATION.bib /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64/usr/share/doc/bout++-mpich
+ cp -pr CITATION.cff /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64/usr/share/doc/bout++-mpich
+ cp -pr CHANGELOG.md /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64/usr/share/doc/bout++-mpich
+ cp -pr CONTRIBUTING.md /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64/usr/share/doc/bout++-mpich
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.P8IMlm
+ umask 022
+ cd /builddir/build/BUILD
+ cd BOUT++-v4.4.2
+ LICENSEDIR=/builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64/usr/share/licenses/bout++-mpich
+ export LC_ALL=C
+ LC_ALL=C
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64/usr/share/licenses/bout++-mpich
+ cp -pr LICENSE /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64/usr/share/licenses/bout++-mpich
+ cp -pr LICENSE.GPL /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64/usr/share/licenses/bout++-mpich
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: bout++-mpich = 4.4.2-6.fc38 bout++-mpich(x86-64) = 4.4.2-6.fc38 bundled(libpvode) libbout++.so.4.4.0()(64bit)(mpich-x86_64) libpvode.so.1.0.0()(64bit)(mpich-x86_64) libpvpre.so.1.0.0()(64bit)(mpich-x86_64)
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: /usr/bin/sh libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.4)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libgcc_s.so.1(GCC_4.0.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libmpi.so.12()(64bit)(mpich-x86_64) libmpicxx.so.12()(64bit)(mpich-x86_64) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.5)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.19)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) rtld(GNU_HASH)
Recommends: environment-modules python3-boutdata python3-boututils python3-xbout
Processing files: bout++-mpich-devel-4.4.2-6.fc38.x86_64
Provides: bout++-mpich-devel = 4.4.2-6.fc38 bout++-mpich-devel(x86-64) = 4.4.2-6.fc38
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: fftw-devel flexiblas-devel gcc-c++ gettext-devel hdf5-devel hdf5-mpich-devel make mpark-variant-devel mpich-devel netcdf-cxx4-devel netcdf-devel petsc-mpich-devel sundials-devel sundials-mpich-devel zlib-devel
Processing files: python3-bout++-mpich-4.4.2-6.fc38.x86_64
Provides: python-bout++-mpich = 4.4.2-6.fc38 python3-bout++-mpich = 4.4.2-6.fc38 python3-bout++-mpich(x86-64) = 4.4.2-6.fc38 python3.11-bout++-mpich = 4.4.2-6.fc38
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: libbout++.so.4.4.0()(64bit)(mpich-x86_64) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.4)(64bit) libfftw3.so.3()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libnetcdf.so.19()(64bit) libnetcdf_c++4.so.1()(64bit) libpetsc.so.3.17()(64bit)(mpich-x86_64) libpvode.so.1.0.0()(64bit)(mpich-x86_64) libpvpre.so.1.0.0()(64bit)(mpich-x86_64) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libsundials_arkode.so.4()(64bit)(mpich-x86_64) libsundials_cvode.so.5()(64bit)(mpich-x86_64) libsundials_ida.so.5()(64bit)(mpich-x86_64) libsundials_nvecparallel.so.5()(64bit)(mpich-x86_64) python(abi) = 3.11 rtld(GNU_HASH)
Recommends: python3-xbout
Processing files: bout++-openmpi-4.4.2-6.fc38.x86_64
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.TAXYd1
+ umask 022
+ cd /builddir/build/BUILD
+ cd BOUT++-v4.4.2
+ DOCDIR=/builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64/usr/share/doc/bout++-openmpi
+ export LC_ALL=C
+ LC_ALL=C
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64/usr/share/doc/bout++-openmpi
+ cp -pr README.md /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64/usr/share/doc/bout++-openmpi
+ cp -pr CITATION.bib /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64/usr/share/doc/bout++-openmpi
+ cp -pr CITATION.cff /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64/usr/share/doc/bout++-openmpi
+ cp -pr CHANGELOG.md /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64/usr/share/doc/bout++-openmpi
+ cp -pr CONTRIBUTING.md /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64/usr/share/doc/bout++-openmpi
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.uKZCz1
+ umask 022
+ cd /builddir/build/BUILD
+ cd BOUT++-v4.4.2
+ LICENSEDIR=/builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64/usr/share/licenses/bout++-openmpi
+ export LC_ALL=C
+ LC_ALL=C
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64/usr/share/licenses/bout++-openmpi
+ cp -pr LICENSE /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64/usr/share/licenses/bout++-openmpi
+ cp -pr LICENSE.GPL /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64/usr/share/licenses/bout++-openmpi
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: bout++-openmpi = 4.4.2-6.fc38 bout++-openmpi(x86-64) = 4.4.2-6.fc38 bundled(libpvode) libbout++.so.4.4.0()(64bit)(openmpi-x86_64) libpvode.so.1.0.0()(64bit)(openmpi-x86_64) libpvpre.so.1.0.0()(64bit)(openmpi-x86_64)
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: /usr/bin/sh libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.4)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libgcc_s.so.1(GCC_4.0.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libmpi.so.40()(64bit)(openmpi-x86_64) libmpi_cxx.so.40()(64bit)(openmpi-x86_64) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.5)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.19)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) rtld(GNU_HASH)
Recommends: environment-modules python3-boutdata python3-boututils python3-xbout
Processing files: bout++-openmpi-devel-4.4.2-6.fc38.x86_64
Provides: bout++-openmpi-devel = 4.4.2-6.fc38 bout++-openmpi-devel(x86-64) = 4.4.2-6.fc38
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: fftw-devel flexiblas-devel gcc-c++ gettext-devel hdf5-devel hdf5-openmpi-devel make mpark-variant-devel netcdf-cxx4-devel netcdf-devel openmpi-devel petsc-openmpi-devel sundials-devel sundials-openmpi-devel zlib-devel
Processing files: python3-bout++-openmpi-4.4.2-6.fc38.x86_64
Provides: python-bout++-openmpi = 4.4.2-6.fc38 python3-bout++-openmpi = 4.4.2-6.fc38 python3-bout++-openmpi(x86-64) = 4.4.2-6.fc38 python3.11-bout++-openmpi = 4.4.2-6.fc38
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: libbout++.so.4.4.0()(64bit)(openmpi-x86_64) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.4)(64bit) libfftw3.so.3()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libmpi.so.40()(64bit)(openmpi-x86_64) libmpi_cxx.so.40()(64bit)(openmpi-x86_64) libnetcdf.so.19()(64bit) libnetcdf_c++4.so.1()(64bit) libpetsc.so.3.17()(64bit)(openmpi-x86_64) libpvode.so.1.0.0()(64bit)(openmpi-x86_64) libpvpre.so.1.0.0()(64bit)(openmpi-x86_64) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libsundials_arkode.so.4()(64bit)(openmpi-x86_64) libsundials_cvode.so.5()(64bit)(openmpi-x86_64) libsundials_ida.so.5()(64bit)(openmpi-x86_64) libsundials_nvecparallel.so.5()(64bit)(openmpi-x86_64) python(abi) = 3.11 rtld(GNU_HASH)
Recommends: python3-xbout
Processing files: bout++-common-4.4.2-6.fc38.x86_64
Provides: bout++-common = 4.4.2-6.fc38 bout++-common(x86-64) = 4.4.2-6.fc38
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: python3-bout++-4.4.2-6.fc38.noarch
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.GwsWBg
+ umask 022
+ cd /builddir/build/BUILD
+ cd BOUT++-v4.4.2
+ DOCDIR=/builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64/usr/share/doc/python3-bout++
+ export LC_ALL=C
+ LC_ALL=C
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64/usr/share/doc/python3-bout++
+ cp -pr README.md /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64/usr/share/doc/python3-bout++
+ cp -pr CITATION.bib /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64/usr/share/doc/python3-bout++
+ cp -pr CITATION.cff /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64/usr/share/doc/python3-bout++
+ cp -pr CHANGELOG.md /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64/usr/share/doc/python3-bout++
+ cp -pr CONTRIBUTING.md /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64/usr/share/doc/python3-bout++
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.syc6ei
+ umask 022
+ cd /builddir/build/BUILD
+ cd BOUT++-v4.4.2
+ LICENSEDIR=/builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64/usr/share/licenses/python3-bout++
+ export LC_ALL=C
+ LC_ALL=C
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64/usr/share/licenses/python3-bout++
+ cp -pr LICENSE /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64/usr/share/licenses/python3-bout++
+ cp -pr LICENSE.GPL /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64/usr/share/licenses/python3-bout++
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: python-bout++ = 4.4.2-6.fc38 python-bout_runners = 4.4.2-6.fc38 python-zoidberg = 4.4.2-6.fc38 python3-bout++ = 4.4.2-6.fc38 python3-bout_runners = 4.4.2-6.fc38 python3-zoidberg = 4.4.2-6.fc38 python3.11-bout++ = 4.4.2-6.fc38 python3.11-bout_runners = 4.4.2-6.fc38 python3.11-zoidberg = 4.4.2-6.fc38
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: python(abi) = 3.11
Recommends: python3-boutdata python3-boututils python3-matplotlib python3-scipy
Processing files: bout++-doc-4.4.2-6.fc38.noarch
Provides: bout++-doc = 4.4.2-6.fc38
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: bout++-debugsource-4.4.2-6.fc38.x86_64
Provides: bout++-debugsource = 4.4.2-6.fc38 bout++-debugsource(x86-64) = 4.4.2-6.fc38
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: bout++-debuginfo-4.4.2-6.fc38.x86_64
Provides: bout++-debuginfo = 4.4.2-6.fc38 bout++-debuginfo(x86-64) = 4.4.2-6.fc38
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: bout++-debugsource(x86-64) = 4.4.2-6.fc38
Processing files: bout++-mpich-debuginfo-4.4.2-6.fc38.x86_64
Provides: bout++-mpich-debuginfo = 4.4.2-6.fc38 bout++-mpich-debuginfo(x86-64) = 4.4.2-6.fc38 debuginfo(build-id) = 1fc033309abaa4f1ba58fc8a23064efa591ba589 debuginfo(build-id) = 762fbcce613e1fe505a53ac2dde301629dc40087 debuginfo(build-id) = e032cf3aafb172de7b4d8c209aefb05c4c2d8c97
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: bout++-debugsource(x86-64) = 4.4.2-6.fc38
Processing files: python3-bout++-mpich-debuginfo-4.4.2-6.fc38.x86_64
Provides: debuginfo(build-id) = effeebeece904681341f4eeedf01cb264581e307 python-bout++-mpich-debuginfo = 4.4.2-6.fc38 python3-bout++-mpich-debuginfo = 4.4.2-6.fc38 python3-bout++-mpich-debuginfo(x86-64) = 4.4.2-6.fc38 python3.11-bout++-mpich-debuginfo = 4.4.2-6.fc38
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: bout++-debugsource(x86-64) = 4.4.2-6.fc38
Processing files: bout++-openmpi-debuginfo-4.4.2-6.fc38.x86_64
Provides: bout++-openmpi-debuginfo = 4.4.2-6.fc38 bout++-openmpi-debuginfo(x86-64) = 4.4.2-6.fc38 debuginfo(build-id) = 0de0bd0e85eaa2b59e286578e1939985aac890fa debuginfo(build-id) = 1d0352987f350e6d30019338ed99c0a9aa4be1d6 debuginfo(build-id) = 80ece986542f68659b3b31aad7c51dd063e428c2
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: bout++-debugsource(x86-64) = 4.4.2-6.fc38
Processing files: python3-bout++-openmpi-debuginfo-4.4.2-6.fc38.x86_64
Provides: debuginfo(build-id) = 7da9cba4b4f31e9fc21562ccfc426f542526c8ce python-bout++-openmpi-debuginfo = 4.4.2-6.fc38 python3-bout++-openmpi-debuginfo = 4.4.2-6.fc38 python3-bout++-openmpi-debuginfo(x86-64) = 4.4.2-6.fc38 python3.11-bout++-openmpi-debuginfo = 4.4.2-6.fc38
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: bout++-debugsource(x86-64) = 4.4.2-6.fc38
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64
Wrote: /builddir/build/RPMS/bout++-openmpi-debuginfo-4.4.2-6.fc38.x86_64.rpm
Wrote: /builddir/build/RPMS/bout++-mpich-debuginfo-4.4.2-6.fc38.x86_64.rpm
Wrote: /builddir/build/RPMS/bout++-debugsource-4.4.2-6.fc38.x86_64.rpm
Wrote: /builddir/build/RPMS/bout++-doc-4.4.2-6.fc38.noarch.rpm
Wrote: /builddir/build/RPMS/python3-bout++-openmpi-debuginfo-4.4.2-6.fc38.x86_64.rpm
Wrote: /builddir/build/RPMS/bout++-debuginfo-4.4.2-6.fc38.x86_64.rpm
Wrote: /builddir/build/RPMS/bout++-openmpi-4.4.2-6.fc38.x86_64.rpm
Wrote: /builddir/build/RPMS/python3-bout++-mpich-debuginfo-4.4.2-6.fc38.x86_64.rpm
Wrote: /builddir/build/RPMS/python3-bout++-4.4.2-6.fc38.noarch.rpm
Wrote: /builddir/build/RPMS/bout++-openmpi-devel-4.4.2-6.fc38.x86_64.rpm
Wrote: /builddir/build/RPMS/bout++-mpich-4.4.2-6.fc38.x86_64.rpm
Wrote: /builddir/build/RPMS/bout++-mpich-devel-4.4.2-6.fc38.x86_64.rpm
Wrote: /builddir/build/RPMS/python3-bout++-openmpi-4.4.2-6.fc38.x86_64.rpm
Wrote: /builddir/build/RPMS/bout++-common-4.4.2-6.fc38.x86_64.rpm
Wrote: /builddir/build/RPMS/python3-bout++-mpich-4.4.2-6.fc38.x86_64.rpm
Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.Ew7H5c
+ umask 022
+ cd /builddir/build/BUILD
+ cd BOUT++-v4.4.2
+ /usr/bin/rm -rf /builddir/build/BUILDROOT/bout++-4.4.2-6.fc38.x86_64
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.UriE8R
+ umask 022
+ cd /builddir/build/BUILD
+ rm -rf BOUT++-v4.4.2 BOUT++-v4.4.2.gemspec
+ RPM_EC=0
++ jobs -p
+ exit 0
Child return code was: 0