Warning: Permanently added '52.23.207.4' (ED25519) to the list of known hosts.
Running: /usr/bin/copr-rpmbuild --verbose --drop-resultdir --build-id 5270152 --chroot fedora-rawhide-x86_64 --detached
Version: 0.62
PID: 6396
Logging PID: 6397
Task:
{'appstream': True,
 'background': True,
 'build_id': 5270152,
 'buildroot_pkgs': [],
 'chroot': 'fedora-rawhide-x86_64',
 'enable_net': False,
 'fedora_review': False,
 'git_hash': '4c1cdb59b67848abaf60132517ff8c22b54a969a',
 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/thrnciar/python-packaging-control/pymol',
 'isolation': 'default',
 'memory_reqs': 2048,
 'package_name': 'pymol',
 'package_version': '2.5.0-6',
 'project_dirname': 'python-packaging-control',
 'project_name': 'python-packaging-control',
 'project_owner': 'thrnciar',
 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/thrnciar/python-packaging-control/fedora-rawhide-x86_64/',
            'id': 'copr_base',
            'name': 'Copr repository'}],
 'sandbox': 'thrnciar/python-packaging-control--thrnciar',
 'source_json': {},
 'source_type': None,
 'submitter': 'thrnciar',
 'tags': [],
 'task_id': '5270152-fedora-rawhide-x86_64',
 'timeout': 18000,
 'uses_devel_repo': False,
 'with_opts': [],
 'without_opts': []}

Running: git clone https://copr-dist-git.fedorainfracloud.org/git/thrnciar/python-packaging-control/pymol /var/lib/copr-rpmbuild/workspace/workdir-6km37st1/pymol --depth 500 --no-single-branch --recursive

cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/thrnciar/python-packaging-control/pymol', '/var/lib/copr-rpmbuild/workspace/workdir-6km37st1/pymol', '--depth', '500', '--no-single-branch', '--recursive']
cwd: .
rc: 0
stdout: 
stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-6km37st1/pymol'...

Running: git checkout 4c1cdb59b67848abaf60132517ff8c22b54a969a

cmd: ['git', 'checkout', '4c1cdb59b67848abaf60132517ff8c22b54a969a']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-6km37st1/pymol
rc: 0
stdout: 
stderr: Note: switching to '4c1cdb59b67848abaf60132517ff8c22b54a969a'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by switching back to a branch.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -c with the switch command. Example:

  git switch -c <new-branch-name>

Or undo this operation with:

  git switch -

Turn off this advice by setting config variable advice.detachedHead to false

HEAD is now at 4c1cdb5 automatic import of pymol

Running: copr-distgit-client sources

/usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated
cmd: ['copr-distgit-client', 'sources']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-6km37st1/pymol
rc: 0
stdout: 
stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD
INFO: Reading stdout from command: git rev-parse HEAD
INFO: Reading sources specification file: sources
INFO: Downloading pymol-open-source-2.5.0.tar.gz
INFO: Calling: curl -H Pragma: -o pymol-open-source-2.5.0.tar.gz --location --remote-time --show-error --fail https://copr-dist-git.fedorainfracloud.org/repo/pkgs/thrnciar/python-packaging-control/pymol/pymol-open-source-2.5.0.tar.gz/md5/1c2d43789dd5580958fd75672ecfd8e7/pymol-open-source-2.5.0.tar.gz
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
100  9.9M  100  9.9M    0     0  3980k      0  0:00:02  0:00:02 --:--:-- 3981k
INFO: Reading stdout from command: md5sum pymol-open-source-2.5.0.tar.gz
INFO: Downloading pymol.png
INFO: Calling: curl -H Pragma: -o pymol.png --location --remote-time --show-error --fail https://copr-dist-git.fedorainfracloud.org/repo/pkgs/thrnciar/python-packaging-control/pymol/pymol.png/md5/3bbd85dbd40f588f505ad988b6df2933/pymol.png
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
100 19466  100 19466    0     0   127k      0 --:--:-- --:--:-- --:--:--  126k
INFO: Reading stdout from command: md5sum pymol.png

Running (timeout=18000): unbuffer mock --buildsrpm --spec /var/lib/copr-rpmbuild/workspace/workdir-6km37st1/pymol/pymol.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-6km37st1/pymol --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1674292270.246865 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
INFO: mock.py version 3.5 starting (python version = 3.11.0, NVR = mock-3.5-1.fc37)...
Start(bootstrap): init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish(bootstrap): init plugins
Start: init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish: init plugins
INFO: Signal handler active
Start: run
INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-6km37st1/pymol/pymol.spec)  Config(fedora-rawhide-x86_64)
Start: clean chroot
Finish: clean chroot
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1674292270.246865/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
INFO: enabled HW Info plugin
Mock Version: 3.5
INFO: Mock Version: 3.5
Start(bootstrap): dnf install
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Updating Subscription Management repositories.
Unable to read consumer identity

This system is not registered with an entitlement server. You can use subscription-manager to register.

Copr repository                                  95 MB/s |  10 MB     00:00    
fedora                                           44 MB/s |  65 MB     00:01    
Last metadata expiration check: 0:00:02 ago on Sat Jan 21 09:11:16 2023.
Dependencies resolved.
================================================================================
 Package                      Arch   Version                    Repo       Size
================================================================================
Installing:
 dnf                          noarch 4.14.0-2.fc38              copr_base 467 k
 dnf-plugins-core             noarch 4.3.1-2.fc38               copr_base  34 k
Installing dependencies:
 alternatives                 x86_64 1.21-1.fc38                fedora     38 k
 audit-libs                   x86_64 3.0.9-3.fc38               copr_base 117 k
 basesystem                   noarch 11-14.fc37                 fedora    7.0 k
 bash                         x86_64 5.2.15-1.fc38              fedora    1.8 M
 bzip2-libs                   x86_64 1.0.8-12.fc37              fedora     41 k
 ca-certificates              noarch 2022.2.54-5.fc37           fedora    829 k
 coreutils                    x86_64 9.1-10.fc38                fedora    1.1 M
 coreutils-common             x86_64 9.1-10.fc38                fedora    2.0 M
 crypto-policies              noarch 20221215-2.gita4c31a3.fc38 copr_base  64 k
 curl                         x86_64 7.87.0-3.fc38              copr_base 347 k
 cyrus-sasl-lib               x86_64 2.1.28-8.fc38              fedora    792 k
 dbus-libs                    x86_64 1:1.14.4-1.fc38            fedora    156 k
 dnf-data                     noarch 4.14.0-2.fc38              copr_base  41 k
 elfutils-default-yama-scope  noarch 0.188-3.fc38               fedora     15 k
 elfutils-libelf              x86_64 0.188-3.fc38               fedora    196 k
 elfutils-libs                x86_64 0.188-3.fc38               fedora    257 k
 expat                        x86_64 2.5.0-1.fc38               fedora    110 k
 fedora-gpg-keys              noarch 38-0.3                     fedora    125 k
 fedora-release               noarch 38-0.15                    fedora     11 k
 fedora-release-common        noarch 38-0.15                    fedora     21 k
 fedora-release-identity-basic
                              noarch 38-0.15                    fedora     12 k
 fedora-repos                 noarch 38-0.3                     fedora     10 k
 fedora-repos-rawhide         noarch 38-0.3                     fedora    9.7 k
 file-libs                    x86_64 5.42-5.fc38                copr_base 676 k
 filesystem                   x86_64 3.18-2.fc37                fedora    1.1 M
 findutils                    x86_64 1:4.9.0-2.fc37             fedora    492 k
 gawk                         x86_64 5.1.1-4.fc37               fedora    1.0 M
 gdbm-libs                    x86_64 1:1.23-2.fc37              fedora     56 k
 glib2                        x86_64 2.74.1-3.fc38              copr_base 2.7 M
 glibc                        x86_64 2.36.9000-23.fc38          copr_base 2.1 M
 glibc-common                 x86_64 2.36.9000-23.fc38          copr_base 307 k
 glibc-minimal-langpack       x86_64 2.36.9000-23.fc38          copr_base  34 k
 gmp                          x86_64 1:6.2.1-3.fc37             fedora    315 k
 gnupg2                       x86_64 2.4.0-1.fc38               fedora    2.6 M
 gnutls                       x86_64 3.7.8-11.fc38              copr_base 1.1 M
 gpgme                        x86_64 1.17.1-3.fc38              fedora    210 k
 grep                         x86_64 3.8-2.fc38                 fedora    292 k
 ima-evm-utils                x86_64 1.4-6.fc37                 fedora     63 k
 json-c                       x86_64 0.16-3.fc38                fedora     41 k
 keyutils-libs                x86_64 1.6.1-5.fc37               fedora     31 k
 krb5-libs                    x86_64 1.20.1-7.fc38              copr_base 722 k
 libacl                       x86_64 2.3.1-4.fc37               fedora     23 k
 libarchive                   x86_64 3.6.1-3.fc38               fedora    397 k
 libassuan                    x86_64 2.5.5-5.fc37               fedora     67 k
 libattr                      x86_64 2.5.1-5.fc37               fedora     18 k
 libb2                        x86_64 0.98.1-7.fc37              fedora     25 k
 libblkid                     x86_64 2.38.1-3.fc38              fedora    106 k
 libbrotli                    x86_64 1.0.9-11.fc38              copr_base 317 k
 libcap                       x86_64 2.48-5.fc37                fedora     67 k
 libcap-ng                    x86_64 0.8.3-5.fc38               copr_base  33 k
 libcom_err                   x86_64 1.46.5-3.fc37              fedora     25 k
 libcomps                     x86_64 0.1.18-5.fc38              copr_base  77 k
 libcurl                      x86_64 7.87.0-3.fc38              copr_base 304 k
 libdnf                       x86_64 0.68.0-2.fc38              copr_base 653 k
 libevent                     x86_64 2.1.12-8.fc38              copr_base 258 k
 libffi                       x86_64 3.4.4-1.fc38               fedora     38 k
 libfsverity                  x86_64 1.4-8.fc37                 fedora     19 k
 libgcc                       x86_64 13.0.1-0.1.fc38            fedora     93 k
 libgcrypt                    x86_64 1.10.1-6.fc38              fedora    511 k
 libgomp                      x86_64 13.0.1-0.1.fc38            fedora    300 k
 libgpg-error                 x86_64 1.46-1.fc38                fedora    227 k
 libidn2                      x86_64 2.3.4-1.fc38               fedora    160 k
 libksba                      x86_64 1.6.3-1.fc38               fedora    158 k
 libmodulemd                  x86_64 2.14.0-5.fc38              copr_base 234 k
 libmount                     x86_64 2.38.1-3.fc38              fedora    135 k
 libnghttp2                   x86_64 1.51.0-2.fc38              copr_base  76 k
 libnsl2                      x86_64 2.0.0-4.fc37               fedora     30 k
 libpsl                       x86_64 0.21.2-2.fc38              copr_base  66 k
 librepo                      x86_64 1.15.1-2.fc38              copr_base  97 k
 libreport-filesystem         noarch 2.17.6-2.fc38              copr_base  14 k
 libselinux                   x86_64 3.5-0.rc1.1.fc38.1         fedora     86 k
 libsemanage                  x86_64 3.5-0.rc1.1.fc38           fedora    119 k
 libsepol                     x86_64 3.5-0.rc1.1.fc38           fedora    322 k
 libsigsegv                   x86_64 2.14-3.fc37                fedora     27 k
 libsmartcols                 x86_64 2.38.1-3.fc38              fedora     64 k
 libsolv                      x86_64 0.7.22-4.fc38              copr_base 412 k
 libssh                       x86_64 0.10.4-2.fc38              fedora    209 k
 libssh-config                noarch 0.10.4-2.fc38              fedora    8.8 k
 libstdc++                    x86_64 13.0.1-0.1.fc38            fedora    844 k
 libtasn1                     x86_64 4.19.0-1.fc38              fedora     75 k
 libtirpc                     x86_64 1.3.3-0.fc37               fedora     93 k
 libunistring                 x86_64 1.0-2.fc37                 fedora    549 k
 libuuid                      x86_64 2.38.1-3.fc38              fedora     27 k
 libverto                     x86_64 0.3.2-4.fc37               fedora     21 k
 libxcrypt                    x86_64 4.4.33-5.fc38              fedora    120 k
 libxml2                      x86_64 2.10.3-3.fc38              copr_base 701 k
 libyaml                      x86_64 0.2.5-8.fc37               fedora     60 k
 libzstd                      x86_64 1.5.2-3.fc37               fedora    294 k
 lua-libs                     x86_64 5.4.4-7.fc38               fedora    131 k
 lz4-libs                     x86_64 1.9.4-1.fc38               fedora     67 k
 mpdecimal                    x86_64 2.5.1-4.fc37               fedora    102 k
 mpfr                         x86_64 4.1.1-2.fc38               fedora    598 k
 ncurses-base                 noarch 6.4-2.20230114.fc38        fedora     87 k
 ncurses-libs                 x86_64 6.4-2.20230114.fc38        fedora    333 k
 nettle                       x86_64 3.8-2.fc37                 fedora    414 k
 npth                         x86_64 1.6-10.fc38                fedora     24 k
 openldap                     x86_64 2.6.3-1.fc38               fedora    254 k
 openssl-libs                 x86_64 1:3.0.7-3.fc38             fedora    2.1 M
 p11-kit                      x86_64 0.24.1-5.fc38              fedora    376 k
 p11-kit-trust                x86_64 0.24.1-5.fc38              fedora    137 k
 pcre2                        x86_64 10.42-1.fc38               fedora    234 k
 pcre2-syntax                 noarch 10.42-1.fc38               fedora    144 k
 popt                         x86_64 1.19-1.fc38                fedora     66 k
 publicsuffix-list-dafsa      noarch 20221208-1.fc38            fedora     59 k
 python-pip-wheel             noarch 22.3.1-1.fc38              fedora    1.4 M
 python-setuptools-wheel      noarch 65.5.1-1.fc38              fedora    715 k
 python3                      x86_64 3.11.1-3.fc38              fedora     27 k
 python3-dateutil             noarch 1:2.8.2-4.fc37             fedora    361 k
 python3-dbus                 x86_64 1.3.2-2.fc38               copr_base 147 k
 python3-distro               noarch 1.8.0-1.fc38               fedora     49 k
 python3-dnf                  noarch 4.14.0-2.fc38              copr_base 564 k
 python3-dnf-plugins-core     noarch 4.3.1-2.fc38               copr_base 263 k
 python3-gpg                  x86_64 1.17.1-3.fc38              fedora    296 k
 python3-hawkey               x86_64 0.68.0-2.fc38              copr_base 108 k
 python3-libcomps             x86_64 0.1.18-5.fc38              copr_base  48 k
 python3-libdnf               x86_64 0.68.0-2.fc38              copr_base 817 k
 python3-libs                 x86_64 3.11.1-3.fc38              fedora    9.6 M
 python3-rpm                  x86_64 4.18.0-9.fc38              fedora     73 k
 python3-six                  noarch 1.16.0-8.fc37              fedora     42 k
 readline                     x86_64 8.2-2.fc38                 fedora    211 k
 rpm                          x86_64 4.18.0-9.fc38              fedora    569 k
 rpm-build-libs               x86_64 4.18.0-9.fc38              fedora     95 k
 rpm-libs                     x86_64 4.18.0-9.fc38              fedora    312 k
 rpm-sequoia                  x86_64 1.2.0-1.fc38               fedora    829 k
 rpm-sign-libs                x86_64 4.18.0-9.fc38              fedora     27 k
 sed                          x86_64 4.8-11.fc37                fedora    306 k
 setup                        noarch 2.14.3-1.fc38              fedora    152 k
 shadow-utils                 x86_64 2:4.13-3.fc38              fedora    1.3 M
 sqlite-libs                  x86_64 3.40.1-1.fc38              fedora    661 k
 systemd-libs                 x86_64 252.4-598.fc38             fedora    632 k
 tpm2-tss                     x86_64 4.0.0-1.fc38               fedora    711 k
 tzdata                       noarch 2022g-1.fc38               fedora    716 k
 xz-libs                      x86_64 5.2.9-1.fc38               fedora     93 k
 zchunk-libs                  x86_64 1.2.3-1.fc38               fedora     51 k
 zlib                         x86_64 1.2.13-2.fc38              fedora     94 k

Transaction Summary
================================================================================
Install  137 Packages

Total download size: 57 M
Installed size: 200 M
Downloading Packages:
(1/137): crypto-policies-20221215-2.gita4c31a3. 1.1 MB/s |  64 kB     00:00    
(2/137): audit-libs-3.0.9-3.fc38.x86_64.rpm     1.9 MB/s | 117 kB     00:00    
(3/137): curl-7.87.0-3.fc38.x86_64.rpm          5.5 MB/s | 347 kB     00:00    
(4/137): dnf-4.14.0-2.fc38.noarch.rpm           111 MB/s | 467 kB     00:00    
(5/137): dnf-data-4.14.0-2.fc38.noarch.rpm       12 MB/s |  41 kB     00:00    
(6/137): dnf-plugins-core-4.3.1-2.fc38.noarch.r  10 MB/s |  34 kB     00:00    
(7/137): file-libs-5.42-5.fc38.x86_64.rpm        93 MB/s | 676 kB     00:00    
(8/137): glibc-2.36.9000-23.fc38.x86_64.rpm     175 MB/s | 2.1 MB     00:00    
(9/137): glib2-2.74.1-3.fc38.x86_64.rpm         147 MB/s | 2.7 MB     00:00    
(10/137): glibc-common-2.36.9000-23.fc38.x86_64  30 MB/s | 307 kB     00:00    
(11/137): glibc-minimal-langpack-2.36.9000-23.f 8.3 MB/s |  34 kB     00:00    
(12/137): libbrotli-1.0.9-11.fc38.x86_64.rpm     58 MB/s | 317 kB     00:00    
(13/137): krb5-libs-1.20.1-7.fc38.x86_64.rpm     84 MB/s | 722 kB     00:00    
(14/137): gnutls-3.7.8-11.fc38.x86_64.rpm       106 MB/s | 1.1 MB     00:00    
(15/137): libcap-ng-0.8.3-5.fc38.x86_64.rpm     9.2 MB/s |  33 kB     00:00    
(16/137): libcomps-0.1.18-5.fc38.x86_64.rpm      35 MB/s |  77 kB     00:00    
(17/137): libcurl-7.87.0-3.fc38.x86_64.rpm      110 MB/s | 304 kB     00:00    
(18/137): libevent-2.1.12-8.fc38.x86_64.rpm      65 MB/s | 258 kB     00:00    
(19/137): libdnf-0.68.0-2.fc38.x86_64.rpm       115 MB/s | 653 kB     00:00    
(20/137): libmodulemd-2.14.0-5.fc38.x86_64.rpm   65 MB/s | 234 kB     00:00    
(21/137): libnghttp2-1.51.0-2.fc38.x86_64.rpm    30 MB/s |  76 kB     00:00    
(22/137): libpsl-0.21.2-2.fc38.x86_64.rpm        41 MB/s |  66 kB     00:00    
(23/137): librepo-1.15.1-2.fc38.x86_64.rpm       29 MB/s |  97 kB     00:00    
(24/137): libreport-filesystem-2.17.6-2.fc38.no 4.5 MB/s |  14 kB     00:00    
(25/137): libsolv-0.7.22-4.fc38.x86_64.rpm       87 MB/s | 412 kB     00:00    
(26/137): python3-dbus-1.3.2-2.fc38.x86_64.rpm   54 MB/s | 147 kB     00:00    
(27/137): libxml2-2.10.3-3.fc38.x86_64.rpm      127 MB/s | 701 kB     00:00    
(28/137): python3-dnf-4.14.0-2.fc38.noarch.rpm  105 MB/s | 564 kB     00:00    
(29/137): python3-dnf-plugins-core-4.3.1-2.fc38  52 MB/s | 263 kB     00:00    
(30/137): python3-hawkey-0.68.0-2.fc38.x86_64.r  26 MB/s | 108 kB     00:00    
(31/137): python3-libcomps-0.1.18-5.fc38.x86_64  22 MB/s |  48 kB     00:00    
(32/137): python3-libdnf-0.68.0-2.fc38.x86_64.r  20 MB/s | 817 kB     00:00    
(33/137): alternatives-1.21-1.fc38.x86_64.rpm   905 kB/s |  38 kB     00:00    
(34/137): basesystem-11-14.fc37.noarch.rpm      163 kB/s | 7.0 kB     00:00    
(35/137): bzip2-libs-1.0.8-12.fc37.x86_64.rpm    25 MB/s |  41 kB     00:00    
(36/137): bash-5.2.15-1.fc38.x86_64.rpm         129 MB/s | 1.8 MB     00:00    
(37/137): ca-certificates-2022.2.54-5.fc37.noar  59 MB/s | 829 kB     00:00    
(38/137): coreutils-9.1-10.fc38.x86_64.rpm       74 MB/s | 1.1 MB     00:00    
(39/137): dbus-libs-1.14.4-1.fc38.x86_64.rpm     53 MB/s | 156 kB     00:00    
(40/137): cyrus-sasl-lib-2.1.28-8.fc38.x86_64.r 131 MB/s | 792 kB     00:00    
(41/137): elfutils-default-yama-scope-0.188-3.f 3.8 MB/s |  15 kB     00:00    
(42/137): elfutils-libelf-0.188-3.fc38.x86_64.r  73 MB/s | 196 kB     00:00    
(43/137): elfutils-libs-0.188-3.fc38.x86_64.rpm  87 MB/s | 257 kB     00:00    
(44/137): expat-2.5.0-1.fc38.x86_64.rpm          48 MB/s | 110 kB     00:00    
(45/137): fedora-gpg-keys-38-0.3.noarch.rpm      64 MB/s | 125 kB     00:00    
(46/137): fedora-release-38-0.15.noarch.rpm     6.0 MB/s |  11 kB     00:00    
(47/137): fedora-release-common-38-0.15.noarch.  12 MB/s |  21 kB     00:00    
(48/137): fedora-release-identity-basic-38-0.15 6.7 MB/s |  12 kB     00:00    
(49/137): fedora-repos-38-0.3.noarch.rpm        3.3 MB/s |  10 kB     00:00    
(50/137): fedora-repos-rawhide-38-0.3.noarch.rp 3.1 MB/s | 9.7 kB     00:00    
(51/137): filesystem-3.18-2.fc37.x86_64.rpm     161 MB/s | 1.1 MB     00:00    
(52/137): findutils-4.9.0-2.fc37.x86_64.rpm      42 MB/s | 492 kB     00:00    
(53/137): gdbm-libs-1.23-2.fc37.x86_64.rpm       16 MB/s |  56 kB     00:00    
(54/137): gmp-6.2.1-3.fc37.x86_64.rpm            81 MB/s | 315 kB     00:00    
(55/137): gnupg2-2.4.0-1.fc38.x86_64.rpm        225 MB/s | 2.6 MB     00:00    
(56/137): coreutils-common-9.1-10.fc38.x86_64.r  36 MB/s | 2.0 MB     00:00    
(57/137): gpgme-1.17.1-3.fc38.x86_64.rpm         60 MB/s | 210 kB     00:00    
(58/137): gawk-5.1.1-4.fc37.x86_64.rpm           33 MB/s | 1.0 MB     00:00    
(59/137): ima-evm-utils-1.4-6.fc37.x86_64.rpm    32 MB/s |  63 kB     00:00    
(60/137): grep-3.8-2.fc38.x86_64.rpm             75 MB/s | 292 kB     00:00    
(61/137): json-c-0.16-3.fc38.x86_64.rpm          20 MB/s |  41 kB     00:00    
(62/137): keyutils-libs-1.6.1-5.fc37.x86_64.rpm  13 MB/s |  31 kB     00:00    
(63/137): libarchive-3.6.1-3.fc38.x86_64.rpm    132 MB/s | 397 kB     00:00    
(64/137): libassuan-2.5.5-5.fc37.x86_64.rpm      28 MB/s |  67 kB     00:00    
(65/137): libacl-2.3.1-4.fc37.x86_64.rpm        4.7 MB/s |  23 kB     00:00    
(66/137): libb2-0.98.1-7.fc37.x86_64.rpm         17 MB/s |  25 kB     00:00    
(67/137): libattr-2.5.1-5.fc37.x86_64.rpm       6.7 MB/s |  18 kB     00:00    
(68/137): libblkid-2.38.1-3.fc38.x86_64.rpm      33 MB/s | 106 kB     00:00    
(69/137): libcap-2.48-5.fc37.x86_64.rpm          25 MB/s |  67 kB     00:00    
(70/137): libcom_err-1.46.5-3.fc37.x86_64.rpm    11 MB/s |  25 kB     00:00    
(71/137): libffi-3.4.4-1.fc38.x86_64.rpm         26 MB/s |  38 kB     00:00    
(72/137): libfsverity-1.4-8.fc37.x86_64.rpm      13 MB/s |  19 kB     00:00    
(73/137): libgcrypt-1.10.1-6.fc38.x86_64.rpm    153 MB/s | 511 kB     00:00    
(74/137): libgcc-13.0.1-0.1.fc38.x86_64.rpm      18 MB/s |  93 kB     00:00    
(75/137): libgomp-13.0.1-0.1.fc38.x86_64.rpm     66 MB/s | 300 kB     00:00    
(76/137): libgpg-error-1.46-1.fc38.x86_64.rpm   114 MB/s | 227 kB     00:00    
(77/137): libksba-1.6.3-1.fc38.x86_64.rpm        61 MB/s | 158 kB     00:00    
(78/137): libidn2-2.3.4-1.fc38.x86_64.rpm        46 MB/s | 160 kB     00:00    
(79/137): libmount-2.38.1-3.fc38.x86_64.rpm      38 MB/s | 135 kB     00:00    
(80/137): libnsl2-2.0.0-4.fc37.x86_64.rpm        17 MB/s |  30 kB     00:00    
(81/137): libselinux-3.5-0.rc1.1.fc38.1.x86_64.  43 MB/s |  86 kB     00:00    
(82/137): libsemanage-3.5-0.rc1.1.fc38.x86_64.r  45 MB/s | 119 kB     00:00    
(83/137): libsepol-3.5-0.rc1.1.fc38.x86_64.rpm  104 MB/s | 322 kB     00:00    
(84/137): libsigsegv-2.14-3.fc37.x86_64.rpm      11 MB/s |  27 kB     00:00    
(85/137): libsmartcols-2.38.1-3.fc38.x86_64.rpm  32 MB/s |  64 kB     00:00    
(86/137): libssh-config-0.10.4-2.fc38.noarch.rp 6.3 MB/s | 8.8 kB     00:00    
(87/137): libssh-0.10.4-2.fc38.x86_64.rpm        77 MB/s | 209 kB     00:00    
(88/137): libtasn1-4.19.0-1.fc38.x86_64.rpm      43 MB/s |  75 kB     00:00    
(89/137): libtirpc-1.3.3-0.fc37.x86_64.rpm       37 MB/s |  93 kB     00:00    
(90/137): libstdc++-13.0.1-0.1.fc38.x86_64.rpm  147 MB/s | 844 kB     00:00    
(91/137): libuuid-2.38.1-3.fc38.x86_64.rpm       16 MB/s |  27 kB     00:00    
(92/137): libunistring-1.0-2.fc37.x86_64.rpm    116 MB/s | 549 kB     00:00    
(93/137): libverto-0.3.2-4.fc37.x86_64.rpm      7.5 MB/s |  21 kB     00:00    
(94/137): libxcrypt-4.4.33-5.fc38.x86_64.rpm     61 MB/s | 120 kB     00:00    
(95/137): libyaml-0.2.5-8.fc37.x86_64.rpm        41 MB/s |  60 kB     00:00    
(96/137): libzstd-1.5.2-3.fc37.x86_64.rpm        95 MB/s | 294 kB     00:00    
(97/137): lua-libs-5.4.4-7.fc38.x86_64.rpm       44 MB/s | 131 kB     00:00    
(98/137): lz4-libs-1.9.4-1.fc38.x86_64.rpm       22 MB/s |  67 kB     00:00    
(99/137): mpdecimal-2.5.1-4.fc37.x86_64.rpm      63 MB/s | 102 kB     00:00    
(100/137): ncurses-base-6.4-2.20230114.fc38.noa  47 MB/s |  87 kB     00:00    
(101/137): ncurses-libs-6.4-2.20230114.fc38.x86  77 MB/s | 333 kB     00:00    
(102/137): nettle-3.8-2.fc37.x86_64.rpm          91 MB/s | 414 kB     00:00    
(103/137): npth-1.6-10.fc38.x86_64.rpm          9.7 MB/s |  24 kB     00:00    
(104/137): mpfr-4.1.1-2.fc38.x86_64.rpm          56 MB/s | 598 kB     00:00    
(105/137): openldap-2.6.3-1.fc38.x86_64.rpm      61 MB/s | 254 kB     00:00    
(106/137): p11-kit-trust-0.24.1-5.fc38.x86_64.r  32 MB/s | 137 kB     00:00    
(107/137): p11-kit-0.24.1-5.fc38.x86_64.rpm      51 MB/s | 376 kB     00:00    
(108/137): pcre2-10.42-1.fc38.x86_64.rpm         54 MB/s | 234 kB     00:00    
(109/137): openssl-libs-3.0.7-3.fc38.x86_64.rpm 139 MB/s | 2.1 MB     00:00    
(110/137): pcre2-syntax-10.42-1.fc38.noarch.rpm  23 MB/s | 144 kB     00:00    
(111/137): popt-1.19-1.fc38.x86_64.rpm           19 MB/s |  66 kB     00:00    
(112/137): publicsuffix-list-dafsa-20221208-1.f  10 MB/s |  59 kB     00:00    
(113/137): python-setuptools-wheel-65.5.1-1.fc3 108 MB/s | 715 kB     00:00    
(114/137): python-pip-wheel-22.3.1-1.fc38.noarc 137 MB/s | 1.4 MB     00:00    
(115/137): python3-3.11.1-3.fc38.x86_64.rpm     4.1 MB/s |  27 kB     00:00    
(116/137): python3-dateutil-2.8.2-4.fc37.noarch  68 MB/s | 361 kB     00:00    
(117/137): python3-distro-1.8.0-1.fc38.noarch.r  33 MB/s |  49 kB     00:00    
(118/137): python3-gpg-1.17.1-3.fc38.x86_64.rpm  78 MB/s | 296 kB     00:00    
(119/137): python3-rpm-4.18.0-9.fc38.x86_64.rpm  20 MB/s |  73 kB     00:00    
(120/137): python3-six-1.16.0-8.fc37.noarch.rpm  10 MB/s |  42 kB     00:00    
(121/137): readline-8.2-2.fc38.x86_64.rpm        26 MB/s | 211 kB     00:00    
(122/137): rpm-build-libs-4.18.0-9.fc38.x86_64.  15 MB/s |  95 kB     00:00    
(123/137): rpm-libs-4.18.0-9.fc38.x86_64.rpm     61 MB/s | 312 kB     00:00    
(124/137): rpm-sequoia-1.2.0-1.fc38.x86_64.rpm  100 MB/s | 829 kB     00:00    
(125/137): rpm-4.18.0-9.fc38.x86_64.rpm          22 MB/s | 569 kB     00:00    
(126/137): python3-libs-3.11.1-3.fc38.x86_64.rp 204 MB/s | 9.6 MB     00:00    
(127/137): rpm-sign-libs-4.18.0-9.fc38.x86_64.r 2.2 MB/s |  27 kB     00:00    
(128/137): sed-4.8-11.fc37.x86_64.rpm            26 MB/s | 306 kB     00:00    
(129/137): setup-2.14.3-1.fc38.noarch.rpm        51 MB/s | 152 kB     00:00    
(130/137): sqlite-libs-3.40.1-1.fc38.x86_64.rpm  75 MB/s | 661 kB     00:00    
(131/137): systemd-libs-252.4-598.fc38.x86_64.r  68 MB/s | 632 kB     00:00    
(132/137): tpm2-tss-4.0.0-1.fc38.x86_64.rpm     121 MB/s | 711 kB     00:00    
(133/137): xz-libs-5.2.9-1.fc38.x86_64.rpm       31 MB/s |  93 kB     00:00    
(134/137): tzdata-2022g-1.fc38.noarch.rpm        87 MB/s | 716 kB     00:00    
(135/137): zchunk-libs-1.2.3-1.fc38.x86_64.rpm   32 MB/s |  51 kB     00:00    
(136/137): zlib-1.2.13-2.fc38.x86_64.rpm         42 MB/s |  94 kB     00:00    
(137/137): shadow-utils-4.13-3.fc38.x86_64.rpm   38 MB/s | 1.3 MB     00:00    
--------------------------------------------------------------------------------
Total                                           3.6 MB/s |  57 MB     00:15     
fedora                                          1.6 MB/s | 1.6 kB     00:00    
Importing GPG key 0xEB10B464:
 Userid     : "Fedora (38) <fedora-38-primary@fedoraproject.org>"
 Fingerprint: 6A51 BBAB BA3D 5467 B617 1221 809A 8D7C EB10 B464
 From       : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-38-primary
Key imported successfully
fedora                                          1.6 MB/s | 1.6 kB     00:00    
GPG key at file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-38-primary (0xEB10B464) is already installed
fedora                                          1.6 MB/s | 1.6 kB     00:00    
Importing GPG key 0x5323552A:
 Userid     : "Fedora (37) <fedora-37-primary@fedoraproject.org>"
 Fingerprint: ACB5 EE4E 831C 74BB 7C16 8D27 F55A D3FB 5323 552A
 From       : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-37-primary
Key imported successfully
Running transaction check
Transaction check succeeded.
Running transaction test
Transaction test succeeded.
Running transaction
  Running scriptlet: filesystem-3.18-2.fc37.x86_64                          1/1 
  Preparing        :                                                        1/1 
  Installing       : libgcc-13.0.1-0.1.fc38.x86_64                        1/137 
  Running scriptlet: libgcc-13.0.1-0.1.fc38.x86_64                        1/137 
  Installing       : tzdata-2022g-1.fc38.noarch                           2/137 
  Installing       : crypto-policies-20221215-2.gita4c31a3.fc38.noarc     3/137 
  Running scriptlet: crypto-policies-20221215-2.gita4c31a3.fc38.noarc     3/137 
  Installing       : fedora-release-identity-basic-38-0.15.noarch         4/137 
  Installing       : python-setuptools-wheel-65.5.1-1.fc38.noarch         5/137 
  Installing       : publicsuffix-list-dafsa-20221208-1.fc38.noarch       6/137 
  Installing       : pcre2-syntax-10.42-1.fc38.noarch                     7/137 
  Installing       : ncurses-base-6.4-2.20230114.fc38.noarch              8/137 
  Installing       : libssh-config-0.10.4-2.fc38.noarch                   9/137 
  Installing       : fedora-gpg-keys-38-0.3.noarch                       10/137 
  Installing       : fedora-release-38-0.15.noarch                       11/137 
  Installing       : fedora-release-common-38-0.15.noarch                12/137 
  Installing       : fedora-repos-rawhide-38-0.3.noarch                  13/137 
  Installing       : fedora-repos-38-0.3.noarch                          14/137 
  Installing       : setup-2.14.3-1.fc38.noarch                          15/137 
  Running scriptlet: setup-2.14.3-1.fc38.noarch                          15/137 
  Installing       : filesystem-3.18-2.fc37.x86_64                       16/137 
  Installing       : basesystem-11-14.fc37.noarch                        17/137 
  Installing       : glibc-minimal-langpack-2.36.9000-23.fc38.x86_64     18/137 
  Installing       : glibc-common-2.36.9000-23.fc38.x86_64               19/137 
  Running scriptlet: glibc-2.36.9000-23.fc38.x86_64                      20/137 
  Installing       : glibc-2.36.9000-23.fc38.x86_64                      20/137 
  Running scriptlet: glibc-2.36.9000-23.fc38.x86_64                      20/137 
  Installing       : ncurses-libs-6.4-2.20230114.fc38.x86_64             21/137 
  Installing       : bash-5.2.15-1.fc38.x86_64                           22/137 
  Running scriptlet: bash-5.2.15-1.fc38.x86_64                           22/137 
  Installing       : zlib-1.2.13-2.fc38.x86_64                           23/137 
  Installing       : bzip2-libs-1.0.8-12.fc37.x86_64                     24/137 
  Installing       : xz-libs-5.2.9-1.fc38.x86_64                         25/137 
  Installing       : libzstd-1.5.2-3.fc37.x86_64                         26/137 
  Installing       : sqlite-libs-3.40.1-1.fc38.x86_64                    27/137 
  Installing       : gmp-1:6.2.1-3.fc37.x86_64                           28/137 
  Installing       : libcap-2.48-5.fc37.x86_64                           29/137 
  Installing       : libgpg-error-1.46-1.fc38.x86_64                     30/137 
  Installing       : popt-1.19-1.fc38.x86_64                             31/137 
  Installing       : libxml2-2.10.3-3.fc38.x86_64                        32/137 
  Installing       : libstdc++-13.0.1-0.1.fc38.x86_64                    33/137 
  Installing       : libuuid-2.38.1-3.fc38.x86_64                        34/137 
  Installing       : lua-libs-5.4.4-7.fc38.x86_64                        35/137 
  Installing       : file-libs-5.42-5.fc38.x86_64                        36/137 
  Installing       : elfutils-libelf-0.188-3.fc38.x86_64                 37/137 
  Installing       : readline-8.2-2.fc38.x86_64                          38/137 
  Installing       : libattr-2.5.1-5.fc37.x86_64                         39/137 
  Installing       : libacl-2.3.1-4.fc37.x86_64                          40/137 
  Installing       : libffi-3.4.4-1.fc38.x86_64                          41/137 
  Installing       : p11-kit-0.24.1-5.fc38.x86_64                        42/137 
  Installing       : libunistring-1.0-2.fc37.x86_64                      43/137 
  Installing       : libidn2-2.3.4-1.fc38.x86_64                         44/137 
  Installing       : libxcrypt-4.4.33-5.fc38.x86_64                      45/137 
  Installing       : pcre2-10.42-1.fc38.x86_64                           46/137 
  Installing       : libassuan-2.5.5-5.fc37.x86_64                       47/137 
  Installing       : nettle-3.8-2.fc37.x86_64                            48/137 
  Installing       : rpm-sequoia-1.2.0-1.fc38.x86_64                     49/137 
  Installing       : expat-2.5.0-1.fc38.x86_64                           50/137 
  Installing       : gdbm-libs-1:1.23-2.fc37.x86_64                      51/137 
  Installing       : json-c-0.16-3.fc38.x86_64                           52/137 
  Installing       : keyutils-libs-1.6.1-5.fc37.x86_64                   53/137 
  Installing       : libcom_err-1.46.5-3.fc37.x86_64                     54/137 
  Installing       : libgomp-13.0.1-0.1.fc38.x86_64                      55/137 
  Installing       : libsepol-3.5-0.rc1.1.fc38.x86_64                    56/137 
  Installing       : libselinux-3.5-0.rc1.1.fc38.1.x86_64                57/137 
  Installing       : sed-4.8-11.fc37.x86_64                              58/137 
  Installing       : libsmartcols-2.38.1-3.fc38.x86_64                   59/137 
  Installing       : libtasn1-4.19.0-1.fc38.x86_64                       60/137 
  Installing       : lz4-libs-1.9.4-1.fc38.x86_64                        61/137 
  Installing       : systemd-libs-252.4-598.fc38.x86_64                  62/137 
  Installing       : dbus-libs-1:1.14.4-1.fc38.x86_64                    63/137 
  Installing       : findutils-1:4.9.0-2.fc37.x86_64                     64/137 
  Installing       : libb2-0.98.1-7.fc37.x86_64                          65/137 
  Installing       : cyrus-sasl-lib-2.1.28-8.fc38.x86_64                 66/137 
  Installing       : libcomps-0.1.18-5.fc38.x86_64                       67/137 
  Installing       : grep-3.8-2.fc38.x86_64                              68/137 
  Installing       : libpsl-0.21.2-2.fc38.x86_64                         69/137 
  Installing       : libblkid-2.38.1-3.fc38.x86_64                       70/137 
  Installing       : libmount-2.38.1-3.fc38.x86_64                       71/137 
  Installing       : mpdecimal-2.5.1-4.fc37.x86_64                       72/137 
  Installing       : libgcrypt-1.10.1-6.fc38.x86_64                      73/137 
  Installing       : libksba-1.6.3-1.fc38.x86_64                         74/137 
  Installing       : mpfr-4.1.1-2.fc38.x86_64                            75/137 
  Installing       : elfutils-default-yama-scope-0.188-3.fc38.noarch     76/137 
  Running scriptlet: elfutils-default-yama-scope-0.188-3.fc38.noarch     76/137 
  Installing       : elfutils-libs-0.188-3.fc38.x86_64                   77/137 
  Installing       : libbrotli-1.0.9-11.fc38.x86_64                      78/137 
  Installing       : libcap-ng-0.8.3-5.fc38.x86_64                       79/137 
  Installing       : audit-libs-3.0.9-3.fc38.x86_64                      80/137 
  Installing       : rpm-libs-4.18.0-9.fc38.x86_64                       81/137 
  Installing       : rpm-build-libs-4.18.0-9.fc38.x86_64                 82/137 
  Installing       : libsemanage-3.5-0.rc1.1.fc38.x86_64                 83/137 
  Installing       : shadow-utils-2:4.13-3.fc38.x86_64                   84/137 
  Installing       : libnghttp2-1.51.0-2.fc38.x86_64                     85/137 
  Installing       : alternatives-1.21-1.fc38.x86_64                     86/137 
  Installing       : p11-kit-trust-0.24.1-5.fc38.x86_64                  87/137 
  Running scriptlet: p11-kit-trust-0.24.1-5.fc38.x86_64                  87/137 
  Installing       : gnutls-3.7.8-11.fc38.x86_64                         88/137 
  Installing       : glib2-2.74.1-3.fc38.x86_64                          89/137 
  Installing       : libsigsegv-2.14-3.fc37.x86_64                       90/137 
  Installing       : gawk-5.1.1-4.fc37.x86_64                            91/137 
  Installing       : libverto-0.3.2-4.fc37.x86_64                        92/137 
  Installing       : libyaml-0.2.5-8.fc37.x86_64                         93/137 
  Installing       : libmodulemd-2.14.0-5.fc38.x86_64                    94/137 
  Installing       : npth-1.6-10.fc38.x86_64                             95/137 
  Installing       : coreutils-common-9.1-10.fc38.x86_64                 96/137 
  Installing       : openssl-libs-1:3.0.7-3.fc38.x86_64                  97/137 
  Installing       : coreutils-9.1-10.fc38.x86_64                        98/137 
  Running scriptlet: ca-certificates-2022.2.54-5.fc37.noarch             99/137 
  Installing       : ca-certificates-2022.2.54-5.fc37.noarch             99/137 
  Running scriptlet: ca-certificates-2022.2.54-5.fc37.noarch             99/137 
  Installing       : krb5-libs-1.20.1-7.fc38.x86_64                     100/137 
  Installing       : libtirpc-1.3.3-0.fc37.x86_64                       101/137 
  Installing       : libfsverity-1.4-8.fc37.x86_64                      102/137 
  Installing       : zchunk-libs-1.2.3-1.fc38.x86_64                    103/137 
  Installing       : libsolv-0.7.22-4.fc38.x86_64                       104/137 
  Installing       : libnsl2-2.0.0-4.fc37.x86_64                        105/137 
  Installing       : libssh-0.10.4-2.fc38.x86_64                        106/137 
  Installing       : python-pip-wheel-22.3.1-1.fc38.noarch              107/137 
  Installing       : python3-3.11.1-3.fc38.x86_64                       108/137 
  Installing       : python3-libs-3.11.1-3.fc38.x86_64                  109/137 
  Installing       : python3-dbus-1.3.2-2.fc38.x86_64                   110/137 
  Installing       : python3-libcomps-0.1.18-5.fc38.x86_64              111/137 
  Installing       : python3-distro-1.8.0-1.fc38.noarch                 112/137 
  Installing       : python3-six-1.16.0-8.fc37.noarch                   113/137 
  Installing       : python3-dateutil-1:2.8.2-4.fc37.noarch             114/137 
  Installing       : libevent-2.1.12-8.fc38.x86_64                      115/137 
  Installing       : openldap-2.6.3-1.fc38.x86_64                       116/137 
  Installing       : libcurl-7.87.0-3.fc38.x86_64                       117/137 
  Installing       : gnupg2-2.4.0-1.fc38.x86_64                         118/137 
  Installing       : gpgme-1.17.1-3.fc38.x86_64                         119/137 
  Installing       : librepo-1.15.1-2.fc38.x86_64                       120/137 
  Installing       : libdnf-0.68.0-2.fc38.x86_64                        121/137 
  Installing       : python3-libdnf-0.68.0-2.fc38.x86_64                122/137 
  Installing       : python3-hawkey-0.68.0-2.fc38.x86_64                123/137 
  Installing       : python3-gpg-1.17.1-3.fc38.x86_64                   124/137 
  Installing       : curl-7.87.0-3.fc38.x86_64                          125/137 
  Running scriptlet: tpm2-tss-4.0.0-1.fc38.x86_64                       126/137 
useradd: Warning: missing or non-executable shell '/usr/sbin/nologin'

  Installing       : tpm2-tss-4.0.0-1.fc38.x86_64                       126/137 
  Installing       : ima-evm-utils-1.4-6.fc37.x86_64                    127/137 
  Installing       : rpm-sign-libs-4.18.0-9.fc38.x86_64                 128/137 
  Installing       : python3-rpm-4.18.0-9.fc38.x86_64                   129/137 
  Installing       : libarchive-3.6.1-3.fc38.x86_64                     130/137 
  Installing       : libreport-filesystem-2.17.6-2.fc38.noarch          131/137 
  Installing       : dnf-data-4.14.0-2.fc38.noarch                      132/137 
warning: /etc/dnf/dnf.conf created as /etc/dnf/dnf.conf.rpmnew

  Installing       : python3-dnf-4.14.0-2.fc38.noarch                   133/137 
  Installing       : python3-dnf-plugins-core-4.3.1-2.fc38.noarch       134/137 
  Installing       : dnf-plugins-core-4.3.1-2.fc38.noarch               135/137 
  Installing       : dnf-4.14.0-2.fc38.noarch                           136/137 
  Running scriptlet: dnf-4.14.0-2.fc38.noarch                           136/137 
  Running scriptlet: rpm-4.18.0-9.fc38.x86_64                           137/137 
  Installing       : rpm-4.18.0-9.fc38.x86_64                           137/137 
  Running scriptlet: filesystem-3.18-2.fc37.x86_64                      137/137 
  Running scriptlet: ca-certificates-2022.2.54-5.fc37.noarch            137/137 
  Running scriptlet: rpm-4.18.0-9.fc38.x86_64                           137/137 
  Verifying        : audit-libs-3.0.9-3.fc38.x86_64                       1/137 
  Verifying        : crypto-policies-20221215-2.gita4c31a3.fc38.noarc     2/137 
  Verifying        : curl-7.87.0-3.fc38.x86_64                            3/137 
  Verifying        : dnf-4.14.0-2.fc38.noarch                             4/137 
  Verifying        : dnf-data-4.14.0-2.fc38.noarch                        5/137 
  Verifying        : dnf-plugins-core-4.3.1-2.fc38.noarch                 6/137 
  Verifying        : file-libs-5.42-5.fc38.x86_64                         7/137 
  Verifying        : glib2-2.74.1-3.fc38.x86_64                           8/137 
  Verifying        : glibc-2.36.9000-23.fc38.x86_64                       9/137 
  Verifying        : glibc-common-2.36.9000-23.fc38.x86_64               10/137 
  Verifying        : glibc-minimal-langpack-2.36.9000-23.fc38.x86_64     11/137 
  Verifying        : gnutls-3.7.8-11.fc38.x86_64                         12/137 
  Verifying        : krb5-libs-1.20.1-7.fc38.x86_64                      13/137 
  Verifying        : libbrotli-1.0.9-11.fc38.x86_64                      14/137 
  Verifying        : libcap-ng-0.8.3-5.fc38.x86_64                       15/137 
  Verifying        : libcomps-0.1.18-5.fc38.x86_64                       16/137 
  Verifying        : libcurl-7.87.0-3.fc38.x86_64                        17/137 
  Verifying        : libdnf-0.68.0-2.fc38.x86_64                         18/137 
  Verifying        : libevent-2.1.12-8.fc38.x86_64                       19/137 
  Verifying        : libmodulemd-2.14.0-5.fc38.x86_64                    20/137 
  Verifying        : libnghttp2-1.51.0-2.fc38.x86_64                     21/137 
  Verifying        : libpsl-0.21.2-2.fc38.x86_64                         22/137 
  Verifying        : librepo-1.15.1-2.fc38.x86_64                        23/137 
  Verifying        : libreport-filesystem-2.17.6-2.fc38.noarch           24/137 
  Verifying        : libsolv-0.7.22-4.fc38.x86_64                        25/137 
  Verifying        : libxml2-2.10.3-3.fc38.x86_64                        26/137 
  Verifying        : python3-dbus-1.3.2-2.fc38.x86_64                    27/137 
  Verifying        : python3-dnf-4.14.0-2.fc38.noarch                    28/137 
  Verifying        : python3-dnf-plugins-core-4.3.1-2.fc38.noarch        29/137 
  Verifying        : python3-hawkey-0.68.0-2.fc38.x86_64                 30/137 
  Verifying        : python3-libcomps-0.1.18-5.fc38.x86_64               31/137 
  Verifying        : python3-libdnf-0.68.0-2.fc38.x86_64                 32/137 
  Verifying        : alternatives-1.21-1.fc38.x86_64                     33/137 
  Verifying        : basesystem-11-14.fc37.noarch                        34/137 
  Verifying        : bash-5.2.15-1.fc38.x86_64                           35/137 
  Verifying        : bzip2-libs-1.0.8-12.fc37.x86_64                     36/137 
  Verifying        : ca-certificates-2022.2.54-5.fc37.noarch             37/137 
  Verifying        : coreutils-9.1-10.fc38.x86_64                        38/137 
  Verifying        : coreutils-common-9.1-10.fc38.x86_64                 39/137 
  Verifying        : cyrus-sasl-lib-2.1.28-8.fc38.x86_64                 40/137 
  Verifying        : dbus-libs-1:1.14.4-1.fc38.x86_64                    41/137 
  Verifying        : elfutils-default-yama-scope-0.188-3.fc38.noarch     42/137 
  Verifying        : elfutils-libelf-0.188-3.fc38.x86_64                 43/137 
  Verifying        : elfutils-libs-0.188-3.fc38.x86_64                   44/137 
  Verifying        : expat-2.5.0-1.fc38.x86_64                           45/137 
  Verifying        : fedora-gpg-keys-38-0.3.noarch                       46/137 
  Verifying        : fedora-release-38-0.15.noarch                       47/137 
  Verifying        : fedora-release-common-38-0.15.noarch                48/137 
  Verifying        : fedora-release-identity-basic-38-0.15.noarch        49/137 
  Verifying        : fedora-repos-38-0.3.noarch                          50/137 
  Verifying        : fedora-repos-rawhide-38-0.3.noarch                  51/137 
  Verifying        : filesystem-3.18-2.fc37.x86_64                       52/137 
  Verifying        : findutils-1:4.9.0-2.fc37.x86_64                     53/137 
  Verifying        : gawk-5.1.1-4.fc37.x86_64                            54/137 
  Verifying        : gdbm-libs-1:1.23-2.fc37.x86_64                      55/137 
  Verifying        : gmp-1:6.2.1-3.fc37.x86_64                           56/137 
  Verifying        : gnupg2-2.4.0-1.fc38.x86_64                          57/137 
  Verifying        : gpgme-1.17.1-3.fc38.x86_64                          58/137 
  Verifying        : grep-3.8-2.fc38.x86_64                              59/137 
  Verifying        : ima-evm-utils-1.4-6.fc37.x86_64                     60/137 
  Verifying        : json-c-0.16-3.fc38.x86_64                           61/137 
  Verifying        : keyutils-libs-1.6.1-5.fc37.x86_64                   62/137 
  Verifying        : libacl-2.3.1-4.fc37.x86_64                          63/137 
  Verifying        : libarchive-3.6.1-3.fc38.x86_64                      64/137 
  Verifying        : libassuan-2.5.5-5.fc37.x86_64                       65/137 
  Verifying        : libattr-2.5.1-5.fc37.x86_64                         66/137 
  Verifying        : libb2-0.98.1-7.fc37.x86_64                          67/137 
  Verifying        : libblkid-2.38.1-3.fc38.x86_64                       68/137 
  Verifying        : libcap-2.48-5.fc37.x86_64                           69/137 
  Verifying        : libcom_err-1.46.5-3.fc37.x86_64                     70/137 
  Verifying        : libffi-3.4.4-1.fc38.x86_64                          71/137 
  Verifying        : libfsverity-1.4-8.fc37.x86_64                       72/137 
  Verifying        : libgcc-13.0.1-0.1.fc38.x86_64                       73/137 
  Verifying        : libgcrypt-1.10.1-6.fc38.x86_64                      74/137 
  Verifying        : libgomp-13.0.1-0.1.fc38.x86_64                      75/137 
  Verifying        : libgpg-error-1.46-1.fc38.x86_64                     76/137 
  Verifying        : libidn2-2.3.4-1.fc38.x86_64                         77/137 
  Verifying        : libksba-1.6.3-1.fc38.x86_64                         78/137 
  Verifying        : libmount-2.38.1-3.fc38.x86_64                       79/137 
  Verifying        : libnsl2-2.0.0-4.fc37.x86_64                         80/137 
  Verifying        : libselinux-3.5-0.rc1.1.fc38.1.x86_64                81/137 
  Verifying        : libsemanage-3.5-0.rc1.1.fc38.x86_64                 82/137 
  Verifying        : libsepol-3.5-0.rc1.1.fc38.x86_64                    83/137 
  Verifying        : libsigsegv-2.14-3.fc37.x86_64                       84/137 
  Verifying        : libsmartcols-2.38.1-3.fc38.x86_64                   85/137 
  Verifying        : libssh-0.10.4-2.fc38.x86_64                         86/137 
  Verifying        : libssh-config-0.10.4-2.fc38.noarch                  87/137 
  Verifying        : libstdc++-13.0.1-0.1.fc38.x86_64                    88/137 
  Verifying        : libtasn1-4.19.0-1.fc38.x86_64                       89/137 
  Verifying        : libtirpc-1.3.3-0.fc37.x86_64                        90/137 
  Verifying        : libunistring-1.0-2.fc37.x86_64                      91/137 
  Verifying        : libuuid-2.38.1-3.fc38.x86_64                        92/137 
  Verifying        : libverto-0.3.2-4.fc37.x86_64                        93/137 
  Verifying        : libxcrypt-4.4.33-5.fc38.x86_64                      94/137 
  Verifying        : libyaml-0.2.5-8.fc37.x86_64                         95/137 
  Verifying        : libzstd-1.5.2-3.fc37.x86_64                         96/137 
  Verifying        : lua-libs-5.4.4-7.fc38.x86_64                        97/137 
  Verifying        : lz4-libs-1.9.4-1.fc38.x86_64                        98/137 
  Verifying        : mpdecimal-2.5.1-4.fc37.x86_64                       99/137 
  Verifying        : mpfr-4.1.1-2.fc38.x86_64                           100/137 
  Verifying        : ncurses-base-6.4-2.20230114.fc38.noarch            101/137 
  Verifying        : ncurses-libs-6.4-2.20230114.fc38.x86_64            102/137 
  Verifying        : nettle-3.8-2.fc37.x86_64                           103/137 
  Verifying        : npth-1.6-10.fc38.x86_64                            104/137 
  Verifying        : openldap-2.6.3-1.fc38.x86_64                       105/137 
  Verifying        : openssl-libs-1:3.0.7-3.fc38.x86_64                 106/137 
  Verifying        : p11-kit-0.24.1-5.fc38.x86_64                       107/137 
  Verifying        : p11-kit-trust-0.24.1-5.fc38.x86_64                 108/137 
  Verifying        : pcre2-10.42-1.fc38.x86_64                          109/137 
  Verifying        : pcre2-syntax-10.42-1.fc38.noarch                   110/137 
  Verifying        : popt-1.19-1.fc38.x86_64                            111/137 
  Verifying        : publicsuffix-list-dafsa-20221208-1.fc38.noarch     112/137 
  Verifying        : python-pip-wheel-22.3.1-1.fc38.noarch              113/137 
  Verifying        : python-setuptools-wheel-65.5.1-1.fc38.noarch       114/137 
  Verifying        : python3-3.11.1-3.fc38.x86_64                       115/137 
  Verifying        : python3-dateutil-1:2.8.2-4.fc37.noarch             116/137 
  Verifying        : python3-distro-1.8.0-1.fc38.noarch                 117/137 
  Verifying        : python3-gpg-1.17.1-3.fc38.x86_64                   118/137 
  Verifying        : python3-libs-3.11.1-3.fc38.x86_64                  119/137 
  Verifying        : python3-rpm-4.18.0-9.fc38.x86_64                   120/137 
  Verifying        : python3-six-1.16.0-8.fc37.noarch                   121/137 
  Verifying        : readline-8.2-2.fc38.x86_64                         122/137 
  Verifying        : rpm-4.18.0-9.fc38.x86_64                           123/137 
  Verifying        : rpm-build-libs-4.18.0-9.fc38.x86_64                124/137 
  Verifying        : rpm-libs-4.18.0-9.fc38.x86_64                      125/137 
  Verifying        : rpm-sequoia-1.2.0-1.fc38.x86_64                    126/137 
  Verifying        : rpm-sign-libs-4.18.0-9.fc38.x86_64                 127/137 
  Verifying        : sed-4.8-11.fc37.x86_64                             128/137 
  Verifying        : setup-2.14.3-1.fc38.noarch                         129/137 
  Verifying        : shadow-utils-2:4.13-3.fc38.x86_64                  130/137 
  Verifying        : sqlite-libs-3.40.1-1.fc38.x86_64                   131/137 
  Verifying        : systemd-libs-252.4-598.fc38.x86_64                 132/137 
  Verifying        : tpm2-tss-4.0.0-1.fc38.x86_64                       133/137 
  Verifying        : tzdata-2022g-1.fc38.noarch                         134/137 
  Verifying        : xz-libs-5.2.9-1.fc38.x86_64                        135/137 
  Verifying        : zchunk-libs-1.2.3-1.fc38.x86_64                    136/137 
  Verifying        : zlib-1.2.13-2.fc38.x86_64                          137/137 
Installed products updated.

Installed:
  alternatives-1.21-1.fc38.x86_64                                               
  audit-libs-3.0.9-3.fc38.x86_64                                                
  basesystem-11-14.fc37.noarch                                                  
  bash-5.2.15-1.fc38.x86_64                                                     
  bzip2-libs-1.0.8-12.fc37.x86_64                                               
  ca-certificates-2022.2.54-5.fc37.noarch                                       
  coreutils-9.1-10.fc38.x86_64                                                  
  coreutils-common-9.1-10.fc38.x86_64                                           
  crypto-policies-20221215-2.gita4c31a3.fc38.noarch                             
  curl-7.87.0-3.fc38.x86_64                                                     
  cyrus-sasl-lib-2.1.28-8.fc38.x86_64                                           
  dbus-libs-1:1.14.4-1.fc38.x86_64                                              
  dnf-4.14.0-2.fc38.noarch                                                      
  dnf-data-4.14.0-2.fc38.noarch                                                 
  dnf-plugins-core-4.3.1-2.fc38.noarch                                          
  elfutils-default-yama-scope-0.188-3.fc38.noarch                               
  elfutils-libelf-0.188-3.fc38.x86_64                                           
  elfutils-libs-0.188-3.fc38.x86_64                                             
  expat-2.5.0-1.fc38.x86_64                                                     
  fedora-gpg-keys-38-0.3.noarch                                                 
  fedora-release-38-0.15.noarch                                                 
  fedora-release-common-38-0.15.noarch                                          
  fedora-release-identity-basic-38-0.15.noarch                                  
  fedora-repos-38-0.3.noarch                                                    
  fedora-repos-rawhide-38-0.3.noarch                                            
  file-libs-5.42-5.fc38.x86_64                                                  
  filesystem-3.18-2.fc37.x86_64                                                 
  findutils-1:4.9.0-2.fc37.x86_64                                               
  gawk-5.1.1-4.fc37.x86_64                                                      
  gdbm-libs-1:1.23-2.fc37.x86_64                                                
  glib2-2.74.1-3.fc38.x86_64                                                    
  glibc-2.36.9000-23.fc38.x86_64                                                
  glibc-common-2.36.9000-23.fc38.x86_64                                         
  glibc-minimal-langpack-2.36.9000-23.fc38.x86_64                               
  gmp-1:6.2.1-3.fc37.x86_64                                                     
  gnupg2-2.4.0-1.fc38.x86_64                                                    
  gnutls-3.7.8-11.fc38.x86_64                                                   
  gpgme-1.17.1-3.fc38.x86_64                                                    
  grep-3.8-2.fc38.x86_64                                                        
  ima-evm-utils-1.4-6.fc37.x86_64                                               
  json-c-0.16-3.fc38.x86_64                                                     
  keyutils-libs-1.6.1-5.fc37.x86_64                                             
  krb5-libs-1.20.1-7.fc38.x86_64                                                
  libacl-2.3.1-4.fc37.x86_64                                                    
  libarchive-3.6.1-3.fc38.x86_64                                                
  libassuan-2.5.5-5.fc37.x86_64                                                 
  libattr-2.5.1-5.fc37.x86_64                                                   
  libb2-0.98.1-7.fc37.x86_64                                                    
  libblkid-2.38.1-3.fc38.x86_64                                                 
  libbrotli-1.0.9-11.fc38.x86_64                                                
  libcap-2.48-5.fc37.x86_64                                                     
  libcap-ng-0.8.3-5.fc38.x86_64                                                 
  libcom_err-1.46.5-3.fc37.x86_64                                               
  libcomps-0.1.18-5.fc38.x86_64                                                 
  libcurl-7.87.0-3.fc38.x86_64                                                  
  libdnf-0.68.0-2.fc38.x86_64                                                   
  libevent-2.1.12-8.fc38.x86_64                                                 
  libffi-3.4.4-1.fc38.x86_64                                                    
  libfsverity-1.4-8.fc37.x86_64                                                 
  libgcc-13.0.1-0.1.fc38.x86_64                                                 
  libgcrypt-1.10.1-6.fc38.x86_64                                                
  libgomp-13.0.1-0.1.fc38.x86_64                                                
  libgpg-error-1.46-1.fc38.x86_64                                               
  libidn2-2.3.4-1.fc38.x86_64                                                   
  libksba-1.6.3-1.fc38.x86_64                                                   
  libmodulemd-2.14.0-5.fc38.x86_64                                              
  libmount-2.38.1-3.fc38.x86_64                                                 
  libnghttp2-1.51.0-2.fc38.x86_64                                               
  libnsl2-2.0.0-4.fc37.x86_64                                                   
  libpsl-0.21.2-2.fc38.x86_64                                                   
  librepo-1.15.1-2.fc38.x86_64                                                  
  libreport-filesystem-2.17.6-2.fc38.noarch                                     
  libselinux-3.5-0.rc1.1.fc38.1.x86_64                                          
  libsemanage-3.5-0.rc1.1.fc38.x86_64                                           
  libsepol-3.5-0.rc1.1.fc38.x86_64                                              
  libsigsegv-2.14-3.fc37.x86_64                                                 
  libsmartcols-2.38.1-3.fc38.x86_64                                             
  libsolv-0.7.22-4.fc38.x86_64                                                  
  libssh-0.10.4-2.fc38.x86_64                                                   
  libssh-config-0.10.4-2.fc38.noarch                                            
  libstdc++-13.0.1-0.1.fc38.x86_64                                              
  libtasn1-4.19.0-1.fc38.x86_64                                                 
  libtirpc-1.3.3-0.fc37.x86_64                                                  
  libunistring-1.0-2.fc37.x86_64                                                
  libuuid-2.38.1-3.fc38.x86_64                                                  
  libverto-0.3.2-4.fc37.x86_64                                                  
  libxcrypt-4.4.33-5.fc38.x86_64                                                
  libxml2-2.10.3-3.fc38.x86_64                                                  
  libyaml-0.2.5-8.fc37.x86_64                                                   
  libzstd-1.5.2-3.fc37.x86_64                                                   
  lua-libs-5.4.4-7.fc38.x86_64                                                  
  lz4-libs-1.9.4-1.fc38.x86_64                                                  
  mpdecimal-2.5.1-4.fc37.x86_64                                                 
  mpfr-4.1.1-2.fc38.x86_64                                                      
  ncurses-base-6.4-2.20230114.fc38.noarch                                       
  ncurses-libs-6.4-2.20230114.fc38.x86_64                                       
  nettle-3.8-2.fc37.x86_64                                                      
  npth-1.6-10.fc38.x86_64                                                       
  openldap-2.6.3-1.fc38.x86_64                                                  
  openssl-libs-1:3.0.7-3.fc38.x86_64                                            
  p11-kit-0.24.1-5.fc38.x86_64                                                  
  p11-kit-trust-0.24.1-5.fc38.x86_64                                            
  pcre2-10.42-1.fc38.x86_64                                                     
  pcre2-syntax-10.42-1.fc38.noarch                                              
  popt-1.19-1.fc38.x86_64                                                       
  publicsuffix-list-dafsa-20221208-1.fc38.noarch                                
  python-pip-wheel-22.3.1-1.fc38.noarch                                         
  python-setuptools-wheel-65.5.1-1.fc38.noarch                                  
  python3-3.11.1-3.fc38.x86_64                                                  
  python3-dateutil-1:2.8.2-4.fc37.noarch                                        
  python3-dbus-1.3.2-2.fc38.x86_64                                              
  python3-distro-1.8.0-1.fc38.noarch                                            
  python3-dnf-4.14.0-2.fc38.noarch                                              
  python3-dnf-plugins-core-4.3.1-2.fc38.noarch                                  
  python3-gpg-1.17.1-3.fc38.x86_64                                              
  python3-hawkey-0.68.0-2.fc38.x86_64                                           
  python3-libcomps-0.1.18-5.fc38.x86_64                                         
  python3-libdnf-0.68.0-2.fc38.x86_64                                           
  python3-libs-3.11.1-3.fc38.x86_64                                             
  python3-rpm-4.18.0-9.fc38.x86_64                                              
  python3-six-1.16.0-8.fc37.noarch                                              
  readline-8.2-2.fc38.x86_64                                                    
  rpm-4.18.0-9.fc38.x86_64                                                      
  rpm-build-libs-4.18.0-9.fc38.x86_64                                           
  rpm-libs-4.18.0-9.fc38.x86_64                                                 
  rpm-sequoia-1.2.0-1.fc38.x86_64                                               
  rpm-sign-libs-4.18.0-9.fc38.x86_64                                            
  sed-4.8-11.fc37.x86_64                                                        
  setup-2.14.3-1.fc38.noarch                                                    
  shadow-utils-2:4.13-3.fc38.x86_64                                             
  sqlite-libs-3.40.1-1.fc38.x86_64                                              
  systemd-libs-252.4-598.fc38.x86_64                                            
  tpm2-tss-4.0.0-1.fc38.x86_64                                                  
  tzdata-2022g-1.fc38.noarch                                                    
  xz-libs-5.2.9-1.fc38.x86_64                                                   
  zchunk-libs-1.2.3-1.fc38.x86_64                                               
  zlib-1.2.13-2.fc38.x86_64                                                     

Complete!
Finish(bootstrap): dnf install
Start(bootstrap): creating root cache
Finish(bootstrap): creating root cache
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1674292270.246865/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
Mock Version: 3.5
INFO: Mock Version: 3.5
Start: dnf install
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Copr repository                                  36 MB/s |  10 MB     00:00    
fedora                                           36 MB/s |  65 MB     00:01    
Last metadata expiration check: 0:00:02 ago on Sat Jan 21 09:12:03 2023.
Dependencies resolved.
================================================================================
 Package                      Arch   Version                    Repo       Size
================================================================================
Installing group/module packages:
 bash                         x86_64 5.2.15-1.fc38              fedora    1.8 M
 bzip2                        x86_64 1.0.8-12.fc37              fedora     52 k
 coreutils                    x86_64 9.1-10.fc38                fedora    1.1 M
 cpio                         x86_64 2.13-13.fc38               fedora    276 k
 diffutils                    x86_64 3.9-1.fc38                 fedora    397 k
 fedora-release-common        noarch 38-0.15                    fedora     21 k
 findutils                    x86_64 1:4.9.0-2.fc37             fedora    492 k
 gawk                         x86_64 5.1.1-4.fc37               fedora    1.0 M
 glibc-minimal-langpack       x86_64 2.36.9000-23.fc38          copr_base  34 k
 grep                         x86_64 3.8-2.fc38                 fedora    292 k
 gzip                         x86_64 1.12-2.fc37                fedora    166 k
 info                         x86_64 7.0.1-1.fc38               fedora    181 k
 patch                        x86_64 2.7.6-17.fc37              fedora    124 k
 redhat-rpm-config            noarch 245-1.fc38                 fedora     82 k
 rpm-build                    x86_64 4.18.0-9.fc38              fedora     77 k
 sed                          x86_64 4.8-11.fc37                fedora    306 k
 shadow-utils                 x86_64 2:4.13-3.fc38              fedora    1.3 M
 tar                          x86_64 2:1.34-5.fc38              fedora    885 k
 unzip                        x86_64 6.0-58.fc38                fedora    182 k
 util-linux                   x86_64 2.38.1-3.fc38              fedora    2.3 M
 which                        x86_64 2.21-36.fc38               fedora     41 k
 xz                           x86_64 5.2.9-1.fc38               fedora    306 k
Installing dependencies:
 alternatives                 x86_64 1.21-1.fc38                fedora     38 k
 ansible-srpm-macros          noarch 1-8.1.fc38                 fedora    8.6 k
 audit-libs                   x86_64 3.0.9-3.fc38               copr_base 117 k
 authselect                   x86_64 1.4.2-1.fc38               fedora    144 k
 authselect-libs              x86_64 1.4.2-1.fc38               fedora    250 k
 basesystem                   noarch 11-14.fc37                 fedora    7.0 k
 binutils                     x86_64 2.39-6.fc38                fedora    5.5 M
 binutils-gold                x86_64 2.39-6.fc38                fedora    777 k
 bzip2-libs                   x86_64 1.0.8-12.fc37              fedora     41 k
 ca-certificates              noarch 2022.2.54-5.fc37           fedora    829 k
 coreutils-common             x86_64 9.1-10.fc38                fedora    2.0 M
 cracklib                     x86_64 2.9.7-30.fc38              fedora     92 k
 crypto-policies              noarch 20221215-2.gita4c31a3.fc38 copr_base  64 k
 curl                         x86_64 7.87.0-3.fc38              copr_base 347 k
 cyrus-sasl-lib               x86_64 2.1.28-8.fc38              fedora    792 k
 debugedit                    x86_64 5.0-5.fc37                 fedora     77 k
 dwz                          x86_64 0.15-1.fc38                fedora    136 k
 ed                           x86_64 1.19-1.fc38                fedora     78 k
 efi-srpm-macros              noarch 5-6.fc37                   fedora     22 k
 elfutils                     x86_64 0.188-3.fc38               fedora    529 k
 elfutils-debuginfod-client   x86_64 0.188-3.fc38               fedora     40 k
 elfutils-default-yama-scope  noarch 0.188-3.fc38               fedora     15 k
 elfutils-libelf              x86_64 0.188-3.fc38               fedora    196 k
 elfutils-libs                x86_64 0.188-3.fc38               fedora    257 k
 fedora-gpg-keys              noarch 38-0.3                     fedora    125 k
 fedora-release               noarch 38-0.15                    fedora     11 k
 fedora-release-identity-basic
                              noarch 38-0.15                    fedora     12 k
 fedora-repos                 noarch 38-0.3                     fedora     10 k
 fedora-repos-rawhide         noarch 38-0.3                     fedora    9.7 k
 file                         x86_64 5.42-5.fc38                copr_base  49 k
 file-libs                    x86_64 5.42-5.fc38                copr_base 676 k
 filesystem                   x86_64 3.18-2.fc37                fedora    1.1 M
 fonts-srpm-macros            noarch 1:2.0.5-10.fc38            fedora     26 k
 fpc-srpm-macros              noarch 1.3-6.fc37                 fedora    7.7 k
 gdb-minimal                  x86_64 12.1-10.fc38               fedora    3.7 M
 gdbm-libs                    x86_64 1:1.23-2.fc37              fedora     56 k
 ghc-srpm-macros              noarch 1.5.0-7.fc37               fedora    7.8 k
 glibc                        x86_64 2.36.9000-23.fc38          copr_base 2.1 M
 glibc-common                 x86_64 2.36.9000-23.fc38          copr_base 307 k
 glibc-gconv-extra            x86_64 2.36.9000-23.fc38          copr_base 1.5 M
 gmp                          x86_64 1:6.2.1-3.fc37             fedora    315 k
 gnat-srpm-macros             noarch 5-1.fc38                   fedora    8.4 k
 go-srpm-macros               noarch 3.2.0-1.fc38               fedora     27 k
 jansson                      x86_64 2.13.1-6.fc38              copr_base  45 k
 kernel-srpm-macros           noarch 1.0-15.fc37                fedora    9.4 k
 keyutils-libs                x86_64 1.6.1-5.fc37               fedora     31 k
 krb5-libs                    x86_64 1.20.1-7.fc38              copr_base 722 k
 libacl                       x86_64 2.3.1-4.fc37               fedora     23 k
 libarchive                   x86_64 3.6.1-3.fc38               fedora    397 k
 libattr                      x86_64 2.5.1-5.fc37               fedora     18 k
 libblkid                     x86_64 2.38.1-3.fc38              fedora    106 k
 libbrotli                    x86_64 1.0.9-11.fc38              copr_base 317 k
 libcap                       x86_64 2.48-5.fc37                fedora     67 k
 libcap-ng                    x86_64 0.8.3-5.fc38               copr_base  33 k
 libcom_err                   x86_64 1.46.5-3.fc37              fedora     25 k
 libcurl                      x86_64 7.87.0-3.fc38              copr_base 304 k
 libdb                        x86_64 5.3.28-54.fc38             fedora    764 k
 libeconf                     x86_64 0.4.0-4.fc37               fedora     27 k
 libevent                     x86_64 2.1.12-8.fc38              copr_base 258 k
 libfdisk                     x86_64 2.38.1-3.fc38              fedora    160 k
 libffi                       x86_64 3.4.4-1.fc38               fedora     38 k
 libgcc                       x86_64 13.0.1-0.1.fc38            fedora     93 k
 libgomp                      x86_64 13.0.1-0.1.fc38            fedora    300 k
 libidn2                      x86_64 2.3.4-1.fc38               fedora    160 k
 libmount                     x86_64 2.38.1-3.fc38              fedora    135 k
 libnghttp2                   x86_64 1.51.0-2.fc38              copr_base  76 k
 libnsl2                      x86_64 2.0.0-4.fc37               fedora     30 k
 libpkgconf                   x86_64 1.8.0-3.fc37               fedora     36 k
 libpsl                       x86_64 0.21.2-2.fc38              copr_base  66 k
 libpwquality                 x86_64 1.4.5-2.fc38               copr_base 108 k
 libselinux                   x86_64 3.5-0.rc1.1.fc38.1         fedora     86 k
 libsemanage                  x86_64 3.5-0.rc1.1.fc38           fedora    119 k
 libsepol                     x86_64 3.5-0.rc1.1.fc38           fedora    322 k
 libsigsegv                   x86_64 2.14-3.fc37                fedora     27 k
 libsmartcols                 x86_64 2.38.1-3.fc38              fedora     64 k
 libssh                       x86_64 0.10.4-2.fc38              fedora    209 k
 libssh-config                noarch 0.10.4-2.fc38              fedora    8.8 k
 libstdc++                    x86_64 13.0.1-0.1.fc38            fedora    844 k
 libtasn1                     x86_64 4.19.0-1.fc38              fedora     75 k
 libtirpc                     x86_64 1.3.3-0.fc37               fedora     93 k
 libunistring                 x86_64 1.0-2.fc37                 fedora    549 k
 libutempter                  x86_64 1.2.1-7.fc37               fedora     26 k
 libuuid                      x86_64 2.38.1-3.fc38              fedora     27 k
 libverto                     x86_64 0.3.2-4.fc37               fedora     21 k
 libxcrypt                    x86_64 4.4.33-5.fc38              fedora    120 k
 libxml2                      x86_64 2.10.3-3.fc38              copr_base 701 k
 libzstd                      x86_64 1.5.2-3.fc37               fedora    294 k
 lua-libs                     x86_64 5.4.4-7.fc38               fedora    131 k
 lua-srpm-macros              noarch 1-7.fc37                   fedora    8.8 k
 lz4-libs                     x86_64 1.9.4-1.fc38               fedora     67 k
 mpfr                         x86_64 4.1.1-2.fc38               fedora    598 k
 ncurses-base                 noarch 6.4-2.20230114.fc38        fedora     87 k
 ncurses-libs                 x86_64 6.4-2.20230114.fc38        fedora    333 k
 nettle                       x86_64 3.8-2.fc37                 fedora    414 k
 nim-srpm-macros              noarch 3-7.fc37                   fedora    8.4 k
 ocaml-srpm-macros            noarch 7-2.fc37                   fedora     13 k
 openblas-srpm-macros         noarch 2-12.fc37                  fedora    7.5 k
 openldap                     x86_64 2.6.3-1.fc38               fedora    254 k
 openssl-libs                 x86_64 1:3.0.7-3.fc38             fedora    2.1 M
 p11-kit                      x86_64 0.24.1-5.fc38              fedora    376 k
 p11-kit-trust                x86_64 0.24.1-5.fc38              fedora    137 k
 package-notes-srpm-macros    noarch 0.5-6.fc38                 fedora     11 k
 pam                          x86_64 1.5.2-15.fc38              fedora    559 k
 pam-libs                     x86_64 1.5.2-15.fc38              fedora     57 k
 pcre2                        x86_64 10.42-1.fc38               fedora    234 k
 pcre2-syntax                 noarch 10.42-1.fc38               fedora    144 k
 perl-srpm-macros             noarch 1-47.fc38                  fedora    8.2 k
 pkgconf                      x86_64 1.8.0-3.fc37               fedora     41 k
 pkgconf-m4                   noarch 1.8.0-3.fc37               fedora     14 k
 pkgconf-pkg-config           x86_64 1.8.0-3.fc37               fedora     10 k
 popt                         x86_64 1.19-1.fc38                fedora     66 k
 publicsuffix-list-dafsa      noarch 20221208-1.fc38            fedora     59 k
 python-srpm-macros           noarch 3.11-7.fc38                fedora     26 k
 qt5-srpm-macros              noarch 5.15.8-1.fc38              fedora    8.0 k
 readline                     x86_64 8.2-2.fc38                 fedora    211 k
 rpm                          x86_64 4.18.0-9.fc38              fedora    569 k
 rpm-build-libs               x86_64 4.18.0-9.fc38              fedora     95 k
 rpm-libs                     x86_64 4.18.0-9.fc38              fedora    312 k
 rpm-sequoia                  x86_64 1.2.0-1.fc38               fedora    829 k
 rpmautospec-rpm-macros       noarch 0.3.1-1.fc38               fedora    8.8 k
 rust-srpm-macros             noarch 23-1.fc38                  fedora    9.4 k
 setup                        noarch 2.14.3-1.fc38              fedora    152 k
 sqlite-libs                  x86_64 3.40.1-1.fc38              fedora    661 k
 systemd-libs                 x86_64 252.4-598.fc38             fedora    632 k
 tzdata                       noarch 2022g-1.fc38               fedora    716 k
 util-linux-core              x86_64 2.38.1-3.fc38              fedora    470 k
 xxhash-libs                  x86_64 0.8.1-3.fc37               fedora     41 k
 xz-libs                      x86_64 5.2.9-1.fc38               fedora     93 k
 zip                          x86_64 3.0-35.fc38                fedora    259 k
 zlib                         x86_64 1.2.13-2.fc38              fedora     94 k
 zstd                         x86_64 1.5.2-3.fc37               fedora    447 k
Installing Groups:
 Buildsystem building group                                                    

Transaction Summary
================================================================================
Install  153 Packages

Total download size: 52 M
Installed size: 181 M
Downloading Packages:
(1/153): crypto-policies-20221215-2.gita4c31a3. 2.1 MB/s |  64 kB     00:00    
(2/153): audit-libs-3.0.9-3.fc38.x86_64.rpm     3.7 MB/s | 117 kB     00:00    
(3/153): curl-7.87.0-3.fc38.x86_64.rpm           10 MB/s | 347 kB     00:00    
(4/153): file-5.42-5.fc38.x86_64.rpm             18 MB/s |  49 kB     00:00    
(5/153): file-libs-5.42-5.fc38.x86_64.rpm       150 MB/s | 676 kB     00:00    
(6/153): glibc-common-2.36.9000-23.fc38.x86_64.  76 MB/s | 307 kB     00:00    
(7/153): glibc-2.36.9000-23.fc38.x86_64.rpm     206 MB/s | 2.1 MB     00:00    
(8/153): glibc-minimal-langpack-2.36.9000-23.fc 4.8 MB/s |  34 kB     00:00    
(9/153): glibc-gconv-extra-2.36.9000-23.fc38.x8 116 MB/s | 1.5 MB     00:00    
(10/153): jansson-2.13.1-6.fc38.x86_64.rpm      8.6 MB/s |  45 kB     00:00    
(11/153): krb5-libs-1.20.1-7.fc38.x86_64.rpm    121 MB/s | 722 kB     00:00    
(12/153): libbrotli-1.0.9-11.fc38.x86_64.rpm     71 MB/s | 317 kB     00:00    
(13/153): libcap-ng-0.8.3-5.fc38.x86_64.rpm     7.8 MB/s |  33 kB     00:00    
(14/153): libcurl-7.87.0-3.fc38.x86_64.rpm      125 MB/s | 304 kB     00:00    
(15/153): libnghttp2-1.51.0-2.fc38.x86_64.rpm    30 MB/s |  76 kB     00:00    
(16/153): libevent-2.1.12-8.fc38.x86_64.rpm      61 MB/s | 258 kB     00:00    
(17/153): libpsl-0.21.2-2.fc38.x86_64.rpm        21 MB/s |  66 kB     00:00    
(18/153): libpwquality-1.4.5-2.fc38.x86_64.rpm   39 MB/s | 108 kB     00:00    
(19/153): libxml2-2.10.3-3.fc38.x86_64.rpm      162 MB/s | 701 kB     00:00    
(20/153): ansible-srpm-macros-1-8.1.fc38.noarch  42 kB/s | 8.6 kB     00:00    
(21/153): authselect-1.4.2-1.fc38.x86_64.rpm    699 kB/s | 144 kB     00:00    
(22/153): alternatives-1.21-1.fc38.x86_64.rpm   180 kB/s |  38 kB     00:00    
(23/153): authselect-libs-1.4.2-1.fc38.x86_64.r  66 MB/s | 250 kB     00:00    
(24/153): basesystem-11-14.fc37.noarch.rpm      1.5 MB/s | 7.0 kB     00:00    
(25/153): bash-5.2.15-1.fc38.x86_64.rpm         263 MB/s | 1.8 MB     00:00    
(26/153): binutils-gold-2.39-6.fc38.x86_64.rpm  130 MB/s | 777 kB     00:00    
(27/153): bzip2-1.0.8-12.fc37.x86_64.rpm         13 MB/s |  52 kB     00:00    
(28/153): bzip2-libs-1.0.8-12.fc37.x86_64.rpm   9.1 MB/s |  41 kB     00:00    
(29/153): ca-certificates-2022.2.54-5.fc37.noar 132 MB/s | 829 kB     00:00    
(30/153): coreutils-9.1-10.fc38.x86_64.rpm      107 MB/s | 1.1 MB     00:00    
(31/153): cpio-2.13-13.fc38.x86_64.rpm           33 MB/s | 276 kB     00:00    
(32/153): binutils-2.39-6.fc38.x86_64.rpm       137 MB/s | 5.5 MB     00:00    
(33/153): coreutils-common-9.1-10.fc38.x86_64.r  78 MB/s | 2.0 MB     00:00    
(34/153): cracklib-2.9.7-30.fc38.x86_64.rpm     9.8 MB/s |  92 kB     00:00    
(35/153): debugedit-5.0-5.fc37.x86_64.rpm        28 MB/s |  77 kB     00:00    
(36/153): diffutils-3.9-1.fc38.x86_64.rpm       103 MB/s | 397 kB     00:00    
(37/153): cyrus-sasl-lib-2.1.28-8.fc38.x86_64.r 129 MB/s | 792 kB     00:00    
(38/153): dwz-0.15-1.fc38.x86_64.rpm             27 MB/s | 136 kB     00:00    
(39/153): ed-1.19-1.fc38.x86_64.rpm              19 MB/s |  78 kB     00:00    
(40/153): efi-srpm-macros-5-6.fc37.noarch.rpm   5.4 MB/s |  22 kB     00:00    
(41/153): elfutils-debuginfod-client-0.188-3.fc 6.3 MB/s |  40 kB     00:00    
(42/153): elfutils-0.188-3.fc38.x86_64.rpm       66 MB/s | 529 kB     00:00    
(43/153): elfutils-default-yama-scope-0.188-3.f 2.5 MB/s |  15 kB     00:00    
(44/153): elfutils-libelf-0.188-3.fc38.x86_64.r  57 MB/s | 196 kB     00:00    
(45/153): elfutils-libs-0.188-3.fc38.x86_64.rpm  77 MB/s | 257 kB     00:00    
(46/153): fedora-gpg-keys-38-0.3.noarch.rpm      38 MB/s | 125 kB     00:00    
(47/153): fedora-release-38-0.15.noarch.rpm     7.4 MB/s |  11 kB     00:00    
(48/153): fedora-release-common-38-0.15.noarch.  16 MB/s |  21 kB     00:00    
(49/153): fedora-release-identity-basic-38-0.15 6.3 MB/s |  12 kB     00:00    
(50/153): fedora-repos-38-0.3.noarch.rpm        5.8 MB/s |  10 kB     00:00    
(51/153): fedora-repos-rawhide-38-0.3.noarch.rp 7.9 MB/s | 9.7 kB     00:00    
(52/153): fonts-srpm-macros-2.0.5-10.fc38.noarc  11 MB/s |  26 kB     00:00    
(53/153): findutils-4.9.0-2.fc37.x86_64.rpm      99 MB/s | 492 kB     00:00    
(54/153): filesystem-3.18-2.fc37.x86_64.rpm     159 MB/s | 1.1 MB     00:00    
(55/153): fpc-srpm-macros-1.3-6.fc37.noarch.rpm 1.6 MB/s | 7.7 kB     00:00    
(56/153): gawk-5.1.1-4.fc37.x86_64.rpm          204 MB/s | 1.0 MB     00:00    
(57/153): gdbm-libs-1.23-2.fc37.x86_64.rpm       16 MB/s |  56 kB     00:00    
(58/153): ghc-srpm-macros-1.5.0-7.fc37.noarch.r 1.8 MB/s | 7.8 kB     00:00    
(59/153): gmp-6.2.1-3.fc37.x86_64.rpm            81 MB/s | 315 kB     00:00    
(60/153): gnat-srpm-macros-5-1.fc38.noarch.rpm  3.8 MB/s | 8.4 kB     00:00    
(61/153): gdb-minimal-12.1-10.fc38.x86_64.rpm   208 MB/s | 3.7 MB     00:00    
(62/153): go-srpm-macros-3.2.0-1.fc38.noarch.rp 4.3 MB/s |  27 kB     00:00    
(63/153): grep-3.8-2.fc38.x86_64.rpm             51 MB/s | 292 kB     00:00    
(64/153): gzip-1.12-2.fc37.x86_64.rpm            90 MB/s | 166 kB     00:00    
(65/153): info-7.0.1-1.fc38.x86_64.rpm           76 MB/s | 181 kB     00:00    
(66/153): keyutils-libs-1.6.1-5.fc37.x86_64.rpm  17 MB/s |  31 kB     00:00    
(67/153): kernel-srpm-macros-1.0-15.fc37.noarch 2.7 MB/s | 9.4 kB     00:00    
(68/153): libacl-2.3.1-4.fc37.x86_64.rpm         16 MB/s |  23 kB     00:00    
(69/153): libarchive-3.6.1-3.fc38.x86_64.rpm    147 MB/s | 397 kB     00:00    
(70/153): libattr-2.5.1-5.fc37.x86_64.rpm       7.0 MB/s |  18 kB     00:00    
(71/153): libblkid-2.38.1-3.fc38.x86_64.rpm      39 MB/s | 106 kB     00:00    
(72/153): libcom_err-1.46.5-3.fc37.x86_64.rpm    20 MB/s |  25 kB     00:00    
(73/153): libcap-2.48-5.fc37.x86_64.rpm          34 MB/s |  67 kB     00:00    
(74/153): libeconf-0.4.0-4.fc37.x86_64.rpm       11 MB/s |  27 kB     00:00    
(75/153): libfdisk-2.38.1-3.fc38.x86_64.rpm      31 MB/s | 160 kB     00:00    
(76/153): libdb-5.3.28-54.fc38.x86_64.rpm        93 MB/s | 764 kB     00:00    
(77/153): libffi-3.4.4-1.fc38.x86_64.rpm        8.1 MB/s |  38 kB     00:00    
(78/153): libgcc-13.0.1-0.1.fc38.x86_64.rpm      46 MB/s |  93 kB     00:00    
(79/153): libgomp-13.0.1-0.1.fc38.x86_64.rpm     85 MB/s | 300 kB     00:00    
(80/153): libidn2-2.3.4-1.fc38.x86_64.rpm        41 MB/s | 160 kB     00:00    
(81/153): libmount-2.38.1-3.fc38.x86_64.rpm      31 MB/s | 135 kB     00:00    
(82/153): libpkgconf-1.8.0-3.fc37.x86_64.rpm     14 MB/s |  36 kB     00:00    
(83/153): libnsl2-2.0.0-4.fc37.x86_64.rpm       9.4 MB/s |  30 kB     00:00    
(84/153): libselinux-3.5-0.rc1.1.fc38.1.x86_64.  21 MB/s |  86 kB     00:00    
(85/153): libsemanage-3.5-0.rc1.1.fc38.x86_64.r  27 MB/s | 119 kB     00:00    
(86/153): libsepol-3.5-0.rc1.1.fc38.x86_64.rpm   60 MB/s | 322 kB     00:00    
(87/153): libsigsegv-2.14-3.fc37.x86_64.rpm     5.7 MB/s |  27 kB     00:00    
(88/153): libsmartcols-2.38.1-3.fc38.x86_64.rpm  23 MB/s |  64 kB     00:00    
(89/153): libssh-0.10.4-2.fc38.x86_64.rpm        57 MB/s | 209 kB     00:00    
(90/153): libssh-config-0.10.4-2.fc38.noarch.rp 2.3 MB/s | 8.8 kB     00:00    
(91/153): libtasn1-4.19.0-1.fc38.x86_64.rpm      25 MB/s |  75 kB     00:00    
(92/153): libtirpc-1.3.3-0.fc37.x86_64.rpm       30 MB/s |  93 kB     00:00    
(93/153): libstdc++-13.0.1-0.1.fc38.x86_64.rpm  101 MB/s | 844 kB     00:00    
(94/153): libunistring-1.0-2.fc37.x86_64.rpm    119 MB/s | 549 kB     00:00    
(95/153): libutempter-1.2.1-7.fc37.x86_64.rpm   8.0 MB/s |  26 kB     00:00    
(96/153): libuuid-2.38.1-3.fc38.x86_64.rpm       12 MB/s |  27 kB     00:00    
(97/153): libverto-0.3.2-4.fc37.x86_64.rpm       10 MB/s |  21 kB     00:00    
(98/153): libxcrypt-4.4.33-5.fc38.x86_64.rpm     45 MB/s | 120 kB     00:00    
(99/153): lua-libs-5.4.4-7.fc38.x86_64.rpm       60 MB/s | 131 kB     00:00    
(100/153): libzstd-1.5.2-3.fc37.x86_64.rpm       68 MB/s | 294 kB     00:00    
(101/153): lua-srpm-macros-1-7.fc37.noarch.rpm  3.1 MB/s | 8.8 kB     00:00    
(102/153): lz4-libs-1.9.4-1.fc38.x86_64.rpm      42 MB/s |  67 kB     00:00    
(103/153): mpfr-4.1.1-2.fc38.x86_64.rpm         199 MB/s | 598 kB     00:00    
(104/153): ncurses-base-6.4-2.20230114.fc38.noa  21 MB/s |  87 kB     00:00    
(105/153): ncurses-libs-6.4-2.20230114.fc38.x86  74 MB/s | 333 kB     00:00    
(106/153): nettle-3.8-2.fc37.x86_64.rpm         163 MB/s | 414 kB     00:00    
(107/153): nim-srpm-macros-3-7.fc37.noarch.rpm  7.4 MB/s | 8.4 kB     00:00    
(108/153): ocaml-srpm-macros-7-2.fc37.noarch.rp 8.4 MB/s |  13 kB     00:00    
(109/153): openblas-srpm-macros-2-12.fc37.noarc 5.2 MB/s | 7.5 kB     00:00    
(110/153): openldap-2.6.3-1.fc38.x86_64.rpm      77 MB/s | 254 kB     00:00    
(111/153): p11-kit-0.24.1-5.fc38.x86_64.rpm      80 MB/s | 376 kB     00:00    
(112/153): openssl-libs-3.0.7-3.fc38.x86_64.rpm 224 MB/s | 2.1 MB     00:00    
(113/153): p11-kit-trust-0.24.1-5.fc38.x86_64.r  23 MB/s | 137 kB     00:00    
(114/153): package-notes-srpm-macros-0.5-6.fc38 3.1 MB/s |  11 kB     00:00    
(115/153): pam-1.5.2-15.fc38.x86_64.rpm         151 MB/s | 559 kB     00:00    
(116/153): pam-libs-1.5.2-15.fc38.x86_64.rpm     16 MB/s |  57 kB     00:00    
(117/153): patch-2.7.6-17.fc37.x86_64.rpm        29 MB/s | 124 kB     00:00    
(118/153): pcre2-10.42-1.fc38.x86_64.rpm         49 MB/s | 234 kB     00:00    
(119/153): pcre2-syntax-10.42-1.fc38.noarch.rpm  31 MB/s | 144 kB     00:00    
(120/153): perl-srpm-macros-1-47.fc38.noarch.rp 1.9 MB/s | 8.2 kB     00:00    
(121/153): pkgconf-1.8.0-3.fc37.x86_64.rpm       20 MB/s |  41 kB     00:00    
(122/153): pkgconf-m4-1.8.0-3.fc37.noarch.rpm   7.4 MB/s |  14 kB     00:00    
(123/153): pkgconf-pkg-config-1.8.0-3.fc37.x86_ 4.1 MB/s |  10 kB     00:00    
(124/153): popt-1.19-1.fc38.x86_64.rpm           30 MB/s |  66 kB     00:00    
(125/153): publicsuffix-list-dafsa-20221208-1.f  25 MB/s |  59 kB     00:00    
(126/153): python-srpm-macros-3.11-7.fc38.noarc  12 MB/s |  26 kB     00:00    
(127/153): qt5-srpm-macros-5.15.8-1.fc38.noarch 6.4 MB/s | 8.0 kB     00:00    
(128/153): readline-8.2-2.fc38.x86_64.rpm        99 MB/s | 211 kB     00:00    
(129/153): redhat-rpm-config-245-1.fc38.noarch.  30 MB/s |  82 kB     00:00    
(130/153): rpm-4.18.0-9.fc38.x86_64.rpm         140 MB/s | 569 kB     00:00    
(131/153): rpm-build-4.18.0-9.fc38.x86_64.rpm    21 MB/s |  77 kB     00:00    
(132/153): rpm-build-libs-4.18.0-9.fc38.x86_64.  25 MB/s |  95 kB     00:00    
(133/153): rpm-libs-4.18.0-9.fc38.x86_64.rpm     85 MB/s | 312 kB     00:00    
(134/153): rpmautospec-rpm-macros-0.3.1-1.fc38. 3.0 MB/s | 8.8 kB     00:00    
(135/153): rpm-sequoia-1.2.0-1.fc38.x86_64.rpm  131 MB/s | 829 kB     00:00    
(136/153): rust-srpm-macros-23-1.fc38.noarch.rp 2.1 MB/s | 9.4 kB     00:00    
(137/153): sed-4.8-11.fc37.x86_64.rpm            73 MB/s | 306 kB     00:00    
(138/153): setup-2.14.3-1.fc38.noarch.rpm        24 MB/s | 152 kB     00:00    
(139/153): sqlite-libs-3.40.1-1.fc38.x86_64.rpm  82 MB/s | 661 kB     00:00    
(140/153): tar-1.34-5.fc38.x86_64.rpm           197 MB/s | 885 kB     00:00    
(141/153): systemd-libs-252.4-598.fc38.x86_64.r  58 MB/s | 632 kB     00:00    
(142/153): tzdata-2022g-1.fc38.noarch.rpm       121 MB/s | 716 kB     00:00    
(143/153): unzip-6.0-58.fc38.x86_64.rpm          37 MB/s | 182 kB     00:00    
(144/153): util-linux-core-2.38.1-3.fc38.x86_64 118 MB/s | 470 kB     00:00    
(145/153): which-2.21-36.fc38.x86_64.rpm         23 MB/s |  41 kB     00:00    
(146/153): xxhash-libs-0.8.1-3.fc37.x86_64.rpm   25 MB/s |  41 kB     00:00    
(147/153): shadow-utils-4.13-3.fc38.x86_64.rpm   38 MB/s | 1.3 MB     00:00    
(148/153): xz-5.2.9-1.fc38.x86_64.rpm            86 MB/s | 306 kB     00:00    
(149/153): xz-libs-5.2.9-1.fc38.x86_64.rpm       44 MB/s |  93 kB     00:00    
(150/153): zip-3.0-35.fc38.x86_64.rpm            61 MB/s | 259 kB     00:00    
(151/153): zlib-1.2.13-2.fc38.x86_64.rpm         24 MB/s |  94 kB     00:00    
(152/153): zstd-1.5.2-3.fc37.x86_64.rpm         118 MB/s | 447 kB     00:00    
(153/153): util-linux-2.38.1-3.fc38.x86_64.rpm   70 MB/s | 2.3 MB     00:00    
--------------------------------------------------------------------------------
Total                                            64 MB/s |  52 MB     00:00     
fedora                                          1.6 MB/s | 1.6 kB     00:00    
Importing GPG key 0xEB10B464:
 Userid     : "Fedora (38) <fedora-38-primary@fedoraproject.org>"
 Fingerprint: 6A51 BBAB BA3D 5467 B617 1221 809A 8D7C EB10 B464
 From       : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-38-primary
Key imported successfully
fedora                                          1.6 MB/s | 1.6 kB     00:00    
GPG key at file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-38-primary (0xEB10B464) is already installed
fedora                                          1.6 MB/s | 1.6 kB     00:00    
Importing GPG key 0x5323552A:
 Userid     : "Fedora (37) <fedora-37-primary@fedoraproject.org>"
 Fingerprint: ACB5 EE4E 831C 74BB 7C16 8D27 F55A D3FB 5323 552A
 From       : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-37-primary
Key imported successfully
Running transaction check
Transaction check succeeded.
Running transaction test
Transaction test succeeded.
Running transaction
  Running scriptlet: filesystem-3.18-2.fc37.x86_64                          1/1 
  Preparing        :                                                        1/1 
  Installing       : libgcc-13.0.1-0.1.fc38.x86_64                        1/153 
  Running scriptlet: libgcc-13.0.1-0.1.fc38.x86_64                        1/153 
  Installing       : crypto-policies-20221215-2.gita4c31a3.fc38.noarc     2/153 
  Running scriptlet: crypto-policies-20221215-2.gita4c31a3.fc38.noarc     2/153 
  Installing       : tzdata-2022g-1.fc38.noarch                           3/153 
  Installing       : fedora-release-identity-basic-38-0.15.noarch         4/153 
  Installing       : rust-srpm-macros-23-1.fc38.noarch                    5/153 
  Installing       : qt5-srpm-macros-5.15.8-1.fc38.noarch                 6/153 
  Installing       : publicsuffix-list-dafsa-20221208-1.fc38.noarch       7/153 
  Installing       : pkgconf-m4-1.8.0-3.fc37.noarch                       8/153 
  Installing       : perl-srpm-macros-1-47.fc38.noarch                    9/153 
  Installing       : pcre2-syntax-10.42-1.fc38.noarch                    10/153 
  Installing       : package-notes-srpm-macros-0.5-6.fc38.noarch         11/153 
  Installing       : openblas-srpm-macros-2-12.fc37.noarch               12/153 
  Installing       : ocaml-srpm-macros-7-2.fc37.noarch                   13/153 
  Installing       : nim-srpm-macros-3-7.fc37.noarch                     14/153 
  Installing       : ncurses-base-6.4-2.20230114.fc38.noarch             15/153 
  Installing       : libssh-config-0.10.4-2.fc38.noarch                  16/153 
  Installing       : kernel-srpm-macros-1.0-15.fc37.noarch               17/153 
  Installing       : gnat-srpm-macros-5-1.fc38.noarch                    18/153 
  Installing       : ghc-srpm-macros-1.5.0-7.fc37.noarch                 19/153 
  Installing       : fpc-srpm-macros-1.3-6.fc37.noarch                   20/153 
  Installing       : fedora-gpg-keys-38-0.3.noarch                       21/153 
  Installing       : fedora-release-38-0.15.noarch                       22/153 
  Installing       : fedora-release-common-38-0.15.noarch                23/153 
  Installing       : fedora-repos-rawhide-38-0.3.noarch                  24/153 
  Installing       : fedora-repos-38-0.3.noarch                          25/153 
  Installing       : setup-2.14.3-1.fc38.noarch                          26/153 
warning: /etc/hosts created as /etc/hosts.rpmnew

  Running scriptlet: setup-2.14.3-1.fc38.noarch                          26/153 
  Installing       : filesystem-3.18-2.fc37.x86_64                       27/153 
  Installing       : basesystem-11-14.fc37.noarch                        28/153 
  Installing       : glibc-gconv-extra-2.36.9000-23.fc38.x86_64          29/153 
  Running scriptlet: glibc-gconv-extra-2.36.9000-23.fc38.x86_64          29/153 
  Installing       : glibc-minimal-langpack-2.36.9000-23.fc38.x86_64     30/153 
  Installing       : glibc-common-2.36.9000-23.fc38.x86_64               31/153 
  Running scriptlet: glibc-2.36.9000-23.fc38.x86_64                      32/153 
  Installing       : glibc-2.36.9000-23.fc38.x86_64                      32/153 
  Running scriptlet: glibc-2.36.9000-23.fc38.x86_64                      32/153 
  Installing       : ncurses-libs-6.4-2.20230114.fc38.x86_64             33/153 
  Installing       : bash-5.2.15-1.fc38.x86_64                           34/153 
  Running scriptlet: bash-5.2.15-1.fc38.x86_64                           34/153 
  Installing       : zlib-1.2.13-2.fc38.x86_64                           35/153 
  Installing       : xz-libs-5.2.9-1.fc38.x86_64                         36/153 
  Installing       : bzip2-libs-1.0.8-12.fc37.x86_64                     37/153 
  Installing       : elfutils-libelf-0.188-3.fc38.x86_64                 38/153 
  Installing       : gmp-1:6.2.1-3.fc37.x86_64                           39/153 
  Installing       : libstdc++-13.0.1-0.1.fc38.x86_64                    40/153 
  Installing       : libuuid-2.38.1-3.fc38.x86_64                        41/153 
  Installing       : libzstd-1.5.2-3.fc37.x86_64                         42/153 
  Installing       : popt-1.19-1.fc38.x86_64                             43/153 
  Installing       : libblkid-2.38.1-3.fc38.x86_64                       44/153 
  Installing       : readline-8.2-2.fc38.x86_64                          45/153 
  Installing       : libattr-2.5.1-5.fc37.x86_64                         46/153 
  Installing       : libacl-2.3.1-4.fc37.x86_64                          47/153 
  Installing       : libcap-2.48-5.fc37.x86_64                           48/153 
  Installing       : libxcrypt-4.4.33-5.fc38.x86_64                      49/153 
  Installing       : lz4-libs-1.9.4-1.fc38.x86_64                        50/153 
  Installing       : systemd-libs-252.4-598.fc38.x86_64                  51/153 
  Installing       : mpfr-4.1.1-2.fc38.x86_64                            52/153 
  Installing       : dwz-0.15-1.fc38.x86_64                              53/153 
  Installing       : unzip-6.0-58.fc38.x86_64                            54/153 
  Installing       : file-libs-5.42-5.fc38.x86_64                        55/153 
  Installing       : file-5.42-5.fc38.x86_64                             56/153 
  Installing       : sqlite-libs-3.40.1-1.fc38.x86_64                    57/153 
  Installing       : libcap-ng-0.8.3-5.fc38.x86_64                       58/153 
  Installing       : audit-libs-3.0.9-3.fc38.x86_64                      59/153 
  Installing       : alternatives-1.21-1.fc38.x86_64                     60/153 
  Installing       : libcom_err-1.46.5-3.fc37.x86_64                     61/153 
  Installing       : libeconf-0.4.0-4.fc37.x86_64                        62/153 
  Installing       : pam-libs-1.5.2-15.fc38.x86_64                       63/153 
  Installing       : libsepol-3.5-0.rc1.1.fc38.x86_64                    64/153 
  Installing       : libsmartcols-2.38.1-3.fc38.x86_64                   65/153 
  Installing       : libunistring-1.0-2.fc37.x86_64                      66/153 
  Installing       : libidn2-2.3.4-1.fc38.x86_64                         67/153 
  Installing       : lua-libs-5.4.4-7.fc38.x86_64                        68/153 
  Installing       : pcre2-10.42-1.fc38.x86_64                           69/153 
  Installing       : libselinux-3.5-0.rc1.1.fc38.1.x86_64                70/153 
  Installing       : sed-4.8-11.fc37.x86_64                              71/153 
  Installing       : grep-3.8-2.fc38.x86_64                              72/153 
  Installing       : findutils-1:4.9.0-2.fc37.x86_64                     73/153 
  Installing       : xz-5.2.9-1.fc38.x86_64                              74/153 
  Installing       : libmount-2.38.1-3.fc38.x86_64                       75/153 
  Installing       : util-linux-core-2.38.1-3.fc38.x86_64                76/153 
  Installing       : libsemanage-3.5-0.rc1.1.fc38.x86_64                 77/153 
  Installing       : shadow-utils-2:4.13-3.fc38.x86_64                   78/153 
  Running scriptlet: libutempter-1.2.1-7.fc37.x86_64                     79/153 
  Installing       : libutempter-1.2.1-7.fc37.x86_64                     79/153 
  Installing       : tar-2:1.34-5.fc38.x86_64                            80/153 
  Installing       : libpsl-0.21.2-2.fc38.x86_64                         81/153 
  Installing       : zip-3.0-35.fc38.x86_64                              82/153 
  Installing       : zstd-1.5.2-3.fc37.x86_64                            83/153 
  Installing       : libfdisk-2.38.1-3.fc38.x86_64                       84/153 
  Installing       : nettle-3.8-2.fc37.x86_64                            85/153 
  Installing       : rpm-sequoia-1.2.0-1.fc38.x86_64                     86/153 
  Installing       : rpm-libs-4.18.0-9.fc38.x86_64                       87/153 
  Installing       : bzip2-1.0.8-12.fc37.x86_64                          88/153 
  Installing       : libxml2-2.10.3-3.fc38.x86_64                        89/153 
  Installing       : ed-1.19-1.fc38.x86_64                               90/153 
  Installing       : patch-2.7.6-17.fc37.x86_64                          91/153 
  Installing       : elfutils-default-yama-scope-0.188-3.fc38.noarch     92/153 
  Running scriptlet: elfutils-default-yama-scope-0.188-3.fc38.noarch     92/153 
  Installing       : jansson-2.13.1-6.fc38.x86_64                        93/153 
  Installing       : libbrotli-1.0.9-11.fc38.x86_64                      94/153 
  Installing       : libnghttp2-1.51.0-2.fc38.x86_64                     95/153 
  Installing       : cpio-2.13-13.fc38.x86_64                            96/153 
  Installing       : diffutils-3.9-1.fc38.x86_64                         97/153 
  Installing       : gdbm-libs-1:1.23-2.fc37.x86_64                      98/153 
  Installing       : cyrus-sasl-lib-2.1.28-8.fc38.x86_64                 99/153 
  Installing       : keyutils-libs-1.6.1-5.fc37.x86_64                  100/153 
  Installing       : libdb-5.3.28-54.fc38.x86_64                        101/153 
  Installing       : libffi-3.4.4-1.fc38.x86_64                         102/153 
  Installing       : p11-kit-0.24.1-5.fc38.x86_64                       103/153 
  Installing       : libgomp-13.0.1-0.1.fc38.x86_64                     104/153 
  Installing       : libpkgconf-1.8.0-3.fc37.x86_64                     105/153 
  Installing       : pkgconf-1.8.0-3.fc37.x86_64                        106/153 
  Installing       : pkgconf-pkg-config-1.8.0-3.fc37.x86_64             107/153 
  Installing       : libsigsegv-2.14-3.fc37.x86_64                      108/153 
  Installing       : gawk-5.1.1-4.fc37.x86_64                           109/153 
  Installing       : libtasn1-4.19.0-1.fc38.x86_64                      110/153 
  Installing       : p11-kit-trust-0.24.1-5.fc38.x86_64                 111/153 
  Running scriptlet: p11-kit-trust-0.24.1-5.fc38.x86_64                 111/153 
  Installing       : libverto-0.3.2-4.fc37.x86_64                       112/153 
  Installing       : xxhash-libs-0.8.1-3.fc37.x86_64                    113/153 
  Installing       : coreutils-common-9.1-10.fc38.x86_64                114/153 
  Installing       : openssl-libs-1:3.0.7-3.fc38.x86_64                 115/153 
  Installing       : coreutils-9.1-10.fc38.x86_64                       116/153 
  Running scriptlet: ca-certificates-2022.2.54-5.fc37.noarch            117/153 
  Installing       : ca-certificates-2022.2.54-5.fc37.noarch            117/153 
  Running scriptlet: ca-certificates-2022.2.54-5.fc37.noarch            117/153 
  Installing       : krb5-libs-1.20.1-7.fc38.x86_64                     118/153 
  Installing       : libtirpc-1.3.3-0.fc37.x86_64                       119/153 
  Running scriptlet: authselect-libs-1.4.2-1.fc38.x86_64                120/153 
  Installing       : authselect-libs-1.4.2-1.fc38.x86_64                120/153 
  Installing       : gzip-1.12-2.fc37.x86_64                            121/153 
  Installing       : cracklib-2.9.7-30.fc38.x86_64                      122/153 
  Installing       : libpwquality-1.4.5-2.fc38.x86_64                   123/153 
  Installing       : authselect-1.4.2-1.fc38.x86_64                     124/153 
  Installing       : libnsl2-2.0.0-4.fc37.x86_64                        125/153 
  Installing       : pam-1.5.2-15.fc38.x86_64                           126/153 
  Installing       : libssh-0.10.4-2.fc38.x86_64                        127/153 
  Installing       : libevent-2.1.12-8.fc38.x86_64                      128/153 
  Installing       : openldap-2.6.3-1.fc38.x86_64                       129/153 
  Installing       : libcurl-7.87.0-3.fc38.x86_64                       130/153 
  Installing       : elfutils-libs-0.188-3.fc38.x86_64                  131/153 
  Installing       : elfutils-debuginfod-client-0.188-3.fc38.x86_64     132/153 
  Installing       : binutils-gold-2.39-6.fc38.x86_64                   133/153 
  Installing       : binutils-2.39-6.fc38.x86_64                        134/153 
  Running scriptlet: binutils-2.39-6.fc38.x86_64                        134/153 
  Installing       : elfutils-0.188-3.fc38.x86_64                       135/153 
  Installing       : gdb-minimal-12.1-10.fc38.x86_64                    136/153 
  Installing       : debugedit-5.0-5.fc37.x86_64                        137/153 
  Installing       : rpm-build-libs-4.18.0-9.fc38.x86_64                138/153 
  Installing       : curl-7.87.0-3.fc38.x86_64                          139/153 
  Installing       : libarchive-3.6.1-3.fc38.x86_64                     140/153 
  Running scriptlet: rpm-4.18.0-9.fc38.x86_64                           141/153 
  Installing       : rpm-4.18.0-9.fc38.x86_64                           141/153 
  Installing       : efi-srpm-macros-5-6.fc37.noarch                    142/153 
  Installing       : lua-srpm-macros-1-7.fc37.noarch                    143/153 
  Installing       : rpmautospec-rpm-macros-0.3.1-1.fc38.noarch         144/153 
  Installing       : ansible-srpm-macros-1-8.1.fc38.noarch              145/153 
  Installing       : fonts-srpm-macros-1:2.0.5-10.fc38.noarch           146/153 
  Installing       : go-srpm-macros-3.2.0-1.fc38.noarch                 147/153 
  Installing       : python-srpm-macros-3.11-7.fc38.noarch              148/153 
  Installing       : redhat-rpm-config-245-1.fc38.noarch                149/153 
  Installing       : rpm-build-4.18.0-9.fc38.x86_64                     150/153 
  Installing       : util-linux-2.38.1-3.fc38.x86_64                    151/153 
  Installing       : which-2.21-36.fc38.x86_64                          152/153 
  Installing       : info-7.0.1-1.fc38.x86_64                           153/153 
  Running scriptlet: filesystem-3.18-2.fc37.x86_64                      153/153 
  Running scriptlet: ca-certificates-2022.2.54-5.fc37.noarch            153/153 
  Running scriptlet: authselect-libs-1.4.2-1.fc38.x86_64                153/153 
  Running scriptlet: rpm-4.18.0-9.fc38.x86_64                           153/153 
  Running scriptlet: info-7.0.1-1.fc38.x86_64                           153/153 
  Verifying        : audit-libs-3.0.9-3.fc38.x86_64                       1/153 
  Verifying        : crypto-policies-20221215-2.gita4c31a3.fc38.noarc     2/153 
  Verifying        : curl-7.87.0-3.fc38.x86_64                            3/153 
  Verifying        : file-5.42-5.fc38.x86_64                              4/153 
  Verifying        : file-libs-5.42-5.fc38.x86_64                         5/153 
  Verifying        : glibc-2.36.9000-23.fc38.x86_64                       6/153 
  Verifying        : glibc-common-2.36.9000-23.fc38.x86_64                7/153 
  Verifying        : glibc-gconv-extra-2.36.9000-23.fc38.x86_64           8/153 
  Verifying        : glibc-minimal-langpack-2.36.9000-23.fc38.x86_64      9/153 
  Verifying        : jansson-2.13.1-6.fc38.x86_64                        10/153 
  Verifying        : krb5-libs-1.20.1-7.fc38.x86_64                      11/153 
  Verifying        : libbrotli-1.0.9-11.fc38.x86_64                      12/153 
  Verifying        : libcap-ng-0.8.3-5.fc38.x86_64                       13/153 
  Verifying        : libcurl-7.87.0-3.fc38.x86_64                        14/153 
  Verifying        : libevent-2.1.12-8.fc38.x86_64                       15/153 
  Verifying        : libnghttp2-1.51.0-2.fc38.x86_64                     16/153 
  Verifying        : libpsl-0.21.2-2.fc38.x86_64                         17/153 
  Verifying        : libpwquality-1.4.5-2.fc38.x86_64                    18/153 
  Verifying        : libxml2-2.10.3-3.fc38.x86_64                        19/153 
  Verifying        : alternatives-1.21-1.fc38.x86_64                     20/153 
  Verifying        : ansible-srpm-macros-1-8.1.fc38.noarch               21/153 
  Verifying        : authselect-1.4.2-1.fc38.x86_64                      22/153 
  Verifying        : authselect-libs-1.4.2-1.fc38.x86_64                 23/153 
  Verifying        : basesystem-11-14.fc37.noarch                        24/153 
  Verifying        : bash-5.2.15-1.fc38.x86_64                           25/153 
  Verifying        : binutils-2.39-6.fc38.x86_64                         26/153 
  Verifying        : binutils-gold-2.39-6.fc38.x86_64                    27/153 
  Verifying        : bzip2-1.0.8-12.fc37.x86_64                          28/153 
  Verifying        : bzip2-libs-1.0.8-12.fc37.x86_64                     29/153 
  Verifying        : ca-certificates-2022.2.54-5.fc37.noarch             30/153 
  Verifying        : coreutils-9.1-10.fc38.x86_64                        31/153 
  Verifying        : coreutils-common-9.1-10.fc38.x86_64                 32/153 
  Verifying        : cpio-2.13-13.fc38.x86_64                            33/153 
  Verifying        : cracklib-2.9.7-30.fc38.x86_64                       34/153 
  Verifying        : cyrus-sasl-lib-2.1.28-8.fc38.x86_64                 35/153 
  Verifying        : debugedit-5.0-5.fc37.x86_64                         36/153 
  Verifying        : diffutils-3.9-1.fc38.x86_64                         37/153 
  Verifying        : dwz-0.15-1.fc38.x86_64                              38/153 
  Verifying        : ed-1.19-1.fc38.x86_64                               39/153 
  Verifying        : efi-srpm-macros-5-6.fc37.noarch                     40/153 
  Verifying        : elfutils-0.188-3.fc38.x86_64                        41/153 
  Verifying        : elfutils-debuginfod-client-0.188-3.fc38.x86_64      42/153 
  Verifying        : elfutils-default-yama-scope-0.188-3.fc38.noarch     43/153 
  Verifying        : elfutils-libelf-0.188-3.fc38.x86_64                 44/153 
  Verifying        : elfutils-libs-0.188-3.fc38.x86_64                   45/153 
  Verifying        : fedora-gpg-keys-38-0.3.noarch                       46/153 
  Verifying        : fedora-release-38-0.15.noarch                       47/153 
  Verifying        : fedora-release-common-38-0.15.noarch                48/153 
  Verifying        : fedora-release-identity-basic-38-0.15.noarch        49/153 
  Verifying        : fedora-repos-38-0.3.noarch                          50/153 
  Verifying        : fedora-repos-rawhide-38-0.3.noarch                  51/153 
  Verifying        : filesystem-3.18-2.fc37.x86_64                       52/153 
  Verifying        : findutils-1:4.9.0-2.fc37.x86_64                     53/153 
  Verifying        : fonts-srpm-macros-1:2.0.5-10.fc38.noarch            54/153 
  Verifying        : fpc-srpm-macros-1.3-6.fc37.noarch                   55/153 
  Verifying        : gawk-5.1.1-4.fc37.x86_64                            56/153 
  Verifying        : gdb-minimal-12.1-10.fc38.x86_64                     57/153 
  Verifying        : gdbm-libs-1:1.23-2.fc37.x86_64                      58/153 
  Verifying        : ghc-srpm-macros-1.5.0-7.fc37.noarch                 59/153 
  Verifying        : gmp-1:6.2.1-3.fc37.x86_64                           60/153 
  Verifying        : gnat-srpm-macros-5-1.fc38.noarch                    61/153 
  Verifying        : go-srpm-macros-3.2.0-1.fc38.noarch                  62/153 
  Verifying        : grep-3.8-2.fc38.x86_64                              63/153 
  Verifying        : gzip-1.12-2.fc37.x86_64                             64/153 
  Verifying        : info-7.0.1-1.fc38.x86_64                            65/153 
  Verifying        : kernel-srpm-macros-1.0-15.fc37.noarch               66/153 
  Verifying        : keyutils-libs-1.6.1-5.fc37.x86_64                   67/153 
  Verifying        : libacl-2.3.1-4.fc37.x86_64                          68/153 
  Verifying        : libarchive-3.6.1-3.fc38.x86_64                      69/153 
  Verifying        : libattr-2.5.1-5.fc37.x86_64                         70/153 
  Verifying        : libblkid-2.38.1-3.fc38.x86_64                       71/153 
  Verifying        : libcap-2.48-5.fc37.x86_64                           72/153 
  Verifying        : libcom_err-1.46.5-3.fc37.x86_64                     73/153 
  Verifying        : libdb-5.3.28-54.fc38.x86_64                         74/153 
  Verifying        : libeconf-0.4.0-4.fc37.x86_64                        75/153 
  Verifying        : libfdisk-2.38.1-3.fc38.x86_64                       76/153 
  Verifying        : libffi-3.4.4-1.fc38.x86_64                          77/153 
  Verifying        : libgcc-13.0.1-0.1.fc38.x86_64                       78/153 
  Verifying        : libgomp-13.0.1-0.1.fc38.x86_64                      79/153 
  Verifying        : libidn2-2.3.4-1.fc38.x86_64                         80/153 
  Verifying        : libmount-2.38.1-3.fc38.x86_64                       81/153 
  Verifying        : libnsl2-2.0.0-4.fc37.x86_64                         82/153 
  Verifying        : libpkgconf-1.8.0-3.fc37.x86_64                      83/153 
  Verifying        : libselinux-3.5-0.rc1.1.fc38.1.x86_64                84/153 
  Verifying        : libsemanage-3.5-0.rc1.1.fc38.x86_64                 85/153 
  Verifying        : libsepol-3.5-0.rc1.1.fc38.x86_64                    86/153 
  Verifying        : libsigsegv-2.14-3.fc37.x86_64                       87/153 
  Verifying        : libsmartcols-2.38.1-3.fc38.x86_64                   88/153 
  Verifying        : libssh-0.10.4-2.fc38.x86_64                         89/153 
  Verifying        : libssh-config-0.10.4-2.fc38.noarch                  90/153 
  Verifying        : libstdc++-13.0.1-0.1.fc38.x86_64                    91/153 
  Verifying        : libtasn1-4.19.0-1.fc38.x86_64                       92/153 
  Verifying        : libtirpc-1.3.3-0.fc37.x86_64                        93/153 
  Verifying        : libunistring-1.0-2.fc37.x86_64                      94/153 
  Verifying        : libutempter-1.2.1-7.fc37.x86_64                     95/153 
  Verifying        : libuuid-2.38.1-3.fc38.x86_64                        96/153 
  Verifying        : libverto-0.3.2-4.fc37.x86_64                        97/153 
  Verifying        : libxcrypt-4.4.33-5.fc38.x86_64                      98/153 
  Verifying        : libzstd-1.5.2-3.fc37.x86_64                         99/153 
  Verifying        : lua-libs-5.4.4-7.fc38.x86_64                       100/153 
  Verifying        : lua-srpm-macros-1-7.fc37.noarch                    101/153 
  Verifying        : lz4-libs-1.9.4-1.fc38.x86_64                       102/153 
  Verifying        : mpfr-4.1.1-2.fc38.x86_64                           103/153 
  Verifying        : ncurses-base-6.4-2.20230114.fc38.noarch            104/153 
  Verifying        : ncurses-libs-6.4-2.20230114.fc38.x86_64            105/153 
  Verifying        : nettle-3.8-2.fc37.x86_64                           106/153 
  Verifying        : nim-srpm-macros-3-7.fc37.noarch                    107/153 
  Verifying        : ocaml-srpm-macros-7-2.fc37.noarch                  108/153 
  Verifying        : openblas-srpm-macros-2-12.fc37.noarch              109/153 
  Verifying        : openldap-2.6.3-1.fc38.x86_64                       110/153 
  Verifying        : openssl-libs-1:3.0.7-3.fc38.x86_64                 111/153 
  Verifying        : p11-kit-0.24.1-5.fc38.x86_64                       112/153 
  Verifying        : p11-kit-trust-0.24.1-5.fc38.x86_64                 113/153 
  Verifying        : package-notes-srpm-macros-0.5-6.fc38.noarch        114/153 
  Verifying        : pam-1.5.2-15.fc38.x86_64                           115/153 
  Verifying        : pam-libs-1.5.2-15.fc38.x86_64                      116/153 
  Verifying        : patch-2.7.6-17.fc37.x86_64                         117/153 
  Verifying        : pcre2-10.42-1.fc38.x86_64                          118/153 
  Verifying        : pcre2-syntax-10.42-1.fc38.noarch                   119/153 
  Verifying        : perl-srpm-macros-1-47.fc38.noarch                  120/153 
  Verifying        : pkgconf-1.8.0-3.fc37.x86_64                        121/153 
  Verifying        : pkgconf-m4-1.8.0-3.fc37.noarch                     122/153 
  Verifying        : pkgconf-pkg-config-1.8.0-3.fc37.x86_64             123/153 
  Verifying        : popt-1.19-1.fc38.x86_64                            124/153 
  Verifying        : publicsuffix-list-dafsa-20221208-1.fc38.noarch     125/153 
  Verifying        : python-srpm-macros-3.11-7.fc38.noarch              126/153 
  Verifying        : qt5-srpm-macros-5.15.8-1.fc38.noarch               127/153 
  Verifying        : readline-8.2-2.fc38.x86_64                         128/153 
  Verifying        : redhat-rpm-config-245-1.fc38.noarch                129/153 
  Verifying        : rpm-4.18.0-9.fc38.x86_64                           130/153 
  Verifying        : rpm-build-4.18.0-9.fc38.x86_64                     131/153 
  Verifying        : rpm-build-libs-4.18.0-9.fc38.x86_64                132/153 
  Verifying        : rpm-libs-4.18.0-9.fc38.x86_64                      133/153 
  Verifying        : rpm-sequoia-1.2.0-1.fc38.x86_64                    134/153 
  Verifying        : rpmautospec-rpm-macros-0.3.1-1.fc38.noarch         135/153 
  Verifying        : rust-srpm-macros-23-1.fc38.noarch                  136/153 
  Verifying        : sed-4.8-11.fc37.x86_64                             137/153 
  Verifying        : setup-2.14.3-1.fc38.noarch                         138/153 
  Verifying        : shadow-utils-2:4.13-3.fc38.x86_64                  139/153 
  Verifying        : sqlite-libs-3.40.1-1.fc38.x86_64                   140/153 
  Verifying        : systemd-libs-252.4-598.fc38.x86_64                 141/153 
  Verifying        : tar-2:1.34-5.fc38.x86_64                           142/153 
  Verifying        : tzdata-2022g-1.fc38.noarch                         143/153 
  Verifying        : unzip-6.0-58.fc38.x86_64                           144/153 
  Verifying        : util-linux-2.38.1-3.fc38.x86_64                    145/153 
  Verifying        : util-linux-core-2.38.1-3.fc38.x86_64               146/153 
  Verifying        : which-2.21-36.fc38.x86_64                          147/153 
  Verifying        : xxhash-libs-0.8.1-3.fc37.x86_64                    148/153 
  Verifying        : xz-5.2.9-1.fc38.x86_64                             149/153 
  Verifying        : xz-libs-5.2.9-1.fc38.x86_64                        150/153 
  Verifying        : zip-3.0-35.fc38.x86_64                             151/153 
  Verifying        : zlib-1.2.13-2.fc38.x86_64                          152/153 
  Verifying        : zstd-1.5.2-3.fc37.x86_64                           153/153 

Installed:
  alternatives-1.21-1.fc38.x86_64                                               
  ansible-srpm-macros-1-8.1.fc38.noarch                                         
  audit-libs-3.0.9-3.fc38.x86_64                                                
  authselect-1.4.2-1.fc38.x86_64                                                
  authselect-libs-1.4.2-1.fc38.x86_64                                           
  basesystem-11-14.fc37.noarch                                                  
  bash-5.2.15-1.fc38.x86_64                                                     
  binutils-2.39-6.fc38.x86_64                                                   
  binutils-gold-2.39-6.fc38.x86_64                                              
  bzip2-1.0.8-12.fc37.x86_64                                                    
  bzip2-libs-1.0.8-12.fc37.x86_64                                               
  ca-certificates-2022.2.54-5.fc37.noarch                                       
  coreutils-9.1-10.fc38.x86_64                                                  
  coreutils-common-9.1-10.fc38.x86_64                                           
  cpio-2.13-13.fc38.x86_64                                                      
  cracklib-2.9.7-30.fc38.x86_64                                                 
  crypto-policies-20221215-2.gita4c31a3.fc38.noarch                             
  curl-7.87.0-3.fc38.x86_64                                                     
  cyrus-sasl-lib-2.1.28-8.fc38.x86_64                                           
  debugedit-5.0-5.fc37.x86_64                                                   
  diffutils-3.9-1.fc38.x86_64                                                   
  dwz-0.15-1.fc38.x86_64                                                        
  ed-1.19-1.fc38.x86_64                                                         
  efi-srpm-macros-5-6.fc37.noarch                                               
  elfutils-0.188-3.fc38.x86_64                                                  
  elfutils-debuginfod-client-0.188-3.fc38.x86_64                                
  elfutils-default-yama-scope-0.188-3.fc38.noarch                               
  elfutils-libelf-0.188-3.fc38.x86_64                                           
  elfutils-libs-0.188-3.fc38.x86_64                                             
  fedora-gpg-keys-38-0.3.noarch                                                 
  fedora-release-38-0.15.noarch                                                 
  fedora-release-common-38-0.15.noarch                                          
  fedora-release-identity-basic-38-0.15.noarch                                  
  fedora-repos-38-0.3.noarch                                                    
  fedora-repos-rawhide-38-0.3.noarch                                            
  file-5.42-5.fc38.x86_64                                                       
  file-libs-5.42-5.fc38.x86_64                                                  
  filesystem-3.18-2.fc37.x86_64                                                 
  findutils-1:4.9.0-2.fc37.x86_64                                               
  fonts-srpm-macros-1:2.0.5-10.fc38.noarch                                      
  fpc-srpm-macros-1.3-6.fc37.noarch                                             
  gawk-5.1.1-4.fc37.x86_64                                                      
  gdb-minimal-12.1-10.fc38.x86_64                                               
  gdbm-libs-1:1.23-2.fc37.x86_64                                                
  ghc-srpm-macros-1.5.0-7.fc37.noarch                                           
  glibc-2.36.9000-23.fc38.x86_64                                                
  glibc-common-2.36.9000-23.fc38.x86_64                                         
  glibc-gconv-extra-2.36.9000-23.fc38.x86_64                                    
  glibc-minimal-langpack-2.36.9000-23.fc38.x86_64                               
  gmp-1:6.2.1-3.fc37.x86_64                                                     
  gnat-srpm-macros-5-1.fc38.noarch                                              
  go-srpm-macros-3.2.0-1.fc38.noarch                                            
  grep-3.8-2.fc38.x86_64                                                        
  gzip-1.12-2.fc37.x86_64                                                       
  info-7.0.1-1.fc38.x86_64                                                      
  jansson-2.13.1-6.fc38.x86_64                                                  
  kernel-srpm-macros-1.0-15.fc37.noarch                                         
  keyutils-libs-1.6.1-5.fc37.x86_64                                             
  krb5-libs-1.20.1-7.fc38.x86_64                                                
  libacl-2.3.1-4.fc37.x86_64                                                    
  libarchive-3.6.1-3.fc38.x86_64                                                
  libattr-2.5.1-5.fc37.x86_64                                                   
  libblkid-2.38.1-3.fc38.x86_64                                                 
  libbrotli-1.0.9-11.fc38.x86_64                                                
  libcap-2.48-5.fc37.x86_64                                                     
  libcap-ng-0.8.3-5.fc38.x86_64                                                 
  libcom_err-1.46.5-3.fc37.x86_64                                               
  libcurl-7.87.0-3.fc38.x86_64                                                  
  libdb-5.3.28-54.fc38.x86_64                                                   
  libeconf-0.4.0-4.fc37.x86_64                                                  
  libevent-2.1.12-8.fc38.x86_64                                                 
  libfdisk-2.38.1-3.fc38.x86_64                                                 
  libffi-3.4.4-1.fc38.x86_64                                                    
  libgcc-13.0.1-0.1.fc38.x86_64                                                 
  libgomp-13.0.1-0.1.fc38.x86_64                                                
  libidn2-2.3.4-1.fc38.x86_64                                                   
  libmount-2.38.1-3.fc38.x86_64                                                 
  libnghttp2-1.51.0-2.fc38.x86_64                                               
  libnsl2-2.0.0-4.fc37.x86_64                                                   
  libpkgconf-1.8.0-3.fc37.x86_64                                                
  libpsl-0.21.2-2.fc38.x86_64                                                   
  libpwquality-1.4.5-2.fc38.x86_64                                              
  libselinux-3.5-0.rc1.1.fc38.1.x86_64                                          
  libsemanage-3.5-0.rc1.1.fc38.x86_64                                           
  libsepol-3.5-0.rc1.1.fc38.x86_64                                              
  libsigsegv-2.14-3.fc37.x86_64                                                 
  libsmartcols-2.38.1-3.fc38.x86_64                                             
  libssh-0.10.4-2.fc38.x86_64                                                   
  libssh-config-0.10.4-2.fc38.noarch                                            
  libstdc++-13.0.1-0.1.fc38.x86_64                                              
  libtasn1-4.19.0-1.fc38.x86_64                                                 
  libtirpc-1.3.3-0.fc37.x86_64                                                  
  libunistring-1.0-2.fc37.x86_64                                                
  libutempter-1.2.1-7.fc37.x86_64                                               
  libuuid-2.38.1-3.fc38.x86_64                                                  
  libverto-0.3.2-4.fc37.x86_64                                                  
  libxcrypt-4.4.33-5.fc38.x86_64                                                
  libxml2-2.10.3-3.fc38.x86_64                                                  
  libzstd-1.5.2-3.fc37.x86_64                                                   
  lua-libs-5.4.4-7.fc38.x86_64                                                  
  lua-srpm-macros-1-7.fc37.noarch                                               
  lz4-libs-1.9.4-1.fc38.x86_64                                                  
  mpfr-4.1.1-2.fc38.x86_64                                                      
  ncurses-base-6.4-2.20230114.fc38.noarch                                       
  ncurses-libs-6.4-2.20230114.fc38.x86_64                                       
  nettle-3.8-2.fc37.x86_64                                                      
  nim-srpm-macros-3-7.fc37.noarch                                               
  ocaml-srpm-macros-7-2.fc37.noarch                                             
  openblas-srpm-macros-2-12.fc37.noarch                                         
  openldap-2.6.3-1.fc38.x86_64                                                  
  openssl-libs-1:3.0.7-3.fc38.x86_64                                            
  p11-kit-0.24.1-5.fc38.x86_64                                                  
  p11-kit-trust-0.24.1-5.fc38.x86_64                                            
  package-notes-srpm-macros-0.5-6.fc38.noarch                                   
  pam-1.5.2-15.fc38.x86_64                                                      
  pam-libs-1.5.2-15.fc38.x86_64                                                 
  patch-2.7.6-17.fc37.x86_64                                                    
  pcre2-10.42-1.fc38.x86_64                                                     
  pcre2-syntax-10.42-1.fc38.noarch                                              
  perl-srpm-macros-1-47.fc38.noarch                                             
  pkgconf-1.8.0-3.fc37.x86_64                                                   
  pkgconf-m4-1.8.0-3.fc37.noarch                                                
  pkgconf-pkg-config-1.8.0-3.fc37.x86_64                                        
  popt-1.19-1.fc38.x86_64                                                       
  publicsuffix-list-dafsa-20221208-1.fc38.noarch                                
  python-srpm-macros-3.11-7.fc38.noarch                                         
  qt5-srpm-macros-5.15.8-1.fc38.noarch                                          
  readline-8.2-2.fc38.x86_64                                                    
  redhat-rpm-config-245-1.fc38.noarch                                           
  rpm-4.18.0-9.fc38.x86_64                                                      
  rpm-build-4.18.0-9.fc38.x86_64                                                
  rpm-build-libs-4.18.0-9.fc38.x86_64                                           
  rpm-libs-4.18.0-9.fc38.x86_64                                                 
  rpm-sequoia-1.2.0-1.fc38.x86_64                                               
  rpmautospec-rpm-macros-0.3.1-1.fc38.noarch                                    
  rust-srpm-macros-23-1.fc38.noarch                                             
  sed-4.8-11.fc37.x86_64                                                        
  setup-2.14.3-1.fc38.noarch                                                    
  shadow-utils-2:4.13-3.fc38.x86_64                                             
  sqlite-libs-3.40.1-1.fc38.x86_64                                              
  systemd-libs-252.4-598.fc38.x86_64                                            
  tar-2:1.34-5.fc38.x86_64                                                      
  tzdata-2022g-1.fc38.noarch                                                    
  unzip-6.0-58.fc38.x86_64                                                      
  util-linux-2.38.1-3.fc38.x86_64                                               
  util-linux-core-2.38.1-3.fc38.x86_64                                          
  which-2.21-36.fc38.x86_64                                                     
  xxhash-libs-0.8.1-3.fc37.x86_64                                               
  xz-5.2.9-1.fc38.x86_64                                                        
  xz-libs-5.2.9-1.fc38.x86_64                                                   
  zip-3.0-35.fc38.x86_64                                                        
  zlib-1.2.13-2.fc38.x86_64                                                     
  zstd-1.5.2-3.fc37.x86_64                                                      

Complete!
Finish: dnf install
Start: creating root cache
Finish: creating root cache
Finish: chroot init
INFO: Installed packages:
INFO: nettle-3.8-2.fc37.x86_64
nim-srpm-macros-3-7.fc37.noarch
gpg-pubkey-5323552a-6112bcdc
systemd-libs-252.4-598.fc38.x86_64
glibc-common-2.36.9000-23.fc38.x86_64
authselect-libs-1.4.2-1.fc38.x86_64
cracklib-2.9.7-30.fc38.x86_64
file-5.42-5.fc38.x86_64
libmount-2.38.1-3.fc38.x86_64
gdbm-libs-1.23-2.fc37.x86_64
libidn2-2.3.4-1.fc38.x86_64
libblkid-2.38.1-3.fc38.x86_64
libunistring-1.0-2.fc37.x86_64
lua-srpm-macros-1-7.fc37.noarch
fpc-srpm-macros-1.3-6.fc37.noarch
efi-srpm-macros-5-6.fc37.noarch
libattr-2.5.1-5.fc37.x86_64
grep-3.8-2.fc38.x86_64
bash-5.2.15-1.fc38.x86_64
libnsl2-2.0.0-4.fc37.x86_64
qt5-srpm-macros-5.15.8-1.fc38.noarch
libevent-2.1.12-8.fc38.x86_64
libtasn1-4.19.0-1.fc38.x86_64
gnat-srpm-macros-5-1.fc38.noarch
libpkgconf-1.8.0-3.fc37.x86_64
perl-srpm-macros-1-47.fc38.noarch
libdb-5.3.28-54.fc38.x86_64
ncurses-base-6.4-2.20230114.fc38.noarch
unzip-6.0-58.fc38.x86_64
cpio-2.13-13.fc38.x86_64
which-2.21-36.fc38.x86_64
redhat-rpm-config-245-1.fc38.noarch
fonts-srpm-macros-2.0.5-10.fc38.noarch
fedora-repos-rawhide-38-0.3.noarch
libxml2-2.10.3-3.fc38.x86_64
file-libs-5.42-5.fc38.x86_64
ncurses-libs-6.4-2.20230114.fc38.x86_64
libssh-0.10.4-2.fc38.x86_64
libuuid-2.38.1-3.fc38.x86_64
libbrotli-1.0.9-11.fc38.x86_64
pkgconf-m4-1.8.0-3.fc37.noarch
libstdc++-13.0.1-0.1.fc38.x86_64
setup-2.14.3-1.fc38.noarch
libeconf-0.4.0-4.fc37.x86_64
libpsl-0.21.2-2.fc38.x86_64
keyutils-libs-1.6.1-5.fc37.x86_64
authselect-1.4.2-1.fc38.x86_64
glibc-2.36.9000-23.fc38.x86_64
elfutils-debuginfod-client-0.188-3.fc38.x86_64
pam-1.5.2-15.fc38.x86_64
libsmartcols-2.38.1-3.fc38.x86_64
tzdata-2022g-1.fc38.noarch
gmp-6.2.1-3.fc37.x86_64
ocaml-srpm-macros-7-2.fc37.noarch
rust-srpm-macros-23-1.fc38.noarch
binutils-gold-2.39-6.fc38.x86_64
p11-kit-trust-0.24.1-5.fc38.x86_64
libutempter-1.2.1-7.fc37.x86_64
libtirpc-1.3.3-0.fc37.x86_64
zlib-1.2.13-2.fc38.x86_64
lua-libs-5.4.4-7.fc38.x86_64
fedora-gpg-keys-38-0.3.noarch
libffi-3.4.4-1.fc38.x86_64
zip-3.0-35.fc38.x86_64
p11-kit-0.24.1-5.fc38.x86_64
fedora-repos-38-0.3.noarch
pkgconf-1.8.0-3.fc37.x86_64
gawk-5.1.1-4.fc37.x86_64
rpm-4.18.0-9.fc38.x86_64
ghc-srpm-macros-1.5.0-7.fc37.noarch
libverto-0.3.2-4.fc37.x86_64
gdb-minimal-12.1-10.fc38.x86_64
kernel-srpm-macros-1.0-15.fc37.noarch
ansible-srpm-macros-1-8.1.fc38.noarch
libsemanage-3.5-0.rc1.1.fc38.x86_64
openblas-srpm-macros-2-12.fc37.noarch
sed-4.8-11.fc37.x86_64
glibc-gconv-extra-2.36.9000-23.fc38.x86_64
libcom_err-1.46.5-3.fc37.x86_64
go-srpm-macros-3.2.0-1.fc38.noarch
gzip-1.12-2.fc37.x86_64
coreutils-9.1-10.fc38.x86_64
libarchive-3.6.1-3.fc38.x86_64
shadow-utils-4.13-3.fc38.x86_64
libsepol-3.5-0.rc1.1.fc38.x86_64
util-linux-core-2.38.1-3.fc38.x86_64
pam-libs-1.5.2-15.fc38.x86_64
zstd-1.5.2-3.fc37.x86_64
audit-libs-3.0.9-3.fc38.x86_64
mpfr-4.1.1-2.fc38.x86_64
xxhash-libs-0.8.1-3.fc37.x86_64
libsigsegv-2.14-3.fc37.x86_64
sqlite-libs-3.40.1-1.fc38.x86_64
rpm-sequoia-1.2.0-1.fc38.x86_64
xz-libs-5.2.9-1.fc38.x86_64
bzip2-libs-1.0.8-12.fc37.x86_64
ca-certificates-2022.2.54-5.fc37.noarch
libcap-2.48-5.fc37.x86_64
openldap-2.6.3-1.fc38.x86_64
libssh-config-0.10.4-2.fc38.noarch
libselinux-3.5-0.rc1.1.fc38.1.x86_64
libgcc-13.0.1-0.1.fc38.x86_64
alternatives-1.21-1.fc38.x86_64
elfutils-libelf-0.188-3.fc38.x86_64
libpwquality-1.4.5-2.fc38.x86_64
libzstd-1.5.2-3.fc37.x86_64
libacl-2.3.1-4.fc37.x86_64
curl-7.87.0-3.fc38.x86_64
fedora-release-common-38-0.15.noarch
gpg-pubkey-eb10b464-6202d9c6
filesystem-3.18-2.fc37.x86_64
package-notes-srpm-macros-0.5-6.fc38.noarch
fedora-release-identity-basic-38-0.15.noarch
debugedit-5.0-5.fc37.x86_64
rpmautospec-rpm-macros-0.3.1-1.fc38.noarch
rpm-libs-4.18.0-9.fc38.x86_64
ed-1.19-1.fc38.x86_64
findutils-4.9.0-2.fc37.x86_64
dwz-0.15-1.fc38.x86_64
libxcrypt-4.4.33-5.fc38.x86_64
cyrus-sasl-lib-2.1.28-8.fc38.x86_64
info-7.0.1-1.fc38.x86_64
popt-1.19-1.fc38.x86_64
binutils-2.39-6.fc38.x86_64
crypto-policies-20221215-2.gita4c31a3.fc38.noarch
elfutils-libs-0.188-3.fc38.x86_64
elfutils-0.188-3.fc38.x86_64
rpm-build-4.18.0-9.fc38.x86_64
patch-2.7.6-17.fc37.x86_64
python-srpm-macros-3.11-7.fc38.noarch
libcurl-7.87.0-3.fc38.x86_64
diffutils-3.9-1.fc38.x86_64
lz4-libs-1.9.4-1.fc38.x86_64
coreutils-common-9.1-10.fc38.x86_64
libnghttp2-1.51.0-2.fc38.x86_64
libgomp-13.0.1-0.1.fc38.x86_64
pcre2-syntax-10.42-1.fc38.noarch
elfutils-default-yama-scope-0.188-3.fc38.noarch
util-linux-2.38.1-3.fc38.x86_64
libcap-ng-0.8.3-5.fc38.x86_64
glibc-minimal-langpack-2.36.9000-23.fc38.x86_64
pcre2-10.42-1.fc38.x86_64
basesystem-11-14.fc37.noarch
bzip2-1.0.8-12.fc37.x86_64
libfdisk-2.38.1-3.fc38.x86_64
fedora-release-38-0.15.noarch
krb5-libs-1.20.1-7.fc38.x86_64
rpm-build-libs-4.18.0-9.fc38.x86_64
xz-5.2.9-1.fc38.x86_64
openssl-libs-3.0.7-3.fc38.x86_64
publicsuffix-list-dafsa-20221208-1.fc38.noarch
pkgconf-pkg-config-1.8.0-3.fc37.x86_64
jansson-2.13.1-6.fc38.x86_64
readline-8.2-2.fc38.x86_64
tar-1.34-5.fc38.x86_64
Start: buildsrpm
Start: rpmbuild -bs
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1674172800
Wrote: /builddir/build/SRPMS/pymol-2.5.0-6.fc38.src.rpm
Finish: rpmbuild -bs
cp: ‘var/lib/mock/fedora-rawhide-x86_64-1674292270.246865/root/var/log’: No such file or directory
INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-x86_64-1674292270.246865/root/var/log/dnf.rpm.log
/var/lib/mock/fedora-rawhide-x86_64-1674292270.246865/root/var/log/dnf.librepo.log
/var/lib/mock/fedora-rawhide-x86_64-1674292270.246865/root/var/log/dnf.log
Finish: buildsrpm
INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-6km37st1/pymol/pymol.spec) Config(child) 1 minutes 19 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
Finish: run
Running (timeout=18000): unbuffer mock --rebuild /var/lib/copr-rpmbuild/results/pymol-2.5.0-6.fc38.src.rpm --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1674292270.246865 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
INFO: mock.py version 3.5 starting (python version = 3.11.0, NVR = mock-3.5-1.fc37)...
Start(bootstrap): init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish(bootstrap): init plugins
Start: init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish: init plugins
INFO: Signal handler active
Start: run
INFO: Start(/var/lib/copr-rpmbuild/results/pymol-2.5.0-6.fc38.src.rpm)  Config(fedora-rawhide-x86_64)
Start: clean chroot
Finish: clean chroot
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1674292270.246865/root.
INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1674292270.246865/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
INFO: enabled HW Info plugin
Mock Version: 3.5
INFO: Mock Version: 3.5
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1674292270.246865/root.
INFO: calling preinit hooks
INFO: enabled root cache
Start: unpacking root cache
Finish: unpacking root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
Mock Version: 3.5
INFO: Mock Version: 3.5
Start: dnf update
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Copr repository                                  15 kB/s | 3.7 kB     00:00    
Copr repository                                  36 MB/s |  10 MB     00:00    
fedora                                           30 kB/s |  13 kB     00:00    
Dependencies resolved.
Nothing to do.
Complete!
Finish: dnf update
Finish: chroot init
Start: build phase for pymol-2.5.0-6.fc38.src.rpm
Start: build setup for pymol-2.5.0-6.fc38.src.rpm
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1674172800
Wrote: /builddir/build/SRPMS/pymol-2.5.0-6.fc38.src.rpm
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Copr repository                                 9.2 kB/s | 3.7 kB     00:00    
fedora                                           49 kB/s |  13 kB     00:00    
Dependencies resolved.
========================================================================================
 Package                       Arch    Version                          Repo        Size
========================================================================================
Installing:
 catch-devel                   x86_64  2.13.8-3.fc37                    fedora     205 k
 desktop-file-utils            x86_64  0.26-7.fc37                      fedora      72 k
 freeglut-devel                x86_64  3.4.0-1.fc38                     fedora     949 k
 freetype-devel                x86_64  2.12.1-3.fc37                    fedora     895 k
 gcc-c++                       x86_64  13.0.1-0.1.fc38                  fedora      13 M
 glew-devel                    x86_64  2.2.0-3.fc37                     fedora     222 k
 glm-devel                     noarch  0.9.9.8-5.fc38                   fedora     302 k
 libappstream-glib             x86_64  0.8.2-1.fc38                     fedora     404 k
 libpng-devel                  x86_64  2:1.6.37-13.fc37                 fedora     290 k
 libxml2-devel                 x86_64  2.10.3-3.fc38                    copr_base  502 k
 mesa-libGL-devel              x86_64  22.3.3-2.fc38                    copr_base   36 k
 mmtf-cpp-devel                x86_64  1.1.0-1.fc38                     fedora      30 k
 msgpack-devel                 x86_64  3.1.0-10.fc37                    fedora     428 k
 netcdf-devel                  x86_64  4.9.0-4.fc38                     fedora      99 k
 python3-devel                 x86_64  3.11.1-3.fc38                    fedora     269 k
 python3-mmtf                  noarch  1.1.2-18.fc37                    fedora      77 k
 python3-numpy                 x86_64  1:1.23.5-2.fc38                  copr_base  7.3 M
 python3-qt5-devel             x86_64  5.15.6-10.fc38                   fedora     523 k
 python3-setuptools            noarch  65.5.1-1.fc38                    fedora     1.7 M
 python3-simplejson            x86_64  3.18.1-1.fc38                    fedora     329 k
Installing dependencies:
 alsa-lib                      x86_64  1.2.8-2.fc38                     fedora     517 k
 annobin-docs                  noarch  11.06-2.fc38                     fedora      93 k
 annobin-plugin-gcc            x86_64  11.06-2.fc38                     fedora     890 k
 avahi-libs                    x86_64  0.8-19.fc38                      fedora      67 k
 blosc                         x86_64  1.21.2-1.fc38                    fedora      54 k
 bluez-libs                    x86_64  5.66-4.fc38                      fedora      84 k
 brotli                        x86_64  1.0.9-11.fc38                    copr_base  316 k
 brotli-devel                  x86_64  1.0.9-11.fc38                    copr_base   32 k
 bzip2-devel                   x86_64  1.0.8-12.fc37                    fedora     214 k
 cairo                         x86_64  1.17.6-2.fc37                    fedora     676 k
 cairo-gobject                 x86_64  1.17.6-2.fc37                    fedora      18 k
 cdparanoia-libs               x86_64  10.2-40.fc37                     fedora      54 k
 cmake                         x86_64  3.25.2-1.fc38                    copr_base  6.9 M
 cmake-data                    noarch  3.25.2-1.fc38                    copr_base  1.7 M
 cmake-filesystem              x86_64  3.25.2-1.fc38                    copr_base   17 k
 cmake-rpm-macros              noarch  3.25.2-1.fc38                    copr_base   17 k
 cpp                           x86_64  13.0.1-0.1.fc38                  fedora      11 M
 crypto-policies-scripts       noarch  20221215-2.gita4c31a3.fc38       copr_base  104 k
 cups-libs                     x86_64  1:2.4.2-5.fc38                   fedora     268 k
 dbus                          x86_64  1:1.14.4-1.fc38                  fedora     7.8 k
 dbus-broker                   x86_64  32-1.fc37                        fedora     175 k
 dbus-common                   noarch  1:1.14.4-1.fc38                  fedora      15 k
 dbus-libs                     x86_64  1:1.14.4-1.fc38                  fedora     156 k
 emacs-filesystem              noarch  1:28.2-1.fc38                    fedora     7.1 k
 expat                         x86_64  2.5.0-1.fc38                     fedora     110 k
 fdk-aac-free                  x86_64  2.0.0-9.fc37                     fedora     332 k
 flac-libs                     x86_64  1.4.2-1.fc38                     fedora     256 k
 flexiblas                     x86_64  3.3.0-1.fc38                     fedora      32 k
 flexiblas-netlib              x86_64  3.3.0-1.fc38                     fedora     3.2 M
 flexiblas-openblas-openmp     x86_64  3.3.0-1.fc38                     fedora      17 k
 fontconfig                    x86_64  2.14.1-2.fc38                    fedora     294 k
 fonts-filesystem              noarch  1:2.0.5-10.fc38                  fedora     8.0 k
 freeglut                      x86_64  3.4.0-1.fc38                     fedora     154 k
 freetype                      x86_64  2.12.1-3.fc37                    fedora     407 k
 fribidi                       x86_64  1.0.12-2.fc37                    fedora      89 k
 gc                            x86_64  8.2.2-1.fc38                     fedora     110 k
 gcc                           x86_64  13.0.1-0.1.fc38                  fedora      34 M
 gcc-gfortran                  x86_64  13.0.1-0.1.fc38                  fedora      12 M
 gcc-plugin-annobin            x86_64  13.0.1-0.1.fc38                  fedora      30 k
 gdk-pixbuf2                   x86_64  2.42.10-1.fc38                   fedora     485 k
 gl-manpages                   noarch  1.1-25.20190306.fc37             fedora     1.2 M
 glib2                         x86_64  2.74.1-3.fc38                    copr_base  2.7 M
 glib2-devel                   x86_64  2.74.1-3.fc38                    copr_base  516 k
 glibc-devel                   x86_64  2.36.9000-23.fc38                copr_base   46 k
 glibc-headers-x86             noarch  2.36.9000-23.fc38                copr_base  454 k
 glx-utils                     x86_64  8.4.0-14.20210504git0f9e7d9.fc37 fedora      41 k
 gnutls                        x86_64  3.7.8-11.fc38                    copr_base  1.1 M
 google-noto-fonts-common      noarch  20201206^1.git0c78c8329-9.fc38   fedora      18 k
 google-noto-sans-vf-fonts     noarch  20201206^1.git0c78c8329-9.fc38   fedora     729 k
 graphene                      x86_64  1.10.6-4.fc37                    fedora      62 k
 graphite2                     x86_64  1.3.14-11.fc38                   copr_base   95 k
 graphite2-devel               x86_64  1.3.14-11.fc38                   copr_base   21 k
 groff-base                    x86_64  1.22.4-10.fc37                   fedora     1.1 M
 gsm                           x86_64  1.0.22-1.fc37                    fedora      35 k
 gssdp                         x86_64  1.6.2-1.fc38                     fedora      58 k
 gstreamer1                    x86_64  1.20.5-1.fc38                    fedora     1.4 M
 gstreamer1-plugins-bad-free   x86_64  1.20.5-2.fc38                    copr_base  2.8 M
 gstreamer1-plugins-base       x86_64  1.20.5-1.fc38                    fedora     2.1 M
 guile22                       x86_64  2.2.7-6.fc37                     fedora     6.5 M
 gupnp                         x86_64  1.6.3-1.fc38                     fedora     106 k
 gupnp-igd                     x86_64  1.2.0-7.fc38                     fedora      34 k
 harfbuzz                      x86_64  6.0.0-2.fc38                     fedora     819 k
 harfbuzz-devel                x86_64  6.0.0-2.fc38                     fedora     394 k
 harfbuzz-icu                  x86_64  6.0.0-2.fc38                     fedora      16 k
 hdf-libs                      x86_64  4.2.15-11.fc37                   fedora     294 k
 hdf5                          x86_64  1.12.1-10.fc37                   fedora     2.3 M
 hdf5-devel                    x86_64  1.12.1-10.fc37                   fedora     1.3 M
 hwdata                        noarch  0.366-1.fc38                     fedora     1.5 M
 iso-codes                     noarch  4.12.0-2.fc38                    fedora     3.5 M
 json-glib                     x86_64  1.6.6-3.fc37                     fedora     162 k
 jsoncpp                       x86_64  1.9.5-4.fc38                     copr_base   97 k
 kernel-headers                x86_64  6.2.0-0.rc4.git0.1.fc38          fedora     1.5 M
 lame-libs                     x86_64  3.100-13.fc37                    fedora     335 k
 langpacks-core-font-en        noarch  3.0-27.fc38                      fedora     9.9 k
 lcms2                         x86_64  2.14-1.fc38                      fedora     176 k
 libGLEW                       x86_64  2.2.0-3.fc37                     fedora     176 k
 libICE                        x86_64  1.0.10-9.fc37                    fedora      71 k
 libSM                         x86_64  1.2.3-11.fc37                    fedora      42 k
 libX11                        x86_64  1.8.3-2.fc38                     fedora     649 k
 libX11-common                 noarch  1.8.3-2.fc38                     fedora     178 k
 libX11-devel                  x86_64  1.8.3-2.fc38                     fedora     1.0 M
 libX11-xcb                    x86_64  1.8.3-2.fc38                     fedora      11 k
 libXau                        x86_64  1.0.11-1.fc38                    fedora      31 k
 libXau-devel                  x86_64  1.0.11-1.fc38                    fedora      13 k
 libXext                       x86_64  1.3.5-1.fc38                     fedora      39 k
 libXfixes                     x86_64  6.0.0-4.fc37                     fedora      19 k
 libXft                        x86_64  2.3.6-1.fc38                     fedora      71 k
 libXi                         x86_64  1.8-3.fc37                       fedora      39 k
 libXrender                    x86_64  0.9.11-1.fc38                    fedora      27 k
 libXv                         x86_64  1.0.11-17.fc37                   fedora      18 k
 libXxf86vm                    x86_64  1.1.5-1.fc38                     fedora      18 k
 libaec                        x86_64  1.0.6-3.fc37                     fedora      41 k
 libaec-devel                  x86_64  1.0.6-3.fc37                     fedora      12 k
 libasyncns                    x86_64  0.8-23.fc37                      fedora      30 k
 libb2                         x86_64  0.98.1-7.fc37                    fedora      25 k
 libblkid-devel                x86_64  2.38.1-3.fc38                    fedora      16 k
 libcurl-devel                 x86_64  7.87.0-3.fc38                    copr_base  895 k
 libdatrie                     x86_64  0.2.13-4.fc37                    fedora      32 k
 libdrm                        x86_64  2.4.114-1.fc38                   fedora     159 k
 libdrm-devel                  x86_64  2.4.114-1.fc38                   fedora     173 k
 libdvdnav                     x86_64  6.1.1-4.fc37                     fedora      55 k
 libdvdread                    x86_64  6.1.3-2.fc37                     fedora      72 k
 libevdev                      x86_64  1.13.0-2.fc38                    copr_base   45 k
 libffi-devel                  x86_64  3.4.4-1.fc38                     fedora      28 k
 libgfortran                   x86_64  13.0.1-0.1.fc38                  fedora     889 k
 libglvnd                      x86_64  1:1.6.0-1.fc38                   fedora     134 k
 libglvnd-core-devel           x86_64  1:1.6.0-1.fc38                   fedora      17 k
 libglvnd-devel                x86_64  1:1.6.0-1.fc38                   fedora     163 k
 libglvnd-egl                  x86_64  1:1.6.0-1.fc38                   fedora      36 k
 libglvnd-gles                 x86_64  1:1.6.0-1.fc38                   fedora      31 k
 libglvnd-glx                  x86_64  1:1.6.0-1.fc38                   fedora     140 k
 libglvnd-opengl               x86_64  1:1.6.0-1.fc38                   fedora      42 k
 libgudev                      x86_64  237-3.fc37                       fedora      35 k
 libicu                        x86_64  72.1-1.fc38                      fedora      10 M
 libicu-devel                  x86_64  72.1-1.fc38                      fedora     918 k
 libinput                      x86_64  1.22.1-2.fc38                    copr_base  200 k
 libjpeg-turbo                 x86_64  2.1.4-1.fc38                     fedora     181 k
 libmount-devel                x86_64  2.38.1-3.fc38                    fedora      18 k
 libmpc                        x86_64  1.3.1-1.fc38                     fedora      70 k
 libnice                       x86_64  0.1.21-2.fc38                    fedora     199 k
 libogg                        x86_64  2:1.3.5-4.fc37                   fedora      33 k
 libpciaccess                  x86_64  0.16-7.fc37                      fedora      27 k
 libpciaccess-devel            x86_64  0.16-7.fc37                      fedora      12 k
 libpng                        x86_64  2:1.6.37-13.fc37                 fedora     119 k
 libquadmath                   x86_64  13.0.1-0.1.fc38                  fedora     179 k
 libquadmath-devel             x86_64  13.0.1-0.1.fc38                  fedora      20 k
 librsvg2                      x86_64  2.55.1-3.fc38                    fedora     3.1 M
 libselinux-devel              x86_64  3.5-0.rc1.1.fc38.1               fedora     150 k
 libsepol-devel                x86_64  3.5-0.rc1.1.fc38                 fedora      49 k
 libsndfile                    x86_64  1.1.0-5.fc38                     fedora     212 k
 libsoup3                      x86_64  3.2.2-1.fc38                     fedora     387 k
 libsrtp                       x86_64  2.3.0-9.fc37                     fedora      57 k
 libstdc++-devel               x86_64  13.0.1-0.1.fc38                  fedora     2.6 M
 libstemmer                    x86_64  2.2.0-4.fc38                     fedora     170 k
 libthai                       x86_64  0.1.29-3.fc37                    fedora     213 k
 libtheora                     x86_64  1:1.1.1-32.fc37                  fedora     167 k
 libtool-ltdl                  x86_64  2.4.7-5.fc38                     fedora      37 k
 libunwind                     x86_64  1.6.2-5.fc38                     fedora      67 k
 libusb1                       x86_64  1.0.26-1.fc38                    fedora      74 k
 libuv                         x86_64  1:1.44.2-2.fc37                  fedora     151 k
 libva                         x86_64  2.17.0-1.fc38                    fedora     104 k
 libvisual                     x86_64  1:0.4.0-37.fc38                  fedora     143 k
 libvorbis                     x86_64  1:1.3.7-6.fc37                   fedora     195 k
 libwacom                      x86_64  2.4.0-1.fc37                     fedora      42 k
 libwacom-data                 noarch  2.4.0-1.fc37                     fedora     180 k
 libwayland-client             x86_64  1.21.0-1.fc37                    fedora      33 k
 libwayland-cursor             x86_64  1.21.0-1.fc37                    fedora      19 k
 libwayland-egl                x86_64  1.21.0-1.fc37                    fedora      13 k
 libwayland-server             x86_64  1.21.0-1.fc37                    fedora      41 k
 libwebp                       x86_64  1.3.0-1.fc38                     fedora     283 k
 libxcb                        x86_64  1.13.1-11.fc38                   copr_base  226 k
 libxcb-devel                  x86_64  1.13.1-11.fc38                   copr_base  1.0 M
 libxcrypt-devel               x86_64  4.4.33-5.fc38                    fedora      30 k
 libxkbcommon                  x86_64  1.5.0-1.fc38                     fedora     140 k
 libxkbcommon-x11              x86_64  1.5.0-1.fc38                     fedora      22 k
 libxshmfence                  x86_64  1.3-11.fc37                      fedora      12 k
 lilv-libs                     x86_64  0.24.14-4.fc38                   copr_base   58 k
 make                          x86_64  1:4.4-1.fc38                     fedora     580 k
 mesa-filesystem               x86_64  22.3.3-2.fc38                    copr_base   19 k
 mesa-libEGL                   x86_64  22.3.3-2.fc38                    copr_base  130 k
 mesa-libEGL-devel             x86_64  22.3.3-2.fc38                    copr_base   22 k
 mesa-libGL                    x86_64  22.3.3-2.fc38                    copr_base  176 k
 mesa-libGLU                   x86_64  9.0.1-7.fc37                     fedora     153 k
 mesa-libGLU-devel             x86_64  9.0.1-7.fc37                     fedora      13 k
 mesa-libgbm                   x86_64  22.3.3-2.fc38                    copr_base   45 k
 mesa-libglapi                 x86_64  22.3.3-2.fc38                    copr_base   54 k
 mpdecimal                     x86_64  2.5.1-4.fc37                     fedora     102 k
 mpg123-libs                   x86_64  1.31.2-1.fc38                    fedora     340 k
 msgpack                       x86_64  3.1.0-10.fc37                    fedora      30 k
 mtdev                         x86_64  1.1.6-4.fc37                     fedora      20 k
 ncurses                       x86_64  6.4-2.20230114.fc38              fedora     412 k
 netcdf                        x86_64  4.9.0-4.fc38                     fedora     828 k
 nspr                          x86_64  4.35.0-3.fc38                    fedora     136 k
 nss                           x86_64  3.87.0-1.fc38                    fedora     692 k
 nss-softokn                   x86_64  3.87.0-1.fc38                    fedora     1.0 M
 nss-softokn-freebl            x86_64  3.87.0-1.fc38                    fedora     326 k
 nss-sysinit                   x86_64  3.87.0-1.fc38                    fedora      18 k
 nss-util                      x86_64  3.87.0-1.fc38                    fedora      86 k
 openal-soft                   x86_64  1.22.2-6.fc38                    fedora     489 k
 openblas                      x86_64  0.3.21-4.fc38                    fedora      35 k
 openblas-openmp               x86_64  0.3.21-4.fc38                    fedora     5.1 M
 opus                          x86_64  1.3.1-11.fc37                    fedora     204 k
 orc                           x86_64  0.4.33-1.fc38                    fedora     204 k
 pango                         x86_64  1.50.12-2.fc38                   fedora     341 k
 pcre                          x86_64  8.45-1.fc37.2                    fedora     202 k
 pcre2-devel                   x86_64  10.42-1.fc38                     fedora     506 k
 pcre2-utf16                   x86_64  10.42-1.fc38                     fedora     213 k
 pcre2-utf32                   x86_64  10.42-1.fc38                     fedora     201 k
 perl-Carp                     noarch  1.52-489.fc37                    fedora      29 k
 perl-Class-Struct             noarch  0.66-494.fc38                    fedora      24 k
 perl-DynaLoader               x86_64  1.52-494.fc38                    fedora      28 k
 perl-Encode                   x86_64  4:3.19-492.fc38                  fedora     1.7 M
 perl-English                  noarch  1.11-494.fc38                    fedora      16 k
 perl-Errno                    x86_64  1.36-494.fc38                    fedora      17 k
 perl-Exporter                 noarch  5.77-489.fc37                    fedora      31 k
 perl-Fcntl                    x86_64  1.15-494.fc38                    fedora      23 k
 perl-File-Basename            noarch  2.85-494.fc38                    fedora      19 k
 perl-File-Find                noarch  1.40-494.fc38                    fedora      27 k
 perl-File-Path                noarch  2.18-489.fc37                    fedora      35 k
 perl-File-Temp                noarch  1:0.231.100-489.fc37             fedora      59 k
 perl-File-stat                noarch  1.12-494.fc38                    fedora      19 k
 perl-Getopt-Long              noarch  1:2.54-1.fc38                    fedora      60 k
 perl-Getopt-Std               noarch  1.13-494.fc38                    fedora      18 k
 perl-HTTP-Tiny                noarch  0.082-1.fc37                     fedora      55 k
 perl-IO                       x86_64  1.50-494.fc38                    fedora      94 k
 perl-IPC-Open3                noarch  1.22-494.fc38                    fedora      25 k
 perl-MIME-Base64              x86_64  3.16-489.fc37                    fedora      30 k
 perl-POSIX                    x86_64  2.03-494.fc38                    fedora     100 k
 perl-PathTools                x86_64  3.84-489.fc37                    fedora      89 k
 perl-Pod-Escapes              noarch  1:1.07-489.fc37                  fedora      20 k
 perl-Pod-Perldoc              noarch  3.28.01-490.fc37                 fedora      90 k
 perl-Pod-Simple               noarch  1:3.43-490.fc37                  fedora     225 k
 perl-Pod-Usage                noarch  4:2.03-3.fc37                    fedora      40 k
 perl-Scalar-List-Utils        x86_64  5:1.63-489.fc38                  fedora      72 k
 perl-SelectSaver              noarch  1.02-494.fc38                    fedora      14 k
 perl-Socket                   x86_64  4:2.036-1.fc38                   fedora      55 k
 perl-Storable                 x86_64  1:3.26-489.fc37                  fedora      97 k
 perl-Symbol                   noarch  1.09-494.fc38                    fedora      16 k
 perl-Term-ANSIColor           noarch  5.01-490.fc37                    fedora      48 k
 perl-Term-Cap                 noarch  1.17-489.fc37                    fedora      22 k
 perl-Text-ParseWords          noarch  3.31-489.fc37                    fedora      16 k
 perl-Text-Tabs+Wrap           noarch  2021.0814-489.fc37               fedora      22 k
 perl-Time-Local               noarch  2:1.300-489.fc37                 fedora      33 k
 perl-constant                 noarch  1.33-490.fc37                    fedora      23 k
 perl-if                       noarch  0.61.000-494.fc38                fedora      16 k
 perl-interpreter              x86_64  4:5.36.0-494.fc38                fedora      74 k
 perl-libs                     x86_64  4:5.36.0-494.fc38                fedora     2.2 M
 perl-mro                      x86_64  1.26-494.fc38                    fedora      31 k
 perl-overload                 noarch  1.35-494.fc38                    fedora      48 k
 perl-overloading              noarch  0.02-494.fc38                    fedora      15 k
 perl-parent                   noarch  1:0.239-1.fc38                   fedora      14 k
 perl-podlators                noarch  1:5.01-1.fc38                    fedora     125 k
 perl-vars                     noarch  1.05-494.fc38                    fedora      15 k
 pixman                        x86_64  0.40.0-6.fc37                    fedora     277 k
 pulseaudio-libs               x86_64  16.1-2.fc38                      fedora     687 k
 pyproject-rpm-macros          noarch  1.5.1-1.fc38                     fedora      40 k
 python-pip-wheel              noarch  22.3.1-1.fc38                    fedora     1.4 M
 python-qt5-rpm-macros         noarch  5.15.6-10.fc38                   fedora     8.9 k
 python-rpm-macros             noarch  3.11-7.fc38                      fedora      20 k
 python-setuptools-wheel       noarch  65.5.1-1.fc38                    fedora     715 k
 python3                       x86_64  3.11.1-3.fc38                    fedora      27 k
 python3-dbus                  x86_64  1.3.2-2.fc38                     copr_base  147 k
 python3-libs                  x86_64  3.11.1-3.fc38                    fedora     9.6 M
 python3-msgpack               x86_64  1.0.4-3.fc37                     fedora      96 k
 python3-packaging             noarch  21.3-7.fc38                      fedora      98 k
 python3-pyparsing             noarch  3.0.9-2.fc37                     fedora     262 k
 python3-pyqt5-sip             x86_64  12.11.0-2.fc37                   fedora      70 k
 python3-qt5                   x86_64  5.15.6-10.fc38                   fedora     1.2 M
 python3-qt5-base              x86_64  5.15.6-10.fc38                   fedora     3.3 M
 python3-rpm-generators        noarch  14-1.fc38                        fedora      30 k
 python3-rpm-macros            noarch  3.11-7.fc38                      fedora      15 k
 qt-settings                   noarch  37.0-1.fc38                      fedora      11 k
 qt5-qtbase                    x86_64  5.15.8-2.fc38                    fedora     3.6 M
 qt5-qtbase-common             noarch  5.15.8-2.fc38                    fedora      11 k
 qt5-qtbase-devel              x86_64  5.15.8-2.fc38                    fedora     3.5 M
 qt5-qtbase-gui                x86_64  5.15.8-2.fc38                    fedora     6.4 M
 qt5-qtconnectivity            x86_64  5.15.8-1.fc38                    fedora     464 k
 qt5-qtdeclarative             x86_64  5.15.8-1.fc38                    fedora     4.2 M
 qt5-qtlocation                x86_64  5.15.8-1.fc38                    fedora     3.0 M
 qt5-qtmultimedia              x86_64  5.15.8-1.fc38                    fedora     812 k
 qt5-qtsensors                 x86_64  5.15.8-1.fc38                    fedora     227 k
 qt5-qtserialport              x86_64  5.15.8-1.fc38                    fedora      65 k
 qt5-qtsvg                     x86_64  5.15.8-1.fc38                    fedora     186 k
 qt5-qttools-common            noarch  5.15.8-1.fc38                    fedora      11 k
 qt5-qttools-libs-designer     x86_64  5.15.8-1.fc38                    fedora     2.7 M
 qt5-qttools-libs-help         x86_64  5.15.8-1.fc38                    fedora     157 k
 qt5-qtwebchannel              x86_64  5.15.8-1.fc38                    fedora      99 k
 qt5-qtwebsockets              x86_64  5.15.8-1.fc38                    fedora      87 k
 qt5-qtx11extras               x86_64  5.15.8-1.fc38                    fedora      35 k
 qt5-qtxmlpatterns             x86_64  5.15.8-1.fc38                    fedora     996 k
 qt5-rpm-macros                noarch  5.15.8-1.fc38                    fedora     9.7 k
 rhash                         x86_64  1.4.3-1.fc38                     fedora     193 k
 serd                          x86_64  0.30.12-2.fc37                   fedora      61 k
 shared-mime-info              x86_64  2.2-2.fc37                       fedora     381 k
 snappy                        x86_64  1.1.9-5.fc37                     fedora      36 k
 sord                          x86_64  0.16.10-1.fc37                   fedora      46 k
 soundtouch                    x86_64  2.3.1-3.fc37                     fedora      94 k
 sratom                        x86_64  0.6.10-2.fc37                    fedora      26 k
 sysprof-capture-devel         x86_64  3.46.0-1.fc38                    fedora      58 k
 vim-filesystem                noarch  2:9.0.1221-1.fc38                fedora      18 k
 vulkan-headers                noarch  1.3.231.1-1.fc38                 fedora     1.0 M
 vulkan-loader                 x86_64  1.3.231.1-2.fc38                 fedora     145 k
 vulkan-loader-devel           x86_64  1.3.231.1-2.fc38                 fedora     9.1 k
 webrtc-audio-processing       x86_64  0.3.1-9.fc37                     fedora     304 k
 xcb-util                      x86_64  0.4.1-1.fc38                     fedora      18 k
 xcb-util-image                x86_64  0.4.1-1.fc38                     fedora      19 k
 xcb-util-keysyms              x86_64  0.4.1-1.fc38                     fedora      14 k
 xcb-util-renderutil           x86_64  0.3.10-1.fc38                    fedora      17 k
 xcb-util-wm                   x86_64  0.4.2-1.fc38                     fedora      31 k
 xkeyboard-config              noarch  2.36-3.fc38                      fedora     956 k
 xml-common                    noarch  0.6.3-59.fc37                    fedora      31 k
 xorg-x11-proto-devel          noarch  2022.2-2.fc38                    fedora     299 k
 xz-devel                      x86_64  5.2.9-1.fc38                     fedora      58 k
 zlib-devel                    x86_64  1.2.13-2.fc38                    fedora      45 k

Transaction Summary
========================================================================================
Install  314 Packages

Total download size: 230 M
Installed size: 861 M
Downloading Packages:
(1/314): brotli-devel-1.0.9-11.fc38.x86_64.rpm  1.2 MB/s |  32 kB     00:00    
(2/314): brotli-1.0.9-11.fc38.x86_64.rpm         11 MB/s | 316 kB     00:00    
(3/314): cmake-filesystem-3.25.2-1.fc38.x86_64. 9.4 MB/s |  17 kB     00:00    
(4/314): cmake-data-3.25.2-1.fc38.noarch.rpm    195 MB/s | 1.7 MB     00:00    
(5/314): cmake-rpm-macros-3.25.2-1.fc38.noarch. 2.9 MB/s |  17 kB     00:00    
(6/314): crypto-policies-scripts-20221215-2.git  58 MB/s | 104 kB     00:00    
(7/314): glib2-2.74.1-3.fc38.x86_64.rpm         223 MB/s | 2.7 MB     00:00    
(8/314): glib2-devel-2.74.1-3.fc38.x86_64.rpm    44 MB/s | 516 kB     00:00    
(9/314): glibc-devel-2.36.9000-23.fc38.x86_64.r  29 MB/s |  46 kB     00:00    
(10/314): glibc-headers-x86-2.36.9000-23.fc38.n 119 MB/s | 454 kB     00:00    
(11/314): graphite2-1.3.14-11.fc38.x86_64.rpm    50 MB/s |  95 kB     00:00    
(12/314): gnutls-3.7.8-11.fc38.x86_64.rpm       132 MB/s | 1.1 MB     00:00    
(13/314): graphite2-devel-1.3.14-11.fc38.x86_64 7.3 MB/s |  21 kB     00:00    
(14/314): jsoncpp-1.9.5-4.fc38.x86_64.rpm        32 MB/s |  97 kB     00:00    
(15/314): libcurl-devel-7.87.0-3.fc38.x86_64.rp  61 MB/s | 895 kB     00:00    
(16/314): cmake-3.25.2-1.fc38.x86_64.rpm         75 MB/s | 6.9 MB     00:00    
(17/314): libevdev-1.13.0-2.fc38.x86_64.rpm     5.3 MB/s |  45 kB     00:00    
(18/314): libinput-1.22.1-2.fc38.x86_64.rpm      98 MB/s | 200 kB     00:00    
(19/314): libxcb-1.13.1-11.fc38.x86_64.rpm       85 MB/s | 226 kB     00:00    
(20/314): libxcb-devel-1.13.1-11.fc38.x86_64.rp 197 MB/s | 1.0 MB     00:00    
(21/314): libxml2-devel-2.10.3-3.fc38.x86_64.rp  94 MB/s | 502 kB     00:00    
(22/314): lilv-libs-0.24.14-4.fc38.x86_64.rpm    14 MB/s |  58 kB     00:00    
(23/314): gstreamer1-plugins-bad-free-1.20.5-2.  64 MB/s | 2.8 MB     00:00    
(24/314): mesa-filesystem-22.3.3-2.fc38.x86_64. 4.1 MB/s |  19 kB     00:00    
(25/314): mesa-libEGL-22.3.3-2.fc38.x86_64.rpm   30 MB/s | 130 kB     00:00    
(26/314): mesa-libEGL-devel-22.3.3-2.fc38.x86_6 9.3 MB/s |  22 kB     00:00    
(27/314): mesa-libGL-22.3.3-2.fc38.x86_64.rpm    71 MB/s | 176 kB     00:00    
(28/314): mesa-libGL-devel-22.3.3-2.fc38.x86_64  14 MB/s |  36 kB     00:00    
(29/314): mesa-libgbm-22.3.3-2.fc38.x86_64.rpm   35 MB/s |  45 kB     00:00    
(30/314): mesa-libglapi-22.3.3-2.fc38.x86_64.rp  37 MB/s |  54 kB     00:00    
(31/314): python3-dbus-1.3.2-2.fc38.x86_64.rpm   26 MB/s | 147 kB     00:00    
(32/314): annobin-docs-11.06-2.fc38.noarch.rpm   21 MB/s |  93 kB     00:00    
(33/314): alsa-lib-1.2.8-2.fc38.x86_64.rpm       28 MB/s | 517 kB     00:00    
(34/314): python3-numpy-1.23.5-2.fc38.x86_64.rp 249 MB/s | 7.3 MB     00:00    
(35/314): annobin-plugin-gcc-11.06-2.fc38.x86_6  57 MB/s | 890 kB     00:00    
(36/314): avahi-libs-0.8-19.fc38.x86_64.rpm     6.8 MB/s |  67 kB     00:00    
(37/314): bzip2-devel-1.0.8-12.fc37.x86_64.rpm   39 MB/s | 214 kB     00:00    
(38/314): blosc-1.21.2-1.fc38.x86_64.rpm        7.5 MB/s |  54 kB     00:00    
(39/314): cairo-1.17.6-2.fc37.x86_64.rpm        151 MB/s | 676 kB     00:00    
(40/314): cairo-gobject-1.17.6-2.fc37.x86_64.rp 4.7 MB/s |  18 kB     00:00    
(41/314): bluez-libs-5.66-4.fc38.x86_64.rpm     5.7 MB/s |  84 kB     00:00    
(42/314): catch-devel-2.13.8-3.fc37.x86_64.rpm   35 MB/s | 205 kB     00:00    
(43/314): cdparanoia-libs-10.2-40.fc37.x86_64.r 8.7 MB/s |  54 kB     00:00    
(44/314): cups-libs-2.4.2-5.fc38.x86_64.rpm      78 MB/s | 268 kB     00:00    
(45/314): dbus-1.14.4-1.fc38.x86_64.rpm         1.7 MB/s | 7.8 kB     00:00    
(46/314): dbus-broker-32-1.fc37.x86_64.rpm       34 MB/s | 175 kB     00:00    
(47/314): dbus-common-1.14.4-1.fc38.noarch.rpm  3.7 MB/s |  15 kB     00:00    
(48/314): dbus-libs-1.14.4-1.fc38.x86_64.rpm     38 MB/s | 156 kB     00:00    
(49/314): desktop-file-utils-0.26-7.fc37.x86_64  19 MB/s |  72 kB     00:00    
(50/314): emacs-filesystem-28.2-1.fc38.noarch.r 2.5 MB/s | 7.1 kB     00:00    
(51/314): expat-2.5.0-1.fc38.x86_64.rpm          27 MB/s | 110 kB     00:00    
(52/314): fdk-aac-free-2.0.0-9.fc37.x86_64.rpm   43 MB/s | 332 kB     00:00    
(53/314): flexiblas-3.3.0-1.fc38.x86_64.rpm      19 MB/s |  32 kB     00:00    
(54/314): flac-libs-1.4.2-1.fc38.x86_64.rpm      25 MB/s | 256 kB     00:00    
(55/314): flexiblas-openblas-openmp-3.3.0-1.fc3 2.7 MB/s |  17 kB     00:00    
(56/314): fontconfig-2.14.1-2.fc38.x86_64.rpm    50 MB/s | 294 kB     00:00    
(57/314): cpp-13.0.1-0.1.fc38.x86_64.rpm        182 MB/s |  11 MB     00:00    
(58/314): fonts-filesystem-2.0.5-10.fc38.noarch 575 kB/s | 8.0 kB     00:00    
(59/314): flexiblas-netlib-3.3.0-1.fc38.x86_64.  95 MB/s | 3.2 MB     00:00    
(60/314): freetype-2.12.1-3.fc37.x86_64.rpm     167 MB/s | 407 kB     00:00    
(61/314): freeglut-3.4.0-1.fc38.x86_64.rpm      9.0 MB/s | 154 kB     00:00    
(62/314): freetype-devel-2.12.1-3.fc37.x86_64.r  76 MB/s | 895 kB     00:00    
(63/314): fribidi-1.0.12-2.fc37.x86_64.rpm       30 MB/s |  89 kB     00:00    
(64/314): gc-8.2.2-1.fc38.x86_64.rpm             55 MB/s | 110 kB     00:00    
(65/314): freeglut-devel-3.4.0-1.fc38.x86_64.rp  39 MB/s | 949 kB     00:00    
(66/314): gcc-c++-13.0.1-0.1.fc38.x86_64.rpm    146 MB/s |  13 MB     00:00    
(67/314): gcc-plugin-annobin-13.0.1-0.1.fc38.x8 7.0 MB/s |  30 kB     00:00    
(68/314): gdk-pixbuf2-2.42.10-1.fc38.x86_64.rpm  25 MB/s | 485 kB     00:00    
(69/314): gl-manpages-1.1-25.20190306.fc37.noar  71 MB/s | 1.2 MB     00:00    
(70/314): glew-devel-2.2.0-3.fc37.x86_64.rpm     22 MB/s | 222 kB     00:00    
(71/314): glm-devel-0.9.9.8-5.fc38.noarch.rpm    31 MB/s | 302 kB     00:00    
(72/314): glx-utils-8.4.0-14.20210504git0f9e7d9 6.5 MB/s |  41 kB     00:00    
(73/314): google-noto-fonts-common-20201206^1.g 2.5 MB/s |  18 kB     00:00    
(74/314): google-noto-sans-vf-fonts-20201206^1. 117 MB/s | 729 kB     00:00    
(75/314): gcc-13.0.1-0.1.fc38.x86_64.rpm        157 MB/s |  34 MB     00:00    
(76/314): graphene-1.10.6-4.fc37.x86_64.rpm     1.5 MB/s |  62 kB     00:00    
(77/314): gcc-gfortran-13.0.1-0.1.fc38.x86_64.r  54 MB/s |  12 MB     00:00    
(78/314): gsm-1.0.22-1.fc37.x86_64.rpm          2.3 MB/s |  35 kB     00:00    
(79/314): groff-base-1.22.4-10.fc37.x86_64.rpm   55 MB/s | 1.1 MB     00:00    
(80/314): gstreamer1-1.20.5-1.fc38.x86_64.rpm   134 MB/s | 1.4 MB     00:00    
(81/314): gssdp-1.6.2-1.fc38.x86_64.rpm         4.8 MB/s |  58 kB     00:00    
(82/314): gupnp-1.6.3-1.fc38.x86_64.rpm          11 MB/s | 106 kB     00:00    
(83/314): gupnp-igd-1.2.0-7.fc38.x86_64.rpm     3.6 MB/s |  34 kB     00:00    
(84/314): gstreamer1-plugins-base-1.20.5-1.fc38  66 MB/s | 2.1 MB     00:00    
(85/314): harfbuzz-devel-6.0.0-2.fc38.x86_64.rp  57 MB/s | 394 kB     00:00    
(86/314): harfbuzz-icu-6.0.0-2.fc38.x86_64.rpm  1.8 MB/s |  16 kB     00:00    
(87/314): guile22-2.2.7-6.fc37.x86_64.rpm       113 MB/s | 6.5 MB     00:00    
(88/314): hdf-libs-4.2.15-11.fc37.x86_64.rpm     15 MB/s | 294 kB     00:00    
(89/314): harfbuzz-6.0.0-2.fc38.x86_64.rpm       18 MB/s | 819 kB     00:00    
(90/314): hdf5-devel-1.12.1-10.fc37.x86_64.rpm   50 MB/s | 1.3 MB     00:00    
(91/314): hwdata-0.366-1.fc38.noarch.rpm         69 MB/s | 1.5 MB     00:00    
(92/314): json-glib-1.6.6-3.fc37.x86_64.rpm      40 MB/s | 162 kB     00:00    
(93/314): kernel-headers-6.2.0-0.rc4.git0.1.fc3 129 MB/s | 1.5 MB     00:00    
(94/314): iso-codes-4.12.0-2.fc38.noarch.rpm    105 MB/s | 3.5 MB     00:00    
(95/314): lame-libs-3.100-13.fc37.x86_64.rpm     20 MB/s | 335 kB     00:00    
(96/314): langpacks-core-font-en-3.0-27.fc38.no 4.5 MB/s | 9.9 kB     00:00    
(97/314): lcms2-2.14-1.fc38.x86_64.rpm           99 MB/s | 176 kB     00:00    
(98/314): hdf5-1.12.1-10.fc37.x86_64.rpm         32 MB/s | 2.3 MB     00:00    
(99/314): libICE-1.0.10-9.fc37.x86_64.rpm        21 MB/s |  71 kB     00:00    
(100/314): libSM-1.2.3-11.fc37.x86_64.rpm        30 MB/s |  42 kB     00:00    
(101/314): libGLEW-2.2.0-3.fc37.x86_64.rpm       26 MB/s | 176 kB     00:00    
(102/314): libX11-1.8.3-2.fc38.x86_64.rpm       138 MB/s | 649 kB     00:00    
(103/314): libX11-common-1.8.3-2.fc38.noarch.rp  39 MB/s | 178 kB     00:00    
(104/314): libX11-xcb-1.8.3-2.fc38.x86_64.rpm   3.8 MB/s |  11 kB     00:00    
(105/314): libX11-devel-1.8.3-2.fc38.x86_64.rpm 133 MB/s | 1.0 MB     00:00    
(106/314): libXau-1.0.11-1.fc38.x86_64.rpm      8.9 MB/s |  31 kB     00:00    
(107/314): libXau-devel-1.0.11-1.fc38.x86_64.rp 4.6 MB/s |  13 kB     00:00    
(108/314): libXext-1.3.5-1.fc38.x86_64.rpm       32 MB/s |  39 kB     00:00    
(109/314): libXfixes-6.0.0-4.fc37.x86_64.rpm     13 MB/s |  19 kB     00:00    
(110/314): libXft-2.3.6-1.fc38.x86_64.rpm        32 MB/s |  71 kB     00:00    
(111/314): libXi-1.8-3.fc37.x86_64.rpm           22 MB/s |  39 kB     00:00    
(112/314): libXrender-0.9.11-1.fc38.x86_64.rpm   13 MB/s |  27 kB     00:00    
(113/314): libXxf86vm-1.1.5-1.fc38.x86_64.rpm   6.9 MB/s |  18 kB     00:00    
(114/314): libaec-1.0.6-3.fc37.x86_64.rpm        25 MB/s |  41 kB     00:00    
(115/314): libXv-1.0.11-17.fc37.x86_64.rpm      4.1 MB/s |  18 kB     00:00    
(116/314): libappstream-glib-0.8.2-1.fc38.x86_6  66 MB/s | 404 kB     00:00    
(117/314): libasyncns-0.8-23.fc37.x86_64.rpm    5.5 MB/s |  30 kB     00:00    
(118/314): libaec-devel-1.0.6-3.fc37.x86_64.rpm 1.5 MB/s |  12 kB     00:00    
(119/314): libb2-0.98.1-7.fc37.x86_64.rpm        19 MB/s |  25 kB     00:00    
(120/314): libdatrie-0.2.13-4.fc37.x86_64.rpm    20 MB/s |  32 kB     00:00    
(121/314): libdrm-2.4.114-1.fc38.x86_64.rpm      60 MB/s | 159 kB     00:00    
(122/314): libdrm-devel-2.4.114-1.fc38.x86_64.r  82 MB/s | 173 kB     00:00    
(123/314): libblkid-devel-2.38.1-3.fc38.x86_64. 2.7 MB/s |  16 kB     00:00    
(124/314): libdvdnav-6.1.1-4.fc37.x86_64.rpm     15 MB/s |  55 kB     00:00    
(125/314): libgfortran-13.0.1-0.1.fc38.x86_64.r 245 MB/s | 889 kB     00:00    
(126/314): libdvdread-6.1.3-2.fc37.x86_64.rpm   9.3 MB/s |  72 kB     00:00    
(127/314): libffi-devel-3.4.4-1.fc38.x86_64.rpm 4.2 MB/s |  28 kB     00:00    
(128/314): libglvnd-1.6.0-1.fc38.x86_64.rpm      44 MB/s | 134 kB     00:00    
(129/314): libglvnd-core-devel-1.6.0-1.fc38.x86 5.3 MB/s |  17 kB     00:00    
(130/314): libglvnd-devel-1.6.0-1.fc38.x86_64.r  48 MB/s | 163 kB     00:00    
(131/314): libglvnd-egl-1.6.0-1.fc38.x86_64.rpm  21 MB/s |  36 kB     00:00    
(132/314): libglvnd-gles-1.6.0-1.fc38.x86_64.rp  12 MB/s |  31 kB     00:00    
(133/314): libglvnd-glx-1.6.0-1.fc38.x86_64.rpm  41 MB/s | 140 kB     00:00    
(134/314): libglvnd-opengl-1.6.0-1.fc38.x86_64.  15 MB/s |  42 kB     00:00    
(135/314): libgudev-237-3.fc37.x86_64.rpm        23 MB/s |  35 kB     00:00    
(136/314): libjpeg-turbo-2.1.4-1.fc38.x86_64.rp  40 MB/s | 181 kB     00:00    
(137/314): libicu-devel-72.1-1.fc38.x86_64.rpm   64 MB/s | 918 kB     00:00    
(138/314): libmount-devel-2.38.1-3.fc38.x86_64. 1.8 MB/s |  18 kB     00:00    
(139/314): libmpc-1.3.1-1.fc38.x86_64.rpm        18 MB/s |  70 kB     00:00    
(140/314): libogg-1.3.5-4.fc37.x86_64.rpm       6.3 MB/s |  33 kB     00:00    
(141/314): libnice-0.1.21-2.fc38.x86_64.rpm      20 MB/s | 199 kB     00:00    
(142/314): libpciaccess-0.16-7.fc37.x86_64.rpm  6.5 MB/s |  27 kB     00:00    
(143/314): libpciaccess-devel-0.16-7.fc37.x86_6 3.4 MB/s |  12 kB     00:00    
(144/314): libpng-1.6.37-13.fc37.x86_64.rpm      34 MB/s | 119 kB     00:00    
(145/314): libpng-devel-1.6.37-13.fc37.x86_64.r  39 MB/s | 290 kB     00:00    
(146/314): libquadmath-13.0.1-0.1.fc38.x86_64.r  30 MB/s | 179 kB     00:00    
(147/314): libquadmath-devel-13.0.1-0.1.fc38.x8 2.7 MB/s |  20 kB     00:00    
(148/314): libicu-72.1-1.fc38.x86_64.rpm        160 MB/s |  10 MB     00:00    
(149/314): libselinux-devel-3.5-0.rc1.1.fc38.1. 7.3 MB/s | 150 kB     00:00    
(150/314): librsvg2-2.55.1-3.fc38.x86_64.rpm     98 MB/s | 3.1 MB     00:00    
(151/314): libsepol-devel-3.5-0.rc1.1.fc38.x86_ 4.9 MB/s |  49 kB     00:00    
(152/314): libsoup3-3.2.2-1.fc38.x86_64.rpm      68 MB/s | 387 kB     00:00    
(153/314): libsndfile-1.1.0-5.fc38.x86_64.rpm    19 MB/s | 212 kB     00:00    
(154/314): libsrtp-2.3.0-9.fc37.x86_64.rpm       11 MB/s |  57 kB     00:00    
(155/314): libstemmer-2.2.0-4.fc38.x86_64.rpm    58 MB/s | 170 kB     00:00    
(156/314): libthai-0.1.29-3.fc37.x86_64.rpm      38 MB/s | 213 kB     00:00    
(157/314): libstdc++-devel-13.0.1-0.1.fc38.x86_ 188 MB/s | 2.6 MB     00:00    
(158/314): libtool-ltdl-2.4.7-5.fc38.x86_64.rpm 7.7 MB/s |  37 kB     00:00    
(159/314): libunwind-1.6.2-5.fc38.x86_64.rpm     17 MB/s |  67 kB     00:00    
(160/314): libusb1-1.0.26-1.fc38.x86_64.rpm      22 MB/s |  74 kB     00:00    
(161/314): libtheora-1.1.1-32.fc37.x86_64.rpm    12 MB/s | 167 kB     00:00    
(162/314): libuv-1.44.2-2.fc37.x86_64.rpm        63 MB/s | 151 kB     00:00    
(163/314): libva-2.17.0-1.fc38.x86_64.rpm        22 MB/s | 104 kB     00:00    
(164/314): libvisual-0.4.0-37.fc38.x86_64.rpm    27 MB/s | 143 kB     00:00    
(165/314): libwacom-2.4.0-1.fc37.x86_64.rpm      21 MB/s |  42 kB     00:00    
(166/314): libwacom-data-2.4.0-1.fc37.noarch.rp  91 MB/s | 180 kB     00:00    
(167/314): libvorbis-1.3.7-6.fc37.x86_64.rpm     28 MB/s | 195 kB     00:00    
(168/314): libwayland-client-1.21.0-1.fc37.x86_  18 MB/s |  33 kB     00:00    
(169/314): libwayland-cursor-1.21.0-1.fc37.x86_  12 MB/s |  19 kB     00:00    
(170/314): libwayland-egl-1.21.0-1.fc37.x86_64. 7.9 MB/s |  13 kB     00:00    
(171/314): libwayland-server-1.21.0-1.fc37.x86_  28 MB/s |  41 kB     00:00    
(172/314): libxcrypt-devel-4.4.33-5.fc38.x86_64  21 MB/s |  30 kB     00:00    
(173/314): libwebp-1.3.0-1.fc38.x86_64.rpm       92 MB/s | 283 kB     00:00    
(174/314): libxkbcommon-1.5.0-1.fc38.x86_64.rpm  44 MB/s | 140 kB     00:00    
(175/314): libxkbcommon-x11-1.5.0-1.fc38.x86_64 9.3 MB/s |  22 kB     00:00    
(176/314): libxshmfence-1.3-11.fc37.x86_64.rpm  3.4 MB/s |  12 kB     00:00    
(177/314): mesa-libGLU-9.0.1-7.fc37.x86_64.rpm   46 MB/s | 153 kB     00:00    
(178/314): make-4.4-1.fc38.x86_64.rpm           107 MB/s | 580 kB     00:00    
(179/314): mesa-libGLU-devel-9.0.1-7.fc37.x86_6 3.5 MB/s |  13 kB     00:00    
(180/314): mpdecimal-2.5.1-4.fc37.x86_64.rpm     29 MB/s | 102 kB     00:00    
(181/314): msgpack-3.1.0-10.fc37.x86_64.rpm      10 MB/s |  30 kB     00:00    
(182/314): mpg123-libs-1.31.2-1.fc38.x86_64.rpm  41 MB/s | 340 kB     00:00    
(183/314): mmtf-cpp-devel-1.1.0-1.fc38.x86_64.r 2.4 MB/s |  30 kB     00:00    
(184/314): mtdev-1.1.6-4.fc37.x86_64.rpm        8.3 MB/s |  20 kB     00:00    
(185/314): msgpack-devel-3.1.0-10.fc37.x86_64.r  43 MB/s | 428 kB     00:00    
(186/314): ncurses-6.4-2.20230114.fc38.x86_64.r  51 MB/s | 412 kB     00:00    
(187/314): netcdf-4.9.0-4.fc38.x86_64.rpm        63 MB/s | 828 kB     00:00    
(188/314): nspr-4.35.0-3.fc38.x86_64.rpm         23 MB/s | 136 kB     00:00    
(189/314): netcdf-devel-4.9.0-4.fc38.x86_64.rpm 8.8 MB/s |  99 kB     00:00    
(190/314): nss-3.87.0-1.fc38.x86_64.rpm         102 MB/s | 692 kB     00:00    
(191/314): nss-softokn-freebl-3.87.0-1.fc38.x86  39 MB/s | 326 kB     00:00    
(192/314): nss-softokn-3.87.0-1.fc38.x86_64.rpm  80 MB/s | 1.0 MB     00:00    
(193/314): nss-sysinit-3.87.0-1.fc38.x86_64.rpm 2.8 MB/s |  18 kB     00:00    
(194/314): nss-util-3.87.0-1.fc38.x86_64.rpm     14 MB/s |  86 kB     00:00    
(195/314): openblas-0.3.21-4.fc38.x86_64.rpm    6.6 MB/s |  35 kB     00:00    
(196/314): openal-soft-1.22.2-6.fc38.x86_64.rpm  46 MB/s | 489 kB     00:00    
(197/314): opus-1.3.1-11.fc37.x86_64.rpm         33 MB/s | 204 kB     00:00    
(198/314): pango-1.50.12-2.fc38.x86_64.rpm       33 MB/s | 341 kB     00:00    
(199/314): orc-0.4.33-1.fc38.x86_64.rpm          16 MB/s | 204 kB     00:00    
(200/314): pcre-8.45-1.fc37.2.x86_64.rpm         29 MB/s | 202 kB     00:00    
(201/314): pcre2-devel-10.42-1.fc38.x86_64.rpm   51 MB/s | 506 kB     00:00    
(202/314): pcre2-utf16-10.42-1.fc38.x86_64.rpm   24 MB/s | 213 kB     00:00    
(203/314): pcre2-utf32-10.42-1.fc38.x86_64.rpm   35 MB/s | 201 kB     00:00    
(204/314): perl-Class-Struct-0.66-494.fc38.noar 3.9 MB/s |  24 kB     00:00    
(205/314): perl-Carp-1.52-489.fc37.noarch.rpm   2.4 MB/s |  29 kB     00:00    
(206/314): perl-DynaLoader-1.52-494.fc38.x86_64 2.3 MB/s |  28 kB     00:00    
(207/314): openblas-openmp-0.3.21-4.fc38.x86_64  82 MB/s | 5.1 MB     00:00    
(208/314): perl-English-1.11-494.fc38.noarch.rp 1.0 MB/s |  16 kB     00:00    
(209/314): perl-Errno-1.36-494.fc38.x86_64.rpm  1.6 MB/s |  17 kB     00:00    
(210/314): perl-Encode-3.19-492.fc38.x86_64.rpm  51 MB/s | 1.7 MB     00:00    
(211/314): perl-Exporter-5.77-489.fc37.noarch.r 2.1 MB/s |  31 kB     00:00    
(212/314): perl-Fcntl-1.15-494.fc38.x86_64.rpm  1.7 MB/s |  23 kB     00:00    
(213/314): perl-File-Basename-2.85-494.fc38.noa 2.1 MB/s |  19 kB     00:00    
(214/314): perl-File-Find-1.40-494.fc38.noarch. 2.3 MB/s |  27 kB     00:00    
(215/314): perl-File-Path-2.18-489.fc37.noarch. 2.9 MB/s |  35 kB     00:00    
(216/314): perl-File-Temp-0.231.100-489.fc37.no 6.0 MB/s |  59 kB     00:00    
(217/314): perl-File-stat-1.12-494.fc38.noarch. 4.2 MB/s |  19 kB     00:00    
(218/314): perl-Getopt-Std-1.13-494.fc38.noarch 4.7 MB/s |  18 kB     00:00    
(219/314): perl-Getopt-Long-2.54-1.fc38.noarch. 9.6 MB/s |  60 kB     00:00    
(220/314): perl-HTTP-Tiny-0.082-1.fc37.noarch.r  10 MB/s |  55 kB     00:00    
(221/314): perl-IO-1.50-494.fc38.x86_64.rpm      19 MB/s |  94 kB     00:00    
(222/314): perl-IPC-Open3-1.22-494.fc38.noarch. 5.9 MB/s |  25 kB     00:00    
(223/314): perl-MIME-Base64-3.16-489.fc37.x86_6 5.5 MB/s |  30 kB     00:00    
(224/314): perl-PathTools-3.84-489.fc37.x86_64.  17 MB/s |  89 kB     00:00    
(225/314): perl-POSIX-2.03-494.fc38.x86_64.rpm   13 MB/s | 100 kB     00:00    
(226/314): perl-Pod-Escapes-1.07-489.fc37.noarc 5.5 MB/s |  20 kB     00:00    
(227/314): perl-Pod-Perldoc-3.28.01-490.fc37.no  17 MB/s |  90 kB     00:00    
(228/314): perl-Pod-Usage-2.03-3.fc37.noarch.rp 5.2 MB/s |  40 kB     00:00    
(229/314): perl-Pod-Simple-3.43-490.fc37.noarch  22 MB/s | 225 kB     00:00    
(230/314): perl-Scalar-List-Utils-1.63-489.fc38 9.3 MB/s |  72 kB     00:00    
(231/314): perl-Socket-2.036-1.fc38.x86_64.rpm   16 MB/s |  55 kB     00:00    
(232/314): perl-SelectSaver-1.02-494.fc38.noarc 2.4 MB/s |  14 kB     00:00    
(233/314): perl-Storable-3.26-489.fc37.x86_64.r  23 MB/s |  97 kB     00:00    
(234/314): perl-Symbol-1.09-494.fc38.noarch.rpm 4.8 MB/s |  16 kB     00:00    
(235/314): perl-Term-Cap-1.17-489.fc37.noarch.r 6.1 MB/s |  22 kB     00:00    
(236/314): perl-Term-ANSIColor-5.01-490.fc37.no 7.7 MB/s |  48 kB     00:00    
(237/314): perl-Text-ParseWords-3.31-489.fc37.n 3.0 MB/s |  16 kB     00:00    
(238/314): perl-Text-Tabs+Wrap-2021.0814-489.fc 6.7 MB/s |  22 kB     00:00    
(239/314): perl-Time-Local-1.300-489.fc37.noarc 8.5 MB/s |  33 kB     00:00    
(240/314): perl-constant-1.33-490.fc37.noarch.r 4.1 MB/s |  23 kB     00:00    
(241/314): perl-if-0.61.000-494.fc38.noarch.rpm 2.1 MB/s |  16 kB     00:00    
(242/314): perl-interpreter-5.36.0-494.fc38.x86 7.4 MB/s |  74 kB     00:00    
(243/314): perl-mro-1.26-494.fc38.x86_64.rpm    2.2 MB/s |  31 kB     00:00    
(244/314): perl-overload-1.35-494.fc38.noarch.r 4.1 MB/s |  48 kB     00:00    
(245/314): perl-parent-0.239-1.fc38.noarch.rpm  2.6 MB/s |  14 kB     00:00    
(246/314): perl-libs-5.36.0-494.fc38.x86_64.rpm  82 MB/s | 2.2 MB     00:00    
(247/314): perl-overloading-0.02-494.fc38.noarc 1.3 MB/s |  15 kB     00:00    
(248/314): pixman-0.40.0-6.fc37.x86_64.rpm      128 MB/s | 277 kB     00:00    
(249/314): perl-podlators-5.01-1.fc38.noarch.rp  17 MB/s | 125 kB     00:00    
(250/314): perl-vars-1.05-494.fc38.noarch.rpm   3.0 MB/s |  15 kB     00:00    
(251/314): pyproject-rpm-macros-1.5.1-1.fc38.no  18 MB/s |  40 kB     00:00    
(252/314): python-qt5-rpm-macros-5.15.6-10.fc38 1.5 MB/s | 8.9 kB     00:00    
(253/314): pulseaudio-libs-16.1-2.fc38.x86_64.r  52 MB/s | 687 kB     00:00    
(254/314): python-pip-wheel-22.3.1-1.fc38.noarc  98 MB/s | 1.4 MB     00:00    
(255/314): python-rpm-macros-3.11-7.fc38.noarch 2.5 MB/s |  20 kB     00:00    
(256/314): python-setuptools-wheel-65.5.1-1.fc3 115 MB/s | 715 kB     00:00    
(257/314): python3-3.11.1-3.fc38.x86_64.rpm      15 MB/s |  27 kB     00:00    
(258/314): python3-devel-3.11.1-3.fc38.x86_64.r  78 MB/s | 269 kB     00:00    
(259/314): python3-msgpack-1.0.4-3.fc37.x86_64.  16 MB/s |  96 kB     00:00    
(260/314): python3-mmtf-1.1.2-18.fc37.noarch.rp 4.5 MB/s |  77 kB     00:00    
(261/314): python3-packaging-21.3-7.fc38.noarch  15 MB/s |  98 kB     00:00    
(262/314): python3-pyparsing-3.0.9-2.fc37.noarc  43 MB/s | 262 kB     00:00    
(263/314): python3-pyqt5-sip-12.11.0-2.fc37.x86  16 MB/s |  70 kB     00:00    
(264/314): python3-qt5-5.15.6-10.fc38.x86_64.rp  56 MB/s | 1.2 MB     00:00    
(265/314): python3-qt5-base-5.15.6-10.fc38.x86_ 113 MB/s | 3.3 MB     00:00    
(266/314): python3-qt5-devel-5.15.6-10.fc38.x86  42 MB/s | 523 kB     00:00    
(267/314): python3-rpm-generators-14-1.fc38.noa 6.4 MB/s |  30 kB     00:00    
(268/314): python3-libs-3.11.1-3.fc38.x86_64.rp 137 MB/s | 9.6 MB     00:00    
(269/314): python3-rpm-macros-3.11-7.fc38.noarc 1.1 MB/s |  15 kB     00:00    
(270/314): python3-setuptools-65.5.1-1.fc38.noa 109 MB/s | 1.7 MB     00:00    
(271/314): qt-settings-37.0-1.fc38.noarch.rpm   4.2 MB/s |  11 kB     00:00    
(272/314): python3-simplejson-3.18.1-1.fc38.x86  33 MB/s | 329 kB     00:00    
(273/314): qt5-qtbase-common-5.15.8-2.fc38.noar 2.0 MB/s |  11 kB     00:00    
(274/314): qt5-qtbase-5.15.8-2.fc38.x86_64.rpm  133 MB/s | 3.6 MB     00:00    
(275/314): qt5-qtbase-devel-5.15.8-2.fc38.x86_6  98 MB/s | 3.5 MB     00:00    
(276/314): qt5-qtbase-gui-5.15.8-2.fc38.x86_64. 139 MB/s | 6.4 MB     00:00    
(277/314): qt5-qtdeclarative-5.15.8-1.fc38.x86_ 191 MB/s | 4.2 MB     00:00    
(278/314): qt5-qtconnectivity-5.15.8-1.fc38.x86  12 MB/s | 464 kB     00:00    
(279/314): qt5-qtsensors-5.15.8-1.fc38.x86_64.r  28 MB/s | 227 kB     00:00    
(280/314): qt5-qtmultimedia-5.15.8-1.fc38.x86_6  52 MB/s | 812 kB     00:00    
(281/314): qt5-qtlocation-5.15.8-1.fc38.x86_64.  99 MB/s | 3.0 MB     00:00    
(282/314): qt5-qtserialport-5.15.8-1.fc38.x86_6 6.5 MB/s |  65 kB     00:00    
(283/314): qt5-qtsvg-5.15.8-1.fc38.x86_64.rpm    27 MB/s | 186 kB     00:00    
(284/314): qt5-qttools-common-5.15.8-1.fc38.noa 3.2 MB/s |  11 kB     00:00    
(285/314): qt5-qttools-libs-help-5.15.8-1.fc38.  21 MB/s | 157 kB     00:00    
(286/314): qt5-qtwebchannel-5.15.8-1.fc38.x86_6  12 MB/s |  99 kB     00:00    
(287/314): qt5-qttools-libs-designer-5.15.8-1.f 137 MB/s | 2.7 MB     00:00    
(288/314): qt5-qtwebsockets-5.15.8-1.fc38.x86_6 8.8 MB/s |  87 kB     00:00    
(289/314): qt5-qtx11extras-5.15.8-1.fc38.x86_64 3.2 MB/s |  35 kB     00:00    
(290/314): rhash-1.4.3-1.fc38.x86_64.rpm        130 MB/s | 193 kB     00:00    
(291/314): qt5-rpm-macros-5.15.8-1.fc38.noarch. 1.9 MB/s | 9.7 kB     00:00    
(292/314): shared-mime-info-2.2-2.fc37.x86_64.r 108 MB/s | 381 kB     00:00    
(293/314): serd-0.30.12-2.fc37.x86_64.rpm        10 MB/s |  61 kB     00:00    
(294/314): qt5-qtxmlpatterns-5.15.8-1.fc38.x86_  79 MB/s | 996 kB     00:00    
(295/314): snappy-1.1.9-5.fc37.x86_64.rpm       5.5 MB/s |  36 kB     00:00    
(296/314): soundtouch-2.3.1-3.fc37.x86_64.rpm    18 MB/s |  94 kB     00:00    
(297/314): sord-0.16.10-1.fc37.x86_64.rpm       6.4 MB/s |  46 kB     00:00    
(298/314): vim-filesystem-9.0.1221-1.fc38.noarc 3.2 MB/s |  18 kB     00:00    
(299/314): sratom-0.6.10-2.fc37.x86_64.rpm      3.1 MB/s |  26 kB     00:00    
(300/314): sysprof-capture-devel-3.46.0-1.fc38. 7.1 MB/s |  58 kB     00:00    
(301/314): vulkan-loader-1.3.231.1-2.fc38.x86_6  34 MB/s | 145 kB     00:00    
(302/314): vulkan-loader-devel-1.3.231.1-2.fc38 1.5 MB/s | 9.1 kB     00:00    
(303/314): vulkan-headers-1.3.231.1-1.fc38.noar  96 MB/s | 1.0 MB     00:00    
(304/314): webrtc-audio-processing-0.3.1-9.fc37  40 MB/s | 304 kB     00:00    
(305/314): xcb-util-0.4.1-1.fc38.x86_64.rpm     3.4 MB/s |  18 kB     00:00    
(306/314): xcb-util-image-0.4.1-1.fc38.x86_64.r 3.5 MB/s |  19 kB     00:00    
(307/314): xcb-util-keysyms-0.4.1-1.fc38.x86_64 3.0 MB/s |  14 kB     00:00    
(308/314): xcb-util-renderutil-0.3.10-1.fc38.x8 3.8 MB/s |  17 kB     00:00    
(309/314): xcb-util-wm-0.4.2-1.fc38.x86_64.rpm   11 MB/s |  31 kB     00:00    
(310/314): xml-common-0.6.3-59.fc37.noarch.rpm   11 MB/s |  31 kB     00:00    
(311/314): xkeyboard-config-2.36-3.fc38.noarch. 140 MB/s | 956 kB     00:00    
(312/314): xorg-x11-proto-devel-2022.2-2.fc38.n  42 MB/s | 299 kB     00:00    
(313/314): xz-devel-5.2.9-1.fc38.x86_64.rpm     9.3 MB/s |  58 kB     00:00    
(314/314): zlib-devel-1.2.13-2.fc38.x86_64.rpm  8.9 MB/s |  45 kB     00:00    
--------------------------------------------------------------------------------
Total                                           145 MB/s | 230 MB     00:01     
Running transaction check
Transaction check succeeded.
Running transaction test
Transaction test succeeded.
Running transaction
  Preparing        :                                                        1/1 
  Installing       : cmake-filesystem-3.25.2-1.fc38.x86_64                1/314 
  Installing       : libpng-2:1.6.37-13.fc37.x86_64                       2/314 
  Installing       : nspr-4.35.0-3.fc38.x86_64                            3/314 
  Installing       : libX11-xcb-1.8.3-2.fc38.x86_64                       4/314 
  Installing       : expat-2.5.0-1.fc38.x86_64                            5/314 
  Installing       : zlib-devel-1.2.13-2.fc38.x86_64                      6/314 
  Installing       : libwayland-client-1.21.0-1.fc37.x86_64               7/314 
  Installing       : libogg-2:1.3.5-4.fc37.x86_64                         8/314 
  Installing       : libglvnd-1:1.6.0-1.fc38.x86_64                       9/314 
  Installing       : dbus-libs-1:1.14.4-1.fc38.x86_64                    10/314 
  Installing       : nss-util-3.87.0-1.fc38.x86_64                       11/314 
  Installing       : libquadmath-13.0.1-0.1.fc38.x86_64                  12/314 
  Installing       : libgfortran-13.0.1-0.1.fc38.x86_64                  13/314 
  Installing       : libmpc-1.3.1-1.fc38.x86_64                          14/314 
  Installing       : libjpeg-turbo-2.1.4-1.fc38.x86_64                   15/314 
  Installing       : libicu-72.1-1.fc38.x86_64                           16/314 
  Installing       : serd-0.30.12-2.fc37.x86_64                          17/314 
  Installing       : python-rpm-macros-3.11-7.fc38.noarch                18/314 
  Installing       : opus-1.3.1-11.fc37.x86_64                           19/314 
  Installing       : libaec-1.0.6-3.fc37.x86_64                          20/314 
  Installing       : mesa-libglapi-22.3.3-2.fc38.x86_64                  21/314 
  Installing       : gnutls-3.7.8-11.fc38.x86_64                         22/314 
  Installing       : glib2-2.74.1-3.fc38.x86_64                          23/314 
  Installing       : libgudev-237-3.fc37.x86_64                          24/314 
  Installing       : libsoup3-3.2.2-1.fc38.x86_64                        25/314 
  Installing       : gssdp-1.6.2-1.fc38.x86_64                           26/314 
  Installing       : hdf5-1.12.1-10.fc37.x86_64                          27/314 
  Installing       : python3-rpm-macros-3.11-7.fc38.noarch               28/314 
  Installing       : libvorbis-1:1.3.7-6.fc37.x86_64                     29/314 
  Installing       : xorg-x11-proto-devel-2022.2-2.fc38.noarch           30/314 
  Running scriptlet: xml-common-0.6.3-59.fc37.noarch                     31/314 
  Installing       : xml-common-0.6.3-59.fc37.noarch                     31/314 
  Installing       : vulkan-loader-1.3.231.1-2.fc38.x86_64               32/314 
  Installing       : qt5-qttools-common-5.15.8-1.fc38.noarch             33/314 
  Installing       : pcre2-utf16-10.42-1.fc38.x86_64                     34/314 
  Installing       : orc-0.4.33-1.fc38.x86_64                            35/314 
  Installing       : libxshmfence-1.3-11.fc37.x86_64                     36/314 
  Installing       : libwayland-server-1.21.0-1.fc37.x86_64              37/314 
  Installing       : libdvdread-6.1.3-2.fc37.x86_64                      38/314 
  Installing       : libXau-1.0.11-1.fc38.x86_64                         39/314 
  Installing       : libxcb-1.13.1-11.fc38.x86_64                        40/314 
  Installing       : libICE-1.0.10-9.fc37.x86_64                         41/314 
  Installing       : kernel-headers-6.2.0-0.rc4.git0.1.fc38.x86_64       42/314 
  Installing       : gsm-1.0.22-1.fc37.x86_64                            43/314 
  Installing       : gl-manpages-1.1-25.20190306.fc37.noarch             44/314 
  Installing       : fonts-filesystem-1:2.0.5-10.fc38.noarch             45/314 
  Installing       : flexiblas-3.3.0-1.fc38.x86_64                       46/314 
  Installing       : emacs-filesystem-1:28.2-1.fc38.noarch               47/314 
  Installing       : alsa-lib-1.2.8-2.fc38.x86_64                        48/314 
  Installing       : graphite2-1.3.14-11.fc38.x86_64                     49/314 
  Installing       : freetype-2.12.1-3.fc37.x86_64                       50/314 
  Installing       : harfbuzz-6.0.0-2.fc38.x86_64                        51/314 
  Installing       : harfbuzz-icu-6.0.0-2.fc38.x86_64                    52/314 
  Installing       : graphite2-devel-1.3.14-11.fc38.x86_64               53/314 
  Installing       : libSM-1.2.3-11.fc37.x86_64                          54/314 
  Installing       : xcb-util-0.4.1-1.fc38.x86_64                        55/314 
  Installing       : xcb-util-image-0.4.1-1.fc38.x86_64                  56/314 
  Installing       : xcb-util-keysyms-0.4.1-1.fc38.x86_64                57/314 
  Installing       : xcb-util-renderutil-0.3.10-1.fc38.x86_64            58/314 
  Installing       : xcb-util-wm-0.4.2-1.fc38.x86_64                     59/314 
  Installing       : libXau-devel-1.0.11-1.fc38.x86_64                   60/314 
  Installing       : libxcb-devel-1.13.1-11.fc38.x86_64                  61/314 
  Installing       : libdvdnav-6.1.1-4.fc37.x86_64                       62/314 
  Installing       : iso-codes-4.12.0-2.fc38.noarch                      63/314 
  Installing       : pyproject-rpm-macros-1.5.1-1.fc38.noarch            64/314 
  Installing       : graphene-1.10.6-4.fc37.x86_64                       65/314 
  Installing       : json-glib-1.6.6-3.fc37.x86_64                       66/314 
  Installing       : shared-mime-info-2.2-2.fc37.x86_64                  67/314 
  Running scriptlet: shared-mime-info-2.2-2.fc37.x86_64                  67/314 
  Installing       : gdk-pixbuf2-2.42.10-1.fc38.x86_64                   68/314 
  Installing       : libaec-devel-1.0.6-3.fc37.x86_64                    69/314 
  Installing       : libicu-devel-72.1-1.fc38.x86_64                     70/314 
  Installing       : hdf-libs-4.2.15-11.fc37.x86_64                      71/314 
  Installing       : cpp-13.0.1-0.1.fc38.x86_64                          72/314 
  Installing       : nss-softokn-freebl-3.87.0-1.fc38.x86_64             73/314 
  Installing       : nss-softokn-3.87.0-1.fc38.x86_64                    74/314 
  Installing       : avahi-libs-0.8-19.fc38.x86_64                       75/314 
  Installing       : cups-libs-1:2.4.2-5.fc38.x86_64                     76/314 
  Installing       : libglvnd-opengl-1:1.6.0-1.fc38.x86_64               77/314 
  Installing       : flac-libs-1.4.2-1.fc38.x86_64                       78/314 
  Installing       : libtheora-1:1.1.1-32.fc37.x86_64                    79/314 
  Installing       : libwayland-cursor-1.21.0-1.fc37.x86_64              80/314 
  Installing       : libpng-devel-2:1.6.37-13.fc37.x86_64                81/314 
  Installing       : xz-devel-5.2.9-1.fc38.x86_64                        82/314 
  Installing       : xkeyboard-config-2.36-3.fc38.noarch                 83/314 
  Installing       : libxkbcommon-1.5.0-1.fc38.x86_64                    84/314 
  Installing       : libxkbcommon-x11-1.5.0-1.fc38.x86_64                85/314 
  Installing       : webrtc-audio-processing-0.3.1-9.fc37.x86_64         86/314 
  Installing       : vulkan-headers-1.3.231.1-1.fc38.noarch              87/314 
  Installing       : vulkan-loader-devel-1.3.231.1-2.fc38.x86_64         88/314 
  Installing       : vim-filesystem-2:9.0.1221-1.fc38.noarch             89/314 
  Installing       : sysprof-capture-devel-3.46.0-1.fc38.x86_64          90/314 
  Installing       : soundtouch-2.3.1-3.fc37.x86_64                      91/314 
  Installing       : snappy-1.1.9-5.fc37.x86_64                          92/314 
  Installing       : blosc-1.21.2-1.fc38.x86_64                          93/314 
  Installing       : netcdf-4.9.0-4.fc38.x86_64                          94/314 
  Installing       : rhash-1.4.3-1.fc38.x86_64                           95/314 
  Installing       : qt-settings-37.0-1.fc38.noarch                      96/314 
  Installing       : qt5-qtbase-common-5.15.8-2.fc38.noarch              97/314 
  Running scriptlet: qt5-qtbase-5.15.8-2.fc38.x86_64                     98/314 
  Installing       : qt5-qtbase-5.15.8-2.fc38.x86_64                     98/314 
  Running scriptlet: qt5-qtbase-5.15.8-2.fc38.x86_64                     98/314 
  Installing       : qt5-qtserialport-5.15.8-1.fc38.x86_64               99/314 
  Installing       : qt5-qtwebsockets-5.15.8-1.fc38.x86_64              100/314 
  Installing       : python-setuptools-wheel-65.5.1-1.fc38.noarch       101/314 
  Installing       : python-qt5-rpm-macros-5.15.6-10.fc38.noarch        102/314 
  Installing       : python-pip-wheel-22.3.1-1.fc38.noarch              103/314 
  Installing       : pixman-0.40.0-6.fc37.x86_64                        104/314 
  Installing       : pcre2-utf32-10.42-1.fc38.x86_64                    105/314 
  Installing       : pcre2-devel-10.42-1.fc38.x86_64                    106/314 
  Installing       : pcre-8.45-1.fc37.2.x86_64                          107/314 
  Installing       : sord-0.16.10-1.fc37.x86_64                         108/314 
  Installing       : sratom-0.6.10-2.fc37.x86_64                        109/314 
  Installing       : lilv-libs-0.24.14-4.fc38.x86_64                    110/314 
  Installing       : openblas-0.3.21-4.fc38.x86_64                      111/314 
  Installing       : openblas-openmp-0.3.21-4.fc38.x86_64               112/314 
  Installing       : flexiblas-netlib-3.3.0-1.fc38.x86_64               113/314 
  Installing       : flexiblas-openblas-openmp-3.3.0-1.fc38.x86_64      114/314 
  Installing       : openal-soft-1.22.2-6.fc38.x86_64                   115/314 
  Installing       : ncurses-6.4-2.20230114.fc38.x86_64                 116/314 
  Installing       : mtdev-1.1.6-4.fc37.x86_64                          117/314 
  Installing       : msgpack-3.1.0-10.fc37.x86_64                       118/314 
  Installing       : msgpack-devel-3.1.0-10.fc37.x86_64                 119/314 
  Installing       : mpg123-libs-1.31.2-1.fc38.x86_64                   120/314 
  Installing       : mpdecimal-2.5.1-4.fc37.x86_64                      121/314 
  Installing       : libwebp-1.3.0-1.fc38.x86_64                        122/314 
  Installing       : libwayland-egl-1.21.0-1.fc37.x86_64                123/314 
  Installing       : libwacom-data-2.4.0-1.fc37.noarch                  124/314 
  Installing       : libvisual-1:0.4.0-37.fc38.x86_64                   125/314 
  Installing       : libuv-1:1.44.2-2.fc37.x86_64                       126/314 
  Installing       : libusb1-1.0.26-1.fc38.x86_64                       127/314 
  Installing       : libunwind-1.6.2-5.fc38.x86_64                      128/314 
  Installing       : libtool-ltdl-2.4.7-5.fc38.x86_64                   129/314 
  Installing       : libstemmer-2.2.0-4.fc38.x86_64                     130/314 
  Installing       : libstdc++-devel-13.0.1-0.1.fc38.x86_64             131/314 
  Installing       : libsepol-devel-3.5-0.rc1.1.fc38.x86_64             132/314 
  Installing       : libselinux-devel-3.5-0.rc1.1.fc38.1.x86_64         133/314 
  Installing       : libglvnd-core-devel-1:1.6.0-1.fc38.x86_64          134/314 
  Installing       : libffi-devel-3.4.4-1.fc38.x86_64                   135/314 
  Installing       : libdatrie-0.2.13-4.fc37.x86_64                     136/314 
  Installing       : libthai-0.1.29-3.fc37.x86_64                       137/314 
  Installing       : libblkid-devel-2.38.1-3.fc38.x86_64                138/314 
  Installing       : libmount-devel-2.38.1-3.fc38.x86_64                139/314 
  Installing       : libb2-0.98.1-7.fc37.x86_64                         140/314 
  Installing       : python3-3.11.1-3.fc38.x86_64                       141/314 
  Installing       : python3-libs-3.11.1-3.fc38.x86_64                  142/314 
  Installing       : gstreamer1-1.20.5-1.fc38.x86_64                    143/314 
  Installing       : cmake-rpm-macros-3.25.2-1.fc38.noarch              144/314 
  Installing       : crypto-policies-scripts-20221215-2.gita4c31a3.fc   145/314 
  Installing       : nss-sysinit-3.87.0-1.fc38.x86_64                   146/314 
  Installing       : nss-3.87.0-1.fc38.x86_64                           147/314 
  Running scriptlet: nss-3.87.0-1.fc38.x86_64                           147/314 
  Installing       : libsrtp-2.3.0-9.fc37.x86_64                        148/314 
  Installing       : glib2-devel-2.74.1-3.fc38.x86_64                   149/314 
  Installing       : python3-dbus-1.3.2-2.fc38.x86_64                   150/314 
  Installing       : libwacom-2.4.0-1.fc37.x86_64                       151/314 
  Installing       : python3-msgpack-1.0.4-3.fc37.x86_64                152/314 
  Installing       : python3-pyparsing-3.0.9-2.fc37.noarch              153/314 
  Installing       : python3-packaging-21.3-7.fc38.noarch               154/314 
  Installing       : python3-rpm-generators-14-1.fc38.noarch            155/314 
  Installing       : python3-pyqt5-sip-12.11.0-2.fc37.x86_64            156/314 
  Installing       : libasyncns-0.8-23.fc37.x86_64                      157/314 
  Installing       : libX11-common-1.8.3-2.fc38.noarch                  158/314 
  Installing       : libX11-1.8.3-2.fc38.x86_64                         159/314 
  Installing       : libXext-1.3.5-1.fc38.x86_64                        160/314 
  Installing       : libXrender-0.9.11-1.fc38.x86_64                    161/314 
  Installing       : libXfixes-6.0.0-4.fc37.x86_64                      162/314 
  Installing       : libXi-1.8-3.fc37.x86_64                            163/314 
  Installing       : libXv-1.0.11-17.fc37.x86_64                        164/314 
  Installing       : libXxf86vm-1.1.5-1.fc38.x86_64                     165/314 
  Installing       : libX11-devel-1.8.3-2.fc38.x86_64                   166/314 
  Installing       : lcms2-2.14-1.fc38.x86_64                           167/314 
  Installing       : lame-libs-3.100-13.fc37.x86_64                     168/314 
  Installing       : libsndfile-1.1.0-5.fc38.x86_64                     169/314 
  Installing       : pulseaudio-libs-16.1-2.fc38.x86_64                 170/314 
  Installing       : hwdata-0.366-1.fc38.noarch                         171/314 
  Installing       : libpciaccess-0.16-7.fc37.x86_64                    172/314 
  Installing       : libdrm-2.4.114-1.fc38.x86_64                       173/314 
  Installing       : mesa-libgbm-22.3.3-2.fc38.x86_64                   174/314 
  Installing       : libglvnd-egl-1:1.6.0-1.fc38.x86_64                 175/314 
  Installing       : mesa-libEGL-22.3.3-2.fc38.x86_64                   176/314 
  Installing       : mesa-libGL-22.3.3-2.fc38.x86_64                    177/314 
  Installing       : libglvnd-glx-1:1.6.0-1.fc38.x86_64                 178/314 
  Installing       : freeglut-3.4.0-1.fc38.x86_64                       179/314 
  Installing       : glx-utils-8.4.0-14.20210504git0f9e7d9.fc37.x86_6   180/314 
  Installing       : libGLEW-2.2.0-3.fc37.x86_64                        181/314 
  Installing       : mesa-libGLU-9.0.1-7.fc37.x86_64                    182/314 
  Installing       : libglvnd-gles-1:1.6.0-1.fc38.x86_64                183/314 
  Installing       : libglvnd-devel-1:1.6.0-1.fc38.x86_64               184/314 
  Installing       : mesa-libGLU-devel-9.0.1-7.fc37.x86_64              185/314 
  Installing       : mesa-libEGL-devel-22.3.3-2.fc38.x86_64             186/314 
  Installing       : libpciaccess-devel-0.16-7.fc37.x86_64              187/314 
  Installing       : libdrm-devel-2.4.114-1.fc38.x86_64                 188/314 
  Installing       : mesa-libGL-devel-22.3.3-2.fc38.x86_64              189/314 
  Running scriptlet: groff-base-1.22.4-10.fc37.x86_64                   190/314 
  Installing       : groff-base-1.22.4-10.fc37.x86_64                   190/314 
  Running scriptlet: groff-base-1.22.4-10.fc37.x86_64                   190/314 
  Installing       : perl-Text-Tabs+Wrap-2021.0814-489.fc37.noarch      191/314 
  Installing       : perl-if-0.61.000-494.fc38.noarch                   192/314 
  Installing       : perl-Time-Local-2:1.300-489.fc37.noarch            193/314 
  Installing       : perl-File-Path-2.18-489.fc37.noarch                194/314 
  Installing       : perl-Pod-Escapes-1:1.07-489.fc37.noarch            195/314 
  Installing       : perl-Class-Struct-0.66-494.fc38.noarch             196/314 
  Installing       : perl-POSIX-2.03-494.fc38.x86_64                    197/314 
  Installing       : perl-Term-ANSIColor-5.01-490.fc37.noarch           198/314 
  Installing       : perl-IPC-Open3-1.22-494.fc38.noarch                199/314 
  Installing       : perl-HTTP-Tiny-0.082-1.fc37.noarch                 200/314 
  Installing       : perl-File-Temp-1:0.231.100-489.fc37.noarch         201/314 
  Installing       : perl-Term-Cap-1.17-489.fc37.noarch                 202/314 
  Installing       : perl-Pod-Simple-1:3.43-490.fc37.noarch             203/314 
  Installing       : perl-Socket-4:2.036-1.fc38.x86_64                  204/314 
  Installing       : perl-SelectSaver-1.02-494.fc38.noarch              205/314 
  Installing       : perl-Symbol-1.09-494.fc38.noarch                   206/314 
  Installing       : perl-File-stat-1.12-494.fc38.noarch                207/314 
  Installing       : perl-podlators-1:5.01-1.fc38.noarch                208/314 
  Installing       : perl-Pod-Perldoc-3.28.01-490.fc37.noarch           209/314 
  Installing       : perl-Fcntl-1.15-494.fc38.x86_64                    210/314 
  Installing       : perl-Text-ParseWords-3.31-489.fc37.noarch          211/314 
  Installing       : perl-mro-1.26-494.fc38.x86_64                      212/314 
  Installing       : perl-IO-1.50-494.fc38.x86_64                       213/314 
  Installing       : perl-overloading-0.02-494.fc38.noarch              214/314 
  Installing       : perl-Pod-Usage-4:2.03-3.fc37.noarch                215/314 
  Installing       : perl-Errno-1.36-494.fc38.x86_64                    216/314 
  Installing       : perl-File-Basename-2.85-494.fc38.noarch            217/314 
  Installing       : perl-Getopt-Std-1.13-494.fc38.noarch               218/314 
  Installing       : perl-MIME-Base64-3.16-489.fc37.x86_64              219/314 
  Installing       : perl-Scalar-List-Utils-5:1.63-489.fc38.x86_64      220/314 
  Installing       : perl-constant-1.33-490.fc37.noarch                 221/314 
  Installing       : perl-Storable-1:3.26-489.fc37.x86_64               222/314 
  Installing       : perl-overload-1.35-494.fc38.noarch                 223/314 
  Installing       : perl-parent-1:0.239-1.fc38.noarch                  224/314 
  Installing       : perl-vars-1.05-494.fc38.noarch                     225/314 
  Installing       : perl-Getopt-Long-1:2.54-1.fc38.noarch              226/314 
  Installing       : perl-Carp-1.52-489.fc37.noarch                     227/314 
  Installing       : perl-Exporter-5.77-489.fc37.noarch                 228/314 
  Installing       : perl-PathTools-3.84-489.fc37.x86_64                229/314 
  Installing       : perl-DynaLoader-1.52-494.fc38.x86_64               230/314 
  Installing       : perl-Encode-4:3.19-492.fc38.x86_64                 231/314 
  Installing       : perl-libs-4:5.36.0-494.fc38.x86_64                 232/314 
  Installing       : perl-interpreter-4:5.36.0-494.fc38.x86_64          233/314 
  Installing       : perl-English-1.11-494.fc38.noarch                  234/314 
  Installing       : perl-File-Find-1.40-494.fc38.noarch                235/314 
  Installing       : google-noto-fonts-common-20201206^1.git0c78c8329   236/314 
  Installing       : google-noto-sans-vf-fonts-20201206^1.git0c78c832   237/314 
  Installing       : langpacks-core-font-en-3.0-27.fc38.noarch          238/314 
  Installing       : fontconfig-2.14.1-2.fc38.x86_64                    239/314 
  Running scriptlet: fontconfig-2.14.1-2.fc38.x86_64                    239/314 
  Installing       : cairo-1.17.6-2.fc37.x86_64                         240/314 
  Installing       : cairo-gobject-1.17.6-2.fc37.x86_64                 241/314 
  Installing       : libXft-2.3.6-1.fc38.x86_64                         242/314 
  Installing       : gc-8.2.2-1.fc38.x86_64                             243/314 
  Installing       : guile22-2.2.7-6.fc37.x86_64                        244/314 
  Installing       : make-1:4.4-1.fc38.x86_64                           245/314 
  Installing       : fribidi-1.0.12-2.fc37.x86_64                       246/314 
  Installing       : pango-1.50.12-2.fc38.x86_64                        247/314 
  Installing       : librsvg2-2.55.1-3.fc38.x86_64                      248/314 
  Installing       : fdk-aac-free-2.0.0-9.fc37.x86_64                   249/314 
  Installing       : dbus-common-1:1.14.4-1.fc38.noarch                 250/314 
  Running scriptlet: dbus-common-1:1.14.4-1.fc38.noarch                 250/314 
  Running scriptlet: dbus-broker-32-1.fc37.x86_64                       251/314 
  Installing       : dbus-broker-32-1.fc37.x86_64                       251/314 
  Running scriptlet: dbus-broker-32-1.fc37.x86_64                       251/314 
  Installing       : dbus-1:1.14.4-1.fc38.x86_64                        252/314 
  Installing       : gupnp-1.6.3-1.fc38.x86_64                          253/314 
  Installing       : gupnp-igd-1.2.0-7.fc38.x86_64                      254/314 
  Installing       : libnice-0.1.21-2.fc38.x86_64                       255/314 
  Installing       : cdparanoia-libs-10.2-40.fc37.x86_64                256/314 
  Installing       : gstreamer1-plugins-base-1.20.5-1.fc38.x86_64       257/314 
  Installing       : bzip2-devel-1.0.8-12.fc37.x86_64                   258/314 
  Installing       : bluez-libs-5.66-4.fc38.x86_64                      259/314 
  Installing       : annobin-docs-11.06-2.fc38.noarch                   260/314 
  Installing       : mesa-filesystem-22.3.3-2.fc38.x86_64               261/314 
  Installing       : libva-2.17.0-1.fc38.x86_64                         262/314 
  Installing       : gstreamer1-plugins-bad-free-1.20.5-2.fc38.x86_64   263/314 
  Installing       : libevdev-1.13.0-2.fc38.x86_64                      264/314 
  Installing       : libinput-1.22.1-2.fc38.x86_64                      265/314 
  Running scriptlet: libinput-1.22.1-2.fc38.x86_64                      265/314 
  Installing       : qt5-qtbase-gui-5.15.8-2.fc38.x86_64                266/314 
  Installing       : qt5-qtdeclarative-5.15.8-1.fc38.x86_64             267/314 
  Installing       : python3-qt5-base-5.15.6-10.fc38.x86_64             268/314 
  Installing       : qt5-qtconnectivity-5.15.8-1.fc38.x86_64            269/314 
  Installing       : qt5-qtlocation-5.15.8-1.fc38.x86_64                270/314 
  Installing       : qt5-qtmultimedia-5.15.8-1.fc38.x86_64              271/314 
  Installing       : qt5-qtsensors-5.15.8-1.fc38.x86_64                 272/314 
  Installing       : qt5-qtwebchannel-5.15.8-1.fc38.x86_64              273/314 
  Installing       : qt5-qtxmlpatterns-5.15.8-1.fc38.x86_64             274/314 
  Installing       : qt5-qtsvg-5.15.8-1.fc38.x86_64                     275/314 
  Installing       : qt5-qttools-libs-designer-5.15.8-1.fc38.x86_64     276/314 
  Installing       : qt5-qttools-libs-help-5.15.8-1.fc38.x86_64         277/314 
  Installing       : qt5-qtx11extras-5.15.8-1.fc38.x86_64               278/314 
  Installing       : python3-qt5-5.15.6-10.fc38.x86_64                  279/314 
  Installing       : libcurl-devel-7.87.0-3.fc38.x86_64                 280/314 
  Installing       : jsoncpp-1.9.5-4.fc38.x86_64                        281/314 
  Installing       : cmake-data-3.25.2-1.fc38.noarch                    282/314 
  Installing       : cmake-3.25.2-1.fc38.x86_64                         283/314 
  Installing       : glibc-headers-x86-2.36.9000-23.fc38.noarch         284/314 
  Installing       : libxcrypt-devel-4.4.33-5.fc38.x86_64               285/314 
  Installing       : glibc-devel-2.36.9000-23.fc38.x86_64               286/314 
  Installing       : gcc-13.0.1-0.1.fc38.x86_64                         287/314 
  Running scriptlet: gcc-13.0.1-0.1.fc38.x86_64                         287/314 
  Installing       : gcc-c++-13.0.1-0.1.fc38.x86_64                     288/314 
  Installing       : qt5-rpm-macros-5.15.8-1.fc38.noarch                289/314 
  Installing       : qt5-qtbase-devel-5.15.8-2.fc38.x86_64              290/314 
  Installing       : libquadmath-devel-13.0.1-0.1.fc38.x86_64           291/314 
  Installing       : gcc-gfortran-13.0.1-0.1.fc38.x86_64                292/314 
  Installing       : hdf5-devel-1.12.1-10.fc37.x86_64                   293/314 
  Installing       : brotli-1.0.9-11.fc38.x86_64                        294/314 
  Installing       : brotli-devel-1.0.9-11.fc38.x86_64                  295/314 
  Installing       : harfbuzz-devel-6.0.0-2.fc38.x86_64                 296/314 
  Installing       : freetype-devel-2.12.1-3.fc37.x86_64                297/314 
  Installing       : netcdf-devel-4.9.0-4.fc38.x86_64                   298/314 
  Installing       : python3-qt5-devel-5.15.6-10.fc38.x86_64            299/314 
  Installing       : annobin-plugin-gcc-11.06-2.fc38.x86_64             300/314 
  Running scriptlet: annobin-plugin-gcc-11.06-2.fc38.x86_64             300/314 
  Installing       : gcc-plugin-annobin-13.0.1-0.1.fc38.x86_64          301/314 
  Installing       : freeglut-devel-3.4.0-1.fc38.x86_64                 302/314 
  Installing       : glew-devel-2.2.0-3.fc37.x86_64                     303/314 
  Installing       : python3-devel-3.11.1-3.fc38.x86_64                 304/314 
  Installing       : python3-mmtf-1.1.2-18.fc37.noarch                  305/314 
  Installing       : python3-numpy-1:1.23.5-2.fc38.x86_64               306/314 
  Installing       : python3-setuptools-65.5.1-1.fc38.noarch            307/314 
  Installing       : python3-simplejson-3.18.1-1.fc38.x86_64            308/314 
  Installing       : libappstream-glib-0.8.2-1.fc38.x86_64              309/314 
  Installing       : mmtf-cpp-devel-1.1.0-1.fc38.x86_64                 310/314 
  Installing       : libxml2-devel-2.10.3-3.fc38.x86_64                 311/314 
  Installing       : desktop-file-utils-0.26-7.fc37.x86_64              312/314 
  Installing       : catch-devel-2.13.8-3.fc37.x86_64                   313/314 
  Installing       : glm-devel-0.9.9.8-5.fc38.noarch                    314/314 
  Running scriptlet: crypto-policies-scripts-20221215-2.gita4c31a3.fc   314/314 
  Running scriptlet: nss-3.87.0-1.fc38.x86_64                           314/314 
  Running scriptlet: fontconfig-2.14.1-2.fc38.x86_64                    314/314 
  Running scriptlet: glm-devel-0.9.9.8-5.fc38.noarch                    314/314 
  Verifying        : brotli-1.0.9-11.fc38.x86_64                          1/314 
  Verifying        : brotli-devel-1.0.9-11.fc38.x86_64                    2/314 
  Verifying        : cmake-3.25.2-1.fc38.x86_64                           3/314 
  Verifying        : cmake-data-3.25.2-1.fc38.noarch                      4/314 
  Verifying        : cmake-filesystem-3.25.2-1.fc38.x86_64                5/314 
  Verifying        : cmake-rpm-macros-3.25.2-1.fc38.noarch                6/314 
  Verifying        : crypto-policies-scripts-20221215-2.gita4c31a3.fc     7/314 
  Verifying        : glib2-2.74.1-3.fc38.x86_64                           8/314 
  Verifying        : glib2-devel-2.74.1-3.fc38.x86_64                     9/314 
  Verifying        : glibc-devel-2.36.9000-23.fc38.x86_64                10/314 
  Verifying        : glibc-headers-x86-2.36.9000-23.fc38.noarch          11/314 
  Verifying        : gnutls-3.7.8-11.fc38.x86_64                         12/314 
  Verifying        : graphite2-1.3.14-11.fc38.x86_64                     13/314 
  Verifying        : graphite2-devel-1.3.14-11.fc38.x86_64               14/314 
  Verifying        : gstreamer1-plugins-bad-free-1.20.5-2.fc38.x86_64    15/314 
  Verifying        : jsoncpp-1.9.5-4.fc38.x86_64                         16/314 
  Verifying        : libcurl-devel-7.87.0-3.fc38.x86_64                  17/314 
  Verifying        : libevdev-1.13.0-2.fc38.x86_64                       18/314 
  Verifying        : libinput-1.22.1-2.fc38.x86_64                       19/314 
  Verifying        : libxcb-1.13.1-11.fc38.x86_64                        20/314 
  Verifying        : libxcb-devel-1.13.1-11.fc38.x86_64                  21/314 
  Verifying        : libxml2-devel-2.10.3-3.fc38.x86_64                  22/314 
  Verifying        : lilv-libs-0.24.14-4.fc38.x86_64                     23/314 
  Verifying        : mesa-filesystem-22.3.3-2.fc38.x86_64                24/314 
  Verifying        : mesa-libEGL-22.3.3-2.fc38.x86_64                    25/314 
  Verifying        : mesa-libEGL-devel-22.3.3-2.fc38.x86_64              26/314 
  Verifying        : mesa-libGL-22.3.3-2.fc38.x86_64                     27/314 
  Verifying        : mesa-libGL-devel-22.3.3-2.fc38.x86_64               28/314 
  Verifying        : mesa-libgbm-22.3.3-2.fc38.x86_64                    29/314 
  Verifying        : mesa-libglapi-22.3.3-2.fc38.x86_64                  30/314 
  Verifying        : python3-dbus-1.3.2-2.fc38.x86_64                    31/314 
  Verifying        : python3-numpy-1:1.23.5-2.fc38.x86_64                32/314 
  Verifying        : alsa-lib-1.2.8-2.fc38.x86_64                        33/314 
  Verifying        : annobin-docs-11.06-2.fc38.noarch                    34/314 
  Verifying        : annobin-plugin-gcc-11.06-2.fc38.x86_64              35/314 
  Verifying        : avahi-libs-0.8-19.fc38.x86_64                       36/314 
  Verifying        : blosc-1.21.2-1.fc38.x86_64                          37/314 
  Verifying        : bluez-libs-5.66-4.fc38.x86_64                       38/314 
  Verifying        : bzip2-devel-1.0.8-12.fc37.x86_64                    39/314 
  Verifying        : cairo-1.17.6-2.fc37.x86_64                          40/314 
  Verifying        : cairo-gobject-1.17.6-2.fc37.x86_64                  41/314 
  Verifying        : catch-devel-2.13.8-3.fc37.x86_64                    42/314 
  Verifying        : cdparanoia-libs-10.2-40.fc37.x86_64                 43/314 
  Verifying        : cpp-13.0.1-0.1.fc38.x86_64                          44/314 
  Verifying        : cups-libs-1:2.4.2-5.fc38.x86_64                     45/314 
  Verifying        : dbus-1:1.14.4-1.fc38.x86_64                         46/314 
  Verifying        : dbus-broker-32-1.fc37.x86_64                        47/314 
  Verifying        : dbus-common-1:1.14.4-1.fc38.noarch                  48/314 
  Verifying        : dbus-libs-1:1.14.4-1.fc38.x86_64                    49/314 
  Verifying        : desktop-file-utils-0.26-7.fc37.x86_64               50/314 
  Verifying        : emacs-filesystem-1:28.2-1.fc38.noarch               51/314 
  Verifying        : expat-2.5.0-1.fc38.x86_64                           52/314 
  Verifying        : fdk-aac-free-2.0.0-9.fc37.x86_64                    53/314 
  Verifying        : flac-libs-1.4.2-1.fc38.x86_64                       54/314 
  Verifying        : flexiblas-3.3.0-1.fc38.x86_64                       55/314 
  Verifying        : flexiblas-netlib-3.3.0-1.fc38.x86_64                56/314 
  Verifying        : flexiblas-openblas-openmp-3.3.0-1.fc38.x86_64       57/314 
  Verifying        : fontconfig-2.14.1-2.fc38.x86_64                     58/314 
  Verifying        : fonts-filesystem-1:2.0.5-10.fc38.noarch             59/314 
  Verifying        : freeglut-3.4.0-1.fc38.x86_64                        60/314 
  Verifying        : freeglut-devel-3.4.0-1.fc38.x86_64                  61/314 
  Verifying        : freetype-2.12.1-3.fc37.x86_64                       62/314 
  Verifying        : freetype-devel-2.12.1-3.fc37.x86_64                 63/314 
  Verifying        : fribidi-1.0.12-2.fc37.x86_64                        64/314 
  Verifying        : gc-8.2.2-1.fc38.x86_64                              65/314 
  Verifying        : gcc-13.0.1-0.1.fc38.x86_64                          66/314 
  Verifying        : gcc-c++-13.0.1-0.1.fc38.x86_64                      67/314 
  Verifying        : gcc-gfortran-13.0.1-0.1.fc38.x86_64                 68/314 
  Verifying        : gcc-plugin-annobin-13.0.1-0.1.fc38.x86_64           69/314 
  Verifying        : gdk-pixbuf2-2.42.10-1.fc38.x86_64                   70/314 
  Verifying        : gl-manpages-1.1-25.20190306.fc37.noarch             71/314 
  Verifying        : glew-devel-2.2.0-3.fc37.x86_64                      72/314 
  Verifying        : glm-devel-0.9.9.8-5.fc38.noarch                     73/314 
  Verifying        : glx-utils-8.4.0-14.20210504git0f9e7d9.fc37.x86_6    74/314 
  Verifying        : google-noto-fonts-common-20201206^1.git0c78c8329    75/314 
  Verifying        : google-noto-sans-vf-fonts-20201206^1.git0c78c832    76/314 
  Verifying        : graphene-1.10.6-4.fc37.x86_64                       77/314 
  Verifying        : groff-base-1.22.4-10.fc37.x86_64                    78/314 
  Verifying        : gsm-1.0.22-1.fc37.x86_64                            79/314 
  Verifying        : gssdp-1.6.2-1.fc38.x86_64                           80/314 
  Verifying        : gstreamer1-1.20.5-1.fc38.x86_64                     81/314 
  Verifying        : gstreamer1-plugins-base-1.20.5-1.fc38.x86_64        82/314 
  Verifying        : guile22-2.2.7-6.fc37.x86_64                         83/314 
  Verifying        : gupnp-1.6.3-1.fc38.x86_64                           84/314 
  Verifying        : gupnp-igd-1.2.0-7.fc38.x86_64                       85/314 
  Verifying        : harfbuzz-6.0.0-2.fc38.x86_64                        86/314 
  Verifying        : harfbuzz-devel-6.0.0-2.fc38.x86_64                  87/314 
  Verifying        : harfbuzz-icu-6.0.0-2.fc38.x86_64                    88/314 
  Verifying        : hdf-libs-4.2.15-11.fc37.x86_64                      89/314 
  Verifying        : hdf5-1.12.1-10.fc37.x86_64                          90/314 
  Verifying        : hdf5-devel-1.12.1-10.fc37.x86_64                    91/314 
  Verifying        : hwdata-0.366-1.fc38.noarch                          92/314 
  Verifying        : iso-codes-4.12.0-2.fc38.noarch                      93/314 
  Verifying        : json-glib-1.6.6-3.fc37.x86_64                       94/314 
  Verifying        : kernel-headers-6.2.0-0.rc4.git0.1.fc38.x86_64       95/314 
  Verifying        : lame-libs-3.100-13.fc37.x86_64                      96/314 
  Verifying        : langpacks-core-font-en-3.0-27.fc38.noarch           97/314 
  Verifying        : lcms2-2.14-1.fc38.x86_64                            98/314 
  Verifying        : libGLEW-2.2.0-3.fc37.x86_64                         99/314 
  Verifying        : libICE-1.0.10-9.fc37.x86_64                        100/314 
  Verifying        : libSM-1.2.3-11.fc37.x86_64                         101/314 
  Verifying        : libX11-1.8.3-2.fc38.x86_64                         102/314 
  Verifying        : libX11-common-1.8.3-2.fc38.noarch                  103/314 
  Verifying        : libX11-devel-1.8.3-2.fc38.x86_64                   104/314 
  Verifying        : libX11-xcb-1.8.3-2.fc38.x86_64                     105/314 
  Verifying        : libXau-1.0.11-1.fc38.x86_64                        106/314 
  Verifying        : libXau-devel-1.0.11-1.fc38.x86_64                  107/314 
  Verifying        : libXext-1.3.5-1.fc38.x86_64                        108/314 
  Verifying        : libXfixes-6.0.0-4.fc37.x86_64                      109/314 
  Verifying        : libXft-2.3.6-1.fc38.x86_64                         110/314 
  Verifying        : libXi-1.8-3.fc37.x86_64                            111/314 
  Verifying        : libXrender-0.9.11-1.fc38.x86_64                    112/314 
  Verifying        : libXv-1.0.11-17.fc37.x86_64                        113/314 
  Verifying        : libXxf86vm-1.1.5-1.fc38.x86_64                     114/314 
  Verifying        : libaec-1.0.6-3.fc37.x86_64                         115/314 
  Verifying        : libaec-devel-1.0.6-3.fc37.x86_64                   116/314 
  Verifying        : libappstream-glib-0.8.2-1.fc38.x86_64              117/314 
  Verifying        : libasyncns-0.8-23.fc37.x86_64                      118/314 
  Verifying        : libb2-0.98.1-7.fc37.x86_64                         119/314 
  Verifying        : libblkid-devel-2.38.1-3.fc38.x86_64                120/314 
  Verifying        : libdatrie-0.2.13-4.fc37.x86_64                     121/314 
  Verifying        : libdrm-2.4.114-1.fc38.x86_64                       122/314 
  Verifying        : libdrm-devel-2.4.114-1.fc38.x86_64                 123/314 
  Verifying        : libdvdnav-6.1.1-4.fc37.x86_64                      124/314 
  Verifying        : libdvdread-6.1.3-2.fc37.x86_64                     125/314 
  Verifying        : libffi-devel-3.4.4-1.fc38.x86_64                   126/314 
  Verifying        : libgfortran-13.0.1-0.1.fc38.x86_64                 127/314 
  Verifying        : libglvnd-1:1.6.0-1.fc38.x86_64                     128/314 
  Verifying        : libglvnd-core-devel-1:1.6.0-1.fc38.x86_64          129/314 
  Verifying        : libglvnd-devel-1:1.6.0-1.fc38.x86_64               130/314 
  Verifying        : libglvnd-egl-1:1.6.0-1.fc38.x86_64                 131/314 
  Verifying        : libglvnd-gles-1:1.6.0-1.fc38.x86_64                132/314 
  Verifying        : libglvnd-glx-1:1.6.0-1.fc38.x86_64                 133/314 
  Verifying        : libglvnd-opengl-1:1.6.0-1.fc38.x86_64              134/314 
  Verifying        : libgudev-237-3.fc37.x86_64                         135/314 
  Verifying        : libicu-72.1-1.fc38.x86_64                          136/314 
  Verifying        : libicu-devel-72.1-1.fc38.x86_64                    137/314 
  Verifying        : libjpeg-turbo-2.1.4-1.fc38.x86_64                  138/314 
  Verifying        : libmount-devel-2.38.1-3.fc38.x86_64                139/314 
  Verifying        : libmpc-1.3.1-1.fc38.x86_64                         140/314 
  Verifying        : libnice-0.1.21-2.fc38.x86_64                       141/314 
  Verifying        : libogg-2:1.3.5-4.fc37.x86_64                       142/314 
  Verifying        : libpciaccess-0.16-7.fc37.x86_64                    143/314 
  Verifying        : libpciaccess-devel-0.16-7.fc37.x86_64              144/314 
  Verifying        : libpng-2:1.6.37-13.fc37.x86_64                     145/314 
  Verifying        : libpng-devel-2:1.6.37-13.fc37.x86_64               146/314 
  Verifying        : libquadmath-13.0.1-0.1.fc38.x86_64                 147/314 
  Verifying        : libquadmath-devel-13.0.1-0.1.fc38.x86_64           148/314 
  Verifying        : librsvg2-2.55.1-3.fc38.x86_64                      149/314 
  Verifying        : libselinux-devel-3.5-0.rc1.1.fc38.1.x86_64         150/314 
  Verifying        : libsepol-devel-3.5-0.rc1.1.fc38.x86_64             151/314 
  Verifying        : libsndfile-1.1.0-5.fc38.x86_64                     152/314 
  Verifying        : libsoup3-3.2.2-1.fc38.x86_64                       153/314 
  Verifying        : libsrtp-2.3.0-9.fc37.x86_64                        154/314 
  Verifying        : libstdc++-devel-13.0.1-0.1.fc38.x86_64             155/314 
  Verifying        : libstemmer-2.2.0-4.fc38.x86_64                     156/314 
  Verifying        : libthai-0.1.29-3.fc37.x86_64                       157/314 
  Verifying        : libtheora-1:1.1.1-32.fc37.x86_64                   158/314 
  Verifying        : libtool-ltdl-2.4.7-5.fc38.x86_64                   159/314 
  Verifying        : libunwind-1.6.2-5.fc38.x86_64                      160/314 
  Verifying        : libusb1-1.0.26-1.fc38.x86_64                       161/314 
  Verifying        : libuv-1:1.44.2-2.fc37.x86_64                       162/314 
  Verifying        : libva-2.17.0-1.fc38.x86_64                         163/314 
  Verifying        : libvisual-1:0.4.0-37.fc38.x86_64                   164/314 
  Verifying        : libvorbis-1:1.3.7-6.fc37.x86_64                    165/314 
  Verifying        : libwacom-2.4.0-1.fc37.x86_64                       166/314 
  Verifying        : libwacom-data-2.4.0-1.fc37.noarch                  167/314 
  Verifying        : libwayland-client-1.21.0-1.fc37.x86_64             168/314 
  Verifying        : libwayland-cursor-1.21.0-1.fc37.x86_64             169/314 
  Verifying        : libwayland-egl-1.21.0-1.fc37.x86_64                170/314 
  Verifying        : libwayland-server-1.21.0-1.fc37.x86_64             171/314 
  Verifying        : libwebp-1.3.0-1.fc38.x86_64                        172/314 
  Verifying        : libxcrypt-devel-4.4.33-5.fc38.x86_64               173/314 
  Verifying        : libxkbcommon-1.5.0-1.fc38.x86_64                   174/314 
  Verifying        : libxkbcommon-x11-1.5.0-1.fc38.x86_64               175/314 
  Verifying        : libxshmfence-1.3-11.fc37.x86_64                    176/314 
  Verifying        : make-1:4.4-1.fc38.x86_64                           177/314 
  Verifying        : mesa-libGLU-9.0.1-7.fc37.x86_64                    178/314 
  Verifying        : mesa-libGLU-devel-9.0.1-7.fc37.x86_64              179/314 
  Verifying        : mmtf-cpp-devel-1.1.0-1.fc38.x86_64                 180/314 
  Verifying        : mpdecimal-2.5.1-4.fc37.x86_64                      181/314 
  Verifying        : mpg123-libs-1.31.2-1.fc38.x86_64                   182/314 
  Verifying        : msgpack-3.1.0-10.fc37.x86_64                       183/314 
  Verifying        : msgpack-devel-3.1.0-10.fc37.x86_64                 184/314 
  Verifying        : mtdev-1.1.6-4.fc37.x86_64                          185/314 
  Verifying        : ncurses-6.4-2.20230114.fc38.x86_64                 186/314 
  Verifying        : netcdf-4.9.0-4.fc38.x86_64                         187/314 
  Verifying        : netcdf-devel-4.9.0-4.fc38.x86_64                   188/314 
  Verifying        : nspr-4.35.0-3.fc38.x86_64                          189/314 
  Verifying        : nss-3.87.0-1.fc38.x86_64                           190/314 
  Verifying        : nss-softokn-3.87.0-1.fc38.x86_64                   191/314 
  Verifying        : nss-softokn-freebl-3.87.0-1.fc38.x86_64            192/314 
  Verifying        : nss-sysinit-3.87.0-1.fc38.x86_64                   193/314 
  Verifying        : nss-util-3.87.0-1.fc38.x86_64                      194/314 
  Verifying        : openal-soft-1.22.2-6.fc38.x86_64                   195/314 
  Verifying        : openblas-0.3.21-4.fc38.x86_64                      196/314 
  Verifying        : openblas-openmp-0.3.21-4.fc38.x86_64               197/314 
  Verifying        : opus-1.3.1-11.fc37.x86_64                          198/314 
  Verifying        : orc-0.4.33-1.fc38.x86_64                           199/314 
  Verifying        : pango-1.50.12-2.fc38.x86_64                        200/314 
  Verifying        : pcre-8.45-1.fc37.2.x86_64                          201/314 
  Verifying        : pcre2-devel-10.42-1.fc38.x86_64                    202/314 
  Verifying        : pcre2-utf16-10.42-1.fc38.x86_64                    203/314 
  Verifying        : pcre2-utf32-10.42-1.fc38.x86_64                    204/314 
  Verifying        : perl-Carp-1.52-489.fc37.noarch                     205/314 
  Verifying        : perl-Class-Struct-0.66-494.fc38.noarch             206/314 
  Verifying        : perl-DynaLoader-1.52-494.fc38.x86_64               207/314 
  Verifying        : perl-Encode-4:3.19-492.fc38.x86_64                 208/314 
  Verifying        : perl-English-1.11-494.fc38.noarch                  209/314 
  Verifying        : perl-Errno-1.36-494.fc38.x86_64                    210/314 
  Verifying        : perl-Exporter-5.77-489.fc37.noarch                 211/314 
  Verifying        : perl-Fcntl-1.15-494.fc38.x86_64                    212/314 
  Verifying        : perl-File-Basename-2.85-494.fc38.noarch            213/314 
  Verifying        : perl-File-Find-1.40-494.fc38.noarch                214/314 
  Verifying        : perl-File-Path-2.18-489.fc37.noarch                215/314 
  Verifying        : perl-File-Temp-1:0.231.100-489.fc37.noarch         216/314 
  Verifying        : perl-File-stat-1.12-494.fc38.noarch                217/314 
  Verifying        : perl-Getopt-Long-1:2.54-1.fc38.noarch              218/314 
  Verifying        : perl-Getopt-Std-1.13-494.fc38.noarch               219/314 
  Verifying        : perl-HTTP-Tiny-0.082-1.fc37.noarch                 220/314 
  Verifying        : perl-IO-1.50-494.fc38.x86_64                       221/314 
  Verifying        : perl-IPC-Open3-1.22-494.fc38.noarch                222/314 
  Verifying        : perl-MIME-Base64-3.16-489.fc37.x86_64              223/314 
  Verifying        : perl-POSIX-2.03-494.fc38.x86_64                    224/314 
  Verifying        : perl-PathTools-3.84-489.fc37.x86_64                225/314 
  Verifying        : perl-Pod-Escapes-1:1.07-489.fc37.noarch            226/314 
  Verifying        : perl-Pod-Perldoc-3.28.01-490.fc37.noarch           227/314 
  Verifying        : perl-Pod-Simple-1:3.43-490.fc37.noarch             228/314 
  Verifying        : perl-Pod-Usage-4:2.03-3.fc37.noarch                229/314 
  Verifying        : perl-Scalar-List-Utils-5:1.63-489.fc38.x86_64      230/314 
  Verifying        : perl-SelectSaver-1.02-494.fc38.noarch              231/314 
  Verifying        : perl-Socket-4:2.036-1.fc38.x86_64                  232/314 
  Verifying        : perl-Storable-1:3.26-489.fc37.x86_64               233/314 
  Verifying        : perl-Symbol-1.09-494.fc38.noarch                   234/314 
  Verifying        : perl-Term-ANSIColor-5.01-490.fc37.noarch           235/314 
  Verifying        : perl-Term-Cap-1.17-489.fc37.noarch                 236/314 
  Verifying        : perl-Text-ParseWords-3.31-489.fc37.noarch          237/314 
  Verifying        : perl-Text-Tabs+Wrap-2021.0814-489.fc37.noarch      238/314 
  Verifying        : perl-Time-Local-2:1.300-489.fc37.noarch            239/314 
  Verifying        : perl-constant-1.33-490.fc37.noarch                 240/314 
  Verifying        : perl-if-0.61.000-494.fc38.noarch                   241/314 
  Verifying        : perl-interpreter-4:5.36.0-494.fc38.x86_64          242/314 
  Verifying        : perl-libs-4:5.36.0-494.fc38.x86_64                 243/314 
  Verifying        : perl-mro-1.26-494.fc38.x86_64                      244/314 
  Verifying        : perl-overload-1.35-494.fc38.noarch                 245/314 
  Verifying        : perl-overloading-0.02-494.fc38.noarch              246/314 
  Verifying        : perl-parent-1:0.239-1.fc38.noarch                  247/314 
  Verifying        : perl-podlators-1:5.01-1.fc38.noarch                248/314 
  Verifying        : perl-vars-1.05-494.fc38.noarch                     249/314 
  Verifying        : pixman-0.40.0-6.fc37.x86_64                        250/314 
  Verifying        : pulseaudio-libs-16.1-2.fc38.x86_64                 251/314 
  Verifying        : pyproject-rpm-macros-1.5.1-1.fc38.noarch           252/314 
  Verifying        : python-pip-wheel-22.3.1-1.fc38.noarch              253/314 
  Verifying        : python-qt5-rpm-macros-5.15.6-10.fc38.noarch        254/314 
  Verifying        : python-rpm-macros-3.11-7.fc38.noarch               255/314 
  Verifying        : python-setuptools-wheel-65.5.1-1.fc38.noarch       256/314 
  Verifying        : python3-3.11.1-3.fc38.x86_64                       257/314 
  Verifying        : python3-devel-3.11.1-3.fc38.x86_64                 258/314 
  Verifying        : python3-libs-3.11.1-3.fc38.x86_64                  259/314 
  Verifying        : python3-mmtf-1.1.2-18.fc37.noarch                  260/314 
  Verifying        : python3-msgpack-1.0.4-3.fc37.x86_64                261/314 
  Verifying        : python3-packaging-21.3-7.fc38.noarch               262/314 
  Verifying        : python3-pyparsing-3.0.9-2.fc37.noarch              263/314 
  Verifying        : python3-pyqt5-sip-12.11.0-2.fc37.x86_64            264/314 
  Verifying        : python3-qt5-5.15.6-10.fc38.x86_64                  265/314 
  Verifying        : python3-qt5-base-5.15.6-10.fc38.x86_64             266/314 
  Verifying        : python3-qt5-devel-5.15.6-10.fc38.x86_64            267/314 
  Verifying        : python3-rpm-generators-14-1.fc38.noarch            268/314 
  Verifying        : python3-rpm-macros-3.11-7.fc38.noarch              269/314 
  Verifying        : python3-setuptools-65.5.1-1.fc38.noarch            270/314 
  Verifying        : python3-simplejson-3.18.1-1.fc38.x86_64            271/314 
  Verifying        : qt-settings-37.0-1.fc38.noarch                     272/314 
  Verifying        : qt5-qtbase-5.15.8-2.fc38.x86_64                    273/314 
  Verifying        : qt5-qtbase-common-5.15.8-2.fc38.noarch             274/314 
  Verifying        : qt5-qtbase-devel-5.15.8-2.fc38.x86_64              275/314 
  Verifying        : qt5-qtbase-gui-5.15.8-2.fc38.x86_64                276/314 
  Verifying        : qt5-qtconnectivity-5.15.8-1.fc38.x86_64            277/314 
  Verifying        : qt5-qtdeclarative-5.15.8-1.fc38.x86_64             278/314 
  Verifying        : qt5-qtlocation-5.15.8-1.fc38.x86_64                279/314 
  Verifying        : qt5-qtmultimedia-5.15.8-1.fc38.x86_64              280/314 
  Verifying        : qt5-qtsensors-5.15.8-1.fc38.x86_64                 281/314 
  Verifying        : qt5-qtserialport-5.15.8-1.fc38.x86_64              282/314 
  Verifying        : qt5-qtsvg-5.15.8-1.fc38.x86_64                     283/314 
  Verifying        : qt5-qttools-common-5.15.8-1.fc38.noarch            284/314 
  Verifying        : qt5-qttools-libs-designer-5.15.8-1.fc38.x86_64     285/314 
  Verifying        : qt5-qttools-libs-help-5.15.8-1.fc38.x86_64         286/314 
  Verifying        : qt5-qtwebchannel-5.15.8-1.fc38.x86_64              287/314 
  Verifying        : qt5-qtwebsockets-5.15.8-1.fc38.x86_64              288/314 
  Verifying        : qt5-qtx11extras-5.15.8-1.fc38.x86_64               289/314 
  Verifying        : qt5-qtxmlpatterns-5.15.8-1.fc38.x86_64             290/314 
  Verifying        : qt5-rpm-macros-5.15.8-1.fc38.noarch                291/314 
  Verifying        : rhash-1.4.3-1.fc38.x86_64                          292/314 
  Verifying        : serd-0.30.12-2.fc37.x86_64                         293/314 
  Verifying        : shared-mime-info-2.2-2.fc37.x86_64                 294/314 
  Verifying        : snappy-1.1.9-5.fc37.x86_64                         295/314 
  Verifying        : sord-0.16.10-1.fc37.x86_64                         296/314 
  Verifying        : soundtouch-2.3.1-3.fc37.x86_64                     297/314 
  Verifying        : sratom-0.6.10-2.fc37.x86_64                        298/314 
  Verifying        : sysprof-capture-devel-3.46.0-1.fc38.x86_64         299/314 
  Verifying        : vim-filesystem-2:9.0.1221-1.fc38.noarch            300/314 
  Verifying        : vulkan-headers-1.3.231.1-1.fc38.noarch             301/314 
  Verifying        : vulkan-loader-1.3.231.1-2.fc38.x86_64              302/314 
  Verifying        : vulkan-loader-devel-1.3.231.1-2.fc38.x86_64        303/314 
  Verifying        : webrtc-audio-processing-0.3.1-9.fc37.x86_64        304/314 
  Verifying        : xcb-util-0.4.1-1.fc38.x86_64                       305/314 
  Verifying        : xcb-util-image-0.4.1-1.fc38.x86_64                 306/314 
  Verifying        : xcb-util-keysyms-0.4.1-1.fc38.x86_64               307/314 
  Verifying        : xcb-util-renderutil-0.3.10-1.fc38.x86_64           308/314 
  Verifying        : xcb-util-wm-0.4.2-1.fc38.x86_64                    309/314 
  Verifying        : xkeyboard-config-2.36-3.fc38.noarch                310/314 
  Verifying        : xml-common-0.6.3-59.fc37.noarch                    311/314 
  Verifying        : xorg-x11-proto-devel-2022.2-2.fc38.noarch          312/314 
  Verifying        : xz-devel-5.2.9-1.fc38.x86_64                       313/314 
  Verifying        : zlib-devel-1.2.13-2.fc38.x86_64                    314/314 

Installed:
  alsa-lib-1.2.8-2.fc38.x86_64                                                  
  annobin-docs-11.06-2.fc38.noarch                                              
  annobin-plugin-gcc-11.06-2.fc38.x86_64                                        
  avahi-libs-0.8-19.fc38.x86_64                                                 
  blosc-1.21.2-1.fc38.x86_64                                                    
  bluez-libs-5.66-4.fc38.x86_64                                                 
  brotli-1.0.9-11.fc38.x86_64                                                   
  brotli-devel-1.0.9-11.fc38.x86_64                                             
  bzip2-devel-1.0.8-12.fc37.x86_64                                              
  cairo-1.17.6-2.fc37.x86_64                                                    
  cairo-gobject-1.17.6-2.fc37.x86_64                                            
  catch-devel-2.13.8-3.fc37.x86_64                                              
  cdparanoia-libs-10.2-40.fc37.x86_64                                           
  cmake-3.25.2-1.fc38.x86_64                                                    
  cmake-data-3.25.2-1.fc38.noarch                                               
  cmake-filesystem-3.25.2-1.fc38.x86_64                                         
  cmake-rpm-macros-3.25.2-1.fc38.noarch                                         
  cpp-13.0.1-0.1.fc38.x86_64                                                    
  crypto-policies-scripts-20221215-2.gita4c31a3.fc38.noarch                     
  cups-libs-1:2.4.2-5.fc38.x86_64                                               
  dbus-1:1.14.4-1.fc38.x86_64                                                   
  dbus-broker-32-1.fc37.x86_64                                                  
  dbus-common-1:1.14.4-1.fc38.noarch                                            
  dbus-libs-1:1.14.4-1.fc38.x86_64                                              
  desktop-file-utils-0.26-7.fc37.x86_64                                         
  emacs-filesystem-1:28.2-1.fc38.noarch                                         
  expat-2.5.0-1.fc38.x86_64                                                     
  fdk-aac-free-2.0.0-9.fc37.x86_64                                              
  flac-libs-1.4.2-1.fc38.x86_64                                                 
  flexiblas-3.3.0-1.fc38.x86_64                                                 
  flexiblas-netlib-3.3.0-1.fc38.x86_64                                          
  flexiblas-openblas-openmp-3.3.0-1.fc38.x86_64                                 
  fontconfig-2.14.1-2.fc38.x86_64                                               
  fonts-filesystem-1:2.0.5-10.fc38.noarch                                       
  freeglut-3.4.0-1.fc38.x86_64                                                  
  freeglut-devel-3.4.0-1.fc38.x86_64                                            
  freetype-2.12.1-3.fc37.x86_64                                                 
  freetype-devel-2.12.1-3.fc37.x86_64                                           
  fribidi-1.0.12-2.fc37.x86_64                                                  
  gc-8.2.2-1.fc38.x86_64                                                        
  gcc-13.0.1-0.1.fc38.x86_64                                                    
  gcc-c++-13.0.1-0.1.fc38.x86_64                                                
  gcc-gfortran-13.0.1-0.1.fc38.x86_64                                           
  gcc-plugin-annobin-13.0.1-0.1.fc38.x86_64                                     
  gdk-pixbuf2-2.42.10-1.fc38.x86_64                                             
  gl-manpages-1.1-25.20190306.fc37.noarch                                       
  glew-devel-2.2.0-3.fc37.x86_64                                                
  glib2-2.74.1-3.fc38.x86_64                                                    
  glib2-devel-2.74.1-3.fc38.x86_64                                              
  glibc-devel-2.36.9000-23.fc38.x86_64                                          
  glibc-headers-x86-2.36.9000-23.fc38.noarch                                    
  glm-devel-0.9.9.8-5.fc38.noarch                                               
  glx-utils-8.4.0-14.20210504git0f9e7d9.fc37.x86_64                             
  gnutls-3.7.8-11.fc38.x86_64                                                   
  google-noto-fonts-common-20201206^1.git0c78c8329-9.fc38.noarch                
  google-noto-sans-vf-fonts-20201206^1.git0c78c8329-9.fc38.noarch               
  graphene-1.10.6-4.fc37.x86_64                                                 
  graphite2-1.3.14-11.fc38.x86_64                                               
  graphite2-devel-1.3.14-11.fc38.x86_64                                         
  groff-base-1.22.4-10.fc37.x86_64                                              
  gsm-1.0.22-1.fc37.x86_64                                                      
  gssdp-1.6.2-1.fc38.x86_64                                                     
  gstreamer1-1.20.5-1.fc38.x86_64                                               
  gstreamer1-plugins-bad-free-1.20.5-2.fc38.x86_64                              
  gstreamer1-plugins-base-1.20.5-1.fc38.x86_64                                  
  guile22-2.2.7-6.fc37.x86_64                                                   
  gupnp-1.6.3-1.fc38.x86_64                                                     
  gupnp-igd-1.2.0-7.fc38.x86_64                                                 
  harfbuzz-6.0.0-2.fc38.x86_64                                                  
  harfbuzz-devel-6.0.0-2.fc38.x86_64                                            
  harfbuzz-icu-6.0.0-2.fc38.x86_64                                              
  hdf-libs-4.2.15-11.fc37.x86_64                                                
  hdf5-1.12.1-10.fc37.x86_64                                                    
  hdf5-devel-1.12.1-10.fc37.x86_64                                              
  hwdata-0.366-1.fc38.noarch                                                    
  iso-codes-4.12.0-2.fc38.noarch                                                
  json-glib-1.6.6-3.fc37.x86_64                                                 
  jsoncpp-1.9.5-4.fc38.x86_64                                                   
  kernel-headers-6.2.0-0.rc4.git0.1.fc38.x86_64                                 
  lame-libs-3.100-13.fc37.x86_64                                                
  langpacks-core-font-en-3.0-27.fc38.noarch                                     
  lcms2-2.14-1.fc38.x86_64                                                      
  libGLEW-2.2.0-3.fc37.x86_64                                                   
  libICE-1.0.10-9.fc37.x86_64                                                   
  libSM-1.2.3-11.fc37.x86_64                                                    
  libX11-1.8.3-2.fc38.x86_64                                                    
  libX11-common-1.8.3-2.fc38.noarch                                             
  libX11-devel-1.8.3-2.fc38.x86_64                                              
  libX11-xcb-1.8.3-2.fc38.x86_64                                                
  libXau-1.0.11-1.fc38.x86_64                                                   
  libXau-devel-1.0.11-1.fc38.x86_64                                             
  libXext-1.3.5-1.fc38.x86_64                                                   
  libXfixes-6.0.0-4.fc37.x86_64                                                 
  libXft-2.3.6-1.fc38.x86_64                                                    
  libXi-1.8-3.fc37.x86_64                                                       
  libXrender-0.9.11-1.fc38.x86_64                                               
  libXv-1.0.11-17.fc37.x86_64                                                   
  libXxf86vm-1.1.5-1.fc38.x86_64                                                
  libaec-1.0.6-3.fc37.x86_64                                                    
  libaec-devel-1.0.6-3.fc37.x86_64                                              
  libappstream-glib-0.8.2-1.fc38.x86_64                                         
  libasyncns-0.8-23.fc37.x86_64                                                 
  libb2-0.98.1-7.fc37.x86_64                                                    
  libblkid-devel-2.38.1-3.fc38.x86_64                                           
  libcurl-devel-7.87.0-3.fc38.x86_64                                            
  libdatrie-0.2.13-4.fc37.x86_64                                                
  libdrm-2.4.114-1.fc38.x86_64                                                  
  libdrm-devel-2.4.114-1.fc38.x86_64                                            
  libdvdnav-6.1.1-4.fc37.x86_64                                                 
  libdvdread-6.1.3-2.fc37.x86_64                                                
  libevdev-1.13.0-2.fc38.x86_64                                                 
  libffi-devel-3.4.4-1.fc38.x86_64                                              
  libgfortran-13.0.1-0.1.fc38.x86_64                                            
  libglvnd-1:1.6.0-1.fc38.x86_64                                                
  libglvnd-core-devel-1:1.6.0-1.fc38.x86_64                                     
  libglvnd-devel-1:1.6.0-1.fc38.x86_64                                          
  libglvnd-egl-1:1.6.0-1.fc38.x86_64                                            
  libglvnd-gles-1:1.6.0-1.fc38.x86_64                                           
  libglvnd-glx-1:1.6.0-1.fc38.x86_64                                            
  libglvnd-opengl-1:1.6.0-1.fc38.x86_64                                         
  libgudev-237-3.fc37.x86_64                                                    
  libicu-72.1-1.fc38.x86_64                                                     
  libicu-devel-72.1-1.fc38.x86_64                                               
  libinput-1.22.1-2.fc38.x86_64                                                 
  libjpeg-turbo-2.1.4-1.fc38.x86_64                                             
  libmount-devel-2.38.1-3.fc38.x86_64                                           
  libmpc-1.3.1-1.fc38.x86_64                                                    
  libnice-0.1.21-2.fc38.x86_64                                                  
  libogg-2:1.3.5-4.fc37.x86_64                                                  
  libpciaccess-0.16-7.fc37.x86_64                                               
  libpciaccess-devel-0.16-7.fc37.x86_64                                         
  libpng-2:1.6.37-13.fc37.x86_64                                                
  libpng-devel-2:1.6.37-13.fc37.x86_64                                          
  libquadmath-13.0.1-0.1.fc38.x86_64                                            
  libquadmath-devel-13.0.1-0.1.fc38.x86_64                                      
  librsvg2-2.55.1-3.fc38.x86_64                                                 
  libselinux-devel-3.5-0.rc1.1.fc38.1.x86_64                                    
  libsepol-devel-3.5-0.rc1.1.fc38.x86_64                                        
  libsndfile-1.1.0-5.fc38.x86_64                                                
  libsoup3-3.2.2-1.fc38.x86_64                                                  
  libsrtp-2.3.0-9.fc37.x86_64                                                   
  libstdc++-devel-13.0.1-0.1.fc38.x86_64                                        
  libstemmer-2.2.0-4.fc38.x86_64                                                
  libthai-0.1.29-3.fc37.x86_64                                                  
  libtheora-1:1.1.1-32.fc37.x86_64                                              
  libtool-ltdl-2.4.7-5.fc38.x86_64                                              
  libunwind-1.6.2-5.fc38.x86_64                                                 
  libusb1-1.0.26-1.fc38.x86_64                                                  
  libuv-1:1.44.2-2.fc37.x86_64                                                  
  libva-2.17.0-1.fc38.x86_64                                                    
  libvisual-1:0.4.0-37.fc38.x86_64                                              
  libvorbis-1:1.3.7-6.fc37.x86_64                                               
  libwacom-2.4.0-1.fc37.x86_64                                                  
  libwacom-data-2.4.0-1.fc37.noarch                                             
  libwayland-client-1.21.0-1.fc37.x86_64                                        
  libwayland-cursor-1.21.0-1.fc37.x86_64                                        
  libwayland-egl-1.21.0-1.fc37.x86_64                                           
  libwayland-server-1.21.0-1.fc37.x86_64                                        
  libwebp-1.3.0-1.fc38.x86_64                                                   
  libxcb-1.13.1-11.fc38.x86_64                                                  
  libxcb-devel-1.13.1-11.fc38.x86_64                                            
  libxcrypt-devel-4.4.33-5.fc38.x86_64                                          
  libxkbcommon-1.5.0-1.fc38.x86_64                                              
  libxkbcommon-x11-1.5.0-1.fc38.x86_64                                          
  libxml2-devel-2.10.3-3.fc38.x86_64                                            
  libxshmfence-1.3-11.fc37.x86_64                                               
  lilv-libs-0.24.14-4.fc38.x86_64                                               
  make-1:4.4-1.fc38.x86_64                                                      
  mesa-filesystem-22.3.3-2.fc38.x86_64                                          
  mesa-libEGL-22.3.3-2.fc38.x86_64                                              
  mesa-libEGL-devel-22.3.3-2.fc38.x86_64                                        
  mesa-libGL-22.3.3-2.fc38.x86_64                                               
  mesa-libGL-devel-22.3.3-2.fc38.x86_64                                         
  mesa-libGLU-9.0.1-7.fc37.x86_64                                               
  mesa-libGLU-devel-9.0.1-7.fc37.x86_64                                         
  mesa-libgbm-22.3.3-2.fc38.x86_64                                              
  mesa-libglapi-22.3.3-2.fc38.x86_64                                            
  mmtf-cpp-devel-1.1.0-1.fc38.x86_64                                            
  mpdecimal-2.5.1-4.fc37.x86_64                                                 
  mpg123-libs-1.31.2-1.fc38.x86_64                                              
  msgpack-3.1.0-10.fc37.x86_64                                                  
  msgpack-devel-3.1.0-10.fc37.x86_64                                            
  mtdev-1.1.6-4.fc37.x86_64                                                     
  ncurses-6.4-2.20230114.fc38.x86_64                                            
  netcdf-4.9.0-4.fc38.x86_64                                                    
  netcdf-devel-4.9.0-4.fc38.x86_64                                              
  nspr-4.35.0-3.fc38.x86_64                                                     
  nss-3.87.0-1.fc38.x86_64                                                      
  nss-softokn-3.87.0-1.fc38.x86_64                                              
  nss-softokn-freebl-3.87.0-1.fc38.x86_64                                       
  nss-sysinit-3.87.0-1.fc38.x86_64                                              
  nss-util-3.87.0-1.fc38.x86_64                                                 
  openal-soft-1.22.2-6.fc38.x86_64                                              
  openblas-0.3.21-4.fc38.x86_64                                                 
  openblas-openmp-0.3.21-4.fc38.x86_64                                          
  opus-1.3.1-11.fc37.x86_64                                                     
  orc-0.4.33-1.fc38.x86_64                                                      
  pango-1.50.12-2.fc38.x86_64                                                   
  pcre-8.45-1.fc37.2.x86_64                                                     
  pcre2-devel-10.42-1.fc38.x86_64                                               
  pcre2-utf16-10.42-1.fc38.x86_64                                               
  pcre2-utf32-10.42-1.fc38.x86_64                                               
  perl-Carp-1.52-489.fc37.noarch                                                
  perl-Class-Struct-0.66-494.fc38.noarch                                        
  perl-DynaLoader-1.52-494.fc38.x86_64                                          
  perl-Encode-4:3.19-492.fc38.x86_64                                            
  perl-English-1.11-494.fc38.noarch                                             
  perl-Errno-1.36-494.fc38.x86_64                                               
  perl-Exporter-5.77-489.fc37.noarch                                            
  perl-Fcntl-1.15-494.fc38.x86_64                                               
  perl-File-Basename-2.85-494.fc38.noarch                                       
  perl-File-Find-1.40-494.fc38.noarch                                           
  perl-File-Path-2.18-489.fc37.noarch                                           
  perl-File-Temp-1:0.231.100-489.fc37.noarch                                    
  perl-File-stat-1.12-494.fc38.noarch                                           
  perl-Getopt-Long-1:2.54-1.fc38.noarch                                         
  perl-Getopt-Std-1.13-494.fc38.noarch                                          
  perl-HTTP-Tiny-0.082-1.fc37.noarch                                            
  perl-IO-1.50-494.fc38.x86_64                                                  
  perl-IPC-Open3-1.22-494.fc38.noarch                                           
  perl-MIME-Base64-3.16-489.fc37.x86_64                                         
  perl-POSIX-2.03-494.fc38.x86_64                                               
  perl-PathTools-3.84-489.fc37.x86_64                                           
  perl-Pod-Escapes-1:1.07-489.fc37.noarch                                       
  perl-Pod-Perldoc-3.28.01-490.fc37.noarch                                      
  perl-Pod-Simple-1:3.43-490.fc37.noarch                                        
  perl-Pod-Usage-4:2.03-3.fc37.noarch                                           
  perl-Scalar-List-Utils-5:1.63-489.fc38.x86_64                                 
  perl-SelectSaver-1.02-494.fc38.noarch                                         
  perl-Socket-4:2.036-1.fc38.x86_64                                             
  perl-Storable-1:3.26-489.fc37.x86_64                                          
  perl-Symbol-1.09-494.fc38.noarch                                              
  perl-Term-ANSIColor-5.01-490.fc37.noarch                                      
  perl-Term-Cap-1.17-489.fc37.noarch                                            
  perl-Text-ParseWords-3.31-489.fc37.noarch                                     
  perl-Text-Tabs+Wrap-2021.0814-489.fc37.noarch                                 
  perl-Time-Local-2:1.300-489.fc37.noarch                                       
  perl-constant-1.33-490.fc37.noarch                                            
  perl-if-0.61.000-494.fc38.noarch                                              
  perl-interpreter-4:5.36.0-494.fc38.x86_64                                     
  perl-libs-4:5.36.0-494.fc38.x86_64                                            
  perl-mro-1.26-494.fc38.x86_64                                                 
  perl-overload-1.35-494.fc38.noarch                                            
  perl-overloading-0.02-494.fc38.noarch                                         
  perl-parent-1:0.239-1.fc38.noarch                                             
  perl-podlators-1:5.01-1.fc38.noarch                                           
  perl-vars-1.05-494.fc38.noarch                                                
  pixman-0.40.0-6.fc37.x86_64                                                   
  pulseaudio-libs-16.1-2.fc38.x86_64                                            
  pyproject-rpm-macros-1.5.1-1.fc38.noarch                                      
  python-pip-wheel-22.3.1-1.fc38.noarch                                         
  python-qt5-rpm-macros-5.15.6-10.fc38.noarch                                   
  python-rpm-macros-3.11-7.fc38.noarch                                          
  python-setuptools-wheel-65.5.1-1.fc38.noarch                                  
  python3-3.11.1-3.fc38.x86_64                                                  
  python3-dbus-1.3.2-2.fc38.x86_64                                              
  python3-devel-3.11.1-3.fc38.x86_64                                            
  python3-libs-3.11.1-3.fc38.x86_64                                             
  python3-mmtf-1.1.2-18.fc37.noarch                                             
  python3-msgpack-1.0.4-3.fc37.x86_64                                           
  python3-numpy-1:1.23.5-2.fc38.x86_64                                          
  python3-packaging-21.3-7.fc38.noarch                                          
  python3-pyparsing-3.0.9-2.fc37.noarch                                         
  python3-pyqt5-sip-12.11.0-2.fc37.x86_64                                       
  python3-qt5-5.15.6-10.fc38.x86_64                                             
  python3-qt5-base-5.15.6-10.fc38.x86_64                                        
  python3-qt5-devel-5.15.6-10.fc38.x86_64                                       
  python3-rpm-generators-14-1.fc38.noarch                                       
  python3-rpm-macros-3.11-7.fc38.noarch                                         
  python3-setuptools-65.5.1-1.fc38.noarch                                       
  python3-simplejson-3.18.1-1.fc38.x86_64                                       
  qt-settings-37.0-1.fc38.noarch                                                
  qt5-qtbase-5.15.8-2.fc38.x86_64                                               
  qt5-qtbase-common-5.15.8-2.fc38.noarch                                        
  qt5-qtbase-devel-5.15.8-2.fc38.x86_64                                         
  qt5-qtbase-gui-5.15.8-2.fc38.x86_64                                           
  qt5-qtconnectivity-5.15.8-1.fc38.x86_64                                       
  qt5-qtdeclarative-5.15.8-1.fc38.x86_64                                        
  qt5-qtlocation-5.15.8-1.fc38.x86_64                                           
  qt5-qtmultimedia-5.15.8-1.fc38.x86_64                                         
  qt5-qtsensors-5.15.8-1.fc38.x86_64                                            
  qt5-qtserialport-5.15.8-1.fc38.x86_64                                         
  qt5-qtsvg-5.15.8-1.fc38.x86_64                                                
  qt5-qttools-common-5.15.8-1.fc38.noarch                                       
  qt5-qttools-libs-designer-5.15.8-1.fc38.x86_64                                
  qt5-qttools-libs-help-5.15.8-1.fc38.x86_64                                    
  qt5-qtwebchannel-5.15.8-1.fc38.x86_64                                         
  qt5-qtwebsockets-5.15.8-1.fc38.x86_64                                         
  qt5-qtx11extras-5.15.8-1.fc38.x86_64                                          
  qt5-qtxmlpatterns-5.15.8-1.fc38.x86_64                                        
  qt5-rpm-macros-5.15.8-1.fc38.noarch                                           
  rhash-1.4.3-1.fc38.x86_64                                                     
  serd-0.30.12-2.fc37.x86_64                                                    
  shared-mime-info-2.2-2.fc37.x86_64                                            
  snappy-1.1.9-5.fc37.x86_64                                                    
  sord-0.16.10-1.fc37.x86_64                                                    
  soundtouch-2.3.1-3.fc37.x86_64                                                
  sratom-0.6.10-2.fc37.x86_64                                                   
  sysprof-capture-devel-3.46.0-1.fc38.x86_64                                    
  vim-filesystem-2:9.0.1221-1.fc38.noarch                                       
  vulkan-headers-1.3.231.1-1.fc38.noarch                                        
  vulkan-loader-1.3.231.1-2.fc38.x86_64                                         
  vulkan-loader-devel-1.3.231.1-2.fc38.x86_64                                   
  webrtc-audio-processing-0.3.1-9.fc37.x86_64                                   
  xcb-util-0.4.1-1.fc38.x86_64                                                  
  xcb-util-image-0.4.1-1.fc38.x86_64                                            
  xcb-util-keysyms-0.4.1-1.fc38.x86_64                                          
  xcb-util-renderutil-0.3.10-1.fc38.x86_64                                      
  xcb-util-wm-0.4.2-1.fc38.x86_64                                               
  xkeyboard-config-2.36-3.fc38.noarch                                           
  xml-common-0.6.3-59.fc37.noarch                                               
  xorg-x11-proto-devel-2022.2-2.fc38.noarch                                     
  xz-devel-5.2.9-1.fc38.x86_64                                                  
  zlib-devel-1.2.13-2.fc38.x86_64                                               

Complete!
Finish: build setup for pymol-2.5.0-6.fc38.src.rpm
Start: rpmbuild pymol-2.5.0-6.fc38.src.rpm
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1674172800
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.sR1YZg
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf pymol-open-source-2.5.0
+ /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/pymol-open-source-2.5.0.tar.gz
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd pymol-open-source-2.5.0
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/pymol-setup.py.patch
+ /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f
+ /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/pymol-wmclass-main.patch
+ /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f
+ /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/pymol-wmclass-pmgapp.patch
+ /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f
+ /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/pymol-mmtf.patch
+ /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f
+ /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/pymol-2.5.0-bug186.patch
+ /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f
+ ln -sr modules/web modules/pymol_web
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.YPCA0m
+ umask 022
+ cd /builddir/build/BUILD
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer'
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer'
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules'
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes'
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd pymol-open-source-2.5.0
+ export 'CXXFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer'
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer'
++ /usr/bin/getconf _NPROCESSORS_ONLN
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer'
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes'
+ /usr/bin/python3 setup.py build '--executable=/usr/bin/python3 -sP' --use-msgpackc=c++11 --use-openmp=yes --jobs 2
running build
running build_py
creating build/lib.linux-x86_64-cpython-311
creating build/lib.linux-x86_64-cpython-311/pymol2
copying modules/pymol2/cmd2.py -> build/lib.linux-x86_64-cpython-311/pymol2
copying modules/pymol2/__init__.py -> build/lib.linux-x86_64-cpython-311/pymol2
creating build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/xwin.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/xray.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/wizarding.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/viewing.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/vfont.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/util.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/shortcut_manager.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/shortcut_dict.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/shortcut.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/setting.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/seqalign.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/selector.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/selecting.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/save_shortcut.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/rpc.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/querying.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/pymolhttpd.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/preset.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/povray.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/parsing.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/parser.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/mpeg_encode.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/moving.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/movie.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/morphing.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/monitoring.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/menu.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/locking.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/lazyio.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/keywords.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/keyboard.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/invocation.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/internal.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/importing.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/helping.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/headering.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/gui.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/fitting.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/feedingback.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/externing.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/exporting.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/experimenting.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/editor.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/editing.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/diagnosing.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/creating.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/controlling.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/constants_palette.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/constants.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/computing.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/completing.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/commanding.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/colorramping.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/colorprinting.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/cmd.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/checking.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/cgo.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/callback.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/api.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/_gui.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/__main__.py -> build/lib.linux-x86_64-cpython-311/pymol
copying modules/pymol/__init__.py -> build/lib.linux-x86_64-cpython-311/pymol
creating build/lib.linux-x86_64-cpython-311/pymol/wizard
copying modules/pymol/wizard/toggle.py -> build/lib.linux-x86_64-cpython-311/pymol/wizard
copying modules/pymol/wizard/stereodemo.py -> build/lib.linux-x86_64-cpython-311/pymol/wizard
copying modules/pymol/wizard/security.py -> build/lib.linux-x86_64-cpython-311/pymol/wizard
copying modules/pymol/wizard/sculpting.py -> build/lib.linux-x86_64-cpython-311/pymol/wizard
copying modules/pymol/wizard/renaming.py -> build/lib.linux-x86_64-cpython-311/pymol/wizard
copying modules/pymol/wizard/pseudoatom.py -> build/lib.linux-x86_64-cpython-311/pymol/wizard
copying modules/pymol/wizard/pair_fit.py -> build/lib.linux-x86_64-cpython-311/pymol/wizard
copying modules/pymol/wizard/openvr.py -> build/lib.linux-x86_64-cpython-311/pymol/wizard
copying modules/pymol/wizard/nucmutagenesis.py -> build/lib.linux-x86_64-cpython-311/pymol/wizard
copying modules/pymol/wizard/mutagenesis.py -> build/lib.linux-x86_64-cpython-311/pymol/wizard
copying modules/pymol/wizard/message.py -> build/lib.linux-x86_64-cpython-311/pymol/wizard
copying modules/pymol/wizard/measurement.py -> build/lib.linux-x86_64-cpython-311/pymol/wizard
copying modules/pymol/wizard/label.py -> build/lib.linux-x86_64-cpython-311/pymol/wizard
copying modules/pymol/wizard/filter.py -> build/lib.linux-x86_64-cpython-311/pymol/wizard
copying modules/pymol/wizard/dragging.py -> build/lib.linux-x86_64-cpython-311/pymol/wizard
copying modules/pymol/wizard/distance.py -> build/lib.linux-x86_64-cpython-311/pymol/wizard
copying modules/pymol/wizard/density.py -> build/lib.linux-x86_64-cpython-311/pymol/wizard
copying modules/pymol/wizard/demo.py -> build/lib.linux-x86_64-cpython-311/pymol/wizard
copying modules/pymol/wizard/command.py -> build/lib.linux-x86_64-cpython-311/pymol/wizard
copying modules/pymol/wizard/cleanup.py -> build/lib.linux-x86_64-cpython-311/pymol/wizard
copying modules/pymol/wizard/charge.py -> build/lib.linux-x86_64-cpython-311/pymol/wizard
copying modules/pymol/wizard/box.py -> build/lib.linux-x86_64-cpython-311/pymol/wizard
copying modules/pymol/wizard/benchmark.py -> build/lib.linux-x86_64-cpython-311/pymol/wizard
copying modules/pymol/wizard/appearance.py -> build/lib.linux-x86_64-cpython-311/pymol/wizard
copying modules/pymol/wizard/annotation.py -> build/lib.linux-x86_64-cpython-311/pymol/wizard
copying modules/pymol/wizard/__init__.py -> build/lib.linux-x86_64-cpython-311/pymol/wizard
creating build/lib.linux-x86_64-cpython-311/pymol/stereochemistry
copying modules/pymol/stereochemistry/__init__.py -> build/lib.linux-x86_64-cpython-311/pymol/stereochemistry
creating build/lib.linux-x86_64-cpython-311/pymol/plugins
copying modules/pymol/plugins/repository.py -> build/lib.linux-x86_64-cpython-311/pymol/plugins
copying modules/pymol/plugins/managergui_qt.py -> build/lib.linux-x86_64-cpython-311/pymol/plugins
copying modules/pymol/plugins/managergui.py -> build/lib.linux-x86_64-cpython-311/pymol/plugins
copying modules/pymol/plugins/legacysupport.py -> build/lib.linux-x86_64-cpython-311/pymol/plugins
copying modules/pymol/plugins/installation.py -> build/lib.linux-x86_64-cpython-311/pymol/plugins
copying modules/pymol/plugins/__init__.py -> build/lib.linux-x86_64-cpython-311/pymol/plugins
creating build/lib.linux-x86_64-cpython-311/pymol/Qt
copying modules/pymol/Qt/utils.py -> build/lib.linux-x86_64-cpython-311/pymol/Qt
copying modules/pymol/Qt/__init__.py -> build/lib.linux-x86_64-cpython-311/pymol/Qt
creating build/lib.linux-x86_64-cpython-311/pmg_tk
copying modules/pmg_tk/PMGApp.py -> build/lib.linux-x86_64-cpython-311/pmg_tk
copying modules/pmg_tk/volume.py -> build/lib.linux-x86_64-cpython-311/pmg_tk
copying modules/pmg_tk/__init__.py -> build/lib.linux-x86_64-cpython-311/pmg_tk
copying modules/pmg_tk/TextEditor.py -> build/lib.linux-x86_64-cpython-311/pmg_tk
copying modules/pmg_tk/Setting.py -> build/lib.linux-x86_64-cpython-311/pmg_tk
copying modules/pmg_tk/SetEditor.py -> build/lib.linux-x86_64-cpython-311/pmg_tk
copying modules/pmg_tk/PyMOLMapLoad.py -> build/lib.linux-x86_64-cpython-311/pmg_tk
copying modules/pmg_tk/Demo.py -> build/lib.linux-x86_64-cpython-311/pmg_tk
copying modules/pmg_tk/ColorEditor.py -> build/lib.linux-x86_64-cpython-311/pmg_tk
creating build/lib.linux-x86_64-cpython-311/pmg_tk/startup
copying modules/pmg_tk/startup/__init__.py -> build/lib.linux-x86_64-cpython-311/pmg_tk/startup
creating build/lib.linux-x86_64-cpython-311/pmg_tk/skins
copying modules/pmg_tk/skins/__init__.py -> build/lib.linux-x86_64-cpython-311/pmg_tk/skins
creating build/lib.linux-x86_64-cpython-311/pmg_tk/skins/normal
copying modules/pmg_tk/skins/normal/builder.py -> build/lib.linux-x86_64-cpython-311/pmg_tk/skins/normal
copying modules/pmg_tk/skins/normal/__init__.py -> build/lib.linux-x86_64-cpython-311/pmg_tk/skins/normal
copying modules/pmg_tk/skins/normal/ModalWindow.py -> build/lib.linux-x86_64-cpython-311/pmg_tk/skins/normal
creating build/lib.linux-x86_64-cpython-311/pmg_tk/skins/demo
copying modules/pmg_tk/skins/demo/__init__.py -> build/lib.linux-x86_64-cpython-311/pmg_tk/skins/demo
creating build/lib.linux-x86_64-cpython-311/pmg_qt
copying modules/pmg_qt/volume.py -> build/lib.linux-x86_64-cpython-311/pmg_qt
copying modules/pmg_qt/shortcut_menu_gui.py -> build/lib.linux-x86_64-cpython-311/pmg_qt
copying modules/pmg_qt/pymol_qt_gui.py -> build/lib.linux-x86_64-cpython-311/pmg_qt
copying modules/pmg_qt/pymol_gl_widget.py -> build/lib.linux-x86_64-cpython-311/pmg_qt
copying modules/pmg_qt/properties_dialog.py -> build/lib.linux-x86_64-cpython-311/pmg_qt
copying modules/pmg_qt/mimic_tk.py -> build/lib.linux-x86_64-cpython-311/pmg_qt
copying modules/pmg_qt/mimic_pmg_tk.py -> build/lib.linux-x86_64-cpython-311/pmg_qt
copying modules/pmg_qt/keymapping.py -> build/lib.linux-x86_64-cpython-311/pmg_qt
copying modules/pmg_qt/file_dialogs.py -> build/lib.linux-x86_64-cpython-311/pmg_qt
copying modules/pmg_qt/builder.py -> build/lib.linux-x86_64-cpython-311/pmg_qt
copying modules/pmg_qt/advanced_settings_gui.py -> build/lib.linux-x86_64-cpython-311/pmg_qt
copying modules/pmg_qt/__init__.py -> build/lib.linux-x86_64-cpython-311/pmg_qt
copying modules/pmg_qt/TextEditor.py -> build/lib.linux-x86_64-cpython-311/pmg_qt
creating build/lib.linux-x86_64-cpython-311/pmg_qt/syntax
copying modules/pmg_qt/syntax/python.py -> build/lib.linux-x86_64-cpython-311/pmg_qt/syntax
copying modules/pmg_qt/syntax/pmlparser.py -> build/lib.linux-x86_64-cpython-311/pmg_qt/syntax
copying modules/pmg_qt/syntax/pml.py -> build/lib.linux-x86_64-cpython-311/pmg_qt/syntax
copying modules/pmg_qt/syntax/__init__.py -> build/lib.linux-x86_64-cpython-311/pmg_qt/syntax
creating build/lib.linux-x86_64-cpython-311/pmg_qt/forms
copying modules/pmg_qt/forms/__init__.py -> build/lib.linux-x86_64-cpython-311/pmg_qt/forms
creating build/lib.linux-x86_64-cpython-311/chempy
copying modules/chempy/xyz.py -> build/lib.linux-x86_64-cpython-311/chempy
copying modules/chempy/water_residues.py -> build/lib.linux-x86_64-cpython-311/chempy
copying modules/chempy/water_amber.py -> build/lib.linux-x86_64-cpython-311/chempy
copying modules/chempy/solvate.py -> build/lib.linux-x86_64-cpython-311/chempy
copying modules/chempy/sdf.py -> build/lib.linux-x86_64-cpython-311/chempy
copying modules/chempy/protein_residues.py -> build/lib.linux-x86_64-cpython-311/chempy
copying modules/chempy/protein_mmff.py -> build/lib.linux-x86_64-cpython-311/chempy
copying modules/chempy/protein_amber99.py -> build/lib.linux-x86_64-cpython-311/chempy
copying modules/chempy/protein_amber.py -> build/lib.linux-x86_64-cpython-311/chempy
copying modules/chempy/protein.py -> build/lib.linux-x86_64-cpython-311/chempy
copying modules/chempy/place.py -> build/lib.linux-x86_64-cpython-311/chempy
copying modules/chempy/pkl.py -> build/lib.linux-x86_64-cpython-311/chempy
copying modules/chempy/pdb.py -> build/lib.linux-x86_64-cpython-311/chempy
copying modules/chempy/neighbor.py -> build/lib.linux-x86_64-cpython-311/chempy
copying modules/chempy/mol2.py -> build/lib.linux-x86_64-cpython-311/chempy
copying modules/chempy/mol.py -> build/lib.linux-x86_64-cpython-311/chempy
copying modules/chempy/models.py -> build/lib.linux-x86_64-cpython-311/chempy
copying modules/chempy/mmd.py -> build/lib.linux-x86_64-cpython-311/chempy
copying modules/chempy/mass.py -> build/lib.linux-x86_64-cpython-311/chempy
copying modules/chempy/map.py -> build/lib.linux-x86_64-cpython-311/chempy
copying modules/chempy/mae.py -> build/lib.linux-x86_64-cpython-311/chempy
copying modules/chempy/lst.py -> build/lib.linux-x86_64-cpython-311/chempy
copying modules/chempy/io.py -> build/lib.linux-x86_64-cpython-311/chempy
copying modules/chempy/hetatm.py -> build/lib.linux-x86_64-cpython-311/chempy
copying modules/chempy/gms.py -> build/lib.linux-x86_64-cpython-311/chempy
copying modules/chempy/gamess1.py -> build/lib.linux-x86_64-cpython-311/chempy
copying modules/chempy/dictdb.py -> build/lib.linux-x86_64-cpython-311/chempy
copying modules/chempy/cpv.py -> build/lib.linux-x86_64-cpython-311/chempy
copying modules/chempy/cif.py -> build/lib.linux-x86_64-cpython-311/chempy
copying modules/chempy/charge.py -> build/lib.linux-x86_64-cpython-311/chempy
copying modules/chempy/cc1.py -> build/lib.linux-x86_64-cpython-311/chempy
copying modules/chempy/brick.py -> build/lib.linux-x86_64-cpython-311/chempy
copying modules/chempy/bonds.py -> build/lib.linux-x86_64-cpython-311/chempy
copying modules/chempy/bond_mmff.py -> build/lib.linux-x86_64-cpython-311/chempy
copying modules/chempy/bond_amber.py -> build/lib.linux-x86_64-cpython-311/chempy
copying modules/chempy/arc.py -> build/lib.linux-x86_64-cpython-311/chempy
copying modules/chempy/__init__.py -> build/lib.linux-x86_64-cpython-311/chempy
creating build/lib.linux-x86_64-cpython-311/chempy/tinker
copying modules/chempy/tinker/state.py -> build/lib.linux-x86_64-cpython-311/chempy/tinker
copying modules/chempy/tinker/realtime.py -> build/lib.linux-x86_64-cpython-311/chempy/tinker
copying modules/chempy/tinker/keyword.py -> build/lib.linux-x86_64-cpython-311/chempy/tinker
copying modules/chempy/tinker/amber.py -> build/lib.linux-x86_64-cpython-311/chempy/tinker
copying modules/chempy/tinker/__init__.py -> build/lib.linux-x86_64-cpython-311/chempy/tinker
creating build/lib.linux-x86_64-cpython-311/chempy/mmtf
copying modules/chempy/mmtf/io.py -> build/lib.linux-x86_64-cpython-311/chempy/mmtf
copying modules/chempy/mmtf/__init__.py -> build/lib.linux-x86_64-cpython-311/chempy/mmtf
creating build/lib.linux-x86_64-cpython-311/chempy/fragments
copying modules/chempy/fragments/__init__.py -> build/lib.linux-x86_64-cpython-311/chempy/fragments
creating build/lib.linux-x86_64-cpython-311/chempy/fast
copying modules/chempy/fast/__init__.py -> build/lib.linux-x86_64-cpython-311/chempy/fast
creating build/lib.linux-x86_64-cpython-311/chempy/champ
copying modules/chempy/champ/formal_charges.py -> build/lib.linux-x86_64-cpython-311/chempy/champ
copying modules/chempy/champ/assign.py -> build/lib.linux-x86_64-cpython-311/chempy/champ
copying modules/chempy/champ/amber99.py -> build/lib.linux-x86_64-cpython-311/chempy/champ
copying modules/chempy/champ/__init__.py -> build/lib.linux-x86_64-cpython-311/chempy/champ
creating build/lib.linux-x86_64-cpython-311/chempy/bmin
copying modules/chempy/bmin/util.py -> build/lib.linux-x86_64-cpython-311/chempy/bmin
copying modules/chempy/bmin/state.py -> build/lib.linux-x86_64-cpython-311/chempy/bmin
copying modules/chempy/bmin/realtime.py -> build/lib.linux-x86_64-cpython-311/chempy/bmin
copying modules/chempy/bmin/commands.py -> build/lib.linux-x86_64-cpython-311/chempy/bmin
copying modules/chempy/bmin/__init__.py -> build/lib.linux-x86_64-cpython-311/chempy/bmin
copying modules/pmg_qt/forms/shortcut_menu.ui -> build/lib.linux-x86_64-cpython-311/pmg_qt/forms
copying modules/pmg_qt/forms/save_object.ui -> build/lib.linux-x86_64-cpython-311/pmg_qt/forms
copying modules/pmg_qt/forms/save_molecule.ui -> build/lib.linux-x86_64-cpython-311/pmg_qt/forms
copying modules/pmg_qt/forms/render.ui -> build/lib.linux-x86_64-cpython-311/pmg_qt/forms
copying modules/pmg_qt/forms/props.ui -> build/lib.linux-x86_64-cpython-311/pmg_qt/forms
copying modules/pmg_qt/forms/png.ui -> build/lib.linux-x86_64-cpython-311/pmg_qt/forms
copying modules/pmg_qt/forms/pluginmanager.ui -> build/lib.linux-x86_64-cpython-311/pmg_qt/forms
copying modules/pmg_qt/forms/pluginitem.ui -> build/lib.linux-x86_64-cpython-311/pmg_qt/forms
copying modules/pmg_qt/forms/movieexport.ui -> build/lib.linux-x86_64-cpython-311/pmg_qt/forms
copying modules/pmg_qt/forms/load_traj.ui -> build/lib.linux-x86_64-cpython-311/pmg_qt/forms
copying modules/pmg_qt/forms/load_mtz.ui -> build/lib.linux-x86_64-cpython-311/pmg_qt/forms
copying modules/pmg_qt/forms/load_map.ui -> build/lib.linux-x86_64-cpython-311/pmg_qt/forms
copying modules/pmg_qt/forms/load_mae.ui -> build/lib.linux-x86_64-cpython-311/pmg_qt/forms
copying modules/pmg_qt/forms/load_aln.ui -> build/lib.linux-x86_64-cpython-311/pmg_qt/forms
copying modules/pmg_qt/forms/help_shortcut.ui -> build/lib.linux-x86_64-cpython-311/pmg_qt/forms
copying modules/pmg_qt/forms/fetch.ui -> build/lib.linux-x86_64-cpython-311/pmg_qt/forms
copying modules/pmg_qt/forms/create_shortcut.ui -> build/lib.linux-x86_64-cpython-311/pmg_qt/forms
copying modules/pmg_qt/forms/colors.ui -> build/lib.linux-x86_64-cpython-311/pmg_qt/forms
copying modules/pmg_qt/forms/change_confirm.ui -> build/lib.linux-x86_64-cpython-311/pmg_qt/forms
copying modules/pmg_qt/forms/askpartial.ui -> build/lib.linux-x86_64-cpython-311/pmg_qt/forms
running build_ext
building 'pymol._cmd' extension
creating build/temp.linux-x86_64-cpython-311
creating build/temp.linux-x86_64-cpython-311/build
creating build/temp.linux-x86_64-cpython-311/build/generated
creating build/temp.linux-x86_64-cpython-311/contrib
creating build/temp.linux-x86_64-cpython-311/contrib/mmtf-c
creating build/temp.linux-x86_64-cpython-311/contrib/uiuc
creating build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins
creating build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin
creating build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src
creating build/temp.linux-x86_64-cpython-311/layer0
creating build/temp.linux-x86_64-cpython-311/layer1
creating build/temp.linux-x86_64-cpython-311/layer2
creating build/temp.linux-x86_64-cpython-311/layer3
creating build/temp.linux-x86_64-cpython-311/layer4
creating build/temp.linux-x86_64-cpython-311/layer5
creating build/temp.linux-x86_64-cpython-311/ov
creating build/temp.linux-x86_64-cpython-311/ov/src
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD build/generated/ShaderText.cpp -o build/temp.linux-x86_64-cpython-311/build/generated/ShaderText.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/jsplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/mmtf-c/mmtf_parser.cpp -o build/temp.linux-x86_64-cpython-311/contrib/mmtf-c/mmtf_parser.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In file included from contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c:79:
contrib/uiuc/plugins/molfile_plugin/src/fastio.h: In function ‘fio_readv’:
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:519:14: warning: comparison of integer expressions of different signedness: ‘fio_size_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  519 |       if (rc != iov[i].iov_len)
      |              ^~
In file included from contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c:89:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h: At top level:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: ‘swap8_unaligned’ defined but not used [-Wunused-function]
   65 | static void swap8_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: ‘swap4_unaligned’ defined but not used [-Wunused-function]
   46 | static void swap4_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘swap2_unaligned’ defined but not used [-Wunused-function]
   32 | static void swap2_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:459:19: warning: ‘fio_readv’ defined but not used [-Wunused-function]
  459 | static fio_size_t fio_readv(fio_fd fd, const fio_iovec * iov, int iovcnt) {
      |                   ^~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/mmtf-c/mmtf_parser.cpp: In function ‘bool MMTF_unpack_from_file(const char*, MMTF_container*)’:
contrib/mmtf-c/mmtf_parser.cpp:1075:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1075 |     fread(buffer, fileLen, 1, file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp: In function ‘int {anonymous}::write_structure(void*, int, const molfile_atom_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp:1904:9: warning: unused variable ‘last_ctnumber’ [-Wunused-variable]
 1904 |     int last_ctnumber = -1;
      |         ^~~~~~~~~~~~~
contrib/mmtf-c/mmtf_parser.cpp: In function ‘MMTF_parser_fetch_typed_array(msgpack::v2::object const*, unsigned long*, int)’:
contrib/mmtf-c/mmtf_parser.cpp:869:5: warning: ‘typecheck’ may be used uninitialized [-Wmaybe-uninitialized]
  869 |     if (typecode != typecheck) {
      |     ^~
contrib/mmtf-c/mmtf_parser.cpp:864:9: note: ‘typecheck’ was declared here
  864 |     int typecheck;
      |         ^~~~~~~~~
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c: In function ‘PlugIOManagerInitAll’:
contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c:271:1: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  271 | if(ok) ok = ok && (molfile_xyzplugin_init() == VMDPLUGIN_SUCCESS);
      | ^~
contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c:273:8: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  273 |        if(ok) {
      |        ^~
contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c: In function ‘PlugIOManagerFreeAll’:
contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c:411:1: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  411 | if(ok) ok = ok && (molfile_xyzplugin_fini() == VMDPLUGIN_SUCCESS);
      | ^~
contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c:413:8: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  413 |        return ok;
      |        ^~~~~~
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function ‘abinit_readline’:
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:279:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  279 |     for (i = 0; i < strlen(line); ++i) {
      |                   ^
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function ‘DEN_read_volumetric_data’:
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:970:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  970 |     fread(recordmarker, 1, data->hdr->bintype.recordmarker, data->file);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:971:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  971 |     fread(recordmarker, 1, data->hdr->bintype.recordmarker, data->file);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function ‘POT_read_volumetric_data’:
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:1113:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1113 |     fread(recordmarker, 1, data->hdr->bintype.recordmarker, data->file);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:1114:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1114 |     fread(recordmarker, 1, data->hdr->bintype.recordmarker, data->file);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function ‘abinit_header’:
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:1511:3: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1511 |   fread(skip, 1, 8, fp);
      |   ^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function ‘GEO_read_next_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:619:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  619 |     fscanf(data->file, "%*s %f %f %f", &x, &y, &z);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:70:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h: At top level:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: ‘get_pte_idx_from_string’ defined but not used [-Wunused-function]
  160 | static int get_pte_idx_from_string(const char *label) {
      |            ^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp: In function ‘(anonymous namespace)::read_structure(void*, int*, molfile_atom_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp:1786:22: warning: ‘strncpy’ specified bound 16 equals destination size [-Wstringop-truncation]
 1786 |               strncpy( ct.particles[to].type, v->second.funct.c_str(),
      |                      ^
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/avsplugin.cpp -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/avsplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp: In member function ‘(anonymous namespace)::SitesArray::insert_row(std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > const&)’:
contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp:784:16: warning: ‘strncpy’ specified bound 32 equals destination size [-Wstringop-truncation]
  784 |         strncpy(arr, value.substr(1,value.size()-2).c_str(), N);
      |                ^
contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp:786:16: warning: ‘strncpy’ specified bound 32 equals destination size [-Wstringop-truncation]
  786 |         strncpy(arr, value.c_str(), N);
      |                ^
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.c -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp: In member function ‘(anonymous namespace)::AtomArray::insert_row(std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > const&)’:
contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp:886:16: warning: ‘strncpy’ specified bound 16 equals destination size [-Wstringop-truncation]
  886 |         strncpy( a.name,
      |                ^
In file included from contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.c:42:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function ‘angular_momentum_expon’:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:545:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  545 |   for (i=0; i<strlen(ang_mom_str); i++) {
      |              ^
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: At top level:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1097:13: warning: ‘whereami’ defined but not used [-Wunused-function]
 1097 | static void whereami(FILE *file) {
      |             ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1077:13: warning: ‘thisline’ defined but not used [-Wunused-function]
 1077 | static void thisline(FILE *file) {
      |             ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1028:12: warning: ‘fpexpftoc’ defined but not used [-Wunused-function]
 1028 | static int fpexpftoc(char *ftocstr) {
      |            ^~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1006:12: warning: ‘have_keyline’ defined but not used [-Wunused-function]
 1006 | static int have_keyline(FILE *file, const char *keystring1,
      |            ^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:962:12: warning: ‘goto_keyline’ defined but not used [-Wunused-function]
  962 | static int goto_keyline(FILE *file, ...) {
      |            ^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:901:14: warning: ‘strtoupper’ defined but not used [-Wunused-function]
  901 | static char *strtoupper(char *s) {
      |              ^~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:895:12: warning: ‘iswhiteline’ defined but not used [-Wunused-function]
  895 | static int iswhiteline(char *s) {
      |            ^~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:846:13: warning: ‘eatwhitelines’ defined but not used [-Wunused-function]
  846 | static void eatwhitelines(FILE *file) {
      |             ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:835:13: warning: ‘eatline’ defined but not used [-Wunused-function]
  835 | static void eatline(FILE * fd, int n)
      |             ^~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:711:12: warning: ‘symmetry_expand’ defined but not used [-Wunused-function]
  711 | static int symmetry_expand(qm_atom_t **atoms, int numunique, int natoms,
      |            ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:585:13: warning: ‘print_matrix4’ defined but not used [-Wunused-function]
  585 | static void print_matrix4(const float mat[16]) {
      |             ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:540:13: warning: ‘angular_momentum_expon’ defined but not used [-Wunused-function]
  540 | static void angular_momentum_expon(int  *ang_mom_expon,
      |             ^~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:507:13: warning: ‘del_wavefunction’ defined but not used [-Wunused-function]
  507 | static void del_wavefunction(qm_timestep_t *ts) {
      |             ^~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:490:13: warning: ‘replace_wavefunction’ defined but not used [-Wunused-function]
  490 | static void replace_wavefunction(qm_timestep_t *ts, int n) {
      |             ^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:471:27: warning: ‘add_wavefunction’ defined but not used [-Wunused-function]
  471 | static qm_wavefunction_t* add_wavefunction(qm_timestep_t *ts) {
      |                           ^~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:437:18: warning: ‘init_qmdata’ defined but not used [-Wunused-function]
  437 | static qmdata_t* init_qmdata() {
      |                  ^~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function ‘int read_bgf_timestep(void*, int, molfile_timestep_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:243:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  243 |     fgets(line, LINESIZE, bgf->file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:252:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  252 |     fgets(line, LINESIZE, bgf->file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function ‘int read_bgf_bonds_aux(void*, int*, int**, int**, float**)’:
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:328:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  328 |     fgets(line, LINESIZE, bgf->file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:346:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  346 |   fgets(line, LINESIZE, bgf->file);
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:355:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  355 |     fgets(nextline, LINESIZE, bgf->file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:419:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  419 |         fgets(line, LINESIZE, bgf->file);
      |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function ‘int read_bgf_structure(void*, int*, molfile_atom_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:194:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  194 |     fgets(line, LINESIZE, bgf->file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:203:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  203 |     fgets(line, LINESIZE, bgf->file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function ‘void* open_bgf_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:59:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   59 |     fgets(line, LINESIZE, fd);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function ‘read_bgf_timestep(void*, int, molfile_timestep_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:120:12: warning: ‘strncpy’ output may be truncated copying 10 bytes from a string of length 224 [-Wstringop-truncation]
  120 |     strncpy(numstr, record + 31, 10);
      |            ^
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:125:12: warning: ‘strncpy’ output may be truncated copying 10 bytes from a string of length 214 [-Wstringop-truncation]
  125 |     strncpy(numstr+10, record + 41, 10);
      |            ^
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:130:12: warning: ‘strncpy’ output may be truncated copying 10 bytes from a string of length 204 [-Wstringop-truncation]
  130 |     strncpy(numstr+20, record + 51, 10);
      |            ^
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function ‘read_bgf_structure(void*, int*, molfile_atom_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:144:10: warning: ‘strncpy’ output may be truncated copying 5 bytes from a string of length 242 [-Wstringop-truncation]
  144 |   strncpy(name, record + 13, 5);
      |          ^
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:149:10: warning: ‘strncpy’ output may be truncated copying 4 bytes from a string of length 236 [-Wstringop-truncation]
  149 |   strncpy(resname, record + 19, 4);
      |          ^
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:167:10: warning: ‘strncpy’ output may be truncated copying 5 bytes from a string of length 194 [-Wstringop-truncation]
  167 |   strncpy(type, record+61, 5);
      |          ^
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/binposplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c: In function ‘open_binpos_read’:
contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c:64:3: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   64 |   fread(magicchar,sizeof(char),4,fd);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c:72:3: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   72 |   fread(&igarb,sizeof(int),1,fd);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.cpp -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp: In function ‘int read_brix_data(void*, int, float*, float*)’:
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:247:14: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  247 |         fread(brick, sizeof(char), 512, fd);
      |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp: In function ‘void* open_brix_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:79:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   79 |   fscanf(fd, "%3s", keyWord);
      |   ~~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:86:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   86 |   fscanf(fd, " %s %d %d %d", keyWord, &org_x, &org_y, &org_z);
      |   ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:93:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   93 |   fscanf(fd, " %s %d %d %d", keyWord, &ext_x, &ext_y, &ext_z);
      |   ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:100:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  100 |   fscanf(fd, " %s %f %f %f", keyWord, &grid_x, &grid_y, &grid_z);
      |   ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:109:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  109 |   fscanf(fd, " %s %f %f %f %f %f %f", keyWord,
      |   ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  110 |          &cell_x, &cell_y, &cell_z, &cell_alpha, &cell_beta, &cell_gamma);
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:123:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  123 |   fscanf(fd, " %s %f", keyWord, &prod);
      |   ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:128:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  128 |   fscanf(fd, " %s %f", keyWord, &plus);
      |   ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:135:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  135 |   fscanf(fd, " %s %f", keyWord, &sigma);
      |   ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/carplugin.c -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/carplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function ‘read_car_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:326:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  326 |     fgets(line, LINESIZE, data->file);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:339:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  339 |     fgets(line, LINESIZE, data->file);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:344:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  344 |     fgets(line, LINESIZE, data->file);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:349:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  349 |   fgets(line, LINESIZE, data->file);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:363:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  363 |       fgets(line, LINESIZE, data->file);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:373:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  373 |     fgets(line, LINESIZE, data->file);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function ‘read_car_structure’:
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:266:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  266 |     fgets(line, LINESIZE, data->file);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:268:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  268 |     fgets(line, LINESIZE, data->file);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:272:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  272 |   fgets(line, LINESIZE, data->file);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:295:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  295 |       fgets(line, LINESIZE, data->file);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:305:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  305 |     fgets(line, LINESIZE, data->file);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function ‘open_car_read’:
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:169:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  169 |   fgets(line, LINESIZE, fd);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:179:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  179 |   fgets(line, LINESIZE, fd);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:182:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  182 |     fgets(line, LINESIZE, fd);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:210:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  210 |   fgets(line, LINESIZE, fd);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:213:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  213 |   fgets(line, LINESIZE, fd);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:224:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  224 |     fgets(line, LINESIZE, fd);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:226:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  226 |     fgets(line, LINESIZE, fd);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:230:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  230 |   fgets(line, LINESIZE, fd);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:234:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  234 |       fgets(line, LINESIZE, fd);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:245:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  245 |     fgets(line, LINESIZE, fd);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function ‘read_car_structure’:
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:127:29: warning: ‘%d’ directive writing between 1 and 11 bytes into a region of size 8 [-Wformat-overflow=]
  127 |     sprintf(atom->resname, "%d", resid);
      |                             ^~
In function ‘read_car_structure_line’,
    inlined from ‘read_car_structure’ at contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:277:12:
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:127:28: note: directive argument in the range [-2147483648, 9999999]
  127 |     sprintf(atom->resname, "%d", resid);
      |                            ^~~~
In file included from /usr/include/stdio.h:906,
                 from contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:85:
In function ‘sprintf’,
    inlined from ‘read_car_structure_line’ at contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:127:5,
    inlined from ‘read_car_structure’ at contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:277:12:
/usr/include/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 2 and 12 bytes into a destination of size 8
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp: In function ‘int read_ccp4_data(void*, int, float*, float*)’:
contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:495:58: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  495 |         if ( fread(rowdata, sizeof(char), extent[0], fd) != extent[0] ) {
      |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:525:67: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  525 |         if ( fread(rowdata, sizeof(unsigned char), extent[0], fd) != extent[0] ) {
      |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:556:58: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  556 |         if (fread(rowdata, sizeof(float), extent[0], fd) != extent[0] ) {
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:588:58: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  588 |         if (fread(rowdata, sizeof(short), extent[0], fd) != extent[0] ) {
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:623:67: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  623 |         if (fread(rowdata, sizeof(unsigned short), extent[0], fd) != extent[0] ) {
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:655:60: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  655 |         if ( fread(rowdata, sizeof(uchar3), extent[0], fd) != extent[0] ) {
      |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp: In function ‘void* open_ccp4_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:304:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  304 |       fgets(symData, 81, fd);
      |       ~~~~~^~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:42:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h: At global scope:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: ‘void swap8_aligned(void*, long int)’ defined but not used [-Wunused-function]
  124 | static void swap8_aligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: ‘void swap8_unaligned(void*, long int)’ defined but not used [-Wunused-function]
   65 | static void swap8_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: ‘void swap4_unaligned(void*, long int)’ defined but not used [-Wunused-function]
   46 | static void swap4_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘void swap2_unaligned(void*, long int)’ defined but not used [-Wunused-function]
   32 | static void swap2_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp: In function ‘open_ccp4_read(char const*, char const*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:279:3: warning: ‘dataOffset’ may be used uninitialized [-Wmaybe-uninitialized]
  279 |   if (dataOffset != (CCP4HDSIZE + symBytes)) {
      |   ^~
contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:89:8: note: ‘dataOffset’ was declared here
   89 |   long dataOffset, filesize;
      |        ^~~~~~~~~~
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/corplugin.c -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/corplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/crdplugin.c -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/crdplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp: In function ‘void* open_cube_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:175:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  175 |   fgets(readbuf, 1023, cube->fd);    // go on to next line
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:181:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  181 |   fgets(readbuf, 1023, cube->fd); // skip second header line
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:326:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  326 |       fgets(readbuf, 1023, cube->fd);
      |       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:337:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  337 |       fgets(readbuf, 1023, cube->fd);
      |       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:339:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  339 |     fscanf(cube->fd, "%d", &cube->nsets);
      |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:344:13: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  344 |       fscanf(cube->fd, "%d", &orb);
      |       ~~~~~~^~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:349:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  349 |     fgets(readbuf, 1023, cube->fd);  // gobble up rest of line
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp: At global scope:
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:107:13: warning: ‘void cube_buildrotmat(cube_t*, float*, float*, float*)’ defined but not used [-Wunused-function]
  107 | static void cube_buildrotmat(cube_t *cube, float *o, float *a, float *b)
      |             ^~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:42:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: ‘int get_pte_idx_from_string(const char*)’ defined but not used [-Wunused-function]
  160 | static int get_pte_idx_from_string(const char *label) {
      |            ^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:133:12: warning: ‘int get_pte_idx(const char*)’ defined but not used [-Wunused-function]
  133 | static int get_pte_idx(const char *label)
      |            ^~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/mapplugin.cpp -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/mapplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp: In function ‘open_cube_read(char const*, char const*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:179:10: warning: ‘__strncat_chk’ output may be truncated copying 240 bytes from a string of length 1023 [-Wstringop-truncation]
  179 |   strncat(voltmpl.dataname, readbuf, 240);      // 240 is max space left after
      |          ^
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In file included from contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:51:
contrib/uiuc/plugins/molfile_plugin/src/fastio.h: In function ‘fio_readv’:
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:519:14: warning: comparison of integer expressions of different signedness: ‘fio_size_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  519 |       if (rc != iov[i].iov_len)
      |              ^~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp: In function ‘int read_mdf_bonds(void*, int*, int**, int**, float**, int**, int*, char***)’:
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:278:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  278 |     fgets(line, LINESIZE, mdf->file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:297:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  297 |       fgets(line, LINESIZE, mdf->file);
      |       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:319:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  319 |     fgets(line, LINESIZE, mdf->file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:357:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  357 |       fgets(line, LINESIZE, mdf->file);
      |       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp: In function ‘int read_mdf_structure(void*, int*, molfile_atom_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:223:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  223 |     fgets(line, LINESIZE, mdf->file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:241:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  241 |       fgets(line, LINESIZE, mdf->file);
      |       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp: In function ‘void* open_mdf_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:164:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  164 |     fgets(line, LINESIZE, fd);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:176:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  176 |     fgets(line, LINESIZE, fd);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:183:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  183 |       fgets(line, LINESIZE, fd);
      |       ~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c: In function ‘read_dcdheader’:
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:191:57: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  191 |   } else if (input_integer[0] == 84 && input_integer[1] == dcdcordmagic) {
      |                                                         ^~
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:204:54: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  204 |       if (input_integer[0] == 84 && input_integer[1] == dcdcordmagic) {
      |                                                      ^~
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:222:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  222 |     if (input_integer[0] != dcdcordmagic) {
      |                          ^~
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:399:45: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  399 |     if ((input_integer[0]+input_integer[1]) != ((*N)-(*NAMNF))*4) {
      |                                             ^~
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:416:45: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  416 |     if ((input_integer[0]+input_integer[1]) != ((*N)-(*NAMNF))*4) {
      |                                             ^~
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c: In function ‘read_dcdstep’:
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:621:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
  621 |         if (tmpbuf[i] != sizeof(float)*N) return DCD_BADFORMAT;
      |                       ^~
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:625:43: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
  625 |           if ((tmpbuf[2*i]+tmpbuf[2*i+1]) != sizeof(float)*N) return DCD_BADFORMAT;
      |                                           ^~
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:546:16: warning: variable ‘readlen’ set but not used [-Wunused-but-set-variable]
  546 |     fio_size_t readlen; /* number of bytes actually read            */
      |                ^~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:60:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h: At top level:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: ‘swap2_aligned’ defined but not used [-Wunused-function]
   96 | static void swap2_aligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘swap2_unaligned’ defined but not used [-Wunused-function]
   32 | static void swap2_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:609:12: warning: ‘fio_write_str’ defined but not used [-Wunused-function]
  609 | static int fio_write_str(fio_fd fd, const char *str) {
      |            ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:605:12: warning: ‘fio_read_int32’ defined but not used [-Wunused-function]
  605 | static int fio_read_int32(fio_fd fd, int *i) {
      |            ^~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:459:19: warning: ‘fio_readv’ defined but not used [-Wunused-function]
  459 | static fio_size_t fio_readv(fio_fd fd, const fio_iovec * iov, int iovcnt) {
      |                   ^~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function ‘int read_mol2_timestep(void*, int, molfile_timestep_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:275:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  275 |     fgets(line, LINESIZE, mol2->file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:289:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  289 |     fgets(line, LINESIZE, mol2->file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function ‘int read_mol2_bonds_aux(void*, int*, int**, int**, float**)’:
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:199:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  199 |     fgets(line, LINESIZE, mol2->file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:209:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  209 |     fgets(line, LINESIZE, mol2->file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function ‘int read_mol2(void*, int*, molfile_atom_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:127:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  127 |     fgets(line, LINESIZE, mol2->file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:138:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  138 |     fgets(line, LINESIZE, mol2->file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function ‘void* open_mol2_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:74:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   74 |     fgets(line, LINESIZE, fd);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:81:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   81 |   fgets(line, LINESIZE, fd);  // Read and ignore the mol_name
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:82:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   82 |   fgets(line, LINESIZE, fd);  // Read the molecule info
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:91:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   91 |   fgets(line, LINESIZE, fd);  // Read and ignore the mol_type
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:92:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   92 |   fgets(line, LINESIZE, fd);  // Read the charge_type
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In file included from contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:49:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function ‘angular_momentum_expon’:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:545:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  545 |   for (i=0; i<strlen(ang_mom_str); i++) {
      |              ^
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c: In function ‘read_molden_rundata’:
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:596:25: warning: variable ‘hessian_data’ set but not used [-Wunused-but-set-variable]
  596 |   molfile_qm_hessian_t *hessian_data;
      |                         ^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c: In function ‘count_orbitals’:
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:1165:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1165 |   fscanf(data->file, " Ene= %f\n", &orbenergy);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:1166:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1166 |   fscanf(data->file, " Spin= %s\n", spin);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:1167:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1167 |   fscanf(data->file, " Occup= %f\n", &occu);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function ‘eatline’:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:840:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  840 |     fgets(readbuf, 1024, fd);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c: In function ‘open_molden_read’:
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:224:11: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  224 |           fscanf(data->file, "%d", &natm);
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: At top level:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1097:13: warning: ‘whereami’ defined but not used [-Wunused-function]
 1097 | static void whereami(FILE *file) {
      |             ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1077:13: warning: ‘thisline’ defined but not used [-Wunused-function]
 1077 | static void thisline(FILE *file) {
      |             ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1006:12: warning: ‘have_keyline’ defined but not used [-Wunused-function]
 1006 | static int have_keyline(FILE *file, const char *keystring1,
      |            ^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:711:12: warning: ‘symmetry_expand’ defined but not used [-Wunused-function]
  711 | static int symmetry_expand(qm_atom_t **atoms, int numunique, int natoms,
      |            ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:585:13: warning: ‘print_matrix4’ defined but not used [-Wunused-function]
  585 | static void print_matrix4(const float mat[16]) {
      |             ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:507:13: warning: ‘del_wavefunction’ defined but not used [-Wunused-function]
  507 | static void del_wavefunction(qm_timestep_t *ts) {
      |             ^~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:490:13: warning: ‘replace_wavefunction’ defined but not used [-Wunused-function]
  490 | static void replace_wavefunction(qm_timestep_t *ts, int n) {
      |             ^~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:48:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:133:12: warning: ‘get_pte_idx’ defined but not used [-Wunused-function]
  133 | static int get_pte_idx(const char *label)
      |            ^~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:109:14: warning: ‘get_pte_vdw_radius’ defined but not used [-Wunused-function]
  109 | static float get_pte_vdw_radius(const int idx)
      |              ^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:102:14: warning: ‘get_pte_mass’ defined but not used [-Wunused-function]
  102 | static float get_pte_mass(const int idx)
      |              ^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:95:20: warning: ‘get_pte_label’ defined but not used [-Wunused-function]
   95 | static const char *get_pte_label(const int idx)
      |                    ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c: In function ‘read_dlpoly_config_structure’:
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:292:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  292 |   if (NULL == fgets(fbuffer, 1024, data->file))
      |   ^~
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:295:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  295 |     if (NULL == fgets(fbuffer, 1024, data->file))
      |     ^~
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c: In function ‘read_dlpoly_config_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:669:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  669 |   fgets(fbuffer, 1024, data->file);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c: In function ‘read_dlpoly_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:554:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  554 |   fgets(fbuffer, 1024, data->file);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c: In function ‘read_dlpoly_config_structure’:
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:362:5: warning: ‘strncpy’ output may be truncated copying 16 bytes from a string of length 4095 [-Wstringop-truncation]
  362 |     strncpy(atom->name, buf, sizeof(atom->name));
      |     ^
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c: In function ‘read_dlpoly_structure’:
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:267:5: warning: ‘strncpy’ output may be truncated copying 16 bytes from a string of length 4095 [-Wstringop-truncation]
  267 |     strncpy(atom->name, buf, sizeof(atom->name));
      |     ^
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp: In function ‘int read_dsn6_data(void*, int, float*, float*)’:
contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp:233:14: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  233 |         fread(brick, sizeof(char), 512, fd);
      |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp: In function ‘void* open_dsn6_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp:91:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   91 |   fread(fileHeader, sizeof(short), 19, fd);
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp:63:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h: At global scope:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: ‘void swap8_aligned(void*, long int)’ defined but not used [-Wunused-function]
  124 | static void swap8_aligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:110:13: warning: ‘void swap4_aligned(void*, long int)’ defined but not used [-Wunused-function]
  110 | static void swap4_aligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: ‘void swap8_unaligned(void*, long int)’ defined but not used [-Wunused-function]
   65 | static void swap8_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: ‘void swap4_unaligned(void*, long int)’ defined but not used [-Wunused-function]
   46 | static void swap4_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c: In function ‘read_molden_structure’:
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:350:7: warning: ‘strncpy’ output may be truncated copying 16 bytes from a string of length 1023 [-Wstringop-truncation]
  350 |       strncpy(atom->type, atname, sizeof(atom->type));
      |       ^
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:351:7: warning: ‘strncpy’ output may be truncated copying 16 bytes from a string of length 1023 [-Wstringop-truncation]
  351 |       strncpy(atom->name, atname, sizeof(atom->name));
      |       ^
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:317:7: warning: ‘strncpy’ output may be truncated copying 16 bytes from a string of length 1023 [-Wstringop-truncation]
  317 |       strncpy(atom->name, atname,     sizeof(atom->name));
      |       ^
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:326:7: warning: ‘strncpy’ output may be truncated copying 11 bytes from a string of length 1023 [-Wstringop-truncation]
  326 |       strncpy(data->atoms[i].type, atname, sizeof(data->atoms[i].type));
      |       ^
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp: In function ‘int read_rawgraphics(void*, int*, const molfile_graphics_t**)’:
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:91:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   91 |     fgets(line, 80, infile);
      |     ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:116:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  116 |     fgets(line, 80, infile);
      |     ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:132:9: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  132 |    fgets(line, 80, infile);
      |    ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:149:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  149 |      fgets(line, 80, infile);
      |      ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:155:20: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  155 |               fgets(line, 80, infile);
      |               ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:161:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  161 |      fgets(line, 80, infile); //one more read to keep us in sync
      |      ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:170:27: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  170 |                      fgets(line, 80, infile);
      |                      ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:217:15: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  217 |          fgets(line, 80, infile);
      |          ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:237:23: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  237 |                  fgets(line, 80, infile);
      |                  ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:256:15: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  256 |          fgets(line, 80, infile);
      |          ~~~~~^~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.cpp -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c: In function ‘read_next_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c:103:10: warning: variable ‘numatoms’ set but not used [-Wunused-but-set-variable]
  103 |   int i, numatoms;
      |          ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c: In function ‘write_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c:206:55: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  206 |     if (fwrite(tmp, sizeof(double), 3*n, namdbin->fd) != 3*n) {
      |                                                       ^~
contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c: In function ‘open_namdbin_read’:
contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c:78:3: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   78 |   fread(&filen, sizeof(namdbin_int32), 1, fd);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c: In function ‘read_mmtk_cdf_structure’:
contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c:730:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
  730 |       if (len > sizeof(name)) {
      |               ^
contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c: In function ‘read_mmtk_cdf_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c:1060:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
 1060 |     for (i=0; i<(3 * mmtk->atom_numberdim); i++) {
      |                ^
In file included from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:71:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: ‘void swap8_aligned(void*, long int)’ defined but not used [-Wunused-function]
  124 | static void swap8_aligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:110:13: warning: ‘void swap4_aligned(void*, long int)’ defined but not used [-Wunused-function]
  110 | static void swap4_aligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: ‘void swap2_aligned(void*, long int)’ defined but not used [-Wunused-function]
   96 | static void swap2_aligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘void swap2_unaligned(void*, long int)’ defined but not used [-Wunused-function]
   32 | static void swap2_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:70:
contrib/uiuc/plugins/molfile_plugin/src/vmddir.h:145:12: warning: ‘int vmd_file_is_executable(const char*)’ defined but not used [-Wunused-function]
  145 | static int vmd_file_is_executable(const char * filename) {
      |            ^~~~~~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/offplugin.cpp -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/offplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp: In function ‘int read_parm7_structure(void*, int*, molfile_atom_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp:78:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   78 |         fgets(buf, 85, file);
      |         ~~~~~^~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp:25:
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function ‘int parse_parm7_atoms(const char*, int, molfile_atom_t*, FILE*)’:
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:204:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  204 |       fgets(buf, 85, file);
      |       ~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function ‘int parse_parm7_atype(const char*, int, molfile_atom_t*, FILE*)’:
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:257:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  257 |       fgets(buf, 85, file);
      |       ~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function ‘int parse_parm7_resnames(const char*, int, char*, FILE*)’:
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:275:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  275 |       fgets(buf, 85, file);
      |       ~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function ‘int parse_parm7_respointers(const char*, int, molfile_atom_t*, int, const char*, FILE*)’:
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:289:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  289 |   fscanf(file, " %d", &cur);
      |   ~~~~~~^~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function ‘parmstruct* read_parm7_header(FILE*)’:
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:368:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  368 |   fgets(sdum, 512, file);
      |   ~~~~~^~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:371:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  371 |   fscanf(file, "%s\n", sdum); // "%FLAG"
      |   ~~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:378:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  378 |   fscanf(file, "%s\n", sdum); // "TITLE" or "CTITLE"
      |   ~~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:385:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  385 |   fscanf(file, "%s\n", sdum); // "FORMAT (20a4)"
      |   ~~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:399:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  399 |   fgets(prm->title, sizeof(prm->title), file);
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:427:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  427 |     fgets(sdum, sizeof(sdum), file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:439:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  439 |   fscanf(file,parm7,
      |   ~~~~~~^~~~~~~~~~~~
  440 |          &prm->Natom,  &prm->Ntypes, &prm->Nbonh, &prm->Nbona,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  441 |          &prm->Ntheth, &prm->Ntheta, &prm->Nphih, &prm->Nphia,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  442 |          &prm->Jparm,  &prm->Nparm);
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:443:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  443 |   fscanf(file, parm7,
      |   ~~~~~~^~~~~~~~~~~~~
  444 |          &prm->Nnb,   &prm->Nres,   &prm->Mbona,  &prm->Mtheta,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  445 |          &prm->Mphia, &prm->Numbnd, &prm->Numang, &prm->Mptra,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  446 |          &prm->Natyp, &prm->Nphb);
      |          ~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:447:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  447 |   fscanf(file, parm7,  &prm->Ifpert, &prm->Nbper,  &prm->Ngper,
      |   ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  448 |          &prm->Ndper, &prm->Mbper,  &prm->Mgper, &prm->Mdper,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  449 |          &prm->IfBox, &prm->Nmxrs,  &prm->IfCap);
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:451:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  451 |   fscanf(file,"%8d",&prm->Numextra); //BB
      |   ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function ‘int read_parm7_flag(FILE*, const char*, const char*)’:
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:79:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   79 |   fscanf(file, "%s\n", buf);
      |   ~~~~~~^~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:87:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   87 |   fscanf(file, "%s\n", buf);
      |   ~~~~~~^~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:97:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   97 |   fscanf(file, "%s\n", buf);
      |   ~~~~~~^~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function ‘read_parm7_structure(void*, int*, molfile_atom_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:277:12: warning: ‘__strncpy_chk’ output may be truncated copying 4 bytes from a string of length 84 [-Wstringop-truncation]
  277 |     strncpy(resnames, buf+4*j, 4);
      |            ^
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:259:12: warning: ‘strncpy’ output may be truncated copying 4 bytes from a string of length 84 [-Wstringop-truncation]
  259 |     strncpy(atom->type, buf+4*j, 4);
      |            ^
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:206:12: warning: ‘strncpy’ output may be truncated copying 4 bytes from a string of length 84 [-Wstringop-truncation]
  206 |     strncpy(atom->name, buf+4*j, 4);
      |            ^
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/parmplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In file included from contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp:24:
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h: In member function ‘int {anonymous}::ReadPARM::readparm(FILE*)’:
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:435:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  435 |           fscanf(file, " " DBLFMT, &prm->Charges[i]);
      |           ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:444:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  444 |           fscanf(file, " " DBLFMT, &prm->Masses[i]);
      |           ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:510:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  510 |           fscanf(file, " " DBLFMT, &prm->Rk[i]);
      |           ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:517:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  517 |           fscanf(file, " " DBLFMT, &prm->Req[i]);
      |           ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:524:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  524 |           fscanf(file, " " DBLFMT, &prm->Tk[i]);
      |           ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:531:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  531 |           fscanf(file, " " DBLFMT, &prm->Teq[i]);
      |           ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:538:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  538 |           fscanf(file, " " DBLFMT, &prm->Pk[i]);
      |           ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:545:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  545 |           fscanf(file, " " DBLFMT, &prm->Pn[i]);
      |           ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:552:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  552 |           fscanf(file, " " DBLFMT, &prm->Phase[i]);
      |           ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:559:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  559 |           fscanf(file, " " DBLFMT, &prm->Solty[i]);
      |           ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:567:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  567 |           fscanf(file, " " DBLFMT, &prm->Cn1[i]);
      |           ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:575:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  575 |           fscanf(file, " " DBLFMT, &prm->Cn2[i]);
      |           ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:756:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  756 |           fscanf(file, " " DBLFMT, &prm->HB12[i]);
      |           ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:763:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  763 |           fscanf(file, " " DBLFMT, &prm->HB6[i]);
      |           ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:771:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  771 |           fscanf(file, " " DBLFMT, &H[i]);
      |           ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:853:23: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  853 |                 fscanf(file, " " DBLFMT " " DBLFMT " " DBLFMT,
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  854 |                                 &prm->Box[0], &prm->Box[1], &prm->Box[2]);
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:867:23: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  867 |                 fscanf(file, " %d " DBLFMT " " DBLFMT " " DBLFMT " " DBLFMT,
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  868 |                                 &prm->Natcap, &prm->Cutcap,
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~
  869 |                                 &prm->Xcap, &prm->Ycap, &prm->Zcap);
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.cpp -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In file included from contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.cpp:53:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: ‘void swap2_aligned(void*, long int)’ defined but not used [-Wunused-function]
   96 | static void swap2_aligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: ‘void swap8_unaligned(void*, long int)’ defined but not used [-Wunused-function]
   65 | static void swap8_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: ‘void swap4_unaligned(void*, long int)’ defined but not used [-Wunused-function]
   46 | static void swap4_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘void swap2_unaligned(void*, long int)’ defined but not used [-Wunused-function]
   32 | static void swap2_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In file included from contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:32:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:133:12: warning: ‘get_pte_idx’ defined but not used [-Wunused-function]
  133 | static int get_pte_idx(const char *label)
      |            ^~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:31:
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h: In function ‘read_next_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:119:3: warning: ‘strncpy’ output may be truncated copying 80 bytes from a string of length 82 [-Wstringop-truncation]
  119 |   strncpy(tmp, record, PDB_RECORD_LENGTH);
      |   ^
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:144:5: warning: ‘strncpy’ output may be truncated copying 8 bytes from a string of length 52 [-Wstringop-truncation]
  144 |     strncpy(numstr, record + 30, 8);
      |     ^
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:149:5: warning: ‘strncpy’ output may be truncated copying 8 bytes from a string of length 44 [-Wstringop-truncation]
  149 |     strncpy(numstr+10, record + 38, 8);
      |     ^
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:154:5: warning: ‘strncpy’ output may be truncated copying 8 bytes from a string of length 36 [-Wstringop-truncation]
  154 |     strncpy(numstr+20, record + 46, 8);
      |     ^
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:159:5: warning: ‘strncpy’ output may be truncated copying 6 bytes from a string of length 28 [-Wstringop-truncation]
  159 |     strncpy(numstr+30, record + 54, 6);
      |     ^
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:164:5: warning: ‘strncpy’ output may be truncated copying 6 bytes from a string of length 22 [-Wstringop-truncation]
  164 |     strncpy(numstr+40, record + 60, 6);
      |     ^
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h: In function ‘open_pdb_read’:
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:190:5: warning: ‘strncpy’ output may be truncated copying 9 bytes from a string of length 32 [-Wstringop-truncation]
  190 |     strncpy(date, record + 50, 9);
      |     ^
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:200:5: warning: ‘strncpy’ output may be truncated copying 4 bytes from a string of length 20 [-Wstringop-truncation]
  200 |     strncpy(pdbcode, record + 62, 4);
      |     ^
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h: In function ‘read_pdb_structure’:
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:299:3: warning: ‘strncpy’ output may be truncated copying 4 bytes from a string of length 70 [-Wstringop-truncation]
  299 |   strncpy(name, record + 12, 4);
      |   ^
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:304:3: warning: ‘strncpy’ output may be truncated copying 1 byte from a string of length 66 [-Wstringop-truncation]
  304 |   strncpy(altloc, record + 16, 1);
      |   ^
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:308:3: warning: ‘strncpy’ output may be truncated copying 4 bytes from a string of length 65 [-Wstringop-truncation]
  308 |   strncpy(resname, record + 17, 4);
      |   ^
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:317:3: warning: ‘strncpy’ output may be truncated copying 4 bytes from a string of length 60 [-Wstringop-truncation]
  317 |   strncpy(resid, record + 22, 4);
      |   ^
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:159:5: warning: ‘strncpy’ output may be truncated copying 6 bytes from a string of length 28 [-Wstringop-truncation]
  159 |     strncpy(numstr+30, record + 54, 6);
      |     ^
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:164:5: warning: ‘strncpy’ output may be truncated copying 6 bytes from a string of length 22 [-Wstringop-truncation]
  164 |     strncpy(numstr+40, record + 60, 6);
      |     ^
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:330:5: warning: ‘strncpy’ output may be truncated copying 4 bytes from a string of length 10 [-Wstringop-truncation]
  330 |     strncpy(segname, record + 72, 4);
      |     ^
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:339:5: warning: ‘strncpy’ output may be truncated copying 2 bytes from a string of length 6 [-Wstringop-truncation]
  339 |     strncpy(elementsymbol, record + 76, 2);
      |     ^
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function ‘int getUniqueResID(char*, int)’:
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:443:7: warning: unused variable ‘i’ [-Wunused-variable]
  443 |   int i, uid;
      |       ^
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function ‘int parseStructureFaster(molfile_atom_t*, int*, pdbxParser*)’:
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:484:47: warning: unused variable ‘j’ [-Wunused-variable]
  484 |   int i, count, atomdata, pos, idx, xyzcount, j;
      |                                               ^
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:503:8: warning: unused variable ‘oldChain’ [-Wunused-variable]
  503 |   char oldChain[8];
      |        ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function ‘bool readAngleBonds(molfile_atom_t*, pdbxParser*)’:
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:803:7: warning: unused variable ‘bondTable’ [-Wunused-variable]
  803 |   int bondTable[32];
      |       ^~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:807:15: warning: unused variable ‘j’ [-Wunused-variable]
  807 |   int i, pos, j, k;
      |               ^
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:811:8: warning: unused variable ‘modelNum’ [-Wunused-variable]
  811 |   char modelNum[8];
      |        ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:822:20: warning: unused variable ‘atom’ [-Wunused-variable]
  822 |   molfile_atom_t * atom;
      |                    ^~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:884:7: warning: unused variable ‘test’ [-Wunused-variable]
  884 |   int test = parser->nbonds + bnum;
      |       ^~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function ‘bool readRMSDBonds(molfile_atom_t*, pdbxParser*)’:
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:984:7: warning: unused variable ‘bondTable’ [-Wunused-variable]
  984 |   int bondTable[32];
      |       ^~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:988:15: warning: unused variable ‘j’ [-Wunused-variable]
  988 |   int i, pos, j, k;
      |               ^
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:991:8: warning: unused variable ‘modelNum’ [-Wunused-variable]
  991 |   char modelNum[8];
      |        ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:1002:20: warning: unused variable ‘atom’ [-Wunused-variable]
 1002 |   molfile_atom_t * atom;
      |                    ^~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function ‘void* open_file_write(const char*, const char*, int)’:
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:1409:9: warning: unused variable ‘fd’ [-Wunused-variable]
 1409 |   FILE* fd;
      |         ^~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: At global scope:
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:313:14: warning: ‘float stringToFloat(char*)’ defined but not used [-Wunused-function]
  313 | static float stringToFloat(char * str) {
      |              ^~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:25:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:133:12: warning: ‘int get_pte_idx(const char*)’ defined but not used [-Wunused-function]
  133 | static int get_pte_idx(const char *label)
      |            ^~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:95:20: warning: ‘const char* get_pte_label(int)’ defined but not used [-Wunused-function]
   95 | static const char *get_pte_label(const int idx)
      |                    ^~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/phiplugin.cpp -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/phiplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/phiplugin.cpp: In function ‘read_phi_data(void*, int, float*, float*)’:
contrib/uiuc/plugins/molfile_plugin/src/phiplugin.cpp:216:14: warning: ‘strncpy’ output may be truncated copying 4 bytes from a string of length 84 [-Wstringop-truncation]
  216 |       strncpy(currNum, currChar, 4);
      |              ^
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/pltplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function ‘DDmkdir(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned int, int, int)’:
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:714:23: warning: ‘%03x’ directive writing between 3 and 8 bytes into a region of size 6 [-Wformat-overflow=]
  714 |         sprintf(sub, "%03x/", i);
      |                       ^~~~
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:714:22: note: directive argument in the range [0, 2147483646]
  714 |         sprintf(sub, "%03x/", i);
      |                      ^~~~~~~
In file included from /usr/include/stdio.h:906,
                 from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.hxx:56,
                 from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:47:
In function ‘sprintf’,
    inlined from ‘DDmkdir(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned int, int, int)’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:714:9:
/usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 5 and 10 bytes into a destination of size 6
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function ‘DDmkdir(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned int, int, int)’:
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:722:30: warning: ‘%03x’ directive writing between 3 and 8 bytes into a region of size 6 [-Wformat-overflow=]
  722 |             sprintf(subsub, "%03x", j);
      |                              ^~~~
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:722:29: note: directive argument in the range [0, 2147483646]
  722 |             sprintf(subsub, "%03x", j);
      |                             ^~~~~~
In function ‘sprintf’,
    inlined from ‘DDmkdir(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned int, int, int)’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:722:13:
/usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 4 and 9 bytes into a destination of size 6
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp: In function ‘int read_plt_data(void*, int, float*, float*)’:
contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp:143:51: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  143 |   if ( fread(datablock, sizeof(float), ndata, fd) != ndata ) {
      |        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp: In function ‘void* open_plt_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp:69:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   69 |   fread(intHeader, sizeof(int), 5, fd);
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp:82:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   82 |   fread(floatHeader, sizeof(float), 6, fd);
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp:42:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h: At global scope:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: ‘void swap8_aligned(void*, long int)’ defined but not used [-Wunused-function]
  124 | static void swap8_aligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: ‘void swap2_aligned(void*, long int)’ defined but not used [-Wunused-function]
   96 | static void swap2_aligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: ‘void swap8_unaligned(void*, long int)’ defined but not used [-Wunused-function]
   65 | static void swap8_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: ‘void swap4_unaligned(void*, long int)’ defined but not used [-Wunused-function]
   46 | static void swap4_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘void swap2_unaligned(void*, long int)’ defined but not used [-Wunused-function]
   32 | static void swap2_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/plyplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In file included from contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp:30:
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function ‘void put_element_ply(PlyFile*, void*)’:
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:459:7: warning: unused variable ‘i’ [-Wunused-variable]
  459 |   int i,j,k;
      |       ^
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function ‘void ascii_get_element(PlyFile*, char*)’:
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1407:7: warning: unused variable ‘i’ [-Wunused-variable]
 1407 |   int i,j,k;
      |       ^
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function ‘void binary_get_element(PlyFile*, char*)’:
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1541:7: warning: unused variable ‘i’ [-Wunused-variable]
 1541 |   int i,j,k;
      |       ^
contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp: In function ‘int read_rawgraphics(void*, int*, const molfile_graphics_t**)’:
contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp:107:17: warning: variable ‘vert_other’ set but not used [-Wunused-but-set-variable]
  107 |   PlyOtherProp *vert_other=NULL;
      |                 ^~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp:108:17: warning: variable ‘face_other’ set but not used [-Wunused-but-set-variable]
  108 |   PlyOtherProp *face_other=NULL;
      |                 ^~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function ‘void binary_get_element(PlyFile*, char*)’:
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1629:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1629 |       fread (&len, sizeof(int), 1, fp);
      |       ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1631:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1631 |       fread (str, len, 1, fp);
      |       ~~~~~~^~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function ‘void get_binary_item(FILE*, int, int*, unsigned int*, double*)’:
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2057:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2057 |       fread (ptr, 1, 1, fp);
      |       ~~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2063:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2063 |       fread (ptr, 1, 1, fp);
      |       ~~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2069:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2069 |       fread (ptr, 2, 1, fp);
      |       ~~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2075:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2075 |       fread (ptr, 2, 1, fp);
      |       ~~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2081:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2081 |       fread (ptr, 4, 1, fp);
      |       ~~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2087:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2087 |       fread (ptr, 4, 1, fp);
      |       ~~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2093:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2093 |       fread (ptr, 4, 1, fp);
      |       ~~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2099:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2099 |       fread (ptr, 8, 1, fp);
      |       ~~~~~~^~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp:27:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h: At global scope:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: ‘void swap8_aligned(void*, long int)’ defined but not used [-Wunused-function]
  124 | static void swap8_aligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:110:13: warning: ‘void swap4_aligned(void*, long int)’ defined but not used [-Wunused-function]
  110 | static void swap4_aligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: ‘void swap2_aligned(void*, long int)’ defined but not used [-Wunused-function]
   96 | static void swap2_aligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: ‘void swap8_unaligned(void*, long int)’ defined but not used [-Wunused-function]
   65 | static void swap8_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: ‘void swap4_unaligned(void*, long int)’ defined but not used [-Wunused-function]
   46 | static void swap4_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘void swap2_unaligned(void*, long int)’ defined but not used [-Wunused-function]
   32 | static void swap2_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function ‘recreate_command_line’:
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1334:11: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=]
 1334 |   line[0] = '\0';
      |   ~~~~~~~~^~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1333:26: note: destination object of size 0 allocated by ‘malloc’
 1333 |   line = (char *) malloc (sizeof(char) * len);
      |                   ~~~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function ‘ascii_get_element(PlyFile*, char*)’:
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1520:14: warning: ‘other_data’ may be used uninitialized [-Wmaybe-uninitialized]
 1520 |         item = elem_data + prop->offset;
      |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1423:9: note: ‘other_data’ was declared here
 1423 |   char *other_data;
      |         ^~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1497:18: warning: ‘item’ may be used uninitialized [-Wmaybe-uninitialized]
 1497 |             item += item_size;
      |             ~~~~~^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1413:20: note: ‘item’ was declared here
 1413 |   char *elem_data,*item;
      |                    ^~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function ‘binary_get_element(PlyFile*, char*)’:
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1643:14: warning: ‘other_data’ may be used uninitialized [-Wmaybe-uninitialized]
 1643 |         item = elem_data + prop->offset;
      |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1555:9: note: ‘other_data’ was declared here
 1555 |   char *other_data;
      |         ^~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1620:18: warning: ‘item’ may be used uninitialized [-Wmaybe-uninitialized]
 1620 |             item += item_size;
      |             ~~~~~^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1546:9: note: ‘item’ was declared here
 1546 |   char *item;
      |         ^~~~
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function ‘framefile(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned long, unsigned long, int, int)’:
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:675:35: warning: ‘__sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
  675 |             sprintf(answer, "%03x/", d1);
      |                                   ^
In function ‘sprintf’,
    inlined from ‘DDreldir(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, int, int)’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:675:13,
    inlined from ‘framefile(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned long, unsigned long, int, int)’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:779:23:
/usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 5 and 10 bytes into a destination of size 9
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function ‘framefile(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned long, unsigned long, int, int)’:
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:673:35: warning: ‘%03x’ directive writing between 3 and 8 bytes into a region of size between 0 and 5 [-Wformat-overflow=]
  673 |             sprintf(answer, "%03x/%03x/", d1, d2);
      |                                   ^~~~
In function ‘DDreldir(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, int, int)’,
    inlined from ‘framefile(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned long, unsigned long, int, int)’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:779:23:
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:673:29: note: directive argument in the range [0, 2147483646]
  673 |             sprintf(answer, "%03x/%03x/", d1, d2);
      |                             ^~~~~~~~~~~~
In function ‘sprintf’,
    inlined from ‘DDreldir(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, int, int)’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:673:13,
    inlined from ‘framefile(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned long, unsigned long, int, int)’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:779:23:
/usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 9 and 19 bytes into a destination of size 9
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c: In function ‘get_atom_radius’:
contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:166:16: warning: variable ‘type’ set but not used [-Wunused-but-set-variable]
  166 |   char *name, *type;
      |                ^~~~
contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:166:9: warning: variable ‘name’ set but not used [-Wunused-but-set-variable]
  166 |   char *name, *type;
      |         ^~~~
contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c: In function ‘read_pqr_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:109:3: warning: ‘strncpy’ output may be truncated copying 80 bytes from a string of length 81 [-Wstringop-truncation]
  109 |   strncpy(tmp, record, PQR_RECORD_LENGTH);
      |   ^
contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c: In function ‘read_pqr_structure’:
contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:137:3: warning: ‘strncpy’ output may be truncated copying 4 bytes from a string of length 68 [-Wstringop-truncation]
  137 |   strncpy(name, record+12, 4);    name[4] = 0;
      |   ^
contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:138:3: warning: ‘strncpy’ output may be truncated copying 4 bytes from a string of length 63 [-Wstringop-truncation]
  138 |   strncpy(resname, record+17, 4); resname[4] = 0;
      |   ^
contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:139:3: warning: ‘strncpy’ output may be truncated copying 1 byte from a string of length 59 [-Wstringop-truncation]
  139 |   strncpy(chain, record+21, 1);   chain[1] = 0;
      |   ^
contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:140:3: warning: ‘strncpy’ output may be truncated copying 4 bytes from a string of length 58 [-Wstringop-truncation]
  140 |   strncpy(resid, record+22, 4);   resid[4] = 0;
      |   ^
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/psfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c: In function ‘write_psf_structure’:
contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c:782:33: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  782 |       if (strlen(atoms[i].type) > fw) {
      |                                 ^
In file included from contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c:30:
contrib/uiuc/plugins/molfile_plugin/src/fortread.h: At top level:
contrib/uiuc/plugins/molfile_plugin/src/fortread.h:103:12: warning: ‘fortread_4’ defined but not used [-Wunused-function]
  103 | static int fortread_4(void *dest, int n, int swap, FILE *fd) {
      |            ^~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/fortread.h:55:12: warning: ‘fort_get_endian_reclen’ defined but not used [-Wunused-function]
   55 | static int fort_get_endian_reclen(int reclen, int word0, int word1,
      |            ^~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/fortread.h:36:12: warning: ‘fort_eat_recmark’ defined but not used [-Wunused-function]
   36 | static int fort_eat_recmark(FILE *ifp, int recmarklen) {
      |            ^~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/fortread.h:28:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: ‘swap8_aligned’ defined but not used [-Wunused-function]
  124 | static void swap8_aligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: ‘swap2_aligned’ defined but not used [-Wunused-function]
   96 | static void swap2_aligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: ‘swap8_unaligned’ defined but not used [-Wunused-function]
   65 | static void swap8_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: ‘swap4_unaligned’ defined but not used [-Wunused-function]
   46 | static void swap4_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘swap2_unaligned’ defined but not used [-Wunused-function]
   32 | static void swap2_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/dxplugin.cpp -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/dxplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.cpp -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/edmplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp: In function ‘int read_edm_data(void*, int, float*, float*)’:
contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp:240:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  240 |   fgets(readbuf, 13, edm->fd);
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp: In function ‘void eatline(FILE*)’:
contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp:44:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   44 |   fgets(readbuf, 1024, fd);    // go on to next line
      |   ~~~~~^~~~~~~~~~~~~~~~~~~
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c: In function ‘open_rst_read’:
contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c:48:11: warning: variable ‘timesteprst’ set but not used [-Wunused-but-set-variable]
   48 |   double  timesteprst;
      |           ^~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c:67:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   67 |   fgets(title, 82, fd);
      |   ^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c:70:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   70 |   fgets(line, 82, fd);
      |   ^~~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/situsplugin.cpp -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/situsplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp: In function ‘void* open_fs4_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp:79:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   79 |   fread(&dataBegin, sizeof(int), 1, fd);
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp:48:
contrib/uiuc/plugins/molfile_plugin/src/fortread.h: At global scope:
contrib/uiuc/plugins/molfile_plugin/src/fortread.h:133:13: warning: ‘void strnwscpy(char*, const char*, int)’ defined but not used [-Wunused-function]
  133 | static void strnwscpy(char *target, const char *source, const int len) {
      |             ^~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/fortread.h:55:12: warning: ‘int fort_get_endian_reclen(int, int, int, int*, int*)’ defined but not used [-Wunused-function]
   55 | static int fort_get_endian_reclen(int reclen, int word0, int word1,
      |            ^~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/fortread.h:36:12: warning: ‘int fort_eat_recmark(FILE*, int)’ defined but not used [-Wunused-function]
   36 | static int fort_eat_recmark(FILE *ifp, int recmarklen) {
      |            ^~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp:47:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: ‘void swap8_aligned(void*, long int)’ defined but not used [-Wunused-function]
  124 | static void swap8_aligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: ‘void swap2_aligned(void*, long int)’ defined but not used [-Wunused-function]
   96 | static void swap2_aligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: ‘void swap8_unaligned(void*, long int)’ defined but not used [-Wunused-function]
   65 | static void swap8_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: ‘void swap4_unaligned(void*, long int)’ defined but not used [-Wunused-function]
   46 | static void swap4_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘void swap2_unaligned(void*, long int)’ defined but not used [-Wunused-function]
   32 | static void swap2_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In file included from contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:160:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function ‘angular_momentum_expon’:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:545:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  545 |   for (i=0; i<strlen(ang_mom_str); i++) {
      |              ^
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘have_gamess’:
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1106:8: warning: variable ‘word’ set but not used [-Wunused-but-set-variable]
 1106 |   char word[3][BUFSIZ];
      |        ^~~~
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘get_basis_stats’:
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:2264:8: warning: variable ‘word’ set but not used [-Wunused-but-set-variable]
 2264 |   char word[7][BUFSIZ];
      |        ^~~~
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘get_wavefunction’:
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:3573:8: warning: variable ‘word’ set but not used [-Wunused-but-set-variable]
 3573 |   char word[6][BUFSIZ];
      |        ^~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function ‘eatline’:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:840:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  840 |     fgets(readbuf, 1024, fd);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: At top level:
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1002:13: warning: ‘print_input_data’ defined but not used [-Wunused-function]
 1002 | static void print_input_data(qmdata_t *data) {
      |             ^~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:162:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:133:12: warning: ‘get_pte_idx’ defined but not used [-Wunused-function]
  133 | static int get_pte_idx(const char *label)
      |            ^~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:109:14: warning: ‘get_pte_vdw_radius’ defined but not used [-Wunused-function]
  109 | static float get_pte_vdw_radius(const int idx)
      |              ^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:102:14: warning: ‘get_pte_mass’ defined but not used [-Wunused-function]
  102 | static float get_pte_mass(const int idx)
      |              ^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:95:20: warning: ‘get_pte_label’ defined but not used [-Wunused-function]
   95 | static const char *get_pte_label(const int idx)
      |                    ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1097:13: warning: ‘whereami’ defined but not used [-Wunused-function]
 1097 | static void whereami(FILE *file) {
      |             ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1077:13: warning: ‘thisline’ defined but not used [-Wunused-function]
 1077 | static void thisline(FILE *file) {
      |             ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1028:12: warning: ‘fpexpftoc’ defined but not used [-Wunused-function]
 1028 | static int fpexpftoc(char *ftocstr) {
      |            ^~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:901:14: warning: ‘strtoupper’ defined but not used [-Wunused-function]
  901 | static char *strtoupper(char *s) {
      |              ^~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:895:12: warning: ‘iswhiteline’ defined but not used [-Wunused-function]
  895 | static int iswhiteline(char *s) {
      |            ^~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:585:13: warning: ‘print_matrix4’ defined but not used [-Wunused-function]
  585 | static void print_matrix4(const float mat[16]) {
      |             ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp: In function ‘int read_spider_data(void*, int, float*, float*)’:
contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp:286:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  286 |   fread(datablock, total * sizeof(float), 1, fd);
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp:36:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h: At global scope:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: ‘void swap8_aligned(void*, long int)’ defined but not used [-Wunused-function]
  124 | static void swap8_aligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: ‘void swap2_aligned(void*, long int)’ defined but not used [-Wunused-function]
   96 | static void swap2_aligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: ‘void swap8_unaligned(void*, long int)’ defined but not used [-Wunused-function]
   65 | static void swap8_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: ‘void swap4_unaligned(void*, long int)’ defined but not used [-Wunused-function]
   46 | static void swap4_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘void swap2_unaligned(void*, long int)’ defined but not used [-Wunused-function]
   32 | static void swap2_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/stlplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘read_gamess_rundata’:
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:615:3: warning: ‘strncpy’ output may be truncated copying 81 bytes from a string of length 8191 [-Wstringop-truncation]
  615 |   strncpy(sys_data->basis_string, data->basis_string,
      |   ^
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:620:3: warning: ‘strncpy’ output may be truncated copying 4096 bytes from a string of length 8191 [-Wstringop-truncation]
  620 |   strncpy(sys_data->runtitle, data->runtitle, sizeof(sys_data->runtitle));
      |   ^
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:621:3: warning: ‘strncpy’ output may be truncated copying 81 bytes from a string of length 8191 [-Wstringop-truncation]
  621 |   strncpy(sys_data->geometry, data->geometry, sizeof(sys_data->geometry));
      |   ^
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:622:3: warning: ‘strncpy’ output may be truncated copying 81 bytes from a string of length 8191 [-Wstringop-truncation]
  622 |   strncpy(sys_data->version_string, data->version_string,
      |   ^
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘get_coordinates’:
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1618:5: warning: ‘strncpy’ output may be truncated copying 11 bytes from a string of length 8191 [-Wstringop-truncation]
 1618 |     strncpy(atm->type, atname, sizeof(atm->type));
      |     ^
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp: In function ‘int read_rawgraphics(void*, int*, const molfile_graphics_t**)’:
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:96:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   96 |     fgets(line, 80, infile);
      |     ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:104:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  104 |     fgets(line, 80, infile);
      |     ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:119:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  119 |       fgets(line, 80, infile);
      |       ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:131:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  131 |         fgets(line, 80, infile);
      |         ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:153:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  153 |       fgets(line, 80, infile);
      |       ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:162:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  162 |       fgets(line, 80, infile);
      |       ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:171:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  171 |       fgets(line, 80, infile);
      |       ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘get_runtitle’:
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1459:3: warning: ‘strncpy’ specified bound 8192 equals destination size [-Wstringop-truncation]
 1459 |   strncpy(data->runtitle,trimright(buffer),sizeof(data->runtitle));
      |   ^
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.c -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.c: In function ‘read_tinker_structure’:
contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.c:103:5: warning: ‘strncpy’ output may be truncated copying 16 bytes from a string of length 1023 [-Wstringop-truncation]
  103 |     strncpy(atom->name, buffer, sizeof(atom->name));
      |     ^
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp: In function ‘void* open_uhbd_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp:90:22: warning: variable ‘o’ set but not used [-Wunused-but-set-variable]
   90 |   float orig[3], ra, o[3], s[3]; //xdelta[3], ydelta[3], zdelta[3];
      |                      ^
contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp:90:28: warning: variable ‘s’ set but not used [-Wunused-but-set-variable]
   90 |   float orig[3], ra, o[3], s[3]; //xdelta[3], ydelta[3], zdelta[3];
      |                            ^
contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp: In function ‘int read_uhbd_data(void*, int, float*, float*)’:
contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp:254:66: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  254 |       if (fread(datablock + z*xysize, sizeof(float), xysize, fd) != xysize) {
      |           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp: In function ‘void* open_uhbd_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp:102:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  102 |   fread(&headersize, sizeof(int), 1, fd);
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp:47:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h: At global scope:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: ‘void swap8_aligned(void*, long int)’ defined but not used [-Wunused-function]
  124 | static void swap8_aligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: ‘void swap2_aligned(void*, long int)’ defined but not used [-Wunused-function]
   96 | static void swap2_aligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: ‘void swap8_unaligned(void*, long int)’ defined but not used [-Wunused-function]
   65 | static void swap8_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘void swap2_unaligned(void*, long int)’ defined but not used [-Wunused-function]
   32 | static void swap2_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘get_contrl’:
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1981:3: warning: ‘strncpy’ specified bound 8192 equals destination size [-Wstringop-truncation]
 1981 |   strncpy(data->geometry, trimright(temp+7), sizeof(data->geometry));
      |   ^
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘get_contrl_firefly’:
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1818:3: warning: ‘strncpy’ specified bound 8192 equals destination size [-Wstringop-truncation]
 1818 |   strncpy(data->geometry, trimright(temp+7), sizeof(data->geometry));
      |   ^
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘get_basis_options’:
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1422:5: warning: ‘__strncat_chk’ output may be truncated copying 1 byte from a string of length 9 [-Wstringop-truncation]
 1422 |     strncat(data->basis_string, &data->gbasis[3], 1);
      |     ^
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1411:5: warning: ‘__strncat_chk’ output may be truncated copying 1 byte from a string of length 9 [-Wstringop-truncation]
 1411 |     strncat(data->basis_string, &data->gbasis[2], 1);
      |     ^
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘get_proc_mem.isra.0’:
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1279:5: warning: ‘strncpy’ output may be truncated copying 256 bytes from a string of length 8191 [-Wstringop-truncation]
 1279 |     strncpy(data->memory,&word[2][0],sizeof(data->memory));
      |     ^
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1272:5: warning: ‘strncpy’ specified bound 256 equals destination size [-Wstringop-truncation]
 1272 |     strncpy(data->memory,trimright(temp),sizeof(data->memory));
      |     ^
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c: In function ‘read_vasp5xdatcar_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:224:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  224 |     fgets(lineptr, LINESIZE, data->file);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c: In function ‘read_vasp5xdatcar_structure’:
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:174:27: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  174 |   for (i = 0; i < 2; ++i) fgets(lineptr, LINESIZE, data->file);
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:180:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  180 |     fgets(lineptr, LINESIZE, data->file);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:189:26: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  189 |  for (i = 0; i < 3; ++i) fgets(lineptr, LINESIZE, data->file);
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:194:4: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  194 |    fgets(lineptr, LINESIZE, data->file);
      |    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:204:26: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  204 |  for (i = 0; i < 8; ++i) fgets(lineptr, LINESIZE, data->file);
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c: In function ‘open_vasp5xdatcar_read’:
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:69:27: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   69 |   for (i = 0; i < 5; ++i) fgets(lineptr, LINESIZE, data->file);
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:72:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   72 |   fgets(lineptr, LINESIZE, data->file);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:77:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   77 |   fgets(lineptr, LINESIZE, data->file);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:40:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h: At top level:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: ‘get_pte_idx_from_string’ defined but not used [-Wunused-function]
  160 | static int get_pte_idx_from_string(const char *label) {
      |            ^~~~~~~~~~~~~~~~~~~~~~~
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘get_input_structure’:
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1682:5: warning: ‘strncpy’ output may be truncated copying 11 bytes from a string of length 8191 [-Wstringop-truncation]
 1682 |     strncpy(atm->type, atname, sizeof(atm->type));
      |     ^
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c: In function ‘read_vaspchgcar_data’:
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:237:60: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  237 |   for (n = 0; n < data->numatoms + data->version + 5; ++n) fgets(lineptr, LINESIZE, data->file);
      |                                                            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:282:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  282 |       fgets(lineptr, LINESIZE, data->file);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c: In function ‘read_vaspchgcar_metadata’:
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:150:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  150 |   fgets(lineptr, LINESIZE, data->file);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c: In function ‘open_vaspchgcar_read’:
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:71:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   71 |   fgets(lineptr, LINESIZE, data->file);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:75:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   75 |   fgets(lineptr, LINESIZE, data->file);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:81:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   81 |     fgets(lineptr, LINESIZE, data->file);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:92:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   92 |   fgets(lineptr, LINESIZE, data->file);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:103:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  103 |       fgets(lineptr, LINESIZE, data->file);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:131:44: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  131 |   for (i = 0; i < data->numatoms + 2; ++i) fgets(lineptr, LINESIZE, data->file);
      |                                            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:41:
contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h: At top level:
contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h:111:13: warning: ‘vasp_timestep_unitcell’ defined but not used [-Wunused-function]
  111 | static void vasp_timestep_unitcell(molfile_timestep_t *ts, vasp_plugindata_t *data)
      |             ^~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function ‘get_traj_frame.isra.0’:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:819:5: warning: ‘strncpy’ output may be truncated copying 10 bytes from a string of length 10 [-Wstringop-truncation]
  819 |     strncpy((*atoms)[i].type, (*atoms)[indexmap[i]].type, 10);
      |     ^
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c: In function ‘read_vaspoutcar_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:239:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  239 |       fgets(lineptr, LINESIZE, data->file);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:242:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  242 |         fgets(lineptr, LINESIZE, data->file);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c: In function ‘read_vaspoutcar_structure’:
contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:204:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  204 |         fgets(lineptr, LINESIZE, data->file);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c: In function ‘open_vaspoutcar_read’:
contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:87:10: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   87 |          fgets(lineptr, LINESIZE, data->file);
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:40:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h: At top level:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: ‘get_pte_idx_from_string’ defined but not used [-Wunused-function]
  160 | static int get_pte_idx_from_string(const char *label) {
      |            ^~~~~~~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c: In function ‘read_vaspparchg_data’:
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:238:60: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  238 |   for (n = 0; n < data->numatoms + data->version + 5; ++n) fgets(lineptr, LINESIZE, data->file);
      |                                                            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c: In function ‘read_vaspparchg_metadata’:
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp: In function ‘void line3(FILE*, GRASSP*)’:
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:186:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  186 |   fread(line3, 1, 80, infile);
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:150:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  150 |   fgets(lineptr, LINESIZE, data->file);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp: In function ‘int read_rawgraphics(void*, int*, const molfile_graphics_t**)’:
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  280 | #define TRASH fread(trash, 4, 1, infile)
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:284:3: note: in expansion of macro ‘TRASH’
  284 |   TRASH;
      |   ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:285:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  285 |   fread(line, 1, 80, infile);
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  280 | #define TRASH fread(trash, 4, 1, infile)
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:291:3: note: in expansion of macro ‘TRASH’
  291 |   TRASH;
      |   ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  280 | #define TRASH fread(trash, 4, 1, infile)
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:305:3: note: in expansion of macro ‘TRASH’
  305 |   TRASH;
      |   ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:306:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  306 |   fread(line, 1, 80, infile);
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  280 | #define TRASH fread(trash, 4, 1, infile)
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:307:3: note: in expansion of macro ‘TRASH’
  307 |   TRASH;
      |   ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  280 | #define TRASH fread(trash, 4, 1, infile)
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:311:3: note: in expansion of macro ‘TRASH’
  311 |   TRASH;
      |   ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  280 | #define TRASH fread(trash, 4, 1, infile)
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:313:3: note: in expansion of macro ‘TRASH’
  313 |   TRASH;
      |   ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  280 | #define TRASH fread(trash, 4, 1, infile)
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:318:3: note: in expansion of macro ‘TRASH’
  318 |   TRASH;
      |   ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:319:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  319 |   fread(line, 1, 80, infile);
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  280 | #define TRASH fread(trash, 4, 1, infile)
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:320:3: note: in expansion of macro ‘TRASH’
  320 |   TRASH;
      |   ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  280 | #define TRASH fread(trash, 4, 1, infile)
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:328:3: note: in expansion of macro ‘TRASH’
  328 |   TRASH;
      |   ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:329:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  329 |   fread(line, 1, 80, infile);
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  280 | #define TRASH fread(trash, 4, 1, infile)
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:330:3: note: in expansion of macro ‘TRASH’
  330 |   TRASH;
      |   ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  280 | #define TRASH fread(trash, 4, 1, infile)
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:354:3: note: in expansion of macro ‘TRASH’
  354 |   TRASH;
      |   ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:355:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  355 |   fread(vertex, 3 * sizeof(float), nvert, infile);
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  280 | #define TRASH fread(trash, 4, 1, infile)
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:356:3: note: in expansion of macro ‘TRASH’
  356 |   TRASH;
      |   ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  280 | #define TRASH fread(trash, 4, 1, infile)
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:357:3: note: in expansion of macro ‘TRASH’
  357 |   TRASH;
      |   ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:358:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  358 |   fread(access, 3 * sizeof(float), nvert, infile);
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  280 | #define TRASH fread(trash, 4, 1, infile)
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:359:3: note: in expansion of macro ‘TRASH’
  359 |   TRASH;
      |   ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  280 | #define TRASH fread(trash, 4, 1, infile)
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:360:3: note: in expansion of macro ‘TRASH’
  360 |   TRASH;
      |   ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:361:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  361 |   fread(normal, 3 * sizeof(float), nvert, infile);
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  280 | #define TRASH fread(trash, 4, 1, infile)
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:362:3: note: in expansion of macro ‘TRASH’
  362 |   TRASH;
      |   ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  280 | #define TRASH fread(trash, 4, 1, infile)
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:371:5: note: in expansion of macro ‘TRASH’
  371 |     TRASH;
      |     ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:372:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  372 |     fread(triangle, 3 * sizeof(int), ntriangles, infile);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  280 | #define TRASH fread(trash, 4, 1, infile)
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:373:5: note: in expansion of macro ‘TRASH’
  373 |     TRASH;
      |     ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  280 | #define TRASH fread(trash, 4, 1, infile)
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:374:5: note: in expansion of macro ‘TRASH’
  374 |     TRASH;
      |     ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:375:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  375 |     fread(properties, 3 * sizeof(float), nvert, infile);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  280 | #define TRASH fread(trash, 4, 1, infile)
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:394:5: note: in expansion of macro ‘TRASH’
  394 |     TRASH;
      |     ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:395:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  395 |     fread(striangle, sizeof(short), 3 * ntriangles, infile);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  280 | #define TRASH fread(trash, 4, 1, infile)
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:396:5: note: in expansion of macro ‘TRASH’
  396 |     TRASH;
      |     ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  280 | #define TRASH fread(trash, 4, 1, infile)
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:397:5: note: in expansion of macro ‘TRASH’
  397 |     TRASH;
      |     ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:398:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  398 |     fread(properties, sizeof(float), 3 * nvert, infile);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:40:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h: At global scope:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: ‘void swap8_aligned(void*, long int)’ defined but not used [-Wunused-function]
  124 | static void swap8_aligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: ‘void swap8_unaligned(void*, long int)’ defined but not used [-Wunused-function]
   65 | static void swap8_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: ‘void swap4_unaligned(void*, long int)’ defined but not used [-Wunused-function]
   46 | static void swap4_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘void swap2_unaligned(void*, long int)’ defined but not used [-Wunused-function]
   32 | static void swap2_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c: In function ‘open_vaspparchg_read’:
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:71:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   71 |   fgets(lineptr, LINESIZE, data->file);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:75:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   75 |   fgets(lineptr, LINESIZE, data->file);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:81:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   81 |     fgets(lineptr, LINESIZE, data->file);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:92:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   92 |   fgets(lineptr, LINESIZE, data->file);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:103:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  103 |       fgets(lineptr, LINESIZE, data->file);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:131:44: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  131 |   for (i = 0; i < data->numatoms + 2; ++i) fgets(lineptr, LINESIZE, data->file);
      |                                            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:41:
contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h: At top level:
contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h:111:13: warning: ‘vasp_timestep_unitcell’ defined but not used [-Wunused-function]
  111 | static void vasp_timestep_unitcell(molfile_timestep_t *ts, vasp_plugindata_t *data)
      |             ^~~~~~~~~~~~~~~~~~~~~~
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/grdplugin.cpp -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/grdplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function ‘write_vaspposcar_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:360:40: warning: argument to ‘sizeof’ in ‘strncpy’ call is the same expression as the source; did you mean to use the size of the destination? [-Wsizeof-pointer-memaccess]
  360 |     strncpy(tmptype, atom->type, sizeof(atom->type));
      |                                        ^
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function ‘read_vaspposcar_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:232:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  232 |   fgets(lineptr, LINESIZE, data->file);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:237:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  237 |     fgets(lineptr, LINESIZE, data->file);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:246:43: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  246 |   for (i = 0; i < data->version - 2; ++i) fgets(lineptr, LINESIZE, data->file);
      |                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:249:35: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  249 |   if (tolower(lineptr[0]) == 's') fgets(lineptr, LINESIZE, data->file);
      |                                   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:256:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  256 |     fgets(lineptr, LINESIZE, data->file);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function ‘read_vaspposcar_structure’:
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:195:42: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  195 |  for (i = 0; i < data->version + 3; ++i) fgets(lineptr, LINESIZE, data->file);
      |                                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:198:34: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  198 |  if (tolower(lineptr[0]) == 's') fgets(lineptr, LINESIZE, data->file);
      |                                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:203:4: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  203 |    fgets(lineptr, LINESIZE, data->file);
      |    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function ‘open_vaspposcar_read’:
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:69:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   69 |   fgets(lineptr, LINESIZE, data->file);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:73:27: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   73 |   for (i = 0; i < 5; ++i) fgets(lineptr, LINESIZE, data->file);
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:87:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   87 |       fgets(lineptr, LINESIZE, data->file);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:40:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h: At top level:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: ‘get_pte_idx_from_string’ defined but not used [-Wunused-function]
  160 | static int get_pte_idx_from_string(const char *label) {
      |            ^~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/grdplugin.cpp:51:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: ‘void swap8_aligned(void*, long int)’ defined but not used [-Wunused-function]
  124 | static void swap8_aligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: ‘void swap2_aligned(void*, long int)’ defined but not used [-Wunused-function]
   96 | static void swap2_aligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: ‘void swap8_unaligned(void*, long int)’ defined but not used [-Wunused-function]
   65 | static void swap8_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: ‘void swap4_unaligned(void*, long int)’ defined but not used [-Wunused-function]
   46 | static void swap4_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘void swap2_unaligned(void*, long int)’ defined but not used [-Wunused-function]
   32 | static void swap2_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/gridplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp: In function ‘void* open_grid_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp:84:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   84 |   fread(&dataBegin, sizeof(int), 1, fd);
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp:60:
contrib/uiuc/plugins/molfile_plugin/src/fortread.h: At global scope:
contrib/uiuc/plugins/molfile_plugin/src/fortread.h:133:13: warning: ‘void strnwscpy(char*, const char*, int)’ defined but not used [-Wunused-function]
  133 | static void strnwscpy(char *target, const char *source, const int len) {
      |             ^~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/fortread.h:55:12: warning: ‘int fort_get_endian_reclen(int, int, int, int*, int*)’ defined but not used [-Wunused-function]
   55 | static int fort_get_endian_reclen(int reclen, int word0, int word1,
      |            ^~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/fortread.h:36:12: warning: ‘int fort_eat_recmark(FILE*, int)’ defined but not used [-Wunused-function]
   36 | static int fort_eat_recmark(FILE *ifp, int recmarklen) {
      |            ^~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp:59:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: ‘void swap8_aligned(void*, long int)’ defined but not used [-Wunused-function]
  124 | static void swap8_aligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: ‘void swap2_aligned(void*, long int)’ defined but not used [-Wunused-function]
   96 | static void swap2_aligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: ‘void swap8_unaligned(void*, long int)’ defined but not used [-Wunused-function]
   65 | static void swap8_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: ‘void swap4_unaligned(void*, long int)’ defined but not used [-Wunused-function]
   46 | static void swap4_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘void swap2_unaligned(void*, long int)’ defined but not used [-Wunused-function]
   32 | static void swap2_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c: In function ‘read_vaspxdatcar_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:283:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  283 |   fgets(lineptr, LINESIZE, data->file);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c: In function ‘read_vaspxdatcar_structure’:
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:228:27: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  228 |   for (i = 0; i < 4; ++i) fgets(lineptr, LINESIZE, data->file);
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:233:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  233 |     fgets(lineptr, LINESIZE, data->file);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:237:32: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  237 |       for (i = 0; i < 2; ++i)  fgets(lineptr, LINESIZE, data->file);
      |                                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:252:44: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  252 |   for (i = 0; i < 10 - data->version; ++i) fgets(lineptr, LINESIZE, data->file);
      |                                            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c: In function ‘open_vaspxdatcar_read’:
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:89:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   89 |   fgets(lineptr, LINESIZE, poscar);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:92:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   92 |   fgets(lineptr, LINESIZE, poscar);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:97:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   97 |     fgets(lineptr, LINESIZE, poscar);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:111:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  111 |   fgets(lineptr, LINESIZE, poscar);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:121:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  121 |       fgets(lineptr, LINESIZE, poscar);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:40:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h: At top level:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: ‘get_pte_idx_from_string’ defined but not used [-Wunused-function]
  160 | static int get_pte_idx_from_string(const char *label) {
      |            ^~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp:30:
contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h: In function ‘int mdio_readline(md_file*, char*, int, int)’:
contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h:426:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  426 |         fgets(buf, n, mf->f);
      |         ~~~~~^~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h:48:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h: At global scope:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: ‘void swap2_aligned(void*, long int)’ defined but not used [-Wunused-function]
   96 | static void swap2_aligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: ‘void swap8_unaligned(void*, long int)’ defined but not used [-Wunused-function]
   65 | static void swap8_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: ‘void swap4_unaligned(void*, long int)’ defined but not used [-Wunused-function]
   46 | static void swap4_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘void swap2_unaligned(void*, long int)’ defined but not used [-Wunused-function]
   32 | static void swap2_unaligned(void *v, long ndata) {
      |             ^~~~~~~~~~~~~~~
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c: In function ‘read_vaspxml_structure’:
contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:139:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  139 |       fgets(lineptr, LINESIZE, data->file);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:144:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  144 |         fgets(lineptr, LINESIZE, data->file);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c: In function ‘open_vaspxml_read’:
contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:86:8: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   86 |        fgets(lineptr, LINESIZE, data->file);
      |        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:92:8: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   92 |        fgets(lineptr, LINESIZE, data->file);
      |        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:47:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h: At top level:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: ‘get_pte_idx_from_string’ defined but not used [-Wunused-function]
  160 | static int get_pte_idx_from_string(const char *label) {
      |            ^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h: In function ‘g96_header(md_file*, char*, int, float*) [clone .constprop.0]’:
contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h:650:39: warning: ‘strncpy’ output may be truncated copying 80 bytes from a string of length 500 [-Wstringop-truncation]
  650 |         if (title && titlelen) strncpy(title, buf, titlelen);
      |                                       ^
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp: In function ‘open_gro_read(char const*, char const*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp:103:12: warning: ‘strncpy’ output may be truncated copying 80 bytes from a string of length 80 [-Wstringop-truncation]
  103 |     strncpy(gmx->meta->title, mdh.title, 80);
      |            ^
contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c: In function ‘vtf_open_file_read’:
contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:538:9: warning: ‘__strncat_chk’ output may be truncated copying 200 bytes from a string of length 254 [-Wstringop-truncation]
  538 |         strncat(msg, keyword, 200);
      |         ^
contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:629:7: warning: ‘__strncat_chk’ output may be truncated copying 200 bytes from a string of length 254 [-Wstringop-truncation]
  629 |       strncat(msg, keyword, 200);
      |       ^
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/hash.c -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/hash.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c: In function ‘vtf_read_bonds’:
contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:147:48: warning: ‘%s’ directive argument is null [-Wformat-overflow=]
  147 |   sprintf(message, "vtfplugin:%d: error: %s: \"%s\"\n",
      |                                                ^~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/inthash.c -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/inthash.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp: In function ‘int read_vtk_data(void*, int, float*, float*)’:
contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp:276:45: warning: variable ‘total’ set but not used [-Wunused-but-set-variable]
  276 |   int x, y, z, xsize, ysize, zsize, xysize, total;
      |                                             ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp: In function ‘int read_vtk_data_ex(void*, molfile_volumetric_readwrite_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp:338:45: warning: variable ‘total’ set but not used [-Wunused-but-set-variable]
  338 |   int x, y, z, xsize, ysize, zsize, xysize, total;
      |                                             ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp:371:15: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  371 |         fscanf(fd, "%lf %lf %lf", &vx, &vy, &vz);
      |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp: In function ‘int read_vtk_data(void*, int, float*, float*)’:
contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp:306:15: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  306 |         fscanf(fd, "%lf %lf %lf", &vx, &vy, &vz);
      |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp:72:
contrib/uiuc/plugins/include/vmdconio.h: At global scope:
contrib/uiuc/plugins/include/vmdconio.h:56:12: warning: ‘int vmdcon_printf(int, const char*, ...)’ defined but not used [-Wunused-function]
   56 | static int vmdcon_printf(int lvl, const char *fmt, ...) {
      |            ^~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Parse.cpp -o build/temp.linux-x86_64-cpython-311/layer0/Parse.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function ‘int read_xbgf_timestep(void*, int, molfile_timestep_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:288:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  288 |     fgets(line, LINESIZE, bgf->file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:297:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  297 |     fgets(line, LINESIZE, bgf->file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function ‘int read_xbgf_bonds_aux(void*, int*, int**, int**, float**)’:
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:365:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  365 |     fgets(line, LINESIZE, bgf->file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:387:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  387 |   fgets(line, LINESIZE, bgf->file);
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:395:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  395 |     fgets(nextline, LINESIZE, bgf->file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:455:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  455 |         fgets(line, LINESIZE, bgf->file);
      |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function ‘int read_xbgf_structure(void*, int*, molfile_atom_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:241:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  241 |     fgets(line, LINESIZE, bgf->file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:250:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  250 |     fgets(line, LINESIZE, bgf->file);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function ‘void* open_xbgf_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:72:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   72 |     fgets(line, LINESIZE, fd);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Pixmap.cpp -o build/temp.linux-x86_64-cpython-311/layer0/Pixmap.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function ‘read_xbgf_timestep(void*, int, molfile_timestep_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:143:12: warning: ‘strncpy’ output may be truncated copying 10 bytes from a string of length 223 [-Wstringop-truncation]
  143 |     strncpy(numstr, record + 32, 10);
      |            ^
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:148:12: warning: ‘strncpy’ output may be truncated copying 10 bytes from a string of length 213 [-Wstringop-truncation]
  148 |     strncpy(numstr+10, record + 42, 10);
      |            ^
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:153:12: warning: ‘strncpy’ output may be truncated copying 10 bytes from a string of length 203 [-Wstringop-truncation]
  153 |     strncpy(numstr+20, record + 52, 10);
      |            ^
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function ‘read_xbgf_structure(void*, int*, molfile_atom_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:172:10: warning: ‘strncpy’ output may be truncated copying 5 bytes from a string of length 241 [-Wstringop-truncation]
  172 |   strncpy(name, record + 14, 5);
      |          ^
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:177:10: warning: ‘strncpy’ output may be truncated copying 4 bytes from a string of length 235 [-Wstringop-truncation]
  177 |   strncpy(resname, record + 20, 4);
      |          ^
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:182:10: warning: ‘strncpy’ output may be truncated copying 4 bytes from a string of length 154 [-Wstringop-truncation]
  182 |   strncpy(segname, record + 101, 4);
      |          ^
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:197:10: warning: ‘strncpy’ output may be truncated copying 5 bytes from a string of length 192 [-Wstringop-truncation]
  197 |   strncpy(type, record+63, 5);
      |          ^
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp: In function ‘void eatline(FILE*)’:
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:238:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  238 |   fgets(readbuf, 1024, fd);    // go on to next line
      |   ~~~~~^~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp: In function ‘void* open_xsf_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:408:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  408 |         fgets(readbuf, 256, xsf->fd);
      |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:442:20: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  442 |               fgets(readbuf, 256, xsf->fd);
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:444:20: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  444 |               fgets(readbuf, 256, xsf->fd);
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/PostProcess.cpp -o build/temp.linux-x86_64-cpython-311/layer0/PostProcess.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:446:20: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  446 |               fgets(readbuf, 256, xsf->fd);
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:448:20: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  448 |               fgets(readbuf, 256, xsf->fd);
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:450:20: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  450 |               fgets(readbuf, 256, xsf->fd);
      |               ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:473:22: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  473 |                 fgets(readbuf, 256, xsf->fd);
      |                 ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:508:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  508 |           fgets(readbuf, 256, xsf->fd);
      |           ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:37:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h: At global scope:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: ‘int get_pte_idx_from_string(const char*)’ defined but not used [-Wunused-function]
  160 | static int get_pte_idx_from_string(const char *label) {
      |            ^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp: In function ‘read_xsf_structure(void*, int*, molfile_atom_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:597:20: warning: ‘strncpy’ output may be truncated copying 16 bytes from a string of length 1023 [-Wstringop-truncation]
  597 |             strncpy(atom->name, buffer, sizeof(atom->name));
      |                    ^
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp: In function ‘open_xsf_read(char const*, char const*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:438:22: warning: ‘strncpy’ output may be truncated copying 255 bytes from a string of length 255 [-Wstringop-truncation]
  438 |               strncpy(set->dataname, readbuf, 255);
      |                      ^
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c -o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In file included from contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c:57:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: ‘get_pte_idx_from_string’ defined but not used [-Wunused-function]
  160 | static int get_pte_idx_from_string(const char *label) {
      |            ^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c: In function ‘read_xyz_structure’:
contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c:133:7: warning: ‘strncpy’ output may be truncated copying 16 bytes from a string of length 1023 [-Wstringop-truncation]
  133 |       strncpy(atom->name, buffer, sizeof(atom->name));
      |       ^
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Block.cpp -o build/temp.linux-x86_64-cpython-311/layer0/Block.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/ShaderMgr.cpp -o build/temp.linux-x86_64-cpython-311/layer0/ShaderMgr.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/CarveHelper.cpp -o build/temp.linux-x86_64-cpython-311/layer0/CarveHelper.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In file included from layer0/CarveHelper.cpp:8:
layer0/CarveHelper.h: In constructor ‘CarveHelper::CarveHelper(PyMOLGlobals*, float, const float*, std::size_t)’:
layer0/CarveHelper.h:23:9: warning: ‘CarveHelper::m_cutoff’ will be initialized after [-Wreorder]
   23 |   float m_cutoff;
      |         ^~~~~~~~
layer0/CarveHelper.h:22:16: warning:   ‘const float* CarveHelper::m_vertices’ [-Wreorder]
   22 |   const float* m_vertices;
      |                ^~~~~~~~~~
layer0/CarveHelper.cpp:20:1: warning:   when initialized here [-Wreorder]
   20 | CarveHelper::CarveHelper(PyMOLGlobals* G, float cutoff, const float* vertices,
      | ^~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/ContourSurf.cpp -o build/temp.linux-x86_64-cpython-311/layer0/ContourSurf.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In file included from /usr/include/c++/13/cassert:44,
                 from layer0/Field.h:24,
                 from layer0/Isosurf.h:24,
                 from layer0/ContourSurf.cpp:11:
layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = float; SizeTs = {long unsigned int, long unsigned int, long unsigned int}]’:
layer0/Field.h:114:19:   required from ‘T& CField::get(SizeTs ...) [with T = float; SizeTs = {long unsigned int, long unsigned int, long unsigned int}]’
layer0/ContourSurf.cpp:409:37:   required from here
layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare]
  100 |     assert(sizeof...(pos) <= n_dim());
      |            ~~~~~~~~~~~~~~~^~~~~~~~~~
layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = float; SizeTs = {long unsigned int, long unsigned int, long unsigned int, int}]’:
layer0/Field.h:114:19:   required from ‘T& CField::get(SizeTs ...) [with T = float; SizeTs = {long unsigned int, long unsigned int, long unsigned int, int}]’
layer0/ContourSurf.cpp:419:36:   required from here
layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare]
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Crystal.cpp -o build/temp.linux-x86_64-cpython-311/layer0/Crystal.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Deferred.cpp -o build/temp.linux-x86_64-cpython-311/layer0/Deferred.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Err.cpp -o build/temp.linux-x86_64-cpython-311/layer0/Err.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Feedback.cpp -o build/temp.linux-x86_64-cpython-311/layer0/Feedback.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Field.cpp -o build/temp.linux-x86_64-cpython-311/layer0/Field.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer0/Field.cpp: In function ‘PyObject* FieldAsNumPyArray(CField*, short int)’:
layer0/Field.cpp:83:1: warning: label ‘ok_except1’ defined but not used [-Wunused-label]
   83 | ok_except1:
      | ^~~~~~~~~~
layer0/Field.cpp: In function ‘CField* FieldNewFromPyList(PyMOLGlobals*, PyObject*)’:
layer0/Field.cpp:179:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  179 |   ok = ok && I->size() == size;
      |              ~~~~~~~~~~^~~~~~~
In file included from /usr/include/c++/13/cassert:44,
                 from layer0/Field.h:24,
                 from layer0/Field.cpp:26:
layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = float; SizeTs = {int, int, int}]’:
layer0/Field.h:114:19:   required from ‘T& CField::get(SizeTs ...) [with T = float; SizeTs = {int, int, int}]’
layer0/Field.cpp:343:17:   required from here
layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare]
  100 |     assert(sizeof...(pos) <= n_dim());
      |            ~~~~~~~~~~~~~~~^~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/File.cpp -o build/temp.linux-x86_64-cpython-311/layer0/File.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/GenericBuffer.cpp -o build/temp.linux-x86_64-cpython-311/layer0/GenericBuffer.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/ShaderPrg.cpp -o build/temp.linux-x86_64-cpython-311/layer0/ShaderPrg.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/GraphicsUtil.cpp -o build/temp.linux-x86_64-cpython-311/layer0/GraphicsUtil.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Isosurf.cpp -o build/temp.linux-x86_64-cpython-311/layer0/Isosurf.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Sphere.cpp -o build/temp.linux-x86_64-cpython-311/layer0/Sphere.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Tetsurf.cpp -o build/temp.linux-x86_64-cpython-311/layer0/Tetsurf.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In file included from /usr/include/c++/13/cassert:44,
                 from layer0/Field.h:24,
                 from layer0/Isosurf.h:24,
                 from layer0/Isosurf.cpp:25:
layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = float; SizeTs = {int, int, int, int}]’:
layer0/Isosurf.cpp:552:24:   required from here
layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare]
  100 |     assert(sizeof...(pos) <= n_dim());
      |            ~~~~~~~~~~~~~~~^~~~~~~~~~
layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = float; SizeTs = {int, int, int}]’:
layer0/Isosurf.cpp:1459:32:   required from here
layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare]
layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = PointType; SizeTs = {int, int, int, int}]’:
layer0/Field.h:134:26:   required from ‘T* CFieldTyped<T>::ptr(SizeTs ...) [with SizeTs = {int, int, int, int}; T = PointType]’
layer0/Isosurf.cpp:1617:19:   required from here
layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare]
layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = int; SizeTs = {int, int, int}]’:
layer0/Field.h:114:19:   required from ‘T& CField::get(SizeTs ...) [with T = int; SizeTs = {int, int, int}]’
layer0/Field.h:144:26:   required from ‘T& CFieldTyped<T>::get(SizeTs ...) [with SizeTs = {int, int, int}; T = int]’
layer0/Isosurf.cpp:1456:15:   required from here
layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare]
layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = int; SizeTs = {int, int, int, int}]’:
layer0/Field.h:114:19:   required from ‘T& CField::get(SizeTs ...) [with T = int; SizeTs = {int, int, int, int}]’
layer0/Field.h:144:26:   required from ‘T& CFieldTyped<T>::get(SizeTs ...) [with SizeTs = {int, int, int, int}; T = int]’
layer0/Isosurf.cpp:1487:13:   required from here
layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare]
In file included from /usr/include/c++/13/cassert:44,
                 from layer0/Field.h:24,
                 from layer0/Isosurf.h:24,
                 from layer0/Tetsurf.cpp:24:
layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = float; SizeTs = {int, int, int, int}]’:
layer0/Tetsurf.cpp:802:18:   required from here
layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare]
  100 |     assert(sizeof...(pos) <= n_dim());
      |            ~~~~~~~~~~~~~~~^~~~~~~~~~
layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = PointType; SizeTs = {int, int, int, int}]’:
layer0/Tetsurf.cpp:831:27:   required from here
layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare]
layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = int; SizeTs = {int, int, int}]’:
layer0/Field.h:114:19:   required from ‘T& CField::get(SizeTs ...) [with T = int; SizeTs = {int, int, int}]’
layer0/Tetsurf.cpp:791:16:   required from here
layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare]
layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = float; SizeTs = {int, int, int}]’:
layer0/Field.h:114:19:   required from ‘T& CField::get(SizeTs ...) [with T = float; SizeTs = {int, int, int}]’
layer0/Tetsurf.cpp:822:18:   required from here
layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare]
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Texture.cpp -o build/temp.linux-x86_64-cpython-311/layer0/Texture.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Map.cpp -o build/temp.linux-x86_64-cpython-311/layer0/Map.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Tracker.cpp -o build/temp.linux-x86_64-cpython-311/layer0/Tracker.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Match.cpp -o build/temp.linux-x86_64-cpython-311/layer0/Match.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Triangle.cpp -o build/temp.linux-x86_64-cpython-311/layer0/Triangle.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Matrix.cpp -o build/temp.linux-x86_64-cpython-311/layer0/Matrix.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Util.cpp -o build/temp.linux-x86_64-cpython-311/layer0/Util.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/MemoryDebug.cpp -o build/temp.linux-x86_64-cpython-311/layer0/MemoryDebug.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer0/MemoryDebug.cpp: In function ‘void* VLADeleteRaw(void*, int, unsigned int)’:
layer0/MemoryDebug.cpp:223:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘ov_size’ {aka ‘long unsigned int’} [-Wsign-compare]
  223 |       if(index < -old_size)
      |          ~~~~~~^~~~~~~~~~~
layer0/MemoryDebug.cpp:235:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘ov_size’ {aka ‘long unsigned int’} [-Wsign-compare]
  235 |        (index < vla->size) && ((count + index) <= vla->size)) {
      |         ~~~~~~^~~~~~~~~~~
layer0/MemoryDebug.cpp: In function ‘void* VLAInsertRaw(void*, int, unsigned int)’:
layer0/MemoryDebug.cpp:256:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘ov_size’ {aka ‘long unsigned int’} [-Wsign-compare]
  256 |       if(index < -old_size)
      |          ~~~~~~^~~~~~~~~~~
layer0/MemoryDebug.cpp:263:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘ov_size’ {aka ‘long unsigned int’} [-Wsign-compare]
  263 |     if(index > old_size)
      |        ~~~~~~^~~~~~~~~~
layer0/MemoryDebug.cpp:266:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘ov_size’ {aka ‘long unsigned int’} [-Wsign-compare]
  266 |     if((index >= 0) && (count > 0) && (index <= old_size)) {
      |                                        ~~~~~~^~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/MemoryUsage.cpp -o build/temp.linux-x86_64-cpython-311/layer0/MemoryUsage.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Util2.cpp -o build/temp.linux-x86_64-cpython-311/layer0/Util2.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer0/MemoryUsage.cpp: In function ‘size_t pymol::memory_usage()’:
layer0/MemoryUsage.cpp:38:21: warning: use of assignment suppression and length modifier together in gnu_scanf format [-Wformat=]
   38 |     std::fscanf(fp, "%*zu%zu", &vmRSS);
      |                     ^~~~~~~~~
layer0/MemoryUsage.cpp:38:16: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   38 |     std::fscanf(fp, "%*zu%zu", &vmRSS);
      |     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/MyPNG.cpp -o build/temp.linux-x86_64-cpython-311/layer0/MyPNG.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer0/MyPNG.cpp: In function ‘int MyPNGWrite(const char*, const pymol::Image&, float, int, int, float, float, png_outbuf_t*)’:
layer0/MyPNG.cpp:299:20: warning: comparison of integer expressions of different signedness: ‘png_uint_32’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
  299 |       for(k = 0; k < height; k++)
      |                  ~~^~~~~~~~
layer0/MyPNG.cpp:340:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  340 |           for(b = 0; b < height; b++) {
      |                      ~~^~~~~~~~
layer0/MyPNG.cpp:341:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  341 |             for(a = 0; a < width; a++) {
      |                        ~~^~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Vector.cpp -o build/temp.linux-x86_64-cpython-311/layer0/Vector.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/FontGLUTHel10.cpp -o build/temp.linux-x86_64-cpython-311/layer1/FontGLUTHel10.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/FontGLUTHel12.cpp -o build/temp.linux-x86_64-cpython-311/layer1/FontGLUTHel12.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/FontGLUTHel18.cpp -o build/temp.linux-x86_64-cpython-311/layer1/FontGLUTHel18.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/Word.cpp -o build/temp.linux-x86_64-cpython-311/layer0/Word.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/FontType.cpp -o build/temp.linux-x86_64-cpython-311/layer1/FontType.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/ccealignmodule.cpp -o build/temp.linux-x86_64-cpython-311/layer0/ccealignmodule.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In file included from include/tnt/tnt.h:49,
                 from layer0/ccealignmodule.cpp:39:
include/tnt/tnt_array2d_utils.h: In function ‘std::istream& TNT::operator>>(std::istream&, Array2D<T>&)’:
include/tnt/tnt_array2d_utils.h:62:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
   62 |     for (int i=0; i<M; i++)
      |     ^~~
include/tnt/tnt_array2d_utils.h:68:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
   68 |         A = B;
      |         ^
In file included from include/tnt/tnt.h:50:
include/tnt/tnt_array3d_utils.h: In function ‘std::istream& TNT::operator>>(std::istream&, Array3D<T>&)’:
include/tnt/tnt_array3d_utils.h:47:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
   47 |     for (int i=0; i<M; i++)
      |     ^~~
include/tnt/tnt_array3d_utils.h:52:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
   52 |         A = B;
      |         ^
In file included from include/tnt/tnt.h:56:
include/tnt/tnt_fortran_array2d_utils.h: In function ‘std::istream& TNT::operator>>(std::istream&, Fortran_Array2D<T>&)’:
include/tnt/tnt_fortran_array2d_utils.h:61:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
   61 |     for (int i=1; i<=M; i++)
      |     ^~~
include/tnt/tnt_fortran_array2d_utils.h:67:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
   67 |         A = B;
      |         ^
In file included from include/tnt/tnt.h:57:
include/tnt/tnt_fortran_array3d_utils.h: In function ‘std::istream& TNT::operator>>(std::istream&, Fortran_Array3D<T>&)’:
include/tnt/tnt_fortran_array3d_utils.h:65:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
   65 |     for (int i=1; i<=M; i++)
      |     ^~~
include/tnt/tnt_fortran_array3d_utils.h:70:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
   70 |         A = B;
      |         ^
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/Movie.cpp -o build/temp.linux-x86_64-cpython-311/layer1/Movie.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/marching_cubes.cpp -o build/temp.linux-x86_64-cpython-311/layer0/marching_cubes.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer0/marching_cubes.cpp: In function ‘mc::Mesh mc::march(const Field&, float, bool)’:
layer0/marching_cubes.cpp:517:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare]
  517 |   for (int z = 0; z < zDim; ++z) {
      |                   ~~^~~~~~
layer0/marching_cubes.cpp:550:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare]
  550 |   for (int z = 0; z < zEnd; ++z) {
      |                   ~~^~~~~~
layer0/marching_cubes.cpp:603:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
  603 |           if (z == zEnd - 1) {
      |               ~~^~~~~~~~~~~
layer0/marching_cubes.cpp:608:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
  608 |         if (z == zEnd - 1) {
      |             ~~^~~~~~~~~~~
layer0/marching_cubes.cpp: In function ‘void mc::calculateNormals(Mesh&)’:
layer0/marching_cubes.cpp:681:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  681 |   for (int i = 0; i < vertexCount; ++i) {
      |                   ~~^~~~~~~~~~~~~
layer0/marching_cubes.cpp:686:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  686 |   for (int i = 0; i < triangleCount; ++i) {
      |                   ~~^~~~~~~~~~~~~~~
layer0/marching_cubes.cpp:720:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  720 |   for (int i = 0; i < vertexCount; ++i) {
      |                   ~~^~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer0/os_gl.cpp -o build/temp.linux-x86_64-cpython-311/layer0/os_gl.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/Basis.cpp -o build/temp.linux-x86_64-cpython-311/layer1/Basis.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/Ortho.cpp -o build/temp.linux-x86_64-cpython-311/layer1/Ortho.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/ButMode.cpp -o build/temp.linux-x86_64-cpython-311/layer1/ButMode.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer1/Ortho.cpp:783:6: warning: ‘void OrthoKeyCmmd(PyMOLGlobals*, unsigned char)’ defined but not used [-Wunused-function]
  783 | void OrthoKeyCmmd(PyMOLGlobals * G, unsigned char k)
      |      ^~~~~~~~~~~~
In file included from /usr/include/string.h:535,
                 from /usr/include/python3.11/Python.h:26,
                 from layer0/os_python.h:34,
                 from layer1/Ortho.cpp:24:
In function ‘strcat’,
    inlined from ‘OrthoSpecial(PyMOLGlobals*, int, int, int, int)’ at layer1/Ortho.cpp:332:13:
/usr/include/bits/string_fortified.h:130:33: warning: ‘__strcat_chk’ accessing 2199022993409 or more bytes at offsets [80, 261200] and [-2199022993328, 2199023516752] may overlap 1 byte at offset [80, 9223372036854775807] [-Wrestrict]
  130 |   return __builtin___strcat_chk (__dest, __src, __glibc_objsize (__dest));
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘strcat’,
    inlined from ‘OrthoSpecial(PyMOLGlobals*, int, int, int, int)’ at layer1/Ortho.cpp:349:13:
/usr/include/bits/string_fortified.h:130:33: warning: ‘__strcat_chk’ accessing 2199022993409 or more bytes at offsets [80, 261200] and [-2199022993328, 2199023516752] may overlap 1 byte at offset [80, 9223372036854775807] [-Wrestrict]
  130 |   return __builtin___strcat_chk (__dest, __src, __glibc_objsize (__dest));
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer1/ButMode.cpp:22:
layer1/ButMode.cpp: In function ‘void ButModeFree(PyMOLGlobals*)’:
layer0/MemoryDebug.h:86:32: warning: deleting object of polymorphic class type ‘CButMode’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
   86 | #define DeleteP(ptr) {if(ptr) {delete ptr;ptr=NULL;}}
layer1/ButMode.cpp:144:3: note: in expansion of macro ‘DeleteP’
  144 |   DeleteP(G->ButMode);
      |   ^~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/CGO.cpp -o build/temp.linux-x86_64-cpython-311/layer1/CGO.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/P.cpp -o build/temp.linux-x86_64-cpython-311/layer1/P.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer1/CGO.cpp: In function ‘void CheckAttributesForUsage(const CGO*, AttribDataDesc&, AttribDataDesc&, CGO*, bool&)’:
layer1/CGO.cpp:10842:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
10842 |     for (auto idx = 0; idx < attrIdx; ++idx){
      |                        ~~~~^~~~~~~~~
layer1/CGO.cpp: In function ‘void PopulateOpsIntoStructuresForConversion(std::map<int, int>&, std::map<int, std::map<int, AttribOp*> >&, AttribDataDesc&, AttribDataDesc&, int&, bool)’:
layer1/CGO.cpp:10920:37: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
10920 |           if (attrOp->incr_vertices != vertsperpickinfo){
      |               ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
layer1/CGO.cpp: In function ‘CGO* CGOConvertToShader(const CGO*, AttribDataDesc&, AttribDataDesc&, int, GenericBuffer<34962>::buffer_layout, bool, int*, int, int)’:
layer1/CGO.cpp:11222:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<AttribDesc>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
11222 |             for (auto idx = 0; idx < attrData.size(); ++idx){
      |                                ~~~~^~~~~~~~~~~~~~~~~
layer1/CGO.cpp:11234:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<AttribDesc>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
11234 |             for (auto idx = 0; idx < attrData.size(); ++idx){
      |                                ~~~~^~~~~~~~~~~~~~~~~
layer1/CGO.cpp:11243:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
11243 |           for (int nxt = 0; nxt < attribOp->incr_vertices; ++nxt){
      |                             ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
layer1/P.cpp: In function ‘int WrapperObjectAssignSubScript(PyObject*, PyObject*, PyObject*)’:
layer1/P.cpp:825:26: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare]
  825 |       if (strlen(valstr) > ap->maxlen) {
      |           ~~~~~~~~~~~~~~~^~~~~~~~~~~~
layer1/P.cpp:849:18: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare]
  849 |       if (valint == -1 && PyErr_Occurred())
      |           ~~~~~~~^~~~~
layer1/P.cpp: In function ‘int PAutoBlock(PyMOLGlobals*)’:
layer1/P.cpp:2288:27: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘long unsigned int’ [-Wsign-compare]
 2288 |     if (SavedThread[a].id == id) {
      |         ~~~~~~~~~~~~~~~~~~^~~~~
layer1/P.cpp: In function ‘int PIsGlutThread()’:
layer1/P.cpp:2314:39: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘long int’ [-Wsign-compare]
 2314 |   return (PyThread_get_thread_ident() == P_glut_thread_id);
      |           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
layer1/P.cpp: At global scope:
layer1/P.cpp:2422:13: warning: ‘void PLockAPIWhileBlocked(PyMOLGlobals*)’ defined but not used [-Wunused-function]
 2422 | static void PLockAPIWhileBlocked(PyMOLGlobals * G)
      |             ^~~~~~~~~~~~~~~~~~~~
layer1/P.cpp:2411:13: warning: ‘void PUnlockAPIWhileBlocked(PyMOLGlobals*)’ defined but not used [-Wunused-function]
 2411 | static void PUnlockAPIWhileBlocked(PyMOLGlobals * G)
      |             ^~~~~~~~~~~~~~~~~~~~~~
layer1/P.cpp: In function ‘PLabelAtomAlt(PyMOLGlobals*, AtomInfoType*, char const*, char const*, int)’:
layer1/P.cpp:322:12: warning: ‘strncpy’ specified bound 1024 equals destination size [-Wstringop-truncation]
  322 |     strncpy(label, origexpr, OrthoLineLength);
      |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/PConv.cpp -o build/temp.linux-x86_64-cpython-311/layer1/PConv.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer1/PConv.cpp: In function ‘int PConvPyListToBitmask(PyObject*, int*, ov_size)’:
layer1/PConv.cpp:83:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘ov_size’ {aka ‘long unsigned int’} [-Wsign-compare]
   83 |   for(int i = 0; i < ll; i++)
      |                  ~~^~~~
layer1/PConv.cpp: In function ‘PyObject* PConvLabPosVecToPyList(const std::vector<LabPosType>&)’:
layer1/PConv.cpp:1194:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<LabPosType>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1194 |     for (int a = 0; a < vec.size(); a++) {
      |                     ~~^~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/Picking.cpp -o build/temp.linux-x86_64-cpython-311/layer1/Picking.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/Pop.cpp -o build/temp.linux-x86_64-cpython-311/layer1/Pop.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In file included from layer1/Pop.cpp:22:
layer1/Pop.cpp: In function ‘void PopFree(PyMOLGlobals*)’:
layer0/MemoryDebug.h:86:32: warning: deleting object of polymorphic class type ‘CPop’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
   86 | #define DeleteP(ptr) {if(ptr) {delete ptr;ptr=NULL;}}
layer1/Pop.cpp:54:3: note: in expansion of macro ‘DeleteP’
   54 |   DeleteP(G->Pop);
      |   ^~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/PyMOLObject.cpp -o build/temp.linux-x86_64-cpython-311/layer1/PyMOLObject.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/Ray.cpp -o build/temp.linux-x86_64-cpython-311/layer1/Ray.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer1/Ray.cpp: In function ‘void RayRender(CRay*, unsigned int*, double, float, int, unsigned int*)’:
layer1/Ray.cpp:6065:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
 6065 |       if(x_stop > width)
      |          ~~~~~~~^~~~~~~
layer1/Ray.cpp:6067:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
 6067 |       if(y_stop > height)
      |          ~~~~~~~^~~~~~~~
layer1/Ray.cpp:6148:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
 6148 |       for(y = 0; y < height; y++)
      |                  ~~^~~~~~~~
layer1/Ray.cpp:6149:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
 6149 |         for(x = 0; x < width; x++) {
      |                    ~~^~~~~~~
layer1/Ray.cpp:6160:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
 6160 |           if(x < (width - 1)) {
      |              ~~^~~~~~~~~~~~~
layer1/Ray.cpp:6171:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
 6171 |           if(y < (height - 1)) {
      |              ~~^~~~~~~~~~~~~~
layer1/Ray.cpp:6232:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
 6232 |             for(y = 0; y < height; y++)
      |                        ~~^~~~~~~~
layer1/Ray.cpp:6233:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
 6233 |               for(x = 0; x < width; x++) {
      |                          ~~^~~~~~~
layer1/Ray.cpp:6243:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
 6243 |                   if(x < (width - 1)) {
      |                      ~~^~~~~~~~~~~~~
layer1/Ray.cpp:6255:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
 6255 |                   if(y < (height - 1)) {
      |                      ~~^~~~~~~~~~~~~~
layer1/Ray.cpp:6306:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
 6306 |           for(y = 0; y < height; y++){
      |                      ~~^~~~~~~~
layer1/Ray.cpp:6326:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
 6326 |             for(x = 0; x < width; x++) {
      |                        ~~^~~~~~~
layer1/Ray.cpp:6345:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
 6345 |                   if(x < (width - 1)) {
      |                      ~~^~~~~~~~~~~~~
layer1/Ray.cpp:6359:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
 6359 |                   if(y < (height - 1)) {
      |                      ~~^~~~~~~~~~~~~~
layer1/Ray.cpp:6373:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
 6373 |                   if(x && (y < (height - 1))) {
      |                            ~~^~~~~~~~~~~~~~
layer1/Ray.cpp:6380:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
 6380 |                   if(y && (x < (width - 1))) {
      |                            ~~^~~~~~~~~~~~~
layer1/Ray.cpp:6387:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
 6387 |                   if((y < (height - 1)) && (x < (width - 1))) {
      |                       ~~^~~~~~~~~~~~~~
layer1/Ray.cpp:6387:47: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
 6387 |                   if((y < (height - 1)) && (x < (width - 1))) {
      |                                             ~~^~~~~~~~~~~~~
layer1/Ray.cpp:6543:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
 6543 |       for(y = 0; y < height; y++) {
      |                  ~~^~~~~~~~
layer1/Ray.cpp:6544:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
 6544 |         for(x = 0; x < width; x++) {
      |                    ~~^~~~~~~
layer1/Ray.cpp: In function ‘RayRenderVRML2(_CRay*, int, int, char**, float, float, float, float, float)’:
layer1/Ray.cpp:1535:20: warning: ‘%s’ directive writing up to 1023 bytes into a region of size between 0 and 914 [-Wformat-overflow=]
 1535 |                   "%s"
      |                    ^~
......
 1540 |                   vert2[2] - mid[2], axis[0], axis[1], axis[2], angle, geometry);
      |                                                                        ~~~~~~~~
layer1/Ray.cpp:1530:18: note: ‘sprintf’ output between 116 and 3302 bytes into a destination of size 1024
 1530 |           sprintf(buffer,
      |           ~~~~~~~^~~~~~~~
 1531 |                   "Transform {\n"
      |                   ~~~~~~~~~~~~~~~
 1532 |                   " translation %8.6f %8.6f %8.6f\n"
      |                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1533 |                   " rotation %8.6f %8.6f %8.6f %8.6f\n"
      |                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1534 |                   " children [\n"
      |                   ~~~~~~~~~~~~~~~
 1535 |                   "%s"
      |                   ~~~~
 1536 |                   " ]\n"
      |                   ~~~~~~
 1537 |                   "}\n",
      |                   ~~~~~~
 1538 |                   vert2[0] - mid[0],
      |                   ~~~~~~~~~~~~~~~~~~
 1539 |                   vert2[1] - mid[1],
      |                   ~~~~~~~~~~~~~~~~~~
 1540 |                   vert2[2] - mid[2], axis[0], axis[1], axis[2], angle, geometry);
      |                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer1/Ray.cpp: In member function ‘_CRay::triangle3fv(float const*, float const*, float const*, float const*, float const*, float const*, float const*, float const*, float const*)’:
layer1/Ray.cpp:7312:36: warning: ‘MEM[(float *)&nx]’ may be used uninitialized [-Wmaybe-uninitialized]
 7312 |   float n0[3] = { 0.f, 0.f, 1.f }, nx[3], s1[3], s2[3], s3[3];
      |                                    ^~
layer1/Ray.cpp:7312:36: warning: ‘MEM[(float *)&nx + 4B]’ may be used uninitialized [-Wmaybe-uninitialized]
layer1/Ray.cpp: In function ‘RayTraceThread(_CRayThreadInfo*)’:
layer1/Ray.cpp:3606:39: warning: ‘hl’ may be used uninitialized [-Wmaybe-uninitialized]
 3606 |           compute_background_for_pixel(bkrd_uc, isOutsideInY,
      |           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
 3607 |               bg_image_mode, bg_image_tilesize, bg_rgb, bg_image_linear,
      |               ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 3608 |               (unsigned char*) T->bkrd_data, T->bgWidth, T->bgHeight,
      |               ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 3609 |               x, wr, hl, hpixelx, orig_opaque_back );
      |               ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer1/Ray.cpp:3269:9: note: ‘hl’ was declared here
 3269 |   float hl;
      |         ^~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/Rep.cpp -o build/temp.linux-x86_64-cpython-311/layer1/Rep.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/Scene.cpp -o build/temp.linux-x86_64-cpython-311/layer1/Scene.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer1/Scene.cpp: In function ‘int SceneViewEqual(float*, float*)’:
layer1/Scene.cpp:127:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const std::size_t’ {aka ‘const long unsigned int’} [-Wsign-compare]
  127 |   for(i = 0; i < cSceneViewSize; i++) {
      |              ~~^~~~~~~~~~~~~~~~
layer1/Scene.cpp: In function ‘void SceneFree(PyMOLGlobals*)’:
layer1/Scene.cpp:4071:3: warning: deleting object of polymorphic class type ‘CScene’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
 4071 |   delete G->Scene;
      |   ^~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/COLLADA.cpp -o build/temp.linux-x86_64-cpython-311/layer1/COLLADA.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/Character.cpp -o build/temp.linux-x86_64-cpython-311/layer1/Character.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/Color.cpp -o build/temp.linux-x86_64-cpython-311/layer1/Color.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/SceneMouse.cpp -o build/temp.linux-x86_64-cpython-311/layer1/SceneMouse.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer1/Color.cpp: In function ‘ObjectGadgetRamp* ColorGetRamp(PyMOLGlobals*, int)’:
layer1/Color.cpp:180:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ExtRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  180 |     if (index < I->Ext.size()) {
      |         ~~~~~~^~~~~~~~~~~~~~~
layer1/Color.cpp: In function ‘int ColorExtFromPyList(PyMOLGlobals*, PyObject*, int)’:
layer1/Color.cpp:501:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  501 |   for (int a = 0; a < n_ext; ++a) {
      |                   ~~^~~~~~~
In file included from /usr/include/c++/13/cassert:44,
                 from /usr/include/glm/detail/setup.hpp:3,
                 from /usr/include/glm/detail/qualifier.hpp:3,
                 from /usr/include/glm/detail/type_vec2.hpp:6,
                 from /usr/include/glm/ext/vector_bool2.hpp:5,
                 from /usr/include/glm/vec2.hpp:5,
                 from layer0/GenericBuffer.h:12,
                 from layer0/ShaderMgr.h:24,
                 from layer1/Scene.h:29,
                 from layer3/Executive.h:35,
                 from layer1/Color.cpp:31:
layer1/Color.cpp:515:18: warning: comparison of integer expressions of different signedness: ‘const int’ and ‘std::vector<ExtRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  515 |     assert(a_new <= I->Ext.size());
      |            ~~~~~~^~~~~~~~~~~~~~~~
layer1/Color.cpp:518:15: warning: comparison of integer expressions of different signedness: ‘const int’ and ‘std::vector<ExtRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  518 |     if (a_new == I->Ext.size()) {
      |         ~~~~~~^~~~~~~~~~~~~~~~
layer1/Color.cpp: In function ‘int ColorFromPyList(PyMOLGlobals*, PyObject*, int)’:
layer1/Color.cpp:569:44: warning: comparison of integer expressions of different signedness: ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  569 |     if (partial_restore && I->Color.size() > index) {
      |                            ~~~~~~~~~~~~~~~~^~~~~~~
layer1/Color.cpp:575:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  575 |     if (index >= I->Color.size()) {
      |         ~~~~~~^~~~~~~~~~~~~~~~~~
layer1/Color.cpp:576:30: warning: comparison of integer expressions of different signedness: ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  576 |       assert(I->Color.size() == index);
      |              ~~~~~~~~~~~~~~~~^~~~~~~~
layer1/Color.cpp: In function ‘int ColorGetIndex(PyMOLGlobals*, const char*)’:
layer1/Color.cpp:683:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  683 |       if((i < I->Color.size()) && (i >= 0))
      |           ~~^~~~~~~~~~~~~~~~~
layer1/Color.cpp: In function ‘const char* ColorGetName(PyMOLGlobals*, int)’:
layer1/Color.cpp:764:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  764 |   if((index >= 0) && (index < I->Color.size())) {
      |                       ~~~~~~^~~~~~~~~~~~~~~~~
layer1/Color.cpp:776:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ExtRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  776 |     if (a < I->Ext.size()) {
      |         ~~^~~~~~~~~~~~~~~
layer1/Color.cpp: In function ‘int ColorGetStatus(PyMOLGlobals*, int)’:
layer1/Color.cpp:792:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  792 |   if((index >= 0) && (index < I->Color.size())) {
      |                       ~~~~~~^~~~~~~~~~~~~~~~~
layer1/Color.cpp: In function ‘void ColorReset(PyMOLGlobals*)’:
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1026:3: note: in expansion of macro ‘reg_named_color’
 1026 |   reg_named_color("white", 1.F, 1.F, 1.F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1027:3: note: in expansion of macro ‘reg_named_color’
 1027 |   reg_named_color("black", 0.F, 0.F, 0.F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1028:3: note: in expansion of macro ‘reg_named_color’
 1028 |   reg_named_color("blue", 0.F, 0.F, 1.F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1029:3: note: in expansion of macro ‘reg_named_color’
 1029 |   reg_named_color("green", 0.F, 1.F, 0.F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1030:3: note: in expansion of macro ‘reg_named_color’
 1030 |   reg_named_color("red", 1.F, 0.F, 0.F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1031:3: note: in expansion of macro ‘reg_named_color’
 1031 |   reg_named_color("cyan", 0.F, 1.F, 1.F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1032:3: note: in expansion of macro ‘reg_named_color’
 1032 |   reg_named_color("yellow", 1.F, 1.F, 0.F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1033:3: note: in expansion of macro ‘reg_named_color’
 1033 |   reg_named_color("dash", 1.F, 1.F, 0.F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1034:3: note: in expansion of macro ‘reg_named_color’
 1034 |   reg_named_color("magenta", 1.F, 0.F, 1.F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1035:3: note: in expansion of macro ‘reg_named_color’
 1035 |   reg_named_color("salmon", 1.F, 0.6F, 0.6F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1036:3: note: in expansion of macro ‘reg_named_color’
 1036 |   reg_named_color("lime", 0.5F, 1.F, 0.5F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1037:3: note: in expansion of macro ‘reg_named_color’
 1037 |   reg_named_color("slate", 0.5F, 0.5F, 1.F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1038:3: note: in expansion of macro ‘reg_named_color’
 1038 |   reg_named_color("hotpink", 1.F, 0.F, 0.5F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1039:3: note: in expansion of macro ‘reg_named_color’
 1039 |   reg_named_color("orange", 1.F, 0.5F, 0.F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1040:3: note: in expansion of macro ‘reg_named_color’
 1040 |   reg_named_color("chartreuse", 0.5F, 1.F, 0.F); /* AKA puke green */
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1041:3: note: in expansion of macro ‘reg_named_color’
 1041 |   reg_named_color("limegreen", 0.F, 1.F, 0.5F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1042:3: note: in expansion of macro ‘reg_named_color’
 1042 |   reg_named_color("purpleblue", 0.5F, 0.F, 1.F); /* legacy name */
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1043:3: note: in expansion of macro ‘reg_named_color’
 1043 |   reg_named_color("marine", 0.F, 0.5F, 1.F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1044:3: note: in expansion of macro ‘reg_named_color’
 1044 |   reg_named_color("olive", 0.77F, 0.7F, 0.F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1045:3: note: in expansion of macro ‘reg_named_color’
 1045 |   reg_named_color("purple", 0.75F, 0.F, 0.75F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1046:3: note: in expansion of macro ‘reg_named_color’
 1046 |   reg_named_color("teal", 0.F, 0.75F, 0.75F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1047:3: note: in expansion of macro ‘reg_named_color’
 1047 |   reg_named_color("ruby", 0.6F, 0.2F, 0.2F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1048:3: note: in expansion of macro ‘reg_named_color’
 1048 |   reg_named_color("forest", 0.2F, 0.6F, 0.2F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1049:3: note: in expansion of macro ‘reg_named_color’
 1049 |   reg_named_color("deepblue", 0.25F, 0.25F, 0.65F); /* was "deep" */
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1050:3: note: in expansion of macro ‘reg_named_color’
 1050 |   reg_named_color("grey", 0.5F, 0.5F, 0.5F); /* english spelling */
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1051:3: note: in expansion of macro ‘reg_named_color’
 1051 |   reg_named_color("gray", 0.5F, 0.5F, 0.5F); /* american spelling */
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1052:3: note: in expansion of macro ‘reg_named_color’
 1052 |   reg_named_color("carbon", 0.2F, 1.F, 0.2F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1053:3: note: in expansion of macro ‘reg_named_color’
 1053 |   reg_named_color("nitrogen", 0.2F, 0.2F, 1.F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1054:3: note: in expansion of macro ‘reg_named_color’
 1054 |   reg_named_color("oxygen", 1.F, 0.3F, 0.3F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1055:3: note: in expansion of macro ‘reg_named_color’
 1055 |   reg_named_color("hydrogen", 0.9F, 0.9F, 0.9F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1056:3: note: in expansion of macro ‘reg_named_color’
 1056 |   reg_named_color("brightorange", 1.F, 0.7F, 0.2F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1057:3: note: in expansion of macro ‘reg_named_color’
 1057 |   reg_named_color("sulfur", 0.9F, 0.775F, 0.25F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1058:3: note: in expansion of macro ‘reg_named_color’
 1058 |   reg_named_color("tv_red", 1.F, 0.2F, 0.2F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1059:3: note: in expansion of macro ‘reg_named_color’
 1059 |   reg_named_color("tv_green", 0.2F, 1.F, 0.2F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1060:3: note: in expansion of macro ‘reg_named_color’
 1060 |   reg_named_color("tv_blue", 0.3F, 0.3F, 1.F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1061:3: note: in expansion of macro ‘reg_named_color’
 1061 |   reg_named_color("tv_yellow", 1.F, 1.F, 0.2F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1062:3: note: in expansion of macro ‘reg_named_color’
 1062 |   reg_named_color("yelloworange", 1.F, 0.87F, 0.37F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1063:3: note: in expansion of macro ‘reg_named_color’
 1063 |   reg_named_color("tv_orange", 1.F, 0.55F, 0.15F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1064:3: note: in expansion of macro ‘reg_named_color’
 1064 |   reg_named_color("br0", 0.1F, 0.1F, 1.F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1065:3: note: in expansion of macro ‘reg_named_color’
 1065 |   reg_named_color("br1", 0.2F, 0.1F, 0.9F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1066:3: note: in expansion of macro ‘reg_named_color’
 1066 |   reg_named_color("br2", 0.3F, 0.1F, 0.8F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1067:3: note: in expansion of macro ‘reg_named_color’
 1067 |   reg_named_color("br3", 0.4F, 0.1F, 0.7F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1068:3: note: in expansion of macro ‘reg_named_color’
 1068 |   reg_named_color("br4", 0.5F, 0.1F, 0.6F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1069:3: note: in expansion of macro ‘reg_named_color’
 1069 |   reg_named_color("br5", 0.6F, 0.1F, 0.5F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1070:3: note: in expansion of macro ‘reg_named_color’
 1070 |   reg_named_color("br6", 0.7F, 0.1F, 0.4F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1071:3: note: in expansion of macro ‘reg_named_color’
 1071 |   reg_named_color("br7", 0.8F, 0.1F, 0.3F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1072:3: note: in expansion of macro ‘reg_named_color’
 1072 |   reg_named_color("br8", 0.9F, 0.1F, 0.2F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1073:3: note: in expansion of macro ‘reg_named_color’
 1073 |   reg_named_color("br9", 1.F, 0.1F, 0.1F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1074:3: note: in expansion of macro ‘reg_named_color’
 1074 |   reg_named_color("pink", 1.F, 0.65F, 0.85F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1075:3: note: in expansion of macro ‘reg_named_color’
 1075 |   reg_named_color("firebrick", 0.698F, 0.13F, 0.13F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1076:3: note: in expansion of macro ‘reg_named_color’
 1076 |   reg_named_color("chocolate", 0.555F, 0.222F, 0.111F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1077:3: note: in expansion of macro ‘reg_named_color’
 1077 |   reg_named_color("brown", 0.65F, 0.32F, 0.17F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1078:3: note: in expansion of macro ‘reg_named_color’
 1078 |   reg_named_color("wheat", 0.99F, 0.82F, 0.65F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1079:3: note: in expansion of macro ‘reg_named_color’
 1079 |   reg_named_color("violet", 1.F, 0.5F, 1.F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1088:5: note: in expansion of macro ‘reg_named_color’
 1088 |     reg_named_color(name, a / 99.F, a / 99.F, a / 99.F);
      |     ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1091:3: note: in expansion of macro ‘reg_named_color’
 1091 |   reg_named_color("lightmagenta", 1.F, 0.2F, 0.8F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1105:5: note: in expansion of macro ‘reg_named_color’
 1105 |     reg_named_color(name,
      |     ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1121:5: note: in expansion of macro ‘reg_named_color’
 1121 |     reg_named_color(name,
      |     ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1137:5: note: in expansion of macro ‘reg_named_color’
 1137 |     reg_named_color(name,
      |     ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1155:5: note: in expansion of macro ‘reg_named_color’
 1155 |     reg_named_color(name,
      |     ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1161:3: note: in expansion of macro ‘reg_named_color’
 1161 |   reg_named_color("density", 0.1F, 0.1F, 0.6F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1168:5: note: in expansion of macro ‘reg_named_color’
 1168 |     reg_named_color(name, a / 99.F, a / 99.F, a / 99.F);
      |     ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1183:5: note: in expansion of macro ‘reg_named_color’
 1183 |     reg_named_color(name,
      |     ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1189:3: note: in expansion of macro ‘reg_named_color’
 1189 |   reg_named_color("paleyellow", 1.F, 1.F, 0.5F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1190:3: note: in expansion of macro ‘reg_named_color’
 1190 |   reg_named_color("aquamarine", 0.5F, 1.F, 1.F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1191:3: note: in expansion of macro ‘reg_named_color’
 1191 |   reg_named_color("deepsalmon", 1.F, 0.5F, 0.5F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1192:3: note: in expansion of macro ‘reg_named_color’
 1192 |   reg_named_color("palegreen", 0.65F, 0.9F, 0.65F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1193:3: note: in expansion of macro ‘reg_named_color’
 1193 |   reg_named_color("deepolive", 0.6F, 0.6F, 0.1F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1194:3: note: in expansion of macro ‘reg_named_color’
 1194 |   reg_named_color("deeppurple", 0.6F, 0.1F, 0.6F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1195:3: note: in expansion of macro ‘reg_named_color’
 1195 |   reg_named_color("deepteal", 0.1F, 0.6F, 0.6F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1196:3: note: in expansion of macro ‘reg_named_color’
 1196 |   reg_named_color("lightblue", 0.75F, 0.75F, 1.F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1197:3: note: in expansion of macro ‘reg_named_color’
 1197 |   reg_named_color("lightorange", 1.F, 0.8F, 0.5F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1198:3: note: in expansion of macro ‘reg_named_color’
 1198 |   reg_named_color("palecyan", 0.8F, 1.F, 1.F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1199:3: note: in expansion of macro ‘reg_named_color’
 1199 |   reg_named_color("lightteal", 0.4F, 0.7F, 0.7F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1200:3: note: in expansion of macro ‘reg_named_color’
 1200 |   reg_named_color("splitpea", 0.52F, 0.75F, 0.F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1201:3: note: in expansion of macro ‘reg_named_color’
 1201 |   reg_named_color("raspberry", 0.7F, 0.3F, 0.4F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1202:3: note: in expansion of macro ‘reg_named_color’
 1202 |   reg_named_color("sand", 0.72F, 0.55F, 0.3F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1203:3: note: in expansion of macro ‘reg_named_color’
 1203 |   reg_named_color("smudge", 0.55F, 0.7F, 0.4F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1204:3: note: in expansion of macro ‘reg_named_color’
 1204 |   reg_named_color("violetpurple", 0.55F, 0.25F, 0.6F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1205:3: note: in expansion of macro ‘reg_named_color’
 1205 |   reg_named_color("dirtyviolet", 0.7F, 0.5F, 0.5F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1208:3: note: in expansion of macro ‘reg_named_color’
 1208 |   reg_named_color("_deepsalmon", 1.F, 0.42F, 0.42F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1210:3: note: in expansion of macro ‘reg_named_color’
 1210 |   reg_named_color("lightpink", 1.F, 0.75F, 0.87F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1211:3: note: in expansion of macro ‘reg_named_color’
 1211 |   reg_named_color("greencyan", 0.25F, 1.F, 0.75F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1212:3: note: in expansion of macro ‘reg_named_color’
 1212 |   reg_named_color("limon", 0.75F, 1.F, 0.25F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1213:3: note: in expansion of macro ‘reg_named_color’
 1213 |   reg_named_color("skyblue", 0.2F, 0.5F, 0.8F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1214:3: note: in expansion of macro ‘reg_named_color’
 1214 |   reg_named_color("bluewhite", 0.85F, 0.85F, 1.F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1215:3: note: in expansion of macro ‘reg_named_color’
 1215 |   reg_named_color("warmpink", 0.85F, 0.2F, 0.5F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1216:3: note: in expansion of macro ‘reg_named_color’
 1216 |   reg_named_color("darksalmon", 0.73F, 0.55F, 0.52F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1217:3: note: in expansion of macro ‘reg_named_color’
 1217 |   reg_named_color("helium", 0.850980392F, 1.F, 1.F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1218:3: note: in expansion of macro ‘reg_named_color’
 1218 |   reg_named_color("lithium", 0.8F, 0.501960784F, 1.F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1219:3: note: in expansion of macro ‘reg_named_color’
 1219 |   reg_named_color("beryllium", 0.760784314F, 1.F, 0.F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1220:3: note: in expansion of macro ‘reg_named_color’
 1220 |   reg_named_color("boron", 1.F, 0.709803922F, 0.709803922F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1221:3: note: in expansion of macro ‘reg_named_color’
 1221 |   reg_named_color("fluorine", 0.701960784F, 1.F, 1.F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1222:3: note: in expansion of macro ‘reg_named_color’
 1222 |   reg_named_color("neon", 0.701960784F, 0.890196078F, 0.960784314F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1223:3: note: in expansion of macro ‘reg_named_color’
 1223 |   reg_named_color("sodium", 0.670588235F, 0.360784314F, 0.949019608F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1224:3: note: in expansion of macro ‘reg_named_color’
 1224 |   reg_named_color("magnesium", 0.541176471F, 1.F, 0.F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1225:3: note: in expansion of macro ‘reg_named_color’
 1225 |   reg_named_color("aluminum", 0.749019608F, 0.650980392F, 0.650980392F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1226:3: note: in expansion of macro ‘reg_named_color’
 1226 |   reg_named_color("silicon", 0.941176471F, 0.784313725F, 0.62745098F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1227:3: note: in expansion of macro ‘reg_named_color’
 1227 |   reg_named_color("phosphorus", 1.F, 0.501960784F, 0.F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1228:3: note: in expansion of macro ‘reg_named_color’
 1228 |   reg_named_color("chlorine", 0.121568627F, 0.941176471F, 0.121568627F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1229:3: note: in expansion of macro ‘reg_named_color’
 1229 |   reg_named_color("argon", 0.501960784F, 0.819607843F, 0.890196078F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1230:3: note: in expansion of macro ‘reg_named_color’
 1230 |   reg_named_color("potassium", 0.560784314F, 0.250980392F, 0.831372549F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1231:3: note: in expansion of macro ‘reg_named_color’
 1231 |   reg_named_color("calcium", 0.239215686F, 1.F, 0.F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1232:3: note: in expansion of macro ‘reg_named_color’
 1232 |   reg_named_color("scandium", 0.901960784F, 0.901960784F, 0.901960784F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1233:3: note: in expansion of macro ‘reg_named_color’
 1233 |   reg_named_color("titanium", 0.749019608F, 0.760784314F, 0.780392157F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1234:3: note: in expansion of macro ‘reg_named_color’
 1234 |   reg_named_color("vanadium", 0.650980392F, 0.650980392F, 0.670588235F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1235:3: note: in expansion of macro ‘reg_named_color’
 1235 |   reg_named_color("chromium", 0.541176471F, 0.6F, 0.780392157F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1236:3: note: in expansion of macro ‘reg_named_color’
 1236 |   reg_named_color("manganese", 0.611764706F, 0.478431373F, 0.780392157F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1237:3: note: in expansion of macro ‘reg_named_color’
 1237 |   reg_named_color("iron", 0.878431373F, 0.4F, 0.2F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1238:3: note: in expansion of macro ‘reg_named_color’
 1238 |   reg_named_color("cobalt", 0.941176471F, 0.564705882F, 0.62745098F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1239:3: note: in expansion of macro ‘reg_named_color’
 1239 |   reg_named_color("nickel", 0.31372549F, 0.815686275F, 0.31372549F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1240:3: note: in expansion of macro ‘reg_named_color’
 1240 |   reg_named_color("copper", 0.784313725F, 0.501960784F, 0.2F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1241:3: note: in expansion of macro ‘reg_named_color’
 1241 |   reg_named_color("zinc", 0.490196078F, 0.501960784F, 0.690196078F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1242:3: note: in expansion of macro ‘reg_named_color’
 1242 |   reg_named_color("gallium", 0.760784314F, 0.560784314F, 0.560784314F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1243:3: note: in expansion of macro ‘reg_named_color’
 1243 |   reg_named_color("germanium", 0.4F, 0.560784314F, 0.560784314F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1244:3: note: in expansion of macro ‘reg_named_color’
 1244 |   reg_named_color("arsenic", 0.741176471F, 0.501960784F, 0.890196078F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1245:3: note: in expansion of macro ‘reg_named_color’
 1245 |   reg_named_color("selenium", 1.F, 0.631372549F, 0.F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1246:3: note: in expansion of macro ‘reg_named_color’
 1246 |   reg_named_color("bromine", 0.650980392F, 0.160784314F, 0.160784314F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1247:3: note: in expansion of macro ‘reg_named_color’
 1247 |   reg_named_color("krypton", 0.360784314F, 0.721568627F, 0.819607843F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1248:3: note: in expansion of macro ‘reg_named_color’
 1248 |   reg_named_color("rubidium", 0.439215686F, 0.180392157F, 0.690196078F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1249:3: note: in expansion of macro ‘reg_named_color’
 1249 |   reg_named_color("strontium", 0.F, 1.F, 0.F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1250:3: note: in expansion of macro ‘reg_named_color’
 1250 |   reg_named_color("yttrium", 0.580392157F, 1.F, 1.F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1251:3: note: in expansion of macro ‘reg_named_color’
 1251 |   reg_named_color("zirconium", 0.580392157F, 0.878431373F, 0.878431373F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1252:3: note: in expansion of macro ‘reg_named_color’
 1252 |   reg_named_color("niobium", 0.450980392F, 0.760784314F, 0.788235294F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1253:3: note: in expansion of macro ‘reg_named_color’
 1253 |   reg_named_color("molybdenum", 0.329411765F, 0.709803922F, 0.709803922F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1254:3: note: in expansion of macro ‘reg_named_color’
 1254 |   reg_named_color("technetium", 0.231372549F, 0.619607843F, 0.619607843F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1255:3: note: in expansion of macro ‘reg_named_color’
 1255 |   reg_named_color("ruthenium", 0.141176471F, 0.560784314F, 0.560784314F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1256:3: note: in expansion of macro ‘reg_named_color’
 1256 |   reg_named_color("rhodium", 0.039215686F, 0.490196078F, 0.549019608F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1257:3: note: in expansion of macro ‘reg_named_color’
 1257 |   reg_named_color("palladium", 0.F, 0.411764706F, 0.521568627F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1258:3: note: in expansion of macro ‘reg_named_color’
 1258 |   reg_named_color("silver", 0.752941176F, 0.752941176F, 0.752941176F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1259:3: note: in expansion of macro ‘reg_named_color’
 1259 |   reg_named_color("cadmium", 1.F, 0.850980392F, 0.560784314F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1260:3: note: in expansion of macro ‘reg_named_color’
 1260 |   reg_named_color("indium", 0.650980392F, 0.458823529F, 0.450980392F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1261:3: note: in expansion of macro ‘reg_named_color’
 1261 |   reg_named_color("tin", 0.4F, 0.501960784F, 0.501960784F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1262:3: note: in expansion of macro ‘reg_named_color’
 1262 |   reg_named_color("antimony", 0.619607843F, 0.388235294F, 0.709803922F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1263:3: note: in expansion of macro ‘reg_named_color’
 1263 |   reg_named_color("tellurium", 0.831372549F, 0.478431373F, 0.F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1264:3: note: in expansion of macro ‘reg_named_color’
 1264 |   reg_named_color("iodine", 0.580392157F, 0.F, 0.580392157F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1265:3: note: in expansion of macro ‘reg_named_color’
 1265 |   reg_named_color("xenon", 0.258823529F, 0.619607843F, 0.690196078F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1266:3: note: in expansion of macro ‘reg_named_color’
 1266 |   reg_named_color("cesium", 0.341176471F, 0.090196078F, 0.560784314F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1267:3: note: in expansion of macro ‘reg_named_color’
 1267 |   reg_named_color("barium", 0.F, 0.788235294F, 0.F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1268:3: note: in expansion of macro ‘reg_named_color’
 1268 |   reg_named_color("lanthanum", 0.439215686F, 0.831372549F, 1.F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1269:3: note: in expansion of macro ‘reg_named_color’
 1269 |   reg_named_color("cerium", 1.F, 1.F, 0.780392157F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1270:3: note: in expansion of macro ‘reg_named_color’
 1270 |   reg_named_color("praseodymium", 0.850980392F, 1.F, 0.780392157F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1271:3: note: in expansion of macro ‘reg_named_color’
 1271 |   reg_named_color("neodymium", 0.780392157F, 1.F, 0.780392157F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1272:3: note: in expansion of macro ‘reg_named_color’
 1272 |   reg_named_color("promethium", 0.639215686F, 1.F, 0.780392157F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1273:3: note: in expansion of macro ‘reg_named_color’
 1273 |   reg_named_color("samarium", 0.560784314F, 1.F, 0.780392157F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1274:3: note: in expansion of macro ‘reg_named_color’
 1274 |   reg_named_color("europium", 0.380392157F, 1.F, 0.780392157F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1275:3: note: in expansion of macro ‘reg_named_color’
 1275 |   reg_named_color("gadolinium", 0.270588235F, 1.F, 0.780392157F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1276:3: note: in expansion of macro ‘reg_named_color’
 1276 |   reg_named_color("terbium", 0.188235294F, 1.F, 0.780392157F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1277:3: note: in expansion of macro ‘reg_named_color’
 1277 |   reg_named_color("dysprosium", 0.121568627F, 1.F, 0.780392157F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1278:3: note: in expansion of macro ‘reg_named_color’
 1278 |   reg_named_color("holmium", 0.F, 1.F, 0.611764706F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1279:3: note: in expansion of macro ‘reg_named_color’
 1279 |   reg_named_color("erbium", 0.F, 0.901960784F, 0.458823529F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1280:3: note: in expansion of macro ‘reg_named_color’
 1280 |   reg_named_color("thulium", 0.F, 0.831372549F, 0.321568627F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1281:3: note: in expansion of macro ‘reg_named_color’
 1281 |   reg_named_color("ytterbium", 0.F, 0.749019608F, 0.219607843F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1282:3: note: in expansion of macro ‘reg_named_color’
 1282 |   reg_named_color("lutetium", 0.F, 0.670588235F, 0.141176471F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1283:3: note: in expansion of macro ‘reg_named_color’
 1283 |   reg_named_color("hafnium", 0.301960784F, 0.760784314F, 1.F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1284:3: note: in expansion of macro ‘reg_named_color’
 1284 |   reg_named_color("tantalum", 0.301960784F, 0.650980392F, 1.F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1285:3: note: in expansion of macro ‘reg_named_color’
 1285 |   reg_named_color("tungsten", 0.129411765F, 0.580392157F, 0.839215686F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1286:3: note: in expansion of macro ‘reg_named_color’
 1286 |   reg_named_color("rhenium", 0.149019608F, 0.490196078F, 0.670588235F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1287:3: note: in expansion of macro ‘reg_named_color’
 1287 |   reg_named_color("osmium", 0.149019608F, 0.4F, 0.588235294F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1288:3: note: in expansion of macro ‘reg_named_color’
 1288 |   reg_named_color("iridium", 0.090196078F, 0.329411765F, 0.529411765F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1289:3: note: in expansion of macro ‘reg_named_color’
 1289 |   reg_named_color("platinum", 0.815686275F, 0.815686275F, 0.878431373F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1290:3: note: in expansion of macro ‘reg_named_color’
 1290 |   reg_named_color("gold", 1.F, 0.819607843F, 0.137254902F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1291:3: note: in expansion of macro ‘reg_named_color’
 1291 |   reg_named_color("mercury", 0.721568627F, 0.721568627F, 0.815686275F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1292:3: note: in expansion of macro ‘reg_named_color’
 1292 |   reg_named_color("thallium", 0.650980392F, 0.329411765F, 0.301960784F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1293:3: note: in expansion of macro ‘reg_named_color’
 1293 |   reg_named_color("lead", 0.341176471F, 0.349019608F, 0.380392157F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1294:3: note: in expansion of macro ‘reg_named_color’
 1294 |   reg_named_color("bismuth", 0.619607843F, 0.309803922F, 0.709803922F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1295:3: note: in expansion of macro ‘reg_named_color’
 1295 |   reg_named_color("polonium", 0.670588235F, 0.360784314F, 0.F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1296:3: note: in expansion of macro ‘reg_named_color’
 1296 |   reg_named_color("astatine", 0.458823529F, 0.309803922F, 0.270588235F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1297:3: note: in expansion of macro ‘reg_named_color’
 1297 |   reg_named_color("radon", 0.258823529F, 0.509803922F, 0.588235294F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1298:3: note: in expansion of macro ‘reg_named_color’
 1298 |   reg_named_color("francium", 0.258823529F, 0.F, 0.4F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1299:3: note: in expansion of macro ‘reg_named_color’
 1299 |   reg_named_color("radium", 0.F, 0.490196078F, 0.F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1300:3: note: in expansion of macro ‘reg_named_color’
 1300 |   reg_named_color("actinium", 0.439215686F, 0.670588235F, 0.980392157F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1301:3: note: in expansion of macro ‘reg_named_color’
 1301 |   reg_named_color("thorium", 0.F, 0.729411765F, 1.F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1302:3: note: in expansion of macro ‘reg_named_color’
 1302 |   reg_named_color("protactinium", 0.F, 0.631372549F, 1.F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1303:3: note: in expansion of macro ‘reg_named_color’
 1303 |   reg_named_color("uranium", 0.F, 0.560784314F, 1.F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1304:3: note: in expansion of macro ‘reg_named_color’
 1304 |   reg_named_color("neptunium", 0.F, 0.501960784F, 1.F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1305:3: note: in expansion of macro ‘reg_named_color’
 1305 |   reg_named_color("plutonium", 0.F, 0.419607843F, 1.F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1306:3: note: in expansion of macro ‘reg_named_color’
 1306 |   reg_named_color("americium", 0.329411765F, 0.360784314F, 0.949019608F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1307:3: note: in expansion of macro ‘reg_named_color’
 1307 |   reg_named_color("curium", 0.470588235F, 0.360784314F, 0.890196078F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1308:3: note: in expansion of macro ‘reg_named_color’
 1308 |   reg_named_color("berkelium", 0.541176471F, 0.309803922F, 0.890196078F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1309:3: note: in expansion of macro ‘reg_named_color’
 1309 |   reg_named_color("californium", 0.631372549F, 0.211764706F, 0.831372549F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1310:3: note: in expansion of macro ‘reg_named_color’
 1310 |   reg_named_color("einsteinium", 0.701960784F, 0.121568627F, 0.831372549F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1311:3: note: in expansion of macro ‘reg_named_color’
 1311 |   reg_named_color("fermium", 0.701960784F, 0.121568627F, 0.729411765F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1312:3: note: in expansion of macro ‘reg_named_color’
 1312 |   reg_named_color("mendelevium", 0.701960784F, 0.050980392F, 0.650980392F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1313:3: note: in expansion of macro ‘reg_named_color’
 1313 |   reg_named_color("nobelium", 0.741176471F, 0.050980392F, 0.529411765F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1314:3: note: in expansion of macro ‘reg_named_color’
 1314 |   reg_named_color("lawrencium", 0.780392157F, 0.F, 0.4F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1315:3: note: in expansion of macro ‘reg_named_color’
 1315 |   reg_named_color("rutherfordium", 0.8F, 0.F, 0.349019608F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1316:3: note: in expansion of macro ‘reg_named_color’
 1316 |   reg_named_color("dubnium", 0.819607843F, 0.F, 0.309803922F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1317:3: note: in expansion of macro ‘reg_named_color’
 1317 |   reg_named_color("seaborgium", 0.850980392F, 0.F, 0.270588235F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1318:3: note: in expansion of macro ‘reg_named_color’
 1318 |   reg_named_color("bohrium", 0.878431373F, 0.F, 0.219607843F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1319:3: note: in expansion of macro ‘reg_named_color’
 1319 |   reg_named_color("hassium", 0.901960784F, 0.F, 0.180392157F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1320:3: note: in expansion of macro ‘reg_named_color’
 1320 |   reg_named_color("meitnerium", 0.921568627F, 0.F, 0.149019608F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1321:3: note: in expansion of macro ‘reg_named_color’
 1321 |   reg_named_color("deuterium", 0.9F, 0.9F, 0.9F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1322:3: note: in expansion of macro ‘reg_named_color’
 1322 |   reg_named_color("lonepair", 0.5F, 0.5F, 0.5F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1023 |     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1323:3: note: in expansion of macro ‘reg_named_color’
 1323 |   reg_named_color("pseudoatom", 0.9F, 0.9F, 0.9F);
      |   ^~~~~~~~~~~~~~~
layer1/Color.cpp: In function ‘void ColorUpdateFromLut(PyMOLGlobals*, int)’:
layer1/Color.cpp:1695:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1695 |   for(i = 0; i < I->Color.size(); i++) {
      |              ~~^~~~~~~~~~~~~~~~~
layer1/Color.cpp:1699:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1699 |     if(index < I->Color.size()) {
      |        ~~~~~~^~~~~~~~~~~~~~~~~
layer1/Color.cpp: In function ‘const float* ColorGet(PyMOLGlobals*, int)’:
layer1/Color.cpp:1808:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1808 |   if((index >= 0) && (index < I->Color.size())) {
      |                       ~~~~~~^~~~~~~~~~~~~~~~~
layer1/Color.cpp: In function ‘const float* ColorGetRaw(PyMOLGlobals*, int)’:
layer1/Color.cpp:1835:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1835 |   if((index >= 0) && (index < I->Color.size())) {
      |                       ~~~~~~^~~~~~~~~~~~~~~~~
layer1/Color.cpp: In function ‘int ColorGetEncoded(PyMOLGlobals*, int, float*)’:
layer1/Color.cpp:1853:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1853 |   if((index >= 0) && (index < I->Color.size())) {
      |                       ~~~~~~^~~~~~~~~~~~~~~~~
layer1/Color.cpp: In instantiation of ‘int findByCaseInsensitiveName(PyMOLGlobals*, const Sequence&, const char*) [with Sequence = std::vector<ExtRec>]’:
layer1/Color.cpp:304:35:   required from here
layer1/Color.cpp:245:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ExtRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  245 |   for (int a = 0; a < seq.size(); ++a) {
      |                   ~~^~~~~~~~~~~~
layer1/Color.cpp: In instantiation of ‘int findByCaseInsensitiveName(PyMOLGlobals*, const Sequence&, const char*) [with Sequence = std::vector<ColorRec>]’:
layer1/Color.cpp:626:38:   required from here
layer1/Color.cpp:245:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
layer1/Color.cpp: In instantiation of ‘int findByCaseInsensitivePrefix(PyMOLGlobals*, const Sequence&, const char*, int&) [with Sequence = std::vector<ColorRec>]’:
layer1/Color.cpp:741:42:   required from here
layer1/Color.cpp:275:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  275 |   for (int a = 0; a < seq.size(); ++a) {
      |                   ~~^~~~~~~~~~~~
layer1/Color.cpp: In instantiation of ‘int findByCaseInsensitivePrefix(PyMOLGlobals*, const Sequence&, const char*, int&) [with Sequence = std::vector<ExtRec>]’:
layer1/Color.cpp:743:54:   required from here
layer1/Color.cpp:275:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ExtRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
layer1/SceneMouse.cpp: In function ‘void SceneClickPickBond(PyMOLGlobals*, int, int, int, const NamedPicking&)’:
layer1/SceneMouse.cpp:513:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare]
  513 |     if (atIndex == LastPicked.src.index)
      |         ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
layer1/SceneMouse.cpp: In function ‘SceneClickTransformObject(PyMOLGlobals*, pymol::CObject*, NamedPicking const&, int, bool)’:
layer1/SceneMouse.cpp:455:32: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 237 [-Wformat-truncation=]
  455 |           " You clicked %s -> (%s)\n", buffer.c_str(), name ENDFB(G);
      |                                ^~                      ~~~~
In file included from /usr/include/stdio.h:906,
                 from /usr/include/c++/13/cstdio:42,
                 from /usr/include/c++/13/ext/string_conversions.h:45,
                 from /usr/include/c++/13/bits/basic_string.h:4072,
                 from /usr/include/c++/13/string:54,
                 from /usr/include/c++/13/bits/locale_classes.h:40,
                 from /usr/include/c++/13/bits/ios_base.h:41,
                 from /usr/include/c++/13/ios:44,
                 from /usr/include/c++/13/ostream:40,
                 from include/pymol/zstring_view.h:12,
                 from layer1/SceneMouse.h:4,
                 from layer1/SceneMouse.cpp:1:
In function ‘snprintf’,
    inlined from ‘SceneClickTransformObject(PyMOLGlobals*, pymol::CObject*, NamedPicking const&, int, bool)’ at layer1/SceneMouse.cpp:454:11:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output 21 or more bytes (assuming 276) into a destination of size 255
   54 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   55 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   56 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/ScenePicking.cpp -o build/temp.linux-x86_64-cpython-311/layer1/ScenePicking.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In function ‘SceneRenderPickingMultiPick(PyMOLGlobals*, SceneUnitContext*, Multipick*, unsigned int)’,
    inlined from ‘SceneRenderPicking(PyMOLGlobals*, int, int*, int, Picking*, int, int, Multipick*, SceneUnitContext*, unsigned int)’ at layer1/ScenePicking.cpp:314:32:
layer1/ScenePicking.cpp:249:7: warning: ‘previous.src.index’ may be used uninitialized [-Wmaybe-uninitialized]
  249 |       if (pik->src.index != previous.src.index ||
      |       ^~
layer1/ScenePicking.cpp: In function ‘SceneRenderPicking(PyMOLGlobals*, int, int*, int, Picking*, int, int, Multipick*, SceneUnitContext*, unsigned int)’:
layer1/ScenePicking.cpp:238:11: note: ‘previous.src.index’ was declared here
  238 |   Picking previous;
      |           ^~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/SceneRay.cpp -o build/temp.linux-x86_64-cpython-311/layer1/SceneRay.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/Control.cpp -o build/temp.linux-x86_64-cpython-311/layer1/Control.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In file included from layer0/vla.h:7,
                 from layer1/Symmetry.h:26,
                 from layer1/PyMOLObject.h:27,
                 from layer1/Scene.h:22,
                 from layer1/Control.cpp:25:
layer1/Control.cpp: In function ‘void ControlFree(PyMOLGlobals*)’:
layer0/MemoryDebug.h:86:32: warning: deleting object of polymorphic class type ‘CControl’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
   86 | #define DeleteP(ptr) {if(ptr) {delete ptr;ptr=NULL;}}
layer1/Control.cpp:410:3: note: in expansion of macro ‘DeleteP’
  410 |   DeleteP(G->Control);
      |   ^~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/SceneRender.cpp -o build/temp.linux-x86_64-cpython-311/layer1/SceneRender.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/Extrude.cpp -o build/temp.linux-x86_64-cpython-311/layer1/Extrude.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/ScrollBar.cpp -o build/temp.linux-x86_64-cpython-311/layer1/ScrollBar.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer1/Extrude.cpp: In function ‘ExtrudeComputeTangents(CExtrude*)’:
layer1/Extrude.cpp:741:13: warning: ‘MEM <vector(2) float> [(float *)_63]’ may be used uninitialized [-Wmaybe-uninitialized]
  741 |   *(v1++) = *(v++);             /* first segment */
      |             ^~~~~~
layer1/Extrude.cpp:743:13: warning: ‘MEM[(float *)_63 + 8B]’ may be used uninitialized [-Wmaybe-uninitialized]
  743 |   *(v1++) = *(v++);
      |             ^~~~~~
layer1/Extrude.cpp: In function ‘ExtrudeCGOSurfaceTube(CExtrude const*, CGO*, cCylCap, float const*, bool, int)’:
layer1/Extrude.cpp:948:37: warning: ‘start’ may be used uninitialized [-Wmaybe-uninitialized]
  948 |             if(color_override && (b > start) && (b < stop))
      |                                  ~~~^~~~~~~~
layer1/Extrude.cpp:875:7: note: ‘start’ was declared here
  875 |   int start, stop;
      |       ^~~~~
layer1/Extrude.cpp:948:46: warning: ‘stop’ may be used uninitialized [-Wmaybe-uninitialized]
  948 |             if(color_override && (b > start) && (b < stop))
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
layer1/Extrude.cpp:875:14: note: ‘stop’ was declared here
  875 |   int start, stop;
      |              ^~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/Font.cpp -o build/temp.linux-x86_64-cpython-311/layer1/Font.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/Seq.cpp -o build/temp.linux-x86_64-cpython-311/layer1/Seq.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/FontGLUT.cpp -o build/temp.linux-x86_64-cpython-311/layer1/FontGLUT.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer1/Seq.cpp: In function ‘int SeqFindRowCol(PyMOLGlobals*, int, int, int*, int*, int)’:
layer1/Seq.cpp:61:41: warning: comparison of integer expressions of different signedness: ‘int’ and ‘ov_size’ {aka ‘long unsigned int’} [-Wsign-compare]
   61 |         if((char_num >= 0) && (char_num < row->ext_len) && (row->char2col)) {
      |                                ~~~~~~~~~^~~~~~~~~~~~~~
layer1/Seq.cpp: In member function ‘virtual void CSeq::reshape(int, int)’:
layer1/Seq.cpp:114:28: warning: comparison of integer expressions of different signedness: ‘ov_size’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  114 |       if(I->Row[a].ext_len > I->Size)
layer1/Seq.cpp: In member function ‘virtual void CSeq::draw(CGO*)’:
layer1/Seq.cpp:392:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘ov_size’ {aka ‘long unsigned int’} [-Wsign-compare]
  392 |         if(max_len < row->ext_len)
      |            ~~~~~~~~^~~~~~~~~~~~~~
In file included from layer0/vla.h:7,
                 from layer1/Symmetry.h:26,
                 from layer1/PyMOLObject.h:27,
                 from layer1/Seq.h:21,
                 from layer1/Seq.cpp:22:
layer1/Seq.cpp: In function ‘void SeqFree(PyMOLGlobals*)’:
layer0/MemoryDebug.h:86:32: warning: deleting object of polymorphic class type ‘CSeq’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
   86 | #define DeleteP(ptr) {if(ptr) {delete ptr;ptr=NULL;}}
layer1/Seq.cpp:731:3: note: in expansion of macro ‘DeleteP’
  731 |   DeleteP(G->Seq);
      |   ^~~~~~~
layer1/Seq.cpp: At global scope:
layer1/Seq.cpp:717:13: warning: ‘void SeqPurgeRowVLA(PyMOLGlobals*)’ defined but not used [-Wunused-function]
  717 | static void SeqPurgeRowVLA(PyMOLGlobals * G)
      |             ^~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/FontGLUT8x13.cpp -o build/temp.linux-x86_64-cpython-311/layer1/FontGLUT8x13.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/FontGLUT9x15.cpp -o build/temp.linux-x86_64-cpython-311/layer1/FontGLUT9x15.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/Setting.cpp -o build/temp.linux-x86_64-cpython-311/layer1/Setting.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/Wizard.cpp -o build/temp.linux-x86_64-cpython-311/layer1/Wizard.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer1/Setting.cpp: In function ‘void SettingGenerateSideEffects(PyMOLGlobals*, int, const char*, int, int)’:
layer1/Setting.cpp:2070:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2070 |     if (SettingGetGlobal_b(G, cSetting_precomputed_lighting))
      |     ^~
layer1/Setting.cpp:2072:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2072 |       SceneInvalidate(G);
      |       ^~~~~~~~~~~~~~~
layer1/Wizard.cpp: In member function ‘virtual int CWizard::release(int, int, int, int)’:
layer1/Wizard.cpp:571:18: warning: unused variable ‘wiz’ [-Wunused-variable]
  571 |         if (auto wiz = WizardGet(G)) {
      |                  ^~~
layer1/Wizard.cpp: In member function ‘virtual void CWizard::draw(CGO*)’:
layer1/Wizard.cpp:727:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  727 |     else
      |     ^~~~
layer1/Wizard.cpp:729:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  729 |       drawTopEdge();
      |       ^~~~~~~~~~~
In file included from layer1/Wizard.cpp:27:
layer1/Wizard.cpp: In function ‘void WizardFree(PyMOLGlobals*)’:
layer0/MemoryDebug.h:86:32: warning: deleting object of polymorphic class type ‘CWizard’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
   86 | #define DeleteP(ptr) {if(ptr) {delete ptr;ptr=NULL;}}
layer1/Wizard.cpp:845:3: note: in expansion of macro ‘DeleteP’
  845 |   DeleteP(G->Wizard);
      |   ^~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/AssemblyHelpers.cpp -o build/temp.linux-x86_64-cpython-311/layer2/AssemblyHelpers.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/AtomInfo.cpp -o build/temp.linux-x86_64-cpython-311/layer2/AtomInfo.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer2/AtomInfo.cpp: In function ‘bool AtomResiFromResv(char*, size_t, int, char)’:
layer2/AtomInfo.cpp:817:56: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  817 |     return snprintf(resi, size, "%d%c", resv, inscode) < size;
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
layer2/AtomInfo.cpp:818:43: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  818 |   return snprintf(resi, size, "%d", resv) < size;
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/AtomInfoHistory.cpp -o build/temp.linux-x86_64-cpython-311/layer2/AtomInfoHistory.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/BondTypeHistory.cpp -o build/temp.linux-x86_64-cpython-311/layer2/BondTypeHistory.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/CifFile.cpp -o build/temp.linux-x86_64-cpython-311/layer2/CifFile.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/CifMoleculeReader.cpp -o build/temp.linux-x86_64-cpython-311/layer2/CifMoleculeReader.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer2/CifMoleculeReader.cpp: In member function ‘void seqvec_t::set(int, const char*)’:
layer2/CifMoleculeReader.cpp:108:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  108 |     if (i > size())
      |         ~~^~~~~~~~
layer2/CifMoleculeReader.cpp: In member function ‘const char* seqvec_t::get(int) const’:
layer2/CifMoleculeReader.cpp:114:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  114 |     if (i < 1 || i > size())
      |                  ~~^~~~~~~~
layer2/CifMoleculeReader.cpp: In function ‘CoordSet** read_pdbx_struct_assembly(PyMOLGlobals*, const pymol::cif_data*, const AtomInfoType*, const CoordSet*, const char*)’:
layer2/CifMoleculeReader.cpp:827:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  827 |       while (j < c_src_len * c_it->size()) {
      |              ~~^~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/Shaker.cpp -o build/temp.linux-x86_64-cpython-311/layer1/Shaker.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/SymOp.cpp -o build/temp.linux-x86_64-cpython-311/layer1/SymOp.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer1/SymOp.cpp: In member function ‘pymol::SymOp::to_string[abi:cxx11]() const’:
layer1/SymOp.cpp:37:32: warning: ‘%d’ directive output may be truncated writing between 1 and 4 bytes into a region of size between 0 and 5 [-Wformat-truncation=]
   37 |   std::snprintf(code, 8, "%u_%d%d%d", index + 1, x + 5, y + 5, z + 5);
      |                                ^~
layer1/SymOp.cpp:37:26: note: directive argument in the range [-123, 132]
   37 |   std::snprintf(code, 8, "%u_%d%d%d", index + 1, x + 5, y + 5, z + 5);
      |                          ^~~~~~~~~~~
layer1/SymOp.cpp:37:26: note: directive argument in the range [-123, 132]
In file included from /usr/include/stdio.h:906,
                 from /usr/include/c++/13/cstdio:42,
                 from /usr/include/c++/13/ext/string_conversions.h:45,
                 from /usr/include/c++/13/bits/basic_string.h:4072,
                 from /usr/include/c++/13/string:54,
                 from layer1/SymOp.h:9,
                 from layer1/SymOp.cpp:7:
In function ‘snprintf’,
    inlined from ‘pymol::SymOp::to_string[abi:cxx11]() const’ at layer1/SymOp.cpp:37:16:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 6 and 17 bytes into a destination of size 8
   54 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   55 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   56 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/SymOpPConv.cpp -o build/temp.linux-x86_64-cpython-311/layer1/SymOpPConv.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/SymOpTools.cpp -o build/temp.linux-x86_64-cpython-311/layer1/SymOpTools.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/Symmetry.cpp -o build/temp.linux-x86_64-cpython-311/layer1/Symmetry.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In file included from layer2/CifMoleculeReader.cpp:31:
layer2/CifBondDict.h: In function ‘read_chem_comp_bond_dict(pymol::cif_data const*, bond_dict_t&)’:
layer2/CifBondDict.h:93:12: warning: ‘strncpy’ specified bound 8 equals destination size [-Wstringop-truncation]
   93 |     strncpy(s, s_, sizeof(s));
      |            ^
layer2/CifBondDict.h: In member function ‘bond_dict_t::get(PyMOLGlobals*, char const*, bool)’:
layer2/CifBondDict.h:93:12: warning: ‘strncpy’ specified bound 8 equals destination size [-Wstringop-truncation]
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/Text.cpp -o build/temp.linux-x86_64-cpython-311/layer1/Text.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/CoordSet.cpp -o build/temp.linux-x86_64-cpython-311/layer2/CoordSet.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In file included from /usr/include/c++/13/cassert:44,
                 from layer0/Field.h:24,
                 from layer3/Executive.h:27,
                 from layer2/CoordSet.cpp:54:
layer2/CoordSet.cpp: In member function ‘int CoordSet::atmToIdx(int) const’:
layer2/CoordSet.cpp:134:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  134 |   assert(atm < AtmToIdx.size());
      |          ~~~~^~~~~~~~~~~~~~~~~
layer2/CoordSet.cpp: In member function ‘void CoordSet::updateNonDiscreteAtmToIdx(unsigned int)’:
layer2/CoordSet.cpp:140:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  140 |   assert(!Obj || natom == Obj->NAtom);
      |                  ~~~~~~^~~~~~~~~~~~~
layer2/CoordSet.cpp:145:16: warning: comparison of integer expressions of different signedness: ‘const int’ and ‘unsigned int’ [-Wsign-compare]
  145 |     assert(atm < natom);
      |            ~~~~^~~~~~~
layer2/CoordSet.cpp: In member function ‘int CoordSet::extendIndices(int)’:
layer2/CoordSet.cpp:1572:21: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare]
 1572 |     assert(NAtIndex <= nAtom);
      |            ~~~~~~~~~^~~~~~~~
layer2/CoordSet.cpp:1573:18: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare]
 1573 |     if (NAtIndex < nAtom) {
      |         ~~~~~~~~~^~~~~~~
layer2/CoordSet.cpp: In function ‘void CoordSetAtomToPDBStrVLA(PyMOLGlobals*, char**, int*, const AtomInfoType*, const float*, int, const PDBInfoRec*, const double*)’:
layer2/CoordSet.cpp:1014:14: warning: ‘char* strncpy(char*, const char*, size_t)’ output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation]
 1014 |       strncpy(anisoline, "ANISOU", 6);
      |       ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/DistSet.cpp -o build/temp.linux-x86_64-cpython-311/layer2/DistSet.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer2/DistSet.cpp: In function ‘int DistSetGetLabelVertex(DistSet*, int, float*)’:
layer2/DistSet.cpp:43:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::array<float, 3> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   43 |   if (at >= 0 && at < I->LabCoord.size()) {
      |                  ~~~^~~~~~~~~~~~~~~~~~~~
layer2/DistSet.cpp: In member function ‘pymol::Result<std::array<float, 3> > DistSet::getLabelOffset(int) const’:
layer2/DistSet.cpp:59:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<LabPosType>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   59 |   if (atm < 0 || atm >= this->LabPos.size()) {
      |                  ~~~~^~~~~~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/GadgetSet.cpp -o build/temp.linux-x86_64-cpython-311/layer2/GadgetSet.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/HydrogenAdder.cpp -o build/temp.linux-x86_64-cpython-311/layer2/HydrogenAdder.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer2/HydrogenAdder.cpp: In function ‘int ObjectMoleculeAddSeleHydrogensRefactored(ObjectMolecule*, int, int)’:
layer2/HydrogenAdder.cpp:283:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘const int’ [-Wsign-compare]
  283 |   for (unsigned atm = 0; atm < n_atom_old; atm++) {
      |                          ~~~~^~~~~~~~~~~~
layer2/HydrogenAdder.cpp:301:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘const int’ [-Wsign-compare]
  301 |   for (unsigned atm = 0; atm < n_atom_old; ++atm) {
      |                          ~~~~^~~~~~~~~~~~
layer2/HydrogenAdder.cpp:349:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  349 |     for (unsigned idx = 0; idx < cs->NIndex; ++idx) {
      |                            ~~~~^~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/MmodTyping.cpp -o build/temp.linux-x86_64-cpython-311/layer2/MmodTyping.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/MmtfMoleculeReader.cpp -o build/temp.linux-x86_64-cpython-311/layer2/MmtfMoleculeReader.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer2/MmtfMoleculeReader.cpp: In function ‘ObjectMolecule* ObjectMoleculeReadMmtfStr(PyMOLGlobals*, ObjectMolecule*, const char*, int, int, int, int, int, int)’:
layer2/MmtfMoleculeReader.cpp:171:18: warning: the address of ‘MMTF_container::unitCell’ will never be NULL [-Waddress]
  171 |   if (container->unitCell &&
      |       ~~~~~~~~~~~^~~~~~~~
In file included from layer2/MmtfMoleculeReader.cpp:14:
contrib/mmtf-c/mmtf_parser.h:104:11: note: ‘MMTF_container::unitCell’ declared here
  104 |     float unitCell[6];
      |           ^~~~~~~~
layer2/MmtfMoleculeReader.cpp:223:47: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
  223 |         for (int l = 0, offset = atomIndex; l < group->bondAtomListCount / 2; ++l) {
      |                                             ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/13/cassert:44,
                 from layer0/vla.h:10,
                 from layer1/Symmetry.h:26,
                 from layer1/PyMOLObject.h:27,
                 from layer2/ObjectMolecule.h:24,
                 from layer2/MmtfMoleculeReader.cpp:9:
layer2/MmtfMoleculeReader.cpp:276:34: warning: comparison of integer expressions of different signedness: ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  276 |     assert(cset->IdxToAtm.size() == cset->getNIndex());
      |            ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
layer2/MmtfMoleculeReader.cpp:287:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  287 |   for (int l = 0; l < container->bondAtomListCount / 2; ++l) {
      |                   ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/Mol2Typing.cpp -o build/temp.linux-x86_64-cpython-311/layer2/Mol2Typing.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/MolV3000.cpp -o build/temp.linux-x86_64-cpython-311/layer2/MolV3000.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/ObjectAlignment.cpp -o build/temp.linux-x86_64-cpython-311/layer2/ObjectAlignment.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/TypeFace.cpp -o build/temp.linux-x86_64-cpython-311/layer1/TypeFace.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer1/View.cpp -o build/temp.linux-x86_64-cpython-311/layer1/View.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer2/ObjectAlignment.cpp: In member function ‘ObjectAlignment::update()’:
layer2/ObjectAlignment.cpp:926:39: warning: ‘MEM[(float *)&gvert]’ may be used uninitialized [-Wmaybe-uninitialized]
  926 |               float mean[3], vert[3], gvert[3];
      |                                       ^~~~~
layer2/ObjectAlignment.cpp:926:39: warning: ‘MEM[(float *)&gvert + 4B]’ may be used uninitialized [-Wmaybe-uninitialized]
layer2/ObjectAlignment.cpp:926:39: warning: ‘MEM[(float *)&gvert + 8B]’ may be used uninitialized [-Wmaybe-uninitialized]
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/ObjectVolume.cpp -o build/temp.linux-x86_64-cpython-311/layer2/ObjectVolume.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/ObjectCGO.cpp -o build/temp.linux-x86_64-cpython-311/layer2/ObjectCGO.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer2/ObjectCGO.cpp: In function ‘PyObject* ObjectCGOAllStatesAsPyList(ObjectCGO*)’:
layer2/ObjectCGO.cpp:53:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectCGOState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   53 |   for(a = 0; a < I->State.size(); a++) {
      |              ~~^~~~~~~~~~~~~~~~~
layer2/ObjectCGO.cpp: In function ‘int ObjectCGOAllStatesFromPyList(ObjectCGO*, PyObject*, int)’:
layer2/ObjectCGO.cpp:104:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectCGOState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  104 |     for(a = 0; a < I->State.size(); a++) {
      |                ~~^~~~~~~~~~~~~~~~~
layer2/ObjectCGO.cpp: In member function ‘virtual void ObjectCGO::invalidate(cRep_t, cRepInv_t, int)’:
layer2/ObjectCGO.cpp:205:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectCGOState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  205 |     if((state >= 0) && (state < I->State.size())) {
      |                         ~~~~~~^~~~~~~~~~~~~~~~~
layer2/ObjectCGO.cpp: In member function ‘virtual void ObjectCGO::render(RenderInfo*)’:
layer2/ObjectCGO.cpp:488:9: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  488 |         if (!ray)
      |         ^~
layer2/ObjectCGO.cpp:490:11: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  490 |           ObjectCGORenderState(G, pass, ray, I, info, sobj, color, ramp, use_shader, cgo_lighting);
      |           ^~~~~~~~~~~~~~~~~~~~
In file included from layer2/ObjectCGO.cpp:24:
layer2/ObjectCGO.h: In copy constructor ‘ObjectCGOState::ObjectCGOState(const ObjectCGOState&)’:
layer2/ObjectCGO.h:28:17: warning: ‘ObjectCGOState::G’ will be initialized after [-Wreorder]
   28 |   PyMOLGlobals* G;
      |                 ^
layer2/ObjectCGO.h:27:25: warning:   ‘pymol::cache_ptr<CGO> ObjectCGOState::renderCGO’ [-Wreorder]
   27 |   pymol::cache_ptr<CGO> renderCGO;
      |                         ^~~~~~~~~
layer2/ObjectCGO.cpp:517:1: warning:   when initialized here [-Wreorder]
  517 | ObjectCGOState::ObjectCGOState(const ObjectCGOState& other)
      | ^~~~~~~~~~~~~~
layer2/ObjectCGO.h:29:58: warning: ‘ObjectCGOState::hasOpaque’ will be initialized after [-Wreorder]
   29 |   bool renderWithShaders, hasTransparency, cgo_lighting, hasOpaque;
      |                                                          ^~~~~~~~~
layer2/ObjectCGO.h:29:44: warning:   ‘bool ObjectCGOState::cgo_lighting’ [-Wreorder]
   29 |   bool renderWithShaders, hasTransparency, cgo_lighting, hasOpaque;
      |                                            ^~~~~~~~~~~~
layer2/ObjectCGO.cpp:517:1: warning:   when initialized here [-Wreorder]
  517 | ObjectCGOState::ObjectCGOState(const ObjectCGOState& other)
      | ^~~~~~~~~~~~~~
layer2/ObjectCGO.cpp: In function ‘ObjectCGO* ObjectCGOFromCGO(PyMOLGlobals*, ObjectCGO*, CGO*, int)’:
layer2/ObjectCGO.cpp:602:22: warning: comparison of integer expressions of different signedness: ‘std::vector<ObjectCGOState>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  602 |   if(I->State.size() <= state) {
      |      ~~~~~~~~~~~~~~~~^~~~~~~~
layer2/ObjectCGO.cpp: In function ‘ObjectCGO* ObjectCGODefine(PyMOLGlobals*, ObjectCGO*, PyObject*, int)’:
layer2/ObjectCGO.cpp:667:22: warning: comparison of integer expressions of different signedness: ‘std::vector<ObjectCGOState>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  667 |   if(I->State.size() <= state) {
      |      ~~~~~~~~~~~~~~~~^~~~~~~~
layer2/ObjectCGO.cpp: In function ‘ObjectCGO* ObjectCGOFromFloatArray(PyMOLGlobals*, ObjectCGO*, float*, int, int, int)’:
layer2/ObjectCGO.cpp:725:22: warning: comparison of integer expressions of different signedness: ‘std::vector<ObjectCGOState>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  725 |   if(I->State.size() <= state) {
      |      ~~~~~~~~~~~~~~~~^~~~~~~~
layer2/ObjectVolume.cpp: In function ‘PyObject* ObjectVolumeAllStatesAsPyList(ObjectVolume*)’:
layer2/ObjectVolume.cpp:127:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectVolumeState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  127 |   for(int a = 0; a < I->State.size(); a++) {
      |                  ~~^~~~~~~~~~~~~~~~~
layer2/ObjectVolume.cpp: In function ‘int ObjectVolumeAllStatesFromPyList(ObjectVolume*, PyObject*)’:
layer2/ObjectVolume.cpp:248:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectVolumeState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  248 |     for(int a = 0; a < I->State.size(); a++) {
      |                    ~~^~~~~~~~~~~~~~~~~
layer2/ObjectVolume.cpp: In function ‘int ObjectVolumeInvalidateMapName(ObjectVolume*, const char*, const char*)’:
layer2/ObjectVolume.cpp:313:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectVolumeState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  313 |   for(int a = 0; a < I->State.size(); a++) {
      |                  ~~^~~~~~~~~~~~~~~~~
layer2/ObjectVolume.cpp: In member function ‘virtual void ObjectVolume::invalidate(cRep_t, cRepInv_t, int)’:
layer2/ObjectVolume.cpp:341:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectVolumeState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  341 |     for(a = 0; a < I->State.size(); a++) {
      |                ~~^~~~~~~~~~~~~~~~~
layer2/ObjectVolume.cpp: In member function ‘virtual void ObjectVolume::update()’:
layer2/ObjectVolume.cpp:402:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectVolumeState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  402 |   for(int a = 0; a < I->State.size(); a++) {
      |                  ~~^~~~~~~~~~~~~~~~~
layer2/ObjectVolume.cpp:440:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<float>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  440 |         for (i = 0; i < vs->Ramp.size(); i += 5) {
      |                     ~~^~~~~~~~~~~~~~~~~
layer2/ObjectVolume.cpp: In member function ‘virtual void ObjectVolume::render(RenderInfo*)’:
layer2/ObjectVolume.cpp:759:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectVolumeState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  759 |   for(a = 0; a < I->State.size(); ++a) {
      |              ~~^~~~~~~~~~~~~~~~~
layer2/ObjectVolume.cpp: In function ‘ObjectVolume* ObjectVolumeFromXtalSym(PyMOLGlobals*, ObjectVolume*, ObjectMap*, CSymmetry*, int, int, float*, float*, float, int, float, float*, int)’:
layer2/ObjectVolume.cpp:1131:22: warning: comparison of integer expressions of different signedness: ‘std::vector<ObjectVolumeState>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
 1131 |   if(I->State.size() <= state) {
      |      ~~~~~~~~~~~~~~~~^~~~~~~~
layer2/ObjectVolume.cpp: In function ‘void ObjectVolumeRecomputeExtent(ObjectVolume*)’:
layer2/ObjectVolume.cpp:1232:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectVolumeState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1232 |   for(int a = 0; a < I->State.size(); a++) {
      |                  ~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/13/cassert:44,
                 from layer0/Field.h:24,
                 from layer0/Isosurf.h:24,
                 from layer2/ObjectMap.h:25,
                 from layer2/ObjectVolume.h:20,
                 from layer2/ObjectVolume.cpp:29:
layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = unsigned char; SizeTs = {int, int, int}]’:
layer0/Field.h:114:19:   required from ‘T& CField::get(SizeTs ...) [with T = unsigned char; SizeTs = {int, int, int}]’
layer2/ObjectVolume.cpp:534:44:   required from here
layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare]
  100 |     assert(sizeof...(pos) <= n_dim());
      |            ~~~~~~~~~~~~~~~^~~~~~~~~~
layer2/ObjectVolume.cpp: At global scope:
layer2/ObjectVolume.cpp:657:15: warning: ‘size_t createPreintegrationTexture(PyMOLGlobals*, const float*, int)’ defined but not used [-Wunused-function]
  657 | static size_t createPreintegrationTexture(PyMOLGlobals * G, const float *Table, const int count)
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~
layer2/ObjectVolume.cpp: In function ‘ObjectVolumeStateGetMapState(ObjectVolumeState*)’:
layer2/ObjectVolume.cpp:74:33: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 230 [-Wformat-truncation=]
   74 |       "ObjectVolume-Error: map '%s' has been deleted.\n", vs->MapName
      |                                 ^~
In file included from /usr/include/stdio.h:906,
                 from /usr/include/python3.11/Python.h:24,
                 from layer0/os_python.h:34,
                 from layer2/ObjectVolume.cpp:20:
In function ‘snprintf’,
    inlined from ‘ObjectVolumeStateGetMapState(ObjectVolumeState*)’ at layer2/ObjectVolume.cpp:73:5:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 46 and 301 bytes into a destination of size 255
   54 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   55 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   56 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/ObjectCallback.cpp -o build/temp.linux-x86_64-cpython-311/layer2/ObjectCallback.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/RepAngle.cpp -o build/temp.linux-x86_64-cpython-311/layer2/RepAngle.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/ObjectDist.cpp -o build/temp.linux-x86_64-cpython-311/layer2/ObjectDist.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer2/ObjectDist.cpp: In function ‘int ObjectDistMoveWithObject(ObjectDist*, ObjectMolecule*)’:
layer2/ObjectDist.cpp:111:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<pymol::copyable_ptr<DistSet> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  111 |   for (int i=0; i<I->DSet.size(); i++) {
      |                 ~^~~~~~~~~~~~~~~
layer2/ObjectDist.cpp: In function ‘void ObjectDistUpdateExtents(ObjectDist*)’:
layer2/ObjectDist.cpp:136:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<pymol::copyable_ptr<DistSet> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  136 |   for(int a = 0; a < I->DSet.size(); a++) {
      |                  ~~^~~~~~~~~~~~~~~~
layer2/ObjectDist.cpp: In function ‘PyObject* ObjectDistDSetAsPyList(ObjectDist*)’:
layer2/ObjectDist.cpp:148:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<pymol::copyable_ptr<DistSet> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  148 |   for(int a = 0; a < I->DSet.size(); a++) {
      |                  ~~^~~~~~~~~~~~~~~~
layer2/ObjectDist.cpp: In function ‘int ObjectDistDSetFromPyList(ObjectDist*, PyObject*)’:
layer2/ObjectDist.cpp:165:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<pymol::copyable_ptr<DistSet> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  165 |     for(int a = 0; a < I->DSet.size(); a++) {
      |                    ~~^~~~~~~~~~~~~~~~
layer2/ObjectDist.cpp: In member function ‘virtual void ObjectDist::update()’:
layer2/ObjectDist.cpp:241:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<pymol::copyable_ptr<DistSet> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  241 |   for(int a = 0; a < I->DSet.size(); a++)
      |                  ~~^~~~~~~~~~~~~~~~
layer2/ObjectDist.cpp: In function ‘void ObjectDistInvalidateRep(ObjectDist*, cRep_t)’:
layer2/ObjectDist.cpp:257:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<pymol::copyable_ptr<DistSet> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  257 |   for(a = 0; a < I->DSet.size(); a++)
      |              ~~^~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/RepCartoon.cpp -o build/temp.linux-x86_64-cpython-311/layer2/RepCartoon.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer2/RepCartoon.cpp: In function ‘Rep* RepCartoonNew(CoordSet*, int)’:
layer2/RepCartoon.cpp:3731:11: warning: ‘void* memset(void*, int, size_t)’ clearing an object of non-trivial type ‘class CCInOut’; use assignment or value-initialization instead [-Wclass-memaccess]
 3731 |     memset(car,      0, sizeof(*car)      * nAtIndex);
      |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer2/RepCartoon.cpp:44:7: note: ‘class CCInOut’ declared here
   44 | class CCInOut {
      |       ^~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/ObjectGadget.cpp -o build/temp.linux-x86_64-cpython-311/layer2/ObjectGadget.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In file included from layer2/CoordSet.h:24,
                 from layer2/RepCartoon.h:21,
                 from layer2/RepCartoon.cpp:27:
In function ‘SettingUniqueGetTypedValuePtr(PyMOLGlobals*, int, int, int, bool*)’,
    inlined from ‘SettingUniqueGetIfDefined<bool>(PyMOLGlobals*, int, int, bool*)bool’ at layer1/Setting.h:447:39,
    inlined from ‘AtomSettingGetIfDefined<bool, AtomInfoType const>(PyMOLGlobals*, AtomInfoType const*, int, bool*)bool’ at layer2/AtomInfo.h:496:33,
    inlined from ‘AtomSettingGetWD<bool, AtomInfoType const>(PyMOLGlobals*, AtomInfoType const*, int, bool)bool’ at layer2/AtomInfo.h:506:36,
    inlined from ‘ring_connector_visible(PyMOLGlobals*, AtomInfoType const*, AtomInfoType const*, bool)’ at layer2/RepCartoon.cpp:337:23:
layer1/Setting.h:436:11: warning: ‘out’ may be used uninitialized [-Wmaybe-uninitialized]
  436 |   int i = *out;
      |           ^~~~
In file included from layer2/ObjectMolecule.h:25,
                 from layer2/CoordSet.h:25:
layer2/AtomInfo.h: In function ‘ring_connector_visible(PyMOLGlobals*, AtomInfoType const*, AtomInfoType const*, bool)’:
layer2/AtomInfo.h:505:5: note: ‘out’ was declared here
  505 |   V out;
      |     ^~~
In function ‘SettingUniqueGetTypedValuePtr(PyMOLGlobals*, int, int, int, bool*)’,
    inlined from ‘SettingUniqueGetIfDefined<bool>(PyMOLGlobals*, int, int, bool*)bool’ at layer1/Setting.h:447:39,
    inlined from ‘AtomSettingGetIfDefined<bool, AtomInfoType const>(PyMOLGlobals*, AtomInfoType const*, int, bool*)bool’ at layer2/AtomInfo.h:496:33,
    inlined from ‘AtomSettingGetWD<bool, AtomInfoType const>(PyMOLGlobals*, AtomInfoType const*, int, bool)bool’ at layer2/AtomInfo.h:506:36,
    inlined from ‘ring_connector_visible(PyMOLGlobals*, AtomInfoType const*, AtomInfoType const*, bool)’ at layer2/RepCartoon.cpp:338:23:
layer1/Setting.h:436:11: warning: ‘out’ may be used uninitialized [-Wmaybe-uninitialized]
  436 |   int i = *out;
      |           ^~~~
layer2/AtomInfo.h: In function ‘ring_connector_visible(PyMOLGlobals*, AtomInfoType const*, AtomInfoType const*, bool)’:
layer2/AtomInfo.h:505:5: note: ‘out’ was declared here
  505 |   V out;
      |     ^~~
layer2/RepCartoon.cpp: In function ‘do_ring(PyMOLGlobals*, nuc_acid_data*, int, int*, ObjectMolecule*, CoordSet*, float, CGO*, int, float, int, int, int, float, float, int*, float*, float)’:
layer2/RepCartoon.cpp:1007:65: warning: ‘i’ may be used uninitialized [-Wmaybe-uninitialized]
 1007 |                     float ladder_alpha = 1.0f - AtomSettingGetWD(G, ai_i[i], cSetting_cartoon_transparency, 1.0f - alpha);
      |                                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer2/RepCartoon.cpp:461:11: note: ‘i’ was declared here
  461 |       int i;
      |           ^
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/ObjectGadgetRamp.cpp -o build/temp.linux-x86_64-cpython-311/layer2/ObjectGadgetRamp.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In file included from layer1/Symmetry.h:26,
                 from layer2/CoordSet.h:22:
In member function ‘pymol::vla<AtomInfoType>::operator+<int>(int)AtomInfoType*’,
    inlined from ‘GenerateRepCartoonProcessCylindricalHelices(PyMOLGlobals*, ObjectMolecule*, CoordSet*, CGO*, CExtrude*, int, int*, float*, float*, float*, CCInOut const*, int*, float*, int, int, float, float)’ at layer2/RepCartoon.cpp:1739:34,
    inlined from ‘GenerateRepCartoonCGO(CoordSet*, ObjectMolecule*, nuc_acid_data*, short, float*, int, float*, float*, float*, CCInOut const*, int*, int*, int*, float*, float)’ at layer2/RepCartoon.cpp:2553:53:
layer0/vla.h:118:60: warning: ‘atom_index2’ may be used uninitialized [-Wmaybe-uninitialized]
  118 |   template <typename S> T* operator+(S i) { return m_vla + i; }
      |                                                            ^
layer2/RepCartoon.cpp: In function ‘GenerateRepCartoonCGO(CoordSet*, ObjectMolecule*, nuc_acid_data*, short, float*, int, float*, float*, float*, CCInOut const*, int*, int*, int*, float*, float)’:
layer2/RepCartoon.cpp:1593:20: note: ‘atom_index2’ was declared here
 1593 |   int atom_index1, atom_index2, *s,
      |                    ^~~~~~~~~~~
layer2/RepCartoon.cpp: In function ‘RepCartoonNew(CoordSet*, int)’:
layer2/RepCartoon.cpp:3206:23: warning: ‘MEM[(float *)&t2]’ may be used uninitialized [-Wmaybe-uninitialized]
 3206 |   float t0[3], t1[3], t2[3];
      |                       ^~
layer2/RepCartoon.cpp:3206:23: warning: ‘MEM[(float *)&t2 + 4B]’ may be used uninitialized [-Wmaybe-uninitialized]
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/ObjectGroup.cpp -o build/temp.linux-x86_64-cpython-311/layer2/ObjectGroup.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/RepCylBond.cpp -o build/temp.linux-x86_64-cpython-311/layer2/RepCylBond.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/ObjectMap.cpp -o build/temp.linux-x86_64-cpython-311/layer2/ObjectMap.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer2/ObjectMap.cpp: In function ‘int ObjectMapValidXtal(ObjectMap*, int)’:
layer2/ObjectMap.cpp:133:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  133 |   if((state >= 0) && (state < I->State.size())) {
      |                       ~~~~~~^~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp: In function ‘pymol::Result<> ObjectMapTrim(ObjectMap*, int, float*, float*, int)’:
layer2/ObjectMap.cpp:914:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  914 |   } else if((state >= 0) && (state < I->State.size()) && (I->State[state].Active)) {
      |                              ~~~~~~^~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp: In function ‘pymol::Result<> ObjectMapDouble(ObjectMap*, int)’:
layer2/ObjectMap.cpp:931:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  931 |   } else if((state >= 0) && (state < I->State.size()) && (I->State[state].Active)) {
      |                              ~~~~~~^~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp: In function ‘pymol::Result<> ObjectMapHalve(ObjectMap*, int, int)’:
layer2/ObjectMap.cpp:946:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  946 |   } else if((state >= 0) && (state < I->State.size()) && (I->State[state].Active)) {
      |                              ~~~~~~^~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp: In function ‘void ObjectMapRegeneratePoints(ObjectMap*)’:
layer2/ObjectMap.cpp:1189:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1189 |   for (i=0; i<om->State.size();i++){
      |             ~^~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp: In function ‘PyObject* ObjectMapAllStatesAsPyList(ObjectMap*)’:
layer2/ObjectMap.cpp:1279:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1279 |   for(a = 0; a < I->State.size(); a++) {
      |              ~~^~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp: In function ‘int ObjectMapAllStatesFromPyList(ObjectMap*, PyObject*)’:
layer2/ObjectMap.cpp:1437:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1437 |     for(a = 0; a < I->State.size(); a++) {
      |                ~~^~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp: In function ‘int ObjectMapNewCopy(PyMOLGlobals*, const ObjectMap*, ObjectMap**, int, int)’:
layer2/ObjectMap.cpp:1509:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1509 |       for(state = 0; state < src->State.size(); state++) {
      |                      ~~~~~~^~~~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp:1518:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1518 |       if(source_state < src->State.size()) {
      |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp: In function ‘ObjectMapState* ObjectMapStatePrime(ObjectMap*, int)’:
layer2/ObjectMap.cpp:1535:22: warning: comparison of integer expressions of different signedness: ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
 1535 |   if(I->State.size() <= state) {
      |      ~~~~~~~~~~~~~~~~^~~~~~~~
layer2/ObjectMap.cpp: In function ‘void ObjectMapUpdateExtents(ObjectMap*)’:
layer2/ObjectMap.cpp:1548:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1548 |   for(a = 0; a < I->State.size(); a++) {
      |              ~~^~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp: In member function ‘virtual void ObjectMap::invalidate(cRep_t, cRepInv_t, int)’:
layer2/ObjectMap.cpp:1674:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1674 |     for(a = 0; a < I->State.size(); a++) {
      |                ~~^~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp: In function ‘int ObjectMapCCP4StrToMap(ObjectMap*, char*, int, int, int, int)’:
layer2/ObjectMap.cpp:2297:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
 2297 |   if(bytes < 256 * sizeof(int)) {
      |      ~~~~~~^~~~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp:2307:22: warning: comparison of integer expressions of different signedness: ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
 2307 |   if(I->State.size() <= state) {
      |      ~~~~~~~~~~~~~~~~^~~~~~~~
layer2/ObjectMap.cpp: In function ‘int ObjectMapPHIStrToMap(ObjectMap*, char*, int, int, int)’:
layer2/ObjectMap.cpp:2942:22: warning: comparison of integer expressions of different signedness: ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
 2942 |   if(I->State.size() <= state) {
      |      ~~~~~~~~~~~~~~~~^~~~~~~~
layer2/ObjectMap.cpp: In function ‘int ObjectMapXPLORStrToMap(ObjectMap*, char*, int, int)’:
layer2/ObjectMap.cpp:3216:22: warning: comparison of integer expressions of different signedness: ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
 3216 |   if(I->State.size() <= state) {
      |      ~~~~~~~~~~~~~~~~^~~~~~~~
layer2/ObjectMap.cpp: In function ‘int ObjectMapFLDStrToMap(ObjectMap*, char*, int, int, int)’:
layer2/ObjectMap.cpp:3437:22: warning: comparison of integer expressions of different signedness: ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
 3437 |   if(I->State.size() <= state) {
      |      ~~~~~~~~~~~~~~~~^~~~~~~~
layer2/ObjectMap.cpp: In function ‘int ObjectMapBRIXStrToMap(ObjectMap*, char*, int, int, int)’:
layer2/ObjectMap.cpp:3766:22: warning: comparison of integer expressions of different signedness: ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
 3766 |   if(I->State.size() <= state) {
      |      ~~~~~~~~~~~~~~~~^~~~~~~~
layer2/ObjectMap.cpp: In function ‘int ObjectMapGRDStrToMap(ObjectMap*, char*, int, int, int)’:
layer2/ObjectMap.cpp:4172:22: warning: comparison of integer expressions of different signedness: ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
 4172 |   if(I->State.size() <= state) {
      |      ~~~~~~~~~~~~~~~~^~~~~~~~
layer2/ObjectMap.cpp: In function ‘ObjectMap* ObjectMapLoadCCP4(PyMOLGlobals*, ObjectMap*, const char*, int, int, int, int, int)’:
layer2/ObjectMap.cpp:4694:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 4694 |       if(state < I->State.size()) {
      |          ~~~~~~^~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp: In function ‘int ObjectMapACNTStrToMap(ObjectMap*, char*, int, int, int)’:
layer2/ObjectMap.cpp:5245:22: warning: comparison of integer expressions of different signedness: ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
 5245 |   if(I->State.size() <= state) {
      |      ~~~~~~~~~~~~~~~~^~~~~~~~
layer2/ObjectMap.cpp: In function ‘ObjectMap* ObjectMapLoadXPLOR(PyMOLGlobals*, ObjectMap*, const char*, int, int, int)’:
layer2/ObjectMap.cpp:5557:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 5557 |         if(state < I->State.size()) {
      |            ~~~~~~^~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp: In function ‘ObjectMap* ObjectMapLoadChemPyBrick(PyMOLGlobals*, ObjectMap*, PyObject*, int, int, int)’:
layer2/ObjectMap.cpp:5711:24: warning: comparison of integer expressions of different signedness: ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
 5711 |     if(I->State.size() <= state) {
      |        ~~~~~~~~~~~~~~~~^~~~~~~~
layer2/ObjectMap.cpp: In function ‘ObjectMap* ObjectMapLoadChemPyMap(PyMOLGlobals*, ObjectMap*, PyObject*, int, int, int)’:
layer2/ObjectMap.cpp:5809:24: warning: comparison of integer expressions of different signedness: ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
 5809 |     if(I->State.size() <= state) {
      |        ~~~~~~~~~~~~~~~~^~~~~~~~
In file included from /usr/include/c++/13/cassert:44,
                 from layer0/Field.h:24,
                 from layer0/Isosurf.h:24,
                 from layer2/ObjectMap.h:25,
                 from layer2/ObjectMap.cpp:27:
layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = float; SizeTs = {int, int, int, int}]’:
layer2/ObjectMap.cpp:198:30:   required from here
layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare]
  100 |     assert(sizeof...(pos) <= n_dim());
      |            ~~~~~~~~~~~~~~~^~~~~~~~~~
layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = float; SizeTs = {int, int, int}]’:
layer2/ObjectMap.cpp:1605:14:   required from here
layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare]
layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = int; SizeTs = {int, int, int}]’:
layer0/Field.h:114:19:   required from ‘T& CField::get(SizeTs ...) [with T = int; SizeTs = {int, int, int}]’
layer2/ObjectMap.cpp:5967:46:   required from here
layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare]
In file included from /usr/lib64/python3.11/site-packages/numpy/core/include/numpy/ndarrayobject.h:21,
                 from /usr/lib64/python3.11/site-packages/numpy/core/include/numpy/arrayobject.h:5,
                 from layer0/os_numpy.h:8,
                 from layer2/ObjectMap.cpp:22:
/usr/lib64/python3.11/site-packages/numpy/core/include/numpy/__multiarray_api.h: At global scope:
/usr/lib64/python3.11/site-packages/numpy/core/include/numpy/__multiarray_api.h:1477:1: warning: ‘int _import_array()’ defined but not used [-Wunused-function]
 1477 | _import_array(void)
      | ^~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/RepDihedral.cpp -o build/temp.linux-x86_64-cpython-311/layer2/RepDihedral.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/RepDistDash.cpp -o build/temp.linux-x86_64-cpython-311/layer2/RepDistDash.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer2/ObjectMap.cpp: In function ‘ObjectMapDump(ObjectMap const*, char const*, int, int)’:
layer2/ObjectMap.cpp:5982:24: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 239 [-Wformat-truncation=]
 5982 |       " ObjectMapDump: %s written to %s\n", om->Name, fname ENDFB(om->G);
      |                        ^~
In file included from /usr/include/stdio.h:906,
                 from /usr/include/python3.11/Python.h:24,
                 from layer0/os_python.h:34,
                 from layer2/ObjectMap.cpp:21:
In function ‘snprintf’,
    inlined from ‘ObjectMapDump(ObjectMap const*, char const*, int, int)’ at layer2/ObjectMap.cpp:5981:5:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output 30 or more bytes (assuming 285) into a destination of size 255
   54 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   55 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   56 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/RepDistLabel.cpp -o build/temp.linux-x86_64-cpython-311/layer2/RepDistLabel.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer2/ObjectMap.cpp: In function ‘ObjectMapGRDStrToMap(ObjectMap*, char*, int, int, int) [clone .isra.0]’:
layer2/ObjectMap.cpp:4290:18: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 243 [-Wformat-truncation=]
 4290 |     " ObjectMap: %s\n", cc ENDFB(I->G);
      |                  ^~     ~~
In function ‘snprintf’,
    inlined from ‘ObjectMapGRDStrToMap(ObjectMap*, char*, int, int, int) [clone .isra.0]’ at layer2/ObjectMap.cpp:4289:3:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 14 and 1037 bytes into a destination of size 255
   54 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   55 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   56 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp: In function ‘ObjectMapGRDStrToMap(ObjectMap*, char*, int, int, int) [clone .isra.0]’:
layer2/ObjectMap.cpp:4290:18: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 243 [-Wformat-truncation=]
 4290 |     " ObjectMap: %s\n", cc ENDFB(I->G);
      |                  ^~     ~~
In function ‘snprintf’,
    inlined from ‘ObjectMapGRDStrToMap(ObjectMap*, char*, int, int, int) [clone .isra.0]’ at layer2/ObjectMap.cpp:4289:3:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 14 and 1037 bytes into a destination of size 255
   54 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   55 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   56 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp: In function ‘ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, char const*, int, int, int, int)’:
layer2/ObjectMap.cpp:2961:22: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=]
 2961 |       " PHIStrToMap: %s\n", cc ENDFB(I->G);
      |                      ^~     ~~
In function ‘snprintf’,
    inlined from ‘ObjectMapPHIStrToMap(ObjectMap*, char*, int, int, int)’ at layer2/ObjectMap.cpp:2960:5,
    inlined from ‘ObjectMapReadPHIStr(PyMOLGlobals*, ObjectMap*, char*, int, int, int)’ at layer2/ObjectMap.cpp:4803:25,
    inlined from ‘ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, char const*, int, int, int, int)’ at layer2/ObjectMap.cpp:4835:28:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 16 and 1039 bytes into a destination of size 255
   54 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   55 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   56 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp: In function ‘ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, char const*, int, int, int, int)’:
layer2/ObjectMap.cpp:2970:22: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=]
 2970 |       " PHIStrToMap: %s\n", cc ENDFB(I->G);
      |                      ^~     ~~
In function ‘snprintf’,
    inlined from ‘ObjectMapPHIStrToMap(ObjectMap*, char*, int, int, int)’ at layer2/ObjectMap.cpp:2969:5,
    inlined from ‘ObjectMapReadPHIStr(PyMOLGlobals*, ObjectMap*, char*, int, int, int)’ at layer2/ObjectMap.cpp:4803:25,
    inlined from ‘ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, char const*, int, int, int, int)’ at layer2/ObjectMap.cpp:4835:28:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 16 and 1039 bytes into a destination of size 255
   54 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   55 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   56 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp: In function ‘ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, char const*, int, int, int, int)’:
layer2/ObjectMap.cpp:2976:22: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=]
 2976 |       " PHIStrToMap: %s\n", cc ENDFB(I->G);
      |                      ^~     ~~
In function ‘snprintf’,
    inlined from ‘ObjectMapPHIStrToMap(ObjectMap*, char*, int, int, int)’ at layer2/ObjectMap.cpp:2975:5,
    inlined from ‘ObjectMapReadPHIStr(PyMOLGlobals*, ObjectMap*, char*, int, int, int)’ at layer2/ObjectMap.cpp:4803:25,
    inlined from ‘ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, char const*, int, int, int, int)’ at layer2/ObjectMap.cpp:4835:28:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 16 and 1039 bytes into a destination of size 255
   54 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   55 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   56 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp: In function ‘ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, char const*, int, int, int, int)’:
layer2/ObjectMap.cpp:3058:22: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=]
 3058 |       " PHIStrToMap: %s\n", cc ENDFB(I->G);
      |                      ^~     ~~
In function ‘snprintf’,
    inlined from ‘ObjectMapPHIStrToMap(ObjectMap*, char*, int, int, int)’ at layer2/ObjectMap.cpp:3057:5,
    inlined from ‘ObjectMapReadPHIStr(PyMOLGlobals*, ObjectMap*, char*, int, int, int)’ at layer2/ObjectMap.cpp:4803:25,
    inlined from ‘ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, char const*, int, int, int, int)’ at layer2/ObjectMap.cpp:4835:28:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 16 and 1039 bytes into a destination of size 255
   54 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   55 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   56 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/RepDot.cpp -o build/temp.linux-x86_64-cpython-311/layer2/RepDot.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/ObjectMesh.cpp -o build/temp.linux-x86_64-cpython-311/layer2/ObjectMesh.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer2/RepDot.cpp: In function ‘RepDotDoNew(CoordSet*, cRepDot_t, int)’:
layer2/RepDot.cpp:436:17: warning: ‘vn’ may be used uninitialized [-Wmaybe-uninitialized]
  436 |         *(vn++) = sp->dot[b][2];
      |         ~~~~~~~~^~~~~~~~~~~~~~~
layer2/RepDot.cpp:263:14: note: ‘vn’ was declared here
  263 |   float *v, *vn;
      |              ^~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/RepEllipsoid.cpp -o build/temp.linux-x86_64-cpython-311/layer2/RepEllipsoid.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer2/ObjectMesh.cpp: In member function ‘ObjectMesh::update()’:
layer2/ObjectMesh.cpp:502:41: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 226 [-Wformat-truncation=]
  502 |           "ObjectMeshUpdate-Error: map '%s' has been deleted.\n", ms->MapName
      |                                         ^~
In file included from layer1/Ortho.h:32,
                 from layer1/Scene.h:23,
                 from layer2/ObjectMesh.cpp:33:
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 50 and 305 bytes into a destination of size 255
  274 |     (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |               ^
layer2/ObjectMesh.cpp:535:40: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 232 [-Wformat-truncation=]
  535 |               " ObjectMesh: updating \"%s\".\n", I->Name ENDFB(G);
      |                                        ^~
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 27 and 282 bytes into a destination of size 255
  274 |     (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |               ^
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/RepLabel.cpp -o build/temp.linux-x86_64-cpython-311/layer2/RepLabel.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer2/ObjectMesh.cpp: In function ‘ObjectMeshDump(ObjectMesh*, char const*, int, int)’:
layer2/ObjectMesh.cpp:329:27: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 238 [-Wformat-truncation=]
  329 |         " ObjectMeshDump: %s written to %s\n", I->Name, fname ENDFB(I->G);
      |                           ^~
layer0/Feedback.h:274:15: note: ‘snprintf’ output 31 or more bytes (assuming 286) into a destination of size 255
  274 |     (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |               ^
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/ObjectMolecule.cpp -o build/temp.linux-x86_64-cpython-311/layer2/ObjectMolecule.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer2/ObjectMolecule.cpp: In function ‘int ObjectMoleculeFillOpenValences(ObjectMolecule*, int)’:
layer2/ObjectMolecule.cpp:3531:14: warning: comparison of integer expressions of different signedness: ‘const unsigned int’ and ‘signed char’ [-Wsign-compare]
 3531 |       if((nn >= ai->valence) || (!flag))
      |           ~~~^~~~~~~~~~~~~~
layer2/ObjectMolecule.cpp: In function ‘pymol::Result<> ObjectMoleculeAddBondByIndices(ObjectMolecule*, unsigned int, unsigned int, int)’:
layer2/ObjectMolecule.cpp:4328:12: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
 4328 |   if (atm1 >= I->NAtom || atm2 >= I->NAtom) {
      |       ~~~~~^~~~~~~~~~~
layer2/ObjectMolecule.cpp:4328:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
 4328 |   if (atm1 >= I->NAtom || atm2 >= I->NAtom) {
      |                           ~~~~~^~~~~~~~~~~
layer2/ObjectMolecule.cpp: In member function ‘bool ObjectMolecule::atomHasAnyCoordinates(size_t) const’:
layer2/ObjectMolecule.cpp:11713:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare]
11713 |   for (size_t i = 0; i < NCSet; ++i) {
      |                      ~~^~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/RepMesh.cpp -o build/temp.linux-x86_64-cpython-311/layer2/RepMesh.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In file included from /usr/include/c++/13/cassert:44,
                 from layer0/Field.h:24,
                 from layer0/Isosurf.h:24,
                 from layer2/RepMesh.cpp:28:
layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = float; SizeTs = {int, int, int}]’:
layer2/RepMesh.cpp:970:27:   required from here
layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare]
  100 |     assert(sizeof...(pos) <= n_dim());
      |            ~~~~~~~~~~~~~~~^~~~~~~~~~
layer2/ObjectMolecule.cpp: In function ‘ObjectMoleculeMOLStr2CoordSet(PyMOLGlobals*, char const*, AtomInfoType**, char const**) [clone .constprop.0]’:
layer2/ObjectMolecule.cpp:7579:37: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 224 [-Wformat-truncation=]
 7579 |     " ObjMolMOLStr2CoordSet: title '%s'\n", nameTmp ENDFB(G)
      |                                     ^~      ~~~~~~~
In file included from layer1/Ortho.h:32,
                 from layer2/ObjectMolecule.cpp:31:
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 34 and 289 bytes into a destination of size 255
  274 |     (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |               ^
layer2/ObjectMolecule.cpp:7627:16: warning: ‘strncpy’ output may be truncated copying 4 bytes from a string of length 1023 [-Wstringop-truncation]
 7627 |         strncpy(atInfo[a].elem, cc, cElemNameLen);
      |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer2/RepMesh.cpp:24:
layer2/RepMesh.cpp: In function ‘RepMeshNew(CoordSet*, int)’:
layer2/RepMesh.cpp:1053:13: warning: ‘field’ may be used uninitialized [-Wmaybe-uninitialized]
 1053 |     DeleteP(field);
      |             ^~~~~
layer2/RepMesh.cpp:715:13: note: ‘field’ was declared here
  715 |   Isofield *field;
      |             ^~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/RepNonbonded.cpp -o build/temp.linux-x86_64-cpython-311/layer2/RepNonbonded.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer2/ObjectMolecule.cpp: In member function ‘ObjectMolecule::update()’:
layer2/ObjectMolecule.cpp:10605:82: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size between 181 and 191 [-Wformat-truncation=]
10605 |               " ObjectMolecule-DEBUG: updating representations for state %d of \"%s\".\n",
      |                                                                                  ^~
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 68 and 333 bytes into a destination of size 255
  274 |     (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |               ^
layer2/ObjectMolecule.cpp: In function ‘ObjectMoleculeMoveAtom(ObjectMolecule*, int, int, float const*, int, int)’:
layer2/ObjectMolecule.cpp:10731:43: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 1004 [-Wformat-overflow=]
10731 |       sprintf(line, "cmd.translate_atom(\"%s\",%15.9f,%15.9f,%15.9f,%d,%d,%d)\n",
      |                                           ^~
10732 |               buffer, v[0], v[1], v[2], state + 1, mode, 0);
      |               ~~~~~~                       
layer2/ObjectMolecule.cpp:10731:21: note: directive argument in the range [-2147483647, 2147483647]
10731 |       sprintf(line, "cmd.translate_atom(\"%s\",%15.9f,%15.9f,%15.9f,%d,%d,%d)\n",
      |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer2/ObjectMolecule.cpp:10731:14: note: ‘sprintf’ output between 78 and 2036 bytes into a destination of size 1024
10731 |       sprintf(line, "cmd.translate_atom(\"%s\",%15.9f,%15.9f,%15.9f,%d,%d,%d)\n",
      |       ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
10732 |               buffer, v[0], v[1], v[2], state + 1, mode, 0);
      |               ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/RepNonbondedSphere.cpp -o build/temp.linux-x86_64-cpython-311/layer2/RepNonbondedSphere.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/RepRibbon.cpp -o build/temp.linux-x86_64-cpython-311/layer2/RepRibbon.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer2/RepRibbon.cpp: In function ‘RepRibbonNew(CoordSet*, int)’:
layer2/RepRibbon.cpp:378:15: warning: ‘MEM <vector(2) float> [(float *)_717]’ may be used uninitialized [-Wmaybe-uninitialized]
  378 |     *(v1++) = *(v++);           /* first segment */
      |               ^~~~~~
layer2/RepRibbon.cpp:380:15: warning: ‘MEM[(float *)_717 + 8B]’ may be used uninitialized [-Wmaybe-uninitialized]
  380 |     *(v1++) = *(v++);
      |               ^~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/RepSphere.cpp -o build/temp.linux-x86_64-cpython-311/layer2/RepSphere.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In function ‘ObjectMoleculeXYZStr2CoordSet(PyMOLGlobals*, char const*, AtomInfoType**, char const**)’,
    inlined from ‘ObjectMoleculeReadStr(PyMOLGlobals*, ObjectMolecule*, char const**, cLoadType_t, int, int, int, int, char*, short, _OVLexicon*)’ at layer2/ObjectMolecule.cpp:8551:43:
layer2/ObjectMolecule.cpp:2898:16: warning: ‘strncpy’ output may be truncated copying 4 bytes from a string of length 1023 [-Wstringop-truncation]
 2898 |         strncpy(ai->elem, cc, cElemNameLen);
      |         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/ObjectMolecule2.cpp -o build/temp.linux-x86_64-cpython-311/layer2/ObjectMolecule2.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/RepSphereGenerate.cpp -o build/temp.linux-x86_64-cpython-311/layer2/RepSphereGenerate.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer2/ObjectMolecule2.cpp: In function ‘bool ObjectMoleculeConnect(ObjectMolecule*, int&, pymol::vla<BondType>&, CoordSet*, int, int, bool)’:
layer2/ObjectMolecule2.cpp:3750:28: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
 3750 |     for (unsigned i = 0; i < cs->NIndex; ++i) {
      |                          ~~^~~~~~~~~~~~
layer2/ObjectMolecule2.cpp: In lambda function:
layer2/ObjectMolecule2.cpp:3779:15: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘const int’ [-Wsign-compare]
 3779 |         if (i <= j && !symop)
      |             ~~^~~~
layer2/ObjectMolecule2.cpp: In function ‘bool ObjectMoleculeConnect(ObjectMolecule*, int&, pymol::vla<BondType>&, CoordSet*, int, int, bool)’:
layer2/ObjectMolecule2.cpp:3884:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
 3884 |       for (unsigned i = 0; i < cs->NIndex; ++i) {
      |                            ~~^~~~~~~~~~~~
layer2/ObjectMolecule2.cpp:3900:28: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
 3900 |     for (unsigned a = 0; a < cs->NTmpBond; ++a) {
      |                          ~~^~~~~~~~~~~~~~
layer2/ObjectMolecule2.cpp:3950:28: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
 3950 |     for (unsigned a = 0; a < cs->NTmpLinkBond; ++a) {
      |                          ~~^~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/RepSphereImmediate.cpp -o build/temp.linux-x86_64-cpython-311/layer2/RepSphereImmediate.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/RepSurface.cpp -o build/temp.linux-x86_64-cpython-311/layer2/RepSurface.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer2/ObjectMolecule2.cpp: In function ‘ObjectMoleculeAddPseudoatom(ObjectMolecule*, int, char const*, char const*, char const*, char const*, char const*, char const*, float, int, float, float, char const*, float const*, int, int, int, int)’:
layer2/ObjectMolecule2.cpp:335:27: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 238 [-Wformat-truncation=]
  335 |         " ObjMol: created %s/%s/%s/%s`%d%c/%s\n",
      |                           ^~
In file included from /usr/include/stdio.h:906,
                 from /usr/include/python3.11/Python.h:24,
                 from layer0/os_python.h:34,
                 from layer2/ObjectMolecule2.cpp:24:
In function ‘snprintf’,
    inlined from ‘ObjectMoleculeAddPseudoatom(ObjectMolecule*, int, char const*, char const*, char const*, char const*, char const*, char const*, float, int, float, float, char const*, float const*, int, int, int, int)’ at layer2/ObjectMolecule2.cpp:334:7:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 26 and 291 bytes into a destination of size 255
   54 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   55 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   56 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
layer2/RepSurface.cpp: In function ‘void RepSurfaceSmoothEdges(RepSurface*)’:
layer2/RepSurface.cpp:4403:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 4403 |     for (auto j = 0; j < edges[i].size(); j += 3) {
      |                      ~~^~~~~~~~~~~~~~~~~
layer2/RepSurface.cpp:4415:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 4415 |     for (auto j = 0; j < edges[i].size(); j += 3) {
      |                      ~~^~~~~~~~~~~~~~~~~
layer2/RepSurface.cpp:4426:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 4426 |     for (auto i = 0; i < unique_edges.size(); i += 2) {
      |                      ~~^~~~~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/ObjectMolecule3.cpp -o build/temp.linux-x86_64-cpython-311/layer2/ObjectMolecule3.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer2/ObjectMolecule3.cpp: In function ‘std::vector<int> ObjectMoleculeGetMolMappingVec(const ObjectMolecule&)’:
layer2/ObjectMolecule3.cpp:42:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare]
   42 |   for (size_t b = 0; b < objmol.NBond; ++b) {
      |                      ~~^~~~~~~~~~~~~~
layer2/ObjectMolecule3.cpp: In function ‘void ObjectMoleculePBCUnwrap(ObjectMolecule&, bool)’:
layer2/ObjectMolecule3.cpp:151:34: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  151 |       for (unsigned atm = 0; atm != objmol.NAtom; ++atm) {
      |                              ~~~~^~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/ObjectSlice.cpp -o build/temp.linux-x86_64-cpython-311/layer2/ObjectSlice.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer2/ObjectSlice.cpp: In function ‘PyObject* ObjectSliceAllStatesAsPyList(ObjectSlice*)’:
layer2/ObjectSlice.cpp:78:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectSliceState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   78 |   for(a = 0; a < I->State.size(); a++) {
      |              ~~^~~~~~~~~~~~~~~~~
layer2/ObjectSlice.cpp: In member function ‘virtual void ObjectSlice::invalidate(cRep_t, cRepInv_t, int)’:
layer2/ObjectSlice.cpp:210:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectSliceState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  210 |   for(a = 0; a < State.size(); a++) {
      |              ~~^~~~~~~~~~~~~~
layer2/ObjectSlice.cpp: In member function ‘virtual void ObjectSlice::update()’:
layer2/ObjectSlice.cpp:633:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectSliceState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  633 |   for(a = 0; a < I->State.size(); a++) {
      |              ~~^~~~~~~~~~~~~~~~~
layer2/ObjectSlice.cpp: In function ‘void ObjectSliceDrag(ObjectSlice*, int, int, float*, float*, float*)’:
layer2/ObjectSlice.cpp:679:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectSliceState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  679 |     if(state < I->State.size())
      |        ~~~~~~^~~~~~~~~~~~~~~~~
layer2/ObjectSlice.cpp: In function ‘int ObjectSliceGetVertex(ObjectSlice*, int, int, float*)’:
layer2/ObjectSlice.cpp:750:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectSliceState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  750 |     if(state < I->State.size())
      |        ~~~~~~^~~~~~~~~~~~~~~~~
layer2/ObjectSlice.cpp: In member function ‘virtual void ObjectSlice::render(RenderInfo*)’:
layer2/ObjectSlice.cpp:925:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectSliceState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  925 |       if(state < I->State.size())
      |          ~~~~~~^~~~~~~~~~~~~~~~~
layer2/ObjectSlice.cpp:967:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectSliceState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  967 |         if(cur_state >= I->State.size())
      |            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~
layer2/ObjectSlice.cpp:981:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectSliceState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  981 |     if(state < I->State.size())
      |        ~~~~~~^~~~~~~~~~~~~~~~~
layer2/ObjectSlice.cpp:1226:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectSliceState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1226 |     if(cur_state >= I->State.size())
      |        ~~~~~~~~~~^~~~~~~~~~~~~~~~~~
layer2/ObjectSlice.cpp: In function ‘ObjectSliceState* ObjectSliceStateGetActive(ObjectSlice*, int)’:
layer2/ObjectSlice.cpp:1244:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectSliceState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1244 |     if(state < I->State.size()) {
      |        ~~~~~~^~~~~~~~~~~~~~~~~
layer2/ObjectSlice.cpp: In function ‘ObjectSlice* ObjectSliceFromMap(PyMOLGlobals*, ObjectSlice*, ObjectMap*, int, int)’:
layer2/ObjectSlice.cpp:1285:22: warning: comparison of integer expressions of different signedness: ‘std::vector<ObjectSliceState>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
 1285 |   if(I->State.size() <= state) {
      |      ~~~~~~~~~~~~~~~~^~~~~~~~
layer2/ObjectSlice.cpp: In function ‘void ObjectSliceRecomputeExtent(ObjectSlice*)’:
layer2/ObjectSlice.cpp:1362:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectSliceState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1362 |   for(a = 0; a < I->State.size(); a++) {
      |              ~~^~~~~~~~~~~~~~~~~
layer2/ObjectSlice.cpp: In member function ‘ObjectSlice::update()’:
layer2/ObjectSlice.cpp:639:42: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 225 [-Wformat-truncation=]
  639 |           "ObjectSliceUpdate-Error: map '%s' has been deleted.\n", oss->MapName
      |                                          ^~
In file included from layer1/Ortho.h:32,
                 from layer1/Scene.h:23,
                 from layer2/ObjectSlice.cpp:34:
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 51 and 306 bytes into a destination of size 255
  274 |     (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |               ^
layer2/ObjectSlice.cpp:650:39: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 231 [-Wformat-truncation=]
  650 |             " ObjectSlice: updating \"%s\".\n", I->Name ENDFB(I->G);
      |                                       ^~
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 28 and 283 bytes into a destination of size 255
  274 |     (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |               ^
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/RepWireBond.cpp -o build/temp.linux-x86_64-cpython-311/layer2/RepWireBond.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/ObjectSurface.cpp -o build/temp.linux-x86_64-cpython-311/layer2/ObjectSurface.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer2/ObjectSurface.cpp: In function ‘PyObject* ObjectSurfaceAllStatesAsPyList(ObjectSurface*)’:
layer2/ObjectSurface.cpp:83:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectSurfaceState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   83 |   for(int a = 0; a < I->State.size(); a++) {
      |                  ~~^~~~~~~~~~~~~~~~~
layer2/ObjectSurface.cpp: In function ‘void ObjectSurfaceDump(ObjectSurface*, const char*, int, int)’:
layer2/ObjectSurface.cpp:236:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectSurfaceState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  236 |     if(state < I->State.size()) {
      |        ~~~~~~^~~~~~~~~~~~~~~~~
layer2/ObjectSurface.cpp: In member function ‘virtual void ObjectSurface::invalidate(cRep_t, cRepInv_t, int)’:
layer2/ObjectSurface.cpp:281:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectSurfaceState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  281 |     for(int a = 0; a < I->State.size(); a++) {
      |                    ~~^~~~~~~~~~~~~~~~~
layer2/ObjectSurface.cpp: In function ‘int ObjectSurfaceInvalidateMapName(ObjectSurface*, const char*, const char*)’:
layer2/ObjectSurface.cpp:311:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectSurfaceState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  311 |   for(int a = 0; a < I->State.size(); a++) {
      |                  ~~^~~~~~~~~~~~~~~~~
layer2/ObjectSurface.cpp: In function ‘ObjectSurface* ObjectSurfaceFromBox(PyMOLGlobals*, ObjectSurface*, ObjectMap*, int, int, float*, float*, float, cIsosurfaceMode, float, pymol::vla<float>&&, cIsosurfaceSide, int)’:
layer2/ObjectSurface.cpp:1029:22: warning: comparison of integer expressions of different signedness: ‘std::vector<ObjectSurfaceState>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
 1029 |   if(I->State.size() <= state) {
      |      ~~~~~~~~~~~~~~~~^~~~~~~~
layer2/ObjectSurface.cpp: In function ‘int ObjectSurfaceSetLevel(ObjectSurface*, float, int, int)’:
layer2/ObjectSurface.cpp:1125:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectSurfaceState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1125 |     for(int a = 0; a < I->State.size(); a++) {
      |                    ~~^~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/Sculpt.cpp -o build/temp.linux-x86_64-cpython-311/layer2/Sculpt.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer2/ObjectSurface.cpp: In function ‘ObjectSurfaceDump(ObjectSurface*, char const*, int, int)’:
layer2/ObjectSurface.cpp:268:30: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 235 [-Wformat-truncation=]
  268 |         " ObjectSurfaceDump: %s written to %s\n", I->Name, fname ENDFB(I->G);
      |                              ^~
In file included from layer1/Ortho.h:32,
                 from layer1/Scene.h:23,
                 from layer2/ObjectSurface.cpp:35:
layer0/Feedback.h:274:15: note: ‘snprintf’ output 34 or more bytes (assuming 289) into a destination of size 255
  274 |     (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |               ^
layer2/ObjectSurface.cpp: In member function ‘ObjectSurface::update()’:
layer2/ObjectSurface.cpp:493:43: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 229 [-Wformat-truncation=]
  493 |               " ObjectSurface: updating \"%s\".\n", I->Name ENDFB(I->G);
      |                                           ^~
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 30 and 285 bytes into a destination of size 255
  274 |     (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |               ^
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer3/MoleculeExporter.cpp -o build/temp.linux-x86_64-cpython-311/layer3/MoleculeExporter.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/SculptCache.cpp -o build/temp.linux-x86_64-cpython-311/layer2/SculptCache.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/SideChainHelper.cpp -o build/temp.linux-x86_64-cpython-311/layer2/SideChainHelper.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In file included from layer1/PyMOLObject.h:26,
                 from layer2/ObjectMolecule.h:24,
                 from layer2/SideChainHelper.h:9,
                 from layer2/SideChainHelper.cpp:10:
In function ‘SettingUniqueGetTypedValuePtr(PyMOLGlobals*, int, int, int, bool*)’,
    inlined from ‘SettingUniqueGetIfDefined<bool>(PyMOLGlobals*, int, int, bool*)bool’ at layer1/Setting.h:447:39,
    inlined from ‘AtomSettingGetIfDefined<bool, AtomInfoType const>(PyMOLGlobals*, AtomInfoType const*, int, bool*)bool’ at layer2/AtomInfo.h:496:33,
    inlined from ‘AtomSettingGetWD<bool, AtomInfoType const>(PyMOLGlobals*, AtomInfoType const*, int, bool)bool’ at layer2/AtomInfo.h:506:36,
    inlined from ‘SideChainHelperMarkNonCartoonBonded(bool*, ObjectMolecule const*, CoordSet const*, bool, bool)’ at layer2/SideChainHelper.cpp:47:26:
layer1/Setting.h:436:11: warning: ‘out’ may be used uninitialized [-Wmaybe-uninitialized]
  436 |   int i = *out;
      |           ^~~~
In file included from layer2/ObjectMolecule.h:25:
layer2/AtomInfo.h: In function ‘SideChainHelperMarkNonCartoonBonded(bool*, ObjectMolecule const*, CoordSet const*, bool, bool)’:
layer2/AtomInfo.h:505:5: note: ‘out’ was declared here
  505 |   V out;
      |     ^~~
In function ‘SettingUniqueGetTypedValuePtr(PyMOLGlobals*, int, int, int, bool*)’,
    inlined from ‘SettingUniqueGetIfDefined<bool>(PyMOLGlobals*, int, int, bool*)bool’ at layer1/Setting.h:447:39,
    inlined from ‘AtomSettingGetIfDefined<bool, AtomInfoType const>(PyMOLGlobals*, AtomInfoType const*, int, bool*)bool’ at layer2/AtomInfo.h:496:33,
    inlined from ‘AtomSettingGetWD<bool, AtomInfoType const>(PyMOLGlobals*, AtomInfoType const*, int, bool)bool’ at layer2/AtomInfo.h:506:36,
    inlined from ‘SideChainHelperMarkNonCartoonBonded(bool*, ObjectMolecule const*, CoordSet const*, bool, bool)’ at layer2/SideChainHelper.cpp:49:26:
layer1/Setting.h:436:11: warning: ‘out’ may be used uninitialized [-Wmaybe-uninitialized]
  436 |   int i = *out;
      |           ^~~~
layer2/AtomInfo.h: In function ‘SideChainHelperMarkNonCartoonBonded(bool*, ObjectMolecule const*, CoordSet const*, bool, bool)’:
layer2/AtomInfo.h:505:5: note: ‘out’ was declared here
  505 |   V out;
      |     ^~~
In function ‘SettingUniqueGetTypedValuePtr(PyMOLGlobals*, int, int, int, bool*)’,
    inlined from ‘SettingUniqueGetIfDefined<bool>(PyMOLGlobals*, int, int, bool*)bool’ at layer1/Setting.h:447:39,
    inlined from ‘AtomSettingGetIfDefined<bool, AtomInfoType const>(PyMOLGlobals*, AtomInfoType const*, int, bool*)bool’ at layer2/AtomInfo.h:496:33,
    inlined from ‘AtomSettingGetWD<bool, AtomInfoType const>(PyMOLGlobals*, AtomInfoType const*, int, bool)bool’ at layer2/AtomInfo.h:506:36,
    inlined from ‘SideChainHelperMarkNonCartoonBonded(bool*, ObjectMolecule const*, CoordSet const*, bool, bool)’ at layer2/SideChainHelper.cpp:55:26:
layer1/Setting.h:436:11: warning: ‘out’ may be used uninitialized [-Wmaybe-uninitialized]
  436 |   int i = *out;
      |           ^~~~
layer2/AtomInfo.h: In function ‘SideChainHelperMarkNonCartoonBonded(bool*, ObjectMolecule const*, CoordSet const*, bool, bool)’:
layer2/AtomInfo.h:505:5: note: ‘out’ was declared here
  505 |   V out;
      |     ^~~
In function ‘SettingUniqueGetTypedValuePtr(PyMOLGlobals*, int, int, int, bool*)’,
    inlined from ‘SettingUniqueGetIfDefined<bool>(PyMOLGlobals*, int, int, bool*)bool’ at layer1/Setting.h:447:39,
    inlined from ‘AtomSettingGetIfDefined<bool, AtomInfoType const>(PyMOLGlobals*, AtomInfoType const*, int, bool*)bool’ at layer2/AtomInfo.h:496:33,
    inlined from ‘AtomSettingGetWD<bool, AtomInfoType const>(PyMOLGlobals*, AtomInfoType const*, int, bool)bool’ at layer2/AtomInfo.h:506:36,
    inlined from ‘SideChainHelperMarkNonCartoonBonded(bool*, ObjectMolecule const*, CoordSet const*, bool, bool)’ at layer2/SideChainHelper.cpp:57:26:
layer1/Setting.h:436:11: warning: ‘out’ may be used uninitialized [-Wmaybe-uninitialized]
  436 |   int i = *out;
      |           ^~~~
layer2/AtomInfo.h: In function ‘SideChainHelperMarkNonCartoonBonded(bool*, ObjectMolecule const*, CoordSet const*, bool, bool)’:
layer2/AtomInfo.h:505:5: note: ‘out’ was declared here
  505 |   V out;
      |     ^~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer2/VFont.cpp -o build/temp.linux-x86_64-cpython-311/layer2/VFont.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer3/AtomIterators.cpp -o build/temp.linux-x86_64-cpython-311/layer3/AtomIterators.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer3/AtomIterators.cpp: In member function ‘virtual bool SeleAtomIterator::next()’:
layer3/AtomIterators.cpp:61:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   61 |   while ((++a) < I->Table.size()) {
      |          ~~~~~~^~~~~~~~~~~~~~~~~
layer3/AtomIterators.cpp: In member function ‘virtual bool SeleCoordIterator::next()’:
layer3/AtomIterators.cpp:129:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  129 |   for (a++; a < I->Table.size(); a++) {
      |             ~~^~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer3/CifDataValueFormatter.cpp -o build/temp.linux-x86_64-cpython-311/layer3/CifDataValueFormatter.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer3/Editor.cpp -o build/temp.linux-x86_64-cpython-311/layer3/Editor.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer3/Editor.cpp: In function ‘pymol::Result<> EditorSelect(PyMOLGlobals*, const char*, const char*, const char*, const char*, int, int, int)’:
layer3/Editor.cpp:776:7: warning: variable ‘result’ set but not used [-Wunused-but-set-variable]
  776 |   int result = false;
      |       ^~~~~~
layer3/Editor.cpp: In function ‘EditorDefineExtraPks(PyMOLGlobals*)’:
layer3/Editor.cpp:335:29: warning: ‘%s’ directive writing up to 255 bytes into a region of size 249 [-Wformat-overflow=]
  335 |     sprintf(buffer, "(byres %s)", name);
      |                             ^~    ~~~~
layer3/Editor.cpp:335:12: note: ‘sprintf’ output between 9 and 264 bytes into a destination of size 256
  335 |     sprintf(buffer, "(byres %s)", name);
      |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Editor.cpp:337:31: warning: ‘%s’ directive writing up to 255 bytes into a region of size 247 [-Wformat-overflow=]
  337 |     sprintf(buffer, "(bychain %s)", name);
      |                               ^~    ~~~~
layer3/Editor.cpp:337:12: note: ‘sprintf’ output between 11 and 266 bytes into a destination of size 256
  337 |     sprintf(buffer, "(bychain %s)", name);
      |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Editor.cpp:339:32: warning: ‘%s’ directive writing up to 255 bytes into a region of size 246 [-Wformat-overflow=]
  339 |     sprintf(buffer, "(byobject %s)", name);
      |                                ^~    ~~~~
layer3/Editor.cpp:339:12: note: ‘sprintf’ output between 12 and 267 bytes into a destination of size 256
  339 |     sprintf(buffer, "(byobject %s)", name);
      |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Editor.cpp: In function ‘EditorPrepareDrag(PyMOLGlobals*, pymol::CObject*, int, int, int, int)’:
layer3/Editor.cpp:1933:29: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 236 [-Wformat-truncation=]
 1933 |         " Editor: grabbing (%s).", name ENDFB(G);
      |                             ^~     ~~~~
In file included from layer1/Ortho.h:32,
                 from layer1/ButMode.h:20,
                 from layer3/Editor.cpp:28:
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 22 and 277 bytes into a destination of size 255
  274 |     (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |               ^
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer3/Executive.cpp -o build/temp.linux-x86_64-cpython-311/layer3/Executive.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer3/MovieScene.cpp -o build/temp.linux-x86_64-cpython-311/layer3/MovieScene.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer3/Executive.cpp: In function ‘pymol::Result<> ExecutiveIsosurfaceEtc(PyMOLGlobals*, const char*, const char*, float, const char*, float, int, float, int, int, int, int)’:
layer3/Executive.cpp:986:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  986 |         if(map_state >= mapObj->State.size())
      |            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp: In function ‘pymol::Result<> ExecutiveIsomeshEtc(PyMOLGlobals*, const char*, const char*, float, const char*, float, int, float, int, int, int, float)’:
layer3/Executive.cpp:1132:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1132 |         if(map_state >= mapObj->State.size())
      |            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp: In function ‘pymol::Result<> ExecutiveVolume(PyMOLGlobals*, const char*, const char*, float, const char*, float, int, float, int, int)’:
layer3/Executive.cpp:1305:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1305 |         if(map_state >= mapObj->State.size())
      |            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/13/cassert:44,
                 from /usr/include/glm/detail/func_exponential.inl:8,
                 from /usr/include/glm/exponential.hpp:110,
                 from /usr/include/glm/detail/func_geometric.inl:1,
                 from /usr/include/glm/geometric.hpp:116,
                 from /usr/include/glm/detail/func_matrix.inl:1,
                 from /usr/include/glm/matrix.hpp:161,
                 from /usr/include/glm/detail/type_mat2x2.inl:1,
                 from /usr/include/glm/detail/type_mat2x2.hpp:176,
                 from /usr/include/glm/ext/matrix_double2x2.hpp:5,
                 from /usr/include/glm/mat2x2.hpp:5,
                 from /usr/include/glm/glm.hpp:119,
                 from layer3/Executive.cpp:114:
layer3/Executive.cpp: In function ‘pymol::Result<> ExecutiveSmooth(PyMOLGlobals*, const char*, int, int, int, int, int, int, float, bool)’:
layer3/Executive.cpp:6095:17: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare]
 6095 |   assert(n_atom == SelectorCountAtoms(G, sele, cStateAll));
      |          ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp:6155:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare]
 6155 |       for (int c = 0; c < n_atom; ++c) {
      |                       ~~^~~~~~~~
layer3/Executive.cpp: In function ‘pymol::Result<> ExecutiveMapSet(PyMOLGlobals*, const char*, int, const char*, int, int, int, int)’:
layer3/Executive.cpp:6325:34: warning: comparison of integer expressions of different signedness: ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
 6325 |             if(obj->State.size() > max_n_state)
      |                ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
layer3/Executive.cpp:6436:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 6436 |                     if(src_state < obj->State.size()) {
      |                        ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp: In function ‘float ExecutiveRMSPairs(PyMOLGlobals*, const std::vector<SelectorTmp>&, int, bool)’:
layer3/Executive.cpp:11035:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
11035 |   for(a = 0; a < pairs; a++) {
      |              ~~^~~~~~~
layer3/Executive.cpp:11040:10: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
11040 |     if(a < (pairs - 1))
      |        ~~^~~~~~~~~~~~~
layer3/Executive.cpp: In function ‘pymol::Result<> ExecutiveColor(PyMOLGlobals*, const char*, const char*, int, int)’:
layer3/Executive.cpp:12401:7: warning: variable ‘ok’ set but not used [-Wunused-but-set-variable]
12401 |   int ok = false;
      |       ^~
layer3/Executive.cpp: In function ‘void ExecutiveSymExp(PyMOLGlobals*, const char*, const char*, const char*, float, int, int)’:
layer3/Executive.cpp:14066:40: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
14066 |             for (unsigned idx = 0; idx < cs->NIndex; ++idx) {
      |                                    ~~~~^~~~~~~~~~~~
layer3/Executive.cpp:14093:40: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
14093 |             for (unsigned atm = 0; atm < new_obj->NAtom; ++atm) {
      |                                    ~~~~^~~~~~~~~~~~~~~~
In file included from layer3/Executive.cpp:51:
layer3/Executive.cpp: In lambda function:
layer0/ListMacros.h:100:9: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  100 |         else \
      |         ^~~~
layer0/ListMacros.h:141:4: note: in expansion of macro ‘ListDetach’
  141 |    ListDetach(List,copy,Link,ElemType); \
      |    ^~~~~~~~~~
layer3/Executive.cpp:14194:7: note: in expansion of macro ‘ListDelete’
14194 |       ListDelete(I->Spec, rec, next, SpecRec);        /* NOTE: order N in list length! TO FIX */
      |       ^~~~~~~~~~
layer0/ListMacros.h:102:11: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  102 |           (Elem)->Link = NULL; \
      |           ^
layer0/ListMacros.h:141:4: note: in expansion of macro ‘ListDetach’
  141 |    ListDetach(List,copy,Link,ElemType); \
      |    ^~~~~~~~~~
layer3/Executive.cpp:14194:7: note: in expansion of macro ‘ListDelete’
14194 |       ListDelete(I->Spec, rec, next, SpecRec);        /* NOTE: order N in list length! TO FIX */
      |       ^~~~~~~~~~
layer3/Executive.cpp: In lambda function:
layer0/ListMacros.h:100:9: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  100 |         else \
      |         ^~~~
layer0/ListMacros.h:141:4: note: in expansion of macro ‘ListDetach’
  141 |    ListDetach(List,copy,Link,ElemType); \
      |    ^~~~~~~~~~
layer3/Executive.cpp:14206:7: note: in expansion of macro ‘ListDelete’
14206 |       ListDelete(I->Spec, rec, next, SpecRec);        /* NOTE: order N in list length! TO FIX */
      |       ^~~~~~~~~~
layer0/ListMacros.h:102:11: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  102 |           (Elem)->Link = NULL; \
      |           ^
layer0/ListMacros.h:141:4: note: in expansion of macro ‘ListDetach’
  141 |    ListDetach(List,copy,Link,ElemType); \
      |    ^~~~~~~~~~
layer3/Executive.cpp:14206:7: note: in expansion of macro ‘ListDelete’
14206 |       ListDelete(I->Spec, rec, next, SpecRec);        /* NOTE: order N in list length! TO FIX */
      |       ^~~~~~~~~~
layer3/Executive.cpp: In member function ‘virtual int CExecutive::click(int, int, int, int)’:
layer3/Executive.cpp:14873:68: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
14873 |               if(((panel->is_group) && (((xx) - 1) / DIP2PIXEL(8)) > (panel->nest_level + 1)) ||
      |                                        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp:14874:69: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
14874 |                  ((!panel->is_group) && (((xx) - 1) / DIP2PIXEL(8)) > panel->nest_level)) {
      |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp: In member function ‘virtual int CExecutive::release(int, int, int, int)’:
layer3/Executive.cpp:15162:65: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
15162 |                (((panel->is_group) && ((xx - 1) / DIP2PIXEL(8)) > (panel->nest_level + 1)) ||
      |                                       ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp:15163:66: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
15163 |                 ((!panel->is_group) && ((xx - 1) / DIP2PIXEL(8)) > panel->nest_level))) {
      |                                        ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp: In member function ‘virtual int CExecutive::drag(int, int, int)’:
layer3/Executive.cpp:15304:70: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
15304 |                   if(((panel->is_group) && ((xx - 1) / DIP2PIXEL(8)) > (panel->nest_level + 1)) ||
      |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp:15305:71: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
15305 |                      ((!panel->is_group) && ((xx - 1) / DIP2PIXEL(8)) > panel->nest_level)) {
      |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp:15340:71: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
15340 |                   if(!((panel->is_group) && ((xx - 1) / DIP2PIXEL(8)) > (panel->nest_level + 1))) {
      |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer0/OOMac.h:22,
                 from layer3/Executive.cpp:37:
layer3/Executive.cpp: In function ‘void ExecutiveFree(PyMOLGlobals*)’:
layer0/MemoryDebug.h:86:32: warning: deleting object of polymorphic class type ‘CExecutive’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
   86 | #define DeleteP(ptr) {if(ptr) {delete ptr;ptr=NULL;}}
layer3/Executive.cpp:16294:3: note: in expansion of macro ‘DeleteP’
16294 |   DeleteP(G->Executive);
      |   ^~~~~~~
layer3/Executive.cpp: In function ‘pymol::Result<> ExecutiveSliceNew(PyMOLGlobals*, const char*, const char*, int, int)’:
layer3/Executive.cpp:16607:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
16607 |         if(map_state >= mapObj->State.size())
      |            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
In file included from layer3/Executive.h:38,
                 from layer3/Executive.cpp:38:
layer0/TrackerList.h: In instantiation of ‘pymol::TrackerAdapter<T>::TrackerAdapterIterator<IsConst>::TrackerAdapterIterator(CTracker*, int) [with bool IsConst = false; T = SpecRec]’:
layer0/TrackerList.h:99:29:   required from ‘pymol::TrackerAdapter<T>::iterator pymol::TrackerAdapter<T>::begin() [with T = SpecRec; iterator = pymol::TrackerAdapter<SpecRec>::TrackerAdapterIterator<false>]’
layer3/Executive.cpp:202:62:   required from here
layer0/TrackerList.h:80:15: warning: ‘pymol::TrackerAdapter<SpecRec>::TrackerAdapterIterator<false>::m_tracker’ will be initialized after [-Wreorder]
   80 |     CTracker* m_tracker;
      |               ^~~~~~~~~
layer0/TrackerList.h:79:9: warning:   ‘int pymol::TrackerAdapter<SpecRec>::TrackerAdapterIterator<false>::m_iter_id’ [-Wreorder]
   79 |     int m_iter_id = -1;
      |         ^~~~~~~~~
layer0/TrackerList.h:35:14: warning:   when initialized here [-Wreorder]
   35 |     explicit TrackerAdapterIterator(CTracker* tracker, int list_id)
      |              ^~~~~~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer3/PlugIOManager.cpp -o build/temp.linux-x86_64-cpython-311/layer3/PlugIOManager.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer3/Executive.cpp: In function ‘ExecutiveRemoveAtoms(PyMOLGlobals*, char const*, int)’:
layer3/Executive.cpp:9007:58: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size between 207 and 217 [-Wformat-truncation=]
 9007 |                 " Remove: eliminated %d atoms in model \"%s\".\n",
      |                                                          ^~
In file included from layer1/Ortho.h:32,
                 from layer3/ExecutiveDef.h:3,
                 from layer3/Executive.h:29:
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 42 and 307 bytes into a destination of size 255
  274 |     (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |               ^
layer3/Executive.cpp: In function ‘ExecutiveSetBondSettingFromString(PyMOLGlobals*, int, char const*, char const*, char const*, int, int, int)’:
layer3/Executive.cpp:11424:28: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
11424 |                 " Setting: %s set for %d bonds in object \"%s\".\n",
      |                            ^~
11425 |                 name, nSet, obj->Name ENDF(G);
      |                 ~~~~        
layer3/Executive.cpp:11424:17: note: using the range [-2147483648, 2147483647] for directive argument
11424 |                 " Setting: %s set for %d bonds in object \"%s\".\n",
      |                 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer0/Feedback.h:282:53: note: ‘snprintf’ output between 42 and 561 bytes into a destination of size 255
  282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |                                                     ^
layer3/Executive.cpp: In function ‘ExecutiveGetBondSetting(PyMOLGlobals*, int, char*, char const*, int, int, int)’:
layer3/Executive.cpp:11505:26: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
11505 |               " Getting: %s for %d bonds in object \"%s\".\n",
      |                          ^~
11506 |               name, nSet, obj->Name ENDF(G);
      |               ~~~~        
layer3/Executive.cpp:11505:15: note: using the range [-2147483648, 2147483647] for directive argument
11505 |               " Getting: %s for %d bonds in object \"%s\".\n",
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer0/Feedback.h:282:53: note: ‘snprintf’ output between 38 and 557 bytes into a destination of size 255
  282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |                                                     ^
layer3/Executive.cpp: In function ‘ExecutiveSetBondSetting(PyMOLGlobals*, int, _object*, char const*, char const*, int, int, int)’:
layer3/Executive.cpp:11605:62: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 217 [-Wformat-truncation=]
11605 |                   " Setting: %s set for %d bonds in object \"%s\".\n",
      |                                                              ^~
layer0/Feedback.h:282:53: note: ‘snprintf’ output 42 or more bytes (assuming 297) into a destination of size 255
  282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |                                                     ^
layer3/Executive.cpp: In function ‘ExecutiveUnsetBondSetting(PyMOLGlobals*, int, char const*, char const*, int, int, int)’:
layer3/Executive.cpp:11684:26: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
11684 |               " Setting: %s unset for %d bonds in object \"%s\".\n",
      |                          ^~
11685 |               name, nSet, rec->obj->Name ENDF(G);
      |               ~~~~        
layer3/Executive.cpp:11684:15: note: using the range [-2147483648, 2147483647] for directive argument
11684 |               " Setting: %s unset for %d bonds in object \"%s\".\n",
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer0/Feedback.h:282:53: note: ‘snprintf’ output between 44 and 563 bytes into a destination of size 255
  282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |                                                     ^
layer3/Executive.cpp: In function ‘ExecutiveSetObjSettingFromString(PyMOLGlobals*, int, char const*, pymol::CObject*, int, int, int)’:
layer3/Executive.cpp:12226:30: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
12226 |                   " Setting: %s set to %s in object \"%s\", state %d.\n",
      |                              ^~
12227 |                   name, value2, obj->Name, state + 1 ENDF(G);
      |                   ~~~~        
layer3/Executive.cpp:12226:19: note: directive argument in the range [1, 2147483647]
12226 |                   " Setting: %s set to %s in object \"%s\", state %d.\n",
      |                   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer0/Feedback.h:282:53: note: ‘snprintf’ output between 43 and 1584 bytes into a destination of size 255
  282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |                                                     ^
layer3/Executive.cpp:12218:30: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
12218 |                   " Setting: %s set to %s in object \"%s\".\n",
      |                              ^~
12219 |                   name, value2, obj->Name ENDF(G);
      |                   ~~~~        
layer0/Feedback.h:282:53: note: ‘snprintf’ output between 34 and 1566 bytes into a destination of size 255
  282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |                                                     ^
layer3/Executive.cpp:12197:29: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
12197 |           PRINTF " Setting: %s set to %s.\n", name, value2 ENDF(G);
      |                             ^~                ~~~~
layer0/Feedback.h:282:53: note: ‘snprintf’ output between 21 and 1298 bytes into a destination of size 255
  282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |                                                     ^
layer3/Executive.cpp: In function ‘ExecutiveSetSettingFromString(PyMOLGlobals*, int, char const*, char const*, int, int, int)’:
layer3/Executive.cpp:12129:36: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
12129 |                         " Setting: %s set for %d atoms in object \"%s\".\n",
      |                                    ^~
12130 |                         name, op.i4, rec->obj->Name ENDF(G);
      |                         ~~~~        
layer0/Feedback.h:282:53: note: ‘snprintf’ output between 42 and 561 bytes into a destination of size 255
  282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |                                                     ^
layer3/Executive.cpp:12097:32: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
12097 |                     " Setting: %s set to %s in %d objects, state %d.\n",
      |                                ^~
12098 |                     name, value2, nObj, state + 1 ENDF(G);
      |                     ~~~~        
layer3/Executive.cpp:12097:21: note: using the range [-2147483648, 2147483647] for directive argument
12097 |                     " Setting: %s set to %s in %d objects, state %d.\n",
      |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp:12097:21: note: directive argument in the range [1, 2147483647]
layer0/Feedback.h:282:53: note: ‘snprintf’ output between 43 and 1339 bytes into a destination of size 255
  282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |                                                     ^
layer3/Executive.cpp:12094:32: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
12094 |                     " Setting: %s set to %s in %d objects.\n", name, value2, nObj ENDF(G);
      |                                ^~                              ~~~~
layer3/Executive.cpp:12094:21: note: using the range [-2147483648, 2147483647] for directive argument
12094 |                     " Setting: %s set to %s in %d objects.\n", name, value2, nObj ENDF(G);
      |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer0/Feedback.h:282:53: note: ‘snprintf’ output between 34 and 1321 bytes into a destination of size 255
  282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |                                                     ^
layer3/Executive.cpp:12161:36: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
12161 |                         " Setting: %s set to %s in object \"%s\", state %d.\n",
      |                                    ^~
12162 |                         name, value2, rec->obj->Name, state + 1 ENDF(G);
      |                         ~~~~        
layer3/Executive.cpp:12161:25: note: directive argument in the range [1, 2147483647]
12161 |                         " Setting: %s set to %s in object \"%s\", state %d.\n",
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer0/Feedback.h:282:53: note: ‘snprintf’ output between 43 and 1584 bytes into a destination of size 255
  282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |                                                     ^
layer3/Executive.cpp:12153:36: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
12153 |                         " Setting: %s set to %s in object \"%s\".\n",
      |                                    ^~
12154 |                         name, value2, rec->obj->Name ENDF(G);
      |                         ~~~~        
layer0/Feedback.h:282:53: note: ‘snprintf’ output between 34 and 1566 bytes into a destination of size 255
  282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |                                                     ^
layer3/Executive.cpp:12057:29: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
12057 |           PRINTF " Setting: %s set to %s.\n", name, value2 ENDF(G);
      |                             ^~                ~~~~
layer0/Feedback.h:282:53: note: ‘snprintf’ output between 21 and 1298 bytes into a destination of size 255
  282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |                                                     ^
layer3/PlugIOManager.cpp: In function ‘ObjectMap* PlugIOManagerLoadVol(PyMOLGlobals*, ObjectMap*, const char*, int, int, const char*)’:
layer3/PlugIOManager.cpp:416:34: warning: comparison of integer expressions of different signedness: ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  416 |             if(obj->State.size() <= state) {
      |                ~~~~~~~~~~~~~~~~~~^~~~~~~~
In file included from /usr/include/c++/13/cassert:44,
                 from layer0/Field.h:24,
                 from layer0/Isosurf.h:24,
                 from layer2/ObjectMap.h:25,
                 from layer3/PlugIOManager.h:23,
                 from layer3/PlugIOManager.cpp:24:
layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = float; SizeTs = {int, int, int}]’:
layer0/Field.h:114:19:   required from ‘T& CField::get(SizeTs ...) [with T = float; SizeTs = {int, int, int}]’
layer3/PlugIOManager.cpp:541:21:   required from here
layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare]
  100 |     assert(sizeof...(pos) <= n_dim());
      |            ~~~~~~~~~~~~~~~^~~~~~~~~~
layer3/PlugIOManager.cpp: In function ‘PlugIOManagerLoad’:
layer3/PlugIOManager.cpp:946:65: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 200 [-Wformat-truncation=]
  946 |         " PlugIOManagerLoad: can't load trajectory into object '%s'\n", obj->Name ENDFB(G);
      |                                                                 ^~
In file included from /usr/include/stdio.h:906,
                 from /usr/include/python3.11/Python.h:24,
                 from layer0/os_python.h:34,
                 from layer3/PlugIOManager.cpp:20:
In function ‘snprintf’,
    inlined from ‘PlugIOManagerLoad’ at layer3/PlugIOManager.cpp:945:7:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 58 and 313 bytes into a destination of size 255
   54 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   55 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   56 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
layer3/Executive.cpp: In function ‘ExecutiveSetSymmetry(PyMOLGlobals*, pymol::zstring_view, int, CSymmetry const&, bool)’:
layer3/Executive.cpp:5951:43: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 202 [-Wformat-truncation=]
 5951 |       " %s-Details: Updated symmetry for '%s'\n", __func__, obj->Name ENDFB(G);
      |                                           ^~
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 56 and 311 bytes into a destination of size 255
  274 |     (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |               ^
layer3/Executive.cpp:5942:46: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 199 [-Wformat-truncation=]
 5942 |       " %s-Warning: Cannot set symmetry for '%s' (type %s)\n", __func__,
      |                                              ^~
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 84 and 339 bytes into a destination of size 255
  274 |     (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |               ^
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer3/RingFinder.cpp -o build/temp.linux-x86_64-cpython-311/layer3/RingFinder.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer3/Executive.cpp: In function ‘ExecutiveSpectrum(PyMOLGlobals*, pymol::zstring_view, pymol::zstring_view, float, float, int, int, pymol::zstring_view, int, int, int)’:
layer3/Executive.cpp:4764:24: warning: ‘strncpy’ specified bound 8 equals destination size [-Wstringop-truncation]
 4764 |                 strncpy(value_s, raw_ptr, sizeof(value_e));
      |                 ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/RingFinder.cpp: In member function ‘void AbstractRingFinder::recursion(int, int)’:
layer3/RingFinder.cpp:23:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   23 |     } else if (depth < m_indices.size() - 1) {
      |                ~~~~~~^~~~~~~~~~~~~~~~~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer3/Seeker.cpp -o build/temp.linux-x86_64-cpython-311/layer3/Seeker.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer3/Executive.cpp: In function ‘ExecutiveBond(PyMOLGlobals*, char const*, char const*, int, int, int, pymol::zstring_view)’:
layer3/Executive.cpp:9358:53: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size between 214 and 224 [-Wformat-truncation=]
 9358 |                   " Bond: %d bonds added to model \"%s\".\n", cnt, rec->obj->Name
      |                                                     ^~
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 35 and 300 bytes into a destination of size 255
  274 |     (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |               ^
layer3/Executive.cpp:9371:67: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size between 200 and 210 [-Wformat-truncation=]
 9371 |                   " Valence: %d bond valences adjusted in model \"%s\".\n", cnt,
      |                                                                   ^~
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 49 and 314 bytes into a destination of size 255
  274 |     (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |               ^
layer3/Executive.cpp:9383:59: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size between 208 and 218 [-Wformat-truncation=]
 9383 |                   " Unbond: %d bonds removed from model \"%s\".\n",
      |                                                           ^~
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 41 and 306 bytes into a destination of size 255
  274 |     (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |               ^
layer3/Seeker.cpp: In function ‘void SeekerRefresh(PyMOLGlobals*, std::vector<CSeqRow>&)’:
layer3/Seeker.cpp:485:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
  485 |   for(int b = 0; b < nRow; b++) {
      |                  ~~^~~~~~
layer3/Seeker.cpp: In function ‘void SeekerUpdate(PyMOLGlobals*)’:
layer3/Seeker.cpp:1150:23: warning: comparison of integer expressions of different signedness: ‘ov_size’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
 1150 |           if(row->len < min_pad) {
      |              ~~~~~~~~~^~~~~~~~~
layer3/Seeker.cpp:1186:23: warning: comparison of integer expressions of different signedness: ‘ov_size’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
 1186 |           if(row->len < min_pad) {
      |              ~~~~~~~~~^~~~~~~~~
layer3/Seeker.cpp: In lambda function:
layer3/Seeker.cpp:1248:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
 1248 |             for(int i = 0; i < str_size; i++){
      |                            ~~^~~~~~~~~~
layer3/Seeker.cpp: In function ‘void SeekerUpdate(PyMOLGlobals*)’:
layer3/Seeker.cpp:1930:27: warning: comparison of integer expressions of different signedness: ‘ov_size’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
 1930 |           if(row->ext_len < stop)
      |              ~~~~~~~~~~~~~^~~~~~
In file included from layer0/vla.h:7,
                 from layer1/Symmetry.h:26,
                 from layer1/PyMOLObject.h:27,
                 from layer1/Seq.h:21,
                 from layer3/Seeker.cpp:26:
layer3/Seeker.cpp: In function ‘void SeekerFree(PyMOLGlobals*)’:
layer0/MemoryDebug.h:86:32: warning: deleting object of polymorphic class type ‘CSeeker’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
   86 | #define DeleteP(ptr) {if(ptr) {delete ptr;ptr=NULL;}}
layer3/Seeker.cpp:1964:3: note: in expansion of macro ‘DeleteP’
 1964 |   DeleteP(G->Seeker);
      |   ^~~~~~~
layer3/Executive.cpp: In function ‘ExecutiveSetSetting(PyMOLGlobals*, int, _object*, pymol::zstring_view, int, int, int)’:
layer3/Executive.cpp:11877:70: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 217 [-Wformat-truncation=]
11877 |                           " Setting: %s set for %d atoms in object \"%s\".\n",
      |                                                                      ^~
layer0/Feedback.h:282:53: note: ‘snprintf’ output 42 or more bytes (assuming 297) into a destination of size 255
  282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |                                                     ^
layer3/Executive.cpp:11788:42: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 237 [-Wformat-truncation=]
11788 |                     " Setting: %s set to %s in %d objects, state %d.\n",
      |                                          ^~
11789 |                     name, value, nObj, state + 1 ENDF(G);
      |                           ~~~~~           
layer3/Executive.cpp:11788:21: note: using the range [-2147483648, 2147483647] for directive argument
11788 |                     " Setting: %s set to %s in %d objects, state %d.\n",
      |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp:11788:21: note: directive argument in the range [1, 2147483647]
layer0/Feedback.h:282:53: note: ‘snprintf’ output 43 or more bytes (assuming 1075) into a destination of size 255
  282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |                                                     ^
layer3/Executive.cpp:11785:42: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 237 [-Wformat-truncation=]
11785 |                     " Setting: %s set to %s in %d objects.\n", name, value, nObj ENDF(G);
      |                                          ^~                          ~~~~~
layer3/Executive.cpp:11785:21: note: using the range [-2147483648, 2147483647] for directive argument
11785 |                     " Setting: %s set to %s in %d objects.\n", name, value, nObj ENDF(G);
      |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer0/Feedback.h:282:53: note: ‘snprintf’ output 34 or more bytes (assuming 1057) into a destination of size 255
  282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |                                                     ^
layer3/Executive.cpp:11909:46: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 237 [-Wformat-truncation=]
11909 |                         " Setting: %s set to %s in object \"%s\", state %d.\n",
      |                                              ^~
11910 |                         name, value, rec->obj->Name, state + 1 ENDF(G);
      |                               ~~~~~           
layer3/Executive.cpp:11909:25: note: directive argument in the range [1, 2147483647]
11909 |                         " Setting: %s set to %s in object \"%s\", state %d.\n",
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer0/Feedback.h:282:53: note: ‘snprintf’ output 43 or more bytes (assuming 1330) into a destination of size 255
  282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |                                                     ^
layer3/Executive.cpp:11902:46: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 237 [-Wformat-truncation=]
11902 |                         " Setting: %s set to %s in object \"%s\".\n",
      |                                              ^~
11903 |                         name, value, rec->obj->Name ENDF(G);
      |                               ~~~~~           
layer0/Feedback.h:282:53: note: ‘snprintf’ output 34 or more bytes (assuming 1312) into a destination of size 255
  282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |                                                     ^
layer3/Executive.cpp:11744:39: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 237 [-Wformat-truncation=]
11744 |           PRINTF " Setting: %s set to %s.\n", name, value ENDF(G);
      |                                       ^~            ~~~~~
layer0/Feedback.h:282:53: note: ‘snprintf’ output 21 or more bytes (assuming 1044) into a destination of size 255
  282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |                                                     ^
layer3/Executive.cpp: In function ‘ExecutiveUnsetSetting(PyMOLGlobals*, int, pymol::zstring_view, int, int, int)’:
layer3/Executive.cpp:12338:68: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 215 [-Wformat-truncation=]
12338 |                       " Setting: %s unset for %d atoms in object \"%s\".\n",
      |                                                                    ^~
layer0/Feedback.h:282:53: note: ‘snprintf’ output 44 or more bytes (assuming 299) into a destination of size 255
  282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |                                                     ^
layer3/Executive.cpp:12360:57: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 227 [-Wformat-truncation=]
12360 |                         " Setting: %s unset in object \"%s\", state %d.\n",
      |                                                         ^~
layer3/Executive.cpp:12360:25: note: directive argument in the range [1, 2147483647]
12360 |                         " Setting: %s unset in object \"%s\", state %d.\n",
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer0/Feedback.h:282:53: note: ‘snprintf’ output 41 or more bytes (assuming 305) into a destination of size 255
  282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |                                                     ^
layer3/Executive.cpp:12354:57: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 227 [-Wformat-truncation=]
12354 |                         " Setting: %s unset in object \"%s\".\n",
      |                                                         ^~
layer0/Feedback.h:282:53: note: ‘snprintf’ output 32 or more bytes (assuming 287) into a destination of size 255
  282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |                                                     ^
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer3/Selector.cpp -o build/temp.linux-x86_64-cpython-311/layer3/Selector.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer3/Executive.cpp: In function ‘ExecutiveManageObject(PyMOLGlobals*, pymol::CObject*, int, int)’:
layer3/Executive.cpp:14447:37: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 229 [-Wformat-truncation=]
14447 |         " Executive-Warning: name \"%s\" collides with a selection language keyword.\n",
      |                                     ^~
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 73 and 328 bytes into a destination of size 255
  274 |     (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |               ^
layer3/Executive.cpp:14442:36: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 230 [-Wformat-truncation=]
14442 |         " Executive: object name \"%s\" is illegal -- renamed to 'all_'.\n", obj->Name
      |                                    ^~
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 61 and 316 bytes into a destination of size 255
  274 |     (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |               ^
layer3/Executive.cpp:14473:11: warning: ‘strcpy’ offset 0 is out of the bounds [0, 0] [-Warray-bounds=]
14473 |     strcpy(rec->name, obj->Name);
      |     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp: In function ‘ExecutiveCopy(PyMOLGlobals*, char const*, char const*, int)’:
layer3/Executive.cpp:9665:25: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 236 [-Wformat-truncation=]
 9665 |     " Executive: object %s created.\n", oDst->Name ENDFB(G);
      |                         ^~
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 30 and 285 bytes into a destination of size 255
  274 |     (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |               ^
layer3/Executive.cpp: In member function ‘CExecutive::drag(int, int, int)’:
layer3/Executive.cpp:15471:55: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 1013 [-Wformat-overflow=]
15471 |                   sprintf(I->ReorderLog, "cmd.order(\"%s\",location=\"%s\")\n",
      |                                                       ^~
15472 |                           order_input, (location == -2) ? "upper" : "current");
      |                           ~~~~~~~~~~~                  
layer3/Executive.cpp:15471:26: note: ‘sprintf’ output between 32 and 1057 bytes into a destination of size 1024
15471 |                   sprintf(I->ReorderLog, "cmd.order(\"%s\",location=\"%s\")\n",
      |                   ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
15472 |                           order_input, (location == -2) ? "upper" : "current");
      |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In member function ‘virtual bool SelectorAtomIterator::next()’:
layer3/Selector.cpp:185:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  185 |   if ((++a) >= selector->Table.size())
      |       ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘bool SelectorIsSelectionDiscrete(PyMOLGlobals*, SelectorID_t, bool)’:
layer3/Selector.cpp:1028:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1028 |   for(int a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                             ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘int SelectorClassifyAtoms(PyMOLGlobals*, int, int, ObjectMolecule*)’:
layer3/Selector.cpp:1082:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1082 |   while(a < I->Table.size()) {
      |         ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:1106:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1106 |       while(a1 < I->Table.size()) {
      |             ~~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘const char* SelectorGetNameFromIndex(PyMOLGlobals*, SelectorID_t)’:
layer3/Selector.cpp:1519:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<SelectionInfoRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1519 |   for(int a = 1; a < I->Info.size(); a++) {
      |                  ~~^~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘int SelectorAssignSS(PyMOLGlobals*, int, int, int, int, ObjectMolecule*, int)’:
layer3/Selector.cpp:1653:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1653 |       for(a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                             ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:1680:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1680 |             while(a1 < I->Table.size()) {
      |                   ~~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:1874:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1874 |         for(a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                               ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘PyObject* SelectorColorectionGet(PyMOLGlobals*, const char*)’:
layer3/Selector.cpp:2687:18: warning: comparison of integer expressions of different signedness: ‘ov_size’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
 2687 |     for(b = 0; b < n_used; b++) {
      |                ~~^~~~~~~~
layer3/Selector.cpp:2703:16: warning: comparison of integer expressions of different signedness: ‘ov_size’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
 2703 |   for(a = 0; a < n_used; a++) {
      |              ~~^~~~~~~~
layer3/Selector.cpp:2715:18: warning: comparison of integer expressions of different signedness: ‘ov_size’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
 2715 |     for(b = 0; b < n_used; b++) {
      |                ~~^~~~~~~~
layer3/Selector.cpp: In function ‘int SelectorColorectionApply(PyMOLGlobals*, PyObject*, const char*)’:
layer3/Selector.cpp:2763:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘ov_size’ {aka ‘long unsigned int’} [-Wsign-compare]
 2763 |     for(b = 0; b < n_used; b++) {       /* update selection indices */
      |                ~~^~~~~~~~
layer3/Selector.cpp:2768:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 2768 |     for(a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                           ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:2772:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘ov_size’ {aka ‘long unsigned int’} [-Wsign-compare]
 2772 |       for(b = 0; b < n_used; b++) {
      |                  ~~^~~~~~~~
layer3/Selector.cpp: In function ‘PyObject* SelectorSecretsAsPyList(PyMOLGlobals*)’:
layer3/Selector.cpp:2873:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<SelectionInfoRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 2873 |   for(int a = 0; a < I->Info.size(); a++) {
      |                  ~~^~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘PyObject* SelectorAsPyList(PyMOLGlobals*, SelectorID_t)’:
layer3/Selector.cpp:2952:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 2952 |   for(a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                         ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘int SelectorCountStates(PyMOLGlobals*, int)’:
layer3/Selector.cpp:3446:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 3446 |   for(a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                         ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘int SelectorCheckIntersection(PyMOLGlobals*, int, int)’:
layer3/Selector.cpp:3470:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 3470 |   for(int a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                             ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘int SelectorCountAtoms(PyMOLGlobals*, int, int)’:
layer3/Selector.cpp:3488:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 3488 |   for(int a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                             ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘void SelectorSetDeleteFlagOnSelectionInObject(PyMOLGlobals*, int, ObjectMolecule*, signed char)’:
layer3/Selector.cpp:3503:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 3503 |   for(int a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                             ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘int* SelectorGetIndexVLAImpl(PyMOLGlobals*, CSelector*, SelectorID_t)’:
layer3/Selector.cpp:3589:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 3589 |   for(a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                         ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘void SelectorLogSele(PyMOLGlobals*, const char*)’:
layer3/Selector.cpp:3648:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 3648 |       for(a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                             ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘ObjectMolecule* SelectorGetSingleObjectMolecule(PyMOLGlobals*, SelectorID_t)’:
layer3/Selector.cpp:3813:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 3813 |   for (a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                          ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘ObjectMolecule* SelectorGetFirstObjectMolecule(PyMOLGlobals*, SelectorID_t)’:
layer3/Selector.cpp:3843:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 3843 |   for (a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                          ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘ObjectMolecule** SelectorGetObjectMoleculeVLA(PyMOLGlobals*, SelectorID_t)’:
layer3/Selector.cpp:3867:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 3867 |   for(a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                         ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘int SelectorSubdivide(PyMOLGlobals*, const char*, SelectorID_t, SelectorID_t, SelectorID_t, SelectorID_t, const char*, const char*, int*)’:
layer3/Selector.cpp:4266:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 4266 |       for(a = 0; a < I->Table.size(); a++)
      |                  ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘int SelectorGetSeleNCSet(PyMOLGlobals*, SelectorID_t)’:
layer3/Selector.cpp:4570:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 4570 |     for(a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                           ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘int SelectorGetArrayNCSet(PyMOLGlobals*, const sele_array_t&, int)’:
layer3/Selector.cpp:4600:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 4600 |   for(a = start; a < I->Table.size(); a++) {
      |                  ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘int SelectorMapMaskVDW(PyMOLGlobals*, int, ObjectMapState*, float, int)’:
layer3/Selector.cpp:4761:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 4761 |   for(a = 0; a < I->Table.size(); a++) {
      |              ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘int SelectorMapGaussian(PyMOLGlobals*, int, ObjectMapState*, float, int, int, int, int, float)’:
layer3/Selector.cpp:5121:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 5121 |   for(a = 0; a < I->Table.size(); a++) {
      |              ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:5165:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 5165 |   for(a = 0; a < I->Table.size(); a++) {
      |              ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘int SelectorMapCoulomb(PyMOLGlobals*, int, ObjectMapState*, float, int, int, int, float)’:
layer3/Selector.cpp:5373:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 5373 |   for(a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                         ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘int SelectorCreateObjectMolecule(PyMOLGlobals*, SelectorID_t, const char*, int, int, int, int, int, int, int)’:
layer3/Selector.cpp:6062:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 6062 |   if(ob)
      |   ^~
layer3/Selector.cpp:6066:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 6066 |     SelectorUpdateTable(G, source, -1);
      |     ^~~~~~~~~~~~~~~~~~~
layer3/Selector.cpp:6077:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 6077 |       for(a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                             ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In lambda function:
layer3/Selector.cpp:6103:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 6103 |   for(a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                         ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:6133:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMolecule*>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 6133 |   for(a = cNDummyModels; a < I->Obj.size(); a++) {  /* find bonds wholly contained in the selection */
      |                          ~~^~~~~~~~~~~~~~~
layer3/Selector.cpp:6159:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 6159 |     for(a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                           ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:6200:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 6200 |     for(a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                           ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:6224:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 6224 |       for(a = cNDummyAtoms; a < I->Table.size(); a++)  /* any selected atoms in this state? */
      |                             ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘int SelectorEmbedSelection(PyMOLGlobals*, const int*, pymol::zstring_view, ObjectMolecule*, int, int)’:
layer3/Selector.cpp:6660:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 6660 |   for(a = start; a < I->Table.size(); a++) {
      |                  ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘sele_array_t SelectorSelectFromTagDict(PyMOLGlobals*, const std::unordered_map<int, int>&)’:
layer3/Selector.cpp:6755:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 6755 |       for(int a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                                 ~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/13/cassert:44,
                 from layer0/Field.h:24,
                 from layer0/Isosurf.h:24,
                 from layer2/ObjectMap.h:25,
                 from layer3/Selector.h:27,
                 from layer3/Selector.cpp:39:
layer3/Selector.cpp: In function ‘void SelectorUpdateTableSingleObject(PyMOLGlobals*, ObjectMolecule*, int, bool)’:
layer3/Selector.cpp:6997:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 6997 |   assert(c == I->Table.size());
      |          ~~^~~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘sele_array_t SelectorGetSeleArrayForAtomIndices(CSelector*, ObjectMolecule*, const int*, int, bool)’:
layer3/Selector.cpp:7010:26: warning: comparison of integer expressions of different signedness: ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
 7010 |   assert(I->Table.size() == cNDummyAtoms + obj->NAtom);
      |          ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘int SelectorModulate1(PyMOLGlobals*, EvalElem*, int)’:
layer3/Selector.cpp:7293:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 7293 |           for (a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                                  ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7316:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 7316 |                   for(a = 0; ok && a < I->Table.size(); a++) {
      |                                    ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7379:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 7379 |       for(a = 0; a < I->Table.size(); a++) {
      |                  ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7393:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 7393 |           for(a = 0; a < I->Table.size(); a++) {
      |                      ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7416:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 7416 |                   for(a = 0; ok && a < I->Table.size(); a++) {
      |                                    ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7457:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 7457 |     for(a = cNDummyAtoms; a < I->Table.size(); a++)
      |                           ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘int SelectorSelect0(PyMOLGlobals*, EvalElem*)’:
layer3/Selector.cpp:7490:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 7490 |       for(a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                             ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7501:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 7501 |       for(a = cNDummyAtoms; a < I->Table.size(); a++)
      |                             ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7506:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 7506 |       for(a = cNDummyAtoms; a < I->Table.size(); a++)
      |                             ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7513:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 7513 |     for(a = cNDummyAtoms; a < I->Table.size(); a++)
      |                           ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7517:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 7517 |     for(a = cNDummyAtoms; a < I->Table.size(); a++)
      |                           ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7521:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 7521 |     for(a = cNDummyAtoms; a < I->Table.size(); a++)
      |                           ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7525:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 7525 |     for(a = cNDummyAtoms; a < I->Table.size(); a++)
      |                           ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7529:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 7529 |     for(a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                           ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7538:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 7538 |       for(a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                             ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7555:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 7555 |     for(a = cNDummyAtoms; a < I->Table.size(); a++)
      |                           ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7560:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 7560 |     for(a = cNDummyAtoms; a < I->Table.size(); a++)
      |                           ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7565:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 7565 |     for(a = cNDummyAtoms; a < I->Table.size(); a++)
      |                           ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7570:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 7570 |     for(a = cNDummyAtoms; a < I->Table.size(); a++)
      |                           ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7575:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 7575 |     for(a = cNDummyAtoms; a < I->Table.size(); a++)
      |                           ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7580:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 7580 |     for(a = cNDummyAtoms; a < I->Table.size(); a++)
      |                           ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7585:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 7585 |     for(a = cNDummyAtoms; a < I->Table.size(); a++)
      |                           ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7589:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 7589 |     for(a = cNDummyAtoms; a < I->Table.size(); a++)
      |                           ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7593:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 7593 |     for(a = cNDummyAtoms; a < I->Table.size(); a++)
      |                           ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7598:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 7598 |     for(a = cNDummyAtoms; a < I->Table.size(); a++)
      |                           ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7603:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 7603 |     for(a = cNDummyAtoms; a < I->Table.size(); a++)
      |                           ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7610:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 7610 |     for(a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                           ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7626:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 7626 |     for(a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                           ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7632:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 7632 |     for(a = 0; a < I->Table.size(); a++) {
      |                ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7641:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 7641 |     for(a = 0; a < I->Table.size(); a++) {
      |                ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7653:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 7653 |       for(a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                             ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7673:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 7673 |     for(a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                           ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘pymol::Result<> SelectorSelect1(PyMOLGlobals*, EvalElem*, int)’:
layer3/Selector.cpp:8378:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMolecule*>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 8378 |           for(a = cNDummyModels; a < I->Obj.size(); a++)
      |                                  ~~^~~~~~~~~~~~~~~
layer3/Selector.cpp:8388:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMolecule*>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 8388 |             else if(model > I->Obj.size())
      |                     ~~~~~~^~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘int SelectorSelect2(PyMOLGlobals*, EvalElem*, int)’:
layer3/Selector.cpp:8470:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 8470 |       for(a = cNDummyAtoms; a < I->Table.size(); a++)
      |                             ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:8474:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 8474 |         for(a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                               ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:8522:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 8522 |             for(a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                                   ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:8533:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 8533 |             for(a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                                   ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:8544:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 8544 |             for(a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                                   ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:8555:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 8555 |             for(a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                                   ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:8570:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 8570 |             for(a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                                   ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:8581:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 8581 |             for(a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                                   ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:8592:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 8592 |             for(a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                                   ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:8603:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 8603 |             for(a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                                   ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:8618:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 8618 |             for(a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                                   ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:8629:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 8629 |             for(a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                                   ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:8640:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 8640 |             for(a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                                   ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:8651:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 8651 |             for(a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                                   ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘int SelectorLogic1(PyMOLGlobals*, EvalElem*, int)’:
layer3/Selector.cpp:9128:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 9128 |           for(a = 0; a < I->Table.size(); a++) {
      |                      ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:9157:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 9157 |                   for(a = 0; a < I->Table.size(); a++) {
      |                              ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘int SelectorOperator22(PyMOLGlobals*, EvalElem*, int)’:
layer3/Selector.cpp:9416:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare]
 9416 |           for(a = 0; a < table_size; a++) {
      |                      ~~^~~~~~~~~~~~
layer3/Selector.cpp:9438:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 9438 |                   for(a = 0; a < I->Table.size(); a++) {
      |                              ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:9468:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 9468 |         for(a = 0; a < I->Table.size(); a++) {
      |                    ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:9473:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 9473 |       for(a = cNDummyAtoms; a < I->Table.size(); a++)
      |                             ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘pymol::Result<std::unique_ptr<int [], std::default_delete<int []> > > SelectorEvaluate(PyMOLGlobals*, std::vector<std::__cxx11::basic_string<char> >&, int, int)’:
layer3/Selector.cpp:9622:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 9622 |   while(ok && c < word.size()) {
      |               ~~^~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘DistSet* SelectorGetDistSet(PyMOLGlobals*, DistSet*, int, int, int, int, int, float, float*)’:
layer3/Selector.cpp:10213:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
10213 |     for(a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                           ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘DistSet* SelectorGetAngleSet(PyMOLGlobals*, DistSet*, int, int, int, int, int, int, int, float*, int*)’:
layer3/Selector.cpp:10495:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
10495 |     for(a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                           ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:10519:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
10519 |       for(a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                             ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘DistSet* SelectorGetDihedralSet(PyMOLGlobals*, DistSet*, int, int, int, int, int, int, int, int, int, float*, int*)’:
layer3/Selector.cpp:10724:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
10724 |     for(a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                           ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:10801:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
10801 |         for(a = cNDummyAtoms; a < I->Table.size(); a++) {
      |                               ~~^~~~~~~~~~~~~~~~~
layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = float; SizeTs = {int, int, int, int}]’:
layer3/Selector.cpp:4800:18:   required from here
layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare]
  100 |     assert(sizeof...(pos) <= n_dim());
      |            ~~~~~~~~~~~~~~~^~~~~~~~~~
layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = float; SizeTs = {int, int, int}]’:
layer3/Selector.cpp:5309:20:   required from here
layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare]
layer3/Executive.cpp: In function ‘ExecutiveGroup(PyMOLGlobals*, pymol::zstring_view, pymol::zstring_view, int, int)’:
layer3/Executive.cpp:2259:40: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 235 [-Wformat-truncation=]
 2259 |                   " Executive: adding '%s' to group '%s'.\n", rec.name, rec.group_name
      |                                        ^~
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 36 and 546 bytes into a destination of size 255
  274 |     (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |               ^
layer3/Executive.cpp: In function ‘ExecutiveSetName(PyMOLGlobals*, pymol::zstring_view, pymol::zstring_view, bool)’:
layer3/Executive.cpp:3523:41: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 222 [-Wformat-truncation=]
 3523 |       " Warning: Invalid characters in '%s' have been replaced or stripped\n",
      |                                         ^~
 3524 |       name ENDFB(G);
      |       ~~~~                               
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 67 and 322 bytes into a destination of size 255
  274 |     (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |               ^
layer3/Executive.cpp: In function ‘ExecutiveSetSession(PyMOLGlobals*, _object*, int, int)’:
layer3/Executive.cpp:5070:57: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 213 [-Wformat-truncation=]
 5070 |             " Executive: skipping unrecognized object \"%s\" of type %d.\n",
      |                                                         ^~
In function ‘ExecutiveSetNamedEntries(PyMOLGlobals*, _object*, int, int, int)’,
    inlined from ‘ExecutiveSetSession(PyMOLGlobals*, _object*, int, int)’ at layer3/Executive.cpp:5696:38:
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 56 and 321 bytes into a destination of size 255
  274 |     (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |               ^
layer3/Executive.cpp: In function ‘ExecutiveSetSession(PyMOLGlobals*, _object*, int, int)’:
layer3/Executive.cpp:5095:58: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 210 [-Wformat-truncation=]
 5095 |           "ExectiveSetNamedEntries-Error: after object \"%s\".\n", rec->name ENDFB(G);
      |                                                          ^~
In function ‘ExecutiveSetNamedEntries(PyMOLGlobals*, _object*, int, int, int)’,
    inlined from ‘ExecutiveSetSession(PyMOLGlobals*, _object*, int, int)’ at layer3/Executive.cpp:5696:38:
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 49 and 304 bytes into a destination of size 255
  274 |     (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
      |               ^
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer3/ExecutivePython.cpp -o build/temp.linux-x86_64-cpython-311/layer3/ExecutivePython.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer3/Selector.cpp: In function ‘SelectorAssignSS(PyMOLGlobals*, int, int, int, int, ObjectMolecule*, int)’:
layer3/Selector.cpp:1722:70: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 207 [-Wformat-truncation=]
 1722 |                     " AssignSS-Warning: Ignoring incomplete residue /%s/%s/%s/%d%c ...\n",
      |                                                                      ^~
In file included from /usr/include/stdio.h:906,
                 from /usr/include/c++/13/cstdio:42,
                 from /usr/include/c++/13/ext/string_conversions.h:45,
                 from /usr/include/c++/13/bits/basic_string.h:4072,
                 from /usr/include/c++/13/string:54,
                 from layer3/Selector.cpp:20:
In function ‘snprintf’,
    inlined from ‘SelectorAssignSS(PyMOLGlobals*, int, int, int, int, ObjectMolecule*, int)’ at layer3/Selector.cpp:1721:19:
/usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 59 and 324 bytes into a destination of size 255
   54 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   55 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   56 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
layer3/ExecutivePython.cpp: In function ‘pymol::Result<> ExecutiveSetRawAlignment(PyMOLGlobals*, pymol::zstring_view, PyObject*, pymol::zstring_view, int, int)’:
layer3/ExecutivePython.cpp:171:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘long int’ [-Wsign-compare]
  171 |   for(size_t c = 0; c < n_cols; ++c) {
      |                     ~~^~~~~~~~
layer3/ExecutivePython.cpp:180:25: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘long int’ [-Wsign-compare]
  180 |     for(size_t i = 0; i < n_idx; ++i) {
      |                       ~~^~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer3/MaeExportHelpers.cpp -o build/temp.linux-x86_64-cpython-311/layer3/MaeExportHelpers.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In file included from layer2/AtomInfo.h:23,
                 from layer3/MaeExportHelpers.h:11,
                 from layer3/MaeExportHelpers.cpp:11:
In function ‘SettingUniqueGetTypedValuePtr(PyMOLGlobals*, int, int, int, bool*)’,
    inlined from ‘SettingUniqueGetIfDefined<bool>(PyMOLGlobals*, int, int, bool*)bool’ at layer1/Setting.h:447:39,
    inlined from ‘AtomSettingGetIfDefined<bool, AtomInfoType const>(PyMOLGlobals*, AtomInfoType const*, int, bool*)bool’ at layer2/AtomInfo.h:496:33,
    inlined from ‘AtomSettingGetWD<bool, AtomInfoType const>(PyMOLGlobals*, AtomInfoType const*, int, bool)bool’ at layer2/AtomInfo.h:506:36,
    inlined from ‘SettingGet<bool>(PyMOLGlobals*, SeleCoordIterator const&, int)bool’ at layer3/MaeExportHelpers.cpp:24:26,
    inlined from ‘MaeExportGetAtomStyle(PyMOLGlobals*, SeleCoordIterator const&)’ at layer3/MaeExportHelpers.cpp:73:26:
layer1/Setting.h:436:11: warning: ‘out’ may be used uninitialized [-Wmaybe-uninitialized]
  436 |   int i = *out;
      |           ^~~~
layer2/AtomInfo.h: In function ‘MaeExportGetAtomStyle(PyMOLGlobals*, SeleCoordIterator const&)’:
layer2/AtomInfo.h:505:5: note: ‘out’ was declared here
  505 |   V out;
      |     ^~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer3/SelectorTmp.cpp -o build/temp.linux-x86_64-cpython-311/layer3/SelectorTmp.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer3/SpecRec.cpp -o build/temp.linux-x86_64-cpython-311/layer3/SpecRec.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer3/SpecRecSpecial.cpp -o build/temp.linux-x86_64-cpython-311/layer3/SpecRecSpecial.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer4/Cmd.cpp -o build/temp.linux-x86_64-cpython-311/layer4/Cmd.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer4/Cmd.cpp: In function ‘PyObject* CmdPushUndo(PyObject*, PyObject*)’:
layer4/Cmd.cpp:2216:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2216 |     if(ok)
      |     ^~
layer4/Cmd.cpp:2218:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2218 |       if(s0[0])
      |       ^~
layer4/Cmd.cpp: In function ‘PyObject* CmdGetMinMax(PyObject*, PyObject*)’:
layer4/Cmd.cpp:4469:7: warning: variable ‘ok’ set but not used [-Wunused-but-set-variable]
 4469 |   int ok = false;
      |       ^~
In file included from layer4/Cmd.cpp:77:
layer1/PConv.h: In instantiation of ‘PyObject* PConvToPyObject(const std::array<_Tp, _Nm>&) [with T = float; long unsigned int N = 3; PyObject = _object]’:
layer4/Cmd.cpp:380:27:   required from ‘PyObject* APIResult(PyMOLGlobals*, pymol::Result<T>&) [with T = std::array<float, 3>; PyObject = _object]’
layer4/Cmd.cpp:4034:19:   required from here
layer1/PConv.h:259:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
  259 |   for (int i = 0; i < N; ++i) {
      |                   ~~^~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer4/Menu.cpp -o build/temp.linux-x86_64-cpython-311/layer4/Menu.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer4/PopUp.cpp -o build/temp.linux-x86_64-cpython-311/layer4/PopUp.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In file included from layer0/OOMac.h:22,
                 from layer4/PopUp.cpp:23:
layer4/PopUp.cpp: In function ‘void PopUpFree(Block*)’:
layer0/MemoryDebug.h:86:32: warning: deleting object of polymorphic class type ‘CPopUp’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
   86 | #define DeleteP(ptr) {if(ptr) {delete ptr;ptr=NULL;}}
layer4/PopUp.cpp:401:3: note: in expansion of macro ‘DeleteP’
  401 |   DeleteP(I);
      |   ^~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer5/PyMOL.cpp -o build/temp.linux-x86_64-cpython-311/layer5/PyMOL.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer5/PyMOL.cpp: In function ‘PyMOLreturn_status Loader(CPyMOL*, const char*, const char*, int, const char*, const char*, int, int, int, int, int, int)’:
layer5/PyMOL.cpp:1546:27: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘long unsigned int’ [-Wsign-compare]
 1546 |         if((stop - start) >= sizeof(WordType))
      |            ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
In file included from layer5/PyMOL.cpp:23:
layer5/PyMOL.cpp: In function ‘void PyMOL_Stop(CPyMOL*)’:
layer0/MemoryDebug.h:86:32: warning: deleting object of polymorphic class type ‘CMovie’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
   86 | #define DeleteP(ptr) {if(ptr) {delete ptr;ptr=NULL;}}
layer5/PyMOL.cpp:1987:3: note: in expansion of macro ‘DeleteP’
 1987 |   DeleteP(G->Movie);
      |   ^~~~~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer5/TestPyMOL.cpp -o build/temp.linux-x86_64-cpython-311/layer5/TestPyMOL.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD layer5/main.cpp -o build/temp.linux-x86_64-cpython-311/layer5/main.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD ov/src/OVContext.cpp -o build/temp.linux-x86_64-cpython-311/ov/src/OVContext.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
ov/src/OVContext.cpp: In function ‘void OVContext_Del(OVContext*)’:
ov/src/OVContext.cpp:21:13: warning: variable ‘heap’ set but not used [-Wunused-but-set-variable]
   21 |     OVHeap *heap = I->heap;
      |             ^~~~
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD ov/src/OVHeap.cpp -o build/temp.linux-x86_64-cpython-311/ov/src/OVHeap.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD ov/src/OVHeapArray.cpp -o build/temp.linux-x86_64-cpython-311/ov/src/OVHeapArray.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD ov/src/OVLexicon.cpp -o build/temp.linux-x86_64-cpython-311/ov/src/OVLexicon.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD ov/src/OVOneToAny.cpp -o build/temp.linux-x86_64-cpython-311/ov/src/OVOneToAny.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD ov/src/OVOneToOne.cpp -o build/temp.linux-x86_64-cpython-311/ov/src/OVOneToOne.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD ov/src/OVRandom.cpp -o build/temp.linux-x86_64-cpython-311/ov/src/OVRandom.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.11/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.11 -c -MMD ov/src/ov_utility.cpp -o build/temp.linux-x86_64-cpython-311/ov/src/ov_utility.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++11 -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-x86_64-cpython-311/build/generated/ShaderText.o build/temp.linux-x86_64-cpython-311/contrib/mmtf-c/mmtf_parser.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/avsplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/binposplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/carplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/corplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/crdplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/dxplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/edmplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/grdplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/gridplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/hash.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/inthash.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/jsplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/mapplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/offplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/parmplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/phiplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/pltplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/plyplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/psfplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/situsplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/stlplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.o build/temp.linux-x86_64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.o build/temp.linux-x86_64-cpython-311/layer0/Block.o build/temp.linux-x86_64-cpython-311/layer0/CarveHelper.o build/temp.linux-x86_64-cpython-311/layer0/ContourSurf.o build/temp.linux-x86_64-cpython-311/layer0/Crystal.o build/temp.linux-x86_64-cpython-311/layer0/Deferred.o build/temp.linux-x86_64-cpython-311/layer0/Err.o build/temp.linux-x86_64-cpython-311/layer0/Feedback.o build/temp.linux-x86_64-cpython-311/layer0/Field.o build/temp.linux-x86_64-cpython-311/layer0/File.o build/temp.linux-x86_64-cpython-311/layer0/GenericBuffer.o build/temp.linux-x86_64-cpython-311/layer0/GraphicsUtil.o build/temp.linux-x86_64-cpython-311/layer0/Isosurf.o build/temp.linux-x86_64-cpython-311/layer0/Map.o build/temp.linux-x86_64-cpython-311/layer0/Match.o build/temp.linux-x86_64-cpython-311/layer0/Matrix.o build/temp.linux-x86_64-cpython-311/layer0/MemoryDebug.o build/temp.linux-x86_64-cpython-311/layer0/MemoryUsage.o build/temp.linux-x86_64-cpython-311/layer0/MyPNG.o build/temp.linux-x86_64-cpython-311/layer0/Parse.o build/temp.linux-x86_64-cpython-311/layer0/Pixmap.o build/temp.linux-x86_64-cpython-311/layer0/PostProcess.o build/temp.linux-x86_64-cpython-311/layer0/ShaderMgr.o build/temp.linux-x86_64-cpython-311/layer0/ShaderPrg.o build/temp.linux-x86_64-cpython-311/layer0/Sphere.o build/temp.linux-x86_64-cpython-311/layer0/Tetsurf.o build/temp.linux-x86_64-cpython-311/layer0/Texture.o build/temp.linux-x86_64-cpython-311/layer0/Tracker.o build/temp.linux-x86_64-cpython-311/layer0/Triangle.o build/temp.linux-x86_64-cpython-311/layer0/Util.o build/temp.linux-x86_64-cpython-311/layer0/Util2.o build/temp.linux-x86_64-cpython-311/layer0/Vector.o build/temp.linux-x86_64-cpython-311/layer0/Word.o build/temp.linux-x86_64-cpython-311/layer0/ccealignmodule.o build/temp.linux-x86_64-cpython-311/layer0/marching_cubes.o build/temp.linux-x86_64-cpython-311/layer0/os_gl.o build/temp.linux-x86_64-cpython-311/layer1/Basis.o build/temp.linux-x86_64-cpython-311/layer1/ButMode.o build/temp.linux-x86_64-cpython-311/layer1/CGO.o build/temp.linux-x86_64-cpython-311/layer1/COLLADA.o build/temp.linux-x86_64-cpython-311/layer1/Character.o build/temp.linux-x86_64-cpython-311/layer1/Color.o build/temp.linux-x86_64-cpython-311/layer1/Control.o build/temp.linux-x86_64-cpython-311/layer1/Extrude.o build/temp.linux-x86_64-cpython-311/layer1/Font.o build/temp.linux-x86_64-cpython-311/layer1/FontGLUT.o build/temp.linux-x86_64-cpython-311/layer1/FontGLUT8x13.o build/temp.linux-x86_64-cpython-311/layer1/FontGLUT9x15.o build/temp.linux-x86_64-cpython-311/layer1/FontGLUTHel10.o build/temp.linux-x86_64-cpython-311/layer1/FontGLUTHel12.o build/temp.linux-x86_64-cpython-311/layer1/FontGLUTHel18.o build/temp.linux-x86_64-cpython-311/layer1/FontType.o build/temp.linux-x86_64-cpython-311/layer1/Movie.o build/temp.linux-x86_64-cpython-311/layer1/Ortho.o build/temp.linux-x86_64-cpython-311/layer1/P.o build/temp.linux-x86_64-cpython-311/layer1/PConv.o build/temp.linux-x86_64-cpython-311/layer1/Picking.o build/temp.linux-x86_64-cpython-311/layer1/Pop.o build/temp.linux-x86_64-cpython-311/layer1/PyMOLObject.o build/temp.linux-x86_64-cpython-311/layer1/Ray.o build/temp.linux-x86_64-cpython-311/layer1/Rep.o build/temp.linux-x86_64-cpython-311/layer1/Scene.o build/temp.linux-x86_64-cpython-311/layer1/SceneMouse.o build/temp.linux-x86_64-cpython-311/layer1/ScenePicking.o build/temp.linux-x86_64-cpython-311/layer1/SceneRay.o build/temp.linux-x86_64-cpython-311/layer1/SceneRender.o build/temp.linux-x86_64-cpython-311/layer1/ScrollBar.o build/temp.linux-x86_64-cpython-311/layer1/Seq.o build/temp.linux-x86_64-cpython-311/layer1/Setting.o build/temp.linux-x86_64-cpython-311/layer1/Shaker.o build/temp.linux-x86_64-cpython-311/layer1/SymOp.o build/temp.linux-x86_64-cpython-311/layer1/SymOpPConv.o build/temp.linux-x86_64-cpython-311/layer1/SymOpTools.o build/temp.linux-x86_64-cpython-311/layer1/Symmetry.o build/temp.linux-x86_64-cpython-311/layer1/Text.o build/temp.linux-x86_64-cpython-311/layer1/TypeFace.o build/temp.linux-x86_64-cpython-311/layer1/View.o build/temp.linux-x86_64-cpython-311/layer1/Wizard.o build/temp.linux-x86_64-cpython-311/layer2/AssemblyHelpers.o build/temp.linux-x86_64-cpython-311/layer2/AtomInfo.o build/temp.linux-x86_64-cpython-311/layer2/AtomInfoHistory.o build/temp.linux-x86_64-cpython-311/layer2/BondTypeHistory.o build/temp.linux-x86_64-cpython-311/layer2/CifFile.o build/temp.linux-x86_64-cpython-311/layer2/CifMoleculeReader.o build/temp.linux-x86_64-cpython-311/layer2/CoordSet.o build/temp.linux-x86_64-cpython-311/layer2/DistSet.o build/temp.linux-x86_64-cpython-311/layer2/GadgetSet.o build/temp.linux-x86_64-cpython-311/layer2/HydrogenAdder.o build/temp.linux-x86_64-cpython-311/layer2/MmodTyping.o build/temp.linux-x86_64-cpython-311/layer2/MmtfMoleculeReader.o build/temp.linux-x86_64-cpython-311/layer2/Mol2Typing.o build/temp.linux-x86_64-cpython-311/layer2/MolV3000.o build/temp.linux-x86_64-cpython-311/layer2/ObjectAlignment.o build/temp.linux-x86_64-cpython-311/layer2/ObjectCGO.o build/temp.linux-x86_64-cpython-311/layer2/ObjectCallback.o build/temp.linux-x86_64-cpython-311/layer2/ObjectDist.o build/temp.linux-x86_64-cpython-311/layer2/ObjectGadget.o build/temp.linux-x86_64-cpython-311/layer2/ObjectGadgetRamp.o build/temp.linux-x86_64-cpython-311/layer2/ObjectGroup.o build/temp.linux-x86_64-cpython-311/layer2/ObjectMap.o build/temp.linux-x86_64-cpython-311/layer2/ObjectMesh.o build/temp.linux-x86_64-cpython-311/layer2/ObjectMolecule.o build/temp.linux-x86_64-cpython-311/layer2/ObjectMolecule2.o build/temp.linux-x86_64-cpython-311/layer2/ObjectMolecule3.o build/temp.linux-x86_64-cpython-311/layer2/ObjectSlice.o build/temp.linux-x86_64-cpython-311/layer2/ObjectSurface.o build/temp.linux-x86_64-cpython-311/layer2/ObjectVolume.o build/temp.linux-x86_64-cpython-311/layer2/RepAngle.o build/temp.linux-x86_64-cpython-311/layer2/RepCartoon.o build/temp.linux-x86_64-cpython-311/layer2/RepCylBond.o build/temp.linux-x86_64-cpython-311/layer2/RepDihedral.o build/temp.linux-x86_64-cpython-311/layer2/RepDistDash.o build/temp.linux-x86_64-cpython-311/layer2/RepDistLabel.o build/temp.linux-x86_64-cpython-311/layer2/RepDot.o build/temp.linux-x86_64-cpython-311/layer2/RepEllipsoid.o build/temp.linux-x86_64-cpython-311/layer2/RepLabel.o build/temp.linux-x86_64-cpython-311/layer2/RepMesh.o build/temp.linux-x86_64-cpython-311/layer2/RepNonbonded.o build/temp.linux-x86_64-cpython-311/layer2/RepNonbondedSphere.o build/temp.linux-x86_64-cpython-311/layer2/RepRibbon.o build/temp.linux-x86_64-cpython-311/layer2/RepSphere.o build/temp.linux-x86_64-cpython-311/layer2/RepSphereGenerate.o build/temp.linux-x86_64-cpython-311/layer2/RepSphereImmediate.o build/temp.linux-x86_64-cpython-311/layer2/RepSurface.o build/temp.linux-x86_64-cpython-311/layer2/RepWireBond.o build/temp.linux-x86_64-cpython-311/layer2/Sculpt.o build/temp.linux-x86_64-cpython-311/layer2/SculptCache.o build/temp.linux-x86_64-cpython-311/layer2/SideChainHelper.o build/temp.linux-x86_64-cpython-311/layer2/VFont.o build/temp.linux-x86_64-cpython-311/layer3/AtomIterators.o build/temp.linux-x86_64-cpython-311/layer3/CifDataValueFormatter.o build/temp.linux-x86_64-cpython-311/layer3/Editor.o build/temp.linux-x86_64-cpython-311/layer3/Executive.o build/temp.linux-x86_64-cpython-311/layer3/ExecutivePython.o build/temp.linux-x86_64-cpython-311/layer3/MaeExportHelpers.o build/temp.linux-x86_64-cpython-311/layer3/MoleculeExporter.o build/temp.linux-x86_64-cpython-311/layer3/MovieScene.o build/temp.linux-x86_64-cpython-311/layer3/PlugIOManager.o build/temp.linux-x86_64-cpython-311/layer3/RingFinder.o build/temp.linux-x86_64-cpython-311/layer3/Seeker.o build/temp.linux-x86_64-cpython-311/layer3/Selector.o build/temp.linux-x86_64-cpython-311/layer3/SelectorTmp.o build/temp.linux-x86_64-cpython-311/layer3/SpecRec.o build/temp.linux-x86_64-cpython-311/layer3/SpecRecSpecial.o build/temp.linux-x86_64-cpython-311/layer4/Cmd.o build/temp.linux-x86_64-cpython-311/layer4/Menu.o build/temp.linux-x86_64-cpython-311/layer4/PopUp.o build/temp.linux-x86_64-cpython-311/layer5/PyMOL.o build/temp.linux-x86_64-cpython-311/layer5/TestPyMOL.o build/temp.linux-x86_64-cpython-311/layer5/main.o build/temp.linux-x86_64-cpython-311/ov/src/OVContext.o build/temp.linux-x86_64-cpython-311/ov/src/OVHeap.o build/temp.linux-x86_64-cpython-311/ov/src/OVHeapArray.o build/temp.linux-x86_64-cpython-311/ov/src/OVLexicon.o build/temp.linux-x86_64-cpython-311/ov/src/OVOneToAny.o build/temp.linux-x86_64-cpython-311/ov/src/OVOneToOne.o build/temp.linux-x86_64-cpython-311/ov/src/OVRandom.o build/temp.linux-x86_64-cpython-311/ov/src/ov_utility.o -L/usr/lib64 -L/usr/lib -L/usr/lib64 -lpng -lfreetype -lxml2 -lGL -lGLEW -lnetcdf -o build/lib.linux-x86_64-cpython-311/pymol/_cmd.cpython-311-x86_64-linux-gnu.so -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:62:16: warning: type ‘struct parm’ violates the C++ One Definition Rule [-Wodr]
   62 | typedef struct parm {
      |                ^
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:59:16: note: a different type is defined in another translation unit
   59 | typedef struct parm {
      |                ^
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:63:8: note: the first difference of corresponding definitions is field ‘title’
   63 |   char title[85];
      |        ^
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:60:17: note: a field with different name is defined in another translation unit
   60 |         char    ititl[81];
      |                 ^
contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp:33:3: warning: type ‘struct parmdata’ violates the C++ One Definition Rule [-Wodr]
   33 | } parmdata;
      |   ^
contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp:32:3: note: a different type is defined in another translation unit
   32 | } parmdata;
      |   ^
contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp:28:15: note: the first difference of corresponding definitions is field ‘prm’
   28 |   parmstruct *prm;
      |               ^
contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp:28:13: note: a field with different name is defined in another translation unit
   28 |   ReadPARM *rp;
      |             ^
layer0/Isosurf.cpp:47:16: warning: type ‘struct PointType’ violates the C++ One Definition Rule [-Wodr]
   47 | typedef struct PointType {
      |                ^
layer0/Tetsurf.cpp:46:3: note: a different type is defined in another translation unit
   46 | } PointType;
      |   ^
layer0/Isosurf.cpp:49:7: note: the first difference of corresponding definitions is field ‘NLink’
   49 |   int NLink;
      |       ^
layer0/Tetsurf.cpp:43:9: note: a field with different name is defined in another translation unit
   43 |   float Normal[3];
      |         ^
ov/src/OVOneToAny.cpp:15:3: warning: type ‘struct up_element’ violates the C++ One Definition Rule [-Wodr]
   15 | } up_element;
      |   ^
ov/src/OVOneToOne.cpp:15:3: note: a different type is defined in another translation unit
   15 | } up_element;
      |   ^
ov/src/OVOneToOne.cpp:14:25: note: the first difference of corresponding definitions is field ‘reverse_next’
   14 |   ov_size forward_next, reverse_next;
      |                         ^
ov/src/OVOneToOne.cpp:15:3: note: a type with different number of fields is defined in another translation unit
   15 | } up_element;
      |   ^
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function ‘recreate_command_line’:
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1334:11: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=]
 1334 |   line[0] = '\0';
      |           ^
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1333:26: note: destination object of size 0 allocated by ‘malloc’
 1333 |   line = (char *) malloc (sizeof(char) * len);
      |                          ^
layer3/Executive.cpp: In function ‘ExecutiveManageObject’:
layer3/Executive.cpp:14473:11: warning: ‘strcpy’ writing between 1 and 256 bytes into a region of size 0 overflows the destination [-Wstringop-overflow=]
14473 |     strcpy(rec->name, obj->Name);
      |           ^
lto1: note: destination object is likely at address zero
building 'chempy.champ._champ' extension
creating build/temp.linux-x86_64-cpython-311/contrib/champ
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -Icontrib/champ -I/usr/include/python3.11 -c -MMD contrib/champ/champ.c -o build/temp.linux-x86_64-cpython-311/contrib/champ/champ.o
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -Icontrib/champ -I/usr/include/python3.11 -c -MMD contrib/champ/chiral.c -o build/temp.linux-x86_64-cpython-311/contrib/champ/chiral.o
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -Icontrib/champ -I/usr/include/python3.11 -c -MMD contrib/champ/err2.c -o build/temp.linux-x86_64-cpython-311/contrib/champ/err2.o
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -Icontrib/champ -I/usr/include/python3.11 -c -MMD contrib/champ/feedback2.c -o build/temp.linux-x86_64-cpython-311/contrib/champ/feedback2.o
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -Icontrib/champ -I/usr/include/python3.11 -c -MMD contrib/champ/list.c -o build/temp.linux-x86_64-cpython-311/contrib/champ/list.o
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -Icontrib/champ -I/usr/include/python3.11 -c -MMD contrib/champ/os_memory.c -o build/temp.linux-x86_64-cpython-311/contrib/champ/os_memory.o
contrib/champ/os_memory.c: In function ‘OSMemoryZero’:
contrib/champ/os_memory.c:55:18: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
   55 |   while(count&&(((int)p)&mask)) {
      |                  ^
contrib/champ/os_memory.c: In function ‘OSMemoryHashAdd’:
contrib/champ/os_memory.c:137:8: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
  137 |   hash=(int)rec;
      |        ^
contrib/champ/os_memory.c: In function ‘OSMemoryHashRemove’:
contrib/champ/os_memory.c:150:8: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
  150 |   hash=(int)rec;
      |        ^
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -Icontrib/champ -I/usr/include/python3.11 -c -MMD contrib/champ/sort.c -o build/temp.linux-x86_64-cpython-311/contrib/champ/sort.o
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -Icontrib/champ -I/usr/include/python3.11 -c -MMD contrib/champ/strblock.c -o build/temp.linux-x86_64-cpython-311/contrib/champ/strblock.o
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -Icontrib/champ -I/usr/include/python3.11 -c -MMD contrib/champ/vla.c -o build/temp.linux-x86_64-cpython-311/contrib/champ/vla.o
gcc -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -U_FORTIFY_SOURCE -Wp,-U_FORTIFY_SOURCE -Wp,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -Icontrib/champ -I/usr/include/python3.11 -c -MMD contrib/champ/champ_module.c -o build/temp.linux-x86_64-cpython-311/contrib/champ/champ_module.o
gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-x86_64-cpython-311/contrib/champ/champ.o build/temp.linux-x86_64-cpython-311/contrib/champ/champ_module.o build/temp.linux-x86_64-cpython-311/contrib/champ/chiral.o build/temp.linux-x86_64-cpython-311/contrib/champ/err2.o build/temp.linux-x86_64-cpython-311/contrib/champ/feedback2.o build/temp.linux-x86_64-cpython-311/contrib/champ/list.o build/temp.linux-x86_64-cpython-311/contrib/champ/os_memory.o build/temp.linux-x86_64-cpython-311/contrib/champ/sort.o build/temp.linux-x86_64-cpython-311/contrib/champ/strblock.o build/temp.linux-x86_64-cpython-311/contrib/champ/vla.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-311/chempy/champ/_champ.cpython-311-x86_64-linux-gnu.so
Exception ignored in: <function Pool.__del__ at 0x7ff2de008040>
Traceback (most recent call last):
  File "/usr/lib64/python3.11/multiprocessing/pool.py", line 271, in __del__
  File "/usr/lib64/python3.11/multiprocessing/queues.py", line 377, in put
  File "/usr/lib64/python3.11/multiprocessing/connection.py", line 199, in send_bytes
  File "/usr/lib64/python3.11/multiprocessing/connection.py", line 399, in _send_bytes
AttributeError: 'NoneType' object has no attribute 'pack'
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.z0kJz8
+ umask 022
+ cd /builddir/build/BUILD
+ '[' /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64 '!=' / ']'
+ rm -rf /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64
++ dirname /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer'
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer'
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules'
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes'
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd pymol-open-source-2.5.0
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer'
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes'
+ /usr/bin/python3 setup.py install -O1 --skip-build --root /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64 --prefix /usr --use-msgpackc=c++11 --use-openmp=yes --pymol-path=/usr/lib64/python3.11/site-packages/pymol
running install
running install_lib
creating /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr
creating /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64
creating /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11
creating /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages
creating /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy
creating /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/bmin
copying build/lib.linux-x86_64-cpython-311/chempy/bmin/__init__.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/bmin
copying build/lib.linux-x86_64-cpython-311/chempy/bmin/commands.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/bmin
copying build/lib.linux-x86_64-cpython-311/chempy/bmin/realtime.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/bmin
copying build/lib.linux-x86_64-cpython-311/chempy/bmin/state.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/bmin
copying build/lib.linux-x86_64-cpython-311/chempy/bmin/util.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/bmin
creating /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/champ
copying build/lib.linux-x86_64-cpython-311/chempy/champ/_champ.cpython-311-x86_64-linux-gnu.so -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/champ
copying build/lib.linux-x86_64-cpython-311/chempy/champ/__init__.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/champ
copying build/lib.linux-x86_64-cpython-311/chempy/champ/amber99.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/champ
copying build/lib.linux-x86_64-cpython-311/chempy/champ/assign.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/champ
copying build/lib.linux-x86_64-cpython-311/chempy/champ/formal_charges.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/champ
creating /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/fast
copying build/lib.linux-x86_64-cpython-311/chempy/fast/__init__.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/fast
creating /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/fragments
copying build/lib.linux-x86_64-cpython-311/chempy/fragments/__init__.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/fragments
creating /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/mmtf
copying build/lib.linux-x86_64-cpython-311/chempy/mmtf/__init__.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/mmtf
copying build/lib.linux-x86_64-cpython-311/chempy/mmtf/io.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/mmtf
creating /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/tinker
copying build/lib.linux-x86_64-cpython-311/chempy/tinker/__init__.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/tinker
copying build/lib.linux-x86_64-cpython-311/chempy/tinker/amber.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/tinker
copying build/lib.linux-x86_64-cpython-311/chempy/tinker/keyword.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/tinker
copying build/lib.linux-x86_64-cpython-311/chempy/tinker/realtime.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/tinker
copying build/lib.linux-x86_64-cpython-311/chempy/tinker/state.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/tinker
copying build/lib.linux-x86_64-cpython-311/chempy/__init__.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-x86_64-cpython-311/chempy/arc.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-x86_64-cpython-311/chempy/bond_amber.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-x86_64-cpython-311/chempy/bond_mmff.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-x86_64-cpython-311/chempy/bonds.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-x86_64-cpython-311/chempy/brick.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-x86_64-cpython-311/chempy/cc1.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-x86_64-cpython-311/chempy/charge.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-x86_64-cpython-311/chempy/cif.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-x86_64-cpython-311/chempy/cpv.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-x86_64-cpython-311/chempy/dictdb.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-x86_64-cpython-311/chempy/gamess1.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-x86_64-cpython-311/chempy/gms.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-x86_64-cpython-311/chempy/hetatm.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-x86_64-cpython-311/chempy/io.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-x86_64-cpython-311/chempy/lst.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-x86_64-cpython-311/chempy/mae.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-x86_64-cpython-311/chempy/map.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-x86_64-cpython-311/chempy/mass.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-x86_64-cpython-311/chempy/mmd.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-x86_64-cpython-311/chempy/models.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-x86_64-cpython-311/chempy/mol.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-x86_64-cpython-311/chempy/mol2.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-x86_64-cpython-311/chempy/neighbor.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-x86_64-cpython-311/chempy/pdb.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-x86_64-cpython-311/chempy/pkl.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-x86_64-cpython-311/chempy/place.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-x86_64-cpython-311/chempy/protein.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-x86_64-cpython-311/chempy/protein_amber.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-x86_64-cpython-311/chempy/protein_amber99.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-x86_64-cpython-311/chempy/protein_mmff.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-x86_64-cpython-311/chempy/protein_residues.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-x86_64-cpython-311/chempy/sdf.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-x86_64-cpython-311/chempy/solvate.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-x86_64-cpython-311/chempy/water_amber.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-x86_64-cpython-311/chempy/water_residues.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy
copying build/lib.linux-x86_64-cpython-311/chempy/xyz.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy
creating /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt
creating /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/forms
copying build/lib.linux-x86_64-cpython-311/pmg_qt/forms/askpartial.ui -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/forms
copying build/lib.linux-x86_64-cpython-311/pmg_qt/forms/change_confirm.ui -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/forms
copying build/lib.linux-x86_64-cpython-311/pmg_qt/forms/colors.ui -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/forms
copying build/lib.linux-x86_64-cpython-311/pmg_qt/forms/create_shortcut.ui -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/forms
copying build/lib.linux-x86_64-cpython-311/pmg_qt/forms/fetch.ui -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/forms
copying build/lib.linux-x86_64-cpython-311/pmg_qt/forms/help_shortcut.ui -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/forms
copying build/lib.linux-x86_64-cpython-311/pmg_qt/forms/load_aln.ui -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/forms
copying build/lib.linux-x86_64-cpython-311/pmg_qt/forms/load_mae.ui -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/forms
copying build/lib.linux-x86_64-cpython-311/pmg_qt/forms/load_map.ui -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/forms
copying build/lib.linux-x86_64-cpython-311/pmg_qt/forms/load_mtz.ui -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/forms
copying build/lib.linux-x86_64-cpython-311/pmg_qt/forms/load_traj.ui -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/forms
copying build/lib.linux-x86_64-cpython-311/pmg_qt/forms/movieexport.ui -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/forms
copying build/lib.linux-x86_64-cpython-311/pmg_qt/forms/pluginitem.ui -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/forms
copying build/lib.linux-x86_64-cpython-311/pmg_qt/forms/pluginmanager.ui -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/forms
copying build/lib.linux-x86_64-cpython-311/pmg_qt/forms/png.ui -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/forms
copying build/lib.linux-x86_64-cpython-311/pmg_qt/forms/props.ui -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/forms
copying build/lib.linux-x86_64-cpython-311/pmg_qt/forms/render.ui -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/forms
copying build/lib.linux-x86_64-cpython-311/pmg_qt/forms/save_molecule.ui -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/forms
copying build/lib.linux-x86_64-cpython-311/pmg_qt/forms/save_object.ui -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/forms
copying build/lib.linux-x86_64-cpython-311/pmg_qt/forms/shortcut_menu.ui -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/forms
copying build/lib.linux-x86_64-cpython-311/pmg_qt/forms/__init__.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/forms
creating /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/syntax
copying build/lib.linux-x86_64-cpython-311/pmg_qt/syntax/__init__.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/syntax
copying build/lib.linux-x86_64-cpython-311/pmg_qt/syntax/pml.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/syntax
copying build/lib.linux-x86_64-cpython-311/pmg_qt/syntax/pmlparser.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/syntax
copying build/lib.linux-x86_64-cpython-311/pmg_qt/syntax/python.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/syntax
copying build/lib.linux-x86_64-cpython-311/pmg_qt/TextEditor.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt
copying build/lib.linux-x86_64-cpython-311/pmg_qt/__init__.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt
copying build/lib.linux-x86_64-cpython-311/pmg_qt/advanced_settings_gui.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt
copying build/lib.linux-x86_64-cpython-311/pmg_qt/builder.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt
copying build/lib.linux-x86_64-cpython-311/pmg_qt/file_dialogs.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt
copying build/lib.linux-x86_64-cpython-311/pmg_qt/keymapping.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt
copying build/lib.linux-x86_64-cpython-311/pmg_qt/mimic_pmg_tk.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt
copying build/lib.linux-x86_64-cpython-311/pmg_qt/mimic_tk.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt
copying build/lib.linux-x86_64-cpython-311/pmg_qt/properties_dialog.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt
copying build/lib.linux-x86_64-cpython-311/pmg_qt/pymol_gl_widget.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt
copying build/lib.linux-x86_64-cpython-311/pmg_qt/pymol_qt_gui.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt
copying build/lib.linux-x86_64-cpython-311/pmg_qt/shortcut_menu_gui.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt
copying build/lib.linux-x86_64-cpython-311/pmg_qt/volume.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt
creating /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_tk
creating /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_tk/skins
creating /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_tk/skins/demo
copying build/lib.linux-x86_64-cpython-311/pmg_tk/skins/demo/__init__.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_tk/skins/demo
creating /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_tk/skins/normal
copying build/lib.linux-x86_64-cpython-311/pmg_tk/skins/normal/ModalWindow.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_tk/skins/normal
copying build/lib.linux-x86_64-cpython-311/pmg_tk/skins/normal/__init__.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_tk/skins/normal
copying build/lib.linux-x86_64-cpython-311/pmg_tk/skins/normal/builder.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_tk/skins/normal
copying build/lib.linux-x86_64-cpython-311/pmg_tk/skins/__init__.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_tk/skins
creating /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_tk/startup
copying build/lib.linux-x86_64-cpython-311/pmg_tk/startup/__init__.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_tk/startup
copying build/lib.linux-x86_64-cpython-311/pmg_tk/ColorEditor.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_tk
copying build/lib.linux-x86_64-cpython-311/pmg_tk/Demo.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_tk
copying build/lib.linux-x86_64-cpython-311/pmg_tk/PyMOLMapLoad.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_tk
copying build/lib.linux-x86_64-cpython-311/pmg_tk/SetEditor.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_tk
copying build/lib.linux-x86_64-cpython-311/pmg_tk/Setting.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_tk
copying build/lib.linux-x86_64-cpython-311/pmg_tk/TextEditor.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_tk
copying build/lib.linux-x86_64-cpython-311/pmg_tk/__init__.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_tk
copying build/lib.linux-x86_64-cpython-311/pmg_tk/volume.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_tk
copying build/lib.linux-x86_64-cpython-311/pmg_tk/PMGApp.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_tk
creating /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/_cmd.cpython-311-x86_64-linux-gnu.so -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
creating /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/Qt
copying build/lib.linux-x86_64-cpython-311/pymol/Qt/__init__.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/Qt
copying build/lib.linux-x86_64-cpython-311/pymol/Qt/utils.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/Qt
creating /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/plugins
copying build/lib.linux-x86_64-cpython-311/pymol/plugins/__init__.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/plugins
copying build/lib.linux-x86_64-cpython-311/pymol/plugins/installation.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/plugins
copying build/lib.linux-x86_64-cpython-311/pymol/plugins/legacysupport.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/plugins
copying build/lib.linux-x86_64-cpython-311/pymol/plugins/managergui.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/plugins
copying build/lib.linux-x86_64-cpython-311/pymol/plugins/managergui_qt.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/plugins
copying build/lib.linux-x86_64-cpython-311/pymol/plugins/repository.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/plugins
creating /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/stereochemistry
copying build/lib.linux-x86_64-cpython-311/pymol/stereochemistry/__init__.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/stereochemistry
creating /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard
copying build/lib.linux-x86_64-cpython-311/pymol/wizard/__init__.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard
copying build/lib.linux-x86_64-cpython-311/pymol/wizard/annotation.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard
copying build/lib.linux-x86_64-cpython-311/pymol/wizard/appearance.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard
copying build/lib.linux-x86_64-cpython-311/pymol/wizard/benchmark.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard
copying build/lib.linux-x86_64-cpython-311/pymol/wizard/box.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard
copying build/lib.linux-x86_64-cpython-311/pymol/wizard/charge.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard
copying build/lib.linux-x86_64-cpython-311/pymol/wizard/cleanup.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard
copying build/lib.linux-x86_64-cpython-311/pymol/wizard/command.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard
copying build/lib.linux-x86_64-cpython-311/pymol/wizard/demo.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard
copying build/lib.linux-x86_64-cpython-311/pymol/wizard/density.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard
copying build/lib.linux-x86_64-cpython-311/pymol/wizard/distance.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard
copying build/lib.linux-x86_64-cpython-311/pymol/wizard/dragging.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard
copying build/lib.linux-x86_64-cpython-311/pymol/wizard/filter.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard
copying build/lib.linux-x86_64-cpython-311/pymol/wizard/label.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard
copying build/lib.linux-x86_64-cpython-311/pymol/wizard/measurement.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard
copying build/lib.linux-x86_64-cpython-311/pymol/wizard/message.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard
copying build/lib.linux-x86_64-cpython-311/pymol/wizard/mutagenesis.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard
copying build/lib.linux-x86_64-cpython-311/pymol/wizard/nucmutagenesis.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard
copying build/lib.linux-x86_64-cpython-311/pymol/wizard/openvr.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard
copying build/lib.linux-x86_64-cpython-311/pymol/wizard/pair_fit.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard
copying build/lib.linux-x86_64-cpython-311/pymol/wizard/pseudoatom.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard
copying build/lib.linux-x86_64-cpython-311/pymol/wizard/renaming.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard
copying build/lib.linux-x86_64-cpython-311/pymol/wizard/sculpting.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard
copying build/lib.linux-x86_64-cpython-311/pymol/wizard/security.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard
copying build/lib.linux-x86_64-cpython-311/pymol/wizard/stereodemo.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard
copying build/lib.linux-x86_64-cpython-311/pymol/wizard/toggle.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard
copying build/lib.linux-x86_64-cpython-311/pymol/__init__.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/__main__.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/_gui.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/api.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/callback.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/cgo.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/checking.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/cmd.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/colorprinting.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/colorramping.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/commanding.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/completing.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/computing.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/constants.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/constants_palette.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/controlling.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/creating.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/diagnosing.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/editing.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/editor.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/experimenting.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/exporting.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/externing.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/feedingback.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/fitting.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/gui.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/headering.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/helping.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/importing.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/internal.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/invocation.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/keyboard.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/keywords.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/lazyio.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/locking.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/menu.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/monitoring.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/morphing.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/movie.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/moving.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/mpeg_encode.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/parser.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/parsing.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/povray.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/preset.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/pymolhttpd.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/querying.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/rpc.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/save_shortcut.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/selecting.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/selector.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/seqalign.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/setting.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/shortcut.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/shortcut_dict.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/shortcut_manager.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/util.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/vfont.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/viewing.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/wizarding.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/xray.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying build/lib.linux-x86_64-cpython-311/pymol/xwin.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
creating /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol2
copying build/lib.linux-x86_64-cpython-311/pymol2/__init__.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol2
copying build/lib.linux-x86_64-cpython-311/pymol2/cmd2.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol2
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/bmin/__init__.py to __init__.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/bmin/commands.py to commands.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/bmin/realtime.py to realtime.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/bmin/state.py to state.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/bmin/util.py to util.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/champ/__init__.py to __init__.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/champ/amber99.py to amber99.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/champ/assign.py to assign.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/champ/formal_charges.py to formal_charges.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/fast/__init__.py to __init__.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/fragments/__init__.py to __init__.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/mmtf/__init__.py to __init__.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/mmtf/io.py to io.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/tinker/__init__.py to __init__.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/tinker/amber.py to amber.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/tinker/keyword.py to keyword.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/tinker/realtime.py to realtime.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/tinker/state.py to state.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/__init__.py to __init__.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/arc.py to arc.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/bond_amber.py to bond_amber.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/bond_mmff.py to bond_mmff.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/bonds.py to bonds.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/brick.py to brick.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/cc1.py to cc1.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/charge.py to charge.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/cif.py to cif.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/cpv.py to cpv.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/dictdb.py to dictdb.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/gamess1.py to gamess1.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/gms.py to gms.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/hetatm.py to hetatm.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/io.py to io.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/lst.py to lst.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/mae.py to mae.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/map.py to map.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/mass.py to mass.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/mmd.py to mmd.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/models.py to models.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/mol.py to mol.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/mol2.py to mol2.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/neighbor.py to neighbor.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/pdb.py to pdb.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/pkl.py to pkl.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/place.py to place.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/protein.py to protein.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/protein_amber.py to protein_amber.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/protein_amber99.py to protein_amber99.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/protein_mmff.py to protein_mmff.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/protein_residues.py to protein_residues.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/sdf.py to sdf.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/solvate.py to solvate.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/water_amber.py to water_amber.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/water_residues.py to water_residues.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/xyz.py to xyz.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/forms/__init__.py to __init__.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/syntax/__init__.py to __init__.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/syntax/pml.py to pml.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/syntax/pmlparser.py to pmlparser.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/syntax/python.py to python.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/TextEditor.py to TextEditor.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/__init__.py to __init__.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/advanced_settings_gui.py to advanced_settings_gui.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/builder.py to builder.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/file_dialogs.py to file_dialogs.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/keymapping.py to keymapping.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/mimic_pmg_tk.py to mimic_pmg_tk.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/mimic_tk.py to mimic_tk.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/properties_dialog.py to properties_dialog.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/pymol_gl_widget.py to pymol_gl_widget.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/pymol_qt_gui.py to pymol_qt_gui.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/shortcut_menu_gui.py to shortcut_menu_gui.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_qt/volume.py to volume.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_tk/skins/demo/__init__.py to __init__.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_tk/skins/normal/ModalWindow.py to ModalWindow.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_tk/skins/normal/__init__.py to __init__.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_tk/skins/normal/builder.py to builder.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_tk/skins/__init__.py to __init__.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_tk/startup/__init__.py to __init__.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_tk/ColorEditor.py to ColorEditor.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_tk/Demo.py to Demo.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_tk/PyMOLMapLoad.py to PyMOLMapLoad.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_tk/SetEditor.py to SetEditor.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_tk/Setting.py to Setting.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_tk/TextEditor.py to TextEditor.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_tk/__init__.py to __init__.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_tk/volume.py to volume.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pmg_tk/PMGApp.py to PMGApp.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/Qt/__init__.py to __init__.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/Qt/utils.py to utils.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/plugins/__init__.py to __init__.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/plugins/installation.py to installation.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/plugins/legacysupport.py to legacysupport.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/plugins/managergui.py to managergui.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/plugins/managergui_qt.py to managergui_qt.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/plugins/repository.py to repository.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/stereochemistry/__init__.py to __init__.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard/__init__.py to __init__.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard/annotation.py to annotation.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard/appearance.py to appearance.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard/benchmark.py to benchmark.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard/box.py to box.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard/charge.py to charge.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard/cleanup.py to cleanup.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard/command.py to command.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard/demo.py to demo.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard/density.py to density.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard/distance.py to distance.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard/dragging.py to dragging.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard/filter.py to filter.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard/label.py to label.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard/measurement.py to measurement.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard/message.py to message.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard/mutagenesis.py to mutagenesis.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard/nucmutagenesis.py to nucmutagenesis.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard/openvr.py to openvr.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard/pair_fit.py to pair_fit.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard/pseudoatom.py to pseudoatom.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard/renaming.py to renaming.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard/sculpting.py to sculpting.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard/security.py to security.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard/stereodemo.py to stereodemo.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizard/toggle.py to toggle.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/__init__.py to __init__.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/__main__.py to __main__.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/_gui.py to _gui.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/api.py to api.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/callback.py to callback.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/cgo.py to cgo.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/checking.py to checking.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/cmd.py to cmd.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/colorprinting.py to colorprinting.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/colorramping.py to colorramping.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/commanding.py to commanding.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/completing.py to completing.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/computing.py to computing.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/constants.py to constants.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/constants_palette.py to constants_palette.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/controlling.py to controlling.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/creating.py to creating.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/diagnosing.py to diagnosing.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/editing.py to editing.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/editor.py to editor.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/experimenting.py to experimenting.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/exporting.py to exporting.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/externing.py to externing.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/feedingback.py to feedingback.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/fitting.py to fitting.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/gui.py to gui.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/headering.py to headering.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/helping.py to helping.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/importing.py to importing.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/internal.py to internal.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/invocation.py to invocation.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/keyboard.py to keyboard.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/keywords.py to keywords.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/lazyio.py to lazyio.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/locking.py to locking.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/menu.py to menu.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/monitoring.py to monitoring.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/morphing.py to morphing.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/movie.py to movie.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/moving.py to moving.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/mpeg_encode.py to mpeg_encode.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/parser.py to parser.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/parsing.py to parsing.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/povray.py to povray.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/preset.py to preset.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/pymolhttpd.py to pymolhttpd.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/querying.py to querying.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/rpc.py to rpc.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/save_shortcut.py to save_shortcut.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/selecting.py to selecting.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/selector.py to selector.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/seqalign.py to seqalign.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/setting.py to setting.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/shortcut.py to shortcut.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/shortcut_dict.py to shortcut_dict.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/shortcut_manager.py to shortcut_manager.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/util.py to util.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/vfont.py to vfont.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/viewing.py to viewing.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/wizarding.py to wizarding.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/xray.py to xray.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/xwin.py to xwin.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol2/__init__.py to __init__.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol2/cmd2.py to cmd2.cpython-311.pyc
writing byte-compilation script '/tmp/tmp6mdmz6nc.py'
/usr/bin/python3 /tmp/tmp6mdmz6nc.py
removing /tmp/tmp6mdmz6nc.py
running install_egg_info
running egg_info
creating pymol.egg-info
writing pymol.egg-info/PKG-INFO
writing dependency_links to pymol.egg-info/dependency_links.txt
writing top-level names to pymol.egg-info/top_level.txt
writing manifest file 'pymol.egg-info/SOURCES.txt'
/usr/lib/python3.11/site-packages/setuptools/command/egg_info.py:643: SetuptoolsDeprecationWarning: Custom 'build_py' does not implement 'get_data_files_without_manifest'.
Please extend command classes from setuptools instead of distutils.
  warnings.warn(
reading manifest file 'pymol.egg-info/SOURCES.txt'
adding license file 'LICENSE'
adding license file 'AUTHORS'
writing manifest file 'pymol.egg-info/SOURCES.txt'
Copying pymol.egg-info to /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol-2.5.0-py3.11.egg-info
copying LICENSE -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol
copying data -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/data
copying test -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/test
copying examples -> /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/examples
creating /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/bin
Exception ignored in: <function Pool.__del__ at 0x7f712d7bc040>
Traceback (most recent call last):
  File "/usr/lib64/python3.11/multiprocessing/pool.py", line 271, in __del__
  File "/usr/lib64/python3.11/multiprocessing/queues.py", line 377, in put
  File "/usr/lib64/python3.11/multiprocessing/connection.py", line 199, in send_bytes
  File "/usr/lib64/python3.11/multiprocessing/connection.py", line 399, in _send_bytes
AttributeError: 'NoneType' object has no attribute 'pack'
+ rm -rfv /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/bin/__pycache__
+ echo '#!/bin/sh'
+ echo 'export PYMOL_PATH=/usr/lib64/python3.11/site-packages/pymol'
+ echo 'exec /usr/bin/python3 /usr/lib64/python3.11/site-packages/pymol/__init__.py "$@"'
+ cp -a data examples test /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/
+ rm -f /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/examples/devel/link_demo.py
+ rm -f /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/examples/devel/particle01.py
+ rm -f /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/examples/devel/particle02.py
+ rm -f /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/test/inp/B03.py
+ rm -f /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/test/inp/B05.py
+ rm -f /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/test/inp/B11.py
+ rm -f /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/test/ref/T01.log
+ rm -f /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/pymol_path/examples/devel/link_demo.py
+ rm -f /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/pymol_path/examples/devel/particle01.py
+ rm -f /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/pymol_path/examples/devel/particle02.py
+ rm -f /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/pymol_path/test/inp/B03.py
+ rm -f /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/pymol_path/test/inp/B05.py
+ rm -f /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/pymol_path/test/inp/B11.py
+ rm -f /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/pymol_path/test/ref/T01.log
+ mkdir -p /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/bin
+ install -p -m 755 pymol /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/bin/
+ desktop-file-install --vendor= --dir=/builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/share/applications /builddir/build/SOURCES/pymol.desktop
+ mkdir -p /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/share/pixmaps
+ install -p -m 644 /builddir/build/SOURCES/pymol.png /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/share/pixmaps/
+ mkdir -p /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/share/metainfo
+ install -p -m 644 /builddir/build/SOURCES/pymol.appdata.xml /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/share/metainfo/
+ appstream-util validate-relax --nonet /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64//usr/share/metainfo/pymol.appdata.xml
/builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64//usr/share/metainfo/pymol.appdata.xml: OK
+ /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 2.5.0-6.fc38 --unique-debug-suffix -2.5.0-6.fc38.x86_64 --unique-debug-src-base pymol-2.5.0-6.fc38.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/pymol-open-source-2.5.0
extracting debug info from /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/pymol/_cmd.cpython-311-x86_64-linux-gnu.so
extracting debug info from /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11/site-packages/chempy/champ/_champ.cpython-311-x86_64-linux-gnu.so
original debug info size: 59008kB, size after compression: 45312kB
/usr/bin/sepdebugcrcfix: Updated 2 CRC32s, 0 CRC32s did match.
51230 blocks
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/check-rpaths
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
*** WARNING: ./usr/src/debug/pymol-2.5.0-6.fc38.x86_64/layer3/MaeExportHelpers.h is executable but has no shebang, removing executable bit
*** WARNING: ./usr/src/debug/pymol-2.5.0-6.fc38.x86_64/layer3/MaeExportHelpers.cpp is executable but has no shebang, removing executable bit
*** WARNING: ./usr/src/debug/pymol-2.5.0-6.fc38.x86_64/layer0/GraphicsUtil.h is executable but has no shebang, removing executable bit
*** WARNING: ./usr/src/debug/pymol-2.5.0-6.fc38.x86_64/layer0/GraphicsUtil.cpp is executable but has no shebang, removing executable bit
mangling shebang in /usr/bin/pymol from /bin/sh to #!/usr/bin/sh
+ /usr/lib/rpm/brp-remove-la-files
+ env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2
Bytecompiling .py files below /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib/debug/usr/lib64/python3.11 using python3.11
Bytecompiling .py files below /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/lib64/python3.11 using python3.11
+ /usr/lib/rpm/redhat/brp-python-hardlink
Processing files: pymol-2.5.0-6.fc38.x86_64
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.oEV7Bk
+ umask 022
+ cd /builddir/build/BUILD
+ cd pymol-open-source-2.5.0
+ DOCDIR=/builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/share/doc/pymol
+ export LC_ALL=C
+ LC_ALL=C
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/share/doc/pymol
+ cp -pr AUTHORS /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/share/doc/pymol
+ cp -pr DEVELOPERS /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/share/doc/pymol
+ cp -pr README.md /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/share/doc/pymol
+ cp -pr ChangeLog /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/share/doc/pymol
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.fPFmRx
+ umask 022
+ cd /builddir/build/BUILD
+ cd pymol-open-source-2.5.0
+ LICENSEDIR=/builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/share/licenses/pymol
+ export LC_ALL=C
+ LC_ALL=C
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/share/licenses/pymol
+ cp -pr LICENSE /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64/usr/share/licenses/pymol
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: PyMOL(x86-64) = 0:2.5.0-6.fc38 application() application(pymol.desktop) metainfo() metainfo(pymol.appdata.xml) pymol = 2.5.0-6.fc38 pymol(x86-64) = 2.5.0-6.fc38 python3.11dist(pymol) = 2.5 python3dist(pymol) = 2.5
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: /usr/bin/sh libGL.so.1()(64bit) libGLEW.so.2.2()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_2.7)(64bit) libfreetype.so.6()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libgomp.so.1()(64bit) libgomp.so.1(GOMP_1.0)(64bit) libgomp.so.1(GOMP_4.0)(64bit) libgomp.so.1(OMP_1.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.27)(64bit) libm.so.6(GLIBC_2.29)(64bit) libm.so.6(GLIBC_2.35)(64bit) libnetcdf.so.19()(64bit) libpng16.so.16()(64bit) libpng16.so.16(PNG16_0)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.5)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libxml2.so.2()(64bit) libxml2.so.2(LIBXML2_2.4.30)(64bit) libxml2.so.2(LIBXML2_2.6.0)(64bit) libxml2.so.2(LIBXML2_2.6.3)(64bit) python(abi) = 3.11 rtld(GNU_HASH)
Processing files: pymol-debugsource-2.5.0-6.fc38.x86_64
Provides: pymol-debugsource = 2.5.0-6.fc38 pymol-debugsource(x86-64) = 2.5.0-6.fc38
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: pymol-debuginfo-2.5.0-6.fc38.x86_64
Provides: debuginfo(build-id) = 04e92f5e2adaf8736fe5df4eedfb964268beca1b debuginfo(build-id) = 9f3b17b84bf74f6cf8815cfdc0d3683d3b26d668 pymol-debuginfo = 2.5.0-6.fc38 pymol-debuginfo(x86-64) = 2.5.0-6.fc38
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: pymol-debugsource(x86-64) = 2.5.0-6.fc38
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64
Wrote: /builddir/build/RPMS/pymol-debugsource-2.5.0-6.fc38.x86_64.rpm
Wrote: /builddir/build/RPMS/pymol-debuginfo-2.5.0-6.fc38.x86_64.rpm
Wrote: /builddir/build/RPMS/pymol-2.5.0-6.fc38.x86_64.rpm
Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.rIJ3gt
+ umask 022
+ cd /builddir/build/BUILD
+ cd pymol-open-source-2.5.0
+ /usr/bin/rm -rf /builddir/build/BUILDROOT/pymol-2.5.0-6.fc38.x86_64
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.eDzJkD
+ umask 022
+ cd /builddir/build/BUILD
+ rm -rf pymol-open-source-2.5.0 pymol-open-source-2.5.0.gemspec
+ RPM_EC=0
++ jobs -p
+ exit 0
Finish: rpmbuild pymol-2.5.0-6.fc38.src.rpm
Finish: build phase for pymol-2.5.0-6.fc38.src.rpm
INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-x86_64-1674292270.246865/root/var/log/dnf.rpm.log
/var/lib/mock/fedora-rawhide-x86_64-1674292270.246865/root/var/log/dnf.librepo.log
/var/lib/mock/fedora-rawhide-x86_64-1674292270.246865/root/var/log/dnf.log
INFO: Done(/var/lib/copr-rpmbuild/results/pymol-2.5.0-6.fc38.src.rpm) Config(child) 5 minutes 57 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
Finish: run
Running RPMResults tool