Mock Version: 3.5
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/python-pyphi.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1674316800.770939/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x7fcfe1917ad0>timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.vryint3m:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=True)
Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.vryint3m:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']
Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '0e6f1cec72be4edba53cae520b9a0613', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1674316800.770939/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.vryint3m:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;<mock-chroot>\\007"', '--setenv=PS1=<mock-chroot> \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/python-pyphi.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1674172800
Wrote: /builddir/build/SRPMS/python-pyphi-1.2.1-6.fc38.src.rpm
Child return code was: 0
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -br --target x86_64 --nodeps /builddir/build/SPECS/python-pyphi.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1674316800.770939/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x7fcfe1917ad0>timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.vryint3m:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueraiseExc=FalseprintOutput=True)
Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.vryint3m:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']
Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '7601455b796840559aef71f326a811eb', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1674316800.770939/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.vryint3m:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;<mock-chroot>\\007"', '--setenv=PS1=<mock-chroot> \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -br --target x86_64 --nodeps /builddir/build/SPECS/python-pyphi.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1674172800
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.weHB0w
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf pyphi-1.2.1
+ /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/pyphi-1.2.1.tar.gz
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd pyphi-1.2.1
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ /usr/bin/git init -q
+ /usr/bin/git config user.name rpm-build
+ /usr/bin/git config user.email '<rpm-build>'
+ /usr/bin/git config gc.auto 0
+ /usr/bin/git add --force .
+ /usr/bin/git commit -q --allow-empty -a --author 'rpm-build <rpm-build>' -m 'python-pyphi-1.2.1 base'
+ /usr/bin/git checkout --track -b rpm-build
Switched to a new branch 'rpm-build'
branch 'rpm-build' set up to track 'master'.
+ /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0001-fix-py3.10-correct-collections-import.patch
+ /usr/bin/git apply --index --reject -
Checking patch pyphi/db.py...
Checking patch pyphi/labels.py...
Checking patch pyphi/models/actual_causation.py...
Checking patch pyphi/models/cmp.py...
Checking patch pyphi/models/cuts.py...
Checking patch pyphi/models/subsystem.py...
Checking patch pyphi/registry.py...
Applied patch pyphi/db.py cleanly.
Applied patch pyphi/labels.py cleanly.
Applied patch pyphi/models/actual_causation.py cleanly.
Applied patch pyphi/models/cmp.py cleanly.
Applied patch pyphi/models/cuts.py cleanly.
Applied patch pyphi/models/subsystem.py cleanly.
Applied patch pyphi/registry.py cleanly.
+ /usr/bin/git commit -q -m 0001-fix-py3.10-correct-collections-import.patch --author 'rpm-build <rpm-build>'
+ sed -i s/sphinxcontrib.napoleon/sphinx.ext.napoleon/ docs/conf.py
+ find pyphi -name '*.py' -exec sed -i '/#!\/usr\/bin\/env python3/ d' '{}' ';'
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.eajaFy
+ umask 022
+ cd /builddir/build/BUILD
+ cd pyphi-1.2.1
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer'
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer'
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules'
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ echo pyproject-rpm-macros
+ echo python3-devel
+ echo 'python3dist(pip) >= 19'
+ echo 'python3dist(packaging)'
+ '[' -f pyproject.toml ']'
+ '[' -f setup.py ']'
+ echo 'python3dist(setuptools) >= 40.8'
+ echo 'python3dist(wheel)'
+ rm -rfv '*.dist-info/'
+ '[' -f /usr/bin/python3 ']'
+ mkdir -p /builddir/build/BUILD/pyphi-1.2.1/.pyproject-builddir
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer'
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 '
+ TMPDIR=/builddir/build/BUILD/pyphi-1.2.1/.pyproject-builddir
+ RPM_TOXENV=py311
+ HOSTNAME=rpmbuild
+ /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/pyphi-1.2.1/pyproject-wheeldir -r
Handling setuptools >= 40.8 from default build backend
Requirement satisfied: setuptools >= 40.8
(installed: setuptools 65.5.1)
Handling wheel from default build backend
Requirement not satisfied: wheel
Exiting dependency generation pass: build backend
+ RPM_EC=0
++ jobs -p
+ exit 0
Wrote: /builddir/build/SRPMS/python-pyphi-1.2.1-6.fc38.buildreqs.nosrc.rpm
Child return code was: 11
Dynamic buildrequires detected
Going to install missing buildrequires. See root.log for details.
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -br --target x86_64 --nodeps /builddir/build/SPECS/python-pyphi.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1674316800.770939/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x7fcfe1917ad0>timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.vryint3m:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueraiseExc=FalseprintOutput=True)
Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.vryint3m:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']
Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'cc94b931871b44799f617b03ec93fd5b', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1674316800.770939/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.vryint3m:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;<mock-chroot>\\007"', '--setenv=PS1=<mock-chroot> \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -br --target x86_64 --nodeps /builddir/build/SPECS/python-pyphi.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1674172800
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.HEotdM
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf pyphi-1.2.1
+ /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/pyphi-1.2.1.tar.gz
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd pyphi-1.2.1
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ /usr/bin/git init -q
+ /usr/bin/git config user.name rpm-build
+ /usr/bin/git config user.email '<rpm-build>'
+ /usr/bin/git config gc.auto 0
+ /usr/bin/git add --force .
+ /usr/bin/git commit -q --allow-empty -a --author 'rpm-build <rpm-build>' -m 'python-pyphi-1.2.1 base'
+ /usr/bin/git checkout --track -b rpm-build
Switched to a new branch 'rpm-build'
branch 'rpm-build' set up to track 'master'.
+ /usr/bin/git apply --index --reject -
+ /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0001-fix-py3.10-correct-collections-import.patch
Checking patch pyphi/db.py...
Checking patch pyphi/labels.py...
Checking patch pyphi/models/actual_causation.py...
Checking patch pyphi/models/cmp.py...
Checking patch pyphi/models/cuts.py...
Checking patch pyphi/models/subsystem.py...
Checking patch pyphi/registry.py...
Applied patch pyphi/db.py cleanly.
Applied patch pyphi/labels.py cleanly.
Applied patch pyphi/models/actual_causation.py cleanly.
Applied patch pyphi/models/cmp.py cleanly.
Applied patch pyphi/models/cuts.py cleanly.
Applied patch pyphi/models/subsystem.py cleanly.
Applied patch pyphi/registry.py cleanly.
+ /usr/bin/git commit -q -m 0001-fix-py3.10-correct-collections-import.patch --author 'rpm-build <rpm-build>'
+ sed -i s/sphinxcontrib.napoleon/sphinx.ext.napoleon/ docs/conf.py
+ find pyphi -name '*.py' -exec sed -i '/#!\/usr\/bin\/env python3/ d' '{}' ';'
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.FIWvAa
+ umask 022
+ cd /builddir/build/BUILD
+ cd pyphi-1.2.1
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer'
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer'
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules'
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ echo pyproject-rpm-macros
+ echo python3-devel
+ echo 'python3dist(pip) >= 19'
+ echo 'python3dist(packaging)'
+ '[' -f pyproject.toml ']'
+ '[' -f setup.py ']'
+ echo 'python3dist(setuptools) >= 40.8'
+ echo 'python3dist(wheel)'
+ rm -rfv '*.dist-info/'
+ '[' -f /usr/bin/python3 ']'
+ mkdir -p /builddir/build/BUILD/pyphi-1.2.1/.pyproject-builddir
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer'
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 '
+ TMPDIR=/builddir/build/BUILD/pyphi-1.2.1/.pyproject-builddir
+ RPM_TOXENV=py311
+ HOSTNAME=rpmbuild
+ /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/pyphi-1.2.1/pyproject-wheeldir -r
Handling setuptools >= 40.8 from default build backend
Requirement satisfied: setuptools >= 40.8
(installed: setuptools 65.5.1)
Handling wheel from default build backend
Requirement satisfied: wheel
(installed: wheel 0.38.4)
/usr/lib/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'upload-dir' will not be supported in future versions. Please use the underscore name 'upload_dir' instead
warnings.warn(
HOOK STDOUT: running egg_info
HOOK STDOUT: creating pyphi.egg-info
HOOK STDOUT: writing pyphi.egg-info/PKG-INFO
HOOK STDOUT: writing dependency_links to pyphi.egg-info/dependency_links.txt
HOOK STDOUT: writing requirements to pyphi.egg-info/requires.txt
HOOK STDOUT: writing top-level names to pyphi.egg-info/top_level.txt
HOOK STDOUT: writing manifest file 'pyphi.egg-info/SOURCES.txt'
HOOK STDOUT: reading manifest file 'pyphi.egg-info/SOURCES.txt'
HOOK STDOUT: reading manifest template 'MANIFEST.in'
HOOK STDOUT: adding license file 'LICENSE.md'
HOOK STDOUT: writing manifest file 'pyphi.egg-info/SOURCES.txt'
Handling wheel from get_requires_for_build_wheel
Requirement satisfied: wheel
(installed: wheel 0.38.4)
HOOK STDOUT: running dist_info
HOOK STDOUT: writing pyphi.egg-info/PKG-INFO
HOOK STDOUT: writing dependency_links to pyphi.egg-info/dependency_links.txt
HOOK STDOUT: writing requirements to pyphi.egg-info/requires.txt
HOOK STDOUT: writing top-level names to pyphi.egg-info/top_level.txt
HOOK STDOUT: reading manifest file 'pyphi.egg-info/SOURCES.txt'
HOOK STDOUT: reading manifest template 'MANIFEST.in'
HOOK STDOUT: adding license file 'LICENSE.md'
HOOK STDOUT: writing manifest file 'pyphi.egg-info/SOURCES.txt'
HOOK STDOUT: creating '/builddir/build/BUILD/pyphi-1.2.1/pyphi-1.2.1.dist-info'
Handling decorator (>=4.0.0) from hook generated metadata: Requires-Dist
Requirement not satisfied: decorator (>=4.0.0)
Handling joblib (>=0.8.0) from hook generated metadata: Requires-Dist
Requirement not satisfied: joblib (>=0.8.0)
Handling numpy (>=1.11.0) from hook generated metadata: Requires-Dist
Requirement not satisfied: numpy (>=1.11.0)
Handling psutil (>=2.1.1) from hook generated metadata: Requires-Dist
Requirement not satisfied: psutil (>=2.1.1)
Handling pyemd (>=0.3.0) from hook generated metadata: Requires-Dist
Requirement not satisfied: pyemd (>=0.3.0)
Handling pymongo (>=2.7.1) from hook generated metadata: Requires-Dist
Requirement not satisfied: pymongo (>=2.7.1)
Handling pyyaml (>=3.13) from hook generated metadata: Requires-Dist
Requirement not satisfied: pyyaml (>=3.13)
Handling redis (>=2.10.5) from hook generated metadata: Requires-Dist
Requirement not satisfied: redis (>=2.10.5)
Handling scipy (>=0.13.3) from hook generated metadata: Requires-Dist
Requirement not satisfied: scipy (>=0.13.3)
Handling tblib (>=1.3.2) from hook generated metadata: Requires-Dist
Requirement not satisfied: tblib (>=1.3.2)
Handling tqdm (>=4.20.0) from hook generated metadata: Requires-Dist
Requirement not satisfied: tqdm (>=4.20.0)
+ RPM_EC=0
++ jobs -p
+ exit 0
Wrote: /builddir/build/SRPMS/python-pyphi-1.2.1-6.fc38.buildreqs.nosrc.rpm
Child return code was: 11
Dynamic buildrequires detected
Going to install missing buildrequires. See root.log for details.
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -br --target x86_64 --nodeps /builddir/build/SPECS/python-pyphi.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1674316800.770939/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x7fcfe1917ad0>timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.vryint3m:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueraiseExc=FalseprintOutput=True)
Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.vryint3m:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']
Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'cba6db1277a04e93a4be0ebeaaa5b5cd', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1674316800.770939/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.vryint3m:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;<mock-chroot>\\007"', '--setenv=PS1=<mock-chroot> \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -br --target x86_64 --nodeps /builddir/build/SPECS/python-pyphi.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1674172800
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.ayMUHV
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf pyphi-1.2.1
+ /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/pyphi-1.2.1.tar.gz
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd pyphi-1.2.1
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ /usr/bin/git init -q
+ /usr/bin/git config user.name rpm-build
+ /usr/bin/git config user.email '<rpm-build>'
+ /usr/bin/git config gc.auto 0
+ /usr/bin/git add --force .
+ /usr/bin/git commit -q --allow-empty -a --author 'rpm-build <rpm-build>' -m 'python-pyphi-1.2.1 base'
+ /usr/bin/git checkout --track -b rpm-build
Switched to a new branch 'rpm-build'
branch 'rpm-build' set up to track 'master'.
+ /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0001-fix-py3.10-correct-collections-import.patch
+ /usr/bin/git apply --index --reject -
Checking patch pyphi/db.py...
Checking patch pyphi/labels.py...
Checking patch pyphi/models/actual_causation.py...
Checking patch pyphi/models/cmp.py...
Checking patch pyphi/models/cuts.py...
Checking patch pyphi/models/subsystem.py...
Checking patch pyphi/registry.py...
Applied patch pyphi/db.py cleanly.
Applied patch pyphi/labels.py cleanly.
Applied patch pyphi/models/actual_causation.py cleanly.
Applied patch pyphi/models/cmp.py cleanly.
Applied patch pyphi/models/cuts.py cleanly.
Applied patch pyphi/models/subsystem.py cleanly.
Applied patch pyphi/registry.py cleanly.
+ /usr/bin/git commit -q -m 0001-fix-py3.10-correct-collections-import.patch --author 'rpm-build <rpm-build>'
+ sed -i s/sphinxcontrib.napoleon/sphinx.ext.napoleon/ docs/conf.py
+ find pyphi -name '*.py' -exec sed -i '/#!\/usr\/bin\/env python3/ d' '{}' ';'
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.kbkEVw
+ umask 022
+ cd /builddir/build/BUILD
+ cd pyphi-1.2.1
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer'
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer'
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules'
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ echo pyproject-rpm-macros
+ echo python3-devel
+ echo 'python3dist(pip) >= 19'
+ echo 'python3dist(packaging)'
+ '[' -f pyproject.toml ']'
+ '[' -f setup.py ']'
+ echo 'python3dist(setuptools) >= 40.8'
+ echo 'python3dist(wheel)'
+ rm -rfv '*.dist-info/'
+ '[' -f /usr/bin/python3 ']'
+ mkdir -p /builddir/build/BUILD/pyphi-1.2.1/.pyproject-builddir
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer'
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 '
+ TMPDIR=/builddir/build/BUILD/pyphi-1.2.1/.pyproject-builddir
+ RPM_TOXENV=py311
+ HOSTNAME=rpmbuild
+ /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/pyphi-1.2.1/pyproject-wheeldir -r
Handling setuptools >= 40.8 from default build backend
Requirement satisfied: setuptools >= 40.8
(installed: setuptools 65.5.1)
Handling wheel from default build backend
Requirement satisfied: wheel
(installed: wheel 0.38.4)
/usr/lib/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'upload-dir' will not be supported in future versions. Please use the underscore name 'upload_dir' instead
warnings.warn(
HOOK STDOUT: running egg_info
HOOK STDOUT: creating pyphi.egg-info
HOOK STDOUT: writing pyphi.egg-info/PKG-INFO
HOOK STDOUT: writing dependency_links to pyphi.egg-info/dependency_links.txt
HOOK STDOUT: writing requirements to pyphi.egg-info/requires.txt
HOOK STDOUT: writing top-level names to pyphi.egg-info/top_level.txt
HOOK STDOUT: writing manifest file 'pyphi.egg-info/SOURCES.txt'
HOOK STDOUT: reading manifest file 'pyphi.egg-info/SOURCES.txt'
HOOK STDOUT: reading manifest template 'MANIFEST.in'
HOOK STDOUT: adding license file 'LICENSE.md'
HOOK STDOUT: writing manifest file 'pyphi.egg-info/SOURCES.txt'
Handling wheel from get_requires_for_build_wheel
Requirement satisfied: wheel
(installed: wheel 0.38.4)
HOOK STDOUT: running dist_info
HOOK STDOUT: writing pyphi.egg-info/PKG-INFO
HOOK STDOUT: writing dependency_links to pyphi.egg-info/dependency_links.txt
HOOK STDOUT: writing requirements to pyphi.egg-info/requires.txt
HOOK STDOUT: writing top-level names to pyphi.egg-info/top_level.txt
HOOK STDOUT: reading manifest file 'pyphi.egg-info/SOURCES.txt'
HOOK STDOUT: reading manifest template 'MANIFEST.in'
HOOK STDOUT: adding license file 'LICENSE.md'
HOOK STDOUT: writing manifest file 'pyphi.egg-info/SOURCES.txt'
HOOK STDOUT: creating '/builddir/build/BUILD/pyphi-1.2.1/pyphi-1.2.1.dist-info'
Handling decorator (>=4.0.0) from hook generated metadata: Requires-Dist
Requirement satisfied: decorator (>=4.0.0)
(installed: decorator 5.1.1)
Handling joblib (>=0.8.0) from hook generated metadata: Requires-Dist
Requirement satisfied: joblib (>=0.8.0)
(installed: joblib 1.2.0)
Handling numpy (>=1.11.0) from hook generated metadata: Requires-Dist
Requirement satisfied: numpy (>=1.11.0)
(installed: numpy 1.23.5)
Handling psutil (>=2.1.1) from hook generated metadata: Requires-Dist
Requirement satisfied: psutil (>=2.1.1)
(installed: psutil 5.9.2)
Handling pyemd (>=0.3.0) from hook generated metadata: Requires-Dist
Requirement satisfied: pyemd (>=0.3.0)
(installed: pyemd 0.5.1)
Handling pymongo (>=2.7.1) from hook generated metadata: Requires-Dist
Requirement satisfied: pymongo (>=2.7.1)
(installed: pymongo 4.2.0)
Handling pyyaml (>=3.13) from hook generated metadata: Requires-Dist
Requirement satisfied: pyyaml (>=3.13)
(installed: pyyaml 6.0)
Handling redis (>=2.10.5) from hook generated metadata: Requires-Dist
Requirement satisfied: redis (>=2.10.5)
(installed: redis 4.3.4)
Handling scipy (>=0.13.3) from hook generated metadata: Requires-Dist
Requirement satisfied: scipy (>=0.13.3)
(installed: scipy 1.8.1)
Handling tblib (>=1.3.2) from hook generated metadata: Requires-Dist
Requirement satisfied: tblib (>=1.3.2)
(installed: tblib 1.7.0)
Handling tqdm (>=4.20.0) from hook generated metadata: Requires-Dist
Requirement satisfied: tqdm (>=4.20.0)
(installed: tqdm 4.64.1)
+ RPM_EC=0
++ jobs -p
+ exit 0
Wrote: /builddir/build/SRPMS/python-pyphi-1.2.1-6.fc38.buildreqs.nosrc.rpm
Child return code was: 11
Dynamic buildrequires detected
Going to install missing buildrequires. See root.log for details.
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -ba --noprep --target x86_64 --nodeps /builddir/build/SPECS/python-pyphi.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1674316800.770939/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x7fcfe1917ad0>timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.vryint3m:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=True)
Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.vryint3m:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']
Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '07785d9d4e684941802018617a1865bd', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1674316800.770939/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.vryint3m:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;<mock-chroot>\\007"', '--setenv=PS1=<mock-chroot> \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -ba --noprep --target x86_64 --nodeps /builddir/build/SPECS/python-pyphi.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1674172800
Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.8dN7zZ
+ umask 022
+ cd /builddir/build/BUILD
+ cd pyphi-1.2.1
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer'
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer'
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules'
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ echo pyproject-rpm-macros
+ echo python3-devel
+ echo 'python3dist(pip) >= 19'
+ echo 'python3dist(packaging)'
+ '[' -f pyproject.toml ']'
+ '[' -f setup.py ']'
+ echo 'python3dist(setuptools) >= 40.8'
+ echo 'python3dist(wheel)'
+ rm -rfv pyphi-1.2.1.dist-info/
removed 'pyphi-1.2.1.dist-info/LICENSE.md'
removed 'pyphi-1.2.1.dist-info/METADATA'
removed 'pyphi-1.2.1.dist-info/top_level.txt'
removed directory 'pyphi-1.2.1.dist-info/'
+ '[' -f /usr/bin/python3 ']'
+ mkdir -p /builddir/build/BUILD/pyphi-1.2.1/.pyproject-builddir
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer'
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 '
+ TMPDIR=/builddir/build/BUILD/pyphi-1.2.1/.pyproject-builddir
+ RPM_TOXENV=py311
+ HOSTNAME=rpmbuild
+ /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/pyphi-1.2.1/pyproject-wheeldir -r
Handling setuptools >= 40.8 from default build backend
Requirement satisfied: setuptools >= 40.8
(installed: setuptools 65.5.1)
Handling wheel from default build backend
Requirement satisfied: wheel
(installed: wheel 0.38.4)
/usr/lib/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'upload-dir' will not be supported in future versions. Please use the underscore name 'upload_dir' instead
warnings.warn(
HOOK STDOUT: running egg_info
HOOK STDOUT: writing pyphi.egg-info/PKG-INFO
HOOK STDOUT: writing dependency_links to pyphi.egg-info/dependency_links.txt
HOOK STDOUT: writing requirements to pyphi.egg-info/requires.txt
HOOK STDOUT: writing top-level names to pyphi.egg-info/top_level.txt
HOOK STDOUT: reading manifest file 'pyphi.egg-info/SOURCES.txt'
HOOK STDOUT: reading manifest template 'MANIFEST.in'
HOOK STDOUT: adding license file 'LICENSE.md'
HOOK STDOUT: writing manifest file 'pyphi.egg-info/SOURCES.txt'
Handling wheel from get_requires_for_build_wheel
Requirement satisfied: wheel
(installed: wheel 0.38.4)
HOOK STDOUT: running dist_info
HOOK STDOUT: writing pyphi.egg-info/PKG-INFO
HOOK STDOUT: writing dependency_links to pyphi.egg-info/dependency_links.txt
HOOK STDOUT: writing requirements to pyphi.egg-info/requires.txt
HOOK STDOUT: writing top-level names to pyphi.egg-info/top_level.txt
HOOK STDOUT: reading manifest file 'pyphi.egg-info/SOURCES.txt'
HOOK STDOUT: reading manifest template 'MANIFEST.in'
HOOK STDOUT: adding license file 'LICENSE.md'
HOOK STDOUT: writing manifest file 'pyphi.egg-info/SOURCES.txt'
HOOK STDOUT: creating '/builddir/build/BUILD/pyphi-1.2.1/pyphi-1.2.1.dist-info'
Handling decorator (>=4.0.0) from hook generated metadata: Requires-Dist
Requirement satisfied: decorator (>=4.0.0)
(installed: decorator 5.1.1)
Handling joblib (>=0.8.0) from hook generated metadata: Requires-Dist
Requirement satisfied: joblib (>=0.8.0)
(installed: joblib 1.2.0)
Handling numpy (>=1.11.0) from hook generated metadata: Requires-Dist
Requirement satisfied: numpy (>=1.11.0)
(installed: numpy 1.23.5)
Handling psutil (>=2.1.1) from hook generated metadata: Requires-Dist
Requirement satisfied: psutil (>=2.1.1)
(installed: psutil 5.9.2)
Handling pyemd (>=0.3.0) from hook generated metadata: Requires-Dist
Requirement satisfied: pyemd (>=0.3.0)
(installed: pyemd 0.5.1)
Handling pymongo (>=2.7.1) from hook generated metadata: Requires-Dist
Requirement satisfied: pymongo (>=2.7.1)
(installed: pymongo 4.2.0)
Handling pyyaml (>=3.13) from hook generated metadata: Requires-Dist
Requirement satisfied: pyyaml (>=3.13)
(installed: pyyaml 6.0)
Handling redis (>=2.10.5) from hook generated metadata: Requires-Dist
Requirement satisfied: redis (>=2.10.5)
(installed: redis 4.3.4)
Handling scipy (>=0.13.3) from hook generated metadata: Requires-Dist
Requirement satisfied: scipy (>=0.13.3)
(installed: scipy 1.8.1)
Handling tblib (>=1.3.2) from hook generated metadata: Requires-Dist
Requirement satisfied: tblib (>=1.3.2)
(installed: tblib 1.7.0)
Handling tqdm (>=4.20.0) from hook generated metadata: Requires-Dist
Requirement satisfied: tqdm (>=4.20.0)
(installed: tqdm 4.64.1)
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.vtbGLa
+ umask 022
+ cd /builddir/build/BUILD
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer'
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer'
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules'
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes'
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd pyphi-1.2.1
+ mkdir -p /builddir/build/BUILD/pyphi-1.2.1/.pyproject-builddir
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer'
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes'
+ TMPDIR=/builddir/build/BUILD/pyphi-1.2.1/.pyproject-builddir
+ /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_wheel.py /builddir/build/BUILD/pyphi-1.2.1/pyproject-wheeldir
Processing /builddir/build/BUILD/pyphi-1.2.1
Preparing metadata (pyproject.toml): started
Running command Preparing metadata (pyproject.toml)
/usr/lib/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'upload-dir' will not be supported in future versions. Please use the underscore name 'upload_dir' instead
warnings.warn(
running dist_info
creating /builddir/build/BUILD/pyphi-1.2.1/.pyproject-builddir/pip-modern-metadata-o7i7i4y4/pyphi.egg-info
writing /builddir/build/BUILD/pyphi-1.2.1/.pyproject-builddir/pip-modern-metadata-o7i7i4y4/pyphi.egg-info/PKG-INFO
writing dependency_links to /builddir/build/BUILD/pyphi-1.2.1/.pyproject-builddir/pip-modern-metadata-o7i7i4y4/pyphi.egg-info/dependency_links.txt
writing requirements to /builddir/build/BUILD/pyphi-1.2.1/.pyproject-builddir/pip-modern-metadata-o7i7i4y4/pyphi.egg-info/requires.txt
writing top-level names to /builddir/build/BUILD/pyphi-1.2.1/.pyproject-builddir/pip-modern-metadata-o7i7i4y4/pyphi.egg-info/top_level.txt
writing manifest file '/builddir/build/BUILD/pyphi-1.2.1/.pyproject-builddir/pip-modern-metadata-o7i7i4y4/pyphi.egg-info/SOURCES.txt'
reading manifest file '/builddir/build/BUILD/pyphi-1.2.1/.pyproject-builddir/pip-modern-metadata-o7i7i4y4/pyphi.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
adding license file 'LICENSE.md'
writing manifest file '/builddir/build/BUILD/pyphi-1.2.1/.pyproject-builddir/pip-modern-metadata-o7i7i4y4/pyphi.egg-info/SOURCES.txt'
creating '/builddir/build/BUILD/pyphi-1.2.1/.pyproject-builddir/pip-modern-metadata-o7i7i4y4/pyphi-1.2.1.dist-info'
Preparing metadata (pyproject.toml): finished with status 'done'
Building wheels for collected packages: pyphi
Building wheel for pyphi (pyproject.toml): started
Running command Building wheel for pyphi (pyproject.toml)
/usr/lib/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'upload-dir' will not be supported in future versions. Please use the underscore name 'upload_dir' instead
warnings.warn(
running bdist_wheel
running build
running build_py
creating build
creating build/lib
creating build/lib/pyphi
copying pyphi/__about__.py -> build/lib/pyphi
copying pyphi/__init__.py -> build/lib/pyphi
copying pyphi/actual.py -> build/lib/pyphi
copying pyphi/cache.py -> build/lib/pyphi
copying pyphi/conf.py -> build/lib/pyphi
copying pyphi/connectivity.py -> build/lib/pyphi
copying pyphi/constants.py -> build/lib/pyphi
copying pyphi/convert.py -> build/lib/pyphi
copying pyphi/direction.py -> build/lib/pyphi
copying pyphi/distance.py -> build/lib/pyphi
copying pyphi/distribution.py -> build/lib/pyphi
copying pyphi/examples.py -> build/lib/pyphi
copying pyphi/exceptions.py -> build/lib/pyphi
copying pyphi/jsonify.py -> build/lib/pyphi
copying pyphi/log.py -> build/lib/pyphi
copying pyphi/macro.py -> build/lib/pyphi
copying pyphi/memory.py -> build/lib/pyphi
copying pyphi/network.py -> build/lib/pyphi
copying pyphi/node.py -> build/lib/pyphi
copying pyphi/partition.py -> build/lib/pyphi
copying pyphi/subsystem.py -> build/lib/pyphi
copying pyphi/timescale.py -> build/lib/pyphi
copying pyphi/tpm.py -> build/lib/pyphi
copying pyphi/utils.py -> build/lib/pyphi
copying pyphi/validate.py -> build/lib/pyphi
copying pyphi/db.py -> build/lib/pyphi
copying pyphi/labels.py -> build/lib/pyphi
copying pyphi/registry.py -> build/lib/pyphi
creating build/lib/pyphi/models
copying pyphi/models/__init__.py -> build/lib/pyphi/models
copying pyphi/models/fmt.py -> build/lib/pyphi/models
copying pyphi/models/mechanism.py -> build/lib/pyphi/models
copying pyphi/models/actual_causation.py -> build/lib/pyphi/models
copying pyphi/models/cmp.py -> build/lib/pyphi/models
copying pyphi/models/cuts.py -> build/lib/pyphi/models
copying pyphi/models/subsystem.py -> build/lib/pyphi/models
creating build/lib/pyphi/compute
copying pyphi/compute/__init__.py -> build/lib/pyphi/compute
copying pyphi/compute/distance.py -> build/lib/pyphi/compute
copying pyphi/compute/network.py -> build/lib/pyphi/compute
copying pyphi/compute/parallel.py -> build/lib/pyphi/compute
copying pyphi/compute/subsystem.py -> build/lib/pyphi/compute
running egg_info
writing pyphi.egg-info/PKG-INFO
writing dependency_links to pyphi.egg-info/dependency_links.txt
writing requirements to pyphi.egg-info/requires.txt
writing top-level names to pyphi.egg-info/top_level.txt
reading manifest file 'pyphi.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
adding license file 'LICENSE.md'
writing manifest file 'pyphi.egg-info/SOURCES.txt'
/usr/lib/python3.11/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyphi.data.hamming_matrices' as data is deprecated, please list it in `packages`.
!!
############################
# Package would be ignored #
############################
Python recognizes 'pyphi.data.hamming_matrices' as an importable package,
but it is not listed in the `packages` configuration of setuptools.
'pyphi.data.hamming_matrices' has been automatically added to the distribution only
because it may contain data files, but this behavior is likely to change
in future versions of setuptools (and therefore is considered deprecated).
Please make sure that 'pyphi.data.hamming_matrices' is included as a package by using
the `packages` configuration field or the proper discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
You can read more about "package discovery" and "data files" on setuptools
documentation page.
!!
check.warn(importable)
/usr/lib/python3.11/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyphi.data.partition_lists' as data is deprecated, please list it in `packages`.
!!
############################
# Package would be ignored #
############################
Python recognizes 'pyphi.data.partition_lists' as an importable package,
but it is not listed in the `packages` configuration of setuptools.
'pyphi.data.partition_lists' has been automatically added to the distribution only
because it may contain data files, but this behavior is likely to change
in future versions of setuptools (and therefore is considered deprecated).
Please make sure that 'pyphi.data.partition_lists' is included as a package by using
the `packages` configuration field or the proper discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
You can read more about "package discovery" and "data files" on setuptools
documentation page.
!!
check.warn(importable)
creating build/lib/pyphi/data
creating build/lib/pyphi/data/hamming_matrices
copying pyphi/data/hamming_matrices/0.npy -> build/lib/pyphi/data/hamming_matrices
copying pyphi/data/hamming_matrices/1.npy -> build/lib/pyphi/data/hamming_matrices
copying pyphi/data/hamming_matrices/2.npy -> build/lib/pyphi/data/hamming_matrices
copying pyphi/data/hamming_matrices/3.npy -> build/lib/pyphi/data/hamming_matrices
copying pyphi/data/hamming_matrices/4.npy -> build/lib/pyphi/data/hamming_matrices
copying pyphi/data/hamming_matrices/5.npy -> build/lib/pyphi/data/hamming_matrices
copying pyphi/data/hamming_matrices/6.npy -> build/lib/pyphi/data/hamming_matrices
copying pyphi/data/hamming_matrices/7.npy -> build/lib/pyphi/data/hamming_matrices
copying pyphi/data/hamming_matrices/8.npy -> build/lib/pyphi/data/hamming_matrices
copying pyphi/data/hamming_matrices/9.npy -> build/lib/pyphi/data/hamming_matrices
creating build/lib/pyphi/data/partition_lists
copying pyphi/data/partition_lists/0.npy -> build/lib/pyphi/data/partition_lists
copying pyphi/data/partition_lists/1.npy -> build/lib/pyphi/data/partition_lists
copying pyphi/data/partition_lists/2.npy -> build/lib/pyphi/data/partition_lists
copying pyphi/data/partition_lists/3.npy -> build/lib/pyphi/data/partition_lists
copying pyphi/data/partition_lists/4.npy -> build/lib/pyphi/data/partition_lists
copying pyphi/data/partition_lists/5.npy -> build/lib/pyphi/data/partition_lists
copying pyphi/data/partition_lists/6.npy -> build/lib/pyphi/data/partition_lists
copying pyphi/data/partition_lists/7.npy -> build/lib/pyphi/data/partition_lists
copying pyphi/data/partition_lists/8.npy -> build/lib/pyphi/data/partition_lists
copying pyphi/data/partition_lists/9.npy -> build/lib/pyphi/data/partition_lists
installing to build/bdist.linux-x86_64/wheel
running install
running install_lib
creating build/bdist.linux-x86_64
creating build/bdist.linux-x86_64/wheel
creating build/bdist.linux-x86_64/wheel/pyphi
creating build/bdist.linux-x86_64/wheel/pyphi/data
creating build/bdist.linux-x86_64/wheel/pyphi/data/partition_lists
copying build/lib/pyphi/data/partition_lists/9.npy -> build/bdist.linux-x86_64/wheel/pyphi/data/partition_lists
copying build/lib/pyphi/data/partition_lists/8.npy -> build/bdist.linux-x86_64/wheel/pyphi/data/partition_lists
copying build/lib/pyphi/data/partition_lists/7.npy -> build/bdist.linux-x86_64/wheel/pyphi/data/partition_lists
copying build/lib/pyphi/data/partition_lists/6.npy -> build/bdist.linux-x86_64/wheel/pyphi/data/partition_lists
copying build/lib/pyphi/data/partition_lists/5.npy -> build/bdist.linux-x86_64/wheel/pyphi/data/partition_lists
copying build/lib/pyphi/data/partition_lists/4.npy -> build/bdist.linux-x86_64/wheel/pyphi/data/partition_lists
copying build/lib/pyphi/data/partition_lists/3.npy -> build/bdist.linux-x86_64/wheel/pyphi/data/partition_lists
copying build/lib/pyphi/data/partition_lists/2.npy -> build/bdist.linux-x86_64/wheel/pyphi/data/partition_lists
copying build/lib/pyphi/data/partition_lists/1.npy -> build/bdist.linux-x86_64/wheel/pyphi/data/partition_lists
copying build/lib/pyphi/data/partition_lists/0.npy -> build/bdist.linux-x86_64/wheel/pyphi/data/partition_lists
creating build/bdist.linux-x86_64/wheel/pyphi/data/hamming_matrices
copying build/lib/pyphi/data/hamming_matrices/9.npy -> build/bdist.linux-x86_64/wheel/pyphi/data/hamming_matrices
copying build/lib/pyphi/data/hamming_matrices/8.npy -> build/bdist.linux-x86_64/wheel/pyphi/data/hamming_matrices
copying build/lib/pyphi/data/hamming_matrices/7.npy -> build/bdist.linux-x86_64/wheel/pyphi/data/hamming_matrices
copying build/lib/pyphi/data/hamming_matrices/6.npy -> build/bdist.linux-x86_64/wheel/pyphi/data/hamming_matrices
copying build/lib/pyphi/data/hamming_matrices/5.npy -> build/bdist.linux-x86_64/wheel/pyphi/data/hamming_matrices
copying build/lib/pyphi/data/hamming_matrices/4.npy -> build/bdist.linux-x86_64/wheel/pyphi/data/hamming_matrices
copying build/lib/pyphi/data/hamming_matrices/3.npy -> build/bdist.linux-x86_64/wheel/pyphi/data/hamming_matrices
copying build/lib/pyphi/data/hamming_matrices/2.npy -> build/bdist.linux-x86_64/wheel/pyphi/data/hamming_matrices
copying build/lib/pyphi/data/hamming_matrices/1.npy -> build/bdist.linux-x86_64/wheel/pyphi/data/hamming_matrices
copying build/lib/pyphi/data/hamming_matrices/0.npy -> build/bdist.linux-x86_64/wheel/pyphi/data/hamming_matrices
creating build/bdist.linux-x86_64/wheel/pyphi/compute
copying build/lib/pyphi/compute/subsystem.py -> build/bdist.linux-x86_64/wheel/pyphi/compute
copying build/lib/pyphi/compute/parallel.py -> build/bdist.linux-x86_64/wheel/pyphi/compute
copying build/lib/pyphi/compute/network.py -> build/bdist.linux-x86_64/wheel/pyphi/compute
copying build/lib/pyphi/compute/distance.py -> build/bdist.linux-x86_64/wheel/pyphi/compute
copying build/lib/pyphi/compute/__init__.py -> build/bdist.linux-x86_64/wheel/pyphi/compute
creating build/bdist.linux-x86_64/wheel/pyphi/models
copying build/lib/pyphi/models/subsystem.py -> build/bdist.linux-x86_64/wheel/pyphi/models
copying build/lib/pyphi/models/cuts.py -> build/bdist.linux-x86_64/wheel/pyphi/models
copying build/lib/pyphi/models/cmp.py -> build/bdist.linux-x86_64/wheel/pyphi/models
copying build/lib/pyphi/models/actual_causation.py -> build/bdist.linux-x86_64/wheel/pyphi/models
copying build/lib/pyphi/models/mechanism.py -> build/bdist.linux-x86_64/wheel/pyphi/models
copying build/lib/pyphi/models/fmt.py -> build/bdist.linux-x86_64/wheel/pyphi/models
copying build/lib/pyphi/models/__init__.py -> build/bdist.linux-x86_64/wheel/pyphi/models
copying build/lib/pyphi/registry.py -> build/bdist.linux-x86_64/wheel/pyphi
copying build/lib/pyphi/labels.py -> build/bdist.linux-x86_64/wheel/pyphi
copying build/lib/pyphi/db.py -> build/bdist.linux-x86_64/wheel/pyphi
copying build/lib/pyphi/validate.py -> build/bdist.linux-x86_64/wheel/pyphi
copying build/lib/pyphi/utils.py -> build/bdist.linux-x86_64/wheel/pyphi
copying build/lib/pyphi/tpm.py -> build/bdist.linux-x86_64/wheel/pyphi
copying build/lib/pyphi/timescale.py -> build/bdist.linux-x86_64/wheel/pyphi
copying build/lib/pyphi/subsystem.py -> build/bdist.linux-x86_64/wheel/pyphi
copying build/lib/pyphi/partition.py -> build/bdist.linux-x86_64/wheel/pyphi
copying build/lib/pyphi/node.py -> build/bdist.linux-x86_64/wheel/pyphi
copying build/lib/pyphi/network.py -> build/bdist.linux-x86_64/wheel/pyphi
copying build/lib/pyphi/memory.py -> build/bdist.linux-x86_64/wheel/pyphi
copying build/lib/pyphi/macro.py -> build/bdist.linux-x86_64/wheel/pyphi
copying build/lib/pyphi/log.py -> build/bdist.linux-x86_64/wheel/pyphi
copying build/lib/pyphi/jsonify.py -> build/bdist.linux-x86_64/wheel/pyphi
copying build/lib/pyphi/exceptions.py -> build/bdist.linux-x86_64/wheel/pyphi
copying build/lib/pyphi/examples.py -> build/bdist.linux-x86_64/wheel/pyphi
copying build/lib/pyphi/distribution.py -> build/bdist.linux-x86_64/wheel/pyphi
copying build/lib/pyphi/distance.py -> build/bdist.linux-x86_64/wheel/pyphi
copying build/lib/pyphi/direction.py -> build/bdist.linux-x86_64/wheel/pyphi
copying build/lib/pyphi/convert.py -> build/bdist.linux-x86_64/wheel/pyphi
copying build/lib/pyphi/constants.py -> build/bdist.linux-x86_64/wheel/pyphi
copying build/lib/pyphi/connectivity.py -> build/bdist.linux-x86_64/wheel/pyphi
copying build/lib/pyphi/conf.py -> build/bdist.linux-x86_64/wheel/pyphi
copying build/lib/pyphi/cache.py -> build/bdist.linux-x86_64/wheel/pyphi
copying build/lib/pyphi/actual.py -> build/bdist.linux-x86_64/wheel/pyphi
copying build/lib/pyphi/__init__.py -> build/bdist.linux-x86_64/wheel/pyphi
copying build/lib/pyphi/__about__.py -> build/bdist.linux-x86_64/wheel/pyphi
running install_egg_info
Copying pyphi.egg-info to build/bdist.linux-x86_64/wheel/pyphi-1.2.1-py3.11.egg-info
running install_scripts
creating build/bdist.linux-x86_64/wheel/pyphi-1.2.1.dist-info/WHEEL
creating '/builddir/build/BUILD/pyphi-1.2.1/.pyproject-builddir/pip-wheel-5le4tccp/tmpxse13bys/pyphi-1.2.1-py3-none-any.whl' and adding 'build/bdist.linux-x86_64/wheel' to it
adding 'pyphi/__about__.py'
adding 'pyphi/__init__.py'
adding 'pyphi/actual.py'
adding 'pyphi/cache.py'
adding 'pyphi/conf.py'
adding 'pyphi/connectivity.py'
adding 'pyphi/constants.py'
adding 'pyphi/convert.py'
adding 'pyphi/db.py'
adding 'pyphi/direction.py'
adding 'pyphi/distance.py'
adding 'pyphi/distribution.py'
adding 'pyphi/examples.py'
adding 'pyphi/exceptions.py'
adding 'pyphi/jsonify.py'
adding 'pyphi/labels.py'
adding 'pyphi/log.py'
adding 'pyphi/macro.py'
adding 'pyphi/memory.py'
adding 'pyphi/network.py'
adding 'pyphi/node.py'
adding 'pyphi/partition.py'
adding 'pyphi/registry.py'
adding 'pyphi/subsystem.py'
adding 'pyphi/timescale.py'
adding 'pyphi/tpm.py'
adding 'pyphi/utils.py'
adding 'pyphi/validate.py'
adding 'pyphi/compute/__init__.py'
adding 'pyphi/compute/distance.py'
adding 'pyphi/compute/network.py'
adding 'pyphi/compute/parallel.py'
adding 'pyphi/compute/subsystem.py'
adding 'pyphi/data/hamming_matrices/0.npy'
adding 'pyphi/data/hamming_matrices/1.npy'
adding 'pyphi/data/hamming_matrices/2.npy'
adding 'pyphi/data/hamming_matrices/3.npy'
adding 'pyphi/data/hamming_matrices/4.npy'
adding 'pyphi/data/hamming_matrices/5.npy'
adding 'pyphi/data/hamming_matrices/6.npy'
adding 'pyphi/data/hamming_matrices/7.npy'
adding 'pyphi/data/hamming_matrices/8.npy'
adding 'pyphi/data/hamming_matrices/9.npy'
adding 'pyphi/data/partition_lists/0.npy'
adding 'pyphi/data/partition_lists/1.npy'
adding 'pyphi/data/partition_lists/2.npy'
adding 'pyphi/data/partition_lists/3.npy'
adding 'pyphi/data/partition_lists/4.npy'
adding 'pyphi/data/partition_lists/5.npy'
adding 'pyphi/data/partition_lists/6.npy'
adding 'pyphi/data/partition_lists/7.npy'
adding 'pyphi/data/partition_lists/8.npy'
adding 'pyphi/data/partition_lists/9.npy'
adding 'pyphi/models/__init__.py'
adding 'pyphi/models/actual_causation.py'
adding 'pyphi/models/cmp.py'
adding 'pyphi/models/cuts.py'
adding 'pyphi/models/fmt.py'
adding 'pyphi/models/mechanism.py'
adding 'pyphi/models/subsystem.py'
adding 'pyphi-1.2.1.dist-info/LICENSE.md'
adding 'pyphi-1.2.1.dist-info/METADATA'
adding 'pyphi-1.2.1.dist-info/WHEEL'
adding 'pyphi-1.2.1.dist-info/top_level.txt'
adding 'pyphi-1.2.1.dist-info/RECORD'
removing build/bdist.linux-x86_64/wheel
Building wheel for pyphi (pyproject.toml): finished with status 'done'
Created wheel for pyphi: filename=pyphi-1.2.1-py3-none-any.whl size=618929 sha256=6976870b0facf953d868c4e57f4d5f8a00d83b95e707500197c78a82771c5a6c
Stored in directory: /builddir/.cache/pip/wheels/70/eb/71/e4387c68bac1c6e3b9aa93b3527f93ee1d7feda9d35e1d177b
Successfully built pyphi
+ make -C docs SPHINXBUILD=sphinx-build-3 html
make: Entering directory '/builddir/build/BUILD/pyphi-1.2.1/docs'
sphinx-build-3 -b html -d _build/doctrees . _build/html
Running Sphinx v5.3.0
Welcome to PyPhi!
If you use PyPhi in your research, please cite the paper:
Mayner WGP, Marshall W, Albantakis L, Findlay G, Marchman R, Tononi G.
(2018). PyPhi: A toolbox for integrated information theory.
PLOS Computational Biology 14(7): e1006343.
https://doi.org/10.1371/journal.pcbi.1006343
Documentation is available online (or with the built-in `help()` function):
https://pyphi.readthedocs.io
To report issues, please use the issue tracker on the GitHub repository:
https://github.com/wmayner/pyphi
For general discussion, you are welcome to join the pyphi-users group:
https://groups.google.com/forum/#!forum/pyphi-users
To suppress this message, either:
- Set `WELCOME_OFF: true` in your `pyphi_config.yml` file, or
- Set the environment variable PYPHI_WELCOME_OFF to any value in your shell:
export PYPHI_WELCOME_OFF='yes'
making output directory... done
building [mo]: targets for 0 po files that are out of date
building [html]: targets for 45 source files that are out of date
updating environment: [new config] 45 added, 0 changed, 0 removed
reading sources... [ 2%] api/actual
reading sources... [ 4%] api/cache
reading sources... [ 6%] api/compute
reading sources... [ 8%] api/compute.distance
reading sources... [ 11%] api/compute.network
reading sources... [ 13%] api/compute.parallel
reading sources... [ 15%] api/compute.subsystem
reading sources... [ 17%] api/conf
reading sources... [ 20%] api/connectivity
reading sources... [ 22%] api/constants
reading sources... [ 24%] api/convert
reading sources... [ 26%] api/direction
reading sources... [ 28%] api/distance
reading sources... [ 31%] api/distribution
reading sources... [ 33%] api/examples
reading sources... [ 35%] api/exceptions
reading sources... [ 37%] api/jsonify
reading sources... [ 40%] api/macro
reading sources... [ 42%] api/models
reading sources... [ 44%] api/models.actual_causation
reading sources... [ 46%] api/models.cuts
reading sources... [ 48%] api/models.mechanism
reading sources... [ 51%] api/models.subsystem
reading sources... [ 53%] api/network
reading sources... [ 55%] api/node
reading sources... [ 57%] api/partition
reading sources... [ 60%] api/subsystem
reading sources... [ 62%] api/timescale
reading sources... [ 64%] api/tpm
reading sources... [ 66%] api/utils
reading sources... [ 68%] api/validate
reading sources... [ 71%] caching
reading sources... [ 73%] configuration
reading sources... [ 75%] conventions
reading sources... [ 77%] examples/2014paper
reading sources... [ 80%] examples/actual_causation
reading sources... [ 82%] examples/conditional_independence
reading sources... [ 84%] examples/emergence
reading sources... [ 86%] examples/index
reading sources... [ 88%] examples/magic_cut
reading sources... [ 91%] examples/residue
reading sources... [ 93%] examples/xor
reading sources... [ 95%] index
reading sources... [ 97%] installation
reading sources... [100%] macos_installation
/builddir/build/BUILD/pyphi-1.2.1/pyphi/actual.py:docstring of pyphi.actual.Transition:67: WARNING: duplicate object description of pyphi.actual.Transition.cause_system, other instance in api/actual, use :noindex: for one of them
/builddir/build/BUILD/pyphi-1.2.1/pyphi/macro.py:docstring of pyphi.macro.MacroNetwork.emergence:1: WARNING: duplicate object description of pyphi.macro.MacroNetwork.emergence, other instance in api/macro, use :noindex: for one of them
/builddir/build/BUILD/pyphi-1.2.1/pyphi/models/cuts.py:docstring of pyphi.models.cuts.Cut.from_nodes:1: WARNING: duplicate object description of pyphi.models.cuts.Cut.from_nodes, other instance in api/models.cuts, use :noindex: for one of them
/builddir/build/BUILD/pyphi-1.2.1/pyphi/models/cuts.py:docstring of pyphi.models.cuts.Cut.to_nodes:1: WARNING: duplicate object description of pyphi.models.cuts.Cut.to_nodes, other instance in api/models.cuts, use :noindex: for one of them
looking for now-outdated files... none found
pickling environment... done
checking consistency... done
preparing documents... done
writing output... [ 2%] api/actual
writing output... [ 4%] api/cache
writing output... [ 6%] api/compute
writing output... [ 8%] api/compute.distance
writing output... [ 11%] api/compute.network
writing output... [ 13%] api/compute.parallel
writing output... [ 15%] api/compute.subsystem
writing output... [ 17%] api/conf
writing output... [ 20%] api/connectivity
writing output... [ 22%] api/constants
writing output... [ 24%] api/convert
writing output... [ 26%] api/direction
writing output... [ 28%] api/distance
writing output... [ 31%] api/distribution
writing output... [ 33%] api/examples
writing output... [ 35%] api/exceptions
writing output... [ 37%] api/jsonify
writing output... [ 40%] api/macro
writing output... [ 42%] api/models
writing output... [ 44%] api/models.actual_causation
writing output... [ 46%] api/models.cuts
writing output... [ 48%] api/models.mechanism
writing output... [ 51%] api/models.subsystem
writing output... [ 53%] api/network
writing output... [ 55%] api/node
writing output... [ 57%] api/partition
writing output... [ 60%] api/subsystem
writing output... [ 62%] api/timescale
writing output... [ 64%] api/tpm
writing output... [ 66%] api/utils
writing output... [ 68%] api/validate
writing output... [ 71%] caching
writing output... [ 73%] configuration
writing output... [ 75%] conventions
writing output... [ 77%] examples/2014paper
writing output... [ 80%] examples/actual_causation
writing output... [ 82%] examples/conditional_independence
writing output... [ 84%] examples/emergence
writing output... [ 86%] examples/index
writing output... [ 88%] examples/magic_cut
writing output... [ 91%] examples/residue
writing output... [ 93%] examples/xor
writing output... [ 95%] index
writing output... [ 97%] installation
writing output... [100%] macos_installation
/builddir/build/BUILD/pyphi-1.2.1/pyphi/actual.py:docstring of pyphi.actual.true_events:1: WARNING: more than one target found for cross-reference 'AcSystemIrreducibilityAnalysis': pyphi.models.AcSystemIrreducibilityAnalysis, pyphi.models.actual_causation.AcSystemIrreducibilityAnalysis
/builddir/build/BUILD/pyphi-1.2.1/pyphi/actual.py:docstring of pyphi.actual.extrinsic_events:1: WARNING: more than one target found for cross-reference 'AcSystemIrreducibilityAnalysis': pyphi.models.AcSystemIrreducibilityAnalysis, pyphi.models.actual_causation.AcSystemIrreducibilityAnalysis
/builddir/build/BUILD/pyphi-1.2.1/pyphi/subsystem.py:docstring of pyphi.subsystem.Subsystem:1: WARNING: more than one target found for cross-reference 'Cut': pyphi.models.Cut, pyphi.models.cuts.Cut
generating indices... genindex py-modindex done
writing additional pages... search done
copying images... [100%] _static/connectivity-matrix-example-network.png
copying static files... done
copying extra files... done
dumping search index in English (code: en)... done
dumping object inventory... done
build succeeded, 7 warnings.
The HTML pages are in _build/html.
Build finished. The HTML pages are in _build/html.
make: Leaving directory '/builddir/build/BUILD/pyphi-1.2.1/docs'
+ rm docs/_build/html/.doctrees docs/_build/html/.buildinfo -vf
removed 'docs/_build/html/.buildinfo'
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.yCCxwU
+ umask 022
+ cd /builddir/build/BUILD
+ '[' /builddir/build/BUILDROOT/python-pyphi-1.2.1-6.fc38.x86_64 '!=' / ']'
+ rm -rf /builddir/build/BUILDROOT/python-pyphi-1.2.1-6.fc38.x86_64
++ dirname /builddir/build/BUILDROOT/python-pyphi-1.2.1-6.fc38.x86_64
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir /builddir/build/BUILDROOT/python-pyphi-1.2.1-6.fc38.x86_64
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer'
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer'
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules'
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes'
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd pyphi-1.2.1
++ ls /builddir/build/BUILD/pyphi-1.2.1/pyproject-wheeldir/pyphi-1.2.1-py3-none-any.whl
++ xargs basename --multiple
++ sed -E 's/([^-]+)-([^-]+)-.+\.whl/\1==\2/'
+ specifier=pyphi==1.2.1
+ TMPDIR=/builddir/build/BUILD/pyphi-1.2.1/.pyproject-builddir
+ /usr/bin/python3 -m pip install --root /builddir/build/BUILDROOT/python-pyphi-1.2.1-6.fc38.x86_64 --prefix /usr --no-deps --disable-pip-version-check --progress-bar off --verbose --ignore-installed --no-warn-script-location --no-index --no-cache-dir --find-links /builddir/build/BUILD/pyphi-1.2.1/pyproject-wheeldir pyphi==1.2.1
Using pip 22.3.1 from /usr/lib/python3.11/site-packages/pip (python 3.11)
Looking in links: /builddir/build/BUILD/pyphi-1.2.1/pyproject-wheeldir
Processing ./pyproject-wheeldir/pyphi-1.2.1-py3-none-any.whl
Installing collected packages: pyphi
Successfully installed pyphi-1.2.1
+ '[' -d /builddir/build/BUILDROOT/python-pyphi-1.2.1-6.fc38.x86_64/usr/bin ']'
+ rm -f /builddir/build/BUILD/python-pyphi-1.2.1-6.fc38.x86_64-pyproject-ghost-distinfo
+ site_dirs=()
+ '[' -d /builddir/build/BUILDROOT/python-pyphi-1.2.1-6.fc38.x86_64/usr/lib/python3.11/site-packages ']'
+ site_dirs+=("/usr/lib/python3.11/site-packages")
+ '[' /builddir/build/BUILDROOT/python-pyphi-1.2.1-6.fc38.x86_64/usr/lib64/python3.11/site-packages '!=' /builddir/build/BUILDROOT/python-pyphi-1.2.1-6.fc38.x86_64/usr/lib/python3.11/site-packages ']'
+ '[' -d /builddir/build/BUILDROOT/python-pyphi-1.2.1-6.fc38.x86_64/usr/lib64/python3.11/site-packages ']'
+ for site_dir in ${site_dirs[@]}
+ for distinfo in /builddir/build/BUILDROOT/python-pyphi-1.2.1-6.fc38.x86_64$site_dir/*.dist-info
+ echo '%ghost /usr/lib/python3.11/site-packages/pyphi-1.2.1.dist-info'
+ sed -i s/pip/rpm/ /builddir/build/BUILDROOT/python-pyphi-1.2.1-6.fc38.x86_64/usr/lib/python3.11/site-packages/pyphi-1.2.1.dist-info/INSTALLER
+ PYTHONPATH=/usr/lib/rpm/redhat
+ /usr/bin/python3 -B /usr/lib/rpm/redhat/pyproject_preprocess_record.py --buildroot /builddir/build/BUILDROOT/python-pyphi-1.2.1-6.fc38.x86_64 --record /builddir/build/BUILDROOT/python-pyphi-1.2.1-6.fc38.x86_64/usr/lib/python3.11/site-packages/pyphi-1.2.1.dist-info/RECORD --output /builddir/build/BUILD/python-pyphi-1.2.1-6.fc38.x86_64-pyproject-record
+ rm -fv /builddir/build/BUILDROOT/python-pyphi-1.2.1-6.fc38.x86_64/usr/lib/python3.11/site-packages/pyphi-1.2.1.dist-info/RECORD
removed '/builddir/build/BUILDROOT/python-pyphi-1.2.1-6.fc38.x86_64/usr/lib/python3.11/site-packages/pyphi-1.2.1.dist-info/RECORD'
+ rm -fv /builddir/build/BUILDROOT/python-pyphi-1.2.1-6.fc38.x86_64/usr/lib/python3.11/site-packages/pyphi-1.2.1.dist-info/REQUESTED
removed '/builddir/build/BUILDROOT/python-pyphi-1.2.1-6.fc38.x86_64/usr/lib/python3.11/site-packages/pyphi-1.2.1.dist-info/REQUESTED'
++ wc -l /builddir/build/BUILD/python-pyphi-1.2.1-6.fc38.x86_64-pyproject-ghost-distinfo
++ cut -f1 '-d '
+ lines=1
+ '[' 1 -ne 1 ']'
+ /usr/bin/python3 /usr/lib/rpm/redhat/pyproject_save_files.py --output-files /builddir/build/BUILD/python-pyphi-1.2.1-6.fc38.x86_64-pyproject-files --output-modules /builddir/build/BUILD/python-pyphi-1.2.1-6.fc38.x86_64-pyproject-modules --buildroot /builddir/build/BUILDROOT/python-pyphi-1.2.1-6.fc38.x86_64 --sitelib /usr/lib/python3.11/site-packages --sitearch /usr/lib64/python3.11/site-packages --python-version 3.11 --pyproject-record /builddir/build/BUILD/python-pyphi-1.2.1-6.fc38.x86_64-pyproject-record --prefix /usr pyphi
+ /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 1.2.1-6.fc38 --unique-debug-suffix -1.2.1-6.fc38.x86_64 --unique-debug-src-base python-pyphi-1.2.1-6.fc38.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/pyphi-1.2.1
find: 'debug': No such file or directory
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/check-rpaths
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
+ /usr/lib/rpm/brp-remove-la-files
+ env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2
Bytecompiling .py files below /builddir/build/BUILDROOT/python-pyphi-1.2.1-6.fc38.x86_64/usr/lib/python3.11 using python3.11
+ /usr/lib/rpm/redhat/brp-python-hardlink
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.OyZ3oY
+ umask 022
+ cd /builddir/build/BUILD
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer'
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer'
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules'
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes'
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd pyphi-1.2.1
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer'
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes'
+ PATH=/builddir/build/BUILDROOT/python-pyphi-1.2.1-6.fc38.x86_64/usr/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin
+ PYTHONPATH=/builddir/build/BUILDROOT/python-pyphi-1.2.1-6.fc38.x86_64/usr/lib64/python3.11/site-packages:/builddir/build/BUILDROOT/python-pyphi-1.2.1-6.fc38.x86_64/usr/lib/python3.11/site-packages
+ PYTHONDONTWRITEBYTECODE=1
+ PYTEST_ADDOPTS=' --ignore=/builddir/build/BUILD/pyphi-1.2.1/.pyproject-builddir'
+ PYTEST_XDIST_AUTO_NUM_WORKERS=2
+ /usr/bin/pytest
============================= test session starts ==============================
platform linux -- Python 3.11.1, pytest-7.2.0, pluggy-1.0.0 -- /usr/bin/python3
cachedir: .pytest_cache
rootdir: /builddir/build/BUILD/pyphi-1.2.1, configfile: pytest.ini
plugins: lazy-fixture-0.6.3
collecting ... collected 578 items
docs/conventions.rst::conventions.rst PASSED [ 0%]
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pyphi/distance.py::pyphi.distance._hamming_matrix PASSED [ 3%]
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test/test_actual.py::test_unconstrained_probability PASSED [ 15%]
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test/test_convert.py::test_nondet_state_by_state2state_by_node PASSED [ 37%]
test/test_convert.py::test_2_d_state_by_node2state_by_state PASSED [ 37%]
test/test_convert.py::test_n_d_state_by_node2state_by_state PASSED [ 37%]
test/test_direction.py::test_direction_order PASSED [ 37%]
test/test_direction.py::test_direction_json[CAUSE-json_dict0] PASSED [ 38%]
test/test_direction.py::test_direction_json[EFFECT-json_dict1] PASSED [ 38%]
test/test_direction.py::test_direction_json[BIDIRECTIONAL-json_dict2] PASSED [ 38%]
test/test_direction.py::test_direction_str PASSED [ 38%]
test/test_distance.py::test_hamming_matrix PASSED [ 38%]
test/test_distance.py::test_large_hamming_matrix PASSED [ 38%]
test/test_distance.py::test_emd_same_distributions PASSED [ 39%]
test/test_distance.py::test_emd_validates_distribution_shapes PASSED [ 39%]
test/test_distance.py::test_l1_distance PASSED [ 39%]
test/test_distance.py::test_entropy_difference PASSED [ 39%]
test/test_distance.py::test_kld PASSED [ 39%]
test/test_distance.py::test_psq2 PASSED [ 39%]
test/test_distance.py::test_mp2q PASSED [ 40%]
test/test_distance.py::test_klm PASSED [ 40%]
test/test_distance.py::test_default_measures PASSED [ 40%]
test/test_distance.py::test_default_asymmetric_measures PASSED [ 40%]
test/test_distance.py::test_system_repertoire_distance_must_be_symmetric PASSED [ 40%]
test/test_distance.py::test_suppress_np_warnings PASSED [ 41%]
test/test_distribution.py::test_normalize PASSED [ 41%]
test/test_distribution.py::test_uniform_distribution PASSED [ 41%]
test/test_distribution.py::test_purview_max_entropy_distribution PASSED [ 41%]
test/test_distribution.py::test_marginal_zero PASSED [ 41%]
test/test_distribution.py::test_marginal PASSED [ 41%]
test/test_distribution.py::test_independent PASSED [ 42%]
test/test_distribution.py::test_purview_size PASSED [ 42%]
test/test_distribution.py::test_purview PASSED [ 42%]
test/test_distribution.py::test_repertoire_shape PASSED [ 42%]
test/test_distribution.py::test_flatten PASSED [ 42%]
test/test_json.py::test_jsonify_native PASSED [ 42%]
test/test_json.py::test_jsonify_numpy PASSED [ 43%]
test/test_json.py::test_json_deserialization PASSED [ 43%]
test/test_json.py::test_json_deserialization_non_pyphi_clasess PASSED [ 43%]
test/test_json.py::test_deserialization_memoizes_duplicate_objects PASSED [ 43%]
test/test_json.py::test_load PASSED [ 43%]
test/test_json.py::test_network_from_json PASSED [ 43%]
test/test_json.py::test_version_check_during_deserialization PASSED [ 44%]
test/test_labels.py::test_defaults PASSED [ 44%]
test/test_labels.py::test_labels2indices PASSED [ 44%]
test/test_labels.py::test_indices2labels PASSED [ 44%]
test/test_labels.py::test_coerce_to_indices PASSED [ 44%]
test/test_labels.py::test_iterable PASSED [ 44%]
test/test_labels.py::test_len PASSED [ 45%]
test/test_labels.py::test_contains PASSED [ 45%]
test/test_labels.py::test_instantiation_from_other_node_labels_object PASSED [ 45%]
test/test_macro.py::test_all_partitions PASSED [ 45%]
test/test_macro.py::test_all_groupings PASSED [ 45%]
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test/test_macro.py::test_all_blackboxes PASSED [ 46%]
test/test_macro.py::test_make_mapping PASSED [ 46%]
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test/test_macro.py::test_macro_tpm_sbs PASSED [ 47%]
test/test_macro.py::test_coarse_grain_indices PASSED [ 47%]
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test/test_macro.py::test_coarse_grain_len PASSED [ 47%]
test/test_macro.py::test_blackbox_indices PASSED [ 47%]
test/test_macro.py::test_blackbox_state PASSED [ 47%]
test/test_macro.py::test_blackbox_same_box PASSED [ 48%]
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test/test_macro.py::test_blackbox_outputs_of PASSED [ 48%]
test/test_macro.py::test_blackbox_len PASSED [ 48%]
test/test_macro.py::test_rebuild_system_tpm PASSED [ 48%]
test/test_macro.py::test_remove_singleton_dimensions PASSED [ 48%]
test/test_macro.py::test_pack_attrs PASSED [ 49%]
test/test_macro.py::test_apply_attrs PASSED [ 49%]
test/test_macro_blackbox.py::test_basic_nor_or SKIPPED (need --veryslow option to run) [ 49%]
test/test_macro_blackbox.py::test_xor_propogation_delay SKIPPED (need --veryslow option to run) [ 49%]
test/test_macro_blackbox.py::test_soup XFAIL [ 49%]
test/test_macro_blackbox.py::test_coarsegrain_spatial_degenerate SKIPPED (need --slow option to run) [ 50%]
test/test_macro_blackbox.py::test_degenerate PASSED [ 50%]
test/test_macro_blackbox.py::test_basic_propagation_delay PASSED [ 50%]
test/test_macro_subsystem.py::test_cut_indices PASSED [ 50%]
test/test_macro_subsystem.py::test_cut_mechanisms PASSED [ 50%]
test/test_macro_subsystem.py::test_cut_node_labels_are_for_micro_elements PASSED [ 50%]
test/test_macro_subsystem.py::test_concept_str_uses_macro_node_labels PASSED [ 51%]
test/test_macro_subsystem.py::test_node_indices_can_be_none PASSED [ 51%]
test/test_macro_subsystem.py::test_pass_node_indices_as_a_range PASSED [ 51%]
test/test_macro_subsystem.py::test_node_labels PASSED [ 51%]
test/test_macro_subsystem.py::test_macro_subsystem PASSED [ 51%]
test/test_macro_subsystem.py::test_macro_cut_subsystem PASSED [ 51%]
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test/test_macro_subsystem.py::test_macro_cut_is_for_micro_indices PASSED [ 52%]
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test/test_macro_subsystem.py::test_blackbox PASSED [ 53%]
test/test_macro_subsystem.py::test_blackbox_external PASSED [ 53%]
test/test_macro_subsystem.py::test_coarse_grain PASSED [ 53%]
test/test_macro_subsystem.py::test_blackbox_and_coarse_grain XFAIL [ 53%]
test/test_macro_subsystem.py::test_blackbox_and_coarse_grain_external PASSED [ 53%]
test/test_macro_subsystem.py::test_blackbox_emergence SKIPPED (need --veryslow option to run) [ 53%]
test/test_macro_subsystem.py::test_macro2micro PASSED [ 54%]
test/test_macro_subsystem.py::test_blackbox_partial_noise PASSED [ 54%]
test/test_macro_subsystem.py::test_blackbox_timescale XFAIL [ 54%]
test/test_models.py::test_phi_mechanism_ordering PASSED [ 54%]
test/test_models.py::test_sametype_decorator PASSED [ 54%]
test/test_models.py::test_numpy_aware_eq_noniterable PASSED [ 55%]
test/test_models.py::test_numpy_aware_eq_nparray PASSED [ 55%]
test/test_models.py::test_numpy_aware_eq_tuple_nparrays PASSED [ 55%]
test/test_models.py::test_numpy_aware_eq_identical PASSED [ 55%]
test/test_models.py::test_general_eq_different_attributes PASSED [ 55%]
test/test_models.py::test_general_eq_phi_precision_comparison_true PASSED [ 55%]
test/test_models.py::test_general_eq_phi_precision_comparison_false PASSED [ 56%]
test/test_models.py::test_general_eq_different_mechanism_order PASSED [ 56%]
test/test_models.py::test_general_eq_different_purview_order PASSED [ 56%]
test/test_models.py::test_general_eq_different_mechanism_and_purview_order PASSED [ 56%]
test/test_models.py::test_general_eq_purview_mechanism_none PASSED [ 56%]
test/test_models.py::test_general_eq_attribute_missing PASSED [ 56%]
test/test_models.py::test_cut_equality PASSED [ 57%]
test/test_models.py::test_cut_splits_mechanism PASSED [ 57%]
test/test_models.py::test_cut_splits_connections PASSED [ 57%]
test/test_models.py::test_cut_all_cut_mechanisms PASSED [ 57%]
test/test_models.py::test_cut_matrix PASSED [ 57%]
test/test_models.py::test_cut_indices PASSED [ 57%]
test/test_models.py::test_apply_cut PASSED [ 58%]
test/test_models.py::test_cut_is_null PASSED [ 58%]
test/test_models.py::test_null_cut PASSED [ 58%]
test/test_models.py::test_null_cut_str PASSED [ 58%]
test/test_models.py::test_null_cut_equality PASSED [ 58%]
test/test_models.py::test_cuts_can_have_node_labels PASSED [ 58%]
test/test_models.py::test_ria_ordering_and_equality PASSED [ 59%]
test/test_models.py::test_null_ria PASSED [ 59%]
test/test_models.py::test_ria_repr_str PASSED [ 59%]
test/test_models.py::test_mice_ordering_by_phi PASSED [ 59%]
test/test_models.py::test_mice_odering_by_mechanism PASSED [ 59%]
test/test_models.py::test_mice_ordering_by_purview PASSED [ 60%]
test/test_models.py::test_mice_equality PASSED [ 60%]
test/test_models.py::test_mice_repr_str PASSED [ 60%]
test/test_models.py::test_relevant_connections PASSED [ 60%]
test/test_models.py::test_damaged PASSED [ 60%]
test/test_models.py::test_mic_raises_wrong_direction PASSED [ 60%]
test/test_models.py::test_mie_raises_wrong_direction PASSED [ 61%]
test/test_models.py::test_concept_ordering PASSED [ 61%]
test/test_models.py::test_concept_ordering_by_mechanism PASSED [ 61%]
test/test_models.py::test_concept_equality PASSED [ 61%]
test/test_models.py::test_concept_equality_phi PASSED [ 61%]
test/test_models.py::test_concept_equality_cause_purview_nodes PASSED [ 61%]
test/test_models.py::test_concept_equality_effect_purview_nodes PASSED [ 62%]
test/test_models.py::test_concept_equality_repertoires PASSED [ 62%]
test/test_models.py::test_concept_equality_network PASSED [ 62%]
test/test_models.py::test_concept_equality_one_subsystem_is_subset_of_another PASSED [ 62%]
test/test_models.py::test_concept_repr_str PASSED [ 62%]
test/test_models.py::test_concept_hashing PASSED [ 62%]
test/test_models.py::test_concept_hashing_one_subsystem_is_subset_of_another PASSED [ 63%]
test/test_models.py::test_concept_emd_eq PASSED [ 63%]
test/test_models.py::test_ces_is_still_a_tuple PASSED [ 63%]
test/test_models.py::test_ces_repr_str PASSED [ 63%]
test/test_models.py::test_ces_are_always_normalized PASSED [ 63%]
test/test_models.py::test_ces_labeled_mechanisms PASSED [ 64%]
test/test_models.py::test_ces_ordering PASSED [ 64%]
test/test_models.py::test_sia_ordering PASSED [ 64%]
test/test_models.py::test_sia_ordering_by_subsystem_size PASSED [ 64%]
test/test_models.py::test_sia_equality PASSED [ 64%]
test/test_models.py::test_sia_repr_str PASSED [ 64%]
test/test_models.py::test_indent PASSED [ 65%]
test/test_models.py::test_make_reprs_uses___repr__ PASSED [ 65%]
test/test_models.py::test_make_reprs_calls_out_to_string PASSED [ 65%]
test/test_models.py::test_bipartition_properties PASSED [ 65%]
test/test_models.py::test_bipartition_str PASSED [ 65%]
test/test_models.py::test_tripartion_properties PASSED [ 65%]
test/test_models.py::test_tripartion_str PASSED [ 66%]
test/test_models.py::test_partition_normalize PASSED [ 66%]
test/test_models.py::test_partition_normalize_preserves_labels PASSED [ 66%]
test/test_models.py::test_partition_eq_hash PASSED [ 66%]
test/test_network.py::test_network_init_validation PASSED [ 66%]
test/test_network.py::test_network_creates_fully_connected_cm_by_default PASSED [ 66%]
test/test_network.py::test_potential_purviews PASSED [ 67%]
test/test_network.py::test_node_labels PASSED [ 67%]
test/test_network.py::test_num_states PASSED [ 67%]
test/test_network.py::test_repr PASSED [ 67%]
test/test_network.py::test_str PASSED [ 67%]
test/test_network.py::test_len PASSED [ 67%]
test/test_network.py::test_size PASSED [ 68%]
test/test_node.py::test_node_init_tpm PASSED [ 68%]
test/test_node.py::test_node_init_inputs PASSED [ 68%]
test/test_node.py::test_node_eq PASSED [ 68%]
test/test_node.py::test_node_neq_by_index PASSED [ 68%]
test/test_node.py::test_node_neq_by_state PASSED [ 69%]
test/test_node.py::test_repr PASSED [ 69%]
test/test_node.py::test_str PASSED [ 69%]
test/test_node.py::test_expand_tpm PASSED [ 69%]
test/test_node.py::test_generate_nodes PASSED [ 69%]
test/test_node.py::test_generate_nodes_default_labels PASSED [ 69%]
test/test_parallel.py::test_num_processes PASSED [ 70%]
test/test_parallel.py::test_map_square PASSED [ 70%]
test/test_parallel.py::test_materialize_list_only_when_needed PASSED [ 70%]
test/test_parallel.py::test_parallel_exception_handling PASSED [ 70%]
test/test_parallel.py::test_config_persists_through_paralellization PASSED [ 70%]
test/test_partition.py::test_partitions PASSED [ 70%]
test/test_partition.py::test_directed_bipartition PASSED [ 71%]
test/test_partition.py::test_directed_tripartition_indices PASSED [ 71%]
test/test_partition.py::test_k_partition PASSED [ 71%]
test/test_partition.py::test_mip_bipartitions PASSED [ 71%]
test/test_partition.py::test_wedge_partitions PASSED [ 71%]
test/test_partition.py::test_partitioned_repertoire_with_tripartition PASSED [ 71%]
test/test_partition.py::test_tripartitions_choses_smallest_purview PASSED [ 72%]
test/test_partition.py::test_all_partitions PASSED [ 72%]
test/test_partition.py::test_partition_types PASSED [ 72%]
test/test_registry.py::test_registry PASSED [ 72%]
test/test_subsystem.py::test_subsystem_validation PASSED [ 72%]
test/test_subsystem.py::test_validate_cut_nodes_equal_subsystem_nodes PASSED [ 73%]
test/test_subsystem.py::test_empty_init PASSED [ 73%]
test/test_subsystem.py::test_default_nodes PASSED [ 73%]
test/test_subsystem.py::test_eq PASSED [ 73%]
test/test_subsystem.py::test_cmp PASSED [ 73%]
test/test_subsystem.py::test_len PASSED [ 73%]
test/test_subsystem.py::test_size PASSED [ 74%]
test/test_subsystem.py::test_hash PASSED [ 74%]
test/test_subsystem.py::test_indices2nodes PASSED [ 74%]
test/test_subsystem.py::test_indices2nodes_with_bad_indices PASSED [ 74%]
test/test_subsystem.py::test_is_cut PASSED [ 74%]
test/test_subsystem.py::test_proper_state PASSED [ 74%]
test/test_subsystem.py::test_apply_cut PASSED [ 75%]
test/test_subsystem.py::test_cut_indices PASSED [ 75%]
test/test_subsystem.py::test_cut_mechanisms PASSED [ 75%]
test/test_subsystem.py::test_cut_node_labels PASSED [ 75%]
test/test_subsystem.py::test_specify_elements_with_labels PASSED [ 75%]
test/test_subsystem.py::test_null_concept PASSED [ 75%]
test/test_subsystem.py::test_concept_no_mechanism PASSED [ 76%]
test/test_subsystem.py::test_concept_nonexistent PASSED [ 76%]
test/test_subsystem_cause_effect_info.py::test_cause_info PASSED [ 76%]
test/test_subsystem_cause_effect_info.py::test_effect_info PASSED [ 76%]
test/test_subsystem_cause_effect_info.py::test_cause_effect_info PASSED [ 76%]
test/test_subsystem_cause_effect_repertoire.py::test_cause_and_effect_repertoire[cause_repertoire-subsystem0-mechanism0-purview0-expected0] PASSED [ 76%]
test/test_subsystem_cause_effect_repertoire.py::test_cause_and_effect_repertoire[cause_repertoire-subsystem1-mechanism1-purview1-expected1] PASSED [ 77%]
test/test_subsystem_cause_effect_repertoire.py::test_cause_and_effect_repertoire[cause_repertoire-subsystem2-mechanism2-purview2-expected2] PASSED [ 77%]
test/test_subsystem_cause_effect_repertoire.py::test_cause_and_effect_repertoire[cause_repertoire-subsystem3-mechanism3-purview3-expected3] PASSED [ 77%]
test/test_subsystem_cause_effect_repertoire.py::test_cause_and_effect_repertoire[cause_repertoire-subsystem4-mechanism4-purview4-expected4] PASSED [ 77%]
test/test_subsystem_cause_effect_repertoire.py::test_cause_and_effect_repertoire[cause_repertoire-subsystem5-mechanism5-purview5-expected5] PASSED [ 77%]
test/test_subsystem_cause_effect_repertoire.py::test_cause_and_effect_repertoire[cause_repertoire-subsystem6-mechanism6-purview6-expected6] PASSED [ 78%]
test/test_subsystem_cause_effect_repertoire.py::test_cause_and_effect_repertoire[cause_repertoire-subsystem7-mechanism7-purview7-expected7] PASSED [ 78%]
test/test_subsystem_cause_effect_repertoire.py::test_cause_and_effect_repertoire[cause_repertoire-subsystem8-mechanism8-purview8-expected8] PASSED [ 78%]
test/test_subsystem_cause_effect_repertoire.py::test_cause_and_effect_repertoire[cause_repertoire-subsystem9-mechanism9-purview9-expected9] PASSED [ 78%]
test/test_subsystem_cause_effect_repertoire.py::test_cause_and_effect_repertoire[cause_repertoire-subsystem10-mechanism10-purview10-expected10] PASSED [ 78%]
test/test_subsystem_cause_effect_repertoire.py::test_cause_and_effect_repertoire[cause_repertoire-subsystem11-mechanism11-purview11-expected11] PASSED [ 78%]
test/test_subsystem_cause_effect_repertoire.py::test_cause_and_effect_repertoire[cause_repertoire-subsystem12-mechanism12-purview12-expected12] PASSED [ 79%]
test/test_subsystem_cause_effect_repertoire.py::test_cause_and_effect_repertoire[cause_repertoire-subsystem13-mechanism13-purview13-expected13] PASSED [ 79%]
test/test_subsystem_cause_effect_repertoire.py::test_cause_and_effect_repertoire[cause_repertoire-subsystem14-mechanism14-purview14-expected14] PASSED [ 79%]
test/test_subsystem_cause_effect_repertoire.py::test_cause_and_effect_repertoire[cause_repertoire-subsystem15-mechanism15-purview15-expected15] PASSED [ 79%]
test/test_subsystem_cause_effect_repertoire.py::test_cause_and_effect_repertoire[effect_repertoire-subsystem16-mechanism16-purview16-expected16] PASSED [ 79%]
test/test_subsystem_cause_effect_repertoire.py::test_cause_and_effect_repertoire[effect_repertoire-subsystem17-mechanism17-purview17-expected17] PASSED [ 79%]
test/test_subsystem_cause_effect_repertoire.py::test_cause_and_effect_repertoire[effect_repertoire-subsystem18-mechanism18-purview18-expected18] PASSED [ 80%]
test/test_subsystem_cause_effect_repertoire.py::test_cause_and_effect_repertoire[effect_repertoire-subsystem19-mechanism19-purview19-expected19] PASSED [ 80%]
test/test_subsystem_cause_effect_repertoire.py::test_cause_and_effect_repertoire[effect_repertoire-subsystem20-mechanism20-purview20-expected20] PASSED [ 80%]
test/test_subsystem_cause_effect_repertoire.py::test_cause_and_effect_repertoire[effect_repertoire-subsystem21-mechanism21-purview21-expected21] PASSED [ 80%]
test/test_subsystem_cause_effect_repertoire.py::test_cause_and_effect_repertoire[effect_repertoire-subsystem22-mechanism22-purview22-expected22] PASSED [ 80%]
test/test_subsystem_cause_effect_repertoire.py::test_cause_and_effect_repertoire[effect_repertoire-subsystem23-mechanism23-purview23-expected23] PASSED [ 80%]
test/test_subsystem_cause_effect_repertoire.py::test_cause_and_effect_repertoire[effect_repertoire-subsystem24-mechanism24-purview24-expected24] PASSED [ 81%]
test/test_subsystem_cause_effect_repertoire.py::test_cause_and_effect_repertoire[effect_repertoire-subsystem25-mechanism25-purview25-expected25] PASSED [ 81%]
test/test_subsystem_cause_effect_repertoire.py::test_cause_and_effect_repertoire[effect_repertoire-subsystem26-mechanism26-purview26-expected26] PASSED [ 81%]
test/test_subsystem_cause_effect_repertoire.py::test_cause_and_effect_repertoire[effect_repertoire-subsystem27-mechanism27-purview27-expected27] PASSED [ 81%]
test/test_subsystem_cause_effect_repertoire.py::test_cause_and_effect_repertoire[effect_repertoire-subsystem28-mechanism28-purview28-expected28] PASSED [ 81%]
test/test_subsystem_cause_effect_repertoire.py::test_cause_and_effect_repertoire[effect_repertoire-subsystem29-mechanism29-purview29-expected29] PASSED [ 82%]
test/test_subsystem_cause_effect_repertoire.py::test_cause_and_effect_repertoire[effect_repertoire-subsystem30-mechanism30-purview30-expected30] PASSED [ 82%]
test/test_subsystem_cause_effect_repertoire.py::test_cause_and_effect_repertoire[effect_repertoire-subsystem31-mechanism31-purview31-expected31] PASSED [ 82%]
test/test_subsystem_cause_effect_repertoire.py::test_cause_and_effect_repertoire[effect_repertoire-subsystem32-mechanism32-purview32-expected32] PASSED [ 82%]
test/test_subsystem_cause_effect_repertoire.py::test_cause_and_effect_repertoire[effect_repertoire-subsystem33-mechanism33-purview33-expected33] PASSED [ 82%]
test/test_subsystem_cause_effect_repertoire.py::test_cause_and_effect_repertoire[effect_repertoire-subsystem34-mechanism34-purview34-expected34] PASSED [ 82%]
test/test_subsystem_cause_effect_repertoire.py::test_cause_and_effect_repertoire[effect_repertoire-subsystem35-mechanism35-purview35-expected35] PASSED [ 83%]
test/test_subsystem_cause_effect_repertoire.py::test_repertoire_wrong_direction_error PASSED [ 83%]
test/test_subsystem_expand.py::test_expand_cause_repertoire PASSED [ 83%]
test/test_subsystem_expand.py::test_expand_effect_repertoire PASSED [ 83%]
test/test_subsystem_expand.py::test_expand_repertoire_purview_must_be_subset_of_new_purview PASSED [ 83%]
test/test_subsystem_phi_max.py::test_find_mice[None-CAUSE-expected0] PASSED [ 83%]
test/test_subsystem_phi_max.py::test_find_mice[None-CAUSE-expected1] PASSED [ 84%]
test/test_subsystem_phi_max.py::test_find_mice[None-CAUSE-expected2] PASSED [ 84%]
test/test_subsystem_phi_max.py::test_find_mice[None-CAUSE-expected3] PASSED [ 84%]
test/test_subsystem_phi_max.py::test_find_mice[None-EFFECT-expected4] PASSED [ 84%]
test/test_subsystem_phi_max.py::test_find_mice[None-EFFECT-expected5] PASSED [ 84%]
test/test_subsystem_phi_max.py::test_find_mice[None-EFFECT-expected6] PASSED [ 84%]
test/test_subsystem_phi_max.py::test_find_mice[None-EFFECT-expected7] PASSED [ 85%]
test/test_subsystem_phi_max.py::test_find_mice[cut8-CAUSE-expected8] PASSED [ 85%]
test/test_subsystem_phi_max.py::test_find_mice[cut9-CAUSE-expected9] PASSED [ 85%]
test/test_subsystem_phi_max.py::test_find_mice[cut10-CAUSE-expected10] PASSED [ 85%]
test/test_subsystem_phi_max.py::test_find_mice[cut11-CAUSE-expected11] PASSED [ 85%]
test/test_subsystem_phi_max.py::test_find_mice[cut12-EFFECT-expected12] PASSED [ 85%]
test/test_subsystem_phi_max.py::test_find_mice[cut13-EFFECT-expected13] PASSED [ 86%]
test/test_subsystem_phi_max.py::test_find_mice[cut14-EFFECT-expected14] PASSED [ 86%]
test/test_subsystem_phi_max.py::test_find_mice[cut15-EFFECT-expected15] PASSED [ 86%]
test/test_subsystem_phi_max.py::test_find_mice_empty PASSED [ 86%]
test/test_subsystem_phi_max.py::test_mic_or_mie[None-CAUSE-expected0] PASSED [ 86%]
test/test_subsystem_phi_max.py::test_mic_or_mie[None-CAUSE-expected1] PASSED [ 87%]
test/test_subsystem_phi_max.py::test_mic_or_mie[None-CAUSE-expected2] PASSED [ 87%]
test/test_subsystem_phi_max.py::test_mic_or_mie[None-CAUSE-expected3] PASSED [ 87%]
test/test_subsystem_phi_max.py::test_mic_or_mie[None-EFFECT-expected4] PASSED [ 87%]
test/test_subsystem_phi_max.py::test_mic_or_mie[None-EFFECT-expected5] PASSED [ 87%]
test/test_subsystem_phi_max.py::test_mic_or_mie[None-EFFECT-expected6] PASSED [ 87%]
test/test_subsystem_phi_max.py::test_mic_or_mie[None-EFFECT-expected7] PASSED [ 88%]
test/test_subsystem_phi_max.py::test_mic_or_mie[cut8-CAUSE-expected8] PASSED [ 88%]
test/test_subsystem_phi_max.py::test_mic_or_mie[cut9-CAUSE-expected9] PASSED [ 88%]
test/test_subsystem_phi_max.py::test_mic_or_mie[cut10-CAUSE-expected10] PASSED [ 88%]
test/test_subsystem_phi_max.py::test_mic_or_mie[cut11-CAUSE-expected11] PASSED [ 88%]
test/test_subsystem_phi_max.py::test_mic_or_mie[cut12-EFFECT-expected12] PASSED [ 88%]
test/test_subsystem_phi_max.py::test_mic_or_mie[cut13-EFFECT-expected13] PASSED [ 89%]
test/test_subsystem_phi_max.py::test_mic_or_mie[cut14-EFFECT-expected14] PASSED [ 89%]
test/test_subsystem_phi_max.py::test_mic_or_mie[cut15-EFFECT-expected15] PASSED [ 89%]
test/test_subsystem_phi_max.py::test_phi_max[None-mechanism0-0.25] PASSED [ 89%]
test/test_subsystem_phi_max.py::test_phi_max[None-mechanism1-0.5] PASSED [ 89%]
test/test_subsystem_phi_max.py::test_phi_max[None-mechanism2-0.333333] PASSED [ 89%]
test/test_subsystem_phi_max.py::test_phi_max[None-mechanism3-0.5] PASSED [ 90%]
test/test_subsystem_phi_max.py::test_phi_max[cut4-mechanism4-0.0] PASSED [ 90%]
test/test_subsystem_phi_max.py::test_phi_max[cut5-mechanism5-0.5] PASSED [ 90%]
test/test_subsystem_phi_max.py::test_phi_max[cut6-mechanism6-0.0] PASSED [ 90%]
test/test_subsystem_phi_max.py::test_phi_max[cut7-mechanism7-0.0] PASSED [ 90%]
test/test_subsystem_small_phi.py::test_find_mip[CAUSE-subsystem0-None-mechanism0-purview0-expected0] PASSED [ 91%]
test/test_subsystem_small_phi.py::test_find_mip[CAUSE-subsystem1-cut1-mechanism1-purview1-expected1] PASSED [ 91%]
test/test_subsystem_small_phi.py::test_find_mip[EFFECT-subsystem2-None-mechanism2-purview2-expected2] PASSED [ 91%]
test/test_subsystem_small_phi.py::test_find_mip[EFFECT-subsystem3-cut3-mechanism3-purview3-expected3] PASSED [ 91%]
test/test_subsystem_small_phi.py::test_find_mip[EFFECT-subsystem4-cut4-mechanism4-purview4-expected4] PASSED [ 91%]
test/test_subsystem_small_phi.py::test_find_mip[EFFECT-subsystem5-cut5-mechanism5-purview5-expected5] PASSED [ 91%]
test/test_subsystem_small_phi.py::test_find_mip[EFFECT-subsystem6-cut6-mechanism6-purview6-expected6] PASSED [ 92%]
test/test_subsystem_small_phi.py::test_cause_mip PASSED [ 92%]
test/test_subsystem_small_phi.py::test_effect_mip PASSED [ 92%]
test/test_subsystem_small_phi.py::test_phi_cause_mip PASSED [ 92%]
test/test_subsystem_small_phi.py::test_phi_cause_mip_reducible PASSED [ 92%]
test/test_subsystem_small_phi.py::test_phi_effect_mip PASSED [ 92%]
test/test_subsystem_small_phi.py::test_phi_effect_mip_reducible PASSED [ 93%]
test/test_subsystem_small_phi.py::test_phi PASSED [ 93%]
test/test_subsystem_unconstrained_repertoire.py::test_unconstrained_cause_repertoire_matlab_0 PASSED [ 93%]
test/test_subsystem_unconstrained_repertoire.py::test_unconstrained_cause_repertoire_matlab_1 PASSED [ 93%]
test/test_subsystem_unconstrained_repertoire.py::test_unconstrained_cause_repertoire_matlab_2 PASSED [ 93%]
test/test_subsystem_unconstrained_repertoire.py::test_unconstrained_effect_repertoire_matlab_0 PASSED [ 93%]
test/test_subsystem_unconstrained_repertoire.py::test_unconstrained_effect_repertoire_matlab_1 PASSED [ 94%]
test/test_subsystem_unconstrained_repertoire.py::test_unconstrained_effect_repertoire_matlab_2 PASSED [ 94%]
test/test_tpm.py::test_is_state_by_state PASSED [ 94%]
test/test_tpm.py::test_expand_tpm PASSED [ 94%]
test/test_tpm.py::test_marginalize_out PASSED [ 94%]
test/test_tpm.py::test_infer_cm PASSED [ 94%]
test/test_tpm.py::test_reconstitute_tpm PASSED [ 95%]
test/test_utils.py::test_all_states PASSED [ 95%]
test/test_utils.py::test_eq PASSED [ 95%]
test/test_utils.py::test_combs_for_1D_input PASSED [ 95%]
test/test_utils.py::test_combs_r_is_0 PASSED [ 95%]
test/test_utils.py::test_comb_indices PASSED [ 96%]
test/test_utils.py::test_powerset PASSED [ 96%]
test/test_utils.py::test_powerset_takes_iterable PASSED [ 96%]
test/test_utils.py::test_np_hashable PASSED [ 96%]
test/test_utils.py::test_time_annotated PASSED [ 96%]
test/test_validate.py::test_validate_direction PASSED [ 96%]
test/test_validate.py::test_validate_tpm_wrong_shape PASSED [ 97%]
test/test_validate.py::test_validate_tpm_nonbinary_nodes PASSED [ 97%]
test/test_validate.py::test_validate_tpm_conditional_independence PASSED [ 97%]
test/test_validate.py::test_validate_connectivity_matrix_valid PASSED [ 97%]
test/test_validate.py::test_validate_connectivity_matrix_not_square PASSED [ 97%]
test/test_validate.py::test_validate_connectivity_matrix_not_2D PASSED [ 97%]
test/test_validate.py::test_validate_connectivity_matrix_not_binary PASSED [ 98%]
test/test_validate.py::test_validate_network_wrong_cm_size PASSED [ 98%]
test/test_validate.py::test_validate_is_network PASSED [ 98%]
test/test_validate.py::test_validate_state_no_error_1 PASSED [ 98%]
test/test_validate.py::test_validate_state_error PASSED [ 98%]
test/test_validate.py::test_validate_state_no_error_2 PASSED [ 98%]
test/test_validate.py::test_validate_node_labels PASSED [ 99%]
test/test_validate.py::test_validate_time_scale PASSED [ 99%]
test/test_validate.py::test_validate_coarse_grain PASSED [ 99%]
test/test_validate.py::test_validate_blackbox PASSED [ 99%]
test/test_validate.py::test_validate_partition PASSED [ 99%]
test/test_validate.py::test_validate_blackbox_and_coarsegrain PASSED [100%]
=============================== warnings summary ===============================
test/test_models.py::test_numpy_aware_eq_nparray
/usr/lib64/python3.11/site-packages/numpy/core/numeric.py:2457: VisibleDeprecationWarning: Creating an ndarray from ragged nested sequences (which is a list-or-tuple of lists-or-tuples-or ndarrays with different lengths or shapes) is deprecated. If you meant to do this, you must specify 'dtype=object' when creating the ndarray.
a1, a2 = asarray(a1), asarray(a2)
-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
============================= slowest 5 durations ==============================
14.52s call docs/examples/emergence.rst::emergence.rst
9.20s call docs/examples/2014paper.rst::2014paper.rst
4.75s call test/test_macro_blackbox.py::test_soup
4.53s call test/test_macro_blackbox.py::test_degenerate
2.24s call test/test_macro_subsystem.py::test_cut_mechanisms
============ 554 passed, 21 skipped, 3 xfailed, 1 warning in 52.41s ============
+ RPM_EC=0
++ jobs -p
+ exit 0
Processing files: python3-pyphi-1.2.1-6.fc38.noarch
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.kYEnQs
+ umask 022
+ cd /builddir/build/BUILD
+ cd pyphi-1.2.1
+ DOCDIR=/builddir/build/BUILDROOT/python-pyphi-1.2.1-6.fc38.x86_64/usr/share/doc/python3-pyphi
+ export LC_ALL=C
+ LC_ALL=C
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/python-pyphi-1.2.1-6.fc38.x86_64/usr/share/doc/python3-pyphi
+ cp -pr README.md /builddir/build/BUILDROOT/python-pyphi-1.2.1-6.fc38.x86_64/usr/share/doc/python3-pyphi
+ cp -pr CHANGELOG.md /builddir/build/BUILDROOT/python-pyphi-1.2.1-6.fc38.x86_64/usr/share/doc/python3-pyphi
+ cp -pr CACHING.rst /builddir/build/BUILDROOT/python-pyphi-1.2.1-6.fc38.x86_64/usr/share/doc/python3-pyphi
+ cp -pr redis.conf /builddir/build/BUILDROOT/python-pyphi-1.2.1-6.fc38.x86_64/usr/share/doc/python3-pyphi
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: python-pyphi = 1.2.1-6.fc38 python3-pyphi = 1.2.1-6.fc38 python3.11-pyphi = 1.2.1-6.fc38 python3.11dist(pyphi) = 1.2.1 python3dist(pyphi) = 1.2.1
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: python(abi) = 3.11 python3.11dist(decorator) >= 4 python3.11dist(joblib) >= 0.8 python3.11dist(numpy) >= 1.11 python3.11dist(psutil) >= 2.1.1 python3.11dist(pyemd) >= 0.3 python3.11dist(pymongo) >= 2.7.1 python3.11dist(pyyaml) >= 3.13 python3.11dist(redis) >= 2.10.5 python3.11dist(scipy) >= 0.13.3 python3.11dist(tblib) >= 1.3.2 python3.11dist(tqdm) >= 4.20
Processing files: python-pyphi-doc-1.2.1-6.fc38.noarch
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.S6dPuS
+ umask 022
+ cd /builddir/build/BUILD
+ cd pyphi-1.2.1
+ DOCDIR=/builddir/build/BUILDROOT/python-pyphi-1.2.1-6.fc38.x86_64/usr/share/doc/python-pyphi-doc
+ export LC_ALL=C
+ LC_ALL=C
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/python-pyphi-1.2.1-6.fc38.x86_64/usr/share/doc/python-pyphi-doc
+ cp -pr docs/_build/html/ /builddir/build/BUILDROOT/python-pyphi-1.2.1-6.fc38.x86_64/usr/share/doc/python-pyphi-doc
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.Z3CL2n
+ umask 022
+ cd /builddir/build/BUILD
+ cd pyphi-1.2.1
+ LICENSEDIR=/builddir/build/BUILDROOT/python-pyphi-1.2.1-6.fc38.x86_64/usr/share/licenses/python-pyphi-doc
+ export LC_ALL=C
+ LC_ALL=C
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/python-pyphi-1.2.1-6.fc38.x86_64/usr/share/licenses/python-pyphi-doc
+ cp -pr LICENSE.md /builddir/build/BUILDROOT/python-pyphi-1.2.1-6.fc38.x86_64/usr/share/licenses/python-pyphi-doc
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: python-pyphi-doc = 1.2.1-6.fc38
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/python-pyphi-1.2.1-6.fc38.x86_64
Wrote: /builddir/build/SRPMS/python-pyphi-1.2.1-6.fc38.src.rpm
Wrote: /builddir/build/RPMS/python-pyphi-doc-1.2.1-6.fc38.noarch.rpm
Wrote: /builddir/build/RPMS/python3-pyphi-1.2.1-6.fc38.noarch.rpm
Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.Qk9G0C
+ umask 022
+ cd /builddir/build/BUILD
+ cd pyphi-1.2.1
+ /usr/bin/rm -rf /builddir/build/BUILDROOT/python-pyphi-1.2.1-6.fc38.x86_64
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.y2RpKQ
+ umask 022
+ cd /builddir/build/BUILD
+ rm -rf pyphi-1.2.1 pyphi-1.2.1.gemspec
+ RPM_EC=0
++ jobs -p
+ exit 0
Child return code was: 0