Mock Version: 3.5 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/libsonata.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1674274013.370866/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.073pjquq:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.073pjquq:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'd4d2686401214063ae00ba7aa12e3276', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1674274013.370866/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.073pjquq:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/libsonata.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1674086400 Wrote: /builddir/build/SRPMS/libsonata-0.1.11-9.fc38.src.rpm Child return code was: 0 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/libsonata.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1674274013.370866/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.073pjquq:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.073pjquq:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '1bccc89d72d6490db445530cc899085f', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1674274013.370866/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.073pjquq:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/libsonata.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1674086400 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.w4IVFK + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf libsonata-0.1.11 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/libsonata-0.1.11.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd libsonata-0.1.11 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + /usr/bin/git init -q + /usr/bin/git config user.name rpm-build + /usr/bin/git config user.email '' + /usr/bin/git config gc.auto 0 + /usr/bin/git add --force . + /usr/bin/git commit -q --allow-empty -a --author 'rpm-build ' -m 'libsonata-0.1.11 base' + /usr/bin/git checkout --track -b rpm-build Switched to a new branch 'rpm-build' branch 'rpm-build' set up to track 'master'. + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0001-include-catch-cmake.patch + /usr/bin/git apply --index --reject - Checking patch tests/CMakeLists.txt... Applied patch tests/CMakeLists.txt cleanly. + /usr/bin/git commit -q -m 0001-include-catch-cmake.patch --author 'rpm-build ' + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0002-use-cpp-17-filesystem.patch + /usr/bin/git apply --index --reject - Checking patch CMakeLists.txt... Checking patch src/config.cpp... Applied patch CMakeLists.txt cleanly. Applied patch src/config.cpp cleanly. + /usr/bin/git commit -q -m 0002-use-cpp-17-filesystem.patch --author 'rpm-build ' + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0003-Remove-pybind-redeclarations.patch + /usr/bin/git apply --index --reject - Checking patch python/bindings.cpp... Applied patch python/bindings.cpp cleanly. + /usr/bin/git commit -q -m 0003-Remove-pybind-redeclarations.patch --author 'rpm-build ' + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0004-disable-python-ext-build.patch + /usr/bin/git apply --index --reject - Checking patch setup.py... Applied patch setup.py cleanly. + /usr/bin/git commit -q -m 0004-disable-python-ext-build.patch --author 'rpm-build ' + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0005-set-libdir.patch + /usr/bin/git apply --index --reject - Checking patch CMakeLists.txt... Applied patch CMakeLists.txt cleanly. + /usr/bin/git commit -q -m 0005-set-libdir.patch --author 'rpm-build ' + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0006-fix-assertion-error.patch + /usr/bin/git apply --index --reject - Checking patch CMakeLists.txt... Checking patch include/bbp/sonata/report_reader.h... Checking patch src/report_reader.cpp... Applied patch CMakeLists.txt cleanly. Applied patch include/bbp/sonata/report_reader.h cleanly. Applied patch src/report_reader.cpp cleanly. + /usr/bin/git commit -q -m 0006-fix-assertion-error.patch --author 'rpm-build ' + rm -rf libsonata.egg-info + rm -rf extlib/Catch2 extlib/Highfive extlib/fmt extlib/nlohmann + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.zCDZQt + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd libsonata-0.1.11 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + /usr/bin/cmake -S . -B redhat-linux-build -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -DSONATA_PYTHON=ON -DEXTLIB_FROM_SUBMODULES=OFF -DSONATA_VERSION=0.1.11 -DSONATA_TESTS=ON -DSONATA_CXX_WARNINGS=OFF -- The C compiler identification is GNU 13.0.0 -- The CXX compiler identification is GNU 13.0.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- HIGHFIVE 2.3.1: (Re)Detecting Highfive dependencies (HIGHFIVE_USE_INSTALL_DEPS=NO) -- Found HDF5: /usr/lib64/libhdf5.so (found version "1.12.1") -- Found Boost: /usr/include (found version "1.78.0") found components: system serialization -- Found nlohmann_json: /usr/share/cmake/nlohmann_json/nlohmann_jsonConfig.cmake (found version "3.11.2") -- Found PythonInterp: /usr/bin/python3 (found suitable version "3.11.1", minimum required is "3.6") -- Found PythonLibs: /usr/lib64/libpython3.11.so -- Performing Test HAS_FLTO -- Performing Test HAS_FLTO - Success -- Found pybind11: /usr/include (found version "2.10.3") -- Warning: this does not have an effect - use NO_SYSTEM_FROM_IMPORTED if using imported targets -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_CXX_FLAGS_RELEASE CMAKE_C_FLAGS_RELEASE CMAKE_Fortran_FLAGS_RELEASE CMAKE_INSTALL_DO_STRIP INCLUDE_INSTALL_DIR LIB_SUFFIX SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/libsonata-0.1.11/redhat-linux-build + /usr/bin/cmake --build redhat-linux-build -j2 --verbose /usr/bin/cmake -S/builddir/build/BUILD/libsonata-0.1.11 -B/builddir/build/BUILD/libsonata-0.1.11/redhat-linux-build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/libsonata-0.1.11/redhat-linux-build/CMakeFiles /builddir/build/BUILD/libsonata-0.1.11/redhat-linux-build//CMakeFiles/progress.marks /usr/bin/gmake -f CMakeFiles/Makefile2 all gmake[1]: Entering directory '/builddir/build/BUILD/libsonata-0.1.11/redhat-linux-build' /usr/bin/gmake -f CMakeFiles/sonata_shared.dir/build.make CMakeFiles/sonata_shared.dir/depend /usr/bin/gmake -f CMakeFiles/sonata_static.dir/build.make CMakeFiles/sonata_static.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/libsonata-0.1.11/redhat-linux-build' cd /builddir/build/BUILD/libsonata-0.1.11/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsonata-0.1.11 /builddir/build/BUILD/libsonata-0.1.11 /builddir/build/BUILD/libsonata-0.1.11/redhat-linux-build /builddir/build/BUILD/libsonata-0.1.11/redhat-linux-build /builddir/build/BUILD/libsonata-0.1.11/redhat-linux-build/CMakeFiles/sonata_shared.dir/DependInfo.cmake --color= gmake[2]: Entering directory '/builddir/build/BUILD/libsonata-0.1.11/redhat-linux-build' cd /builddir/build/BUILD/libsonata-0.1.11/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsonata-0.1.11 /builddir/build/BUILD/libsonata-0.1.11 /builddir/build/BUILD/libsonata-0.1.11/redhat-linux-build /builddir/build/BUILD/libsonata-0.1.11/redhat-linux-build /builddir/build/BUILD/libsonata-0.1.11/redhat-linux-build/CMakeFiles/sonata_static.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/libsonata-0.1.11/redhat-linux-build' /usr/bin/gmake -f CMakeFiles/sonata_static.dir/build.make CMakeFiles/sonata_static.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/libsonata-0.1.11/redhat-linux-build' gmake[2]: Leaving directory '/builddir/build/BUILD/libsonata-0.1.11/redhat-linux-build' /usr/bin/gmake -f CMakeFiles/sonata_shared.dir/build.make CMakeFiles/sonata_shared.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/libsonata-0.1.11/redhat-linux-build' [ 2%] Building CXX object CMakeFiles/sonata_static.dir/src/common.cpp.o /usr/bin/g++ -DFMT_HEADER_ONLY=1 -I/builddir/build/BUILD/libsonata-0.1.11/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -std=gnu++17 -MD -MT CMakeFiles/sonata_static.dir/src/common.cpp.o -MF CMakeFiles/sonata_static.dir/src/common.cpp.o.d -o CMakeFiles/sonata_static.dir/src/common.cpp.o -c /builddir/build/BUILD/libsonata-0.1.11/src/common.cpp [ 5%] Building CXX object CMakeFiles/sonata_shared.dir/src/common.cpp.o /usr/bin/g++ -DBOOST_ALL_NO_LIB -DFMT_HEADER_ONLY=1 -DH5_USE_BOOST -DMPI_NO_CPPBIND -DSONATA_DLL -DSONATA_DLL_EXPORTS -Dsonata_shared_EXPORTS -I/builddir/build/BUILD/libsonata-0.1.11/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -std=gnu++17 -MD -MT CMakeFiles/sonata_shared.dir/src/common.cpp.o -MF CMakeFiles/sonata_shared.dir/src/common.cpp.o.d -o CMakeFiles/sonata_shared.dir/src/common.cpp.o -c /builddir/build/BUILD/libsonata-0.1.11/src/common.cpp [ 8%] Building CXX object CMakeFiles/sonata_static.dir/src/config.cpp.o /usr/bin/g++ -DFMT_HEADER_ONLY=1 -I/builddir/build/BUILD/libsonata-0.1.11/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -std=gnu++17 -MD -MT CMakeFiles/sonata_static.dir/src/config.cpp.o -MF CMakeFiles/sonata_static.dir/src/config.cpp.o.d -o CMakeFiles/sonata_static.dir/src/config.cpp.o -c /builddir/build/BUILD/libsonata-0.1.11/src/config.cpp [ 11%] Building CXX object CMakeFiles/sonata_shared.dir/src/config.cpp.o /usr/bin/g++ -DBOOST_ALL_NO_LIB -DFMT_HEADER_ONLY=1 -DH5_USE_BOOST -DMPI_NO_CPPBIND -DSONATA_DLL -DSONATA_DLL_EXPORTS -Dsonata_shared_EXPORTS -I/builddir/build/BUILD/libsonata-0.1.11/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -std=gnu++17 -MD -MT CMakeFiles/sonata_shared.dir/src/config.cpp.o -MF CMakeFiles/sonata_shared.dir/src/config.cpp.o.d -o CMakeFiles/sonata_shared.dir/src/config.cpp.o -c /builddir/build/BUILD/libsonata-0.1.11/src/config.cpp [ 14%] Building CXX object CMakeFiles/sonata_static.dir/src/edge_index.cpp.o /usr/bin/g++ -DFMT_HEADER_ONLY=1 -I/builddir/build/BUILD/libsonata-0.1.11/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -std=gnu++17 -MD -MT CMakeFiles/sonata_static.dir/src/edge_index.cpp.o -MF CMakeFiles/sonata_static.dir/src/edge_index.cpp.o.d -o CMakeFiles/sonata_static.dir/src/edge_index.cpp.o -c /builddir/build/BUILD/libsonata-0.1.11/src/edge_index.cpp [ 17%] Building CXX object CMakeFiles/sonata_shared.dir/src/edge_index.cpp.o /usr/bin/g++ -DBOOST_ALL_NO_LIB -DFMT_HEADER_ONLY=1 -DH5_USE_BOOST -DMPI_NO_CPPBIND -DSONATA_DLL -DSONATA_DLL_EXPORTS -Dsonata_shared_EXPORTS -I/builddir/build/BUILD/libsonata-0.1.11/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -std=gnu++17 -MD -MT CMakeFiles/sonata_shared.dir/src/edge_index.cpp.o -MF CMakeFiles/sonata_shared.dir/src/edge_index.cpp.o.d -o CMakeFiles/sonata_shared.dir/src/edge_index.cpp.o -c /builddir/build/BUILD/libsonata-0.1.11/src/edge_index.cpp [ 20%] Building CXX object CMakeFiles/sonata_static.dir/src/edges.cpp.o /usr/bin/g++ -DFMT_HEADER_ONLY=1 -I/builddir/build/BUILD/libsonata-0.1.11/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -std=gnu++17 -MD -MT CMakeFiles/sonata_static.dir/src/edges.cpp.o -MF CMakeFiles/sonata_static.dir/src/edges.cpp.o.d -o CMakeFiles/sonata_static.dir/src/edges.cpp.o -c /builddir/build/BUILD/libsonata-0.1.11/src/edges.cpp [ 23%] Building CXX object CMakeFiles/sonata_shared.dir/src/edges.cpp.o /usr/bin/g++ -DBOOST_ALL_NO_LIB -DFMT_HEADER_ONLY=1 -DH5_USE_BOOST -DMPI_NO_CPPBIND -DSONATA_DLL -DSONATA_DLL_EXPORTS -Dsonata_shared_EXPORTS -I/builddir/build/BUILD/libsonata-0.1.11/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -std=gnu++17 -MD -MT CMakeFiles/sonata_shared.dir/src/edges.cpp.o -MF CMakeFiles/sonata_shared.dir/src/edges.cpp.o.d -o CMakeFiles/sonata_shared.dir/src/edges.cpp.o -c /builddir/build/BUILD/libsonata-0.1.11/src/edges.cpp [ 26%] Building CXX object CMakeFiles/sonata_static.dir/src/hdf5_mutex.cpp.o /usr/bin/g++ -DFMT_HEADER_ONLY=1 -I/builddir/build/BUILD/libsonata-0.1.11/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -std=gnu++17 -MD -MT CMakeFiles/sonata_static.dir/src/hdf5_mutex.cpp.o -MF CMakeFiles/sonata_static.dir/src/hdf5_mutex.cpp.o.d -o CMakeFiles/sonata_static.dir/src/hdf5_mutex.cpp.o -c /builddir/build/BUILD/libsonata-0.1.11/src/hdf5_mutex.cpp [ 29%] Building CXX object CMakeFiles/sonata_static.dir/src/node_sets.cpp.o /usr/bin/g++ -DFMT_HEADER_ONLY=1 -I/builddir/build/BUILD/libsonata-0.1.11/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -std=gnu++17 -MD -MT CMakeFiles/sonata_static.dir/src/node_sets.cpp.o -MF CMakeFiles/sonata_static.dir/src/node_sets.cpp.o.d -o CMakeFiles/sonata_static.dir/src/node_sets.cpp.o -c /builddir/build/BUILD/libsonata-0.1.11/src/node_sets.cpp /builddir/build/BUILD/libsonata-0.1.11/src/node_sets.cpp: In function 'bbp::sonata::detail::NodeSetRules bbp::sonata::detail::_dispatch_node(const json&)': /builddir/build/BUILD/libsonata-0.1.11/src/node_sets.cpp:418:25: warning: possibly dangling reference to a temporary [-Wdangling-reference] 418 | const auto& key = definition.begin().key(); | ^~~ /builddir/build/BUILD/libsonata-0.1.11/src/node_sets.cpp:418:53: note: the temporary was destroyed at the end of the full expression 'nlohmann::json_abi_v3_11_2::basic_json::begin() const [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::json_abi_v3_11_2::adl_serializer; BinaryType = std::vector; const_iterator = nlohmann::json_abi_v3_11_2::detail::iter_impl >]().nlohmann::json_abi_v3_11_2::detail::iter_impl >::key()' 418 | const auto& key = definition.begin().key(); | ~~~~~~~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/libsonata-0.1.11/src/node_sets.cpp:419:25: warning: possibly dangling reference to a temporary [-Wdangling-reference] 419 | const auto& value = definition.begin().value(); | ^~~~~ /builddir/build/BUILD/libsonata-0.1.11/src/node_sets.cpp:419:57: note: the temporary was destroyed at the end of the full expression 'nlohmann::json_abi_v3_11_2::basic_json::begin() const [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::json_abi_v3_11_2::adl_serializer; BinaryType = std::vector; const_iterator = nlohmann::json_abi_v3_11_2::detail::iter_impl >]().nlohmann::json_abi_v3_11_2::detail::iter_impl >::value()' 419 | const auto& value = definition.begin().value(); | ~~~~~~~~~~~~~~~~~~~~~~~~^~ [ 32%] Building CXX object CMakeFiles/sonata_shared.dir/src/hdf5_mutex.cpp.o /usr/bin/g++ -DBOOST_ALL_NO_LIB -DFMT_HEADER_ONLY=1 -DH5_USE_BOOST -DMPI_NO_CPPBIND -DSONATA_DLL -DSONATA_DLL_EXPORTS -Dsonata_shared_EXPORTS -I/builddir/build/BUILD/libsonata-0.1.11/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -std=gnu++17 -MD -MT CMakeFiles/sonata_shared.dir/src/hdf5_mutex.cpp.o -MF CMakeFiles/sonata_shared.dir/src/hdf5_mutex.cpp.o.d -o CMakeFiles/sonata_shared.dir/src/hdf5_mutex.cpp.o -c /builddir/build/BUILD/libsonata-0.1.11/src/hdf5_mutex.cpp [ 35%] Building CXX object CMakeFiles/sonata_shared.dir/src/node_sets.cpp.o /usr/bin/g++ -DBOOST_ALL_NO_LIB -DFMT_HEADER_ONLY=1 -DH5_USE_BOOST -DMPI_NO_CPPBIND -DSONATA_DLL -DSONATA_DLL_EXPORTS -Dsonata_shared_EXPORTS -I/builddir/build/BUILD/libsonata-0.1.11/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -std=gnu++17 -MD -MT CMakeFiles/sonata_shared.dir/src/node_sets.cpp.o -MF CMakeFiles/sonata_shared.dir/src/node_sets.cpp.o.d -o CMakeFiles/sonata_shared.dir/src/node_sets.cpp.o -c /builddir/build/BUILD/libsonata-0.1.11/src/node_sets.cpp /builddir/build/BUILD/libsonata-0.1.11/src/node_sets.cpp: In function 'bbp::sonata::detail::NodeSetRules bbp::sonata::detail::_dispatch_node(const json&)': /builddir/build/BUILD/libsonata-0.1.11/src/node_sets.cpp:418:25: warning: possibly dangling reference to a temporary [-Wdangling-reference] 418 | const auto& key = definition.begin().key(); | ^~~ /builddir/build/BUILD/libsonata-0.1.11/src/node_sets.cpp:418:53: note: the temporary was destroyed at the end of the full expression 'nlohmann::json_abi_v3_11_2::basic_json::begin() const [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::json_abi_v3_11_2::adl_serializer; BinaryType = std::vector; const_iterator = nlohmann::json_abi_v3_11_2::detail::iter_impl >]().nlohmann::json_abi_v3_11_2::detail::iter_impl >::key()' 418 | const auto& key = definition.begin().key(); | ~~~~~~~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/libsonata-0.1.11/src/node_sets.cpp:419:25: warning: possibly dangling reference to a temporary [-Wdangling-reference] 419 | const auto& value = definition.begin().value(); | ^~~~~ /builddir/build/BUILD/libsonata-0.1.11/src/node_sets.cpp:419:57: note: the temporary was destroyed at the end of the full expression 'nlohmann::json_abi_v3_11_2::basic_json::begin() const [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::json_abi_v3_11_2::adl_serializer; BinaryType = std::vector; const_iterator = nlohmann::json_abi_v3_11_2::detail::iter_impl >]().nlohmann::json_abi_v3_11_2::detail::iter_impl >::value()' 419 | const auto& value = definition.begin().value(); | ~~~~~~~~~~~~~~~~~~~~~~~~^~ [ 38%] Building CXX object CMakeFiles/sonata_static.dir/src/nodes.cpp.o /usr/bin/g++ -DFMT_HEADER_ONLY=1 -I/builddir/build/BUILD/libsonata-0.1.11/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -std=gnu++17 -MD -MT CMakeFiles/sonata_static.dir/src/nodes.cpp.o -MF CMakeFiles/sonata_static.dir/src/nodes.cpp.o.d -o CMakeFiles/sonata_static.dir/src/nodes.cpp.o -c /builddir/build/BUILD/libsonata-0.1.11/src/nodes.cpp [ 41%] Building CXX object CMakeFiles/sonata_shared.dir/src/nodes.cpp.o /usr/bin/g++ -DBOOST_ALL_NO_LIB -DFMT_HEADER_ONLY=1 -DH5_USE_BOOST -DMPI_NO_CPPBIND -DSONATA_DLL -DSONATA_DLL_EXPORTS -Dsonata_shared_EXPORTS -I/builddir/build/BUILD/libsonata-0.1.11/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -std=gnu++17 -MD -MT CMakeFiles/sonata_shared.dir/src/nodes.cpp.o -MF CMakeFiles/sonata_shared.dir/src/nodes.cpp.o.d -o CMakeFiles/sonata_shared.dir/src/nodes.cpp.o -c /builddir/build/BUILD/libsonata-0.1.11/src/nodes.cpp [ 44%] Building CXX object CMakeFiles/sonata_static.dir/src/population.cpp.o /usr/bin/g++ -DFMT_HEADER_ONLY=1 -I/builddir/build/BUILD/libsonata-0.1.11/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -std=gnu++17 -MD -MT CMakeFiles/sonata_static.dir/src/population.cpp.o -MF CMakeFiles/sonata_static.dir/src/population.cpp.o.d -o CMakeFiles/sonata_static.dir/src/population.cpp.o -c /builddir/build/BUILD/libsonata-0.1.11/src/population.cpp [ 47%] Building CXX object CMakeFiles/sonata_shared.dir/src/population.cpp.o /usr/bin/g++ -DBOOST_ALL_NO_LIB -DFMT_HEADER_ONLY=1 -DH5_USE_BOOST -DMPI_NO_CPPBIND -DSONATA_DLL -DSONATA_DLL_EXPORTS -Dsonata_shared_EXPORTS -I/builddir/build/BUILD/libsonata-0.1.11/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -std=gnu++17 -MD -MT CMakeFiles/sonata_shared.dir/src/population.cpp.o -MF CMakeFiles/sonata_shared.dir/src/population.cpp.o.d -o CMakeFiles/sonata_shared.dir/src/population.cpp.o -c /builddir/build/BUILD/libsonata-0.1.11/src/population.cpp [ 50%] Building CXX object CMakeFiles/sonata_static.dir/src/report_reader.cpp.o /usr/bin/g++ -DFMT_HEADER_ONLY=1 -I/builddir/build/BUILD/libsonata-0.1.11/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -std=gnu++17 -MD -MT CMakeFiles/sonata_static.dir/src/report_reader.cpp.o -MF CMakeFiles/sonata_static.dir/src/report_reader.cpp.o.d -o CMakeFiles/sonata_static.dir/src/report_reader.cpp.o -c /builddir/build/BUILD/libsonata-0.1.11/src/report_reader.cpp [ 52%] Building CXX object CMakeFiles/sonata_shared.dir/src/report_reader.cpp.o /usr/bin/g++ -DBOOST_ALL_NO_LIB -DFMT_HEADER_ONLY=1 -DH5_USE_BOOST -DMPI_NO_CPPBIND -DSONATA_DLL -DSONATA_DLL_EXPORTS -Dsonata_shared_EXPORTS -I/builddir/build/BUILD/libsonata-0.1.11/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -std=gnu++17 -MD -MT CMakeFiles/sonata_shared.dir/src/report_reader.cpp.o -MF CMakeFiles/sonata_shared.dir/src/report_reader.cpp.o.d -o CMakeFiles/sonata_shared.dir/src/report_reader.cpp.o -c /builddir/build/BUILD/libsonata-0.1.11/src/report_reader.cpp [ 55%] Building CXX object CMakeFiles/sonata_static.dir/src/utils.cpp.o /usr/bin/g++ -DFMT_HEADER_ONLY=1 -I/builddir/build/BUILD/libsonata-0.1.11/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -std=gnu++17 -MD -MT CMakeFiles/sonata_static.dir/src/utils.cpp.o -MF CMakeFiles/sonata_static.dir/src/utils.cpp.o.d -o CMakeFiles/sonata_static.dir/src/utils.cpp.o -c /builddir/build/BUILD/libsonata-0.1.11/src/utils.cpp [ 58%] Building CXX object CMakeFiles/sonata_static.dir/src/version.cpp.o /usr/bin/g++ -DFMT_HEADER_ONLY=1 -I/builddir/build/BUILD/libsonata-0.1.11/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -std=gnu++17 -MD -MT CMakeFiles/sonata_static.dir/src/version.cpp.o -MF CMakeFiles/sonata_static.dir/src/version.cpp.o.d -o CMakeFiles/sonata_static.dir/src/version.cpp.o -c /builddir/build/BUILD/libsonata-0.1.11/redhat-linux-build/src/version.cpp [ 61%] Linking CXX static library libsonata.a /usr/bin/cmake -P CMakeFiles/sonata_static.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/sonata_static.dir/link.txt --verbose=1 /usr/bin/ar qc libsonata.a CMakeFiles/sonata_static.dir/src/common.cpp.o CMakeFiles/sonata_static.dir/src/config.cpp.o CMakeFiles/sonata_static.dir/src/edge_index.cpp.o CMakeFiles/sonata_static.dir/src/edges.cpp.o CMakeFiles/sonata_static.dir/src/hdf5_mutex.cpp.o CMakeFiles/sonata_static.dir/src/node_sets.cpp.o CMakeFiles/sonata_static.dir/src/nodes.cpp.o CMakeFiles/sonata_static.dir/src/population.cpp.o CMakeFiles/sonata_static.dir/src/report_reader.cpp.o CMakeFiles/sonata_static.dir/src/utils.cpp.o CMakeFiles/sonata_static.dir/src/version.cpp.o /usr/bin/ranlib libsonata.a gmake[2]: Leaving directory '/builddir/build/BUILD/libsonata-0.1.11/redhat-linux-build' [ 61%] Built target sonata_static /usr/bin/gmake -f python/CMakeFiles/sonata_python.dir/build.make python/CMakeFiles/sonata_python.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/libsonata-0.1.11/redhat-linux-build' cd /builddir/build/BUILD/libsonata-0.1.11/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsonata-0.1.11 /builddir/build/BUILD/libsonata-0.1.11/python /builddir/build/BUILD/libsonata-0.1.11/redhat-linux-build /builddir/build/BUILD/libsonata-0.1.11/redhat-linux-build/python /builddir/build/BUILD/libsonata-0.1.11/redhat-linux-build/python/CMakeFiles/sonata_python.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/libsonata-0.1.11/redhat-linux-build' /usr/bin/gmake -f python/CMakeFiles/sonata_python.dir/build.make python/CMakeFiles/sonata_python.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/libsonata-0.1.11/redhat-linux-build' [ 64%] Building CXX object python/CMakeFiles/sonata_python.dir/bindings.cpp.o cd /builddir/build/BUILD/libsonata-0.1.11/redhat-linux-build/python && /usr/bin/g++ -DBOOST_ALL_NO_LIB -DFMT_HEADER_ONLY=1 -DH5_USE_BOOST -DMPI_NO_CPPBIND -Dsonata_python_EXPORTS -I/builddir/build/BUILD/libsonata-0.1.11/include -isystem /usr/include/python3.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -std=gnu++17 -MD -MT python/CMakeFiles/sonata_python.dir/bindings.cpp.o -MF CMakeFiles/sonata_python.dir/bindings.cpp.o.d -o CMakeFiles/sonata_python.dir/bindings.cpp.o -c /builddir/build/BUILD/libsonata-0.1.11/python/bindings.cpp /builddir/build/BUILD/libsonata-0.1.11/python/bindings.cpp: In lambda function: /builddir/build/BUILD/libsonata-0.1.11/python/bindings.cpp:417:39: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'pybind11::ssize_t' {aka 'long int'} [-Wsign-compare] 417 | for (size_t i = 0; i < raw.shape(0); ++i) { | ~~^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libsonata-0.1.11/include/bbp/sonata/edges.h:13, from /builddir/build/BUILD/libsonata-0.1.11/include/bbp/sonata/config.h:20, from /builddir/build/BUILD/libsonata-0.1.11/python/bindings.cpp:6: /builddir/build/BUILD/libsonata-0.1.11/include/bbp/sonata/population.h: In instantiation of 'static bbp::sonata::Selection bbp::sonata::Selection::fromValues(Iterator, Iterator) [with Iterator = const long int*]': /builddir/build/BUILD/libsonata-0.1.11/python/bindings.cpp:423:46: required from here /builddir/build/BUILD/libsonata-0.1.11/include/bbp/sonata/population.h:77:15: warning: comparison of integer expressions of different signedness: 'const long int' and 'long unsigned int' [-Wsign-compare] 77 | if (v == range.second) { | ~~^~~~~~~~~~~~~~~ [ 67%] Building CXX object CMakeFiles/sonata_shared.dir/src/utils.cpp.o /usr/bin/g++ -DBOOST_ALL_NO_LIB -DFMT_HEADER_ONLY=1 -DH5_USE_BOOST -DMPI_NO_CPPBIND -DSONATA_DLL -DSONATA_DLL_EXPORTS -Dsonata_shared_EXPORTS -I/builddir/build/BUILD/libsonata-0.1.11/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -std=gnu++17 -MD -MT CMakeFiles/sonata_shared.dir/src/utils.cpp.o -MF CMakeFiles/sonata_shared.dir/src/utils.cpp.o.d -o CMakeFiles/sonata_shared.dir/src/utils.cpp.o -c /builddir/build/BUILD/libsonata-0.1.11/src/utils.cpp [ 70%] Building CXX object CMakeFiles/sonata_shared.dir/src/version.cpp.o /usr/bin/g++ -DBOOST_ALL_NO_LIB -DFMT_HEADER_ONLY=1 -DH5_USE_BOOST -DMPI_NO_CPPBIND -DSONATA_DLL -DSONATA_DLL_EXPORTS -Dsonata_shared_EXPORTS -I/builddir/build/BUILD/libsonata-0.1.11/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -std=gnu++17 -MD -MT CMakeFiles/sonata_shared.dir/src/version.cpp.o -MF CMakeFiles/sonata_shared.dir/src/version.cpp.o.d -o CMakeFiles/sonata_shared.dir/src/version.cpp.o -c /builddir/build/BUILD/libsonata-0.1.11/redhat-linux-build/src/version.cpp [ 73%] Linking CXX shared library libsonata.so /usr/bin/cmake -E cmake_link_script CMakeFiles/sonata_shared.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libsonata.so.0.1 -o libsonata.so.0.1.11 CMakeFiles/sonata_shared.dir/src/common.cpp.o CMakeFiles/sonata_shared.dir/src/config.cpp.o CMakeFiles/sonata_shared.dir/src/edge_index.cpp.o CMakeFiles/sonata_shared.dir/src/edges.cpp.o CMakeFiles/sonata_shared.dir/src/hdf5_mutex.cpp.o CMakeFiles/sonata_shared.dir/src/node_sets.cpp.o CMakeFiles/sonata_shared.dir/src/nodes.cpp.o CMakeFiles/sonata_shared.dir/src/population.cpp.o CMakeFiles/sonata_shared.dir/src/report_reader.cpp.o CMakeFiles/sonata_shared.dir/src/utils.cpp.o CMakeFiles/sonata_shared.dir/src/version.cpp.o /usr/lib64/libhdf5.so [ 76%] Linking CXX shared module _libsonata.cpython-311-x86_64-linux-gnu.so cd /builddir/build/BUILD/libsonata-0.1.11/redhat-linux-build/python && /usr/bin/cmake -E cmake_link_script CMakeFiles/sonata_python.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -flto -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o _libsonata.cpython-311-x86_64-linux-gnu.so CMakeFiles/sonata_python.dir/bindings.cpp.o ../libsonata.a /usr/lib64/libhdf5.so /usr/bin/cmake -E cmake_symlink_library libsonata.so.0.1.11 libsonata.so.0.1 libsonata.so gmake[2]: Leaving directory '/builddir/build/BUILD/libsonata-0.1.11/redhat-linux-build' [ 76%] Built target sonata_shared /usr/bin/gmake -f tests/CMakeFiles/unittests.dir/build.make tests/CMakeFiles/unittests.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/libsonata-0.1.11/redhat-linux-build' cd /builddir/build/BUILD/libsonata-0.1.11/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsonata-0.1.11 /builddir/build/BUILD/libsonata-0.1.11/tests /builddir/build/BUILD/libsonata-0.1.11/redhat-linux-build /builddir/build/BUILD/libsonata-0.1.11/redhat-linux-build/tests /builddir/build/BUILD/libsonata-0.1.11/redhat-linux-build/tests/CMakeFiles/unittests.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/builddir/build/BUILD/libsonata-0.1.11/redhat-linux-build' /usr/bin/gmake -f tests/CMakeFiles/unittests.dir/build.make tests/CMakeFiles/unittests.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/libsonata-0.1.11/redhat-linux-build' [ 79%] Building CXX object tests/CMakeFiles/unittests.dir/main.cpp.o cd /builddir/build/BUILD/libsonata-0.1.11/redhat-linux-build/tests && /usr/bin/g++ -DBOOST_ALL_NO_LIB -DH5_USE_BOOST -DMPI_NO_CPPBIND -DSONATA_DLL -I/builddir/build/BUILD/libsonata-0.1.11/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -MD -MT tests/CMakeFiles/unittests.dir/main.cpp.o -MF CMakeFiles/unittests.dir/main.cpp.o.d -o CMakeFiles/unittests.dir/main.cpp.o -c /builddir/build/BUILD/libsonata-0.1.11/tests/main.cpp cd /builddir/build/BUILD/libsonata-0.1.11/redhat-linux-build/python && /usr/bin/strip /builddir/build/BUILD/libsonata-0.1.11/redhat-linux-build/python/_libsonata.cpython-311-x86_64-linux-gnu.so gmake[2]: Leaving directory '/builddir/build/BUILD/libsonata-0.1.11/redhat-linux-build' [ 79%] Built target sonata_python [ 82%] Building CXX object tests/CMakeFiles/unittests.dir/test_config.cpp.o cd /builddir/build/BUILD/libsonata-0.1.11/redhat-linux-build/tests && /usr/bin/g++ -DBOOST_ALL_NO_LIB -DH5_USE_BOOST -DMPI_NO_CPPBIND -DSONATA_DLL -I/builddir/build/BUILD/libsonata-0.1.11/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -MD -MT tests/CMakeFiles/unittests.dir/test_config.cpp.o -MF CMakeFiles/unittests.dir/test_config.cpp.o.d -o CMakeFiles/unittests.dir/test_config.cpp.o -c /builddir/build/BUILD/libsonata-0.1.11/tests/test_config.cpp [ 85%] Building CXX object tests/CMakeFiles/unittests.dir/test_edges.cpp.o cd /builddir/build/BUILD/libsonata-0.1.11/redhat-linux-build/tests && /usr/bin/g++ -DBOOST_ALL_NO_LIB -DH5_USE_BOOST -DMPI_NO_CPPBIND -DSONATA_DLL -I/builddir/build/BUILD/libsonata-0.1.11/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -MD -MT tests/CMakeFiles/unittests.dir/test_edges.cpp.o -MF CMakeFiles/unittests.dir/test_edges.cpp.o.d -o CMakeFiles/unittests.dir/test_edges.cpp.o -c /builddir/build/BUILD/libsonata-0.1.11/tests/test_edges.cpp [ 88%] Building CXX object tests/CMakeFiles/unittests.dir/test_node_sets.cpp.o cd /builddir/build/BUILD/libsonata-0.1.11/redhat-linux-build/tests && /usr/bin/g++ -DBOOST_ALL_NO_LIB -DH5_USE_BOOST -DMPI_NO_CPPBIND -DSONATA_DLL -I/builddir/build/BUILD/libsonata-0.1.11/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -MD -MT tests/CMakeFiles/unittests.dir/test_node_sets.cpp.o -MF CMakeFiles/unittests.dir/test_node_sets.cpp.o.d -o CMakeFiles/unittests.dir/test_node_sets.cpp.o -c /builddir/build/BUILD/libsonata-0.1.11/tests/test_node_sets.cpp [ 91%] Building CXX object tests/CMakeFiles/unittests.dir/test_nodes.cpp.o cd /builddir/build/BUILD/libsonata-0.1.11/redhat-linux-build/tests && /usr/bin/g++ -DBOOST_ALL_NO_LIB -DH5_USE_BOOST -DMPI_NO_CPPBIND -DSONATA_DLL -I/builddir/build/BUILD/libsonata-0.1.11/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -MD -MT tests/CMakeFiles/unittests.dir/test_nodes.cpp.o -MF CMakeFiles/unittests.dir/test_nodes.cpp.o.d -o CMakeFiles/unittests.dir/test_nodes.cpp.o -c /builddir/build/BUILD/libsonata-0.1.11/tests/test_nodes.cpp [ 94%] Building CXX object tests/CMakeFiles/unittests.dir/test_report_reader.cpp.o cd /builddir/build/BUILD/libsonata-0.1.11/redhat-linux-build/tests && /usr/bin/g++ -DBOOST_ALL_NO_LIB -DH5_USE_BOOST -DMPI_NO_CPPBIND -DSONATA_DLL -I/builddir/build/BUILD/libsonata-0.1.11/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -MD -MT tests/CMakeFiles/unittests.dir/test_report_reader.cpp.o -MF CMakeFiles/unittests.dir/test_report_reader.cpp.o.d -o CMakeFiles/unittests.dir/test_report_reader.cpp.o -c /builddir/build/BUILD/libsonata-0.1.11/tests/test_report_reader.cpp In file included from /builddir/build/BUILD/libsonata-0.1.11/tests/test_report_reader.cpp:1: /builddir/build/BUILD/libsonata-0.1.11/tests/test_report_reader.cpp: In function 'void testTimes(const std::vector&, double, double, int)': /builddir/build/BUILD/libsonata-0.1.11/tests/test_report_reader.cpp:8:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 8 | REQUIRE(size == vec.size()); | ~~~~~^~~~~~~~~~~~~ /builddir/build/BUILD/libsonata-0.1.11/tests/test_report_reader.cpp:9:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 9 | for (int i = 0; i < vec.size(); ++i) { | ~~^~~~~~~~~~~~ [ 97%] Building CXX object tests/CMakeFiles/unittests.dir/test_selection.cpp.o cd /builddir/build/BUILD/libsonata-0.1.11/redhat-linux-build/tests && /usr/bin/g++ -DBOOST_ALL_NO_LIB -DH5_USE_BOOST -DMPI_NO_CPPBIND -DSONATA_DLL -I/builddir/build/BUILD/libsonata-0.1.11/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -MD -MT tests/CMakeFiles/unittests.dir/test_selection.cpp.o -MF CMakeFiles/unittests.dir/test_selection.cpp.o.d -o CMakeFiles/unittests.dir/test_selection.cpp.o -c /builddir/build/BUILD/libsonata-0.1.11/tests/test_selection.cpp [100%] Linking CXX executable unittests cd /builddir/build/BUILD/libsonata-0.1.11/redhat-linux-build/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unittests.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -rdynamic CMakeFiles/unittests.dir/main.cpp.o CMakeFiles/unittests.dir/test_config.cpp.o CMakeFiles/unittests.dir/test_edges.cpp.o CMakeFiles/unittests.dir/test_node_sets.cpp.o CMakeFiles/unittests.dir/test_nodes.cpp.o CMakeFiles/unittests.dir/test_report_reader.cpp.o CMakeFiles/unittests.dir/test_selection.cpp.o -o unittests -Wl,-rpath,/builddir/build/BUILD/libsonata-0.1.11/redhat-linux-build ../libsonata.so.0.1.11 /usr/lib64/libhdf5.so cd /builddir/build/BUILD/libsonata-0.1.11/redhat-linux-build/tests && /usr/bin/cmake -D TEST_TARGET=unittests -D TEST_EXECUTABLE=/builddir/build/BUILD/libsonata-0.1.11/redhat-linux-build/tests/unittests -D TEST_EXECUTOR= -D TEST_WORKING_DIR=/builddir/build/BUILD/libsonata-0.1.11/tests -D TEST_SPEC= -D TEST_EXTRA_ARGS= -D TEST_PROPERTIES= -D TEST_PREFIX= -D TEST_SUFFIX= -D TEST_LIST=unittests_TESTS -D TEST_REPORTER= -D TEST_OUTPUT_DIR= -D TEST_OUTPUT_PREFIX= -D TEST_OUTPUT_SUFFIX= -D CTEST_FILE=/builddir/build/BUILD/libsonata-0.1.11/redhat-linux-build/tests/unittests_tests-b12d07c.cmake -P /usr/lib64/cmake/Catch2/CatchAddTests.cmake gmake[2]: Leaving directory '/builddir/build/BUILD/libsonata-0.1.11/redhat-linux-build' [100%] Built target unittests gmake[1]: Leaving directory '/builddir/build/BUILD/libsonata-0.1.11/redhat-linux-build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/libsonata-0.1.11/redhat-linux-build/CMakeFiles 0 + export SETUPTOOLS_SCM_PRETEND_VERSION=0.1.11 + SETUPTOOLS_SCM_PRETEND_VERSION=0.1.11 + cp -a README.rst redhat-linux-build + cp -a setup.py redhat-linux-build + cp -a pyproject.toml redhat-linux-build + cp -a COPYING.LESSER redhat-linux-build + cp -a MANIFEST.in redhat-linux-build + mkdir -p redhat-linux-build/python/libsonata/ + cp -a python/libsonata/__init__.py redhat-linux-build/python/libsonata + pushd redhat-linux-build ~/build/BUILD/libsonata-0.1.11/redhat-linux-build ~/build/BUILD/libsonata-0.1.11 + mkdir -p /builddir/build/BUILD/libsonata-0.1.11/.pyproject-builddir + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes' + TMPDIR=/builddir/build/BUILD/libsonata-0.1.11/.pyproject-builddir + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_wheel.py /builddir/build/BUILD/libsonata-0.1.11/pyproject-wheeldir Processing /builddir/build/BUILD/libsonata-0.1.11/redhat-linux-build Preparing metadata (pyproject.toml): started Running command Preparing metadata (pyproject.toml) running dist_info creating /builddir/build/BUILD/libsonata-0.1.11/.pyproject-builddir/pip-modern-metadata-03j00lc0/libsonata.egg-info writing /builddir/build/BUILD/libsonata-0.1.11/.pyproject-builddir/pip-modern-metadata-03j00lc0/libsonata.egg-info/PKG-INFO writing dependency_links to /builddir/build/BUILD/libsonata-0.1.11/.pyproject-builddir/pip-modern-metadata-03j00lc0/libsonata.egg-info/dependency_links.txt writing requirements to /builddir/build/BUILD/libsonata-0.1.11/.pyproject-builddir/pip-modern-metadata-03j00lc0/libsonata.egg-info/requires.txt writing top-level names to /builddir/build/BUILD/libsonata-0.1.11/.pyproject-builddir/pip-modern-metadata-03j00lc0/libsonata.egg-info/top_level.txt writing manifest file '/builddir/build/BUILD/libsonata-0.1.11/.pyproject-builddir/pip-modern-metadata-03j00lc0/libsonata.egg-info/SOURCES.txt' reading manifest file '/builddir/build/BUILD/libsonata-0.1.11/.pyproject-builddir/pip-modern-metadata-03j00lc0/libsonata.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*' under directory 'include' warning: no files found matching 'CMakeLists.txt' warning: no files found matching 'extlib/CMakeLists.txt' warning: no files found matching 'extlib/nlohmann/json.hpp' warning: no files found matching '*' under directory 'extlib/fmt/include' warning: no files found matching '*' under directory 'extlib/fmt/src' warning: no files found matching '*.cmake' under directory 'extlib/fmt/support/cmake' warning: no files found matching 'extlib/fmt/CMakeLists.txt' warning: no files found matching 'extlib/fmt/*.rst' warning: no files found matching '*' under directory 'extlib/HighFive/include' warning: no files found matching 'extlib/HighFive/CMakeLists.txt' warning: no files found matching 'extlib/HighFive/LICENSE' warning: no files found matching 'extlib/filesystem.hpp' warning: no files found matching '*' under directory 'python/pybind11/include' warning: no files found matching '*.cmake' under directory 'python/pybind11/tools' warning: no files found matching 'python/pybind11/CMakeLists.txt' warning: no files found matching 'python/pybind11/LICENSE' adding license file 'COPYING.LESSER' writing manifest file '/builddir/build/BUILD/libsonata-0.1.11/.pyproject-builddir/pip-modern-metadata-03j00lc0/libsonata.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/libsonata-0.1.11/.pyproject-builddir/pip-modern-metadata-03j00lc0/libsonata-0.1.11.dist-info' Preparing metadata (pyproject.toml): finished with status 'done' Building wheels for collected packages: libsonata Building wheel for libsonata (pyproject.toml): started Running command Building wheel for libsonata (pyproject.toml) running bdist_wheel running build running build_py creating build creating build/lib.linux-x86_64-cpython-311 creating build/lib.linux-x86_64-cpython-311/libsonata copying python/libsonata/__init__.py -> build/lib.linux-x86_64-cpython-311/libsonata running build_ext installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64 creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/libsonata copying build/lib.linux-x86_64-cpython-311/libsonata/__init__.py -> build/bdist.linux-x86_64/wheel/libsonata running install_egg_info running egg_info creating python/libsonata.egg-info writing python/libsonata.egg-info/PKG-INFO writing dependency_links to python/libsonata.egg-info/dependency_links.txt writing requirements to python/libsonata.egg-info/requires.txt writing top-level names to python/libsonata.egg-info/top_level.txt writing manifest file 'python/libsonata.egg-info/SOURCES.txt' reading manifest file 'python/libsonata.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*' under directory 'include' warning: no files found matching 'CMakeLists.txt' warning: no files found matching 'extlib/CMakeLists.txt' warning: no files found matching 'extlib/nlohmann/json.hpp' warning: no files found matching '*' under directory 'extlib/fmt/include' warning: no files found matching '*' under directory 'extlib/fmt/src' warning: no files found matching '*.cmake' under directory 'extlib/fmt/support/cmake' warning: no files found matching 'extlib/fmt/CMakeLists.txt' warning: no files found matching 'extlib/fmt/*.rst' warning: no files found matching '*' under directory 'extlib/HighFive/include' warning: no files found matching 'extlib/HighFive/CMakeLists.txt' warning: no files found matching 'extlib/HighFive/LICENSE' warning: no files found matching 'extlib/filesystem.hpp' warning: no files found matching '*' under directory 'python/pybind11/include' warning: no files found matching '*.cmake' under directory 'python/pybind11/tools' warning: no files found matching 'python/pybind11/CMakeLists.txt' warning: no files found matching 'python/pybind11/LICENSE' adding license file 'COPYING.LESSER' writing manifest file 'python/libsonata.egg-info/SOURCES.txt' Copying python/libsonata.egg-info to build/bdist.linux-x86_64/wheel/libsonata-0.1.11-py3.11.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/libsonata-0.1.11.dist-info/WHEEL creating '/builddir/build/BUILD/libsonata-0.1.11/.pyproject-builddir/pip-wheel-m9wgsw23/tmp8h40et49/libsonata-0.1.11-cp311-cp311-linux_x86_64.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'libsonata/__init__.py' adding 'libsonata-0.1.11.dist-info/COPYING.LESSER' adding 'libsonata-0.1.11.dist-info/METADATA' adding 'libsonata-0.1.11.dist-info/WHEEL' adding 'libsonata-0.1.11.dist-info/top_level.txt' adding 'libsonata-0.1.11.dist-info/RECORD' removing build/bdist.linux-x86_64/wheel Building wheel for libsonata (pyproject.toml): finished with status 'done' Created wheel for libsonata: filename=libsonata-0.1.11-cp311-cp311-linux_x86_64.whl size=7943 sha256=52b41f44df0c65c3b82e65e43113a23fbe6a5bdf122dace574b801f3a549ed66 Stored in directory: /builddir/.cache/pip/wheels/98/b9/bf/93df8a249826f6a9cbdc87a55ff009770ba6e075d6d09e4848 Successfully built libsonata + popd ~/build/BUILD/libsonata-0.1.11 + pushd tests/data ~/build/BUILD/libsonata-0.1.11/tests/data ~/build/BUILD/libsonata-0.1.11 + /usr/bin/python3 generate.py + popd ~/build/BUILD/libsonata-0.1.11 + mkdir -p redhat-linux-build/tests + cp -a tests/data redhat-linux-build/tests + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.MYzuii + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/libsonata-0.1.11-9.fc38.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/libsonata-0.1.11-9.fc38.x86_64 ++ dirname /builddir/build/BUILDROOT/libsonata-0.1.11-9.fc38.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/libsonata-0.1.11-9.fc38.x86_64 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd libsonata-0.1.11 + DESTDIR=/builddir/build/BUILDROOT/libsonata-0.1.11-9.fc38.x86_64 + /usr/bin/cmake --install redhat-linux-build -- Install configuration: "" -- Installing: /builddir/build/BUILDROOT/libsonata-0.1.11-9.fc38.x86_64/usr/lib64/libsonata.so.0.1.11 -- Installing: /builddir/build/BUILDROOT/libsonata-0.1.11-9.fc38.x86_64/usr/lib64/libsonata.so.0.1 -- Installing: /builddir/build/BUILDROOT/libsonata-0.1.11-9.fc38.x86_64/usr/lib64/libsonata.so -- Installing: /builddir/build/BUILDROOT/libsonata-0.1.11-9.fc38.x86_64/usr/lib64/libsonata.a -- Installing: /builddir/build/BUILDROOT/libsonata-0.1.11-9.fc38.x86_64/usr/include/bbp -- Installing: /builddir/build/BUILDROOT/libsonata-0.1.11-9.fc38.x86_64/usr/include/bbp/sonata -- Installing: /builddir/build/BUILDROOT/libsonata-0.1.11-9.fc38.x86_64/usr/include/bbp/sonata/report_reader.h -- Installing: /builddir/build/BUILDROOT/libsonata-0.1.11-9.fc38.x86_64/usr/include/bbp/sonata/population.h -- Installing: /builddir/build/BUILDROOT/libsonata-0.1.11-9.fc38.x86_64/usr/include/bbp/sonata/optional.hpp -- Installing: /builddir/build/BUILDROOT/libsonata-0.1.11-9.fc38.x86_64/usr/include/bbp/sonata/nodes.h -- Installing: /builddir/build/BUILDROOT/libsonata-0.1.11-9.fc38.x86_64/usr/include/bbp/sonata/node_sets.h -- Installing: /builddir/build/BUILDROOT/libsonata-0.1.11-9.fc38.x86_64/usr/include/bbp/sonata/edges.h -- Installing: /builddir/build/BUILDROOT/libsonata-0.1.11-9.fc38.x86_64/usr/include/bbp/sonata/config.h -- Installing: /builddir/build/BUILDROOT/libsonata-0.1.11-9.fc38.x86_64/usr/include/bbp/sonata/common.h -- Installing: /builddir/build/BUILDROOT/libsonata-0.1.11-9.fc38.x86_64/usr/share/sonata/CMake/sonata-config.cmake -- Installing: /builddir/build/BUILDROOT/libsonata-0.1.11-9.fc38.x86_64/usr/share/sonata/CMake/sonata-targets.cmake -- Installing: /builddir/build/BUILDROOT/libsonata-0.1.11-9.fc38.x86_64/usr/share/sonata/CMake/sonata-targets-noconfig.cmake + rm -rf /builddir/build/BUILDROOT/libsonata-0.1.11-9.fc38.x86_64//usr/lib64/libsonata.a + install -p -m 0655 -D -t /builddir/build/BUILDROOT/libsonata-0.1.11-9.fc38.x86_64//usr/lib64/python3.11/site-packages/libsonata/ redhat-linux-build/python/_libsonata.cpython-311-x86_64-linux-gnu.so + export SETUPTOOLS_SCM_PRETEND_VERSION=0.1.11 + SETUPTOOLS_SCM_PRETEND_VERSION=0.1.11 + pushd redhat-linux-build ~/build/BUILD/libsonata-0.1.11/redhat-linux-build ~/build/BUILD/libsonata-0.1.11 ++ ls /builddir/build/BUILD/libsonata-0.1.11/pyproject-wheeldir/libsonata-0.1.11-cp311-cp311-linux_x86_64.whl ++ sed -E 's/([^-]+)-([^-]+)-.+\.whl/\1==\2/' ++ xargs basename --multiple + specifier=libsonata==0.1.11 + TMPDIR=/builddir/build/BUILD/libsonata-0.1.11/.pyproject-builddir + /usr/bin/python3 -m pip install --root /builddir/build/BUILDROOT/libsonata-0.1.11-9.fc38.x86_64 --prefix /usr --no-deps --disable-pip-version-check --progress-bar off --verbose --ignore-installed --no-warn-script-location --no-index --no-cache-dir --find-links /builddir/build/BUILD/libsonata-0.1.11/pyproject-wheeldir libsonata==0.1.11 Using pip 22.3.1 from /usr/lib/python3.11/site-packages/pip (python 3.11) Looking in links: /builddir/build/BUILD/libsonata-0.1.11/pyproject-wheeldir Processing /builddir/build/BUILD/libsonata-0.1.11/pyproject-wheeldir/libsonata-0.1.11-cp311-cp311-linux_x86_64.whl Installing collected packages: libsonata Successfully installed libsonata-0.1.11 + '[' -d /builddir/build/BUILDROOT/libsonata-0.1.11-9.fc38.x86_64/usr/bin ']' + rm -f /builddir/build/BUILD/libsonata-0.1.11-9.fc38.x86_64-pyproject-ghost-distinfo + site_dirs=() + '[' -d /builddir/build/BUILDROOT/libsonata-0.1.11-9.fc38.x86_64/usr/lib/python3.11/site-packages ']' + '[' /builddir/build/BUILDROOT/libsonata-0.1.11-9.fc38.x86_64/usr/lib64/python3.11/site-packages '!=' /builddir/build/BUILDROOT/libsonata-0.1.11-9.fc38.x86_64/usr/lib/python3.11/site-packages ']' + '[' -d /builddir/build/BUILDROOT/libsonata-0.1.11-9.fc38.x86_64/usr/lib64/python3.11/site-packages ']' + site_dirs+=("/usr/lib64/python3.11/site-packages") + for site_dir in ${site_dirs[@]} + for distinfo in /builddir/build/BUILDROOT/libsonata-0.1.11-9.fc38.x86_64$site_dir/*.dist-info + echo '%ghost /usr/lib64/python3.11/site-packages/libsonata-0.1.11.dist-info' + sed -i s/pip/rpm/ /builddir/build/BUILDROOT/libsonata-0.1.11-9.fc38.x86_64/usr/lib64/python3.11/site-packages/libsonata-0.1.11.dist-info/INSTALLER + PYTHONPATH=/usr/lib/rpm/redhat + /usr/bin/python3 -B /usr/lib/rpm/redhat/pyproject_preprocess_record.py --buildroot /builddir/build/BUILDROOT/libsonata-0.1.11-9.fc38.x86_64 --record /builddir/build/BUILDROOT/libsonata-0.1.11-9.fc38.x86_64/usr/lib64/python3.11/site-packages/libsonata-0.1.11.dist-info/RECORD --output /builddir/build/BUILD/libsonata-0.1.11-9.fc38.x86_64-pyproject-record + rm -fv /builddir/build/BUILDROOT/libsonata-0.1.11-9.fc38.x86_64/usr/lib64/python3.11/site-packages/libsonata-0.1.11.dist-info/RECORD removed '/builddir/build/BUILDROOT/libsonata-0.1.11-9.fc38.x86_64/usr/lib64/python3.11/site-packages/libsonata-0.1.11.dist-info/RECORD' + rm -fv /builddir/build/BUILDROOT/libsonata-0.1.11-9.fc38.x86_64/usr/lib64/python3.11/site-packages/libsonata-0.1.11.dist-info/REQUESTED removed '/builddir/build/BUILDROOT/libsonata-0.1.11-9.fc38.x86_64/usr/lib64/python3.11/site-packages/libsonata-0.1.11.dist-info/REQUESTED' ++ wc -l /builddir/build/BUILD/libsonata-0.1.11-9.fc38.x86_64-pyproject-ghost-distinfo ++ cut -f1 '-d ' + lines=1 + '[' 1 -ne 1 ']' + /usr/bin/python3 /usr/lib/rpm/redhat/pyproject_save_files.py --output-files /builddir/build/BUILD/libsonata-0.1.11-9.fc38.x86_64-pyproject-files --output-modules /builddir/build/BUILD/libsonata-0.1.11-9.fc38.x86_64-pyproject-modules --buildroot /builddir/build/BUILDROOT/libsonata-0.1.11-9.fc38.x86_64 --sitelib /usr/lib/python3.11/site-packages --sitearch /usr/lib64/python3.11/site-packages --python-version 3.11 --pyproject-record /builddir/build/BUILD/libsonata-0.1.11-9.fc38.x86_64-pyproject-record --prefix /usr libsonata ~/build/BUILD/libsonata-0.1.11 + popd + /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 0.1.11-9.fc38 --unique-debug-suffix -0.1.11-9.fc38.x86_64 --unique-debug-src-base libsonata-0.1.11-9.fc38.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/libsonata-0.1.11 extracting debug info from /builddir/build/BUILDROOT/libsonata-0.1.11-9.fc38.x86_64/usr/lib64/libsonata.so.0.1.11 original debug info size: 15044kB, size after compression: 13888kB /usr/bin/sepdebugcrcfix: Updated 1 CRC32s, 0 CRC32s did match. 356 blocks + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2 Bytecompiling .py files below /builddir/build/BUILDROOT/libsonata-0.1.11-9.fc38.x86_64/usr/lib64/python3.11 using python3.11 + /usr/lib/rpm/redhat/brp-python-hardlink Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.ULQaFD + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd libsonata-0.1.11 + /usr/bin/ctest --test-dir redhat-linux-build --output-on-failure --force-new-ctest-process -j2 tests Internal ctest changing into directory: /builddir/build/BUILD/libsonata-0.1.11/redhat-linux-build Test project /builddir/build/BUILD/libsonata-0.1.11/redhat-linux-build Start 1: Selection Start 2: SpikeReader 1/30 Test #1: Selection ....................................... Passed 0.00 sec Start 3: SomaReportReader limits 2/30 Test #2: SpikeReader ..................................... Passed 0.01 sec Start 4: SomaReportReader 3/30 Test #3: SomaReportReader limits ......................... Passed 0.00 sec Start 5: ElementReportReader limits 4/30 Test #4: SomaReportReader ................................ Passed 0.01 sec Start 6: ElementReportReader 5/30 Test #5: ElementReportReader limits ...................... Passed 0.01 sec Start 7: NodePopulation 6/30 Test #6: ElementReportReader ............................. Passed 0.01 sec Start 8: NodePopulationMove 7/30 Test #7: NodePopulation .................................. Passed 0.01 sec Start 9: NodePopulationSelectAll 8/30 Test #8: NodePopulationMove .............................. Passed 0.01 sec Start 10: NodePopulationmatchAttributeValues 9/30 Test #9: NodePopulationSelectAll ......................... Passed 0.00 sec Start 11: NodePopulationmatchAttributeValues - int8_t 10/30 Test #10: NodePopulationmatchAttributeValues .............. Passed 0.01 sec Start 12: NodePopulationmatchAttributeValues - uint8_t 11/30 Test #11: NodePopulationmatchAttributeValues - int8_t ..... Passed 0.00 sec Start 13: NodePopulationmatchAttributeValues - int16_t 12/30 Test #12: NodePopulationmatchAttributeValues - uint8_t .... Passed 0.01 sec Start 14: NodePopulationmatchAttributeValues - uint16_t 13/30 Test #13: NodePopulationmatchAttributeValues - int16_t .... Passed 0.00 sec Start 15: NodePopulationmatchAttributeValues - int32_t 14/30 Test #15: NodePopulationmatchAttributeValues - int32_t .... Passed 0.00 sec Start 16: NodePopulationmatchAttributeValues - uint32_t 15/30 Test #14: NodePopulationmatchAttributeValues - uint16_t ... Passed 0.01 sec Start 17: NodePopulationmatchAttributeValues - int64_t 16/30 Test #16: NodePopulationmatchAttributeValues - uint32_t ... Passed 0.00 sec Start 18: NodePopulationmatchAttributeValues - uint64_t 17/30 Test #17: NodePopulationmatchAttributeValues - int64_t .... Passed 0.00 sec Start 19: NodeSetParse 18/30 Test #18: NodePopulationmatchAttributeValues - uint64_t ... Passed 0.01 sec Start 20: NodeSetBasic 19/30 Test #19: NodeSetParse .................................... Passed 0.01 sec Start 21: NodeSetCompound 20/30 Test #21: NodeSetCompound ................................. Passed 0.00 sec Start 22: NodeSet 21/30 Test #20: NodeSetBasic .................................... Passed 0.01 sec Start 23: EdgePopulation 22/30 Test #22: NodeSet ......................................... Passed 0.00 sec Start 24: EdgePopulationSelectAll 23/30 Test #24: EdgePopulationSelectAll ......................... Passed 0.01 sec Start 25: EdgePopulation::writeIndices 24/30 Test #23: EdgePopulation .................................. Passed 0.01 sec Start 26: EdgeStorage 25/30 Test #26: EdgeStorage ..................................... Passed 0.00 sec Start 27: CircuitConfig 26/30 Test #25: EdgePopulation::writeIndices .................... Passed 0.01 sec Start 28: SimulationConfig 27/30 Test #28: SimulationConfig ................................ Passed 0.00 sec Start 29: SONATA 28/30 Test #29: SONATA .......................................... Passed 0.00 sec Start 30: unittests 29/30 Test #27: CircuitConfig ................................... Passed 0.01 sec 30/30 Test #30: unittests ....................................... Passed 0.03 sec 100% tests passed, 0 tests failed out of 30 Total Test time (real) = 0.12 sec + pushd python/tests ~/build/BUILD/libsonata-0.1.11/python/tests ~/build/BUILD/libsonata-0.1.11 + export PYTHONPATH=/builddir/build/BUILDROOT/libsonata-0.1.11-9.fc38.x86_64//usr/lib64/python3.11/site-packages/ + PYTHONPATH=/builddir/build/BUILDROOT/libsonata-0.1.11-9.fc38.x86_64//usr/lib64/python3.11/site-packages/ + /usr/bin/python3 -m unittest -v test_basic (test.TestCircuitConfig.test_basic) ... ok test_expanded_json (test.TestCircuitConfig.test_expanded_json) ... ok test_get_population_properties (test.TestCircuitConfig.test_get_population_properties) ... ok test_afferent_edges (test.TestEdgePopulation.test_afferent_edges) ... ok test_connecting_edges (test.TestEdgePopulation.test_connecting_edges) ... ok test_efferent_edges (test.TestEdgePopulation.test_efferent_edges) ... ok test_select_all (test.TestEdgePopulation.test_select_all) ... ok test_source (test.TestEdgePopulation.test_source) ... ok test_source_nodes (test.TestEdgePopulation.test_source_nodes) ... ok test_target (test.TestEdgePopulation.test_target) ... ok test_target_nodes (test.TestEdgePopulation.test_target_nodes) ... ok test_get_all_population (test.TestElementReportPopulation.test_get_all_population) ... ok test_get_inexistant_population (test.TestElementReportPopulation.test_get_inexistant_population) ... HDF5-DIAG: Error detected in HDF5 (1.12.1) thread 0: #000: ../../src/H5G.c line 510 in H5Gopen2(): unable to open group major: Symbol table minor: Can't open object #001: ../../src/H5VLcallback.c line 4187 in H5VL_group_open(): group open failed major: Virtual Object Layer minor: Can't open object #002: ../../src/H5VLcallback.c line 4154 in H5VL__group_open(): group open failed major: Virtual Object Layer minor: Can't open object #003: ../../src/H5VLnative_group.c line 123 in H5VL__native_group_open(): unable to open group major: Symbol table minor: Can't open object #004: ../../src/H5Gint.c line 270 in H5G__open_name(): group not found major: Symbol table minor: Object not found #005: ../../src/H5Gloc.c line 442 in H5G_loc_find(): can't find object major: Symbol table minor: Object not found #006: ../../src/H5Gtraverse.c line 837 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #007: ../../src/H5Gtraverse.c line 613 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #008: ../../src/H5Gloc.c line 399 in H5G__loc_find_cb(): object 'foobar' doesn't exist major: Symbol table minor: Object not found ok test_get_node_id_element_id_mapping (test.TestElementReportPopulation.test_get_node_id_element_id_mapping) ... ok test_get_node_ids (test.TestElementReportPopulation.test_get_node_ids) ... ok test_get_population (test.TestElementReportPopulation.test_get_population) ... ok test_get_reports_from_population (test.TestElementReportPopulation.test_get_reports_from_population) ... ok test_attribute_names (test.TestNodePopulation.test_attribute_names) ... ok test_enumeration_names (test.TestNodePopulation.test_enumeration_names) ... ok test_enumeration_values (test.TestNodePopulation.test_enumeration_values) ... ok test_get_attribute (test.TestNodePopulation.test_get_attribute) ... ok test_get_dynamics_attribute (test.TestNodePopulation.test_get_dynamics_attribute) ... ok test_match_values (test.TestNodePopulation.test_match_values) ... ok test_name (test.TestNodePopulation.test_name) ... ok test_select_all (test.TestNodePopulation.test_select_all) ... ok test_size (test.TestNodePopulation.test_size) ... ok test_BasicScalarFailFloat (test.TestNodePopulationFailure.test_BasicScalarFailFloat) ... ok test_BasicScalarFailNegativeNodeIds (test.TestNodePopulationFailure.test_BasicScalarFailNegativeNodeIds) ... ok test_BasicScalarFailPopulation (test.TestNodePopulationFailure.test_BasicScalarFailPopulation) ... ok test_CorrectStructure (test.TestNodePopulationFailure.test_CorrectStructure) ... ok test_FailCompoundWithInt (test.TestNodePopulationFailure.test_FailCompoundWithInt) ... ok test_FaileRecursiveCompound (test.TestNodePopulationFailure.test_FaileRecursiveCompound) ... ok test_MissingBasic (test.TestNodePopulationFailure.test_MissingBasic) ... ok test_BasicScalarAnded (test.TestNodePopulationNodeSet.test_BasicScalarAnded) ... ok test_BasicScalarEnum (test.TestNodePopulationNodeSet.test_BasicScalarEnum) ... ok test_BasicScalarInt (test.TestNodePopulationNodeSet.test_BasicScalarInt) ... ok test_BasicScalarNodeId (test.TestNodePopulationNodeSet.test_BasicScalarNodeId) ... ok test_BasicScalarPopulation (test.TestNodePopulationNodeSet.test_BasicScalarPopulation) ... ok test_BasicScalarString (test.TestNodePopulationNodeSet.test_BasicScalarString) ... ok test_NodeSetCompound (test.TestNodePopulationNodeSet.test_NodeSetCompound) ... ok test_NodeSet_toJSON (test.TestNodePopulationNodeSet.test_NodeSet_toJSON) ... ok test_basic (test.TestSelection.test_basic) ... ok test_comparison (test.TestSelection.test_comparison) ... ok test_dtypes (test.TestSelection.test_dtypes) ... /builddir/build/BUILD/libsonata-0.1.11/python/tests/test.py:37: DeprecationWarning: `np.int` is a deprecated alias for the builtin `int`. To silence this warning, use `int` by itself. Doing this will not modify any behavior and is safe. When replacing `np.int`, you may wish to use e.g. `np.int64` or `np.int32` to specify the precision. If you wish to review your current use, check the release note link for additional information. Deprecated in NumPy 1.20; for more details and guidance: https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations for dtype in (np.int, np.int16, np.int32, np.int64, ): ok test_from_ranges (test.TestSelection.test_from_ranges) ... ok test_from_values (test.TestSelection.test_from_values) ... ok test_from_values_empty (test.TestSelection.test_from_values_empty) ... ok test_union_intersection (test.TestSelection.test_union_intersection) ... ok test_basic (test.TestSimulationConfig.test_basic) ... ok test_json (test.TestSimulationConfig.test_json) ... ok test_get_all_population (test.TestSomaReportPopulation.test_get_all_population) ... ok test_get_inexistant_population (test.TestSomaReportPopulation.test_get_inexistant_population) ... HDF5-DIAG: Error detected in HDF5 (1.12.1) thread 0: #000: ../../src/H5G.c line 510 in H5Gopen2(): unable to open group major: Symbol table minor: Can't open object #001: ../../src/H5VLcallback.c line 4187 in H5VL_group_open(): group open failed major: Virtual Object Layer minor: Can't open object #002: ../../src/H5VLcallback.c line 4154 in H5VL__group_open(): group open failed major: Virtual Object Layer minor: Can't open object #003: ../../src/H5VLnative_group.c line 123 in H5VL__native_group_open(): unable to open group major: Symbol table minor: Can't open object #004: ../../src/H5Gint.c line 270 in H5G__open_name(): group not found major: Symbol table minor: Object not found #005: ../../src/H5Gloc.c line 442 in H5G_loc_find(): can't find object major: Symbol table minor: Object not found #006: ../../src/H5Gtraverse.c line 837 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #007: ../../src/H5Gtraverse.c line 613 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #008: ../../src/H5Gloc.c line 399 in H5G__loc_find_cb(): object 'foobar' doesn't exist major: Symbol table minor: Object not found ok test_get_node_id_element_id_mapping (test.TestSomaReportPopulation.test_get_node_id_element_id_mapping) ... ok test_get_population (test.TestSomaReportPopulation.test_get_population) ... ok test_get_reports_from_population (test.TestSomaReportPopulation.test_get_reports_from_population) ... ok test_getTimes_from_population (test.TestSpikePopulation.test_getTimes_from_population) ... ok test_get_all_populations (test.TestSpikePopulation.test_get_all_populations) ... ok test_get_inexistant_population (test.TestSpikePopulation.test_get_inexistant_population) ... HDF5-DIAG: Error detected in HDF5 (1.12.1) thread 0: #000: ../../src/H5G.c line 510 in H5Gopen2(): unable to open group major: Symbol table minor: Can't open object #001: ../../src/H5VLcallback.c line 4187 in H5VL_group_open(): group open failed major: Virtual Object Layer minor: Can't open object #002: ../../src/H5VLcallback.c line 4154 in H5VL__group_open(): group open failed major: Virtual Object Layer minor: Can't open object #003: ../../src/H5VLnative_group.c line 123 in H5VL__native_group_open(): unable to open group major: Symbol table minor: Can't open object #004: ../../src/H5Gint.c line 270 in H5G__open_name(): group not found major: Symbol table minor: Object not found #005: ../../src/H5Gloc.c line 442 in H5G_loc_find(): can't find object major: Symbol table minor: Object not found #006: ../../src/H5Gtraverse.c line 837 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #007: ../../src/H5Gtraverse.c line 613 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #008: ../../src/H5Gloc.c line 399 in H5G__loc_find_cb(): object 'foobar' doesn't exist major: Symbol table minor: Object not found ok test_get_population (test.TestSpikePopulation.test_get_population) ... ok test_get_spikes_from_population (test.TestSpikePopulation.test_get_spikes_from_population) ... ok ---------------------------------------------------------------------- Ran 60 tests in 0.043s OK ~/build/BUILD/libsonata-0.1.11 + popd + RPM_EC=0 ++ jobs -p Processing files: libsonata-0.1.11-9.fc38.x86_64 + exit 0 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.ngaYTO + umask 022 + cd /builddir/build/BUILD + cd libsonata-0.1.11 + DOCDIR=/builddir/build/BUILDROOT/libsonata-0.1.11-9.fc38.x86_64/usr/share/doc/libsonata + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/libsonata-0.1.11-9.fc38.x86_64/usr/share/doc/libsonata + cp -pr README.rst /builddir/build/BUILDROOT/libsonata-0.1.11-9.fc38.x86_64/usr/share/doc/libsonata + cp -pr CHANGELOG.md /builddir/build/BUILDROOT/libsonata-0.1.11-9.fc38.x86_64/usr/share/doc/libsonata + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.4JB24F + umask 022 + cd /builddir/build/BUILD + cd libsonata-0.1.11 + LICENSEDIR=/builddir/build/BUILDROOT/libsonata-0.1.11-9.fc38.x86_64/usr/share/licenses/libsonata + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/libsonata-0.1.11-9.fc38.x86_64/usr/share/licenses/libsonata + cp -pr COPYING.LESSER /builddir/build/BUILDROOT/libsonata-0.1.11-9.fc38.x86_64/usr/share/licenses/libsonata + RPM_EC=0 ++ jobs -p + exit 0 Provides: libsonata = 0.1.11-9.fc38 libsonata(x86-64) = 0.1.11-9.fc38 libsonata.so.0.1()(64bit) Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.4)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libhdf5.so.200()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.5)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) rtld(GNU_HASH) Processing files: libsonata-devel-0.1.11-9.fc38.x86_64 Provides: libsonata-devel = 0.1.11-9.fc38 libsonata-devel(x86-64) = 0.1.11-9.fc38 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libsonata.so.0.1()(64bit) Processing files: python3-libsonata-0.1.11-9.fc38.x86_64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.hUcZ9C + umask 022 + cd /builddir/build/BUILD + cd libsonata-0.1.11 + DOCDIR=/builddir/build/BUILDROOT/libsonata-0.1.11-9.fc38.x86_64/usr/share/doc/python3-libsonata + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/libsonata-0.1.11-9.fc38.x86_64/usr/share/doc/python3-libsonata + cp -pr README.rst /builddir/build/BUILDROOT/libsonata-0.1.11-9.fc38.x86_64/usr/share/doc/python3-libsonata + cp -pr CHANGELOG.md /builddir/build/BUILDROOT/libsonata-0.1.11-9.fc38.x86_64/usr/share/doc/python3-libsonata + RPM_EC=0 ++ jobs -p + exit 0 Provides: python-libsonata = 0.1.11-9.fc38 python3-libsonata = 0.1.11-9.fc38 python3-libsonata(x86-64) = 0.1.11-9.fc38 python3.11-libsonata = 0.1.11-9.fc38 python3.11dist(libsonata) = 0.1.11 python3dist(libsonata) = 0.1.11 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: ld-linux-x86-64.so.2()(64bit) ld-linux-x86-64.so.2(GLIBC_2.3)(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.4)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libhdf5.so.200()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.11)(64bit) libstdc++.so.6(CXXABI_1.3.13)(64bit) libstdc++.so.6(CXXABI_1.3.2)(64bit) libstdc++.so.6(CXXABI_1.3.3)(64bit) libstdc++.so.6(CXXABI_1.3.5)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) python(abi) = 3.11 python3.11dist(numpy) >= 1.14.5 rtld(GNU_HASH) Processing files: libsonata-debugsource-0.1.11-9.fc38.x86_64 Provides: libsonata-debugsource = 0.1.11-9.fc38 libsonata-debugsource(x86-64) = 0.1.11-9.fc38 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: libsonata-debuginfo-0.1.11-9.fc38.x86_64 Provides: debuginfo(build-id) = bb0446d648cfbcd49494f93631a520d5ddd67736 libsonata-debuginfo = 0.1.11-9.fc38 libsonata-debuginfo(x86-64) = 0.1.11-9.fc38 libsonata.so.0.1.11-0.1.11-9.fc38.x86_64.debug()(64bit) Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: libsonata-debugsource(x86-64) = 0.1.11-9.fc38 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/libsonata-0.1.11-9.fc38.x86_64 Wrote: /builddir/build/RPMS/python3-libsonata-0.1.11-9.fc38.x86_64.rpm Wrote: /builddir/build/RPMS/libsonata-0.1.11-9.fc38.x86_64.rpm Wrote: /builddir/build/RPMS/libsonata-debugsource-0.1.11-9.fc38.x86_64.rpm Wrote: /builddir/build/RPMS/libsonata-devel-0.1.11-9.fc38.x86_64.rpm Wrote: /builddir/build/RPMS/libsonata-debuginfo-0.1.11-9.fc38.x86_64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.OfiZ6P + umask 022 + cd /builddir/build/BUILD + cd libsonata-0.1.11 + /usr/bin/rm -rf /builddir/build/BUILDROOT/libsonata-0.1.11-9.fc38.x86_64 + RPM_EC=0 ++ jobs -p + exit 0 Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.QOpPHr + umask 022 + cd /builddir/build/BUILD + rm -rf libsonata-0.1.11 libsonata-0.1.11.gemspec + RPM_EC=0 ++ jobs -p + exit 0 Child return code was: 0