Mock Version: 3.5
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs  --target x86_64 --nodeps /builddir/build/SPECS/python-pysb.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1674317250.803918/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x7f2cd0e21410>timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.n2v2p_26:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=True)
Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.n2v2p_26:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']
Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'faaabb6c6f7643a1b90ec11af988cc0f', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1674317250.803918/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.n2v2p_26:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;<mock-chroot>\\007"', '--setenv=PS1=<mock-chroot> \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bs  --target x86_64 --nodeps /builddir/build/SPECS/python-pysb.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1674172800
Wrote: /builddir/build/SRPMS/python-pysb-1.14.0-2.fc38.src.rpm
Child return code was: 0
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb  --target x86_64 --nodeps /builddir/build/SPECS/python-pysb.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1674317250.803918/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x7f2cd0e21410>timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.n2v2p_26:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=True)
Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.n2v2p_26:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']
Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '1d8ca35fec6542a387ec7743986fe3a3', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1674317250.803918/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.n2v2p_26:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;<mock-chroot>\\007"', '--setenv=PS1=<mock-chroot> \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bb  --target x86_64 --nodeps /builddir/build/SPECS/python-pysb.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1674172800
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.Apx5Cz
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf pysb-1.14.0
+ /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/pysb-1.14.0.tar.gz
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd pysb-1.14.0
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ sed -i -e 's|/usr/local/share/BioNetGen|/usr/share/perl5/vendor_perl/BioNetGen|' -e 's|'\''c:/Program Files/BioNetGen'\'',||' pysb/bng.py
+ sed -i -s '1 s|/usr/bin/env python|/usr/bin/python3|' pysb/examples/__init__.py pysb/examples/bax_pore.py pysb/examples/bax_pore_sequential.py pysb/examples/bngwiki_egfr_simple.py pysb/examples/bngwiki_enzymatic_cycle_mm.py pysb/examples/bngwiki_simple.py pysb/examples/earm_1_0.py pysb/examples/earm_1_3.py pysb/examples/explicit.py pysb/examples/expression_observables.py pysb/examples/fixed_initial.py pysb/examples/fricker_2010_apoptosis.py pysb/examples/hello_pysb.py pysb/examples/kinase_cascade.py pysb/examples/localfunc.py pysb/examples/michment.py pysb/examples/move_connected.py pysb/examples/robertson.py pysb/examples/run_bax_pore.py pysb/examples/run_bax_pore_sequential.py pysb/examples/run_bng_ssa_example.py pysb/examples/run_earm_1_0.py pysb/examples/run_earm_hpp.py pysb/examples/run_earm_stochkit.py pysb/examples/run_fixed_initial.py pysb/examples/run_kinase_cascade.py pysb/examples/run_michment.py pysb/examples/run_robertson.py pysb/examples/run_tutorial_a.py pysb/examples/run_tyson_oscillator.py pysb/examples/run_tyson_oscillator_stochkit.py pysb/examples/synth_deg.py pysb/examples/tutorial_a.py pysb/examples/tutorial_b.py pysb/examples/tutorial_c.py pysb/examples/tyson_oscillator.py pysb/tools/__init__.py pysb/tools/render_reactions.py pysb/tools/render_species.py pysb/tools/sensitivity_analysis.py pysb/tools/species_graph.py
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.bJS7AP
+ umask 022
+ cd /builddir/build/BUILD
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer'
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer'
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules'
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes'
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd pysb-1.14.0
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer'
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes'
+ /usr/bin/python3 setup.py build '--executable=/usr/bin/python3 -sP'
running build
running build_py
creating build
creating build/lib
creating build/lib/pysb
copying pysb/bng.py -> build/lib/pysb
copying pysb/util.py -> build/lib/pysb
copying pysb/pattern.py -> build/lib/pysb
copying pysb/pathfinder.py -> build/lib/pysb
copying pysb/macros.py -> build/lib/pysb
copying pysb/logging.py -> build/lib/pysb
copying pysb/kappa.py -> build/lib/pysb
copying pysb/jacobian.py -> build/lib/pysb
copying pysb/integrate.py -> build/lib/pysb
copying pysb/core.py -> build/lib/pysb
copying pysb/builder.py -> build/lib/pysb
copying pysb/annotation.py -> build/lib/pysb
copying pysb/anneal_mod.py -> build/lib/pysb
copying pysb/_version.py -> build/lib/pysb
copying pysb/__init__.py -> build/lib/pysb
creating build/lib/pysb/generator
copying pysb/generator/kappa.py -> build/lib/pysb/generator
copying pysb/generator/bng.py -> build/lib/pysb/generator
copying pysb/generator/__init__.py -> build/lib/pysb/generator
creating build/lib/pysb/importers
copying pysb/importers/sbml.py -> build/lib/pysb/importers
copying pysb/importers/json.py -> build/lib/pysb/importers
copying pysb/importers/bngl.py -> build/lib/pysb/importers
copying pysb/importers/__init__.py -> build/lib/pysb/importers
creating build/lib/pysb/tools
copying pysb/tools/species_graph.py -> build/lib/pysb/tools
copying pysb/tools/sensitivity_analysis.py -> build/lib/pysb/tools
copying pysb/tools/render_species.py -> build/lib/pysb/tools
copying pysb/tools/render_reactions.py -> build/lib/pysb/tools
copying pysb/tools/__init__.py -> build/lib/pysb/tools
creating build/lib/pysb/examples
copying pysb/examples/tyson_oscillator.py -> build/lib/pysb/examples
copying pysb/examples/tutorial_c.py -> build/lib/pysb/examples
copying pysb/examples/tutorial_b.py -> build/lib/pysb/examples
copying pysb/examples/tutorial_a.py -> build/lib/pysb/examples
copying pysb/examples/synth_deg.py -> build/lib/pysb/examples
copying pysb/examples/run_tyson_oscillator_stochkit.py -> build/lib/pysb/examples
copying pysb/examples/run_tyson_oscillator.py -> build/lib/pysb/examples
copying pysb/examples/run_tutorial_a.py -> build/lib/pysb/examples
copying pysb/examples/run_robertson.py -> build/lib/pysb/examples
copying pysb/examples/run_michment.py -> build/lib/pysb/examples
copying pysb/examples/run_kinase_cascade.py -> build/lib/pysb/examples
copying pysb/examples/run_fixed_initial.py -> build/lib/pysb/examples
copying pysb/examples/run_earm_stochkit.py -> build/lib/pysb/examples
copying pysb/examples/run_earm_hpp.py -> build/lib/pysb/examples
copying pysb/examples/run_earm_1_0.py -> build/lib/pysb/examples
copying pysb/examples/run_bng_ssa_example.py -> build/lib/pysb/examples
copying pysb/examples/run_bax_pore_sequential.py -> build/lib/pysb/examples
copying pysb/examples/run_bax_pore.py -> build/lib/pysb/examples
copying pysb/examples/robertson.py -> build/lib/pysb/examples
copying pysb/examples/move_connected.py -> build/lib/pysb/examples
copying pysb/examples/michment.py -> build/lib/pysb/examples
copying pysb/examples/localfunc.py -> build/lib/pysb/examples
copying pysb/examples/kinase_cascade.py -> build/lib/pysb/examples
copying pysb/examples/hello_pysb.py -> build/lib/pysb/examples
copying pysb/examples/fricker_2010_apoptosis.py -> build/lib/pysb/examples
copying pysb/examples/fixed_initial.py -> build/lib/pysb/examples
copying pysb/examples/expression_observables.py -> build/lib/pysb/examples
copying pysb/examples/explicit.py -> build/lib/pysb/examples
copying pysb/examples/earm_1_3.py -> build/lib/pysb/examples
copying pysb/examples/earm_1_0.py -> build/lib/pysb/examples
copying pysb/examples/bngwiki_simple.py -> build/lib/pysb/examples
copying pysb/examples/bngwiki_enzymatic_cycle_mm.py -> build/lib/pysb/examples
copying pysb/examples/bngwiki_egfr_simple.py -> build/lib/pysb/examples
copying pysb/examples/bax_pore_sequential.py -> build/lib/pysb/examples
copying pysb/examples/bax_pore.py -> build/lib/pysb/examples
copying pysb/examples/__init__.py -> build/lib/pysb/examples
creating build/lib/pysb/export
copying pysb/export/stochkit.py -> build/lib/pysb/export
copying pysb/export/sbml.py -> build/lib/pysb/export
copying pysb/export/pysb_flat.py -> build/lib/pysb/export
copying pysb/export/potterswheel.py -> build/lib/pysb/export
copying pysb/export/matlab.py -> build/lib/pysb/export
copying pysb/export/mathematica.py -> build/lib/pysb/export
copying pysb/export/kappa.py -> build/lib/pysb/export
copying pysb/export/json.py -> build/lib/pysb/export
copying pysb/export/bngl.py -> build/lib/pysb/export
copying pysb/export/bng_net.py -> build/lib/pysb/export
copying pysb/export/__main__.py -> build/lib/pysb/export
copying pysb/export/__init__.py -> build/lib/pysb/export
creating build/lib/pysb/simulator
copying pysb/simulator/stochkit.py -> build/lib/pysb/simulator
copying pysb/simulator/scipyode.py -> build/lib/pysb/simulator
copying pysb/simulator/kappa.py -> build/lib/pysb/simulator
copying pysb/simulator/cupsoda.py -> build/lib/pysb/simulator
copying pysb/simulator/bng.py -> build/lib/pysb/simulator
copying pysb/simulator/base.py -> build/lib/pysb/simulator
copying pysb/simulator/__init__.py -> build/lib/pysb/simulator
creating build/lib/pysb/testing
copying pysb/testing/modeltests.py -> build/lib/pysb/testing
copying pysb/testing/__init__.py -> build/lib/pysb/testing
creating build/lib/pysb/tests
copying pysb/tests/test_util.py -> build/lib/pysb/tests
copying pysb/tests/test_simulator_stochkit.py -> build/lib/pysb/tests
copying pysb/tests/test_simulator_scipy.py -> build/lib/pysb/tests
copying pysb/tests/test_simulator_kappa.py -> build/lib/pysb/tests
copying pysb/tests/test_simulator_cupsoda.py -> build/lib/pysb/tests
copying pysb/tests/test_simulator_bng.py -> build/lib/pysb/tests
copying pysb/tests/test_simulationresult.py -> build/lib/pysb/tests
copying pysb/tests/test_sensitivity_analysis.py -> build/lib/pysb/tests
copying pysb/tests/test_pattern.py -> build/lib/pysb/tests
copying pysb/tests/test_pathfinder.py -> build/lib/pysb/tests
copying pysb/tests/test_macros.py -> build/lib/pysb/tests
copying pysb/tests/test_kappa.py -> build/lib/pysb/tests
copying pysb/tests/test_integrate.py -> build/lib/pysb/tests
copying pysb/tests/test_importers.py -> build/lib/pysb/tests
copying pysb/tests/test_expressions.py -> build/lib/pysb/tests
copying pysb/tests/test_exporters.py -> build/lib/pysb/tests
copying pysb/tests/test_examples.py -> build/lib/pysb/tests
copying pysb/tests/test_core.py -> build/lib/pysb/tests
copying pysb/tests/test_bng.py -> build/lib/pysb/tests
copying pysb/tests/jacobian_runtimes.py -> build/lib/pysb/tests
copying pysb/tests/__init__.py -> build/lib/pysb/tests
UPDATING build/lib/pysb/_version.py
set build/lib/pysb/_version.py to '1.14.0'
running build_scripts
creating build/scripts-3.11
copying and adjusting scripts/pysb_export -> build/scripts-3.11
changing mode of build/scripts-3.11/pysb_export from 644 to 755
+ make -C doc html
make: Entering directory '/builddir/build/BUILD/pysb-1.14.0/doc'
sphinx-build -b html -d _build/doctrees   . _build/html
Running Sphinx v5.3.0
making output directory... done
[autosummary] generating autosummary for: faq.rst, index.rst, installation.rst, modules/bng.rst, modules/core.rst, modules/export/bng_net.rst, modules/export/bngl.rst, modules/export/index.rst, modules/export/json.rst, modules/export/kappa.rst, ..., modules/modeltests.rst, modules/pathfinder.rst, modules/pattern.rst, modules/simulator.rst, modules/tools/render.rst, modules/tools/render_reactions.rst, modules/tools/render_species.rst, modules/tools/sensitivity_analysis.rst, tutorial.rst, useful_references.rst
building [mo]: targets for 0 po files that are out of date
building [html]: targets for 31 source files that are out of date
updating environment: [new config] 31 added, 0 changed, 0 removed
reading sources... [  3%] faq
reading sources... [  6%] index
reading sources... [  9%] installation
reading sources... [ 12%] modules/bng
reading sources... [ 16%] modules/core
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reading sources... [ 83%] modules/tools/render
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reading sources... [ 93%] modules/tools/sensitivity_analysis
reading sources... [ 96%] tutorial
reading sources... [100%] useful_references
looking for now-outdated files... none found
pickling environment... done
checking consistency... done
preparing documents... done
writing output... [  3%] faq
writing output... [  6%] index
writing output... [  9%] installation
writing output... [ 12%] modules/bng
writing output... [ 16%] modules/core
writing output... [ 19%] modules/export/bng_net
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writing output... [ 29%] modules/export/json
writing output... [ 32%] modules/export/kappa
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writing output... [ 96%] tutorial
writing output... [100%] useful_references
generating indices... genindex py-modindex done
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writing additional pages... search done
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copying static files... done
copying extra files... done
dumping search index in English (code: en)... done
dumping object inventory... done
build succeeded.
The HTML pages are in _build/html.
Build finished. The HTML pages are in _build/html.
make: Leaving directory '/builddir/build/BUILD/pysb-1.14.0/doc'
+ rm doc/_build/html/.buildinfo
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.7dr1ud
+ umask 022
+ cd /builddir/build/BUILD
+ '[' /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64 '!=' / ']'
+ rm -rf /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64
++ dirname /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer'
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer'
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules'
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes'
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd pysb-1.14.0
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer'
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes'
+ /usr/bin/python3 setup.py install -O1 --skip-build --root /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64 --prefix /usr
running install
/usr/lib/python3.11/site-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
  warnings.warn(
running install_lib
creating /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr
creating /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib
creating /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11
creating /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages
creating /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb
copying build/lib/pysb/_version.py -> /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb
creating /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/tests
copying build/lib/pysb/tests/__init__.py -> /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/tests
copying build/lib/pysb/tests/jacobian_runtimes.py -> /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/tests
copying build/lib/pysb/tests/test_bng.py -> /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/tests
copying build/lib/pysb/tests/test_core.py -> /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/tests
copying build/lib/pysb/tests/test_examples.py -> /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/tests
copying build/lib/pysb/tests/test_exporters.py -> /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/tests
copying build/lib/pysb/tests/test_expressions.py -> /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/tests
copying build/lib/pysb/tests/test_importers.py -> /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/tests
copying build/lib/pysb/tests/test_integrate.py -> /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/tests
copying build/lib/pysb/tests/test_kappa.py -> /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/tests
copying build/lib/pysb/tests/test_macros.py -> /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/tests
copying build/lib/pysb/tests/test_pathfinder.py -> /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/tests
copying build/lib/pysb/tests/test_pattern.py -> /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/tests
copying build/lib/pysb/tests/test_sensitivity_analysis.py -> /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/tests
copying build/lib/pysb/tests/test_simulationresult.py -> /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/tests
copying build/lib/pysb/tests/test_simulator_bng.py -> /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/tests
copying build/lib/pysb/tests/test_simulator_cupsoda.py -> /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/tests
copying build/lib/pysb/tests/test_simulator_kappa.py -> /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/tests
copying build/lib/pysb/tests/test_simulator_scipy.py -> /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/tests
copying build/lib/pysb/tests/test_simulator_stochkit.py -> /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/tests
copying build/lib/pysb/tests/test_util.py -> /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/tests
creating /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/testing
copying build/lib/pysb/testing/__init__.py -> /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/testing
copying build/lib/pysb/testing/modeltests.py -> /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/testing
creating /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/simulator
copying build/lib/pysb/simulator/__init__.py -> /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/simulator
copying build/lib/pysb/simulator/base.py -> /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/simulator
copying build/lib/pysb/simulator/bng.py -> /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/simulator
copying build/lib/pysb/simulator/cupsoda.py -> /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/simulator
copying build/lib/pysb/simulator/kappa.py -> /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/simulator
copying build/lib/pysb/simulator/scipyode.py -> /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/simulator
copying build/lib/pysb/simulator/stochkit.py -> /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/simulator
creating /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/export
copying build/lib/pysb/export/__init__.py -> /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/export
copying build/lib/pysb/export/__main__.py -> /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/export
copying build/lib/pysb/export/bng_net.py -> /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/export
copying build/lib/pysb/export/bngl.py -> /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/export
copying build/lib/pysb/export/json.py -> /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/export
copying build/lib/pysb/export/kappa.py -> /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/export
copying build/lib/pysb/export/mathematica.py -> /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/export
copying build/lib/pysb/export/matlab.py -> /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/export
copying build/lib/pysb/export/potterswheel.py -> /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/export
copying build/lib/pysb/export/pysb_flat.py -> /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/export
copying build/lib/pysb/export/sbml.py -> /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/export
copying build/lib/pysb/export/stochkit.py -> /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/export
creating /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/examples
copying build/lib/pysb/examples/__init__.py -> /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/examples
copying build/lib/pysb/examples/bax_pore.py -> /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/examples
copying build/lib/pysb/examples/bax_pore_sequential.py -> /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/examples
copying build/lib/pysb/examples/bngwiki_egfr_simple.py -> /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/examples
copying build/lib/pysb/examples/bngwiki_enzymatic_cycle_mm.py -> /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/examples
copying build/lib/pysb/examples/bngwiki_simple.py -> /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/examples
copying build/lib/pysb/examples/earm_1_0.py -> /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/examples
copying build/lib/pysb/examples/earm_1_3.py -> /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/examples
copying build/lib/pysb/examples/explicit.py -> /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/examples
copying build/lib/pysb/examples/expression_observables.py -> /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/examples
copying build/lib/pysb/examples/fixed_initial.py -> /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/examples
copying build/lib/pysb/examples/fricker_2010_apoptosis.py -> /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/examples
copying build/lib/pysb/examples/hello_pysb.py -> /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/examples
copying build/lib/pysb/examples/kinase_cascade.py -> /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/examples
copying build/lib/pysb/examples/localfunc.py -> /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/examples
copying build/lib/pysb/examples/michment.py -> /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/examples
copying build/lib/pysb/examples/move_connected.py -> /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/examples
copying build/lib/pysb/examples/robertson.py -> /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/examples
copying build/lib/pysb/examples/run_bax_pore.py -> /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/examples
copying build/lib/pysb/examples/run_bax_pore_sequential.py -> /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/examples
copying build/lib/pysb/examples/run_bng_ssa_example.py -> /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/examples
copying build/lib/pysb/examples/run_earm_1_0.py -> /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/examples
copying build/lib/pysb/examples/run_earm_hpp.py -> /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/examples
copying build/lib/pysb/examples/run_earm_stochkit.py -> /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/examples
copying build/lib/pysb/examples/run_fixed_initial.py -> /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/examples
copying build/lib/pysb/examples/run_kinase_cascade.py -> /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/examples
copying build/lib/pysb/examples/run_michment.py -> /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/examples
copying build/lib/pysb/examples/run_robertson.py -> /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/examples
copying build/lib/pysb/examples/run_tutorial_a.py -> /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/examples
copying build/lib/pysb/examples/run_tyson_oscillator.py -> /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/examples
copying build/lib/pysb/examples/run_tyson_oscillator_stochkit.py -> /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/examples
copying build/lib/pysb/examples/synth_deg.py -> /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/examples
copying build/lib/pysb/examples/tutorial_a.py -> /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/examples
copying build/lib/pysb/examples/tutorial_b.py -> /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/examples
copying build/lib/pysb/examples/tutorial_c.py -> /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/examples
copying build/lib/pysb/examples/tyson_oscillator.py -> /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/examples
creating /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/tools
copying build/lib/pysb/tools/__init__.py -> /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/tools
copying build/lib/pysb/tools/render_reactions.py -> /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/tools
copying build/lib/pysb/tools/render_species.py -> /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/tools
copying build/lib/pysb/tools/sensitivity_analysis.py -> /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/tools
copying build/lib/pysb/tools/species_graph.py -> /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/tools
creating /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/importers
copying build/lib/pysb/importers/__init__.py -> /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/importers
copying build/lib/pysb/importers/bngl.py -> /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/importers
copying build/lib/pysb/importers/json.py -> /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/importers
copying build/lib/pysb/importers/sbml.py -> /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/importers
creating /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/generator
copying build/lib/pysb/generator/__init__.py -> /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/generator
copying build/lib/pysb/generator/bng.py -> /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/generator
copying build/lib/pysb/generator/kappa.py -> /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/generator
copying build/lib/pysb/__init__.py -> /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb
copying build/lib/pysb/anneal_mod.py -> /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb
copying build/lib/pysb/annotation.py -> /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb
copying build/lib/pysb/builder.py -> /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb
copying build/lib/pysb/core.py -> /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb
copying build/lib/pysb/integrate.py -> /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb
copying build/lib/pysb/jacobian.py -> /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb
copying build/lib/pysb/kappa.py -> /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb
copying build/lib/pysb/logging.py -> /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb
copying build/lib/pysb/macros.py -> /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb
copying build/lib/pysb/pathfinder.py -> /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb
copying build/lib/pysb/pattern.py -> /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb
copying build/lib/pysb/util.py -> /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb
copying build/lib/pysb/bng.py -> /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb
byte-compiling /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/_version.py to _version.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/tests/__init__.py to __init__.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/tests/jacobian_runtimes.py to jacobian_runtimes.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/tests/test_bng.py to test_bng.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/tests/test_core.py to test_core.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/tests/test_examples.py to test_examples.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/tests/test_exporters.py to test_exporters.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/tests/test_expressions.py to test_expressions.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/tests/test_importers.py to test_importers.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/tests/test_integrate.py to test_integrate.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/tests/test_kappa.py to test_kappa.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/tests/test_macros.py to test_macros.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/tests/test_pathfinder.py to test_pathfinder.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/tests/test_pattern.py to test_pattern.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/tests/test_sensitivity_analysis.py to test_sensitivity_analysis.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/tests/test_simulationresult.py to test_simulationresult.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/tests/test_simulator_bng.py to test_simulator_bng.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/tests/test_simulator_cupsoda.py to test_simulator_cupsoda.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/tests/test_simulator_kappa.py to test_simulator_kappa.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/tests/test_simulator_scipy.py to test_simulator_scipy.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/tests/test_simulator_stochkit.py to test_simulator_stochkit.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/tests/test_util.py to test_util.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/testing/__init__.py to __init__.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/testing/modeltests.py to modeltests.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/simulator/__init__.py to __init__.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/simulator/base.py to base.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/simulator/bng.py to bng.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/simulator/cupsoda.py to cupsoda.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/simulator/kappa.py to kappa.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/simulator/scipyode.py to scipyode.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/simulator/stochkit.py to stochkit.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/export/__init__.py to __init__.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/export/__main__.py to __main__.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/export/bng_net.py to bng_net.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/export/bngl.py to bngl.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/export/json.py to json.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/export/kappa.py to kappa.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/export/mathematica.py to mathematica.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/export/matlab.py to matlab.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/export/potterswheel.py to potterswheel.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/export/pysb_flat.py to pysb_flat.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/export/sbml.py to sbml.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/export/stochkit.py to stochkit.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/examples/__init__.py to __init__.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/examples/bax_pore.py to bax_pore.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/examples/bax_pore_sequential.py to bax_pore_sequential.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/examples/bngwiki_egfr_simple.py to bngwiki_egfr_simple.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/examples/bngwiki_enzymatic_cycle_mm.py to bngwiki_enzymatic_cycle_mm.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/examples/bngwiki_simple.py to bngwiki_simple.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/examples/earm_1_0.py to earm_1_0.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/examples/earm_1_3.py to earm_1_3.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/examples/explicit.py to explicit.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/examples/expression_observables.py to expression_observables.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/examples/fixed_initial.py to fixed_initial.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/examples/fricker_2010_apoptosis.py to fricker_2010_apoptosis.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/examples/hello_pysb.py to hello_pysb.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/examples/kinase_cascade.py to kinase_cascade.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/examples/localfunc.py to localfunc.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/examples/michment.py to michment.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/examples/move_connected.py to move_connected.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/examples/robertson.py to robertson.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/examples/run_bax_pore.py to run_bax_pore.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/examples/run_bax_pore_sequential.py to run_bax_pore_sequential.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/examples/run_bng_ssa_example.py to run_bng_ssa_example.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/examples/run_earm_1_0.py to run_earm_1_0.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/examples/run_earm_hpp.py to run_earm_hpp.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/examples/run_earm_stochkit.py to run_earm_stochkit.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/examples/run_fixed_initial.py to run_fixed_initial.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/examples/run_kinase_cascade.py to run_kinase_cascade.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/examples/run_michment.py to run_michment.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/examples/run_robertson.py to run_robertson.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/examples/run_tutorial_a.py to run_tutorial_a.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/examples/run_tyson_oscillator.py to run_tyson_oscillator.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/examples/run_tyson_oscillator_stochkit.py to run_tyson_oscillator_stochkit.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/examples/synth_deg.py to synth_deg.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/examples/tutorial_a.py to tutorial_a.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/examples/tutorial_b.py to tutorial_b.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/examples/tutorial_c.py to tutorial_c.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/examples/tyson_oscillator.py to tyson_oscillator.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/tools/__init__.py to __init__.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/tools/render_reactions.py to render_reactions.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/tools/render_species.py to render_species.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/tools/sensitivity_analysis.py to sensitivity_analysis.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/tools/species_graph.py to species_graph.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/importers/__init__.py to __init__.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/importers/bngl.py to bngl.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/importers/json.py to json.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/importers/sbml.py to sbml.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/generator/__init__.py to __init__.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/generator/bng.py to bng.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/generator/kappa.py to kappa.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/__init__.py to __init__.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/anneal_mod.py to anneal_mod.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/annotation.py to annotation.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/builder.py to builder.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/core.py to core.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/integrate.py to integrate.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/jacobian.py to jacobian.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/kappa.py to kappa.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/logging.py to logging.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/macros.py to macros.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/pathfinder.py to pathfinder.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/pattern.py to pattern.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/util.py to util.cpython-311.pyc
byte-compiling /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb/bng.py to bng.cpython-311.pyc
writing byte-compilation script '/tmp/tmp1qqptk7g.py'
/usr/bin/python3 /tmp/tmp1qqptk7g.py
removing /tmp/tmp1qqptk7g.py
running install_egg_info
running egg_info
creating pysb.egg-info
writing pysb.egg-info/PKG-INFO
writing dependency_links to pysb.egg-info/dependency_links.txt
writing requirements to pysb.egg-info/requires.txt
writing top-level names to pysb.egg-info/top_level.txt
writing manifest file 'pysb.egg-info/SOURCES.txt'
reading manifest file 'pysb.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
adding license file 'LICENSE.txt'
writing manifest file 'pysb.egg-info/SOURCES.txt'
Copying pysb.egg-info to /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11/site-packages/pysb-1.14.0-py3.11.egg-info
running install_scripts
creating /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/bin
copying build/scripts-3.11/pysb_export -> /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/bin
changing mode of /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/bin/pysb_export to 755
+ rm -rfv /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/bin/__pycache__
+ chmod +x /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64//usr/lib/python3.11/site-packages/pysb/examples/run_bax_pore.py /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64//usr/lib/python3.11/site-packages/pysb/examples/run_bax_pore_sequential.py /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64//usr/lib/python3.11/site-packages/pysb/examples/run_bng_ssa_example.py /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64//usr/lib/python3.11/site-packages/pysb/examples/run_earm_1_0.py /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64//usr/lib/python3.11/site-packages/pysb/examples/run_earm_hpp.py /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64//usr/lib/python3.11/site-packages/pysb/examples/run_earm_stochkit.py /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64//usr/lib/python3.11/site-packages/pysb/examples/run_fixed_initial.py /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64//usr/lib/python3.11/site-packages/pysb/examples/run_kinase_cascade.py /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64//usr/lib/python3.11/site-packages/pysb/examples/run_michment.py /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64//usr/lib/python3.11/site-packages/pysb/examples/run_robertson.py /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64//usr/lib/python3.11/site-packages/pysb/examples/run_tutorial_a.py /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64//usr/lib/python3.11/site-packages/pysb/examples/run_tyson_oscillator.py /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64//usr/lib/python3.11/site-packages/pysb/examples/run_tyson_oscillator_stochkit.py
+ chmod +x /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64//usr/lib/python3.11/site-packages/pysb/tools/render_reactions.py /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64//usr/lib/python3.11/site-packages/pysb/tools/render_species.py /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64//usr/lib/python3.11/site-packages/pysb/tools/sensitivity_analysis.py /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64//usr/lib/python3.11/site-packages/pysb/tools/species_graph.py
+ /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 1.14.0-2.fc38 --unique-debug-suffix -1.14.0-2.fc38.x86_64 --unique-debug-src-base python-pysb-1.14.0-2.fc38.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/pysb-1.14.0
find: 'debug': No such file or directory
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/check-rpaths
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
*** WARNING: ./usr/lib/python3.11/site-packages/pysb/tools/sensitivity_analysis.py is executable but has no shebang, removing executable bit
*** WARNING: ./usr/lib/python3.11/site-packages/pysb/examples/run_tyson_oscillator_stochkit.py is executable but has no shebang, removing executable bit
*** WARNING: ./usr/lib/python3.11/site-packages/pysb/examples/run_tyson_oscillator.py is executable but has no shebang, removing executable bit
*** WARNING: ./usr/lib/python3.11/site-packages/pysb/examples/run_tutorial_a.py is executable but has no shebang, removing executable bit
*** WARNING: ./usr/lib/python3.11/site-packages/pysb/examples/run_robertson.py is executable but has no shebang, removing executable bit
*** WARNING: ./usr/lib/python3.11/site-packages/pysb/examples/run_michment.py is executable but has no shebang, removing executable bit
*** WARNING: ./usr/lib/python3.11/site-packages/pysb/examples/run_kinase_cascade.py is executable but has no shebang, removing executable bit
*** WARNING: ./usr/lib/python3.11/site-packages/pysb/examples/run_fixed_initial.py is executable but has no shebang, removing executable bit
*** WARNING: ./usr/lib/python3.11/site-packages/pysb/examples/run_earm_stochkit.py is executable but has no shebang, removing executable bit
*** WARNING: ./usr/lib/python3.11/site-packages/pysb/examples/run_earm_hpp.py is executable but has no shebang, removing executable bit
*** WARNING: ./usr/lib/python3.11/site-packages/pysb/examples/run_earm_1_0.py is executable but has no shebang, removing executable bit
*** WARNING: ./usr/lib/python3.11/site-packages/pysb/examples/run_bng_ssa_example.py is executable but has no shebang, removing executable bit
*** WARNING: ./usr/lib/python3.11/site-packages/pysb/examples/run_bax_pore_sequential.py is executable but has no shebang, removing executable bit
*** WARNING: ./usr/lib/python3.11/site-packages/pysb/examples/run_bax_pore.py is executable but has no shebang, removing executable bit
+ /usr/lib/rpm/brp-remove-la-files
+ env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2
Bytecompiling .py files below /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/lib/python3.11 using python3.11
+ /usr/lib/rpm/redhat/brp-python-hardlink
Processing files: python3-pysb-1.14.0-2.fc38.noarch
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.QfUap1
+ umask 022
+ cd /builddir/build/BUILD
+ cd pysb-1.14.0
+ DOCDIR=/builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/share/doc/python-pysb
+ export LC_ALL=C
+ LC_ALL=C
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/share/doc/python-pysb
+ cp -pr README.rst /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/share/doc/python-pysb
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.OjHtUQ
+ umask 022
+ cd /builddir/build/BUILD
+ cd pysb-1.14.0
+ LICENSEDIR=/builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/share/licenses/python-pysb
+ export LC_ALL=C
+ LC_ALL=C
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/share/licenses/python-pysb
+ cp -pr LICENSE.txt /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/share/licenses/python-pysb
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: python-pysb = 1.14.0-2.fc38 python3-pysb = 1.14.0-2.fc38 python3.11-pysb = 1.14.0-2.fc38 python3.11dist(pysb) = 1.14 python3dist(pysb) = 1.14
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: /usr/bin/python3 python(abi) = 3.11 python3.11dist(networkx) python3.11dist(numpy) python3.11dist(scipy) >= 1.1 python3.11dist(sympy) >= 1.6
Obsoletes: python-pysb < 1.14.0-2.fc38
Processing files: python-pysb-doc-1.14.0-2.fc38.noarch
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.9DINOe
+ umask 022
+ cd /builddir/build/BUILD
+ cd pysb-1.14.0
+ DOCDIR=/builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/share/doc/python-pysb
+ export LC_ALL=C
+ LC_ALL=C
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/share/doc/python-pysb
+ cp -pr doc/_build/html /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/share/doc/python-pysb
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.bBvoES
+ umask 022
+ cd /builddir/build/BUILD
+ cd pysb-1.14.0
+ LICENSEDIR=/builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/share/licenses/python-pysb
+ export LC_ALL=C
+ LC_ALL=C
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/share/licenses/python-pysb
+ cp -pr LICENSE.txt /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64/usr/share/licenses/python-pysb
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: bundled(jquery) python-pysb-doc = 1.14.0-2.fc38
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Obsoletes: python-pysb-docs <= 1.0.1
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64
Wrote: /builddir/build/RPMS/python3-pysb-1.14.0-2.fc38.noarch.rpm
Wrote: /builddir/build/RPMS/python-pysb-doc-1.14.0-2.fc38.noarch.rpm
Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.QXxgkh
+ umask 022
+ cd /builddir/build/BUILD
+ cd pysb-1.14.0
+ /usr/bin/rm -rf /builddir/build/BUILDROOT/python-pysb-1.14.0-2.fc38.x86_64
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.TukuJg
+ umask 022
+ cd /builddir/build/BUILD
+ rm -rf pysb-1.14.0 pysb-1.14.0.gemspec
+ RPM_EC=0
++ jobs -p
+ exit 0
Child return code was: 0